RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16628
         (107 letters)



>d1pd0a3 c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 252

 Score = 50.7 bits (121), Expect = 2e-09
 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 10/86 (11%)

Query: 32  PLYFMV--VKGYACYCKYQALQREVLLNQLKSMPG-DRRTSIAIITYDSAVHFYSL---- 84
             Y  +  V   +      A     LL  L S+P  D RT I+I+  D+A+H++ +    
Sbjct: 4   ATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDS 63

Query: 85  ---AEGQTQPSQMILTDIDDIFLPSP 107
               E   Q + M + D+++ FLP P
Sbjct: 64  ENNEESADQINMMDIADLEEPFLPRP 89


>d2qtva3 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 271

 Score = 36.9 bits (85), Expect = 2e-04
 Identities = 11/86 (12%), Positives = 25/86 (29%), Gaps = 32/86 (37%)

Query: 52  REVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAE------------------------- 86
           +E ++  L  +P +    I +ITY + V  + L+                          
Sbjct: 22  KESIITSLSLLPPNAL--IGLITYGNVVQLHDLSSETIDRCNVFRGDREYQLEALTEMLT 79

Query: 87  -----GQTQPSQMILTDIDDIFLPSP 107
                G    +  +   ++ +   S 
Sbjct: 80  GQKPTGPGGAASHLPNAMNKVTPFSL 105


>d1xfja_ d.194.1.2 (A:) Hypothetical protein CC0490 {Caulobacter
           crescentus [TaxId: 155892]}
          Length = 256

 Score = 25.3 bits (54), Expect = 1.8
 Identities = 12/56 (21%), Positives = 19/56 (33%)

Query: 28  IFKCPLYFMVVKGYACYCKYQALQREVLLNQLKSMPGDRRTSIAIITYDSAVHFYS 83
              CP      K  A   K        +L++L +   +RR  +   T      F+S
Sbjct: 179 EADCPGSGRFFKPGASEDKRFFDLPAFVLDRLATAGVERREWVGRDTRAEEEWFFS 234


>d1lgta1 d.32.1.3 (A:2-132) 2,3-Dihydroxybiphenyl dioxygenase
          (DHBD, BPHC enzyme) {Burkholderia cepacia, formerly
          Pseudomonas cepacia [TaxId: 292]}
          Length = 131

 Score = 24.5 bits (52), Expect = 2.9
 Identities = 6/44 (13%), Positives = 14/44 (31%)

Query: 2  GLGYVEFRTLHLSNSHAYYTIVWELGIFKCPLYFMVVKGYACYC 45
           LGY+ F    ++   ++ T    L          + +  +   
Sbjct: 4  SLGYMGFAVSDVAAWRSFLTQKLGLMEAGTTDNGDLFRIDSRAW 47


>d1iyka2 d.108.1.2 (A:225-451) N-myristoyl transferase, NMT {Yeast
           (Candida albicans) [TaxId: 5476]}
          Length = 227

 Score = 24.4 bits (53), Expect = 3.0
 Identities = 6/47 (12%), Positives = 16/47 (34%), Gaps = 2/47 (4%)

Query: 19  YYTIVWELGIFKCPLYFMVVKGYACYCKYQALQREVLLNQLKSMPGD 65
           YY + +   +     +  +   Y  Y    + ++     +L  +  D
Sbjct: 110 YYLLPFT--VLDNAQHDELGIAYLFYYASDSFEKPNYKKRLNELITD 154


>d1kw3b1 d.32.1.3 (B:1-132) 2,3-Dihydroxybiphenyl dioxygenase
          (DHBD, BPHC enzyme) {Pseudomonas sp. [TaxId: 306]}
          Length = 132

 Score = 24.2 bits (51), Expect = 3.2
 Identities = 7/47 (14%), Positives = 13/47 (27%), Gaps = 2/47 (4%)

Query: 1  MGLGYVEFRTLHLSNSHAYYTIVWELGIFKCPLYFMVVKGYACYCKY 47
            LGY+ F    +     + T    +G+             A    +
Sbjct: 3  ERLGYLGFAVKDVPAWDHFLTKS--VGLMAAGSAGDAALYRADQRAW 47


>d1mpya1 d.32.1.3 (A:1-145) Catechol 2,3-dioxygenase
          (metapyrocatechase) {Pseudomonas putida, mt2 [TaxId:
          303]}
          Length = 145

 Score = 24.2 bits (51), Expect = 4.1
 Identities = 8/26 (30%), Positives = 14/26 (53%)

Query: 1  MGLGYVEFRTLHLSNSHAYYTIVWEL 26
          M  G+V+ R L +S +  +Y  +  L
Sbjct: 6  MRPGHVQLRVLDMSKALEHYVELLGL 31


>d1kw3b2 d.32.1.3 (B:133-288) 2,3-Dihydroxybiphenyl dioxygenase
          (DHBD, BPHC enzyme) {Pseudomonas sp. [TaxId: 306]}
          Length = 156

 Score = 23.2 bits (49), Expect = 7.6
 Identities = 6/26 (23%), Positives = 11/26 (42%)

Query: 1  MGLGYVEFRTLHLSNSHAYYTIVWEL 26
           G+G+        + + A+YT V   
Sbjct: 9  QGIGHFVRCVPDTAKAMAFYTEVLGF 34


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.140    0.435 

Gapped
Lambda     K      H
   0.267   0.0558    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 400,794
Number of extensions: 15695
Number of successful extensions: 49
Number of sequences better than 10.0: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 12
Length of query: 107
Length of database: 2,407,596
Length adjustment: 67
Effective length of query: 40
Effective length of database: 1,487,686
Effective search space: 59507440
Effective search space used: 59507440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.3 bits)