RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16627
(713 letters)
>d1pd0a3 c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 252
Score = 245 bits (627), Expect = 4e-77
Identities = 88/250 (35%), Positives = 143/250 (57%), Gaps = 10/250 (4%)
Query: 124 PQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPG-DRRTSIAIITYDSAVHFYSL- 181
P PA Y FL+DVSQ + +SG L T LL L S+P D RT I+I+ D+A+H++ +
Sbjct: 1 PPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIP 60
Query: 182 ------AEGQTQPSQMILTDIDDIFLPSPENILVNLSECYDMIVDLLKQLPGKFKDSLDS 235
E Q + M + D+++ FLP P +++V+L C I LL ++P F+ +L +
Sbjct: 61 LDSENNEESADQINMMDIADLEEPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLIT 120
Query: 236 GSALGPALQAAFKLLQPTGGRITIFQTCLPNRGPGALQSRENPNQ--RSNDDPPHMNPAT 293
ALGPAL++A+ L+ GG+I + LPN G G LQ R S + ++
Sbjct: 121 NFALGPALKSAYHLIGGVGGKIIVVSGTLPNLGIGKLQRRNESGVVNTSKETAQLLSCQD 180
Query: 294 DFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQL 353
FYK ++C+ I VDLF+ + Y+D+A+LS +S+F++G H P +SGKN + + +
Sbjct: 181 SFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGFSGKNPNDIVKF 240
Query: 354 DRMFSRYLTR 363
F+++++
Sbjct: 241 STEFAKHISM 250
>d2qtva3 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 271
Score = 187 bits (476), Expect = 6e-55
Identities = 48/281 (17%), Positives = 92/281 (32%), Gaps = 54/281 (19%)
Query: 126 PAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAE-- 183
P ++ F++D++ L E ++ L +P + I +ITY + V + L+
Sbjct: 2 PPIFFFVVDLTSETENLDSL---KESIITSLSLLPPNAL--IGLITYGNVVQLHDLSSET 56
Query: 184 ----------------------------GQTQPSQMILTDIDDIFLPSPENILVNLSECY 215
G + + ++ + S + L +
Sbjct: 57 IDRCNVFRGDREYQLEALTEMLTGQKPTGPGGAASHLPNAMNKVTPFSLNRFFLPLEQVE 116
Query: 216 DMIVDLLKQL---PGKFKDSLDSGSALGPALQAAFKLLQ----PTGGRITIFQTCLPNRG 268
+ LL+ L A G AL A LLQ RI +F +
Sbjct: 117 FKLNQLLENLSPDQWSVPAGHRPLRATGSALNIASLLLQGCYKNIPARIILFASGPGTVA 176
Query: 269 PGALQSRENPNQ-RSNDD-----PPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDL 322
PG + + E + RS+ D H A FY +IA + VD+F + +
Sbjct: 177 PGLIVNSELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTVDIFAGCYDQIGM 236
Query: 323 ATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMFSRYLTR 363
+ + ++ + G + +S + + R +
Sbjct: 237 SEMKQLTDSTGGVLLLTDAFST------AIFKQSYLRLFAK 271
>d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 177
Score = 134 bits (338), Expect = 6e-37
Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 1/105 (0%)
Query: 356 MFSRYLTRKIGFESVMRIRCTKGMSIHTFHGNFFVRSTDLLALPNVNPDAGYGIQISIDE 415
+ Y E+VMR R + G+ + F+G+FF RS+DL A + D Y ++++DE
Sbjct: 74 VIRPYQHLYDCMETVMRARGSTGLRMSRFYGHFFNRSSDLCAFSTMPRDQSYLFEVNVDE 133
Query: 416 NLTHIQYACFQVAVLYTSSKGDRRIRVHTLCLPVVSNINDVLVGA 460
++ Y QVAVL + + RRIR+ TL +P ++ +V A
Sbjct: 134 SIM-ADYCYVQVAVLLSLNNSQRRIRIITLAMPTTESLAEVYASA 177
>d1pd0a1 a.71.2.1 (A:647-753) Sec24 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 107
Score = 107 bits (269), Expect = 2e-28
Identities = 38/108 (35%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
Query: 461 DQACIAGLLAKMAVDRSLQHSLSDAREAFLNVVCDVLSTYKMTQAG---HLTGSLLAPSS 517
DQ IA AV+++L SL DAR V D+L+TYK L ++
Sbjct: 1 DQLAIASFYNSKAVEKALNSSLDDARVLINKSVQDILATYKKEIVVSNTAGGAPLRLCAN 60
Query: 518 LKVLPLYVLALLKHPAFRIGQSTRLDDRLFAMTEMKCLPLNSLMLSIY 565
L++ PL + +L KH AFR G D R A+ ++ LPL L+ +IY
Sbjct: 61 LRMFPLLMHSLTKHMAFRSGIVPS-DHRASALNNLESLPLKYLIKNIY 107
>d1pd0a4 d.109.2.1 (A:754-926) Sec24 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 173
Score = 98.9 bits (246), Expect = 1e-24
Identities = 30/171 (17%), Positives = 75/171 (43%), Gaps = 23/171 (13%)
Query: 566 PELYPIHTLDQDPTIEWNEL------QVPIPRILQLSAERLQATGTYLLNMPDLIIILVR 619
P++Y +H + + + + +P+ + ++ + G YL++ + + + +
Sbjct: 1 PDVYSLHDMADEAGLPVQTEDGEATGTIVLPQPINATSSLFERYGLYLIDNGNELFLWMG 60
Query: 620 HGTSPAICSGLFGFQSVAQMPETLFELPQLE-TQLSLKLNSFISYL--NDDKAYVSPVKV 676
PA+ +FG Q + +P E+P +E ++ + ++ + I+ L +DD + +
Sbjct: 61 GDAVPALVFDVFGTQDIFDIPIGKQEIPVVENSEFNQRVRNIINQLRNHDDVITYQSLYI 120
Query: 677 IKDSSPD--------------RMEFYDKLIEDKNAGGMAYYEFLLRIREQV 713
++ +S R+ L+EDK +Y EFL ++ ++
Sbjct: 121 VRGASLSEPVNHASAREVATLRLWASSTLVEDKILNNESYREFLQIMKARI 171
>d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 85
Score = 41.8 bits (98), Expect = 1e-05
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 86 QFLYDRNTEMFGDPYRRPEIQSATVEYLATADYTVRD 122
+ + Y R EI+ A +EY+A +YT+R
Sbjct: 49 MQMDQSDPNDPKSRYDRNEIKCAVMEYMAPKEYTLRQ 85
>d2qtva5 g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 75
Score = 34.0 bits (78), Expect = 0.005
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 97 GDPYRRPEIQSATVEYLATADYT 119
E+QS T+EY+ T
Sbjct: 53 SQENMPLELQSTTIEYITNKPVT 75
>d2qtva2 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 176
Score = 36.3 bits (84), Expect = 0.005
Identities = 13/58 (22%), Positives = 19/58 (32%)
Query: 401 VNPDAGYGIQISIDENLTHIQYACFQVAVLYTSSKGDRRIRVHTLCLPVVSNINDVLV 458
N A +S + A Q Y S G RIRV T+ ++ +
Sbjct: 116 ANTAANSNPMMSAPGSADRPHLAYTQFITTYQHSSGTNRIRVTTVANQLLPFGTPAIA 173
>d1v19a_ c.72.1.1 (A:) 2-keto-3-deoxygluconate kinase {Thermus
thermophilus [TaxId: 274]}
Length = 302
Score = 34.4 bits (77), Expect = 0.043
Identities = 35/274 (12%), Positives = 61/274 (22%), Gaps = 12/274 (4%)
Query: 216 DMIVDLLKQLPGKFKDSLDSGSALG--PALQA-AFKLLQPTGGRITIFQTCLPNRGPGAL 272
+ +V L+ Q PG + +G A A L G F + GA+
Sbjct: 9 EPLVALVPQEPGHLRGKRLLEVYVGGAEVNVAVALARL----GVKVGFVGRVGEDELGAM 64
Query: 273 QSRENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFS 332
+ + P ++
Sbjct: 65 VEERLRAEGVDLTHFRRAPGFTGLYLREYLPLGQGRVFYYRKGSAGSALAPGAFDPDYLE 124
Query: 333 SGCIHHIPLYSGKNMSHVYQLDRMFSRYLTRKIGFESVMRIRCTKGMSIHTFHGNFFVRS 392
H+ + R FS + + V
Sbjct: 125 GVRFLHL----SGITPALSPEARAFSLWAMEEAKRRGVRVSLDVNYRQTLWSPEEARGFL 180
Query: 393 TDLLALPNVNPDAGYGIQISIDENLTHIQYACFQVAVLYTSSKGDRRIRVHTLCLPVVSN 452
L ++ + ++ ++ VL +KG
Sbjct: 181 ERALPGVDLLFLSEEEAELLFGRVEEALRALSAPEVVLKRGAKGAWAFVDGRRVEGSAFA 240
Query: 453 INDV-LVGADQACIAGLLAKMAVDRSLQHSLSDA 485
+ V VGA A AG LA ++ L A
Sbjct: 241 VEAVDPVGAGDAFAAGYLAGAVWGLPVEERLRLA 274
>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB
{Pectobacterium carotovorum [TaxId: 554]}
Length = 230
Score = 27.5 bits (59), Expect = 5.6
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 460 ADQACIAGLLAKMAVDRSLQHSLSDAREA 488
A A + K AV++ H L R+A
Sbjct: 196 ASYPASAFINTKRAVNKPFIHLLEQTRDA 224
>d1zdya1 d.313.1.1 (A:3-303) Aromatic prenyltransferase
{Streptomyces sp. CL190 [TaxId: 93372]}
Length = 301
Score = 27.1 bits (60), Expect = 7.8
Identities = 8/49 (16%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 28 QQQQTLNSQFSNLSVNQGMNKMWGYEPHD-LLNTRDILPATKVEPPPIR 75
Q+ ++ + V G K + + P D + ++ + PP +
Sbjct: 97 QKHLPVSMFAIDGEVTGGFKKTYAFFPTDNMPGVAELSAIPSM-PPAVA 144
>d1gska2 b.6.1.3 (A:183-356) Spore coat protein A, CotA {Bacillus
subtilis [TaxId: 1423]}
Length = 174
Score = 26.6 bits (58), Expect = 8.2
Identities = 21/118 (17%), Positives = 36/118 (30%), Gaps = 10/118 (8%)
Query: 115 TADYTVRDPPQPAMYLFLL-DVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYD 173
D ++ P P L + S + A G V + L+ P R + +
Sbjct: 19 NEDGSLFYPSAPENPSPSLPNPSIVPAFCGETILVNGKVWPYLEVEPRKYRFRVINASNT 78
Query: 174 SAVHFYSLAEGQTQPSQMILTDIDDIFLPSP---ENILVNLSECYDMIVDLLKQLPGK 228
+ I D LP + + +E YD+I+D G+
Sbjct: 79 RTYNLSL-----DNGGDFIQIGSDGGLLPRSVKLNSFSLAPAERYDIIID-FTAYEGE 130
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.402
Gapped
Lambda K H
0.267 0.0629 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,580,273
Number of extensions: 120316
Number of successful extensions: 297
Number of sequences better than 10.0: 1
Number of HSP's gapped: 285
Number of HSP's successfully gapped: 12
Length of query: 713
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 621
Effective length of database: 1,144,436
Effective search space: 710694756
Effective search space used: 710694756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.6 bits)