Query psy16628
Match_columns 107
No_of_seqs 114 out of 382
Neff 5.1
Searched_HMMs 29240
Date Fri Aug 16 17:45:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16628.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16628hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3eh1_A Protein transport prote 99.9 1.5E-26 5.1E-31 200.3 11.3 97 3-107 142-238 (751)
2 3efo_B SEC24 related gene fami 99.9 6.4E-26 2.2E-30 196.7 11.8 99 3-107 157-260 (770)
3 3eh2_A Protein transport prote 99.9 9.3E-26 3.2E-30 195.6 12.7 99 3-107 153-256 (766)
4 1m2v_B SEC24, protein transpor 99.9 1.1E-22 3.6E-27 179.8 10.3 97 3-107 285-389 (926)
5 1pcx_A Protein transport prote 99.9 7.6E-23 2.6E-27 178.1 9.0 97 3-107 169-273 (810)
6 1m2o_A SEC23, protein transpor 99.7 2.5E-17 8.6E-22 142.6 5.7 72 12-88 104-175 (768)
7 2nut_A Protein transport prote 99.7 6.6E-17 2.3E-21 140.1 6.5 80 19-103 122-226 (769)
8 1mjn_A Integrin alpha-L; rossm 96.8 0.0032 1.1E-07 43.9 6.1 51 29-81 2-52 (179)
9 1q0p_A Complement factor B; VO 96.7 0.0019 6.6E-08 45.5 4.7 58 24-82 10-68 (223)
10 1ijb_A VON willebrand factor; 96.7 0.0045 1.5E-07 44.0 6.4 57 28-85 12-70 (202)
11 3zqk_A VON willebrand factor; 96.6 0.0044 1.5E-07 43.9 6.0 61 24-85 16-78 (199)
12 2xgg_A Microneme protein 2; A/ 96.6 0.0052 1.8E-07 42.7 6.0 53 28-81 16-69 (178)
13 1mf7_A Integrin alpha M; cell 96.5 0.0048 1.6E-07 43.1 5.5 52 28-81 4-55 (194)
14 1v7p_C Integrin alpha-2; snake 96.5 0.0085 2.9E-07 42.2 6.8 54 29-85 6-61 (200)
15 4hqf_A Thrombospondin-related 96.4 0.0056 1.9E-07 45.7 5.8 59 28-86 20-80 (281)
16 1n3y_A Integrin alpha-X; alpha 96.3 0.0096 3.3E-07 41.3 6.1 52 28-81 8-59 (198)
17 2b2x_A Integrin alpha-1; compu 96.3 0.011 3.7E-07 42.4 6.5 54 28-84 21-76 (223)
18 1pt6_A Integrin alpha-1; cell 96.2 0.015 5E-07 41.3 6.9 54 28-84 6-61 (213)
19 1atz_A VON willebrand factor; 96.1 0.017 5.8E-07 40.1 6.5 56 28-84 4-61 (189)
20 3n2n_F Anthrax toxin receptor 96.1 0.04 1.4E-06 37.6 8.2 52 28-82 6-57 (185)
21 3ibs_A Conserved hypothetical 95.7 0.051 1.7E-06 38.1 7.8 54 26-82 8-65 (218)
22 4hqo_A Sporozoite surface prot 95.7 0.021 7.3E-07 42.4 5.8 54 28-81 17-71 (266)
23 3rag_A Uncharacterized protein 95.4 0.039 1.3E-06 42.4 6.4 49 28-78 133-182 (242)
24 2odp_A Complement C2; C3/C5 co 95.2 0.033 1.1E-06 44.4 5.8 56 25-81 5-61 (509)
25 4fx5_A VON willebrand factor t 94.5 0.14 4.8E-06 41.7 8.0 53 28-82 76-129 (464)
26 1shu_X Anthrax toxin receptor 94.4 0.18 6.2E-06 34.1 7.2 51 28-81 5-55 (182)
27 2x31_A Magnesium-chelatase 60 94.3 0.046 1.6E-06 37.7 3.9 48 27-77 3-51 (189)
28 3hrz_D Complement factor B; se 93.7 0.061 2.1E-06 44.7 4.3 54 26-80 240-294 (741)
29 1rrk_A Complement factor B; BB 93.7 0.072 2.5E-06 42.1 4.6 52 29-81 1-53 (497)
30 3k6s_A Integrin alpha-X; cell 91.9 0.33 1.1E-05 43.6 6.7 51 29-81 130-180 (1095)
31 2ww8_A RRGA, cell WALL surface 91.3 0.24 8.1E-06 43.9 5.0 54 26-79 221-279 (893)
32 2x5n_A SPRPN10, 26S proteasome 86.7 0.72 2.5E-05 33.1 4.0 48 30-77 3-55 (192)
33 4b4t_W RPN10, 26S proteasome r 86.6 0.49 1.7E-05 36.4 3.3 47 31-77 5-56 (268)
34 1jey_A KU70; double-strand DNA 79.7 4.9 0.00017 33.6 6.9 50 30-79 36-92 (609)
35 1jey_B KU80; double-strand DNA 78.0 5.6 0.00019 32.8 6.6 49 30-78 8-62 (565)
36 2iue_A Pactolus I-domain; memb 70.3 6.4 0.00022 29.2 4.7 48 29-78 3-51 (212)
37 1yvr_A RO autoantigen, 60-kDa 50.9 7.6 0.00026 31.7 2.2 55 27-84 366-424 (538)
38 1b3t_A Protein (nuclear protei 50.8 21 0.00071 25.3 4.2 31 49-79 113-144 (147)
39 3t3p_B Integrin beta-3; integr 43.6 30 0.001 28.7 4.7 46 27-76 109-157 (472)
40 3v4v_B Integrin beta-7; cell a 41.0 46 0.0016 27.9 5.5 47 26-75 129-177 (503)
41 3vi3_B Integrin beta-1; beta p 35.1 75 0.0026 26.2 5.8 47 27-76 120-168 (454)
42 1xak_A SARS ORF7A accessory pr 32.1 20 0.00068 22.9 1.5 31 67-97 47-77 (83)
43 3fcs_B Integrin beta-3; beta p 30.3 35 0.0012 29.4 3.2 47 27-77 109-158 (690)
44 3k6s_B Integrin beta-2; cell r 25.5 27 0.00092 30.1 1.6 48 28-77 103-151 (687)
45 1vs6_Z 50S ribosomal protein L 24.8 19 0.00066 22.4 0.5 16 7-22 31-46 (70)
46 3v2d_4 50S ribosomal protein L 23.6 30 0.001 21.7 1.2 16 7-22 30-45 (71)
47 2nvo_A RO sixty-related protei 23.4 73 0.0025 26.0 3.8 55 27-85 360-421 (535)
48 3l7h_A RE64145P, roadblock; LC 21.7 75 0.0026 20.6 2.9 65 19-98 20-84 (97)
No 1
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=99.94 E-value=1.5e-26 Score=200.31 Aligned_cols=97 Identities=39% Similarity=0.660 Sum_probs=88.0
Q ss_pred cceeEEecccccCCCceeeeecccCCceeeEEEEEcchhhhhcChHHHHHHHHHHHhhcCCCCCceEEEEEEecCeEEEE
Q psy16628 3 LGYVEFRTLHLSNSHAYYTIVWELGIFKCPLYFMVVKGYACYCKYQALQREVLLNQLKSMPGDRRTSIAIITYDSAVHFY 82 (107)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yvFvIDVS~~Ai~sG~l~~~~~sIk~~L~~lp~~~~t~IgiITfDs~vhFy 82 (107)
.|.|||-+ |++|. -+++.|++|+|+||||++|+++|+++++|++|+++|+.+|+++|++|||||||++||||
T Consensus 142 ~~tvEy~~-----p~~y~---~r~p~pp~yvFvIDvs~~a~~~g~l~~~~~sl~~~L~~lp~~~~~~VG~ITfd~~vh~y 213 (751)
T 3eh1_A 142 NSTVEFIA-----SSDYM---LRPPQPAVYLFVLDVSHNAVEAGYLTILCQSLLENLDKLPGDSRTRIGFMTFDSTIHFY 213 (751)
T ss_dssp CSEEEEEE-----CGGGC---SSSCCCCEEEEEEECSHHHHHHTHHHHHHHHHHHHTTTSSCCTTCEEEEEEESSSEEEE
T ss_pred cceEEEEc-----Chhhh---cCCCCCcEEEEEEEccHhhhhhhHHHHHHHHHHHHHHhcCCCcCcEEEEEEeCCEEEEE
Confidence 56777754 44443 25678999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCccEEEeCCCCCCCCCCC
Q psy16628 83 SLAEGQTQPSQMILTDIDDIFLPSP 107 (107)
Q Consensus 83 nl~~~l~~pqmlVVsDldd~FvP~P 107 (107)
||+++++||||+||+|++|+|+|.|
T Consensus 214 ~l~~~~~~~qmlvv~dl~d~f~P~~ 238 (751)
T 3eh1_A 214 NLQEGLSQPQMLIVSDIDDVFLPTP 238 (751)
T ss_dssp ECCTTCSSCEEEEESCTTCTTSCCG
T ss_pred ECCCCcccceeeccccccccCCCCh
Confidence 9999999999999999999999975
No 2
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=99.93 E-value=6.4e-26 Score=196.70 Aligned_cols=99 Identities=22% Similarity=0.364 Sum_probs=87.9
Q ss_pred cceeEEecccccCCCceeeeecccCCceeeEEEEEcchhhhhcChHHHHHHHHHHHhhcCCCC-----CceEEEEEEecC
Q psy16628 3 LGYVEFRTLHLSNSHAYYTIVWELGIFKCPLYFMVVKGYACYCKYQALQREVLLNQLKSMPGD-----RRTSIAIITYDS 77 (107)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yvFvIDVS~~Ai~sG~l~~~~~sIk~~L~~lp~~-----~~t~IgiITfDs 77 (107)
.|+|||-+ |++ |....+.+.|++|+|+||||++|+++|+++++|++|+++|+.+|++ +|++|||||||+
T Consensus 157 ~~tvEf~a-----p~e-Y~~~~~~p~pp~y~FvIDvs~~av~sg~l~~~~~sl~~~L~~lP~~~~~~~~~~~VG~ITfd~ 230 (770)
T 3efo_B 157 LGSYEYVA-----TLD-YCRKSKPPNPPAFIFMIDVSYSNIKNGLVKLICEELKTMLEKIPKEEQEETSAIRVGFITYNK 230 (770)
T ss_dssp CSEEEEEC-----CGG-GSGGGSCCCCCEEEEEEECSHHHHHTTHHHHHHHHHHHHGGGCCCCTTSSSCSCEEEEEEESS
T ss_pred cCceeeec-----CHH-HhccCCCCCCcEEEEEEEcchhhccchHHHHHHHHHHHHHHhCCccccccCccceEEEEEeCC
Confidence 46677643 334 4555678899999999999999999999999999999999999974 369999999999
Q ss_pred eEEEEecCCCCCCccEEEeCCCCCCCCCCC
Q psy16628 78 AVHFYSLAEGQTQPSQMILTDIDDIFLPSP 107 (107)
Q Consensus 78 ~vhFynl~~~l~~pqmlVVsDldd~FvP~P 107 (107)
+||||||+++++||||+||+|++|+|+|+|
T Consensus 231 ~vh~y~l~~~~~q~q~~vv~d~~d~f~P~~ 260 (770)
T 3efo_B 231 VLHFFNVKSNLAQPQMMVVTDVGEVFVPLL 260 (770)
T ss_dssp SEEEEECCTTCSSCEEEEECCTTSCCCCCS
T ss_pred EEEEEeCCCcccCceEEEecccccccCCCc
Confidence 999999999999999999999999999975
No 3
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=99.93 E-value=9.3e-26 Score=195.58 Aligned_cols=99 Identities=24% Similarity=0.396 Sum_probs=88.0
Q ss_pred cceeEEecccccCCCceeeeecccCCceeeEEEEEcchhhhhcChHHHHHHHHHHHhhcCCCC-----CceEEEEEEecC
Q psy16628 3 LGYVEFRTLHLSNSHAYYTIVWELGIFKCPLYFMVVKGYACYCKYQALQREVLLNQLKSMPGD-----RRTSIAIITYDS 77 (107)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yvFvIDVS~~Ai~sG~l~~~~~sIk~~L~~lp~~-----~~t~IgiITfDs 77 (107)
.|+|||-+ |++ |....+.+.||+|+|+||||++|+++|+++++|++|+++|+.+|++ ++++|||||||+
T Consensus 153 ~~~vef~a-----~~e-Y~~~~~~p~pp~y~FvIDvs~~av~sg~l~~~~~si~~~L~~lp~~~~~~~~~~~VG~ITfd~ 226 (766)
T 3eh2_A 153 LGSYEFLA-----TVD-YCKNNKFPSPPAFIFMIDVSYNAIRTGLVRLLCEELKSLLDFLPREGGAEESAIRVGFVTYNK 226 (766)
T ss_dssp CSEEEEEC-----CGG-GSGGGSCCCCCEEEEEEECSHHHHHTTHHHHHHHHHHHHGGGCCCCSSCSSCCCEEEEEEESS
T ss_pred cCceeeec-----CHh-hccCCCCCCCCEEEEEEECchhhccchHHHHHHHHHHHHHHhCCcccccCCccceEEEEEeCC
Confidence 36677643 333 4556688899999999999999999999999999999999999974 469999999999
Q ss_pred eEEEEecCCCCCCccEEEeCCCCCCCCCCC
Q psy16628 78 AVHFYSLAEGQTQPSQMILTDIDDIFLPSP 107 (107)
Q Consensus 78 ~vhFynl~~~l~~pqmlVVsDldd~FvP~P 107 (107)
+||||||++++++|||+||+|++|+|+|+|
T Consensus 227 ~vh~y~l~~~~~~~q~~vv~dl~d~f~P~~ 256 (766)
T 3eh2_A 227 VLHFYNVKSSLAQPQMMVVSDVADMFVPLL 256 (766)
T ss_dssp SEEEEECCTTCSSCEEEEECCTTTCCCCCC
T ss_pred EEEEEECCCCCCCceEEEecChhhhccccc
Confidence 999999999999999999999999999975
No 4
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=99.88 E-value=1.1e-22 Score=179.80 Aligned_cols=97 Identities=25% Similarity=0.401 Sum_probs=83.6
Q ss_pred cceeEEecccccCCCceeeeecccCCceeeEEEEEcchhhhhcChHHHHHHHHHHHhhcCCC-CCceEEEEEEecCeEEE
Q psy16628 3 LGYVEFRTLHLSNSHAYYTIVWELGIFKCPLYFMVVKGYACYCKYQALQREVLLNQLKSMPG-DRRTSIAIITYDSAVHF 81 (107)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yvFvIDVS~~Ai~sG~l~~~~~sIk~~L~~lp~-~~~t~IgiITfDs~vhF 81 (107)
.|.|||- .|++|.. +...+++|+|+||||..|+++|+++++|++|+++|+.||+ +++++|||||||++|||
T Consensus 285 ~~tvEyi-----~p~ey~~---r~p~ppvyvFvIDvS~~av~~g~l~~l~~sI~~~L~~LP~~~~~~~VGlITFds~Vh~ 356 (926)
T 1m2v_B 285 CAVMEYM-----APKEYTL---RQPPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIPNHDERTRISILCVDNAIHY 356 (926)
T ss_dssp CSEEEEE-----CCGGGCS---SCCCCCBEEEEEECSHHHHHSCHHHHHHHHHHHTTTTSCCTTSCCEECEEEESSSEEE
T ss_pred CceEEEE-----cChhhcc---CCCCCcEEEEEEECCHHHHhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEE
Confidence 4666665 3445542 4568999999999999999999999999999999999997 46999999999999999
Q ss_pred EecCCCCC-------CccEEEeCCCCCCCCCCC
Q psy16628 82 YSLAEGQT-------QPSQMILTDIDDIFLPSP 107 (107)
Q Consensus 82 ynl~~~l~-------~pqmlVVsDldd~FvP~P 107 (107)
|||++++. |+||++|+|++|+|+|+|
T Consensus 357 y~l~~~~~g~k~~~~q~qmlvvsdl~d~f~P~~ 389 (926)
T 1m2v_B 357 FKIPLDSENNEESADQINMMDIADLEEPFLPRP 389 (926)
T ss_dssp EECCCC---------CCEEEEECCCSSCCCSCS
T ss_pred EecCCcccCCcccccchhhccccccccccCCCc
Confidence 99998776 899999999999999976
No 5
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=99.88 E-value=7.6e-23 Score=178.13 Aligned_cols=97 Identities=25% Similarity=0.401 Sum_probs=79.7
Q ss_pred cceeEEecccccCCCceeeeecccCCceeeEEEEEcchhhhhcChHHHHHHHHHHHhhcCCC-CCceEEEEEEecCeEEE
Q psy16628 3 LGYVEFRTLHLSNSHAYYTIVWELGIFKCPLYFMVVKGYACYCKYQALQREVLLNQLKSMPG-DRRTSIAIITYDSAVHF 81 (107)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yvFvIDVS~~Ai~sG~l~~~~~sIk~~L~~lp~-~~~t~IgiITfDs~vhF 81 (107)
.|.|||- .|++|.. +...+++|+|+||||+.|+++|+++++|++|+++|+.+|+ +++++|||||||++|||
T Consensus 169 ~~tvEy~-----~p~~y~~---~~p~pp~yvFvIDvs~~av~~g~l~~~~~si~~~L~~Lp~~~~~~~VGlITfd~~V~~ 240 (810)
T 1pcx_A 169 CAVMEYM-----APKEYTL---RQPPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIPNHDERTRISILCVDNAIHY 240 (810)
T ss_dssp CSEEEEE-----CCGGGCS---SCCCCCEEEEEEECSHHHHHHTHHHHHHHHHHHHTTTSCCTTSCCEEEEEEESSSEEE
T ss_pred CceEEEE-----cCchhcc---CCCCCcEEEEEEECChHHHhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEE
Confidence 4566655 3445542 4578999999999999999999999999999999999997 46999999999999999
Q ss_pred EecCCCCC-------CccEEEeCCCCCCCCCCC
Q psy16628 82 YSLAEGQT-------QPSQMILTDIDDIFLPSP 107 (107)
Q Consensus 82 ynl~~~l~-------~pqmlVVsDldd~FvP~P 107 (107)
||+++++. |+||++|+|++|+|+|+|
T Consensus 241 ~~l~~~~~g~k~~~~q~~mlvv~dl~d~f~P~~ 273 (810)
T 1pcx_A 241 FKIPLDSENNEESADQINMMDIADLEEPFLPRP 273 (810)
T ss_dssp EECCCGGGC-------CEEECCCCTTCC-----
T ss_pred EecCccccCccccccchhhccccccccccCCCc
Confidence 99998766 899999999999999975
No 6
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=99.68 E-value=2.5e-17 Score=142.61 Aligned_cols=72 Identities=15% Similarity=0.222 Sum_probs=62.2
Q ss_pred cccCCCceeeeecccCCceeeEEEEEcchhhhhcChHHHHHHHHHHHhhcCCCCCceEEEEEEecCeEEEEecCCCC
Q psy16628 12 HLSNSHAYYTIVWELGIFKCPLYFMVVKGYACYCKYQALQREVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQ 88 (107)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~yvFvIDVS~~Ai~sG~l~~~~~sIk~~L~~lp~~~~t~IgiITfDs~vhFynl~~~l 88 (107)
|++.+-=+|+.+.+.+.|++|+|+||+|+.+++ +++++++|+.+|+.+|. +++|||||||++|||||+++++
T Consensus 104 EL~~~tvEy~~p~~~~~pp~~vFvIDvs~~~~~---l~~l~~sl~~~L~~Lp~--~~~VGlITf~~~V~~y~l~~~~ 175 (768)
T 1m2o_A 104 ELQSTTIEYITNKPVTVPPIFFFVVDLTSETEN---LDSLKESIITSLSLLPP--NALIGLITYGNVVQLHDLSSET 175 (768)
T ss_dssp GGTCSEEEEECSCCCCSCCEEEEEEECCSCHHH---HHHHHHHHHHHHHTSCT--TCEEEEEEESSEEEECCCSSSS
T ss_pred hhccCCEEEECCCCCCCCCEEEEEEECCcCHHH---HHHHHHHHHHHHHhCCC--CCEEEEEEECCEEEEEECCCCC
Confidence 333444456666677899999999999999985 78999999999999997 8999999999999999999865
No 7
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=99.66 E-value=6.6e-17 Score=140.14 Aligned_cols=80 Identities=15% Similarity=0.079 Sum_probs=62.0
Q ss_pred eeeeecccCCceeeEEEEEcchhhhhcChHHHHHHHHHHHhhcCCCCCceEEEEEEecCeEEEEecCCCC----------
Q psy16628 19 YYTIVWELGIFKCPLYFMVVKGYACYCKYQALQREVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQ---------- 88 (107)
Q Consensus 19 ~~~~~~~~~~~~~yvFvIDVS~~Ai~sG~l~~~~~sIk~~L~~lp~~~~t~IgiITfDs~vhFynl~~~l---------- 88 (107)
+|+.+.+.+.+++|+|+||||..|++ +++++++|+.+|+.+|. +++|||||||++|||||+++++
T Consensus 122 Ey~~~~~~p~pp~~vFvIDvS~~a~~---l~~l~~si~~~L~~Lp~--~~~VGlITf~~~v~~y~l~~~~~~~~~vf~G~ 196 (769)
T 2nut_A 122 EYVVLRGPQMPLIFLYVVDTCMEDED---LQALKESMQMSLSLLPP--TALVGLITFGRMVQVHELGCEGISKSYVFRGT 196 (769)
T ss_dssp EEEECSSCCCCCEEEEEEECCSCHHH---HHHHHHHHHHHHTTSCT--TCEEEEEEESSEEEEEESSCCSSCEEEEEETT
T ss_pred EEEccCCCCCCCEEEEEEECCccHHH---HHHHHHHHHHHHHhCCC--CceEEEEEeCCEEEEEeCCCCCCccceeecCC
Confidence 34444445789999999999999997 78999999999999997 8999999999999999999876
Q ss_pred -----CCccE-EEeCC----C-----CCCC
Q psy16628 89 -----TQPSQ-MILTD----I-----DDIF 103 (107)
Q Consensus 89 -----~~pqm-lVVsD----l-----dd~F 103 (107)
+|+|| ++++| + +|+|
T Consensus 197 k~~~~~q~~~ml~v~d~~~~~~~~~~~~~f 226 (769)
T 2nut_A 197 KDLSAKQLQEMLGLSKVPVTQATRGPQVQQ 226 (769)
T ss_dssp SCCCSHHHHHHHC-----------------
T ss_pred ccccHHHHHHHhCCCCcccccccccccccC
Confidence 66664 55875 3 8988
No 8
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=96.77 E-value=0.0032 Score=43.94 Aligned_cols=51 Identities=4% Similarity=-0.048 Sum_probs=38.0
Q ss_pred ceeeEEEEEcchhhhhcChHHHHHHHHHHHhhcCCCCCceEEEEEEecCeEEE
Q psy16628 29 FKCPLYFMVVKGYACYCKYQALQREVLLNQLKSMPGDRRTSIAIITYDSAVHF 81 (107)
Q Consensus 29 ~~~yvFvIDVS~~Ai~sG~l~~~~~sIk~~L~~lp~~~~t~IgiITfDs~vhF 81 (107)
+...+|++|.|.. +...-++.+.+.+++.++.+. ++++|||+|+|++..+-
T Consensus 2 ~~divfvlD~S~S-m~~~~~~~~k~~~~~~~~~l~-~~~~rv~vv~fs~~~~~ 52 (179)
T 1mjn_A 2 NVDLVFLFDGSMS-LQPDEFQKILDFMKDVMKKCS-NTSYQFAAVQFSTSYKT 52 (179)
T ss_dssp CEEEEEEEECBTT-CCHHHHHHHHHHHHHHHHHTT-TSSEEEEEEEESSSEEE
T ss_pred CccEEEEEeCCCC-CCHHHHHHHHHHHHHHHHHhC-CCCeEEEEEEECCceeE
Confidence 4567999999964 333235677788888888773 45799999999998764
No 9
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=96.72 E-value=0.0019 Score=45.51 Aligned_cols=58 Identities=7% Similarity=0.039 Sum_probs=39.0
Q ss_pred cccCCceeeEEEEEcchhhhhcChHHHHHHHHHHHhhcCCC-CCceEEEEEEecCeEEEE
Q psy16628 24 WELGIFKCPLYFMVVKGYACYCKYQALQREVLLNQLKSMPG-DRRTSIAIITYDSAVHFY 82 (107)
Q Consensus 24 ~~~~~~~~yvFvIDVS~~Ai~sG~l~~~~~sIk~~L~~lp~-~~~t~IgiITfDs~vhFy 82 (107)
..+..+...+|+||+|.. +...-+..+.+.++..++.++. +.+.+||+++|++..+..
T Consensus 10 ~~~~~~~div~vlD~SgS-M~~~~~~~~k~~~~~~i~~l~~~~~~~~v~lv~f~~~~~~~ 68 (223)
T 1q0p_A 10 LDPSGSMNIYLVLDGSDS-IGASNFTGAKKSLVNLIEKVASYGVKPRYGLVTYATYPKIW 68 (223)
T ss_dssp -----CEEEEEEEECSTT-TCHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEEESSSEEEE
T ss_pred ecCCCceeEEEEEeCCCC-CchHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCcccee
Confidence 344568899999999974 3322366777777777766544 457899999999887543
No 10
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=96.66 E-value=0.0045 Score=43.96 Aligned_cols=57 Identities=7% Similarity=0.136 Sum_probs=42.9
Q ss_pred CceeeEEEEEcchhhhhcChHHHHHHHHHHHhhcCCC-CCceEEEEEEecCeEEE-EecC
Q psy16628 28 IFKCPLYFMVVKGYACYCKYQALQREVLLNQLKSMPG-DRRTSIAIITYDSAVHF-YSLA 85 (107)
Q Consensus 28 ~~~~yvFvIDVS~~Ai~sG~l~~~~~sIk~~L~~lp~-~~~t~IgiITfDs~vhF-ynl~ 85 (107)
.+...+|+||.|.. +...-++.+.+.+++.++.++- .+++|||+|+|++..+. +.+.
T Consensus 12 ~~~divfvlD~SgS-m~~~~~~~~k~~~~~~v~~l~~~~~~~rv~vv~fs~~~~~~~~l~ 70 (202)
T 1ijb_A 12 RLLDLVFLLDGSSR-LSEAEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGSHAYIGLK 70 (202)
T ss_dssp SCEEEEEEEECBTT-SCHHHHHHHHHHHHHHHHTBCBSTTSEEEEEEEESSSEEEEECTT
T ss_pred CcccEEEEEECCCC-CCHHHHHHHHHHHHHHHHhcccCCCceEEEEEEECCCceEEEecC
Confidence 36889999999974 3333467788888888888863 34799999999987754 4554
No 11
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=96.61 E-value=0.0044 Score=43.93 Aligned_cols=61 Identities=8% Similarity=0.073 Sum_probs=43.0
Q ss_pred cccCCceeeEEEEEcchhhhhcChHHHHHHHHHHHhhcCCC-CCceEEEEEEecCeEEE-EecC
Q psy16628 24 WELGIFKCPLYFMVVKGYACYCKYQALQREVLLNQLKSMPG-DRRTSIAIITYDSAVHF-YSLA 85 (107)
Q Consensus 24 ~~~~~~~~yvFvIDVS~~Ai~sG~l~~~~~sIk~~L~~lp~-~~~t~IgiITfDs~vhF-ynl~ 85 (107)
.....+.-.+|+||.|.. +...-++.+.+.+++.++.+.- ++++|||+|+|++..+. +.+.
T Consensus 16 ~~~~~~~DivfvlD~S~S-m~~~~~~~~k~~~~~~~~~l~~~~~~~rv~vv~fs~~~~~~~~l~ 78 (199)
T 3zqk_A 16 KRNSMVLDVAFVLEGSDK-IGEADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYMVTVEYPFS 78 (199)
T ss_dssp ---CCCCEEEEEEECCTT-TCHHHHHHHHHHHHHHHHHSCBSTTSBEEEEEEESSSEEEEECTT
T ss_pred CCCCCCcCEEEEEECCCC-CCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEEECCcccEEEecC
Confidence 345567889999999964 3333456777888888888842 35899999999988764 3443
No 12
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=96.56 E-value=0.0052 Score=42.72 Aligned_cols=53 Identities=19% Similarity=0.197 Sum_probs=40.3
Q ss_pred CceeeEEEEEcchhhhhcChHHHHHHHHHHHhhcCCC-CCceEEEEEEecCeEEE
Q psy16628 28 IFKCPLYFMVVKGYACYCKYQALQREVLLNQLKSMPG-DRRTSIAIITYDSAVHF 81 (107)
Q Consensus 28 ~~~~yvFvIDVS~~Ai~sG~l~~~~~sIk~~L~~lp~-~~~t~IgiITfDs~vhF 81 (107)
.+...+|+||.|.. +...-++.+.+.+++.++.++. +++++||+|+|++..+.
T Consensus 16 ~~~divfvlD~SgS-m~~~~~~~~k~~~~~~i~~l~~~~~~~rv~vv~F~~~~~~ 69 (178)
T 2xgg_A 16 NQLDICFLIDSSGS-IGIQNFRLVKQFLHTFLMVLPIGPEEVNNAVVTYSTDVHL 69 (178)
T ss_dssp TCEEEEEEEECCTT-TCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEE
T ss_pred CCeeEEEEEECCCC-CCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCceEE
Confidence 36889999999974 3222456778888888888764 35799999999998753
No 13
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=96.51 E-value=0.0048 Score=43.07 Aligned_cols=52 Identities=8% Similarity=0.086 Sum_probs=38.5
Q ss_pred CceeeEEEEEcchhhhhcChHHHHHHHHHHHhhcCCCCCceEEEEEEecCeEEE
Q psy16628 28 IFKCPLYFMVVKGYACYCKYQALQREVLLNQLKSMPGDRRTSIAIITYDSAVHF 81 (107)
Q Consensus 28 ~~~~yvFvIDVS~~Ai~sG~l~~~~~sIk~~L~~lp~~~~t~IgiITfDs~vhF 81 (107)
.+...+|+||.|.. +...-++.+.+.+++.++.+. +++.+||+++|++..+-
T Consensus 4 ~~~div~vlD~SgS-m~~~~~~~~k~~~~~~~~~l~-~~~~~v~vv~f~~~~~~ 55 (194)
T 1mf7_A 4 EDSDIAFLIDGSGS-IIPHDFRRMKEFVSTVMEQLK-KSKTLFSLMQYSEEFRI 55 (194)
T ss_dssp CCEEEEEEEECCTT-SCHHHHHHHHHHHHHHHHHHC-CTTEEEEEEEESSSEEE
T ss_pred CCeeEEEEEeCCCC-CCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEEecCCceE
Confidence 46788999999974 332235566777777777765 45899999999998764
No 14
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=96.48 E-value=0.0085 Score=42.16 Aligned_cols=54 Identities=11% Similarity=0.175 Sum_probs=41.8
Q ss_pred ceeeEEEEEcchhhhhcChHHHHHHHHHHHhhcCCC-CCceEEEEEEecCeEEE-EecC
Q psy16628 29 FKCPLYFMVVKGYACYCKYQALQREVLLNQLKSMPG-DRRTSIAIITYDSAVHF-YSLA 85 (107)
Q Consensus 29 ~~~yvFvIDVS~~Ai~sG~l~~~~~sIk~~L~~lp~-~~~t~IgiITfDs~vhF-ynl~ 85 (107)
+...+|++|+|. |+. + +..+.+.+++.++.+.. +++.|||+|+|++..+- +.+.
T Consensus 6 ~~div~vlD~Sg-Sm~-~-~~~~k~~~~~~~~~l~~~~~~~rvglv~f~~~~~~~~~l~ 61 (200)
T 1v7p_C 6 LIDVVVVCDESN-SIY-P-WDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNPRVVFNLN 61 (200)
T ss_dssp CEEEEEEEECCT-TCC-C-HHHHHHHHHHHHHTSCBSTTSEEEEEEEESSSEEEEECTT
T ss_pred cccEEEEEECCC-Ccc-c-HHHHHHHHHHHHHhcCCCCCceEEEEEEECCCceEEEeCC
Confidence 567899999998 444 2 67888888888888863 35899999999998764 4454
No 15
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=96.41 E-value=0.0056 Score=45.68 Aligned_cols=59 Identities=7% Similarity=-0.031 Sum_probs=45.8
Q ss_pred CceeeEEEEEcchhhhhcChHHHHHHHHHHHhhcCCC-CCceEEEEEEecCeEEE-EecCC
Q psy16628 28 IFKCPLYFMVVKGYACYCKYQALQREVLLNQLKSMPG-DRRTSIAIITYDSAVHF-YSLAE 86 (107)
Q Consensus 28 ~~~~yvFvIDVS~~Ai~sG~l~~~~~sIk~~L~~lp~-~~~t~IgiITfDs~vhF-ynl~~ 86 (107)
.++-.+|+||.|..--...++..+.+.++..++.++. +.+.+||+|+|++..+- +.+..
T Consensus 20 ~~~div~vlD~SgSM~~~~~~~~~k~~~~~~v~~l~~~~~~~rvglv~Fs~~~~~~~~l~~ 80 (281)
T 4hqf_A 20 DEVDLYLLMDGSGSIRRHNWVNHAVPLAMKLIQQLNLNDNAIHLYASVFSNNAREIIRLHS 80 (281)
T ss_dssp SCEEEEEEEECCCCSSTHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEEEETTEEEEEEECS
T ss_pred CceeEEEEEeCCCCcCHHHHHHHHHHHHHHHHHHhccCCCCcEEEEEEcCCCceEEEEccc
Confidence 5788999999997544445667888899999988865 45799999999988843 45544
No 16
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=96.30 E-value=0.0096 Score=41.32 Aligned_cols=52 Identities=6% Similarity=0.089 Sum_probs=40.0
Q ss_pred CceeeEEEEEcchhhhhcChHHHHHHHHHHHhhcCCCCCceEEEEEEecCeEEE
Q psy16628 28 IFKCPLYFMVVKGYACYCKYQALQREVLLNQLKSMPGDRRTSIAIITYDSAVHF 81 (107)
Q Consensus 28 ~~~~yvFvIDVS~~Ai~sG~l~~~~~sIk~~L~~lp~~~~t~IgiITfDs~vhF 81 (107)
.+...+|+||+|..-- ..-+....+.++..++.+. .++.+||+++|++..+.
T Consensus 8 ~~~div~vlD~SgSM~-~~~~~~~~~~~~~~~~~l~-~~~~~v~lv~f~~~~~~ 59 (198)
T 1n3y_A 8 QEQDIVFLIDGSGSIS-SRNFATMMNFVRAVISQFQ-RPSTQFSLMQFSNKFQT 59 (198)
T ss_dssp CCEEEEEEEECCTTSC-HHHHHHHHHHHHHHHTTSC-TTTEEEEEEEESSSEEE
T ss_pred CCeeEEEEEECCCCCC-HHHHHHHHHHHHHHHHhcC-CCCcEEEEEEeCCCccE
Confidence 4678899999986433 2235578888888888885 45899999999998754
No 17
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=96.28 E-value=0.011 Score=42.38 Aligned_cols=54 Identities=20% Similarity=0.244 Sum_probs=41.2
Q ss_pred CceeeEEEEEcchhhhhcChHHHHHHHHHHHhhcCC-CCCceEEEEEEecCeEEE-Eec
Q psy16628 28 IFKCPLYFMVVKGYACYCKYQALQREVLLNQLKSMP-GDRRTSIAIITYDSAVHF-YSL 84 (107)
Q Consensus 28 ~~~~yvFvIDVS~~Ai~sG~l~~~~~sIk~~L~~lp-~~~~t~IgiITfDs~vhF-ynl 84 (107)
.+...+|+||+|.. +. + +..+.+.+++.++.+. ..++.+||+|+|++..+. +.+
T Consensus 21 ~~~div~vlD~SgS-M~-~-~~~~k~~~~~~~~~l~~~~~~~rv~lv~F~~~~~~~~~l 76 (223)
T 2b2x_A 21 TQLDIVIVLDGSNS-IY-P-WESVIAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNL 76 (223)
T ss_dssp -CEEEEEEEECSTT-CC-C-HHHHHHHHHHHHTTSCCSTTSCCEEEEEESSSEEEEECT
T ss_pred CcceEEEEEECCCC-hh-h-HHHHHHHHHHHHHhcccCCCCeEEEEEEeCCCccEEEec
Confidence 46778999999984 43 2 6788888888888876 246899999999998764 344
No 18
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=96.23 E-value=0.015 Score=41.31 Aligned_cols=54 Identities=20% Similarity=0.274 Sum_probs=40.7
Q ss_pred CceeeEEEEEcchhhhhcChHHHHHHHHHHHhhcCC-CCCceEEEEEEecCeEEE-Eec
Q psy16628 28 IFKCPLYFMVVKGYACYCKYQALQREVLLNQLKSMP-GDRRTSIAIITYDSAVHF-YSL 84 (107)
Q Consensus 28 ~~~~yvFvIDVS~~Ai~sG~l~~~~~sIk~~L~~lp-~~~~t~IgiITfDs~vhF-ynl 84 (107)
.+...+|+||+|. |+. + +..+.+.+++.++.+. ..++.+||+++|++..+. +.+
T Consensus 6 ~~~div~vlD~Sg-Sm~-~-~~~~k~~~~~~~~~l~~~~~~~~v~lv~F~~~~~~~~~l 61 (213)
T 1pt6_A 6 TQLDIVIVLDGSN-SIY-P-WDSVTAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNL 61 (213)
T ss_dssp -CEEEEEEEECCT-TCC-C-HHHHHHHHHHHHTTSCBSTTSBEEEEEEESSSEEEEECT
T ss_pred CCccEEEEEECCC-Chh-h-HHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCCccEEEec
Confidence 3678899999997 443 2 6777888888888775 246899999999998764 344
No 19
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=96.10 E-value=0.017 Score=40.12 Aligned_cols=56 Identities=11% Similarity=0.055 Sum_probs=41.6
Q ss_pred CceeeEEEEEcchhhhhcChHHHHHHHHHHHhhcCC-CCCceEEEEEEecCeEEE-Eec
Q psy16628 28 IFKCPLYFMVVKGYACYCKYQALQREVLLNQLKSMP-GDRRTSIAIITYDSAVHF-YSL 84 (107)
Q Consensus 28 ~~~~yvFvIDVS~~Ai~sG~l~~~~~sIk~~L~~lp-~~~~t~IgiITfDs~vhF-ynl 84 (107)
.+...+|+||.|..--. .-++.+.+.+++.++.++ ++.++|||+|+|++..+. +.+
T Consensus 4 ~~~div~vlD~SgSm~~-~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~f~~~~~~~~~l 61 (189)
T 1atz_A 4 QPLDVILLLDGSSSFPA-SYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSITTIDVPW 61 (189)
T ss_dssp CCEEEEEEEECSSSSCH-HHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEECT
T ss_pred CceeEEEEEeCCCCCCh-hhHHHHHHHHHHHHHhcCcCCCCeEEEEEEECCcceEEEec
Confidence 46788999999975332 345677778888888876 346799999999987763 444
No 20
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=96.07 E-value=0.04 Score=37.60 Aligned_cols=52 Identities=4% Similarity=-0.114 Sum_probs=38.4
Q ss_pred CceeeEEEEEcchhhhhcChHHHHHHHHHHHhhcCCCCCceEEEEEEecCeEEEE
Q psy16628 28 IFKCPLYFMVVKGYACYCKYQALQREVLLNQLKSMPGDRRTSIAIITYDSAVHFY 82 (107)
Q Consensus 28 ~~~~yvFvIDVS~~Ai~sG~l~~~~~sIk~~L~~lp~~~~t~IgiITfDs~vhFy 82 (107)
.+...+|+||.|..-- .. .....+.+++.+..+-. ++.+||+++|++..+..
T Consensus 6 ~~~div~vlD~SgSM~-~~-~~~~~~~~~~~~~~~~~-~~~~v~lv~f~~~~~~~ 57 (185)
T 3n2n_F 6 GGFDLYFILDKSGSVL-HH-WNEIYYFVEQLAHKFIS-PQLRMSFIVFSTRGTTL 57 (185)
T ss_dssp SEEEEEEEEECSGGGG-GG-HHHHHHHHHHHHHHCCC-TTEEEEEEEESSSEEEE
T ss_pred CCeeEEEEEeCCCChh-hh-HHHHHHHHHHHHHHhCC-CCcEEEEEEEecCceEE
Confidence 4677899999987443 32 56667777777777633 48999999999888653
No 21
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=95.74 E-value=0.051 Score=38.12 Aligned_cols=54 Identities=2% Similarity=-0.044 Sum_probs=41.3
Q ss_pred cCCceeeEEEEEcchhhhhc----ChHHHHHHHHHHHhhcCCCCCceEEEEEEecCeEEEE
Q psy16628 26 LGIFKCPLYFMVVKGYACYC----KYQALQREVLLNQLKSMPGDRRTSIAIITYDSAVHFY 82 (107)
Q Consensus 26 ~~~~~~yvFvIDVS~~Ai~s----G~l~~~~~sIk~~L~~lp~~~~t~IgiITfDs~vhFy 82 (107)
...+...+|+||+|..--.. .-+..+.+.++..++.+| +.+||+++|++..+..
T Consensus 8 ~~~~~~iv~vlD~SgSM~~~d~~~~r~~~ak~~~~~~~~~~~---~~~v~lv~F~~~~~~~ 65 (218)
T 3ibs_A 8 KRKGVEVIIALDISNSMLAQDVQPSRLEKAKRLISRLVDELD---NDKVGMIVFAGDAFTQ 65 (218)
T ss_dssp --CCCEEEEEEECSGGGGCCSSSSCHHHHHHHHHHHHHHTCS---SCEEEEEEESSSEEEE
T ss_pred ccCCCcEEEEEECCcCcccccCCcCHHHHHHHHHHHHHHhCC---CCeEEEEEECCCceEe
Confidence 34578899999999754432 257888889999998886 4799999999887644
No 22
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=95.65 E-value=0.021 Score=42.42 Aligned_cols=54 Identities=9% Similarity=-0.033 Sum_probs=41.3
Q ss_pred CceeeEEEEEcchhhhhcChHHHHHHHHHHHhhcCCC-CCceEEEEEEecCeEEE
Q psy16628 28 IFKCPLYFMVVKGYACYCKYQALQREVLLNQLKSMPG-DRRTSIAIITYDSAVHF 81 (107)
Q Consensus 28 ~~~~yvFvIDVS~~Ai~sG~l~~~~~sIk~~L~~lp~-~~~t~IgiITfDs~vhF 81 (107)
.++-.+|+||.|..--...+...+.+.++..++.+.- .++.+||+|+|++..+-
T Consensus 17 ~~~DivfvlD~SgSM~~~~~~~~~k~~~~~lv~~l~~~~~~~rvglv~Fs~~~~~ 71 (266)
T 4hqo_A 17 EQVDLYLLVDGSGSIGYPNWITKVIPMLNGLINSLSLSRDTINLYMNLFGSYTTE 71 (266)
T ss_dssp CCEEEEEEEECSTTTCHHHHHHTHHHHHHHHHHTCCBCTTSEEEEEEEESSSEEE
T ss_pred CceeEEEEEECCCCcChhHHHHHHHHHHHHHHHHcccCCCCcEEEEEEecCCcce
Confidence 5788999999997544444445677888888888862 35899999999998753
No 23
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=95.35 E-value=0.039 Score=42.40 Aligned_cols=49 Identities=8% Similarity=0.042 Sum_probs=40.6
Q ss_pred CceeeEEEEEcchhhhhcChHHHHHHHHHHHhhcCCC-CCceEEEEEEecCe
Q psy16628 28 IFKCPLYFMVVKGYACYCKYQALQREVLLNQLKSMPG-DRRTSIAIITYDSA 78 (107)
Q Consensus 28 ~~~~yvFvIDVS~~Ai~sG~l~~~~~sIk~~L~~lp~-~~~t~IgiITfDs~ 78 (107)
.+..++|+||.|..-- +=++.+.+++++.+.+++. ..+.+||+|+|.+.
T Consensus 133 ~~~~vvfLVDtSgSM~--~kl~~vk~al~~Ll~sl~~~~~~~~VavV~F~~~ 182 (242)
T 3rag_A 133 VALHLVVCLDTSASMR--DKIPTVREAVRDLALSLKVRSGPLAVSVIAFPGK 182 (242)
T ss_dssp SCEEEEEEEECSGGGT--TTHHHHHHHHHHHHHHHTTSSSCEEEEEEEESCS
T ss_pred CCCCEEEEEECcccHH--HHHHHHHHHHHHHHHHHhccCCCcEEEEEEECCC
Confidence 5788999999998653 4589999999999987763 35899999999974
No 24
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=95.17 E-value=0.033 Score=44.36 Aligned_cols=56 Identities=13% Similarity=0.011 Sum_probs=41.6
Q ss_pred ccCCceeeEEEEEcchhhhhcChHHHHHHHHHHHhhcCCC-CCceEEEEEEecCeEEE
Q psy16628 25 ELGIFKCPLYFMVVKGYACYCKYQALQREVLLNQLKSMPG-DRRTSIAIITYDSAVHF 81 (107)
Q Consensus 25 ~~~~~~~yvFvIDVS~~Ai~sG~l~~~~~sIk~~L~~lp~-~~~t~IgiITfDs~vhF 81 (107)
++...+..+|+||+|..--.. =++.+.+.++..++.+.. .++.+||+|+|++..+.
T Consensus 5 ~~~~~~divfvlD~SgSM~~~-~~~~~k~~~~~l~~~l~~~~~~~rv~lv~f~~~~~~ 61 (509)
T 2odp_A 5 QRSGHLNLYLLLDASQSVSEN-DFLIFKESASLMVDRIFSFEINVSVAIITFASEPKV 61 (509)
T ss_dssp CSSSEEEEEEEEECSTTSCHH-HHHHHHHHHHHHHHHHHTTCCCEEEEEEEESSSEEE
T ss_pred cCCCCeeEEEEEeCCCccchh-hHHHHHHHHHHHHHHhhccCCCceEEEEEccCCCce
Confidence 455688899999998754332 346777888888777632 24799999999998865
No 25
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=94.53 E-value=0.14 Score=41.70 Aligned_cols=53 Identities=8% Similarity=0.062 Sum_probs=42.4
Q ss_pred CceeeEEEEEcchhhhh-cChHHHHHHHHHHHhhcCCCCCceEEEEEEecCeEEEE
Q psy16628 28 IFKCPLYFMVVKGYACY-CKYQALQREVLLNQLKSMPGDRRTSIAIITYDSAVHFY 82 (107)
Q Consensus 28 ~~~~yvFvIDVS~~Ai~-sG~l~~~~~sIk~~L~~lp~~~~t~IgiITfDs~vhFy 82 (107)
-+...+|+||+|..--. ..-+..+.++++..+++++. +.++|+|+|++..+.+
T Consensus 76 ~~~dvv~VLD~SGSM~~~~~rl~~ak~a~~~ll~~L~~--~drv~lV~Fs~~a~~~ 129 (464)
T 4fx5_A 76 SENVEVIIIDCSGSMDYPRTKMMAAKEATKVAIDTLTD--GAFFAVVAGTEGARVV 129 (464)
T ss_dssp CCEEEEEEEECCGGGGTTTHHHHHHHHHHHHHHHHSCT--TCEEEEEEESSSEEEE
T ss_pred CCceEEEEEEcCcccCCCCchHHHHHHHHHHHHHhCCC--CCEEEEEEEcCceEEE
Confidence 35789999999975431 23477888999999999975 7799999999998765
No 26
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=94.40 E-value=0.18 Score=34.11 Aligned_cols=51 Identities=6% Similarity=0.029 Sum_probs=34.6
Q ss_pred CceeeEEEEEcchhhhhcChHHHHHHHHHHHhhcCCCCCceEEEEEEecCeEEE
Q psy16628 28 IFKCPLYFMVVKGYACYCKYQALQREVLLNQLKSMPGDRRTSIAIITYDSAVHF 81 (107)
Q Consensus 28 ~~~~yvFvIDVS~~Ai~sG~l~~~~~sIk~~L~~lp~~~~t~IgiITfDs~vhF 81 (107)
.+...+|++|.|..--.+ .. ...+.+++.+..+-+ ++.+||+++|++..+.
T Consensus 5 ~~~dvv~vlD~SgSM~~~-~~-~~~~~~~~~~~~~~~-~~~~v~lv~f~~~~~~ 55 (182)
T 1shu_X 5 RAFDLYFVLDKSGSVANN-WI-EIYNFVQQLAERFVS-PEMRLSFIVFSSQATI 55 (182)
T ss_dssp SCEEEEEEEECSGGGGGG-HH-HHHHHHHHHHHHCCC-TTEEEEEEEESSSEEE
T ss_pred CceeEEEEEECCCCcccC-HH-HHHHHHHHHHHHhcC-CCceEEEEEeCCCceE
Confidence 467889999999754322 22 244555555555433 5799999999988754
No 27
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=94.26 E-value=0.046 Score=37.72 Aligned_cols=48 Identities=13% Similarity=0.118 Sum_probs=35.2
Q ss_pred CCceeeEEEEEcchhhhhcChHHHHHHHHHHHhhcC-CCCCceEEEEEEecC
Q psy16628 27 GIFKCPLYFMVVKGYACYCKYQALQREVLLNQLKSM-PGDRRTSIAIITYDS 77 (107)
Q Consensus 27 ~~~~~yvFvIDVS~~Ai~sG~l~~~~~sIk~~L~~l-p~~~~t~IgiITfDs 77 (107)
..+...+|+||+|..- ...-+..+.+.++..++.+ +. +.+||+|+|++
T Consensus 3 ~~~~~vv~vlD~SgSM-~~~~~~~~k~~~~~~~~~~~~~--~~~v~lv~f~~ 51 (189)
T 2x31_A 3 MSDRVLIFAVDASGSA-AVARLSEAKGAVELLLGRAYAA--RDHVSLITFRG 51 (189)
T ss_dssp SSCCEEEEEEECCTTS-CC--CHHHHHHHHHHHHHSCTT--TSCCCEEEESB
T ss_pred CCCeEEEEEEECCCCC-CchHHHHHHHHHHHHHHHhcCC--CcEEEEEEECC
Confidence 4567889999999754 2234567777888888776 43 78999999996
No 28
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=93.71 E-value=0.061 Score=44.66 Aligned_cols=54 Identities=9% Similarity=0.033 Sum_probs=39.2
Q ss_pred cCCceeeEEEEEcchhhhhcChHHHHHHHHHHHhhcCCC-CCceEEEEEEecCeEE
Q psy16628 26 LGIFKCPLYFMVVKGYACYCKYQALQREVLLNQLKSMPG-DRRTSIAIITYDSAVH 80 (107)
Q Consensus 26 ~~~~~~yvFvIDVS~~Ai~sG~l~~~~~sIk~~L~~lp~-~~~t~IgiITfDs~vh 80 (107)
+..++-.+|+||.|..--.. -++.+.+.+++.+++++. +.+.|||+|+|++..+
T Consensus 240 ~~~~~div~vlD~SgSM~~~-~~~~~k~~~~~~i~~l~~~~~~~rv~lv~f~~~~~ 294 (741)
T 3hrz_D 240 PSGSMNIYLVLDGSGSIGAS-DFTGAKKCLVNLIEKVASYGVKPRYGLVTYATYPK 294 (741)
T ss_dssp TTCEEEEEEEEECSTTTCHH-HHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEE
T ss_pred CCCceeEEEEeccCCccccc-chHHHHHHHHHHHHhhhccCCCceEEEEEeccCCc
Confidence 44578899999998643222 356677777777776653 4579999999998654
No 29
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=93.70 E-value=0.072 Score=42.10 Aligned_cols=52 Identities=10% Similarity=0.071 Sum_probs=36.7
Q ss_pred ceeeEEEEEcchhhhhcChHHHHHHHHHHHhhcCCC-CCceEEEEEEecCeEEE
Q psy16628 29 FKCPLYFMVVKGYACYCKYQALQREVLLNQLKSMPG-DRRTSIAIITYDSAVHF 81 (107)
Q Consensus 29 ~~~yvFvIDVS~~Ai~sG~l~~~~~sIk~~L~~lp~-~~~t~IgiITfDs~vhF 81 (107)
++..+|+||+|..--. .-++.+.+.++..++.++. +.+.+||+|+|++..+.
T Consensus 1 ~~div~vlD~SgSM~~-~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~ 53 (497)
T 1rrk_A 1 SMNIYLVLDGSDSIGA-SNFTGAKKVLVNLIEKVASYGVKPRYGLVTYATYPKI 53 (497)
T ss_dssp CEEEEEEEECSTTTCH-HHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEE
T ss_pred CeeEEEEEECCCCcch-hhHHHHHHHHHHHHHHhhccCCCceEEEEEecCCceE
Confidence 3567999999875322 2456666777777766543 45799999999987654
No 30
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=91.88 E-value=0.33 Score=43.60 Aligned_cols=51 Identities=6% Similarity=0.088 Sum_probs=40.3
Q ss_pred ceeeEEEEEcchhhhhcChHHHHHHHHHHHhhcCCCCCceEEEEEEecCeEEE
Q psy16628 29 FKCPLYFMVVKGYACYCKYQALQREVLLNQLKSMPGDRRTSIAIITYDSAVHF 81 (107)
Q Consensus 29 ~~~yvFvIDVS~~Ai~sG~l~~~~~sIk~~L~~lp~~~~t~IgiITfDs~vhF 81 (107)
++--+|+||.|.. +...-++.+.+.+++.++.+. .+++|||+|+|++..+-
T Consensus 130 ~~DIvfvlD~SgS-m~~~~f~~~k~fv~~lv~~~~-~~~~rVglV~Fs~~~~~ 180 (1095)
T 3k6s_A 130 EQDIVFLIDGSGS-ISSRNFATMMNFVRAVISQFQ-RPSTQFSLMQFSNKFQT 180 (1095)
T ss_dssp CEEEEEEEECCTT-SCSHHHHHHHHHHHHHHHSSC-SSSEEEEEEEESSSEEE
T ss_pred CccEEEEEcCCCC-CChhHHHHHHHHHHHHHHhcc-ccccEEEEEEECCeEEE
Confidence 5678999999854 444346778888999998887 35799999999988754
No 31
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=91.25 E-value=0.24 Score=43.93 Aligned_cols=54 Identities=11% Similarity=0.143 Sum_probs=38.2
Q ss_pred cCCceeeEEEEEcchhhhhcCh-----HHHHHHHHHHHhhcCCCCCceEEEEEEecCeE
Q psy16628 26 LGIFKCPLYFMVVKGYACYCKY-----QALQREVLLNQLKSMPGDRRTSIAIITYDSAV 79 (107)
Q Consensus 26 ~~~~~~yvFvIDVS~~Ai~sG~-----l~~~~~sIk~~L~~lp~~~~t~IgiITfDs~v 79 (107)
...+.-.+|+||+|..--.... +..+.++++..|+.+...++.|||+|+|++.+
T Consensus 221 ~~~~~DIVfVLD~SGSM~~~~~~~~~Rl~~~K~a~~~~ld~L~~~~~drVgLV~Fs~~a 279 (893)
T 2ww8_A 221 KSVPLDVVILLDNSNSMSNIRNKNARRAERAGEATRSLIDKITSDSENRVALVTYASTI 279 (893)
T ss_dssp TTCCEEEEEEEECCGGGCTTHHHHCCHHHHHHHHHHHHHHHHHTSTTCEEEEEEESSSB
T ss_pred cCCCccEEEEEeCCCCCCCcCccchhHHHHHHHHHHHHHHHhhcCCCcEEEEEEecCcc
Confidence 3467889999999975433321 34566677777776644457999999999864
No 32
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=86.68 E-value=0.72 Score=33.09 Aligned_cols=48 Identities=6% Similarity=0.131 Sum_probs=30.2
Q ss_pred eeeEEEEEcchhhhhcCh----HHHHHHHHHHHhhcC-CCCCceEEEEEEecC
Q psy16628 30 KCPLYFMVVKGYACYCKY----QALQREVLLNQLKSM-PGDRRTSIAIITYDS 77 (107)
Q Consensus 30 ~~yvFvIDVS~~Ai~sG~----l~~~~~sIk~~L~~l-p~~~~t~IgiITfDs 77 (107)
-+-+|+||+|..-.+..+ +..+.+.++..+... ...++.+||+|+|..
T Consensus 3 e~lvlvlD~S~SM~~~D~~psRl~~ak~~~~~~~~~~~~~~~~d~vGLV~fa~ 55 (192)
T 2x5n_A 3 EATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGD 55 (192)
T ss_dssp EEEEEEECCSGGGGCTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCT
T ss_pred eEEEEEEECCHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcC
Confidence 356899999987654333 444555555443321 113458999999987
No 33
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.58 E-value=0.49 Score=36.40 Aligned_cols=47 Identities=6% Similarity=0.055 Sum_probs=31.2
Q ss_pred eeEEEEEcchhhhhc----ChHHHHHHHHHHHhhcCCC-CCceEEEEEEecC
Q psy16628 31 CPLYFMVVKGYACYC----KYQALQREVLLNQLKSMPG-DRRTSIAIITYDS 77 (107)
Q Consensus 31 ~yvFvIDVS~~Ai~s----G~l~~~~~sIk~~L~~lp~-~~~t~IgiITfDs 77 (107)
+-+||||+|..-... .=+.++.++++..++.+.+ ++..+||+|||..
T Consensus 5 AtViviD~S~SM~~~D~~PsRl~a~k~Av~~li~~~~~~nPed~VGLVtfag 56 (268)
T 4b4t_W 5 ATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAG 56 (268)
T ss_dssp EEEEEECCSSTTSSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCT
T ss_pred eEEEEEECCHHHhCCCCCCcHHHHHHHHHHHHHHHHhhCCCcceEEEEEecC
Confidence 568999999875422 1355666666666654322 4468999999953
No 34
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=79.74 E-value=4.9 Score=33.61 Aligned_cols=50 Identities=8% Similarity=0.097 Sum_probs=35.6
Q ss_pred eeeEEEEEcchhhhhcC------hHHHHHHHHHHHhhcC-CCCCceEEEEEEecCeE
Q psy16628 30 KCPLYFMVVKGYACYCK------YQALQREVLLNQLKSM-PGDRRTSIAIITYDSAV 79 (107)
Q Consensus 30 ~~yvFvIDVS~~Ai~sG------~l~~~~~sIk~~L~~l-p~~~~t~IgiITfDs~v 79 (107)
=+-+|+||||..-.+.. -+..+.+.+...+.+. -..++-+||+|.|.+.-
T Consensus 36 e~ivf~IDvS~SM~~~d~~~~~srl~~a~~~v~~~i~~kii~~~~D~vGlVlfgt~~ 92 (609)
T 1jey_A 36 DSLIFLVDASKAMFESQSEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEK 92 (609)
T ss_dssp EEEEEEEECSGGGGCCCSSSSCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSS
T ss_pred eEEEEEEECCHHHcCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCeEEEEEEccCC
Confidence 46899999998654432 5888888888887641 11234799999998764
No 35
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=78.03 E-value=5.6 Score=32.82 Aligned_cols=49 Identities=10% Similarity=0.089 Sum_probs=34.7
Q ss_pred eeeEEEEEcchhhhhc-----ChHHHHHHHHHHHhhcC-CCCCceEEEEEEecCe
Q psy16628 30 KCPLYFMVVKGYACYC-----KYQALQREVLLNQLKSM-PGDRRTSIAIITYDSA 78 (107)
Q Consensus 30 ~~yvFvIDVS~~Ai~s-----G~l~~~~~sIk~~L~~l-p~~~~t~IgiITfDs~ 78 (107)
-+-+|+||+|..-.+. .-+..+.+++...+.+. -..++-+||+|+|.+.
T Consensus 8 e~iv~~iDvS~SM~~~d~~~~srl~~ak~~i~~~i~~ki~~~~~D~vGlv~f~~~ 62 (565)
T 1jey_B 8 AAVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTD 62 (565)
T ss_dssp EEEEEEEECCGGGGCCBTTBCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCS
T ss_pred eEEEEEEECChHhcccCCCCCCcHHHHHHHHHHHHHHHhcCCCCCEEEEEEEccC
Confidence 4679999999864432 35777888888888631 1234689999999753
No 36
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=70.28 E-value=6.4 Score=29.18 Aligned_cols=48 Identities=15% Similarity=0.043 Sum_probs=28.6
Q ss_pred ceeeEEEEEcchhhhhcChHHHHHHHHHHHhhcCCC-CCceEEEEEEecCe
Q psy16628 29 FKCPLYFMVVKGYACYCKYQALQREVLLNQLKSMPG-DRRTSIAIITYDSA 78 (107)
Q Consensus 29 ~~~yvFvIDVS~~Ai~sG~l~~~~~sIk~~L~~lp~-~~~t~IgiITfDs~ 78 (107)
|.-.+|++|+|..=- +.++.+.+.+.+..+.|.+ .++.|+||.+|=..
T Consensus 3 pvDl~fl~D~S~SM~--~di~~lk~~~~~l~~~l~~~~~~~r~Gfg~f~Dk 51 (212)
T 2iue_A 3 SVDLYFLMGLSGSAQ--GHLSNVQTLGSDLLKALNEISRSGRIGFGSIVNM 51 (212)
T ss_dssp CEEEEEEEECCGGGT--TTHHHHHHHHHHHHHHHHHHCSCEEEEEEEESSS
T ss_pred ceEEEEEEeCCCcch--hHHHHHHHHHHHHHHHHHhhCcCceEEEEEEEcC
Confidence 556789999986433 2344444444433333322 34799999988443
No 37
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=50.86 E-value=7.6 Score=31.70 Aligned_cols=55 Identities=7% Similarity=-0.097 Sum_probs=30.6
Q ss_pred CCceeeEEEEEcchhhhhc----ChHHHHHHHHHHHhhcCCCCCceEEEEEEecCeEEEEec
Q psy16628 27 GIFKCPLYFMVVKGYACYC----KYQALQREVLLNQLKSMPGDRRTSIAIITYDSAVHFYSL 84 (107)
Q Consensus 27 ~~~~~yvFvIDVS~~Ai~s----G~l~~~~~sIk~~L~~lp~~~~t~IgiITfDs~vhFynl 84 (107)
......+|+||+|..-... .+.. .-.+...++..... +.+||+|+|++.+....+
T Consensus 366 ~~~~~v~lvvD~SgSM~~~~~~~~l~~-~~~Aa~l~~~~~~~--~d~vglv~Fs~~~~~~~~ 424 (538)
T 1yvr_A 366 PTGKRFLLAIDVSASMNQRVLGSILNA-SVVAAAMCMLVART--EKDSHMVAFSDEMLPCPI 424 (538)
T ss_dssp CCCCCEEEEEECSGGGGSBSTTSSCBH-HHHHHHHHHHHHHH--CSSEEEEEESSSEECCSC
T ss_pred CCCceEEEEEECccccCCCCCCCcHHH-HHHHHHHHHHHhcc--CCceEEEEECCCceEcCC
Confidence 5678999999998753321 1211 11111112222222 468999999987665433
No 38
>1b3t_A Protein (nuclear protein EBNA1); protein-DNA complex, DNA-binding, activator, origin-binding protein, protein/DNA complex; HET: DNA; 2.20A {Human herpesvirus 4} SCOP: d.58.8.1 PDB: 1vhi_A
Probab=50.83 E-value=21 Score=25.30 Aligned_cols=31 Identities=10% Similarity=0.363 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhhcCCCC-CceEEEEEEecCeE
Q psy16628 49 ALQREVLLNQLKSMPGD-RRTSIAIITYDSAV 79 (107)
Q Consensus 49 ~~~~~sIk~~L~~lp~~-~~t~IgiITfDs~v 79 (107)
+.+.++|+.-+..-|.+ .+++|.+++||..|
T Consensus 113 e~~kDAi~Dyi~t~P~PT~~~~VtvcsFdd~V 144 (147)
T 1b3t_A 113 EVLKDAIKDLVMTKPAPTCNIRVTVCSFDDGV 144 (147)
T ss_dssp HHHHHHHHHHHHTSCTTGGGEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhCCCCCCcceEEEEEeCCCCc
Confidence 45666777777666763 68999999999765
No 39
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=43.56 E-value=30 Score=28.72 Aligned_cols=46 Identities=11% Similarity=-0.019 Sum_probs=29.5
Q ss_pred CCceeeEEEEEcchhhhhcChH---HHHHHHHHHHhhcCCCCCceEEEEEEec
Q psy16628 27 GIFKCPLYFMVVKGYACYCKYQ---ALQREVLLNQLKSMPGDRRTSIAIITYD 76 (107)
Q Consensus 27 ~~~~~yvFvIDVS~~Ai~sG~l---~~~~~sIk~~L~~lp~~~~t~IgiITfD 76 (107)
+-|.-.+|++|+|. |.+. -+ ..+...|.+.|.++. ++.|+||..|=
T Consensus 109 ~ypvDLy~LmDlS~-SM~d-dl~~lk~lg~~L~~~l~~~t--~~~riGfgsFv 157 (472)
T 3t3p_B 109 DYPVDIYYLMDLSY-SMKD-DLWSIQNLGTKLATQMRKLT--SNLRIGFGAFV 157 (472)
T ss_dssp SCCEEEEEEEECSG-GGHH-HHHHTTTHHHHHHHHHTTTC--SCEEEEEEEEC
T ss_pred CCCceEEEEEccCc-chHH-HHHHHHHHHHHHHHHHHhcC--cCcEEEEEEee
Confidence 34778899999995 3422 22 334444555555554 48999999993
No 40
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Probab=40.99 E-value=46 Score=27.89 Aligned_cols=47 Identities=15% Similarity=0.089 Sum_probs=29.7
Q ss_pred cCCceeeEEEEEcchhhhhc--ChHHHHHHHHHHHhhcCCCCCceEEEEEEe
Q psy16628 26 LGIFKCPLYFMVVKGYACYC--KYQALQREVLLNQLKSMPGDRRTSIAIITY 75 (107)
Q Consensus 26 ~~~~~~yvFvIDVS~~Ai~s--G~l~~~~~sIk~~L~~lp~~~~t~IgiITf 75 (107)
++-|.-.+|++|+|. |.+. --+..+...|.+.|.++. ++-|+||..|
T Consensus 129 ~~yPVDLyyLmDlS~-SM~ddl~~lk~lg~~L~~~l~~~t--~~~RiGfGsF 177 (503)
T 3v4v_B 129 EGYPVDLYYLMDLSY-SMKDDLERVRQLGHALLVRLQEVT--HSVRIGFGSF 177 (503)
T ss_dssp SSCCEEEEEEEECSG-GGHHHHHHHHHSSHHHHHHHTTTC--SCEEEEEEEE
T ss_pred CCCceeEEEEEecCc-chhhHHHHHHHHHHHHHHHHHhhC--cCcEEeeeee
Confidence 344788899999995 4422 122333344445555553 4899999999
No 41
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B*
Probab=35.05 E-value=75 Score=26.22 Aligned_cols=47 Identities=11% Similarity=0.036 Sum_probs=29.9
Q ss_pred CCceeeEEEEEcchhhhhc--ChHHHHHHHHHHHhhcCCCCCceEEEEEEec
Q psy16628 27 GIFKCPLYFMVVKGYACYC--KYQALQREVLLNQLKSMPGDRRTSIAIITYD 76 (107)
Q Consensus 27 ~~~~~yvFvIDVS~~Ai~s--G~l~~~~~sIk~~L~~lp~~~~t~IgiITfD 76 (107)
+-|.-.+|++|+|. |.+. .-+......|.+.|.++.. +.|+||..|=
T Consensus 120 ~yPVDLyyLmDlS~-SM~ddl~~lk~lg~~L~~~l~~~t~--~~riGfGsFv 168 (454)
T 3vi3_B 120 DYPIDLYYLMDLSY-SMKDDLENVKSLGTDLMNEMRRITS--DFRIGFGSFV 168 (454)
T ss_dssp CCCEEEEEEEECSG-GGHHHHHHHTTHHHHHHHHHTTTCS--SEEEEEEEEC
T ss_pred CCceeEEEEecCCc-chhhHHHHHHHHHHHHHHHHHhcCC--CeEEEEEEEe
Confidence 34778899999995 4422 1233344455555555544 8999999984
No 42
>1xak_A SARS ORF7A accessory protein; I-SET IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Sars coronavirus} SCOP: b.1.24.1 PDB: 1yo4_A
Probab=32.11 E-value=20 Score=22.86 Aligned_cols=31 Identities=26% Similarity=0.333 Sum_probs=21.0
Q ss_pred ceEEEEEEecCeEEEEecCCCCCCccEEEeC
Q psy16628 67 RTSIAIITYDSAVHFYSLAEGQTQPSQMILT 97 (107)
Q Consensus 67 ~t~IgiITfDs~vhFynl~~~l~~pqmlVVs 97 (107)
+++.+|.+-|.+=|-|+|+..+-.|+.++-.
T Consensus 47 ~t~f~f~c~d~trh~~qlrarsisp~lf~~~ 77 (83)
T 1xak_A 47 STHFAFACADGTRHTYQLRARSVSPKLFIRQ 77 (83)
T ss_dssp SEEEEEECTTSCEEEEEEEEECC--------
T ss_pred cceEEEEEcCCCceeeeeeecccCcccccCh
Confidence 6899999999999999998877778776543
No 43
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=30.27 E-value=35 Score=29.36 Aligned_cols=47 Identities=11% Similarity=-0.064 Sum_probs=28.0
Q ss_pred CCceeeEEEEEcchhhhhcChHH---HHHHHHHHHhhcCCCCCceEEEEEEecC
Q psy16628 27 GIFKCPLYFMVVKGYACYCKYQA---LQREVLLNQLKSMPGDRRTSIAIITYDS 77 (107)
Q Consensus 27 ~~~~~yvFvIDVS~~Ai~sG~l~---~~~~sIk~~L~~lp~~~~t~IgiITfDs 77 (107)
..|.-.+|++|+|..-- . .++ .....|.+.|.++. ++.|+||..|-.
T Consensus 109 ~~pvDly~LmD~S~SM~-d-di~~lk~l~~~l~~~l~~~t--~~~r~Gfgsf~D 158 (690)
T 3fcs_B 109 DYPVDIYYLMDLSYSMK-D-DLWSIQNLGTKLATQMRKLT--SNLRIGFGAFVD 158 (690)
T ss_dssp TCCEEEEEEEECSGGGH-H-HHHHTTTTTHHHHHHHHHHC--SCEEEEEEEECC
T ss_pred CCCccEEEEecCCcchH-H-HHHHHHHHHHHHHHHHHhhC--cCceEEeEEeec
Confidence 34777899999995432 1 222 22233333444443 379999999954
No 44
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=25.46 E-value=27 Score=30.09 Aligned_cols=48 Identities=13% Similarity=-0.010 Sum_probs=28.6
Q ss_pred CceeeEEEEEcchhhhh-cChHHHHHHHHHHHhhcCCCCCceEEEEEEecC
Q psy16628 28 IFKCPLYFMVVKGYACY-CKYQALQREVLLNQLKSMPGDRRTSIAIITYDS 77 (107)
Q Consensus 28 ~~~~yvFvIDVS~~Ai~-sG~l~~~~~sIk~~L~~lp~~~~t~IgiITfDs 77 (107)
.|.-.+|++|+|..--. -.-+......|.+.|.++.. +.|+||..|-.
T Consensus 103 ypvDly~LmD~S~SM~ddi~~lk~l~~~l~~~l~~~t~--~~r~GfgsFvD 151 (687)
T 3k6s_B 103 YPIDLYYLMDLSYSMLDDLRNVKKLGGDLLRALNEITE--SGRIGFGSFVD 151 (687)
T ss_dssp CCCEEEEEEECSSTTHHHHHTTTTCCTTHHHHHHSSCC--SCEEEEEEECC
T ss_pred CceeEEEEEcCCcchHHHHHHHHHHHHHHHHHHHhhCc--CcEEeeEEeec
Confidence 36778899999953321 00112223344445555544 79999999953
No 45
>1vs6_Z 50S ribosomal protein L31; ribosome, kasugamycin; 3.46A {Escherichia coli} SCOP: d.325.1.2 PDB: 1vs8_Z 2aw4_Z 2awb_Z 2j28_Z 2rdo_Z 2vhm_Z 2vhn_Z 3bbx_Z 3e1b_S 3e1d_S 3iyx_A 3iyy_A 3izt_b* 3izu_b* 3j0t_2* 3j0w_2* 3j0y_2* 3j11_2* 3j12_2* 3j14_2*
Probab=24.82 E-value=19 Score=22.40 Aligned_cols=16 Identities=19% Similarity=0.289 Sum_probs=13.2
Q ss_pred EEecccccCCCceeee
Q psy16628 7 EFRTLHLSNSHAYYTI 22 (107)
Q Consensus 7 ~~~~~~~~~~~~~~~~ 22 (107)
|.+++--|.+||+|+=
T Consensus 31 ei~vdi~s~~HPFyTG 46 (70)
T 1vs6_Z 31 DLNLDVCSKCHPFFTG 46 (70)
T ss_dssp CCCCBCCSSSCCBCCC
T ss_pred cEeeeecCCCCccCcC
Confidence 4677778999999985
No 46
>3v2d_4 50S ribosomal protein L31; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_3 2hgj_3 2hgu_3 2j03_4 2v47_4 2v49_4 2wdi_4 2wdj_4 2wdl_4 2wdn_4 2wh2_4 2wrj_4 2wrl_4 2wro_4 2wrr_4 2x9s_4 2x9u_4 2xg0_4 2xg2_4 2xqe_4 ...
Probab=23.56 E-value=30 Score=21.67 Aligned_cols=16 Identities=31% Similarity=0.351 Sum_probs=13.3
Q ss_pred EEecccccCCCceeee
Q psy16628 7 EFRTLHLSNSHAYYTI 22 (107)
Q Consensus 7 ~~~~~~~~~~~~~~~~ 22 (107)
+.+++--|.+||+|+=
T Consensus 30 ~i~vdi~S~~HPFyTG 45 (71)
T 3v2d_4 30 EIYVEVCSKCHPFYTG 45 (71)
T ss_dssp EEEESCCTTTSSSSSC
T ss_pred CEEEEecCCCCCCCCC
Confidence 5677888999999983
No 47
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=23.44 E-value=73 Score=26.02 Aligned_cols=55 Identities=7% Similarity=0.060 Sum_probs=30.2
Q ss_pred CCceeeEEEEEcchhhhhcC------hH-HHHHHHHHHHhhcCCCCCceEEEEEEecCeEEEEecC
Q psy16628 27 GIFKCPLYFMVVKGYACYCK------YQ-ALQREVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLA 85 (107)
Q Consensus 27 ~~~~~yvFvIDVS~~Ai~sG------~l-~~~~~sIk~~L~~lp~~~~t~IgiITfDs~vhFynl~ 85 (107)
.....++.++|+|..=...+ .. ..++-++. +-.... +.++|+++|++.+....+.
T Consensus 360 ~~~~~~lv~vDvSgSM~~~~~~~~~k~~~~e~Aa~la--~~~~r~--~d~v~lv~Fs~~~~~~~~~ 421 (535)
T 2nvo_A 360 PANTRHLLALDVSGSMTCGDVAGVPGLTPNMAAAAMS--LIALRT--EPDALTMGFAEQFRPLGIT 421 (535)
T ss_dssp CCCSEEEEEECCSGGGGSCCGGGCTTCCHHHHHHHHH--HHHHHH--SSEEEEEEEBSSEEECCCC
T ss_pred CCCceEEEEEECCccccCCCCCCCCcccHHHHHHHHH--HHHcCc--CCceEEEEECCcceEcCCC
Confidence 45678899999997532202 11 11111221 111212 3489999999987654443
No 48
>3l7h_A RE64145P, roadblock; LC7, KM23, dynein, light chain, hydrolase, protei transport; 1.95A {Drosophila melanogaster} SCOP: d.110.7.1 PDB: 3l9k_A 1z09_A 2e8j_A 1y4o_A
Probab=21.67 E-value=75 Score=20.62 Aligned_cols=65 Identities=11% Similarity=0.072 Sum_probs=42.6
Q ss_pred eeeeecccCCceeeEEEEEcchhhhhcChHHHHHHHHHHHhhcCCCCCceEEEEEEecCeEEEEecCCCCCCccEEEeCC
Q psy16628 19 YYTIVWELGIFKCPLYFMVVKGYACYCKYQALQREVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTD 98 (107)
Q Consensus 19 ~~~~~~~~~~~~~yvFvIDVS~~Ai~sG~l~~~~~sIk~~L~~lp~~~~t~IgiITfDs~vhFynl~~~l~~pqmlVVsD 98 (107)
=|.+.++.|.|...- +|-.......+++..++..-++.+..+.. ++.+.|-.++.. ....+|.+|
T Consensus 20 G~iI~n~~G~pirst--~d~~~~~~yA~~~~~L~~~a~~~vrdlDp-----------~del~fLRiRTk--k~EimIaPd 84 (97)
T 3l7h_A 20 GTIVVNNEGIPVKST--LDNTTTVQYAGLMSQLADKARSVVRDLDP-----------SNDMTFLRVRSK--KHEIMVAPD 84 (97)
T ss_dssp EEEEEETTSCEEEES--SCHHHHHHHHHHHHHHHHHHHHHHHHHCT-----------TCCEEEEEEEES--SCEEEEEEE
T ss_pred EEEEECCCCCEeEEe--CChHHHHHHHHHHHHHHHHHHHHHHhcCC-----------CCCeEEEEEEeC--CcEEEEEcC
Confidence 367888889887653 35554445567777777777777766632 466777777653 346777766
Done!