Query psy16631
Match_columns 376
No_of_seqs 168 out of 1341
Neff 9.3
Searched_HMMs 46136
Date Fri Aug 16 17:49:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16631.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16631hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00452 actin; Provisional 100.0 2E-86 4.3E-91 628.5 32.9 367 9-376 5-375 (375)
2 PTZ00466 actin-like protein; P 100.0 4.6E-86 9.9E-91 626.6 34.6 370 5-376 8-380 (380)
3 KOG0676|consensus 100.0 6.3E-86 1.4E-90 604.6 26.2 367 4-376 2-372 (372)
4 PTZ00281 actin; Provisional 100.0 1.1E-84 2.4E-89 618.4 32.7 368 8-376 5-376 (376)
5 PTZ00004 actin-2; Provisional 100.0 9.2E-83 2E-87 606.1 32.7 368 8-376 5-378 (378)
6 KOG0679|consensus 100.0 4.5E-78 9.7E-83 536.9 28.1 369 4-375 6-425 (426)
7 PTZ00280 Actin-related protein 100.0 2.4E-77 5.1E-82 576.0 33.2 365 9-374 4-408 (414)
8 PF00022 Actin: Actin; InterP 100.0 2.3E-77 4.9E-82 575.4 29.4 363 8-376 3-393 (393)
9 smart00268 ACTIN Actin. ACTIN 100.0 6.5E-76 1.4E-80 561.0 32.8 365 10-376 2-373 (373)
10 KOG0677|consensus 100.0 1.2E-74 2.5E-79 490.0 22.4 365 9-374 4-386 (389)
11 cd00012 ACTIN Actin; An ubiqui 100.0 1.6E-73 3.5E-78 543.9 32.9 363 11-374 1-371 (371)
12 COG5277 Actin and related prot 100.0 1.1E-68 2.4E-73 508.9 30.8 369 8-376 4-444 (444)
13 KOG0680|consensus 100.0 7.5E-68 1.6E-72 460.7 25.2 360 7-376 1-399 (400)
14 KOG0681|consensus 100.0 2.9E-56 6.3E-61 411.8 24.0 362 8-375 22-639 (645)
15 KOG0678|consensus 100.0 9.8E-55 2.1E-59 379.3 16.1 362 10-373 5-407 (415)
16 KOG0797|consensus 100.0 4.3E-43 9.3E-48 322.3 16.7 308 68-376 178-615 (618)
17 PRK13930 rod shape-determining 100.0 1.5E-38 3.2E-43 299.4 19.8 309 7-349 7-327 (335)
18 PRK13927 rod shape-determining 100.0 2.4E-37 5.3E-42 290.8 18.6 305 10-349 6-323 (334)
19 TIGR00904 mreB cell shape dete 100.0 1.1E-35 2.5E-40 279.1 19.8 308 12-349 5-326 (333)
20 PRK13929 rod-share determining 100.0 5.2E-35 1.1E-39 274.0 20.8 302 11-347 6-323 (335)
21 PF06723 MreB_Mbl: MreB/Mbl pr 100.0 4.4E-33 9.5E-38 255.5 16.6 305 10-349 2-320 (326)
22 PRK13928 rod shape-determining 100.0 3.9E-31 8.4E-36 248.5 19.0 305 11-349 5-322 (336)
23 COG1077 MreB Actin-like ATPase 99.9 8.4E-27 1.8E-31 206.3 14.9 308 9-348 6-329 (342)
24 TIGR02529 EutJ ethanolamine ut 99.8 4.3E-20 9.3E-25 164.5 15.9 211 72-346 28-238 (239)
25 PRK15080 ethanolamine utilizat 99.8 4.1E-18 8.8E-23 154.5 18.7 244 7-348 22-267 (267)
26 TIGR01991 HscA Fe-S protein as 99.7 4.5E-17 9.8E-22 163.7 15.0 307 11-350 1-360 (599)
27 CHL00094 dnaK heat shock prote 99.7 9.1E-17 2E-21 162.4 16.7 306 10-350 3-376 (621)
28 PLN03184 chloroplast Hsp70; Pr 99.7 2.9E-16 6.4E-21 159.4 19.3 312 8-350 38-413 (673)
29 PTZ00400 DnaK-type molecular c 99.7 2.9E-16 6.2E-21 159.4 16.6 218 105-350 174-415 (663)
30 PRK01433 hscA chaperone protei 99.7 8.6E-16 1.9E-20 153.6 18.8 297 10-350 20-356 (595)
31 PRK00290 dnaK molecular chaper 99.7 1.9E-16 4E-21 160.6 13.9 306 10-350 3-374 (627)
32 PTZ00186 heat shock 70 kDa pre 99.7 4.3E-16 9.2E-21 157.2 15.3 311 8-350 26-401 (657)
33 TIGR02350 prok_dnaK chaperone 99.7 2.9E-16 6.2E-21 158.6 13.7 309 11-350 2-372 (595)
34 PRK13410 molecular chaperone D 99.7 7.2E-16 1.6E-20 156.1 16.2 213 106-350 136-376 (668)
35 PRK13411 molecular chaperone D 99.7 8.6E-16 1.9E-20 155.8 15.5 219 106-350 134-376 (653)
36 PRK05183 hscA chaperone protei 99.7 2.1E-15 4.6E-20 152.0 16.9 213 105-350 149-376 (616)
37 PTZ00009 heat shock 70 kDa pro 99.6 4.7E-15 1E-19 150.6 15.4 215 105-350 140-381 (653)
38 PRK11678 putative chaperone; P 99.6 5.7E-13 1.2E-17 129.0 21.6 89 105-195 149-260 (450)
39 PF00012 HSP70: Hsp70 protein; 99.5 4.2E-14 9E-19 143.7 11.4 215 106-350 136-376 (602)
40 TIGR01174 ftsA cell division p 99.5 5.3E-13 1.2E-17 127.4 17.5 174 117-319 156-339 (371)
41 COG0443 DnaK Molecular chapero 99.4 5.5E-12 1.2E-16 125.8 18.1 310 9-350 5-357 (579)
42 PRK09472 ftsA cell division pr 99.4 1E-12 2.2E-17 127.0 11.9 200 118-349 165-387 (420)
43 COG0849 ftsA Cell division ATP 99.2 2.4E-11 5.2E-16 115.1 9.1 201 118-350 164-380 (418)
44 TIGR03739 PRTRC_D PRTRC system 99.2 3.1E-10 6.6E-15 106.0 15.6 284 14-349 2-319 (320)
45 PRK13917 plasmid segregation p 99.2 1.3E-09 2.9E-14 102.4 18.8 289 10-350 3-336 (344)
46 TIGR01175 pilM type IV pilus a 99.2 4.9E-09 1.1E-13 99.3 21.2 155 117-319 141-307 (348)
47 COG4820 EutJ Ethanolamine util 99.1 3.4E-11 7.3E-16 100.0 2.9 202 74-343 62-267 (277)
48 PF11104 PilM_2: Type IV pilus 98.9 7.6E-08 1.7E-12 90.8 16.6 193 82-332 86-306 (340)
49 KOG0104|consensus 98.8 7.7E-08 1.7E-12 94.5 14.5 192 8-201 21-276 (902)
50 KOG0101|consensus 98.8 2.5E-07 5.5E-12 90.8 17.5 218 106-351 144-384 (620)
51 COG4972 PilM Tfp pilus assembl 98.8 4.6E-07 1E-11 81.5 17.7 118 155-319 195-312 (354)
52 KOG0100|consensus 98.7 5.1E-07 1.1E-11 83.0 15.7 213 106-349 173-410 (663)
53 PF06406 StbA: StbA protein; 98.5 7.3E-07 1.6E-11 83.2 10.8 111 89-201 81-213 (318)
54 PRK10719 eutA reactivating fac 98.5 7.4E-06 1.6E-10 78.1 16.0 118 71-193 53-184 (475)
55 KOG0103|consensus 98.4 9.6E-06 2.1E-10 79.6 16.6 223 104-362 136-395 (727)
56 TIGR00241 CoA_E_activ CoA-subs 98.3 1.9E-05 4.2E-10 71.0 15.2 155 154-347 92-248 (248)
57 TIGR03286 methan_mark_15 putat 98.2 2.5E-05 5.5E-10 73.5 12.2 48 294-349 355-402 (404)
58 KOG0102|consensus 98.1 0.00012 2.6E-09 70.1 16.2 211 106-348 161-399 (640)
59 TIGR03192 benz_CoA_bzdQ benzoy 98.1 5.9E-05 1.3E-09 68.3 12.4 48 293-348 238-286 (293)
60 TIGR02261 benz_CoA_red_D benzo 97.7 0.00053 1.2E-08 61.3 11.0 50 296-348 213-262 (262)
61 COG1924 Activator of 2-hydroxy 97.6 0.0018 3.8E-08 60.0 12.8 44 298-349 346-389 (396)
62 PF06277 EutA: Ethanolamine ut 97.3 0.0027 5.8E-08 61.0 11.3 129 72-205 51-204 (473)
63 TIGR02259 benz_CoA_red_A benzo 96.3 0.011 2.5E-07 55.5 6.6 52 294-348 381-432 (432)
64 PF08841 DDR: Diol dehydratase 96.0 0.024 5.2E-07 50.5 6.9 204 118-344 94-325 (332)
65 PF01869 BcrAD_BadFG: BadF/Bad 95.5 0.053 1.2E-06 49.3 7.8 48 298-348 224-271 (271)
66 COG4819 EutA Ethanolamine util 95.4 0.14 3.1E-06 46.7 9.7 154 8-190 4-180 (473)
67 PRK13317 pantothenate kinase; 95.1 0.3 6.4E-06 44.6 11.1 71 274-349 201-273 (277)
68 COG0248 GppA Exopolyphosphatas 95.0 0.082 1.8E-06 52.0 7.7 75 117-193 86-167 (492)
69 PRK11031 guanosine pentaphosph 95.0 0.14 3E-06 50.9 9.5 79 113-193 85-170 (496)
70 TIGR03706 exo_poly_only exopol 94.9 0.068 1.5E-06 49.5 6.6 79 113-194 79-164 (300)
71 TIGR03123 one_C_unchar_1 proba 94.8 0.27 5.8E-06 45.6 10.1 30 149-178 124-153 (318)
72 TIGR00744 ROK_glcA_fam ROK fam 94.8 3.3 7.1E-05 38.5 17.6 52 124-177 89-147 (318)
73 PRK09557 fructokinase; Reviewe 94.7 2.1 4.6E-05 39.5 16.1 53 124-178 88-147 (301)
74 COG1548 Predicted transcriptio 94.7 0.17 3.7E-06 44.6 7.8 23 152-174 129-151 (330)
75 TIGR00555 panK_eukar pantothen 94.1 4.6 0.0001 36.8 16.8 68 274-346 209-278 (279)
76 PRK10854 exopolyphosphatase; P 93.4 0.29 6.4E-06 48.9 8.0 78 113-192 90-174 (513)
77 PF14450 FtsA: Cell division p 93.2 0.38 8.2E-06 37.9 6.8 59 156-225 2-71 (120)
78 PRK03011 butyrate kinase; Prov 92.6 6.9 0.00015 37.2 15.5 47 296-346 297-343 (358)
79 PF01968 Hydantoinase_A: Hydan 91.6 0.18 4E-06 46.4 3.5 33 146-178 69-102 (290)
80 COG2441 Predicted butyrate kin 91.3 0.3 6.6E-06 43.6 4.3 160 153-350 163-332 (374)
81 PF02541 Ppx-GppA: Ppx/GppA ph 90.6 0.53 1.1E-05 43.2 5.6 80 113-194 65-151 (285)
82 COG1521 Pantothenate kinase ty 90.4 3.5 7.6E-05 36.9 10.2 20 11-30 2-21 (251)
83 PF07318 DUF1464: Protein of u 88.3 7 0.00015 36.5 10.9 49 297-349 263-314 (343)
84 PRK13324 pantothenate kinase; 88.0 7.2 0.00016 35.2 10.7 19 11-29 2-20 (258)
85 TIGR02707 butyr_kinase butyrat 87.5 20 0.00044 33.9 13.8 25 154-179 175-199 (351)
86 TIGR00671 baf pantothenate kin 87.0 7.8 0.00017 34.6 10.3 18 12-29 2-19 (243)
87 PF03309 Pan_kinase: Type III 84.2 2.2 4.8E-05 37.0 5.3 18 12-29 2-19 (206)
88 PRK00976 hypothetical protein; 80.7 15 0.00033 34.2 9.5 33 144-177 140-172 (326)
89 PRK13321 pantothenate kinase; 80.7 20 0.00044 32.2 10.4 18 12-29 3-20 (256)
90 PRK13318 pantothenate kinase; 80.2 25 0.00054 31.6 10.8 18 11-28 2-19 (258)
91 PRK13326 pantothenate kinase; 76.9 40 0.00087 30.5 11.0 19 11-29 8-26 (262)
92 PRK13320 pantothenate kinase; 70.4 80 0.0017 28.2 11.2 19 11-29 4-22 (244)
93 PRK13331 pantothenate kinase; 64.6 19 0.00041 32.3 6.0 22 8-29 6-27 (251)
94 KOG2708|consensus 64.1 47 0.001 29.2 7.9 51 150-201 121-171 (336)
95 PF08735 DUF1786: Putative pyr 62.5 26 0.00056 31.4 6.3 67 130-198 138-213 (254)
96 PRK05082 N-acetylmannosamine k 61.4 14 0.00031 33.8 4.8 52 124-177 88-145 (291)
97 COG0145 HyuA N-methylhydantoin 58.5 9.8 0.00021 39.3 3.4 31 147-177 270-302 (674)
98 PRK13310 N-acetyl-D-glucosamin 58.1 18 0.00039 33.3 4.9 53 124-178 88-147 (303)
99 PRK09698 D-allose kinase; Prov 55.0 26 0.00056 32.2 5.4 52 124-177 96-153 (302)
100 PF03702 UPF0075: Uncharacteri 51.1 8.1 0.00018 36.7 1.4 24 296-319 286-309 (364)
101 KOG1386|consensus 49.9 1.4E+02 0.003 29.4 9.4 87 84-172 65-181 (501)
102 smart00842 FtsA Cell division 49.1 34 0.00073 29.0 4.8 22 74-95 36-57 (187)
103 PF02782 FGGY_C: FGGY family o 48.2 32 0.00069 29.2 4.6 47 295-350 150-196 (198)
104 KOG1385|consensus 47.8 94 0.002 30.0 7.7 19 152-170 212-230 (453)
105 cd08627 PI-PLCc_gamma1 Catalyt 46.8 41 0.00088 29.6 4.9 44 84-134 74-117 (229)
106 PRK13322 pantothenate kinase; 45.8 2.2E+02 0.0048 25.4 10.6 18 11-28 2-19 (246)
107 cd08626 PI-PLCc_beta4 Catalyti 44.8 43 0.00093 30.1 4.8 44 84-134 76-119 (257)
108 cd08630 PI-PLCc_delta3 Catalyt 44.6 44 0.00095 30.1 4.9 44 84-134 74-117 (258)
109 cd08596 PI-PLCc_epsilon Cataly 43.6 46 0.00099 29.9 4.8 44 84-134 74-117 (254)
110 cd08598 PI-PLC1c_yeast Catalyt 43.2 47 0.001 29.4 4.8 44 84-134 74-117 (231)
111 cd08594 PI-PLCc_eta Catalytic 42.9 49 0.0011 29.1 4.8 44 84-134 74-117 (227)
112 TIGR03367 queuosine_QueD queuo 42.8 34 0.00073 25.4 3.4 50 76-133 42-91 (92)
113 cd08631 PI-PLCc_delta4 Catalyt 42.7 47 0.001 29.9 4.8 44 84-134 74-117 (258)
114 cd08558 PI-PLCc_eukaryota Cata 42.5 49 0.0011 29.1 4.8 44 84-134 74-117 (226)
115 cd08592 PI-PLCc_gamma Catalyti 42.1 50 0.0011 29.1 4.8 44 84-134 74-117 (229)
116 cd08629 PI-PLCc_delta1 Catalyt 41.9 50 0.0011 29.7 4.8 44 84-134 74-117 (258)
117 cd08632 PI-PLCc_eta1 Catalytic 41.6 53 0.0011 29.4 4.9 44 84-134 74-117 (253)
118 cd08595 PI-PLCc_zeta Catalytic 41.6 51 0.0011 29.6 4.8 44 84-134 74-117 (257)
119 cd08591 PI-PLCc_beta Catalytic 41.5 51 0.0011 29.6 4.8 44 84-134 76-119 (257)
120 cd08593 PI-PLCc_delta Catalyti 41.5 50 0.0011 29.7 4.8 44 84-134 74-117 (257)
121 cd08633 PI-PLCc_eta2 Catalytic 39.8 58 0.0012 29.2 4.8 44 84-134 74-117 (254)
122 cd08597 PI-PLCc_PRIP_metazoa C 37.7 61 0.0013 29.2 4.7 44 84-134 74-117 (260)
123 TIGR00103 DNA_YbaB_EbfC DNA-bi 37.0 57 0.0012 24.7 3.8 46 263-310 57-102 (102)
124 cd08628 PI-PLCc_gamma2 Catalyt 36.1 71 0.0015 28.7 4.8 44 84-134 74-117 (254)
125 PF03727 Hexokinase_2: Hexokin 34.0 52 0.0011 29.3 3.8 42 306-350 198-240 (243)
126 PRK09585 anmK anhydro-N-acetyl 33.9 27 0.00059 33.2 2.0 22 297-318 289-310 (365)
127 smart00732 YqgFc Likely ribonu 33.1 1.1E+02 0.0023 22.4 4.9 24 155-178 3-27 (99)
128 cd08624 PI-PLCc_beta2 Catalyti 32.2 83 0.0018 28.4 4.6 44 84-134 76-120 (261)
129 cd08623 PI-PLCc_beta1 Catalyti 31.5 90 0.0019 28.1 4.7 44 84-134 76-120 (258)
130 smart00732 YqgFc Likely ribonu 31.1 52 0.0011 24.2 2.8 18 11-28 3-20 (99)
131 cd08599 PI-PLCc_plant Catalyti 29.1 1.2E+02 0.0025 26.9 5.0 43 84-133 74-116 (228)
132 cd08625 PI-PLCc_beta3 Catalyti 28.9 96 0.0021 28.0 4.5 44 84-134 76-120 (258)
133 TIGR01319 glmL_fam conserved h 28.1 35 0.00076 33.4 1.7 60 117-176 192-272 (463)
134 PF13941 MutL: MutL protein 27.3 49 0.0011 32.5 2.6 75 105-179 178-274 (457)
135 PF09693 Phage_XkdX: Phage unc 27.0 34 0.00074 21.0 0.9 11 356-366 25-35 (40)
136 COG4012 Uncharacterized protei 26.7 2.5E+02 0.0053 25.5 6.4 45 153-199 227-274 (342)
137 TIGR03286 methan_mark_15 putat 26.6 1.2E+02 0.0026 29.3 4.9 49 155-203 146-194 (404)
138 PF02685 Glucokinase: Glucokin 25.6 79 0.0017 29.5 3.5 23 128-150 86-108 (316)
139 PF13941 MutL: MutL protein 25.2 50 0.0011 32.5 2.2 24 11-34 2-27 (457)
140 PRK15027 xylulokinase; Provisi 24.7 66 0.0014 31.9 3.0 48 295-350 387-434 (484)
141 COG0849 ftsA Cell division ATP 24.6 1.1E+02 0.0024 29.8 4.3 58 10-95 7-64 (418)
142 TIGR01312 XylB D-xylulose kina 23.9 1.4E+02 0.003 29.4 5.2 47 295-350 391-437 (481)
143 TIGR01669 phage_XkdX phage unc 23.9 39 0.00086 21.4 0.8 15 352-366 25-40 (45)
144 PLN02230 phosphoinositide phos 23.4 1.3E+02 0.0029 30.6 4.8 44 84-134 187-230 (598)
145 PLN02952 phosphoinositide phos 23.3 1.4E+02 0.003 30.6 4.9 44 84-134 196-239 (599)
146 TIGR03192 benz_CoA_bzdQ benzoy 22.9 1.2E+02 0.0027 27.8 4.1 47 155-203 34-83 (293)
147 PLN02222 phosphoinositide phos 22.8 1.4E+02 0.003 30.5 4.8 44 84-134 176-219 (581)
148 PRK13333 pantothenate kinase; 22.8 97 0.0021 26.9 3.3 28 144-174 77-104 (206)
149 PRK09472 ftsA cell division pr 22.2 1.8E+02 0.0038 28.3 5.4 23 73-95 44-66 (420)
150 TIGR00039 6PTHBS 6-pyruvoyl te 21.8 1.2E+02 0.0026 23.7 3.5 52 76-133 44-95 (124)
151 PF01968 Hydantoinase_A: Hydan 21.1 52 0.0011 30.2 1.4 27 8-34 76-102 (290)
152 PLN02228 Phosphoinositide phos 20.7 1.7E+02 0.0036 29.8 4.9 44 84-134 179-222 (567)
153 COG4962 CpaF Flp pilus assembl 20.6 4.8E+02 0.01 24.7 7.5 27 296-325 174-200 (355)
154 PLN02223 phosphoinositide phos 20.5 1.7E+02 0.0036 29.4 4.8 45 84-134 179-223 (537)
155 PRK00153 hypothetical protein; 20.3 1.4E+02 0.003 22.6 3.4 35 273-310 66-103 (104)
156 TIGR03281 methan_mark_12 putat 20.3 1.4E+02 0.0031 27.6 3.9 43 297-349 265-310 (326)
157 PF00370 FGGY_N: FGGY family o 20.1 74 0.0016 28.1 2.2 19 11-29 2-20 (245)
No 1
>PTZ00452 actin; Provisional
Probab=100.00 E-value=2e-86 Score=628.54 Aligned_cols=367 Identities=45% Similarity=0.858 Sum_probs=340.5
Q ss_pred CCcEEEeCCCcceEEEEcCCCCCCeeccccceecCccccccCCCCCCeeeCcchhhccCcceeeccccCCcccCHHHHHH
Q psy16631 9 NQPVVIDNGSGVIKAGFAGDQVPKCCFPNYIGRPKHIRVMAGALEGDIFVGPKAEEHRGLLSIHYPMEHGIITDWNDMER 88 (376)
Q Consensus 9 ~~~vViD~Gs~~~k~G~a~~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~d~~~~~~ 88 (376)
.++||||+||+++|+||||++.|+.++||+++++++.....+..+.++++|+++...+..+.+++|+++|.|.|||.++.
T Consensus 5 ~~~vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~l~~Pi~~G~I~dwd~~e~ 84 (375)
T PTZ00452 5 YPAVVIDNGSGYCKIGIAGDDAPTSCFPAIVGRSKQNDGIFSTFNKEYYVGEEAQAKRGVLAIKEPIQNGIINSWDDIEI 84 (375)
T ss_pred CCEEEEECCCCeEEEeeCCCCCcCEEecceeEEECCccccccccccceEEChhhhccccCcEEcccCcCCEEcCHHHHHH
Confidence 35899999999999999999999999999999987643222223457889999877777788999999999999999999
Q ss_pred HHHHhhcCccCCCCCCCCcEEEEeCCCCChHhHHHHHHHhhcccCCCceecchhhhhhhhhcCCceEEEEecCCCceEEE
Q psy16631 89 IWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNREKAAEIFFESFNVPALYVSMQAVLSLYATGRTTGVVLDSGDGVTHAV 168 (376)
Q Consensus 89 ~l~~~~~~~~l~~~~~~~~vvl~~~~~~~~~~r~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~~t~i~ 168 (376)
+|+|+|.+ .|+++|+++|++++|++++++..|+++++++||.|++|++++.+++++++|++|++||||||+|++.|+|+
T Consensus 85 iw~~~f~~-~l~v~p~~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~~tglVVDiG~~~t~v~ 163 (375)
T PTZ00452 85 IWHHAFYN-ELCMSPEDQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSGKTIGLVVDSGEGVTHCV 163 (375)
T ss_pred HHHHHHHh-hcCCCcccCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCCCceeeeecCCCCcceEE
Confidence 99999986 69999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCeeccccceeecccHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHhcccccCCcccc----ccCCCCceEEECC
Q psy16631 169 PIYEGFAMPHSIMRNDIAGRDVTRYLKLLLRKEGVNFRTTAEFEIVRTIKEKACYLSSNPVKE----ETTDSEKHTYVLP 244 (376)
Q Consensus 169 pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~----~~~~~~~~~~~lp 244 (376)
||+||+++.+++.++++||++++++|.++|..+++++....+.+.++++|+++||++.++.++ .......+.|+||
T Consensus 164 PV~dG~~l~~~~~r~~~gG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~y~LP 243 (375)
T PTZ00452 164 PVFEGHQIPQAITKINLAGRLCTDYLTQILQELGYSLTEPHQRIIVKNIKERLCYTALDPQDEKRIYKESNSQDSPYKLP 243 (375)
T ss_pred EEECCEEeccceEEeeccchHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccccCcHHHHHHHhhccCCcCceEECC
Confidence 999999999999999999999999999999998887766667789999999999999887654 1123345789999
Q ss_pred CCcEEEeccccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHHhhcCeEeccCcccccCHHHHHHHHHHhhCCC
Q psy16631 245 DGSSLDIGHARFRAPEVLFRPDLIGEESEGIHDVLYYAIQKSDLDLRKVLYQNIVLSGGSTLFKGFGDRLLAEIRKNAPK 324 (376)
Q Consensus 245 d~~~i~v~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~Gl~~rl~~eL~~~~~~ 324 (376)
||+.|.++.+|+.+||+||+|++++.+..||+++|.++|.+||+|+|+.|++||||+||+|++|||.+||++||..++|.
T Consensus 244 Dg~~i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~ 323 (375)
T PTZ00452 244 DGNILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVPS 323 (375)
T ss_pred CCCEEEeehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CceEEEeCCCCCccchhhhHHHhhccccccccceeHHHHhhcCchhhhhccC
Q psy16631 325 DLKIRISAPQERLYSTWIGGSILASLDTFKRMWVSKREFDEDGKRAIHRKTF 376 (376)
Q Consensus 325 ~~~i~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itk~ey~e~G~~~~~~k~~ 376 (376)
..+++|..++++.+++|+||||+|++++|+++||||+||+|+|+++++||||
T Consensus 324 ~~~v~v~~~~~r~~~aW~GgSilasl~~f~~~~vtk~eYeE~G~~i~~~k~~ 375 (375)
T PTZ00452 324 QLKIQVAAPPDRRFSAWIGGSIQCTLSTQQPQWIKRQEYDEQGPSIVHRKCF 375 (375)
T ss_pred CceeEEecCCCcceeEEECchhhcCccchhhhEeEHHHHhccCcceeeeecC
Confidence 8899999999999999999999999999999999999999999999999997
No 2
>PTZ00466 actin-like protein; Provisional
Probab=100.00 E-value=4.6e-86 Score=626.59 Aligned_cols=370 Identities=61% Similarity=1.066 Sum_probs=343.9
Q ss_pred cCCCCCcEEEeCCCcceEEEEcCCCCCCeeccccceecCccccccCCCCCCeeeCcchhhccCcceeeccccCCcccCHH
Q psy16631 5 DVIVNQPVVIDNGSGVIKAGFAGDQVPKCCFPNYIGRPKHIRVMAGALEGDIFVGPKAEEHRGLLSIHYPMEHGIITDWN 84 (376)
Q Consensus 5 ~~~~~~~vViD~Gs~~~k~G~a~~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~d~~ 84 (376)
+.++..+||||+||+++|+||||++.|+.++||++++++......+...+++++|+++...+....+.+|+++|.|.|||
T Consensus 8 ~~~~~~~iViD~GS~~~K~G~ag~~~P~~~~ps~vg~~k~~~~~~~~~~~~~~vG~~~~~~~~~~~l~~Pi~~G~v~dwd 87 (380)
T PTZ00466 8 QLYSNQPIIIDNGTGYIKAGFAGEDVPNLVFPSYVGRPKYKRVMAGAVEGNIFVGNKAEEYRGLLKVTYPINHGIIENWN 87 (380)
T ss_pred HhccCCeEEEECCCCcEEEeeCCCCCCCEeccceeeeecCccccccCCCCCeEECchhhhhCcCceeCccccCCeECCHH
Confidence 45777899999999999999999999999999999998765433344456789999987777777899999999999999
Q ss_pred HHHHHHHHhhcCccCCCCCCCCcEEEEeCCCCChHhHHHHHHHhhcccCCCceecchhhhhhhhhcCCceEEEEecCCCc
Q psy16631 85 DMERIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNREKAAEIFFESFNVPALYVSMQAVLSLYATGRTTGVVLDSGDGV 164 (376)
Q Consensus 85 ~~~~~l~~~~~~~~l~~~~~~~~vvl~~~~~~~~~~r~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~~ 164 (376)
.++.+|+|+| + .|+++++++|+++++++++++..|+++++++||.|++|++++.+++++++|++|++||+|||+|++.
T Consensus 88 ~~e~iw~~~f-~-~l~v~~~~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~~tglVVD~G~~~ 165 (380)
T PTZ00466 88 DMENIWIHVY-N-SMKINSEEHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCGKTNGTVLDCGDGV 165 (380)
T ss_pred HHHHHHHHHH-h-hcccCCccCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcCCceEEEEeCCCCc
Confidence 9999999999 3 6999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeeCCeeccccceeecccHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHhcccccCCccccc---cCCCCceEE
Q psy16631 165 THAVPIYEGFAMPHSIMRNDIAGRDVTRYLKLLLRKEGVNFRTTAEFEIVRTIKEKACYLSSNPVKEE---TTDSEKHTY 241 (376)
Q Consensus 165 t~i~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~---~~~~~~~~~ 241 (376)
|+|+||+||+++.+++.++++||++++++|+++|.++++.++...+.+.++++|+++||++.++..+. ........|
T Consensus 166 t~v~PV~~G~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~~~y 245 (380)
T PTZ00466 166 CHCVSIYEGYSITNTITRTDVAGRDITTYLGYLLRKNGHLFNTSAEMEVVKNMKENCCYVSFNMNKEKNSSEKALTTLPY 245 (380)
T ss_pred eEEEEEECCEEeecceeEecCchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhCeEecCChHHHHhhccccccceeE
Confidence 99999999999999999999999999999999999988777766778999999999999999876541 122334789
Q ss_pred ECCCCcEEEeccccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHHhhcCeEeccCcccccCHHHHHHHHHHhh
Q psy16631 242 VLPDGSSLDIGHARFRAPEVLFRPDLIGEESEGIHDVLYYAIQKSDLDLRKVLYQNIVLSGGSTLFKGFGDRLLAEIRKN 321 (376)
Q Consensus 242 ~lpd~~~i~v~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~Gl~~rl~~eL~~~ 321 (376)
+||||..|.++.||+.+||+||+|++++.+..+|+++|.++|.+||.|.|+.|++||||+||+|++|||.+||++||..+
T Consensus 246 ~LPdg~~i~l~~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l 325 (380)
T PTZ00466 246 ILPDGSQILIGSERYRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRKF 325 (380)
T ss_pred ECCCCcEEEEchHHhcCcccccCccccCCCCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEeCCCCCccchhhhHHHhhccccccccceeHHHHhhcCchhhhhccC
Q psy16631 322 APKDLKIRISAPQERLYSTWIGGSILASLDTFKRMWVSKREFDEDGKRAIHRKTF 376 (376)
Q Consensus 322 ~~~~~~i~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itk~ey~e~G~~~~~~k~~ 376 (376)
.|...+++|..++++++++|+||||+|++++|++.||||+||+|+|+++++||||
T Consensus 326 ~p~~~~v~v~~~~~r~~~aW~GgSilasl~~f~~~~itk~eYeE~G~~iv~rk~~ 380 (380)
T PTZ00466 326 APKDITIRISAPPERKFSTFIGGSILASLATFKKIWISKQEFDEYGSVILHRKTF 380 (380)
T ss_pred CCCCceEEEecCCCCceeEEECchhhcCccchhhhEeEHHHHhhhCcHhheeecC
Confidence 9988899999999999999999999999999999999999999999999999997
No 3
>KOG0676|consensus
Probab=100.00 E-value=6.3e-86 Score=604.56 Aligned_cols=367 Identities=59% Similarity=1.036 Sum_probs=346.0
Q ss_pred ccCCCCCcEEEeCCCcceEEEEcCCCCCCeeccccceecCccccccCCCCCCeeeCcchhhccCcceeeccccCCcccCH
Q psy16631 4 YDVIVNQPVVIDNGSGVIKAGFAGDQVPKCCFPNYIGRPKHIRVMAGALEGDIFVGPKAEEHRGLLSIHYPMEHGIITDW 83 (376)
Q Consensus 4 ~~~~~~~~vViD~Gs~~~k~G~a~~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~d~ 83 (376)
++..+..+||+|+|+.++|+||||++.|+.++||.++++++.....+...++.++|+++...+ .+.||+++|.|.||
T Consensus 2 ~~~~~~~~vViDnGsg~~KaGfag~~~P~~v~ps~vg~~~~~~~~~~~~~~~~~vg~~a~~~~---~l~~Pie~Giv~~w 78 (372)
T KOG0676|consen 2 YEADDIQAVVIDNGSGFVKAGFAGDDAPRAVFPSIVGRPRHQGVMAGMTQKDTYVGDEAESKR---TLKYPIERGIVTDW 78 (372)
T ss_pred CCcCCcceEEEECCCceeecccCCCCCCceecceeccccccccccccccccccccchhhhccc---cccCccccccccch
Confidence 455667899999999999999999999999999999998887777777888999999997777 67999999999999
Q ss_pred HHHHHHHHHhhcCccCCCCCCCCcEEEEeCCCCChHhHHHHHHHhhcccCCCceecchhhhhhhhhcCCceEEEEecCCC
Q psy16631 84 NDMERIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNREKAAEIFFESFNVPALYVSMQAVLSLYATGRTTGVVLDSGDG 163 (376)
Q Consensus 84 ~~~~~~l~~~~~~~~l~~~~~~~~vvl~~~~~~~~~~r~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~ 163 (376)
|+++.||.|+|++ .|.++|.++|++++|++++++..||++++++||.|++|++++..++++ |++|++||+|||+|++
T Consensus 79 d~me~iw~~if~~-~L~~~Pee~pvllte~pl~p~~nREk~tqi~FE~fnvpa~yva~qavl--ya~g~ttG~VvD~G~g 155 (372)
T KOG0676|consen 79 DDMEKIWHHLFYS-ELLVAPEEHPVLLTEPPLNPKANREKLTQIMFETFNVPALYVAIQAVL--YASGRTTGLVVDSGDG 155 (372)
T ss_pred HHHHHHHHHHHHH-hhccCcccCceEeecCCCCchHhHHHHHHHhhhhcCccHhHHHHHHHH--HHcCCeeEEEEEcCCC
Confidence 9999999999986 699999999999999999999999999999999999999999775555 9999999999999999
Q ss_pred ceEEEEeeCCeeccccceeecccHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHhcccccCCccccc----cCCCCce
Q psy16631 164 VTHAVPIYEGFAMPHSIMRNDIAGRDVTRYLKLLLRKEGVNFRTTAEFEIVRTIKEKACYLSSNPVKEE----TTDSEKH 239 (376)
Q Consensus 164 ~t~i~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~----~~~~~~~ 239 (376)
.|+++||+||+++++++.++++||++++++++..|.++++++....+.+.++++|++.||++.++.++. .......
T Consensus 156 vt~~vPI~eG~~lp~ai~~ldl~G~dlt~~l~~~L~~~g~s~~~~~~~eIv~diKeklCyvald~~~e~~~~~~~~~l~~ 235 (372)
T KOG0676|consen 156 VTHVVPIYEGYALPHAILRLDLAGRDLTDYLLKQLRKRGYSFTTSAEFEIVRDIKEKLCYVALDFEEEEETANTSSSLES 235 (372)
T ss_pred ceeeeecccccccchhhheecccchhhHHHHHHHHHhcccccccccHHHHHHHhHhhhcccccccchhhhcccccccccc
Confidence 999999999999999999999999999999999999998888888899999999999999999887762 2334556
Q ss_pred EEECCCCcEEEeccccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHHhhcCeEeccCcccccCHHHHHHHHHH
Q psy16631 240 TYVLPDGSSLDIGHARFRAPEVLFRPDLIGEESEGIHDVLYYAIQKSDLDLRKVLYQNIVLSGGSTLFKGFGDRLLAEIR 319 (376)
Q Consensus 240 ~~~lpd~~~i~v~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~Gl~~rl~~eL~ 319 (376)
+|++|||+.+.++++|+.+||++|+|++.+.+..+|++++.++|.+||+|+|+.|++||||+||++++|||.+||++||.
T Consensus 236 ~y~lPDg~~i~i~~erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~kcd~dlrk~L~~nivLsGGtT~~pGl~~Rl~kEl~ 315 (372)
T KOG0676|consen 236 SYELPDGQKITIGNERFRCPEVLFQPSLLGMESPGIHELTVNSIMKCDIDLRKDLYENIVLSGGTTMFPGLADRLQKELQ 315 (372)
T ss_pred cccCCCCCEEecCCcccccchhcCChhhcCCCCCchhHHHHHHHHhCChhHhHHHHhheEEeCCcccchhHHHHHHHHHh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCceEEEeCCCCCccchhhhHHHhhccccccccceeHHHHhhcCchhhhhccC
Q psy16631 320 KNAPKDLKIRISAPQERLYSTWIGGSILASLDTFKRMWVSKREFDEDGKRAIHRKTF 376 (376)
Q Consensus 320 ~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itk~ey~e~G~~~~~~k~~ 376 (376)
.+.|...+++|.++|++.+++|+||||+|++++|+++||||+||+|+|+.+++||||
T Consensus 316 ~l~P~~~~ikv~~pp~r~~s~WlGgSIlaslstfq~~witk~eY~e~g~~~~~rk~f 372 (372)
T KOG0676|consen 316 ALAPSTIKIKVIAPPERKYSAWLGGSILASLSTFQQMWITKEEYEEHGPSIIHRKCF 372 (372)
T ss_pred hcCCCCcceEEecCcccccceecCceeEeecchHhhccccHHHHhhhCCceeeeccC
Confidence 999999999999999999999999999999999999999999999999999999998
No 4
>PTZ00281 actin; Provisional
Probab=100.00 E-value=1.1e-84 Score=618.42 Aligned_cols=368 Identities=56% Similarity=1.009 Sum_probs=341.3
Q ss_pred CCCcEEEeCCCcceEEEEcCCCCCCeeccccceecCccccccCCCCCCeeeCcchhhccCcceeeccccCCcccCHHHHH
Q psy16631 8 VNQPVVIDNGSGVIKAGFAGDQVPKCCFPNYIGRPKHIRVMAGALEGDIFVGPKAEEHRGLLSIHYPMEHGIITDWNDME 87 (376)
Q Consensus 8 ~~~~vViD~Gs~~~k~G~a~~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~d~~~~~ 87 (376)
+.++||||+||+++|+||||++.|++++||.++++++.....+.++.+.++|+++...+..+.+++|+++|.|.|||.++
T Consensus 5 ~~~~vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~Pi~~G~i~dwd~~e 84 (376)
T PTZ00281 5 DVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDME 84 (376)
T ss_pred cCCeEEEECCCCeEEEeeCCCCCCCeeccccceeecCcccccCcccCCeEECchhhccccCcEEeccCcCCEEcCHHHHH
Confidence 34689999999999999999999999999999987664333333456788999987777778899999999999999999
Q ss_pred HHHHHhhcCccCCCCCCCCcEEEEeCCCCChHhHHHHHHHhhcccCCCceecchhhhhhhhhcCCceEEEEecCCCceEE
Q psy16631 88 RIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNREKAAEIFFESFNVPALYVSMQAVLSLYATGRTTGVVLDSGDGVTHA 167 (376)
Q Consensus 88 ~~l~~~~~~~~l~~~~~~~~vvl~~~~~~~~~~r~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~~t~i 167 (376)
.+|+|+|.+ .|.++++++|+++++++++++..|+++++++||.|++|++++.+++++++|+.|++||||||+|++.|+|
T Consensus 85 ~l~~~~f~~-~l~v~p~~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~~tglVVDiG~~~t~v 163 (376)
T PTZ00281 85 KIWHHTFYN-ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHT 163 (376)
T ss_pred HHHHHHHHh-hccCCCccCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcCCceEEEEECCCceEEE
Confidence 999999986 6999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCeeccccceeecccHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHhcccccCCcccc----ccCCCCceEEEC
Q psy16631 168 VPIYEGFAMPHSIMRNDIAGRDVTRYLKLLLRKEGVNFRTTAEFEIVRTIKEKACYLSSNPVKE----ETTDSEKHTYVL 243 (376)
Q Consensus 168 ~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~----~~~~~~~~~~~l 243 (376)
+||+||+++.++++++++||++++++|+++|..+++++....+.+.++++|+++||++.++..+ .......+.|.|
T Consensus 164 ~PV~dG~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~y~L 243 (376)
T PTZ00281 164 VPIYEGYALPHAILRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYEL 243 (376)
T ss_pred EEEEecccchhheeeccCcHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcEEecCCchHHHHhhhcCcccceeEEC
Confidence 9999999999999999999999999999999998887766677889999999999999876544 112334578999
Q ss_pred CCCcEEEeccccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHHhhcCeEeccCcccccCHHHHHHHHHHhhCC
Q psy16631 244 PDGSSLDIGHARFRAPEVLFRPDLIGEESEGIHDVLYYAIQKSDLDLRKVLYQNIVLSGGSTLFKGFGDRLLAEIRKNAP 323 (376)
Q Consensus 244 pd~~~i~v~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~Gl~~rl~~eL~~~~~ 323 (376)
|||+.|.++.||+.+||+||+|++++.+..+|+++|.++|.+||+|+|+.|++||||+||+|++|||.+||++||+.+.|
T Consensus 244 Pdg~~i~i~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~El~~~~p 323 (376)
T PTZ00281 244 PDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAP 323 (376)
T ss_pred CCCCEEEeeHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEeCCCCCccchhhhHHHhhccccccccceeHHHHhhcCchhhhhccC
Q psy16631 324 KDLKIRISAPQERLYSTWIGGSILASLDTFKRMWVSKREFDEDGKRAIHRKTF 376 (376)
Q Consensus 324 ~~~~i~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itk~ey~e~G~~~~~~k~~ 376 (376)
...+++|..+++|.+++|+|||++|++++|++.||||+||+|+|+++++||||
T Consensus 324 ~~~~v~v~~~~~r~~~aW~Ggsilasl~~f~~~~vtk~eY~E~G~~~~~~k~~ 376 (376)
T PTZ00281 324 STMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF 376 (376)
T ss_pred CCcceEEecCCCCceeEEECcccccCcccHhhceeeHHHHhhhCchheeeecC
Confidence 88899999999999999999999999999999999999999999999999997
No 5
>PTZ00004 actin-2; Provisional
Probab=100.00 E-value=9.2e-83 Score=606.14 Aligned_cols=368 Identities=56% Similarity=1.030 Sum_probs=339.9
Q ss_pred CCCcEEEeCCCcceEEEEcCCCCCCeeccccceecCccccccCCCCCCeeeCcchhhccCcceeeccccCCcccCHHHHH
Q psy16631 8 VNQPVVIDNGSGVIKAGFAGDQVPKCCFPNYIGRPKHIRVMAGALEGDIFVGPKAEEHRGLLSIHYPMEHGIITDWNDME 87 (376)
Q Consensus 8 ~~~~vViD~Gs~~~k~G~a~~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~d~~~~~ 87 (376)
+.++||||+||+++|+||||++.|++++||+++++++.....+...+..++|+++...+....+++|+++|.|.|||.++
T Consensus 5 ~~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~Pi~~G~i~d~d~~e 84 (378)
T PTZ00004 5 ETNAAVVDNGSGMVKAGFAGDDAPRCVFPSIVGRPKNPGIMVGMEEKDCYVGDEAQDKRGILTLKYPIEHGIVTNWDDME 84 (378)
T ss_pred CCCeEEEECCCCeEEEeeCCCCCCCEEccceeEEecccccccCcCCCceEECchhhcccccceEcccCcCCEEcCHHHHH
Confidence 45689999999999999999999999999999988764333333456788999886666667899999999999999999
Q ss_pred HHHHHhhcCccCCCCCCCCcEEEEeCCCCChHhHHHHHHHhhcccCCCceecchhhhhhhhhcCCceEEEEecCCCceEE
Q psy16631 88 RIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNREKAAEIFFESFNVPALYVSMQAVLSLYATGRTTGVVLDSGDGVTHA 167 (376)
Q Consensus 88 ~~l~~~~~~~~l~~~~~~~~vvl~~~~~~~~~~r~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~~t~i 167 (376)
.+|+|+|.+ +|.+++.++|+++++++++++..|+++++++||.|+++++++.+++++++|++|++||+|||+|++.|+|
T Consensus 85 ~i~~~~~~~-~l~v~~~~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~~tglVVDiG~~~t~v 163 (378)
T PTZ00004 85 KIWHHTFYN-ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHT 163 (378)
T ss_pred HHHHHHHHh-hcccCCccCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcCCceEEEEECCCCcEEE
Confidence 999999875 6999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCeeccccceeecccHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHhcccccCCcccccc-----CCCCceEEE
Q psy16631 168 VPIYEGFAMPHSIMRNDIAGRDVTRYLKLLLRKEGVNFRTTAEFEIVRTIKEKACYLSSNPVKEET-----TDSEKHTYV 242 (376)
Q Consensus 168 ~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~-----~~~~~~~~~ 242 (376)
+||+||+++.+++.++++||++++++|+++|..++..+....+.+.++++|+++||++.++.++.. .....+.|+
T Consensus 164 ~pV~dG~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~~y~ 243 (378)
T PTZ00004 164 VPIYEGYSLPHAIHRLDVAGRDLTEYMMKILHERGTTFTTTAEKEIVRDIKEKLCYIALDFDEEMGNSAGSSDKYEESYE 243 (378)
T ss_pred EEEECCEEeecceeeecccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHhhcceeecCCHHHHHhhhhcCccccceEEE
Confidence 999999999999999999999999999999999888776666788999999999999988765511 112367899
Q ss_pred CCCCcEEEeccccccccccccCCCCCCCC-CCCHHHHHHHHHHhCCHHHHHHhhcCeEeccCcccccCHHHHHHHHHHhh
Q psy16631 243 LPDGSSLDIGHARFRAPEVLFRPDLIGEE-SEGIHDVLYYAIQKSDLDLRKVLYQNIVLSGGSTLFKGFGDRLLAEIRKN 321 (376)
Q Consensus 243 lpd~~~i~v~~~r~~~~E~lF~p~~~~~~-~~~l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~Gl~~rl~~eL~~~ 321 (376)
+|||+.+.++.+|+.+||+||+|++++.+ ..+|+++|.++|.+||+|+|+.|++||||+||+|++|||.+||++||+++
T Consensus 244 lPdg~~i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~~ 323 (378)
T PTZ00004 244 LPDGTIITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKELTTL 323 (378)
T ss_pred CCCCCEEEEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHHHHHHHHHHHh
Confidence 99999999999999999999999998888 89999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEeCCCCCccchhhhHHHhhccccccccceeHHHHhhcCchhhhhccC
Q psy16631 322 APKDLKIRISAPQERLYSTWIGGSILASLDTFKRMWVSKREFDEDGKRAIHRKTF 376 (376)
Q Consensus 322 ~~~~~~i~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itk~ey~e~G~~~~~~k~~ 376 (376)
.|...+++|..+++|.+++|+|||++|++++|++.||||+||+|+|+++++||||
T Consensus 324 ~p~~~~~~v~~~~~~~~~aW~Ggsilas~~~f~~~~vtk~eYeE~G~~~~~rk~~ 378 (378)
T PTZ00004 324 APSTMKIKVVAPPERKYSVWIGGSILSSLPTFQQMWVTKEEYDESGPSIVHRKCF 378 (378)
T ss_pred CCCCccEEEecCCCCceeEEECcccccCccchhhhEeEHHHHhhhCcceEEeecC
Confidence 9988899999999999999999999999999999999999999999999999997
No 6
>KOG0679|consensus
Probab=100.00 E-value=4.5e-78 Score=536.86 Aligned_cols=369 Identities=35% Similarity=0.680 Sum_probs=327.9
Q ss_pred ccCCCCCcEEEeCCCcceEEEEcCCCCCCeeccccceecCccccccCCCCCCeeeCcch-hhccCcceeeccccCCcccC
Q psy16631 4 YDVIVNQPVVIDNGSGVIKAGFAGDQVPKCCFPNYIGRPKHIRVMAGALEGDIFVGPKA-EEHRGLLSIHYPMEHGIITD 82 (376)
Q Consensus 4 ~~~~~~~~vViD~Gs~~~k~G~a~~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~p~~~g~i~d 82 (376)
|..-+-++||||+||+++|+||||++.|++++||+++...+... .....+.+++++++ ...++...+..|+++|.+.|
T Consensus 6 yggdEv~alViDpGS~~traGyaged~Pk~ilPS~~G~~tk~~~-d~~~~~~~y~~~~ai~~pr~gmEv~~~i~nGlv~d 84 (426)
T KOG0679|consen 6 YGGDEVSALVIDPGSHTTRAGYAGEDSPKAILPSVYGKVTKTDG-DAEDKKGYYVDENAIHVPRPGMEVKTPIKNGLVED 84 (426)
T ss_pred ccccccceEEEeCCCceEeccccCCCCccccccceeeeeecccC-ccccccceEeechhccCCCCCCeeccchhcCCccc
Confidence 34446678999999999999999999999999999996422111 11233557888877 55677889999999999999
Q ss_pred HHHHHHHHHHhhcCccCCCCCCCCcEEEEeCCCCChHhHHHHHHHhhcccCCCceecchhhhhhhhhcCCceEEEEecCC
Q psy16631 83 WNDMERIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNREKAAEIFFESFNVPALYVSMQAVLSLYATGRTTGVVLDSGD 162 (376)
Q Consensus 83 ~~~~~~~l~~~~~~~~l~~~~~~~~vvl~~~~~~~~~~r~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~ 162 (376)
||.++.+|+|.|.+ +|+++|.++|++++||+++++..|++++|++||.+++|+++++.+++|++|+.|+.||||||||+
T Consensus 85 WD~~~~~w~~~~~~-~Lk~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~GrstalVvDiGa 163 (426)
T KOG0679|consen 85 WDLFEMQWRYAYKN-QLKVNPEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFANGRSTALVVDIGA 163 (426)
T ss_pred HHHHHHHHHHHHhh-hhhcCccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhcCCCceEEEEecC
Confidence 99999999999986 79999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEeeCCeeccccceeecccHHHHHHHHHHHHHhcCCCCcc---------------------------------ch
Q psy16631 163 GVTHAVPIYEGFAMPHSIMRNDIAGRDVTRYLKLLLRKEGVNFRT---------------------------------TA 209 (376)
Q Consensus 163 ~~t~i~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~---------------------------------~~ 209 (376)
+.|+|+||+||+++.+++.+.++||+.|+..++++|..+++++.. ..
T Consensus 164 ~~~svsPV~DG~Vlqk~vvks~laGdFl~~~~~q~l~~~~iei~P~y~ia~k~~v~~g~~an~~~~~~~~d~tes~~~y~ 243 (426)
T KOG0679|consen 164 THTSVSPVHDGYVLQKGVVKSPLAGDFLNDQCRQLLEPKNIEIIPMYNIASKEPVREGYPANAVLRVSIPDLTESYHNYM 243 (426)
T ss_pred CCceeeeeecceEeeeeeEecccchHHHHHHHHHHHhhcCcccCcHHHhhhcccccccCcchhhhcCChhHHHHHHHHHH
Confidence 999999999999999999999999999999999999987654321 01
Q ss_pred HHHHHHHHHHhcccccCCcccc-ccCCCCceEEECCCCcEEEeccccccccccccCCCCCC------------CCCCCHH
Q psy16631 210 EFEIVRTIKEKACYLSSNPVKE-ETTDSEKHTYVLPDGSSLDIGHARFRAPEVLFRPDLIG------------EESEGIH 276 (376)
Q Consensus 210 ~~~~~~~iK~~~~~~~~~~~~~-~~~~~~~~~~~lpd~~~i~v~~~r~~~~E~lF~p~~~~------------~~~~~l~ 276 (376)
...+++++|++.+.++..+.++ ...+-..+.|++|||....++.+||++||.||+|+... ....|++
T Consensus 244 ~~~v~~e~ke~v~qv~dtp~de~~~~~i~~~~~efP~g~~~~~G~er~ripe~lF~Ps~v~~~s~~~~~~~~~n~~lG~~ 323 (426)
T KOG0679|consen 244 EQRVYQEFKESVLQVSDTPFDEEVAAQIPTKHFEFPDGYTLDFGAERFRIPEYLFKPSLVKSSSKEAGATSHINTMLGLP 323 (426)
T ss_pred HHHHHHHHHHHHHhccCCCCcccccccCCCccccCCCCcccccCcceeecchhhcCcchhccccccccCCCCCccccCch
Confidence 2356788899999888766554 33446788999999999999999999999999998642 2346999
Q ss_pred HHHHHHHHhCCHHHHHHhhcCeEeccCcccccCHHHHHHHHHHhhCCCCceEEEeCCC---CCccchhhhHHHhhccccc
Q psy16631 277 DVLYYAIQKSDLDLRKVLYQNIVLSGGSTLFKGFGDRLLAEIRKNAPKDLKIRISAPQ---ERLYSTWIGGSILASLDTF 353 (376)
Q Consensus 277 ~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~Gl~~rl~~eL~~~~~~~~~i~v~~~~---~~~~~~w~Gasi~a~l~~~ 353 (376)
+++..+|..||.|+|..|+.|||+|||+|+|+||.+||.+||....|.. ++++++.. ++.+++|+||||+|+|++|
T Consensus 324 ~lv~sSi~~cDvdiR~~L~~nVivtGGtSliqG~s~RL~~ELs~~~P~s-rlki~as~~t~eR~~~~WlGGSILASLgtF 402 (426)
T KOG0679|consen 324 HLVYSSINMCDVDIRSSLLGNVIVTGGTSLIQGFSERLNKELSKRAPSS-RLKIIASGHTVERRFQSWLGGSILASLGTF 402 (426)
T ss_pred HHHHhhhccChHHHHHHhhccEEEecCcchhhhHHHHHHHHHHHhCCcc-eEEEEecCceeeehhhhhhhhHHHhccccH
Confidence 9999999999999999999999999999999999999999999999977 99998764 8999999999999999999
Q ss_pred cccceeHHHHhhcCc-hhhhhcc
Q psy16631 354 KRMWVSKREFDEDGK-RAIHRKT 375 (376)
Q Consensus 354 ~~~~itk~ey~e~G~-~~~~~k~ 375 (376)
+++||+|+||+|.|. ..+.|||
T Consensus 403 qq~WiSKqEYEE~G~d~~ve~rc 425 (426)
T KOG0679|consen 403 QQLWISKQEYEEVGKDQLVERRC 425 (426)
T ss_pred HHHhhhHHHHHHhhhHHHHhhcC
Confidence 999999999999999 8999999
No 7
>PTZ00280 Actin-related protein 3; Provisional
Probab=100.00 E-value=2.4e-77 Score=575.98 Aligned_cols=365 Identities=39% Similarity=0.696 Sum_probs=326.7
Q ss_pred CCcEEEeCCCcceEEEEcCCCCCCeeccccceecCccccc---cCCCCCCeeeCcchhhccCcceeeccccCCcccCHHH
Q psy16631 9 NQPVVIDNGSGVIKAGFAGDQVPKCCFPNYIGRPKHIRVM---AGALEGDIFVGPKAEEHRGLLSIHYPMEHGIITDWND 85 (376)
Q Consensus 9 ~~~vViD~Gs~~~k~G~a~~~~P~~~~ps~v~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~d~~~ 85 (376)
.++||||+||+++|+||||++.|++++||++++++..... .+....++++|+++......+.+++|+++|.|.|||.
T Consensus 4 ~~~iViD~GS~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~vG~ea~~~~~~~~l~~Pi~~G~I~dwd~ 83 (414)
T PTZ00280 4 LPVVVIDNGTGYTKMGYAGNTEPTYIIPTLIADNSKQSRRRSKKGFEDLDFYIGDEALAASKSYTLTYPMKHGIVEDWDL 83 (414)
T ss_pred CCeEEEECCCCceEeeeCCCCCCCEEecceeEEeccccccccccccccCCEEEcchhhhCcCCcEEecCccCCEeCCHHH
Confidence 4589999999999999999999999999999987653211 1112346789999877777788999999999999999
Q ss_pred HHHHHHHhhcCccCCCCCCCCcEEEEeCCCCChHhHHHHHHHhhcccCCCceecchhhhhhhhhc----------CCceE
Q psy16631 86 MERIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNREKAAEIFFESFNVPALYVSMQAVLSLYAT----------GRTTG 155 (376)
Q Consensus 86 ~~~~l~~~~~~~~l~~~~~~~~vvl~~~~~~~~~~r~~~~~~lfe~~~~~~v~~~~~~~~a~~~~----------g~~tg 155 (376)
++.+|+|+|.+ .|++++.+++++++++++++...|+++++++||.|++|++++..++++++|++ |+++|
T Consensus 84 ~e~l~~~~~~~-~L~~~p~~~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~tg 162 (414)
T PTZ00280 84 MEKFWEQCIFK-YLRCEPEEHYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTG 162 (414)
T ss_pred HHHHHHHHHHH-hhccCCCCCceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCceeE
Confidence 99999999876 69999999999999999999999999999999999999999999999999999 99999
Q ss_pred EEEecCCCceEEEEeeCCeeccccceeecccHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHhcccccCCcccc-c--
Q psy16631 156 VVLDSGDGVTHAVPIYEGFAMPHSIMRNDIAGRDVTRYLKLLLRKEGVNFRTTAEFEIVRTIKEKACYLSSNPVKE-E-- 232 (376)
Q Consensus 156 lVVDiG~~~t~i~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~-~-- 232 (376)
||||+|++.|+|+||+||+++.++++++++||++++++|.++|++++.++......+.++++|+++||++.++.++ +
T Consensus 163 lVVDiG~~~T~i~PV~~G~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~~~ 242 (414)
T PTZ00280 163 TVIDSGDGVTHVIPVVDGYVIGSSIKHIPLAGRDITNFIQQMLRERGEPIPAEDILLLAQRIKEKYCYVAPDIAKEFEKY 242 (414)
T ss_pred EEEECCCCceEEEEEECCEEcccceEEecCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCcccCcHHHHHHHh
Confidence 9999999999999999999999999999999999999999999998877765566789999999999999876554 1
Q ss_pred --cCCCCceEEECCC---Cc--EEEeccccccccccccCCCCCCCC-CCCHHHHHHHHHHhCCHHHHHHhhcCeEeccCc
Q psy16631 233 --TTDSEKHTYVLPD---GS--SLDIGHARFRAPEVLFRPDLIGEE-SEGIHDVLYYAIQKSDLDLRKVLYQNIVLSGGS 304 (376)
Q Consensus 233 --~~~~~~~~~~lpd---~~--~i~v~~~r~~~~E~lF~p~~~~~~-~~~l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~ 304 (376)
........|.+|| |. .+.++.+|+.+||+||+|++++.+ ..+|+++|.++|.+||+|+|+.|++||||+||+
T Consensus 243 ~~~~~~~~~~~~~~d~~~g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~ 322 (414)
T PTZ00280 243 DSDPKNHFKKYTAVNSVTKKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGS 322 (414)
T ss_pred hcCcccccceEECCCCCCCCccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCc
Confidence 1122345688887 33 899999999999999999987654 459999999999999999999999999999999
Q ss_pred ccccCHHHHHHHHHHhhC----------------CCCceEEEeCCCCCccchhhhHHHhhccccccccceeHHHHhhcCc
Q psy16631 305 TLFKGFGDRLLAEIRKNA----------------PKDLKIRISAPQERLYSTWIGGSILASLDTFKRMWVSKREFDEDGK 368 (376)
Q Consensus 305 s~i~Gl~~rl~~eL~~~~----------------~~~~~i~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itk~ey~e~G~ 368 (376)
|++|||.+||++||.+++ |...+++|..++++.+++|+||||+|++++|+++||||+||+|+|+
T Consensus 323 s~~~Gf~eRL~~El~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~W~GgSilas~~~f~~~~itk~eY~E~G~ 402 (414)
T PTZ00280 323 TMFKGFDKRLQRDVRKRVDRRLKKAEELSGGKLKPIPIDVNVVSHPRQRYAVWYGGSMLASSPEFEKVCHTKAEYDEYGP 402 (414)
T ss_pred ccCcCHHHHHHHHHHHhccccccccccccccccCCCCceEEEecCCccceeEEEChhhcccCcchhhheEEHHHHhccCh
Confidence 999999999999999986 3456788998889999999999999999999999999999999999
Q ss_pred hhhhhc
Q psy16631 369 RAIHRK 374 (376)
Q Consensus 369 ~~~~~k 374 (376)
++++|+
T Consensus 403 ~i~~~~ 408 (414)
T PTZ00280 403 SICRYN 408 (414)
T ss_pred Hheeec
Confidence 999886
No 8
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=100.00 E-value=2.3e-77 Score=575.44 Aligned_cols=363 Identities=47% Similarity=0.898 Sum_probs=321.0
Q ss_pred CCCcEEEeCCCcceEEEEcCCCCCCeeccccceecCccccccCCCCCCeeeCcchhhccCcceeeccccCCcccCHHHHH
Q psy16631 8 VNQPVVIDNGSGVIKAGFAGDQVPKCCFPNYIGRPKHIRVMAGALEGDIFVGPKAEEHRGLLSIHYPMEHGIITDWNDME 87 (376)
Q Consensus 8 ~~~~vViD~Gs~~~k~G~a~~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~d~~~~~ 87 (376)
+.++||||+||.+||+||||++.|+.++||+++++.... ....+++|+++........+.+|+++|.+.||+.++
T Consensus 3 ~~~~vViD~Gs~~~k~G~age~~P~~v~ps~~~~~~~~~-----~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~~~~~~e 77 (393)
T PF00022_consen 3 ENKPVVIDNGSSTIKAGFAGEDLPRVVIPSVVGRPRDKN-----SSNDYYVGDEALSPRSNLELRSPIENGVIVDWDALE 77 (393)
T ss_dssp SSSEEEEEECSSEEEEEETTSSS-SEEEESEEEEESSSS-----SSSSCEETHHHHHTGTGEEEEESEETTEESSHHHHH
T ss_pred CCCEEEEECCCceEEEEECCCCCCCCcCCCccccccccc-----cceeEEeecccccchhheeeeeeccccccccccccc
Confidence 467999999999999999999999999999999876532 123678998865566777899999999999999999
Q ss_pred HHHHHhhcCccCCCCCCCCcEEEEeCCCCChHhHHHHHHHhhcccCCCceecchhhhhhhhhcCCceEEEEecCCCceEE
Q psy16631 88 RIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNREKAAEIFFESFNVPALYVSMQAVLSLYATGRTTGVVLDSGDGVTHA 167 (376)
Q Consensus 88 ~~l~~~~~~~~l~~~~~~~~vvl~~~~~~~~~~r~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~~t~i 167 (376)
.+|+++|.+ .|.++++++++++++|+++++..|+++++++||.|++|++++++++++|+|++|.+||||||+|++.|+|
T Consensus 78 ~i~~~~~~~-~l~~~~~~~~vll~~~~~~~~~~r~~l~e~lfE~~~~~~v~~~~~~~~a~~~~g~~tglVVD~G~~~t~v 156 (393)
T PF00022_consen 78 EIWDYIFSN-LLKVDPSDHPVLLTEPPFNPRSQREKLAEILFEKFGVPSVYFIPSPLLALYASGRTTGLVVDIGYSSTSV 156 (393)
T ss_dssp HHHHHHHHT-TT-SSGGGSEEEEEESTT--HHHHHHHHHHHHHTS--SEEEEEEHHHHHHHHTTBSSEEEEEESSS-EEE
T ss_pred ccccccccc-ccccccccceeeeeccccCCchhhhhhhhhhhcccccceeeeeecccccccccccccccccccceeeeee
Confidence 999999986 6999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCeeccccceeecccHHHHHHHHHHHHHhcCCC-----------------CccchHHHHHHHHHHhcccccCCccc
Q psy16631 168 VPIYEGFAMPHSIMRNDIAGRDVTRYLKLLLRKEGVN-----------------FRTTAEFEIVRTIKEKACYLSSNPVK 230 (376)
Q Consensus 168 ~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~-----------------~~~~~~~~~~~~iK~~~~~~~~~~~~ 230 (376)
+||+||+++.++++++++||++++++|+++|..++.. +....+...++++|+++|+++.++..
T Consensus 157 ~pV~dG~~~~~~~~~~~~GG~~lt~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~ 236 (393)
T PF00022_consen 157 VPVVDGYVLPHSIKRSPIGGDDLTEYLKELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPDE 236 (393)
T ss_dssp EEEETTEE-GGGBEEES-SHHHHHHHHHHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHHH
T ss_pred eeeeeccccccccccccccHHHHHHHHHHHHHhhccccccccccccccccccccccchhhhccchhccchhhhccccccc
Confidence 9999999999999999999999999999999997332 22334678999999999999998763
Q ss_pred c---ccCCCCceEEECCCCcEEEeccccccccccccCCCCCCCCCC-------CHHHHHHHHHHhCCHHHHHHhhcCeEe
Q psy16631 231 E---ETTDSEKHTYVLPDGSSLDIGHARFRAPEVLFRPDLIGEESE-------GIHDVLYYAIQKSDLDLRKVLYQNIVL 300 (376)
Q Consensus 231 ~---~~~~~~~~~~~lpd~~~i~v~~~r~~~~E~lF~p~~~~~~~~-------~l~~~I~~~i~~~~~d~r~~l~~nIvl 300 (376)
. .........|.+|||+.+.++.+|+.+||+||+|+..+.+.. +|+++|.++|++||+|.|+.|++||+|
T Consensus 237 ~~~~~~~~~~~~~~~lPdg~~i~~~~er~~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nIvl 316 (393)
T PF00022_consen 237 EQEEQASENPEKSYELPDGQTIILGKERFRIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNIVL 316 (393)
T ss_dssp HHHHHHCSTTTEEEE-TTSSEEEESTHHHHHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTEEE
T ss_pred ccccccccccceecccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhccccccccccccceEE
Confidence 1 224567788999999999999999999999999998877766 999999999999999999999999999
Q ss_pred ccCcccccCHHHHHHHHHHhhCCCCceEEEeCCC-CCccchhhhHHHhhccccccccceeHHHHhhcCchhhhhccC
Q psy16631 301 SGGSTLFKGFGDRLLAEIRKNAPKDLKIRISAPQ-ERLYSTWIGGSILASLDTFKRMWVSKREFDEDGKRAIHRKTF 376 (376)
Q Consensus 301 ~GG~s~i~Gl~~rl~~eL~~~~~~~~~i~v~~~~-~~~~~~w~Gasi~a~l~~~~~~~itk~ey~e~G~~~~~~k~~ 376 (376)
|||+|++|||.+||++||..+.+...+++|..++ +|.+++|+||||+|++++|+++||||+||+|+|+++++||||
T Consensus 317 ~GG~S~i~G~~eRL~~eL~~~~~~~~~~~v~~~~~~~~~~aW~Ggsilasl~~f~~~~itr~eYeE~G~~~i~rkc~ 393 (393)
T PF00022_consen 317 TGGSSLIPGFKERLQQELRSLLPSSTKVKVIAPPSDRQFAAWIGGSILASLSSFQSFWITREEYEEYGPSIIHRKCF 393 (393)
T ss_dssp ESGGGGSTTHHHHHHHHHHHHSGTTSTEEEE--T-TTTSHHHHHHHHHHTSGGGGGTSEEHHHHHHHGGGGHHHHT-
T ss_pred ecccccccchHHHHHHHhhhhhhccccceeccCchhhhhcccccceeeeccccccceeeeHHHHhCcCcceeeecCC
Confidence 9999999999999999999999988899999998 999999999999999999999999999999999999999997
No 9
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=100.00 E-value=6.5e-76 Score=560.97 Aligned_cols=365 Identities=58% Similarity=1.044 Sum_probs=334.9
Q ss_pred CcEEEeCCCcceEEEEcCCCCCCeeccccceecCccccccCCCCCCeeeCcchhhccCcceeeccccCCcccCHHHHHHH
Q psy16631 10 QPVVIDNGSGVIKAGFAGDQVPKCCFPNYIGRPKHIRVMAGALEGDIFVGPKAEEHRGLLSIHYPMEHGIITDWNDMERI 89 (376)
Q Consensus 10 ~~vViD~Gs~~~k~G~a~~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~d~~~~~~~ 89 (376)
++||||+||++||+||++++.|++++||+++++++.....+ ..+.+++|+++...++...+.+|+++|.+.||+.++.+
T Consensus 2 ~~iviD~Gs~~~k~G~~~~~~P~~~~ps~v~~~~~~~~~~~-~~~~~~~G~~a~~~~~~~~~~~P~~~G~i~d~~~~e~i 80 (373)
T smart00268 2 PAIVIDNGSGTIKAGFAGEDEPQVVFPSIVGRPKDGKGMVG-DAKDTFVGDEAQEKRGGLELKYPIEHGIVENWDDMEKI 80 (373)
T ss_pred CeEEEECCCCcEEEeeCCCCCCcEEccceeeEecccccccC-CCcceEecchhhhcCCCceecCCCcCCEEeCHHHHHHH
Confidence 58999999999999999999999999999998765321100 23468899998766666688999999999999999999
Q ss_pred HHHhhcCccCCCCCCCCcEEEEeCCCCChHhHHHHHHHhhcccCCCceecchhhhhhhhhcCCceEEEEecCCCceEEEE
Q psy16631 90 WQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNREKAAEIFFESFNVPALYVSMQAVLSLYATGRTTGVVLDSGDGVTHAVP 169 (376)
Q Consensus 90 l~~~~~~~~l~~~~~~~~vvl~~~~~~~~~~r~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~~t~i~p 169 (376)
|+++|.+ .|+++++++++++++|.+.++..|+++++++||.|+++++++++++++++|++|.++|+|||+|++.|+|+|
T Consensus 81 ~~~~~~~-~l~~~~~~~~vll~~p~~~~~~~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v~p 159 (373)
T smart00268 81 WDYTFFN-ELRVEPEEHPVLLTEPPMNPKSNREKILEIMFETFNFPALYIAIQAVLSLYASGRTTGLVIDSGDGVTHVVP 159 (373)
T ss_pred HHHHHhh-hcCCCCccCeeEEecCCCCCHHHHHHHHHHhhccCCCCeEEEeccHHHHHHhCCCCEEEEEecCCCcceEEE
Confidence 9999975 689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCeeccccceeecccHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHhcccccCCccccc-------cCCCCceEEE
Q psy16631 170 IYEGFAMPHSIMRNDIAGRDVTRYLKLLLRKEGVNFRTTAEFEIVRTIKEKACYLSSNPVKEE-------TTDSEKHTYV 242 (376)
Q Consensus 170 v~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~-------~~~~~~~~~~ 242 (376)
|+||+++.++++++++||++++++|.++|+.++..+....+.+.++++|+++|+++.++.++. ........|.
T Consensus 160 v~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (373)
T smart00268 160 VVDGYVLPHAIKRIDIAGRDLTDYLKELLSERGYQFNSSAEFEIVREIKEKLCYVAEDFEKEMKKARESSESSKLEKTYE 239 (373)
T ss_pred EECCEEchhhheeccCcHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHhhhheeeecCChHHHHHHhhhcccccccceeEE
Confidence 999999999999999999999999999998866556555677899999999999998765541 1234567899
Q ss_pred CCCCcEEEeccccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHHhhcCeEeccCcccccCHHHHHHHHHHhhC
Q psy16631 243 LPDGSSLDIGHARFRAPEVLFRPDLIGEESEGIHDVLYYAIQKSDLDLRKVLYQNIVLSGGSTLFKGFGDRLLAEIRKNA 322 (376)
Q Consensus 243 lpd~~~i~v~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~Gl~~rl~~eL~~~~ 322 (376)
+|||..+.++.+|+.++|+||+|+..+.+..+|+++|.++|.+||+|+|+.|++||+||||+|++|||.+||++||..+.
T Consensus 240 lpdg~~~~~~~er~~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~ 319 (373)
T smart00268 240 LPDGNTIKVGNERFRIPEILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLA 319 (373)
T ss_pred CCCCCEEEEChHHeeCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhC
Confidence 99999999999999999999999999989999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEeCCCCCccchhhhHHHhhccccccccceeHHHHhhcCchhhhhccC
Q psy16631 323 PKDLKIRISAPQERLYSTWIGGSILASLDTFKRMWVSKREFDEDGKRAIHRKTF 376 (376)
Q Consensus 323 ~~~~~i~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itk~ey~e~G~~~~~~k~~ 376 (376)
|...++++..++++.+++|.|||++|++++|++.||||+||+|+|+++++||||
T Consensus 320 p~~~~v~v~~~~~~~~~~W~G~silas~~~f~~~~vtk~eY~E~G~~i~~~k~~ 373 (373)
T smart00268 320 PKKLKVKVIAPPERKYSVWLGGSILASLSTFEDMWITKKEYEEHGSQIVERKCF 373 (373)
T ss_pred CCCceeEEecCCCCccceEeCcccccCccchhhhEEEHHHHhhhCcceEEeecC
Confidence 988889999889999999999999999999999999999999999999999997
No 10
>KOG0677|consensus
Probab=100.00 E-value=1.2e-74 Score=490.01 Aligned_cols=365 Identities=45% Similarity=0.836 Sum_probs=335.8
Q ss_pred CCcEEEeCCCcceEEEEcCCCCCCeeccccceecCcccc--ccCCCCCCeeeCcchhhccCcceeeccccCCcccCHHHH
Q psy16631 9 NQPVVIDNGSGVIKAGFAGDQVPKCCFPNYIGRPKHIRV--MAGALEGDIFVGPKAEEHRGLLSIHYPMEHGIITDWNDM 86 (376)
Q Consensus 9 ~~~vViD~Gs~~~k~G~a~~~~P~~~~ps~v~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~d~~~~ 86 (376)
.++||.|+|+.+.|+||||++-|.++||+.+++|--... .....-+++.+|+++.+.+..+++.||+++|.+.|||+.
T Consensus 4 ~~viV~DnGTGfVKcGyAg~NFP~~~FPs~VGRPilR~~e~~g~~~iKD~mvGdeaselRs~L~i~YPmeNGivrnwddM 83 (389)
T KOG0677|consen 4 RNVIVCDNGTGFVKCGYAGENFPTHIFPSIVGRPILRAEEKVGNIEIKDLMVGDEASELRSLLDINYPMENGIVRNWDDM 83 (389)
T ss_pred CCeEEEeCCCceEEeccccCCCcccccchhcCchhhhhhhhccCeehhhheccchHHHHHHHHhcCCccccccccChHHH
Confidence 579999999999999999999999999999999742110 011123688999999999999999999999999999999
Q ss_pred HHHHHHhhcCccCCCCCCCCcEEEEeCCCCChHhHHHHHHHhhcccCCCceecchhhhhhhhhcCCceEEEEecCCCceE
Q psy16631 87 ERIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNREKAAEIFFESFNVPALYVSMQAVLSLYATGRTTGVVLDSGDGVTH 166 (376)
Q Consensus 87 ~~~l~~~~~~~~l~~~~~~~~vvl~~~~~~~~~~r~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~~t~ 166 (376)
+++|+|.|.+ +|+++|.+.++++++||++|.+.|+++++.+||+++|.++++.-++++++|+.|..||+|||.|.+.|+
T Consensus 84 ~h~WDytF~e-kl~idp~~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLtLYAQGL~tGvVvDSGDGVTH 162 (389)
T KOG0677|consen 84 EHVWDYTFGE-KLKIDPTNCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLTLYAQGLLTGVVVDSGDGVTH 162 (389)
T ss_pred HHHHHhhhhh-hccCCCccCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHHHHHhcccceEEEecCCCeeE
Confidence 9999999995 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCeeccccceeecccHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHhcccccCCccccc----cCCCCceEEE
Q psy16631 167 AVPIYEGFAMPHSIMRNDIAGRDVTRYLKLLLRKEGVNFRTTAEFEIVRTIKEKACYLSSNPVKEE----TTDSEKHTYV 242 (376)
Q Consensus 167 i~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~----~~~~~~~~~~ 242 (376)
|+||++|+.+++-.++++++|+++++||.++|..+|+.++...+.+.++.+|+++||++-+.+.+. ...-...+|+
T Consensus 163 i~PVye~~~l~HLtrRldvAGRdiTryLi~LLl~rGYafN~tADFETVR~iKEKLCYisYd~e~e~kLalETTvLv~~Yt 242 (389)
T KOG0677|consen 163 IVPVYEGFVLPHLTRRLDVAGRDITRYLIKLLLRRGYAFNHTADFETVREIKEKLCYISYDLELEQKLALETTVLVESYT 242 (389)
T ss_pred EeeeecceehhhhhhhccccchhHHHHHHHHHHhhccccccccchHHHHHHHhhheeEeechhhhhHhhhhheeeeeeee
Confidence 999999999999999999999999999999999999999999999999999999999998876551 2334567899
Q ss_pred CCCCcEEEeccccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHHhhcCeEeccCcccccCHHHHHHHHHHhhC
Q psy16631 243 LPDGSSLDIGHARFRAPEVLFRPDLIGEESEGIHDVLYYAIQKSDLDLRKVLYQNIVLSGGSTLFKGFGDRLLAEIRKNA 322 (376)
Q Consensus 243 lpd~~~i~v~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~Gl~~rl~~eL~~~~ 322 (376)
||||..|.++-|||.+||+||+|.+++.+.+++.+++.++|+..++|.|..++++|||+||+++.||+..||++||+++.
T Consensus 243 LPDGRvIkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSRLEkElkqly 322 (389)
T KOG0677|consen 243 LPDGRVIKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSRLEKELKQLY 322 (389)
T ss_pred cCCCcEEEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred C-----------CCceEEEeCCCCCccchhhhHHHhhcc-ccccccceeHHHHhhcCchhhhhc
Q psy16631 323 P-----------KDLKIRISAPQERLYSTWIGGSILASL-DTFKRMWVSKREFDEDGKRAIHRK 374 (376)
Q Consensus 323 ~-----------~~~~i~v~~~~~~~~~~w~Gasi~a~l-~~~~~~~itk~ey~e~G~~~~~~k 374 (376)
- ..++++|-.+|.+.+.+++||+.+|.+ ..-+++|+||+||+|.|.+++.+.
T Consensus 323 l~rVL~~d~~~l~KfkiRIEdPPrRKhMVflGGAVLA~imkD~d~fW~skqeyqE~G~~~l~k~ 386 (389)
T KOG0677|consen 323 LDRVLKGDTDKLKKFKIRIEDPPRRKHMVFLGGAVLAGIMKDKDEFWMSKQEYQEEGINVLNKL 386 (389)
T ss_pred HHHHHcCChhhhhheEEeccCCCccceeEEEchHHHHHHhcCCccceecHHHHHhhhHHHHHhh
Confidence 1 235788889999999999999999985 567899999999999999988764
No 11
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=100.00 E-value=1.6e-73 Score=543.91 Aligned_cols=363 Identities=60% Similarity=1.056 Sum_probs=332.6
Q ss_pred cEEEeCCCcceEEEEcCCCCCCeeccccceecCccccccCCCCCCeeeCcchhhccCc-ceeeccccCCcccCHHHHHHH
Q psy16631 11 PVVIDNGSGVIKAGFAGDQVPKCCFPNYIGRPKHIRVMAGALEGDIFVGPKAEEHRGL-LSIHYPMEHGIITDWNDMERI 89 (376)
Q Consensus 11 ~vViD~Gs~~~k~G~a~~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~p~~~g~i~d~~~~~~~ 89 (376)
+||||+||+++|+||+|++.|++++||+++++++.....+.+...+++|+++...... +.+.+|+++|.+.||+.++.+
T Consensus 1 ~iViD~Gs~~~r~G~a~~~~p~~~~ps~v~~~~~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~~P~~~G~i~d~~~~e~~ 80 (371)
T cd00012 1 AVVIDNGSGTIKAGFAGEDAPRVVFPSCVGRPKHQSVMVGAGDKDYFVGEEALEKRGLGLELIYPIEHGIVVDWDDMEKI 80 (371)
T ss_pred CEEEECCCCeEEEEeCCCCCCceEeeccceeecCcccccccCCCceEEchhhhhCCCCceEEcccccCCEEeCHHHHHHH
Confidence 6899999999999999999999999999998766433333345788999998665543 788999999999999999999
Q ss_pred HHHhhcCccCCCCCCCCcEEEEeCCCCChHhHHHHHHHhhcccCCCceecchhhhhhhhhcCCceEEEEecCCCceEEEE
Q psy16631 90 WQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNREKAAEIFFESFNVPALYVSMQAVLSLYATGRTTGVVLDSGDGVTHAVP 169 (376)
Q Consensus 90 l~~~~~~~~l~~~~~~~~vvl~~~~~~~~~~r~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~~t~i~p 169 (376)
|+++|.+ .+..+++++++++++|+++++..|+++++++||.++++++++++++++++|++|.++|+|||+|++.|+|+|
T Consensus 81 ~~~~~~~-~l~~~~~~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~i~p 159 (371)
T cd00012 81 WDHLFFN-ELKVNPEEHPVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAVLSLYASGRTTGLVVDSGDGVTHVVP 159 (371)
T ss_pred HHHHHHH-hcCCCCCCCceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHHHHHHhcCCCeEEEEECCCCeeEEEE
Confidence 9999975 688888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCeeccccceeecccHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHhcccccCCcccc-----ccCCCCceEEECC
Q psy16631 170 IYEGFAMPHSIMRNDIAGRDVTRYLKLLLRKEGVNFRTTAEFEIVRTIKEKACYLSSNPVKE-----ETTDSEKHTYVLP 244 (376)
Q Consensus 170 v~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~-----~~~~~~~~~~~lp 244 (376)
|+||+++.+++.++++||+++++++.++|+.++..+....+...++++|+++|+++.++.++ .........|.+|
T Consensus 160 v~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~lp 239 (371)
T cd00012 160 VYDGYVLPHAIKRLDLAGRDLTRYLKELLRERGYELNSSDEREIVRDIKEKLCYVALDIEEEQDKSAKETSLLEKTYELP 239 (371)
T ss_pred EECCEEchhhheeccccHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHhheeecCCHHHHHHhhhccCCccceeEECC
Confidence 99999999999999999999999999999998776666677899999999999999876543 1234456789999
Q ss_pred CCcEEEeccccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHHhhcCeEeccCcccccCHHHHHHHHHHhhCCC
Q psy16631 245 DGSSLDIGHARFRAPEVLFRPDLIGEESEGIHDVLYYAIQKSDLDLRKVLYQNIVLSGGSTLFKGFGDRLLAEIRKNAPK 324 (376)
Q Consensus 245 d~~~i~v~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~Gl~~rl~~eL~~~~~~ 324 (376)
|++.+.++.+|+.+||+||+|+..+....+|+++|.++|..||.+.|+.+++||+||||+|++|||.+||++||..+.|.
T Consensus 240 d~~~i~~~~er~~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~ 319 (371)
T cd00012 240 DGRTIKVGNERFRAPEILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPP 319 (371)
T ss_pred CCeEEEEChHHhhChHhcCChhhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCc
Confidence 99999999999999999999999888899999999999999999999999999999999999999999999999999986
Q ss_pred --CceEEEeCCCCCccchhhhHHHhhccccccccceeHHHHhhcCchhhhhc
Q psy16631 325 --DLKIRISAPQERLYSTWIGGSILASLDTFKRMWVSKREFDEDGKRAIHRK 374 (376)
Q Consensus 325 --~~~i~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itk~ey~e~G~~~~~~k 374 (376)
...+++...++|.+++|+|||++|++++|+++||||+||+|+|+++++||
T Consensus 320 ~~~~~~~~~~~~~~~~~aw~G~si~as~~~~~~~~itk~eY~E~G~~~~~~k 371 (371)
T cd00012 320 SKDTKVKVIAPPERKYSVWLGGSILASLSTFQQLWITKEEYEEHGPSIVHRK 371 (371)
T ss_pred ccceEEEEccCCCccccEEeCchhhcCchhhhheEeeHHHHhhhCchhEecC
Confidence 55678888889999999999999999999999999999999999999987
No 12
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=1.1e-68 Score=508.90 Aligned_cols=369 Identities=48% Similarity=0.892 Sum_probs=331.5
Q ss_pred CCCc-EEEeCCCcceEEEEcCCCCCCeeccccceecC-ccccccCCCCCCeeeCcchhhccC--cceeeccccCCcccCH
Q psy16631 8 VNQP-VVIDNGSGVIKAGFAGDQVPKCCFPNYIGRPK-HIRVMAGALEGDIFVGPKAEEHRG--LLSIHYPMEHGIITDW 83 (376)
Q Consensus 8 ~~~~-vViD~Gs~~~k~G~a~~~~P~~~~ps~v~~~~-~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~p~~~g~i~d~ 83 (376)
.+.+ ||||+||+++|+||+|++.|+.++|+.+++.+ +.....+...++.++|+++....+ ...+++|+++|.|.||
T Consensus 4 ~~~~~iVIDnGS~~~k~Gfag~~~P~~V~ps~~~~~~~~~~~~~~~~~~~~~v~ne~~~~~~~~~~~~~~p~~~g~i~~W 83 (444)
T COG5277 4 DNVPTIVIDNGSGTTKAGFAGNDTPTTVFPSIVGRRRDEDSVMEDTEEKDTYVGNEAQNDRDNSLLELRYPIENGIILNW 83 (444)
T ss_pred CCCCeEEEeCCCceEEeeecCCCCceeecccccccccccccccccccccccccCchhhhccCCccceeecccccCccCCc
Confidence 3344 99999999999999999999999999999886 333333445678889998866655 6788999999999999
Q ss_pred HHHHHHHHHhhcCc-cCCCCCCCCcEEEEeCCCCChHhHHHHHHHhhcccCCCceecchhhhhhhhhcCCc--eEEEEec
Q psy16631 84 NDMERIWQYVYSND-QLQTFSEEHPVLLTEAPLNPRRNREKAAEIFFESFNVPALYVSMQAVLSLYATGRT--TGVVLDS 160 (376)
Q Consensus 84 ~~~~~~l~~~~~~~-~l~~~~~~~~vvl~~~~~~~~~~r~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g~~--tglVVDi 160 (376)
+.++++|+|+|.+. .+...+.++|+++++|++++...|+++++++||.|+++++++..++++++|+.|.. +|+|||+
T Consensus 84 ~~~e~~w~~~~~~~~~~~~~~~~~pllltep~~n~~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g~~~~~g~ViD~ 163 (444)
T COG5277 84 DAMEQIWDYTFFNKGDLLPSPEEHPLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAVLSLYASGSSDETGLVIDS 163 (444)
T ss_pred HHHHHHHHHhhcchhhccCCCcCCceEEeccCCCcHHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcCCCCCceEEEEc
Confidence 99999999999862 47788899999999999999999999999999999999999999999999999999 9999999
Q ss_pred CCCceEEEEeeCCeeccccceeecccHHHHHHHHHHHHHh-----cCCCCccc---hHHHHHHHHHHhcc-------ccc
Q psy16631 161 GDGVTHAVPIYEGFAMPHSIMRNDIAGRDVTRYLKLLLRK-----EGVNFRTT---AEFEIVRTIKEKAC-------YLS 225 (376)
Q Consensus 161 G~~~t~i~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~-----~~~~~~~~---~~~~~~~~iK~~~~-------~~~ 225 (376)
|++.|+|+||+||..+.+++.++++||++++.+|.++|.. +++.+... .+.+.++.+|++.| |+.
T Consensus 164 G~~~t~v~PV~DG~~l~~a~~ri~~gG~~it~~l~~lL~~~~~~~~~~~l~~e~~~~~~ei~~~ik~e~~~~~~~~~y~~ 243 (444)
T COG5277 164 GDSVTHVIPVVDGIVLPKAVKRIDIGGRDITDYLKKLLREKYPPSRGYNLKSELVEYSSEIVNEIKEEVCETDDESAYVS 243 (444)
T ss_pred CCCceeeEeeeccccccccceeeecCcHHHHHHHHHHHhhcccccCCcccccccccccHHHHHHHHHhhccccccccchh
Confidence 9999999999999999999999999999999999999999 55555544 45899999999999 776
Q ss_pred CCcccc-----c-----c----------CCCCceEEECCCCcEEEeccc-cccccccccCCC--CCCCCCCC--------
Q psy16631 226 SNPVKE-----E-----T----------TDSEKHTYVLPDGSSLDIGHA-RFRAPEVLFRPD--LIGEESEG-------- 274 (376)
Q Consensus 226 ~~~~~~-----~-----~----------~~~~~~~~~lpd~~~i~v~~~-r~~~~E~lF~p~--~~~~~~~~-------- 274 (376)
.+..++ . . .......+.+|+++.+.+..+ ||.+||.+|+|. ..+.+..+
T Consensus 244 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~e~rf~~pE~lF~pe~~~~~l~~~~~~~~~~~~ 323 (444)
T COG5277 244 LDAEEEFEEEEEKPAEKSTESTFQLSKETSIAKESKELPDGEEIEFGNEERFKAPEILFKPELPISGLEEAGKIDESKQE 323 (444)
T ss_pred hcchHHHHHHhhhhhhhcccccccccchhccccccccCCCCceEeechhhhhhcchhhcCCccccccccccccchhhhhh
Confidence 654433 0 0 223456788999999999999 999999999999 66655555
Q ss_pred -------------------HHHHHHHHHHhCCHHHHHHhhcCeEeccCcccccCHHHHHHHHHHhhCCCCceEEEeCCCC
Q psy16631 275 -------------------IHDVLYYAIQKSDLDLRKVLYQNIVLSGGSTLFKGFGDRLLAEIRKNAPKDLKIRISAPQE 335 (376)
Q Consensus 275 -------------------l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~Gl~~rl~~eL~~~~~~~~~i~v~~~~~ 335 (376)
|++++.++|..||.+.|+.|++|||||||+|++|||.+||++||+.+.|....+.|..+++
T Consensus 324 ~~~~~~~~~~~~~~~~~~gl~e~v~~si~~~~~~~r~~l~~nivitGGts~~pg~~~Rl~~el~~~~p~~~~v~v~~~~~ 403 (444)
T COG5277 324 LVAENYEISPTNLGNDIAGLPELVYQSIQICDEDVRKSLYSNIVLTGGTSKIPGFAERLQKELTSLAPSIWKVSVIPPPD 403 (444)
T ss_pred hhhhccccccccccccccchHHHHHHHHHhccHHHHHHHhhCEEEecCccCCCCHHHHHHHHHHhhcCCCCceeeecCCc
Confidence 9999999999999999999999999999999999999999999999999989999999999
Q ss_pred CccchhhhHHHhhccccccccceeHHHHhhcCchhhhhccC
Q psy16631 336 RLYSTWIGGSILASLDTFKRMWVSKREFDEDGKRAIHRKTF 376 (376)
Q Consensus 336 ~~~~~w~Gasi~a~l~~~~~~~itk~ey~e~G~~~~~~k~~ 376 (376)
|.+.+|+|||++|++++|+.+||||+||+|+|++++++|||
T Consensus 404 ~~~~~W~GaSila~~~~~~~~~itk~eY~e~G~~~~~~~~~ 444 (444)
T COG5277 404 PSLDAWLGASILASLETFQQLWITKEEYEEHGPDILQEKRF 444 (444)
T ss_pred hhhccccchhhhccccchhheEeeHHHhhhhhhHHHhhccC
Confidence 99999999999999999999999999999999999999996
No 13
>KOG0680|consensus
Probab=100.00 E-value=7.5e-68 Score=460.67 Aligned_cols=360 Identities=29% Similarity=0.546 Sum_probs=324.9
Q ss_pred CCCCcEEEeCCCcceEEEEcCCCCCCeeccccceecCccccccCCCCCCeeeCcchhhccCc--ceeeccccCCcccCHH
Q psy16631 7 IVNQPVVIDNGSGVIKAGFAGDQVPKCCFPNYIGRPKHIRVMAGALEGDIFVGPKAEEHRGL--LSIHYPMEHGIITDWN 84 (376)
Q Consensus 7 ~~~~~vViD~Gs~~~k~G~a~~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~p~~~g~i~d~~ 84 (376)
|+..+||+|+|++++|+|++++..|..+ ||++.+.++ +.++.++|++..+..+. +.+++|+++|.+++|+
T Consensus 1 m~~~tiVlDNGay~~KiG~s~~~~p~~v-pNcl~kaK~-------~~rr~f~~nei~ec~D~ssL~y~rp~erGyLvnW~ 72 (400)
T KOG0680|consen 1 METTTIVLDNGAYNIKIGPSTNKKPFVV-PNCLAKAKF-------GRRRSFLANEIDECKDISSLFYRRPHERGYLVNWD 72 (400)
T ss_pred CCCceEEEcCCceeEEeccCCCCCceec-cchhhhccc-------ccchhhhhhhhhhccCccceEEeehhhcceeEeeh
Confidence 5678999999999999999999999976 999998776 44668899888766554 4567899999999999
Q ss_pred HHHHHHHHhhcCccCCCCCCCCcEEEEeCCCCChHhHHHHHHHhhcccCCCceecchhhhhhhhhc---C--------Cc
Q psy16631 85 DMERIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNREKAAEIFFESFNVPALYVSMQAVLSLYAT---G--------RT 153 (376)
Q Consensus 85 ~~~~~l~~~~~~~~l~~~~~~~~vvl~~~~~~~~~~r~~~~~~lfe~~~~~~v~~~~~~~~a~~~~---g--------~~ 153 (376)
...++|+++|.+..+.++.+++.+++++|-++-+...+...+++||+|+|.+++-...+.++++-. + ..
T Consensus 73 tq~~vWDy~f~~~~~~~~~~~~~ivlTep~~~~psi~~~t~eilFEey~fd~v~kttaa~lva~~~~~~~ne~~tt~~~~ 152 (400)
T KOG0680|consen 73 TQSQVWDYCFGNPGFDVEGKDHNIVLTEPCMTFPSIQEHTDEILFEEYQFDAVLKTTAAVLVAFTKYVRNNEDSTTTSSE 152 (400)
T ss_pred hHHHHHHHHhcCCCcCcccCcceEEEecccccccchhhhHHHHHHHHhccceEeecCHHHhcchhhhccCCccccccccc
Confidence 999999999987666688889999999999999999999999999999999999999988887751 1 23
Q ss_pred eEEEEecCCCceEEEEeeCCeeccccceeecccHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHhcccccCCcccc--
Q psy16631 154 TGVVLDSGDGVTHAVPIYEGFAMPHSIMRNDIAGRDVTRYLKLLLRKEGVNFRTTAEFEIVRTIKEKACYLSSNPVKE-- 231 (376)
Q Consensus 154 tglVVDiG~~~t~i~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~-- 231 (376)
+++|||.|++.|+|+||++|.+...+++++++||+.+|++|++.+..+.++. ..+...++++||..|||++++.+.
T Consensus 153 c~lVIDsGysfThIip~v~g~~~~qaV~RiDvGGK~LTn~LKE~iSyR~lNv--mdET~vVNeiKEdvcfVSqnF~~~m~ 230 (400)
T KOG0680|consen 153 CCLVIDSGYSFTHIIPVVKGIPYYQAVKRIDVGGKALTNLLKETISYRHLNV--MDETYVVNEIKEDVCFVSQNFKEDMD 230 (400)
T ss_pred eEEEEeCCCceEEEehhhcCcchhhceEEeecchHHHHHHHHHHhhhhhhcc--cchhhhhhhhhhheEEechhhHHHHH
Confidence 7899999999999999999999999999999999999999999999886554 567789999999999999988765
Q ss_pred --cc---CCCCceEEECCC-------------------CcEEEeccccccccccccCCCCCCCCCCCHHHHHHHHHHhCC
Q psy16631 232 --ET---TDSEKHTYVLPD-------------------GSSLDIGHARFRAPEVLFRPDLIGEESEGIHDVLYYAIQKSD 287 (376)
Q Consensus 232 --~~---~~~~~~~~~lpd-------------------~~~i~v~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~ 287 (376)
++ .......|.||| .+.|.+..|||.+||+||+|++++..++||+++|.++|..||
T Consensus 231 ~~~~k~~~~~~~i~YvLPDF~T~k~Gyvr~~~vk~~~d~qii~L~nErF~IPEilF~Psdi~I~q~GIpEAV~esl~~~P 310 (400)
T KOG0680|consen 231 IAKTKFQENKVMIDYVLPDFSTSKRGYVRNEDVKLPEDEQIITLTNERFTIPEILFSPSDIGIQQPGIPEAVLESLSMLP 310 (400)
T ss_pred HHhhccccceeEEEEecCCcccccceeEecCCCCCCCCcceeeecccccccchhhcChhhcCcccCCchHHHHHHHHhCH
Confidence 11 223445677765 367889999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCeEeccCcccccCHHHHHHHHHHhhCCCCceEEEeCCCCCccchhhhHHHhhccccccccceeHHHHhhcC
Q psy16631 288 LDLRKVLYQNIVLSGGSTLFKGFGDRLLAEIRKNAPKDLKIRISAPQERLYSTWIGGSILASLDTFKRMWVSKREFDEDG 367 (376)
Q Consensus 288 ~d~r~~l~~nIvl~GG~s~i~Gl~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itk~ey~e~G 367 (376)
.++|+.|+.|||++||++++|||.+||..||+.++|.++.+.|..+.+|..-+|.||+-++.+++|+..||||+||+|+|
T Consensus 311 e~~~p~l~~NIv~iGGn~~fPgF~~RL~~Elr~l~P~d~~v~V~~p~dp~~~~W~~g~~~~~~~~~~~~~itR~dy~E~G 390 (400)
T KOG0680|consen 311 EEVRPLLLENIVCIGGNSNFPGFRQRLARELRSLLPADWEVSVSVPEDPITFAWEGGSEFAKTDSFEKAVITREDYEEHG 390 (400)
T ss_pred HHHHHHHHhcEEEecCccCCcchHHHHHHHHHhhCCccceEEEecCCCcceeeehhccccccCcchhcceecHhhHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhccC
Q psy16631 368 KRAIHRKTF 376 (376)
Q Consensus 368 ~~~~~~k~~ 376 (376)
.++..+|.|
T Consensus 391 ~~~~~~~~~ 399 (400)
T KOG0680|consen 391 PSWCTKKRF 399 (400)
T ss_pred chhhhhhcc
Confidence 999999865
No 14
>KOG0681|consensus
Probab=100.00 E-value=2.9e-56 Score=411.76 Aligned_cols=362 Identities=25% Similarity=0.520 Sum_probs=308.3
Q ss_pred CCCcEEEeCCCcceEEEEcCCCCCCeeccccceecCccccccCCCCCCeeeCcchhhccCc-ceeeccccCCcccCHHHH
Q psy16631 8 VNQPVVIDNGSGVIKAGFAGDQVPKCCFPNYIGRPKHIRVMAGALEGDIFVGPKAEEHRGL-LSIHYPMEHGIITDWNDM 86 (376)
Q Consensus 8 ~~~~vViD~Gs~~~k~G~a~~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~p~~~g~i~d~~~~ 86 (376)
...+||||+||+.+|+||+|+..|+++|+|++.++++... +....+||++....... ...+.|+++.+|+||+.+
T Consensus 22 n~~piVIDNGS~~~RaGw~ge~eP~lvFrNvl~r~Rdrk~----~~s~t~vgnd~~~~~~~Rs~~rSPFd~nVvtNwel~ 97 (645)
T KOG0681|consen 22 NTIPIVIDNGSYECRAGWAGEKEPRLVFRNVLTRPRDRKL----GASVTLVGNDILNFQGVRSSPRSPFDRNVVTNWELM 97 (645)
T ss_pred CCCcEEEeCCceeEeecccCCCCccchhhhhhcccccccc----ccccccccchhhhhhhhhccCCCCCcCCccccHHHH
Confidence 3568999999999999999999999999999999886432 22333677776443332 346899999999999999
Q ss_pred HHHHHHhhcCccCCCCCC--CCcEEEEeCCCCChHhHHHHHHHhhcccCCCceecchhhhhhhhh-cC---CceEEEEec
Q psy16631 87 ERIWQYVYSNDQLQTFSE--EHPVLLTEAPLNPRRNREKAAEIFFESFNVPALYVSMQAVLSLYA-TG---RTTGVVLDS 160 (376)
Q Consensus 87 ~~~l~~~~~~~~l~~~~~--~~~vvl~~~~~~~~~~r~~~~~~lfe~~~~~~v~~~~~~~~a~~~-~g---~~tglVVDi 160 (376)
|++++|+|. +|+++.+ +||+++||..++|...|..+.++|||.+|+|+|.+.-+++.+.|- ++ ..+|+||++
T Consensus 98 E~ilDY~F~--~LG~~~~~idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDslfS~~hN~~~~~~~~~liis~ 175 (645)
T KOG0681|consen 98 EQILDYIFG--KLGVDGQGIDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSLFSFYHNYGKSSNKSGLIISM 175 (645)
T ss_pred HHHHHHHHH--hcCCCccCCCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhHHHHhhccCcccCcceEEEec
Confidence 999999995 6999884 899999999999999999999999999999999999999999983 33 347999999
Q ss_pred CCCceEEEEeeCCeeccccceeecccHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHhcccccCCcccc---------
Q psy16631 161 GDGVTHAVPIYEGFAMPHSIMRNDIAGRDVTRYLKLLLRKEGVNFRTTAEFEIVRTIKEKACYLSSNPVKE--------- 231 (376)
Q Consensus 161 G~~~t~i~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~--------- 231 (376)
|++.|+|.||.||..+...++++++||.+...||.++|+.+++-+....+...++.+++.+||++.|+.++
T Consensus 176 g~~~T~vipvldG~~il~~~kRiN~GG~qa~dYL~~Lmq~Kyp~~~~~~t~sk~E~l~~eHcyis~DY~eei~~~l~~d~ 255 (645)
T KOG0681|consen 176 GHSATHVIPVLDGRLILKDVKRINWGGYQAGDYLSRLMQLKYPFHLNAFTGSKAERLLHEHCYISPDYREEIIKILEMDY 255 (645)
T ss_pred CCCcceeEEEecCchhhhcceeeccCcchHHHHHHHHHhccCccchhhcCHHHHHHHhhhhceeCcchHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999999988655444456666777777777777766432
Q ss_pred -----------------c-----------------------------c-------------------CC-CCc-------
Q psy16631 232 -----------------E-----------------------------T-------------------TD-SEK------- 238 (376)
Q Consensus 232 -----------------~-----------------------------~-------------------~~-~~~------- 238 (376)
. . .. ..+
T Consensus 256 ~d~~~~~~qlP~~evl~~~e~~l~Ae~kqekRlq~~a~lkrv~k~~~re~~redeqql~~~~kaq~e~e~~~D~~q~~~l 335 (645)
T KOG0681|consen 256 YDENRNYFQLPYTEVLAEVELALTAEKKQEKRLQEQAALKRVEKINARENRREDEQQLESYNKAQGEQESNLDLEQKFPL 335 (645)
T ss_pred hhccceEEecccccccchhhhhccHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHhhhchhcCccHhhhchh
Confidence 0 0 00 000
Q ss_pred --------------------------------------------------------------------------------
Q psy16631 239 -------------------------------------------------------------------------------- 238 (376)
Q Consensus 239 -------------------------------------------------------------------------------- 238 (376)
T Consensus 336 l~v~~eL~~d~lk~k~~qr~lkas~dar~rar~eke~Er~~k~~~~r~~~~~swl~e~r~k~~~ller~~~kk~lk~e~~ 415 (645)
T KOG0681|consen 336 LNVPAELDEDQLKEKKKQRILKASTDARLRARVEKELERLNKLEEEREENLISWLEELREKLEKLLERISQKKRLKQELK 415 (645)
T ss_pred hcchhhhCHHHHHHHHHHHHHHhhhhhhccccccchHHHhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence
Q ss_pred --------------------------------eEEECC------------------------------------------
Q psy16631 239 --------------------------------HTYVLP------------------------------------------ 244 (376)
Q Consensus 239 --------------------------------~~~~lp------------------------------------------ 244 (376)
..|-..
T Consensus 416 ~r~s~~Sq~rmr~~~~La~~~~~rrk~~~~t~D~fg~~Dedw~vYe~lee~~~~~~~dl~~l~~~L~e~Dp~F~~~~~~~ 495 (645)
T KOG0681|consen 416 DRKSHASQLRMRALARLAYEQVVRRKRKEATPDNFGARDEDWDVYEDLEEENKSILEDLKSLNHELLEFDPHFTQYVEGT 495 (645)
T ss_pred hhhhhhhHhhhHHHHhhhHHHHHHHhcccCCccccccchhhHHHHHHhhhhhhhHHHHHHHHHHHHHhhCcccccccccc
Confidence 000000
Q ss_pred -------------CCcEEEeccccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHHhhcCeEeccCcccccCHH
Q psy16631 245 -------------DGSSLDIGHARFRAPEVLFRPDLIGEESEGIHDVLYYAIQKSDLDLRKVLYQNIVLSGGSTLFKGFG 311 (376)
Q Consensus 245 -------------d~~~i~v~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~Gl~ 311 (376)
...++.++.||+++||++|+|+++|.+++||.+++..++.+.|.+.++.+.+||+||||+|++||+.
T Consensus 496 ~d~~~~~~p~~~~e~~qlh~nVEriRvPEIiFqPsiiG~dQaGl~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGmk 575 (645)
T KOG0681|consen 496 TDPRNGVLPGFTAEDYQLHLNVERIRVPEIIFQPSIIGIDQAGLAEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGMK 575 (645)
T ss_pred cCcccCcchhHHHhhhhhhhcceeeccceeeeccccccchhhhHHHHHHHHHHhCchhhhHhhhhheEeecccccCcCHH
Confidence 0024557889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCceEEEeCCCCCccchhhhHHHhhccccccccceeHHHHhhcCchhhhhcc
Q psy16631 312 DRLLAEIRKNAPKDLKIRISAPQERLYSTWIGGSILASLDTFKRMWVSKREFDEDGKRAIHRKT 375 (376)
Q Consensus 312 ~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itk~ey~e~G~~~~~~k~ 375 (376)
+||+.||+.+.|-+..+.|+-+.+|...+|.||+-+|...+|...|+||+||+|+|+..++..|
T Consensus 576 eRi~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n~~f~~~~~Tr~dy~E~G~e~~kEh~ 639 (645)
T KOG0681|consen 576 ERIKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAANPTFTLTQITRKDYEEKGEEYLKEHV 639 (645)
T ss_pred HHHHHHhheecccCCceEEEecCCcchhhhhhhHHhhcCcccchhhhhHHhhhhhhHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999998876
No 15
>KOG0678|consensus
Probab=100.00 E-value=9.8e-55 Score=379.29 Aligned_cols=362 Identities=39% Similarity=0.672 Sum_probs=309.4
Q ss_pred CcEEEeCCCcceEEEEcCCCCCCeeccccceecCccccc--------cCCCCCCeeeCcchhhccCcceeeccccCCccc
Q psy16631 10 QPVVIDNGSGVIKAGFAGDQVPKCCFPNYIGRPKHIRVM--------AGALEGDIFVGPKAEEHRGLLSIHYPMEHGIIT 81 (376)
Q Consensus 10 ~~vViD~Gs~~~k~G~a~~~~P~~~~ps~v~~~~~~~~~--------~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~ 81 (376)
.++|+|+|+.++|.||+|+..|.+++|++++......+. .+....++++|+++.. ...+.+.||+++|.+.
T Consensus 5 ~p~V~d~Gtgytklg~agn~~p~~i~p~~ia~~~~~~~s~~~~~~~~~~~~dldf~ig~eal~-~~~ysl~ypiRhg~ve 83 (415)
T KOG0678|consen 5 LPCVIDNGTGYTKLGYAGNTEPQFIIPTAIAVKESAAVSSKATRRVKRGTEDLDFFIGDEALD-ATTYSLKYPIRHGQVE 83 (415)
T ss_pred CceeeccCcceeeeeccccCCcccccceeEEeccccccccchhhhhhccccccceecccHHHh-hcccccccceeccccc
Confidence 349999999999999999999999999999765332211 1234568899999876 5578899999999999
Q ss_pred CHHHHHHHHHHhhcCccCCCCCCCCcEEEEeCCCCChHhHHHHHHHhhcccCCCceecchhhhhhhhhcC--------Cc
Q psy16631 82 DWNDMERIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNREKAAEIFFESFNVPALYVSMQAVLSLYATG--------RT 153 (376)
Q Consensus 82 d~~~~~~~l~~~~~~~~l~~~~~~~~vvl~~~~~~~~~~r~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g--------~~ 153 (376)
|||.++++|..++.+ +|+..|++|..+|++|+.+++++|+.+++++||.|+++.+++.-++++|+-+.- .-
T Consensus 84 ~wd~mer~~~q~ifk-ylr~ePedh~fLlteppln~penreytaeImfEsfnvpglyiAVqavLALaaswts~~v~er~l 162 (415)
T KOG0678|consen 84 DWDLMERFWEQCIFK-YLRAEPEDHYFLLTEPPLNQPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERFL 162 (415)
T ss_pred cHHHHHHHHhhhhhh-hhcCCcccceEEecCCCCCCchhhHHHHHhhhhhccCchHHHHHHHHHHHHHHHHHhhhhhhee
Confidence 999999999999887 799999999999999999999999999999999999999999999999887542 36
Q ss_pred eEEEEecCCCceEEEEeeCCeeccccceeecccHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHhcccccCCcccc-c
Q psy16631 154 TGVVLDSGDGVTHAVPIYEGFAMPHSIMRNDIAGRDVTRYLKLLLRKEGVNFRTTAEFEIVRTIKEKACYLSSNPVKE-E 232 (376)
Q Consensus 154 tglVVDiG~~~t~i~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~-~ 232 (376)
||+|||.|.+.|+|.||.+|+++-++++.+++.|++++-.++++|++++..++.....+.++.+|+++||+.++...+ .
T Consensus 163 tG~VidsGdgvThvipvaEgyVigScik~iPiagrdiT~fiQ~llRer~~~iP~e~sl~tak~iKe~ycy~cPdivkef~ 242 (415)
T KOG0678|consen 163 TGIVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLREREVGIPPEQSLETAKAIKEKYCYTCPDIVKEFA 242 (415)
T ss_pred eeEEEecCCCeeEEEEeecceEEeeeeccccccCCchhHHHHHHhhCCCCCCChHHhhhhhHHHHhhhcccCcHHHHHHH
Confidence 899999999999999999999999999999999999999999999998887776677899999999999999887655 0
Q ss_pred c----CCCCceEE---ECCCC--cEEEeccccccccccccCCCCCCCCC-CCHHHHHHHHHHhCCHHHHHHhhcCeEecc
Q psy16631 233 T----TDSEKHTY---VLPDG--SSLDIGHARFRAPEVLFRPDLIGEES-EGIHDVLYYAIQKSDLDLRKVLYQNIVLSG 302 (376)
Q Consensus 233 ~----~~~~~~~~---~lpd~--~~i~v~~~r~~~~E~lF~p~~~~~~~-~~l~~~I~~~i~~~~~d~r~~l~~nIvl~G 302 (376)
. +..-.+.| ..-.| ..++++.+||..||++|+|.+...++ .+|++.+...|+.||+|.|+.||+||++.|
T Consensus 243 k~d~ep~K~ikq~~~~~~i~~~~~~vDvgyerFlgpEiff~Pe~a~~d~~~~~~~~vd~~Iq~~pIdvrr~ly~nivlsg 322 (415)
T KOG0678|consen 243 KYDREPAKWIKQYTGINVITGKKFVVDVGYERFLGPEIFFHPEFANPDFLTPLSEVVDWVIQHCPIDVRRPLYKNIVLSG 322 (415)
T ss_pred HhccCHHHHHHHHhccchhcCCceeecccHHhhcChhhhcCccccCCccCcchHHHhhhhhhhCCcccchhhhhHHhhcc
Confidence 0 00000111 11122 35677889999999999999877665 579999999999999999999999999999
Q ss_pred CcccccCHHHHHHHHHHhhCC--------------CCceEEEeCCCCCccchhhhHHHhhccccccccceeHHHHhhcCc
Q psy16631 303 GSTLFKGFGDRLLAEIRKNAP--------------KDLKIRISAPQERLYSTWIGGSILASLDTFKRMWVSKREFDEDGK 368 (376)
Q Consensus 303 G~s~i~Gl~~rl~~eL~~~~~--------------~~~~i~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itk~ey~e~G~ 368 (376)
|.++.++|..|++++++.+.. ....++++...-+.+++|.|+|++++.+.|-..+=||++|+|+|+
T Consensus 323 gst~fk~fgr~lqrD~kr~vd~rl~~s~~lsg~k~~~vdvqvish~~qr~avwfggs~lastpef~~~~~tk~~yee~g~ 402 (415)
T KOG0678|consen 323 GSTMFKDFGRRLQRDLKRLVDTRLAESEGLSGIKSKPVDVQVLSHLLQRTAVWFGGSKLASTPEFVPACHTKEDYEEYGP 402 (415)
T ss_pred chHHHHHhhhhccHHHHHHHHHHHHHhcccccCCCCCceeehhhhhhhhcceeccCccccCCcccccccCcchhhhhhCh
Confidence 999999999999999987532 223466666667789999999999999999999999999999999
Q ss_pred hhhhh
Q psy16631 369 RAIHR 373 (376)
Q Consensus 369 ~~~~~ 373 (376)
+|.+.
T Consensus 403 si~r~ 407 (415)
T KOG0678|consen 403 SICRT 407 (415)
T ss_pred hhhhc
Confidence 99875
No 16
>KOG0797|consensus
Probab=100.00 E-value=4.3e-43 Score=322.33 Aligned_cols=308 Identities=22% Similarity=0.409 Sum_probs=237.5
Q ss_pred cceeeccccCCcccC----------HHHHHHHHHHhhcCccCCCCCC---CCcEEEEeCCCCChHhHHHHHHHhhcccCC
Q psy16631 68 LLSIHYPMEHGIITD----------WNDMERIWQYVYSNDQLQTFSE---EHPVLLTEAPLNPRRNREKAAEIFFESFNV 134 (376)
Q Consensus 68 ~~~~~~p~~~g~i~d----------~~~~~~~l~~~~~~~~l~~~~~---~~~vvl~~~~~~~~~~r~~~~~~lfe~~~~ 134 (376)
.+.+++|+++|.+.- .+++++||+|++. +.|++.++ .+.+|++.|...-+...+.+..++|-+++|
T Consensus 178 ~y~l~~Pir~G~fNv~~~y~Slq~l~~dlt~il~yaL~-e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F 256 (618)
T KOG0797|consen 178 PYCLYHPIRRGHFNVSPPYYSLQRLCEDLTAILDYALL-EKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGF 256 (618)
T ss_pred cceeecccccceeccCCcchhHHHHHHHHHHHHHHHHH-HhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhcc
Confidence 467889999998843 4678899999997 48998765 678899989999999999999999999999
Q ss_pred CceecchhhhhhhhhcCCceEEEEecCCCceEEEEeeCCeeccccceeecccHHHHHHHHHHHHHhcCCCC-----ccch
Q psy16631 135 PALYVSMQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPHSIMRNDIAGRDVTRYLKLLLRKEGVNF-----RTTA 209 (376)
Q Consensus 135 ~~v~~~~~~~~a~~~~g~~tglVVDiG~~~t~i~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~-----~~~~ 209 (376)
.++.++++++|++||+|.+++||||||++.|+|+||.||..++++...+++||.++++.+..+|++.+..+ ....
T Consensus 257 ~~~~v~QESlaatfGaGlss~CVVdiGAQkTsIaCVEdGvs~~ntri~L~YGGdDitr~f~~ll~rs~FPy~d~~v~~~~ 336 (618)
T KOG0797|consen 257 NSAVVHQESLAATFGAGLSSACVVDIGAQKTSIACVEDGVSLPNTRIILPYGGDDITRCFLWLLRRSGFPYQDCDVLAPI 336 (618)
T ss_pred ceEEEEhhhhHHHhcCCccceeEEEccCcceeEEEeecCccccCceEEeccCCchHHHHHHHHHHhcCCCcccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999977654 3456
Q ss_pred HHHHHHHHHHhcccccCCcccc-------ccCC--CCceE--------------------------------EECCCCc-
Q psy16631 210 EFEIVRTIKEKACYLSSNPVKE-------ETTD--SEKHT--------------------------------YVLPDGS- 247 (376)
Q Consensus 210 ~~~~~~~iK~~~~~~~~~~~~~-------~~~~--~~~~~--------------------------------~~lpd~~- 247 (376)
++.+++.+|+++|......... ..+. ....+ |.+||-.
T Consensus 337 d~lLl~~LKe~Fc~l~~a~~~vQ~~~F~~R~pn~~~~kytfk~~DE~mlAPlaLF~P~lf~~~~tk~~~~q~~~q~d~~d 416 (618)
T KOG0797|consen 337 DWLLLNQLKEKFCHLRAAELGVQLTVFSYREPNPPTLKYTFKLGDEVMLAPLALFYPNLFVIEGTKSHKNQSFPQPDRED 416 (618)
T ss_pred cHHHHHHHHHHhccccHhhhhhhhhhhhccCCCCcceeeeeeccchhhccchhhhhhhhhhccccccccccccCCCCccc
Confidence 8899999999999876532111 0000 00011 1111100
Q ss_pred ----------------------------EEEec-cccccccccccCCCC---------------C----------C----
Q psy16631 248 ----------------------------SLDIG-HARFRAPEVLFRPDL---------------I----------G---- 269 (376)
Q Consensus 248 ----------------------------~i~v~-~~r~~~~E~lF~p~~---------------~----------~---- 269 (376)
.+... ..|-..||..-.+.+ . .
T Consensus 417 ~fd~e~~~~~~~~~~~~~~g~~~l~ls~~i~~~~~~~~~l~~~~d~~Elg~t~~d~f~p~~~s~~gslaa~~i~n~~~~~ 496 (618)
T KOG0797|consen 417 LFDYEYLLEDTWKQDFGGGGNDGLQLSDSIGFSNRIRDQLPEKPDKEELGVTLKDNFAPLEKSIVGSLAAASIMNKKGLY 496 (618)
T ss_pred ccchhhhhhhcccccccccccccccccccccccccccccccccccchhhccccccccCCchhhhhhhhhhhhhhccccee
Confidence 00000 000011111111110 0 0
Q ss_pred CCCC----CHHHHHHHHHHhC-CHHHHHHhhcCeEeccCcccccCHHHHHHHHHHhhCCCC----ceEEEeCCC---CCc
Q psy16631 270 EESE----GIHDVLYYAIQKS-DLDLRKVLYQNIVLSGGSTLFKGFGDRLLAEIRKNAPKD----LKIRISAPQ---ERL 337 (376)
Q Consensus 270 ~~~~----~l~~~I~~~i~~~-~~d~r~~l~~nIvl~GG~s~i~Gl~~rl~~eL~~~~~~~----~~i~v~~~~---~~~ 337 (376)
..+. ++.+.|..+|..+ ..|.+++|++.|.++||+.++||+.+.|++.+....|.. ..|.|+.++ +|+
T Consensus 497 ~~f~gl~l~ldqsii~sid~~~sdd~~rKl~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~prdMdp~ 576 (618)
T KOG0797|consen 497 ESFYGLLLALDQSIISSIDSALSDDTKRKLFSSILLVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPRDMDPQ 576 (618)
T ss_pred ccccchhhccchhHHHhhhhhccchhhHhhhhHHHhhcccccchhHHHHHHHHHhccCCccccccCceeecCCCcCCCch
Confidence 0112 3445688888877 678899999999999999999999999999998776652 246777665 899
Q ss_pred cchhhhHHHhhccccccccceeHHHHhhcCchhhhhccC
Q psy16631 338 YSTWIGGSILASLDTFKRMWVSKREFDEDGKRAIHRKTF 376 (376)
Q Consensus 338 ~~~w~Gasi~a~l~~~~~~~itk~ey~e~G~~~~~~k~~ 376 (376)
+.+|+||+|+|.++.-+++||++.||+-+|.++++.||.
T Consensus 577 ~VaWKGaaIla~l~~~~ELwI~~~dW~~~G~RvL~~k~~ 615 (618)
T KOG0797|consen 577 FVAWKGAAILAILDFVRELWIENSDWQVHGVRVLQYKKY 615 (618)
T ss_pred heEecchhhhhHHHHHHHHheechhHhhhhhhhhhhccc
Confidence 999999999999999999999999999999999999984
No 17
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=1.5e-38 Score=299.39 Aligned_cols=309 Identities=18% Similarity=0.224 Sum_probs=239.6
Q ss_pred CCCCcEEEeCCCcceEEEEcCCCCCCeeccccceecCccccccCCCCCCeeeCcchhhc----cCcceeeccccCCcccC
Q psy16631 7 IVNQPVVIDNGSGVIKAGFAGDQVPKCCFPNYIGRPKHIRVMAGALEGDIFVGPKAEEH----RGLLSIHYPMEHGIITD 82 (376)
Q Consensus 7 ~~~~~vViD~Gs~~~k~G~a~~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~p~~~g~i~d 82 (376)
++. .++||+||.++|+|+.+++ +....||+++..+. ..+.+++|++|... +....+.+|+++|.+.|
T Consensus 7 ~~~-~vgiDlGt~~t~i~~~~~~-~~~~~ps~v~~~~~-------~~~~~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~d 77 (335)
T PRK13930 7 FSK-DIGIDLGTANTLVYVKGKG-IVLNEPSVVAIDTK-------TGKVLAVGEEAKEMLGRTPGNIEAIRPLKDGVIAD 77 (335)
T ss_pred hcc-ceEEEcCCCcEEEEECCCC-EEEecCCEEEEECC-------CCeEEEEcHHHHHhhhcCCCCeEEeecCCCCeEcC
Confidence 344 4999999999999999775 46677999987543 12467999998543 34567889999999999
Q ss_pred HHHHHHHHHHhhcCccCCCCC-CCCcEEEEeCCCCChHhHHHHHHHhhcccCCCceecchhhhhhhhhcCC-----ceEE
Q psy16631 83 WNDMERIWQYVYSNDQLQTFS-EEHPVLLTEAPLNPRRNREKAAEIFFESFNVPALYVSMQAVLSLYATGR-----TTGV 156 (376)
Q Consensus 83 ~~~~~~~l~~~~~~~~l~~~~-~~~~vvl~~~~~~~~~~r~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tgl 156 (376)
|+..+.+|++++.+ .+...+ ...+++++.|+.++...|+.+.+ +||.+|++.++++++|+||+|++|. .+++
T Consensus 78 ~~~~e~ll~~~~~~-~~~~~~~~~~~vvit~P~~~~~~~r~~~~~-~~e~~g~~~~~lv~ep~AAa~a~g~~~~~~~~~l 155 (335)
T PRK13930 78 FEATEAMLRYFIKK-ARGRRFFRKPRIVICVPSGITEVERRAVRE-AAEHAGAREVYLIEEPMAAAIGAGLPVTEPVGNM 155 (335)
T ss_pred HHHHHHHHHHHHHH-HhhcccCCCCcEEEEECCCCCHHHHHHHHH-HHHHcCCCeEEecccHHHHHHhcCCCcCCCCceE
Confidence 99999999999953 233223 36789999999988888887666 6899999999999999999999987 5789
Q ss_pred EEecCCCceEEEEeeCCeeccccceeecccHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHhcccccCCccccc-cCC
Q psy16631 157 VLDSGDGVTHAVPIYEGFAMPHSIMRNDIAGRDVTRYLKLLLRKEGVNFRTTAEFEIVRTIKEKACYLSSNPVKEE-TTD 235 (376)
Q Consensus 157 VVDiG~~~t~i~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~-~~~ 235 (376)
|||+|+++|+++|+.+|.++.. ...++||.++++.|.+++..+ +.+. ...+.+|++|+++|++..+...+. ...
T Consensus 156 VvDiG~gttdvs~v~~g~~~~~--~~~~lGG~~id~~l~~~l~~~-~~~~--~~~~~ae~~K~~~~~~~~~~~~~~~~~~ 230 (335)
T PRK13930 156 VVDIGGGTTEVAVISLGGIVYS--ESIRVAGDEMDEAIVQYVRRK-YNLL--IGERTAEEIKIEIGSAYPLDEEESMEVR 230 (335)
T ss_pred EEEeCCCeEEEEEEEeCCEEee--cCcCchhHHHHHHHHHHHHHH-hCCC--CCHHHHHHHHHHhhcCcCCCCCceEEEE
Confidence 9999999999999999998764 467999999999999998765 2221 244789999999999876532210 000
Q ss_pred CCceEEECCCCcEEEeccccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHHhhcC-eEeccCcccccCHHHHH
Q psy16631 236 SEKHTYVLPDGSSLDIGHARFRAPEVLFRPDLIGEESEGIHDVLYYAIQKSDLDLRKVLYQN-IVLSGGSTLFKGFGDRL 314 (376)
Q Consensus 236 ~~~~~~~lpd~~~i~v~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~n-Ivl~GG~s~i~Gl~~rl 314 (376)
.....+.+|+ .+.++.+++ .|++|.|. .++.+.|.+++.+|+.+.+..++.| |+|+||+|++|||.+||
T Consensus 231 ~~~~~~~~~~--~~~i~~~~~--~e~i~~~~------~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l 300 (335)
T PRK13930 231 GRDLVTGLPK--TIEISSEEV--REALAEPL------QQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLL 300 (335)
T ss_pred CccCCCCCCe--eEEECHHHH--HHHHHHHH------HHHHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHH
Confidence 0000111222 445555554 47887763 4789999999999999999999987 99999999999999999
Q ss_pred HHHHHhhCCCCceEEEeCCCCCccchhhhHHHhhc
Q psy16631 315 LAEIRKNAPKDLKIRISAPQERLYSTWIGGSILAS 349 (376)
Q Consensus 315 ~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~ 349 (376)
++++. +++....+|..++-.||++++.
T Consensus 301 ~~~~~--------~~v~~~~~p~~ava~Ga~~~~~ 327 (335)
T PRK13930 301 SEETG--------LPVHIAEDPLTCVARGTGKALE 327 (335)
T ss_pred HHHHC--------CCceecCCHHHHHHHHHHHHHh
Confidence 99984 2233445677899999999874
No 18
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=2.4e-37 Score=290.83 Aligned_cols=305 Identities=18% Similarity=0.238 Sum_probs=232.9
Q ss_pred CcEEEeCCCcceEEEEcCCCCCCeeccccceecCccccccCCCCCCeeeCcchhhc----cCcceeeccccCCcccCHHH
Q psy16631 10 QPVVIDNGSGVIKAGFAGDQVPKCCFPNYIGRPKHIRVMAGALEGDIFVGPKAEEH----RGLLSIHYPMEHGIITDWND 85 (376)
Q Consensus 10 ~~vViD~Gs~~~k~G~a~~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~p~~~g~i~d~~~ 85 (376)
..|+||+||.++|+|+++++. .+.+||+++.+++. ...+++|+++... +....+.+|+++|.+.||+.
T Consensus 6 ~~igIDlGt~~~~i~~~~~~~-~~~~ps~v~~~~~~-------~~~~~vG~~a~~~~~~~~~~~~~~~pi~~G~i~d~~~ 77 (334)
T PRK13927 6 NDLGIDLGTANTLVYVKGKGI-VLNEPSVVAIRTDT-------KKVLAVGEEAKQMLGRTPGNIVAIRPMKDGVIADFDV 77 (334)
T ss_pred ceeEEEcCcceEEEEECCCcE-EEecCCEEEEECCC-------CeEEEecHHHHHHhhcCCCCEEEEecCCCCeecCHHH
Confidence 369999999999999999876 56789999986541 2357899998554 35567889999999999999
Q ss_pred HHHHHHHhhcCccCCCCCCCC-cEEEEeCCCCChHhHHHHHHHhhcccCCCceecchhhhhhhhhcCC-----ceEEEEe
Q psy16631 86 MERIWQYVYSNDQLQTFSEEH-PVLLTEAPLNPRRNREKAAEIFFESFNVPALYVSMQAVLSLYATGR-----TTGVVLD 159 (376)
Q Consensus 86 ~~~~l~~~~~~~~l~~~~~~~-~vvl~~~~~~~~~~r~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVD 159 (376)
.+.+|++++.+ .++. +.++ .++++.|.. ....++++++.+|+.+|++.+.++++|+||++++|. ++++|||
T Consensus 78 ~~~ll~~~~~~-~~~~-~~~~~~~vi~vP~~-~~~~~r~~~~~a~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lvvD 154 (334)
T PRK13927 78 TEKMLKYFIKK-VHKN-FRPSPRVVICVPSG-ITEVERRAVRESALGAGAREVYLIEEPMAAAIGAGLPVTEPTGSMVVD 154 (334)
T ss_pred HHHHHHHHHHH-Hhhc-cCCCCcEEEEeCCC-CCHHHHHHHHHHHHHcCCCeeccCCChHHHHHHcCCcccCCCeEEEEE
Confidence 99999999975 4555 5555 567776654 555556678888999999999999999999999987 4679999
Q ss_pred cCCCceEEEEe-eCCeeccccceeecccHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHhcccccCCccccc-cCCCC
Q psy16631 160 SGDGVTHAVPI-YEGFAMPHSIMRNDIAGRDVTRYLKLLLRKEGVNFRTTAEFEIVRTIKEKACYLSSNPVKEE-TTDSE 237 (376)
Q Consensus 160 iG~~~t~i~pv-~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~-~~~~~ 237 (376)
+|+++|+++++ ++|....++ .++||++++++|.+++.++ +.+. .+.+.+|++|+++|++..+..... .....
T Consensus 155 iGggttdvs~v~~~~~~~~~~---~~lGG~~id~~l~~~l~~~-~~~~--~~~~~ae~iK~~~~~~~~~~~~~~~~~~~~ 228 (334)
T PRK13927 155 IGGGTTEVAVISLGGIVYSKS---VRVGGDKFDEAIINYVRRN-YNLL--IGERTAERIKIEIGSAYPGDEVLEMEVRGR 228 (334)
T ss_pred eCCCeEEEEEEecCCeEeeCC---cCChHHHHHHHHHHHHHHH-hCcC--cCHHHHHHHHHHhhccCCCCCCceEEEeCc
Confidence 99999999999 777665543 4799999999999988754 2221 345789999999998865321100 00000
Q ss_pred ceEEECCCCcEEEeccccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHHhhc-CeEeccCcccccCHHHHHHH
Q psy16631 238 KHTYVLPDGSSLDIGHARFRAPEVLFRPDLIGEESEGIHDVLYYAIQKSDLDLRKVLYQ-NIVLSGGSTLFKGFGDRLLA 316 (376)
Q Consensus 238 ~~~~~lpd~~~i~v~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~-nIvl~GG~s~i~Gl~~rl~~ 316 (376)
...+.+| ..+.++.+++ .|++|.|. .++.+.|.+++.+++.+.++.+++ +|+||||+|++||+.+||++
T Consensus 229 ~~~~~~~--~~~~i~~~~~--~e~i~~~~------~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~ 298 (334)
T PRK13927 229 DLVTGLP--KTITISSNEI--REALQEPL------SAIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSE 298 (334)
T ss_pred ccCCCCC--eEEEECHHHH--HHHHHHHH------HHHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHH
Confidence 0001122 1455555555 47887763 579999999999999998888887 59999999999999999999
Q ss_pred HHHhhCCCCceEEEeCCCCCccchhhhHHHhhc
Q psy16631 317 EIRKNAPKDLKIRISAPQERLYSTWIGGSILAS 349 (376)
Q Consensus 317 eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~ 349 (376)
++. .++....+|..++-.||++++.
T Consensus 299 ~~~--------~~v~~~~~P~~ava~Ga~~~~~ 323 (334)
T PRK13927 299 ETG--------LPVHVAEDPLTCVARGTGKALE 323 (334)
T ss_pred HHC--------CCcEecCCHHHHHHHHHHHHHh
Confidence 983 2334445678899999999874
No 19
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=100.00 E-value=1.1e-35 Score=279.06 Aligned_cols=308 Identities=18% Similarity=0.209 Sum_probs=235.3
Q ss_pred EEEeCCCcceEEEEcCCCCCCeeccccceecCccccccCCCCCCeeeCcchhhc----cCcceeeccccCCcccCHHHHH
Q psy16631 12 VVIDNGSGVIKAGFAGDQVPKCCFPNYIGRPKHIRVMAGALEGDIFVGPKAEEH----RGLLSIHYPMEHGIITDWNDME 87 (376)
Q Consensus 12 vViD~Gs~~~k~G~a~~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~p~~~g~i~d~~~~~ 87 (376)
+-||+||.++++-..++ .-....||+++..++.+ |..+..+++|++|... +....+.+|+++|.+.||+..+
T Consensus 5 ~giDlGt~~s~i~~~~~-~~~~~~psvv~~~~~~~---~~~~~~~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~d~~~~~ 80 (333)
T TIGR00904 5 IGIDLGTANTLVYVKGR-GIVLNEPSVVAIRTDRD---AKTKSILAVGHEAKEMLGKTPGNIVAIRPMKDGVIADFEVTE 80 (333)
T ss_pred eEEecCcceEEEEECCC-CEEEecCCEEEEecCCC---CCCCeEEEEhHHHHHhhhcCCCCEEEEecCCCCEEEcHHHHH
Confidence 89999999999966543 23455688888754321 1123457899998654 4567789999999999999999
Q ss_pred HHHHHhhcCccCCCCCC-CCcEEEEeCCCCChHhHHHHHHHhhcccCCCceecchhhhhhhhhcCC-----ceEEEEecC
Q psy16631 88 RIWQYVYSNDQLQTFSE-EHPVLLTEAPLNPRRNREKAAEIFFESFNVPALYVSMQAVLSLYATGR-----TTGVVLDSG 161 (376)
Q Consensus 88 ~~l~~~~~~~~l~~~~~-~~~vvl~~~~~~~~~~r~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG 161 (376)
.+|+|++.+ .+..... ..++++++|+.++..+|+. ++.+|+.+|++.++++++|+||+|++|. .+++|||+|
T Consensus 81 ~~~~~~l~~-~~~~~~~~~~~~vitvP~~~~~~~r~~-~~~~~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lVvDiG 158 (333)
T TIGR00904 81 KMIKYFIKQ-VHSRKSFFKPRIVICVPSGITPVERRA-VKESALSAGAREVYLIEEPMAAAIGAGLPVEEPTGSMVVDIG 158 (333)
T ss_pred HHHHHHHHH-HhcccccCCCcEEEEeCCCCCHHHHHH-HHHHHHHcCCCeEEEecCHHHHHHhcCCcccCCceEEEEEcC
Confidence 999999975 3443222 2369999999999998887 6668899999999999999999999987 688999999
Q ss_pred CCceEEEEe-eCCeeccccceeecccHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHhcccccCCccccc--cCCCCc
Q psy16631 162 DGVTHAVPI-YEGFAMPHSIMRNDIAGRDVTRYLKLLLRKEGVNFRTTAEFEIVRTIKEKACYLSSNPVKEE--TTDSEK 238 (376)
Q Consensus 162 ~~~t~i~pv-~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~--~~~~~~ 238 (376)
+++|+++++ ++|...... .++||+++++.|.+++.++ +.. ..+.+.+|++|+++|++..+..++. ......
T Consensus 159 ~gttdvs~v~~~~~~~~~~---~~lGG~did~~l~~~l~~~-~~~--~~~~~~ae~lK~~l~~~~~~~~~~~~~~~~~~~ 232 (333)
T TIGR00904 159 GGTTEVAVISLGGIVVSRS---IRVGGDEFDEAIINYIRRT-YNL--LIGEQTAERIKIEIGSAYPLNDEPRKMEVRGRD 232 (333)
T ss_pred CCeEEEEEEEeCCEEecCC---ccchHHHHHHHHHHHHHHH-hcc--cCCHHHHHHHHHHHhccccccccccceeecCcc
Confidence 999999999 777666543 4799999999999988754 222 2345789999999998765422110 000111
Q ss_pred eEEECCCCcEEEeccccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHHhhc-CeEeccCcccccCHHHHHHHH
Q psy16631 239 HTYVLPDGSSLDIGHARFRAPEVLFRPDLIGEESEGIHDVLYYAIQKSDLDLRKVLYQ-NIVLSGGSTLFKGFGDRLLAE 317 (376)
Q Consensus 239 ~~~~lpd~~~i~v~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~-nIvl~GG~s~i~Gl~~rl~~e 317 (376)
..+.+|++. .++. ..+.|++|+|. .++.+.|.+++.+++.+.+..+++ +|+||||+|++||+.+||+++
T Consensus 233 ~~~~~~~~~--~i~~--~~~~e~i~~~~------~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~ 302 (333)
T TIGR00904 233 LVTGLPRTI--EITS--VEVREALQEPV------NQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKE 302 (333)
T ss_pred ccCCCCeEE--EECH--HHHHHHHHHHH------HHHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHH
Confidence 223455543 3332 35678888873 478999999999999999999996 799999999999999999999
Q ss_pred HHhhCCCCceEEEeCCCCCccchhhhHHHhhc
Q psy16631 318 IRKNAPKDLKIRISAPQERLYSTWIGGSILAS 349 (376)
Q Consensus 318 L~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~ 349 (376)
+. +.+....+|..++-.||++++.
T Consensus 303 ~~--------~~v~~~~~P~~~va~Ga~~~~~ 326 (333)
T TIGR00904 303 TG--------LPVIVADDPLLCVAKGTGKALE 326 (333)
T ss_pred HC--------CCceecCChHHHHHHHHHHHHh
Confidence 93 2345556788899999999864
No 20
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=100.00 E-value=5.2e-35 Score=274.05 Aligned_cols=302 Identities=17% Similarity=0.247 Sum_probs=231.4
Q ss_pred cEEEeCCCcceEEEEcCCCCCCeeccccceecCccccccCCCCCCeeeCcchhhc----cCcceeeccccCCcccCHHHH
Q psy16631 11 PVVIDNGSGVIKAGFAGDQVPKCCFPNYIGRPKHIRVMAGALEGDIFVGPKAEEH----RGLLSIHYPMEHGIITDWNDM 86 (376)
Q Consensus 11 ~vViD~Gs~~~k~G~a~~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~p~~~g~i~d~~~~ 86 (376)
.+-||+||.++++-..++.. ....||+++...+ ...-+.+|++|... +....+.+|+++|.|.|||..
T Consensus 6 ~~giDlGt~~~~i~~~~~~~-~~~~ps~va~~~~-------~~~~~~vG~~A~~~~~~~p~~~~~~~pi~~G~I~d~d~~ 77 (335)
T PRK13929 6 EIGIDLGTANILVYSKNKGI-ILNEPSVVAVDTE-------TKAVLAIGTEAKNMIGKTPGKIVAVRPMKDGVIADYDMT 77 (335)
T ss_pred eEEEEcccccEEEEECCCcE-EecCCcEEEEECC-------CCeEEEeCHHHHHhhhcCCCcEEEEecCCCCccCCHHHH
Confidence 59999999999984434322 2346888876533 12346899998554 356677899999999999999
Q ss_pred HHHHHHhhcC--ccCCCCCCCCcEEEEeCCCCChHhHHHHHHHhhcccCCCceecchhhhhhhhhcC-----CceEEEEe
Q psy16631 87 ERIWQYVYSN--DQLQTFSEEHPVLLTEAPLNPRRNREKAAEIFFESFNVPALYVSMQAVLSLYATG-----RTTGVVLD 159 (376)
Q Consensus 87 ~~~l~~~~~~--~~l~~~~~~~~vvl~~~~~~~~~~r~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g-----~~tglVVD 159 (376)
+.+|++++.+ ..++..+..+++++++|+.++..+|+.+.+ +++.+|++.+.++++|+||++++| ..+++|||
T Consensus 78 ~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~~-a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lvvD 156 (335)
T PRK13929 78 TDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISD-AVKNCGAKNVHLIEEPVAAAIGADLPVDEPVANVVVD 156 (335)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHHH-HHHHcCCCeeEeecCHHHHHHhcCCCcCCCceEEEEE
Confidence 9999999963 136666666799999999999999999999 889999999999999999999997 46899999
Q ss_pred cCCCceEEEEe-eCCeeccccceeecccHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHhcccccCCccccc-cCCCC
Q psy16631 160 SGDGVTHAVPI-YEGFAMPHSIMRNDIAGRDVTRYLKLLLRKEGVNFRTTAEFEIVRTIKEKACYLSSNPVKEE-TTDSE 237 (376)
Q Consensus 160 iG~~~t~i~pv-~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~-~~~~~ 237 (376)
+|+++|+++++ ++|..... ..++||++++++|.+.+..+ +++. .+.+.+|++|+++|++..+..++. .....
T Consensus 157 iG~gtt~v~vi~~~~~~~~~---~~~~GG~~id~~l~~~l~~~-~~~~--~~~~~AE~iK~~l~~~~~~~~~~~~~v~g~ 230 (335)
T PRK13929 157 IGGGTTEVAIISFGGVVSCH---SIRIGGDQLDEDIVSFVRKK-YNLL--IGERTAEQVKMEIGYALIEHEPETMEVRGR 230 (335)
T ss_pred eCCCeEEEEEEEeCCEEEec---CcCCHHHHHHHHHHHHHHHH-hCcC--cCHHHHHHHHHHHcCCCCCCCCceEEEeCC
Confidence 99999999999 55544333 36899999999999998763 3332 245789999999999865432110 00000
Q ss_pred ceEEECCCCcEEEecccccc--ccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHHhhc-CeEeccCcccccCHHHHH
Q psy16631 238 KHTYVLPDGSSLDIGHARFR--APEVLFRPDLIGEESEGIHDVLYYAIQKSDLDLRKVLYQ-NIVLSGGSTLFKGFGDRL 314 (376)
Q Consensus 238 ~~~~~lpd~~~i~v~~~r~~--~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~-nIvl~GG~s~i~Gl~~rl 314 (376)
...+.+| ..+.++.+++. ++|.+|+ +.+.|.+++.+|+++.+..+++ +|+||||+|++|||.+||
T Consensus 231 ~~~~~~p--~~i~i~~~~~~~~i~~~l~~----------i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l 298 (335)
T PRK13929 231 DLVTGLP--KTITLESKEIQGAMRESLLH----------ILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWL 298 (335)
T ss_pred ccCCCCC--eEEEEcHHHHHHHHHHHHHH----------HHHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHH
Confidence 0111222 46677766555 5777764 8999999999999999999998 699999999999999999
Q ss_pred HHHHHhhCCCCceEEEeCCCCCccchhhhHHHh
Q psy16631 315 LAEIRKNAPKDLKIRISAPQERLYSTWIGGSIL 347 (376)
Q Consensus 315 ~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~ 347 (376)
++++.. + +....+|..++-.||..+
T Consensus 299 ~~~~~~------~--v~~~~~P~~~Va~Ga~~~ 323 (335)
T PRK13929 299 SEEIVV------P--VHVAANPLESVAIGTGRS 323 (335)
T ss_pred HHHHCC------C--ceeCCCHHHHHHHHHHHH
Confidence 999942 2 334567888999997766
No 21
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=100.00 E-value=4.4e-33 Score=255.54 Aligned_cols=305 Identities=18% Similarity=0.224 Sum_probs=219.9
Q ss_pred CcEEEeCCCcceEEEEcCCCCCCeeccccceecCccccccCCCCCCeeeCcchhh----ccCcceeeccccCCcccCHHH
Q psy16631 10 QPVVIDNGSGVIKAGFAGDQVPKCCFPNYIGRPKHIRVMAGALEGDIFVGPKAEE----HRGLLSIHYPMEHGIITDWND 85 (376)
Q Consensus 10 ~~vViD~Gs~~~k~G~a~~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~p~~~g~i~d~~~ 85 (376)
+-+-||+||.+|++-..++ .-.+..||+++.... ....+.+|++|.. .+....+.+|+++|+|.|++.
T Consensus 2 ~~igIDLGT~~t~i~~~~~-Giv~~epSvVA~~~~-------~~~i~avG~~A~~m~gktp~~i~~~~Pl~~GvI~D~~~ 73 (326)
T PF06723_consen 2 KDIGIDLGTSNTRIYVKGK-GIVLNEPSVVAYDKD-------TGKILAVGDEAKAMLGKTPDNIEVVRPLKDGVIADYEA 73 (326)
T ss_dssp SEEEEEE-SSEEEEEETTT-EEEEEEES-EEEETT-------T--EEEESHHHHTTTTS-GTTEEEE-SEETTEESSHHH
T ss_pred CceEEecCcccEEEEECCC-CEEEecCcEEEEECC-------CCeEEEEhHHHHHHhhcCCCccEEEccccCCcccCHHH
Confidence 3588999999999954543 344556999987655 2456779999854 456778899999999999999
Q ss_pred HHHHHHHhhcCccCCC-CCCCCcEEEEeCCCCChHhHHHHHHHhhcccCCCceecchhhhhhhhhcCC-----ceEEEEe
Q psy16631 86 MERIWQYVYSNDQLQT-FSEEHPVLLTEAPLNPRRNREKAAEIFFESFNVPALYVSMQAVLSLYATGR-----TTGVVLD 159 (376)
Q Consensus 86 ~~~~l~~~~~~~~l~~-~~~~~~vvl~~~~~~~~~~r~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVD 159 (376)
.+.++++++.+ .... ......++++.|.-.+..+|+.+.+.+- ..|+..|+++++|+||++|+|. ...+|||
T Consensus 74 ~~~~l~~~l~k-~~~~~~~~~p~vvi~vP~~~T~verrA~~~a~~-~aGa~~V~li~ep~AaAiGaGl~i~~~~g~miVD 151 (326)
T PF06723_consen 74 AEEMLRYFLKK-ALGRRSFFRPRVVICVPSGITEVERRALIDAAR-QAGARKVYLIEEPIAAAIGAGLDIFEPRGSMIVD 151 (326)
T ss_dssp HHHHHHHHHHH-HHTSS-SS--EEEEEE-SS--HHHHHHHHHHHH-HTT-SEEEEEEHHHHHHHHTT--TTSSS-EEEEE
T ss_pred HHHHHHHHHHH-hccCCCCCCCeEEEEeCCCCCHHHHHHHHHHHH-HcCCCEEEEecchHHHHhcCCCCCCCCCceEEEE
Confidence 99999999975 3443 3356679999999999999999999885 5999999999999999999985 4679999
Q ss_pred cCCCceEEEEeeCCeeccccceeecccHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHhcccccCCccccccCCCCce
Q psy16631 160 SGDGVTHAVPIYEGFAMPHSIMRNDIAGRDVTRYLKLLLRKEGVNFRTTAEFEIVRTIKEKACYLSSNPVKEETTDSEKH 239 (376)
Q Consensus 160 iG~~~t~i~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~~~~ 239 (376)
||+++|.|+.+..|.++.+ +.+++||+++++.+.+.+++++ ++ .....++|++|++++++.....+. .....
T Consensus 152 IG~GtTdiavislggiv~s--~si~~gG~~~DeaI~~~ir~~y-~l--~Ig~~tAE~iK~~~g~~~~~~~~~---~~~v~ 223 (326)
T PF06723_consen 152 IGGGTTDIAVISLGGIVAS--RSIRIGGDDIDEAIIRYIREKY-NL--LIGERTAEKIKIEIGSASPPEEEE---SMEVR 223 (326)
T ss_dssp E-SS-EEEEEEETTEEEEE--EEES-SHHHHHHHHHHHHHHHH-SE--E--HHHHHHHHHHH-BSS--HHHH---EEEEE
T ss_pred ECCCeEEEEEEECCCEEEE--EEEEecCcchhHHHHHHHHHhh-Cc--ccCHHHHHHHHHhcceeeccCCCc---eEEEE
Confidence 9999999999999988875 4679999999999999999873 33 457799999999999886532221 11122
Q ss_pred EEECCCCc--EEEecc-ccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHHhhc-CeEeccCcccccCHHHHHH
Q psy16631 240 TYVLPDGS--SLDIGH-ARFRAPEVLFRPDLIGEESEGIHDVLYYAIQKSDLDLRKVLYQ-NIVLSGGSTLFKGFGDRLL 315 (376)
Q Consensus 240 ~~~lpd~~--~i~v~~-~r~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~-nIvl~GG~s~i~Gl~~rl~ 315 (376)
...+-+|. .+.++. +-..+.+..+ ..+.+.|.+++.++|+++..++++ +|+||||+|+++||.++|+
T Consensus 224 Grd~~tGlP~~~~i~~~ev~~ai~~~~---------~~I~~~i~~~Le~~pPel~~DI~~~GI~LtGGga~l~Gl~~~i~ 294 (326)
T PF06723_consen 224 GRDLITGLPKSIEITSSEVREAIEPPV---------DQIVEAIKEVLEKTPPELAADILENGIVLTGGGALLRGLDEYIS 294 (326)
T ss_dssp EEETTTTCEEEEEEEHHHHHHHHHHHH---------HHHHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHH
T ss_pred CccccCCCcEEEEEcHHHHHHHHHHHH---------HHHHHHHHHHHHhCCHHHHHHHHHCCEEEEChhhhhccHHHHHH
Confidence 23344553 344442 3333333332 359999999999999999998885 5999999999999999999
Q ss_pred HHHHhhCCCCceEEEeCCCCCccchhhhHHHhhc
Q psy16631 316 AEIRKNAPKDLKIRISAPQERLYSTWIGGSILAS 349 (376)
Q Consensus 316 ~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~ 349 (376)
+++ .+.|...++|..++-.|+..+..
T Consensus 295 ~~~--------~~pV~va~~P~~~va~G~~~~l~ 320 (326)
T PF06723_consen 295 EET--------GVPVRVADDPLTAVARGAGKLLE 320 (326)
T ss_dssp HHH--------SS-EEE-SSTTTHHHHHHHHTTC
T ss_pred HHH--------CCCEEEcCCHHHHHHHHHHHHHh
Confidence 999 35667777899999999877653
No 22
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=99.97 E-value=3.9e-31 Score=248.54 Aligned_cols=305 Identities=17% Similarity=0.246 Sum_probs=223.7
Q ss_pred cEEEeCCCcceEEEEcCCCCCCeeccccceecCccccccCCCCCCeeeCcchhhc----cCcceeeccccCCcccCHHHH
Q psy16631 11 PVVIDNGSGVIKAGFAGDQVPKCCFPNYIGRPKHIRVMAGALEGDIFVGPKAEEH----RGLLSIHYPMEHGIITDWNDM 86 (376)
Q Consensus 11 ~vViD~Gs~~~k~G~a~~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~p~~~g~i~d~~~~ 86 (376)
.+-||+||.++++-..++. -.+..||+++...+ .+..+.+|++|... +....+.+|+++|.|.||+..
T Consensus 5 ~~gIDlGt~~~~i~~~~~~-~v~~~psvv~~~~~-------~~~i~~vG~~A~~~~~~~p~~~~~~~pi~~G~i~d~~~~ 76 (336)
T PRK13928 5 DIGIDLGTANVLVYVKGKG-IVLNEPSVVAIDKN-------TNKVLAVGEEARRMVGRTPGNIVAIRPLRDGVIADYDVT 76 (336)
T ss_pred eeEEEcccccEEEEECCCC-EEEccCCEEEEECC-------CCeEEEecHHHHHhhhcCCCCEEEEccCCCCeEecHHHH
Confidence 4899999999999766442 33345888776533 12345799988544 345667899999999999999
Q ss_pred HHHHHHhhcCccCCCC-CCCCc-EEEEeCCCCChHhHHHHHHHhhcccCCCceecchhhhhhhhhcCC-----ceEEEEe
Q psy16631 87 ERIWQYVYSNDQLQTF-SEEHP-VLLTEAPLNPRRNREKAAEIFFESFNVPALYVSMQAVLSLYATGR-----TTGVVLD 159 (376)
Q Consensus 87 ~~~l~~~~~~~~l~~~-~~~~~-vvl~~~~~~~~~~r~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVD 159 (376)
+.+|++++. ++... ...+| +++++|..++. .+++.++.+++.+|++.+.++++|+||++++|. ..++|||
T Consensus 77 ~~~l~~~~~--~~~~~~~~~~p~~vitvP~~~~~-~~r~~~~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lVvD 153 (336)
T PRK13928 77 EKMLKYFIN--KACGKRFFSKPRIMICIPTGITS-VEKRAVREAAEQAGAKKVYLIEEPLAAAIGAGLDISQPSGNMVVD 153 (336)
T ss_pred HHHHHHHHH--HHhccCCCCCCeEEEEeCCCCCH-HHHHHHHHHHHHcCCCceEecccHHHHHHHcCCcccCCCeEEEEE
Confidence 999999994 34333 34566 88888666554 566677777899999999999999999999987 6789999
Q ss_pred cCCCceEEEEeeCCeeccccceeecccHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHhcccccCCccccc-cCCCCc
Q psy16631 160 SGDGVTHAVPIYEGFAMPHSIMRNDIAGRDVTRYLKLLLRKEGVNFRTTAEFEIVRTIKEKACYLSSNPVKEE-TTDSEK 238 (376)
Q Consensus 160 iG~~~t~i~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~-~~~~~~ 238 (376)
+|+++|+|+++..|.++.+. ..++||+++++.|.+.+..+ +.+. .....+|++|++++....+..++. ......
T Consensus 154 iGggttdvsvv~~g~~~~~~--~~~lGG~did~~i~~~l~~~-~~~~--~~~~~ae~lK~~~~~~~~~~~~~~~~v~g~~ 228 (336)
T PRK13928 154 IGGGTTDIAVLSLGGIVTSS--SIKVAGDKFDEAIIRYIRKK-YKLL--IGERTAEEIKIKIGTAFPGAREEEMEIRGRD 228 (336)
T ss_pred eCCCeEEEEEEEeCCEEEeC--CcCCHHHHHHHHHHHHHHHH-hchh--cCHHHHHHHHHHhcccccccCCcEEEEeccc
Confidence 99999999999999777654 67999999999999998754 2221 234679999999987754311100 000000
Q ss_pred eEEECCCCcEEEeccccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHHhhc-CeEeccCcccccCHHHHHHHH
Q psy16631 239 HTYVLPDGSSLDIGHARFRAPEVLFRPDLIGEESEGIHDVLYYAIQKSDLDLRKVLYQ-NIVLSGGSTLFKGFGDRLLAE 317 (376)
Q Consensus 239 ~~~~lpd~~~i~v~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~-nIvl~GG~s~i~Gl~~rl~~e 317 (376)
....+|. .+.++.+++. |+++.+- ..+.+.|.+++.+++.+++...++ +|+||||+|++||+.++|+++
T Consensus 229 ~~~~~~~--~~~i~~~~~~--eii~~~~------~~i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~ 298 (336)
T PRK13928 229 LVTGLPK--TITVTSEEIR--EALKEPV------SAIVQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEE 298 (336)
T ss_pred ccCCCce--EEEECHHHHH--HHHHHHH------HHHHHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHH
Confidence 0011121 2444444333 5555432 468889999999999888888887 799999999999999999999
Q ss_pred HHhhCCCCceEEEeCCCCCccchhhhHHHhhc
Q psy16631 318 IRKNAPKDLKIRISAPQERLYSTWIGGSILAS 349 (376)
Q Consensus 318 L~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~ 349 (376)
+.. + +....+|..++-.||++++.
T Consensus 299 ~~~------~--v~~~~~P~~ava~Gaa~~~~ 322 (336)
T PRK13928 299 TKV------P--VYIAEDPISCVALGTGKMLE 322 (336)
T ss_pred HCC------C--ceecCCHHHHHHHHHHHHHh
Confidence 942 2 33445788899999999864
No 23
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.95 E-value=8.4e-27 Score=206.31 Aligned_cols=308 Identities=20% Similarity=0.238 Sum_probs=231.0
Q ss_pred CCcEEEeCCCcceEEEEcCCCCCCeeccccceecCccccccCCCCCCeeeCcchh----hccCcceeeccccCCcccCHH
Q psy16631 9 NQPVVIDNGSGVIKAGFAGDQVPKCCFPNYIGRPKHIRVMAGALEGDIFVGPKAE----EHRGLLSIHYPMEHGIITDWN 84 (376)
Q Consensus 9 ~~~vViD~Gs~~~k~G~a~~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~~~~~~p~~~g~i~d~~ 84 (376)
.+.+-||+||.+|++-.-+. .=....||+++..+. +.....+.+|++|. +.+++....+|+++|+|.|++
T Consensus 6 s~diGIDLGTanTlV~~k~k-gIVl~ePSVVAi~~~-----~~~~~v~aVG~eAK~MlGrTP~ni~aiRPmkdGVIAd~~ 79 (342)
T COG1077 6 SNDIGIDLGTANTLVYVKGK-GIVLNEPSVVAIESE-----GKTKVVLAVGEEAKQMLGRTPGNIVAIRPMKDGVIADFE 79 (342)
T ss_pred cccceeeecccceEEEEcCc-eEEecCceEEEEeec-----CCCceEEEehHHHHHHhccCCCCceEEeecCCcEeecHH
Confidence 34899999999999965543 233455788877553 11335678999984 456777889999999999999
Q ss_pred HHHHHHHHhhcCccCCCC--CCCCcEEEEeCCCCChHhHHHHHHHhhcccCCCceecchhhhhhhhhcCC-----ceEEE
Q psy16631 85 DMERIWQYVYSNDQLQTF--SEEHPVLLTEAPLNPRRNREKAAEIFFESFNVPALYVSMQAVLSLYATGR-----TTGVV 157 (376)
Q Consensus 85 ~~~~~l~~~~~~~~l~~~--~~~~~vvl~~~~~~~~~~r~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglV 157 (376)
..+.+++|+.++ ..+-. ....+++++.|.-.+..+|+.+-+.+ +..|...|+++++|.+|++++|. +.++|
T Consensus 80 ~te~ml~~fik~-~~~~~~~~~~prI~i~vP~g~T~VErrAi~ea~-~~aGa~~V~lieEp~aAAIGaglpi~ep~G~mv 157 (342)
T COG1077 80 VTELMLKYFIKK-VHKNGSSFPKPRIVICVPSGITDVERRAIKEAA-ESAGAREVYLIEEPMAAAIGAGLPIMEPTGSMV 157 (342)
T ss_pred HHHHHHHHHHHH-hccCCCCCCCCcEEEEecCCccHHHHHHHHHHH-HhccCceEEEeccHHHHHhcCCCcccCCCCCEE
Confidence 999999999854 22222 34456999999999999999888887 55899999999999999999986 45899
Q ss_pred EecCCCceEEEEeeCCeeccccceeecccHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHhcccccCCccccccCCCC
Q psy16631 158 LDSGDGVTHAVPIYEGFAMPHSIMRNDIAGRDVTRYLKLLLRKEGVNFRTTAEFEIVRTIKEKACYLSSNPVKEETTDSE 237 (376)
Q Consensus 158 VDiG~~~t~i~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~~ 237 (376)
||||.++|.|+.+..|-++... ...+||+.+++.+...++++ +++ ......+|+||.+.+++......+. ....
T Consensus 158 vDIGgGTTevaVISlggiv~~~--Sirv~GD~~De~Ii~yvr~~-~nl--~IGe~taE~iK~eiG~a~~~~~~~~-~~~e 231 (342)
T COG1077 158 VDIGGGTTEVAVISLGGIVSSS--SVRVGGDKMDEAIIVYVRKK-YNL--LIGERTAEKIKIEIGSAYPEEEDEE-LEME 231 (342)
T ss_pred EEeCCCceeEEEEEecCEEEEe--eEEEecchhhHHHHHHHHHH-hCe--eecHHHHHHHHHHhcccccccCCcc-ceee
Confidence 9999999999999887777653 46799999999999999886 333 4556789999999999876322110 0011
Q ss_pred ceEEECCCC--cEEEeccc--cccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHHhhcC-eEeccCcccccCHHH
Q psy16631 238 KHTYVLPDG--SSLDIGHA--RFRAPEVLFRPDLIGEESEGIHDVLYYAIQKSDLDLRKVLYQN-IVLSGGSTLFKGFGD 312 (376)
Q Consensus 238 ~~~~~lpd~--~~i~v~~~--r~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~n-Ivl~GG~s~i~Gl~~ 312 (376)
.+.-.+-.| ..+.++.+ +-..-|.+ ..|.+.|...+.+||+++-.++..+ |++|||+|++.|+++
T Consensus 232 V~Grdl~~GlPk~i~i~s~ev~eal~~~v----------~~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~ 301 (342)
T COG1077 232 VRGRDLVTGLPKTITINSEEIAEALEEPL----------NGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDR 301 (342)
T ss_pred EEeeecccCCCeeEEEcHHHHHHHHHHHH----------HHHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchH
Confidence 111111111 23333332 33333444 4688999999999999999999988 999999999999999
Q ss_pred HHHHHHHhhCCCCceEEEeCCCCCccchhhhHHHhh
Q psy16631 313 RLLAEIRKNAPKDLKIRISAPQERLYSTWIGGSILA 348 (376)
Q Consensus 313 rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a 348 (376)
+|.+|. .+.|.-.++|-..+-+|+....
T Consensus 302 ~i~~et--------~~pv~ia~~pL~~Va~G~G~~l 329 (342)
T COG1077 302 LLSEET--------GVPVIIADDPLTCVAKGTGKAL 329 (342)
T ss_pred hHHhcc--------CCeEEECCChHHHHHhccchhh
Confidence 999988 4566667788888888866544
No 24
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.84 E-value=4.3e-20 Score=164.54 Aligned_cols=211 Identities=18% Similarity=0.215 Sum_probs=156.7
Q ss_pred eccccCCcccCHHHHHHHHHHhhcCccCCCCCCCCcEEEEeCCCCChHhHHHHHHHhhcccCCCceecchhhhhhhhhcC
Q psy16631 72 HYPMEHGIITDWNDMERIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNREKAAEIFFESFNVPALYVSMQAVLSLYATG 151 (376)
Q Consensus 72 ~~p~~~g~i~d~~~~~~~l~~~~~~~~l~~~~~~~~vvl~~~~~~~~~~r~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g 151 (376)
..|+.+|.|.|++..+.+++++...-.-.....-..++++.|..++..+|+.+.+.+ +..|++.+.++.+|+|++++++
T Consensus 28 ~~~~~~g~I~d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~a~-~~aGl~~~~li~ep~Aaa~~~~ 106 (239)
T TIGR02529 28 ADVVRDGIVVDFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVI-ESAGIEVLHVLDEPTAAAAVLQ 106 (239)
T ss_pred cccccCCeEEEhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHHHHH-HHcCCceEEEeehHHHHHHHhc
Confidence 468999999999999999999984200112223467999999999999998766554 6689999999999999999988
Q ss_pred CceEEEEecCCCceEEEEeeCCeeccccceeecccHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHhcccccCCcccc
Q psy16631 152 RTTGVVLDSGDGVTHAVPIYEGFAMPHSIMRNDIAGRDVTRYLKLLLRKEGVNFRTTAEFEIVRTIKEKACYLSSNPVKE 231 (376)
Q Consensus 152 ~~tglVVDiG~~~t~i~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~ 231 (376)
....+|+|+|+++|+++.+.+|.++.. ...++||+++++.+.+.+. .+.+.+|.+|.+.....
T Consensus 107 ~~~~~vvDiGggtt~i~i~~~G~i~~~--~~~~~GG~~it~~Ia~~~~---------i~~~~AE~~K~~~~~~~------ 169 (239)
T TIGR02529 107 IKNGAVVDVGGGTTGISILKKGKVIYS--ADEPTGGTHMSLVLAGAYG---------ISFEEAEEYKRGHKDEE------ 169 (239)
T ss_pred CCCcEEEEeCCCcEEEEEEECCeEEEE--EeeecchHHHHHHHHHHhC---------CCHHHHHHHHHhcCCHH------
Confidence 777899999999999999999988764 4678999999998876653 24478899987643100
Q ss_pred ccCCCCceEEECCCCcEEEeccccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHHhhcCeEeccCcccccCHH
Q psy16631 232 ETTDSEKHTYVLPDGSSLDIGHARFRAPEVLFRPDLIGEESEGIHDVLYYAIQKSDLDLRKVLYQNIVLSGGSTLFKGFG 311 (376)
Q Consensus 232 ~~~~~~~~~~~lpd~~~i~v~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~Gl~ 311 (376)
+.+...+.+. ..+.+.|.+++.+.++ ..|+||||+|++||+.
T Consensus 170 ----------------------~~~~~i~~~~---------~~i~~~i~~~l~~~~~-------~~v~LtGG~a~ipgl~ 211 (239)
T TIGR02529 170 ----------------------EIFPVVKPVY---------QKMASIVKRHIEGQGV-------KDLYLVGGACSFSGFA 211 (239)
T ss_pred ----------------------HHHHHHHHHH---------HHHHHHHHHHHHhCCC-------CEEEEECchhcchhHH
Confidence 0000001110 1244455555554433 4799999999999999
Q ss_pred HHHHHHHHhhCCCCceEEEeCCCCCccchhhhHHH
Q psy16631 312 DRLLAEIRKNAPKDLKIRISAPQERLYSTWIGGSI 346 (376)
Q Consensus 312 ~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi 346 (376)
++|++.+. +.+..+.+|.+++-.|+++
T Consensus 212 e~l~~~lg--------~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 212 DVFEKQLG--------LNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred HHHHHHhC--------CCcccCCCCCeehhheeec
Confidence 99999983 2344567899999999864
No 25
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.80 E-value=4.1e-18 Score=154.48 Aligned_cols=244 Identities=17% Similarity=0.169 Sum_probs=170.6
Q ss_pred CCCCcEEEeCCCcceEEEEcCCCCCCeeccccceecCccccccCCCCCCeeeCcchhhccCcceeeccccCCcccCHHHH
Q psy16631 7 IVNQPVVIDNGSGVIKAGFAGDQVPKCCFPNYIGRPKHIRVMAGALEGDIFVGPKAEEHRGLLSIHYPMEHGIITDWNDM 86 (376)
Q Consensus 7 ~~~~~vViD~Gs~~~k~G~a~~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~d~~~~ 86 (376)
..+-.++||+||..+|+=.+ +..+. .++ +++ ....++++|.+.|++..
T Consensus 22 ~~~~~~~iDiGSssi~~vv~-~~~~~-----~~~-----------------~~~---------~~~~~vr~G~i~di~~a 69 (267)
T PRK15080 22 ESPLKVGVDLGTANIVLAVL-DEDGQ-----PVA-----------------GAL---------EWADVVRDGIVVDFIGA 69 (267)
T ss_pred CCCEEEEEEccCceEEEEEE-cCCCC-----EEE-----------------EEe---------ccccccCCCEEeeHHHH
Confidence 35567999999999997554 22222 111 111 13568899999999998
Q ss_pred HHHHHHhhcC--ccCCCCCCCCcEEEEeCCCCChHhHHHHHHHhhcccCCCceecchhhhhhhhhcCCceEEEEecCCCc
Q psy16631 87 ERIWQYVYSN--DQLQTFSEEHPVLLTEAPLNPRRNREKAAEIFFESFNVPALYVSMQAVLSLYATGRTTGVVLDSGDGV 164 (376)
Q Consensus 87 ~~~l~~~~~~--~~l~~~~~~~~vvl~~~~~~~~~~r~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~~ 164 (376)
...++++... .+++.. -..++++.|...+..++..+. -+.+..|++...++.++.+++.+.+...++|||||+++
T Consensus 70 ~~~i~~~~~~ae~~~g~~--i~~v~~~vp~~~~~~~~~~~~-~~~~~aGl~~~~ii~e~~A~a~~~~~~~~~vvDIGggt 146 (267)
T PRK15080 70 VTIVRRLKATLEEKLGRE--LTHAATAIPPGTSEGDPRAII-NVVESAGLEVTHVLDEPTAAAAVLGIDNGAVVDIGGGT 146 (267)
T ss_pred HHHHHHHHHHHHHHhCCC--cCeEEEEeCCCCCchhHHHHH-HHHHHcCCceEEEechHHHHHHHhCCCCcEEEEeCCCc
Confidence 8888887742 123332 345677888888777777666 55688999999899999999998877778999999999
Q ss_pred eEEEEeeCCeeccccceeecccHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHhcccccCCccccccCCCCceEEECC
Q psy16631 165 THAVPIYEGFAMPHSIMRNDIAGRDVTRYLKLLLRKEGVNFRTTAEFEIVRTIKEKACYLSSNPVKEETTDSEKHTYVLP 244 (376)
Q Consensus 165 t~i~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~~~~~~~lp 244 (376)
|+++.+.+|.++.. ...++||+++++.+.+.+. .+.+.+|.+|.+...- +
T Consensus 147 t~i~v~~~g~~~~~--~~~~~GG~~it~~Ia~~l~---------i~~~eAE~lK~~~~~~-----~-------------- 196 (267)
T PRK15080 147 TGISILKDGKVVYS--ADEPTGGTHMSLVLAGAYG---------ISFEEAEQYKRDPKHH-----K-------------- 196 (267)
T ss_pred EEEEEEECCeEEEE--ecccCchHHHHHHHHHHhC---------CCHHHHHHHHhccCCH-----H--------------
Confidence 99999999988765 4679999999999987663 2347788888763200 0
Q ss_pred CCcEEEeccccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHHhhcCeEeccCcccccCHHHHHHHHHHhhCCC
Q psy16631 245 DGSSLDIGHARFRAPEVLFRPDLIGEESEGIHDVLYYAIQKSDLDLRKVLYQNIVLSGGSTLFKGFGDRLLAEIRKNAPK 324 (376)
Q Consensus 245 d~~~i~v~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~Gl~~rl~~eL~~~~~~ 324 (376)
+...+.+.++ ..+.+.|.+.+... -.+.|+||||+|++||+.+.+++.+..
T Consensus 197 ---------~~~~ii~~~~---------~~i~~~i~~~l~~~-------~~~~IvLtGG~s~lpgl~e~l~~~lg~---- 247 (267)
T PRK15080 197 ---------EIFPVVKPVV---------EKMASIVARHIEGQ-------DVEDIYLVGGTCCLPGFEEVFEKQTGL---- 247 (267)
T ss_pred ---------HHHHHHHHHH---------HHHHHHHHHHHhcC-------CCCEEEEECCcccchhHHHHHHHHhCC----
Confidence 0000000110 11333444444332 235899999999999999999999932
Q ss_pred CceEEEeCCCCCccchhhhHHHhh
Q psy16631 325 DLKIRISAPQERLYSTWIGGSILA 348 (376)
Q Consensus 325 ~~~i~v~~~~~~~~~~w~Gasi~a 348 (376)
+ +..+++|.+++-.|+.+++
T Consensus 248 --~--v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 248 --P--VHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred --C--cccCCCchHHHHHHHHhhC
Confidence 2 3346789999999998764
No 26
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=99.73 E-value=4.5e-17 Score=163.68 Aligned_cols=307 Identities=19% Similarity=0.195 Sum_probs=178.3
Q ss_pred cEEEeCCCcceEEEEcCCCCCCeeccccceecCccccccCCCCCCeeeCcchhhcc--Ccc----ee-------------
Q psy16631 11 PVVIDNGSGVIKAGFAGDQVPKCCFPNYIGRPKHIRVMAGALEGDIFVGPKAEEHR--GLL----SI------------- 71 (376)
Q Consensus 11 ~vViD~Gs~~~k~G~a~~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~----~~------------- 71 (376)
+|.||+||.++.+++..+..|..+ |+.-+.+..+....-..+...++|+.|.... .+. .+
T Consensus 1 ~iGIDlGTtns~va~~~~g~~~ii-~n~~g~~~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG~~~~d~~~ 79 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRSGVPEVL-PDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNTISSVKRLMGRSIEDIKT 79 (599)
T ss_pred CEEEEEccccEEEEEEECCEEEEE-ECCCCCcccCeEEEEeCCCCEEecHHHHHhhhhChhhhHHHHHHHhCCCccchhh
Confidence 478999999999999866655533 4333332222111111123567777662210 000 00
Q ss_pred --ecccc--------------CCcccCHHHHHHHHHHhhcC--ccCCCCCCCCcEEEEeCCCCChHhHHHHHHHhhcccC
Q psy16631 72 --HYPME--------------HGIITDWNDMERIWQYVYSN--DQLQTFSEEHPVLLTEAPLNPRRNREKAAEIFFESFN 133 (376)
Q Consensus 72 --~~p~~--------------~g~i~d~~~~~~~l~~~~~~--~~l~~~~~~~~vvl~~~~~~~~~~r~~~~~~lfe~~~ 133 (376)
.+|+. .+.+.-.+....+|+++... .+++. .-..++++.|++++..+|+.+.+.+ +..|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ei~a~iL~~lk~~a~~~lg~--~v~~~VItVPa~f~~~qR~a~~~Aa-~~AG 156 (599)
T TIGR01991 80 FSILPYRFVDGPGEMVRLRTVQGTVTPVEVSAEILKKLKQRAEESLGG--DLVGAVITVPAYFDDAQRQATKDAA-RLAG 156 (599)
T ss_pred cccCCEEEEEcCCCceEEEeCCCEEcHHHHHHHHHHHHHHHHHHHhCC--CcceEEEEECCCCCHHHHHHHHHHH-HHcC
Confidence 01221 12222233444455544321 12332 2357999999999999999877664 7799
Q ss_pred CCceecchhhhhhhhhcCC-----ceEEEEecCCCceEEEEee--CCee-ccccceeecccHHHHHHHHHHHHHhc-CCC
Q psy16631 134 VPALYVSMQAVLSLYATGR-----TTGVVLDSGDGVTHAVPIY--EGFA-MPHSIMRNDIAGRDVTRYLKLLLRKE-GVN 204 (376)
Q Consensus 134 ~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t~i~pv~--dG~~-~~~~~~~~~~GG~~l~~~l~~~l~~~-~~~ 204 (376)
++.+.++++|.||+++++. .+-+|+|+|+++++|+.+. +|.. +..+.....+||.++++.|.+++.++ +.+
T Consensus 157 l~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~l~~~~~~~ 236 (599)
T TIGR01991 157 LNVLRLLNEPTAAAVAYGLDKASEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWILKQLGIS 236 (599)
T ss_pred CCceEEecCHHHHHHHHhhccCCCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHHHHHHhhCCC
Confidence 9999999999999987753 4679999999999998874 4433 22222345899999999999888654 222
Q ss_pred Cccch-----HHHHHHHHHHhcccccCCccccccCCCCceEEECCCCcEE--EeccccccccccccCCCCCCCCCCCHHH
Q psy16631 205 FRTTA-----EFEIVRTIKEKACYLSSNPVKEETTDSEKHTYVLPDGSSL--DIGHARFRAPEVLFRPDLIGEESEGIHD 277 (376)
Q Consensus 205 ~~~~~-----~~~~~~~iK~~~~~~~~~~~~~~~~~~~~~~~~lpd~~~i--~v~~~r~~~~E~lF~p~~~~~~~~~l~~ 277 (376)
..... -...+|.+|+.++... .....+.. +|... .++.+.| |-++.|.+ ..+.+
T Consensus 237 ~~~~~~~~~~L~~~ae~aK~~LS~~~----------~~~i~i~~-~g~~~~~~itr~ef---e~l~~~ll-----~~i~~ 297 (599)
T TIGR01991 237 ADLNPEDQRLLLQAARAAKEALTDAE----------SVEVDFTL-DGKDFKGKLTRDEF---EALIQPLV-----QKTLS 297 (599)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCc----------eEEEEEEE-CCcEEEEEEeHHHH---HHHHHHHH-----HHHHH
Confidence 11111 1234556666553211 11111222 23322 3333221 11111100 12444
Q ss_pred HHHHHHHhCCHHHHHHhhcCeEeccCcccccCHHHHHHHHHHhhCCCCceEEEeCCCCCccchhhhHHHhhcc
Q psy16631 278 VLYYAIQKSDLDLRKVLYQNIVLSGGSTLFKGFGDRLLAEIRKNAPKDLKIRISAPQERLYSTWIGGSILASL 350 (376)
Q Consensus 278 ~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~Gl~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~l 350 (376)
.|.+++..... ...-...|+|+||+|.+|++.+++.+.+.. .+....+|..++-.||+++|..
T Consensus 298 ~i~~~L~~a~~--~~~~id~ViLvGGssriP~V~~~l~~~f~~--------~~~~~~npdeaVA~GAai~a~~ 360 (599)
T TIGR01991 298 ICRRALRDAGL--SVEEIKGVVLVGGSTRMPLVRRAVAELFGQ--------EPLTDIDPDQVVALGAAIQADL 360 (599)
T ss_pred HHHHHHHHcCC--ChhhCCEEEEECCcCCChHHHHHHHHHhCC--------CCCCCCCCcHHHHHHHHHHHHH
Confidence 55555544321 222357899999999999999999987632 1234557888999999999865
No 27
>CHL00094 dnaK heat shock protein 70
Probab=99.73 E-value=9.1e-17 Score=162.40 Aligned_cols=306 Identities=18% Similarity=0.190 Sum_probs=178.6
Q ss_pred CcEEEeCCCcceEEEEcCCCCCCeeccccceecCccccccCCCCCCeeeCcchhhc--cCc----ceee-----------
Q psy16631 10 QPVVIDNGSGVIKAGFAGDQVPKCCFPNYIGRPKHIRVMAGALEGDIFVGPKAEEH--RGL----LSIH----------- 72 (376)
Q Consensus 10 ~~vViD~Gs~~~k~G~a~~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~----~~~~----------- 72 (376)
.+|.||+||.++++++..+..|. ++++.-+.+..+....-..+...++|+.|... ..+ ..++
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~-ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~~~~ 81 (621)
T CHL00094 3 KVVGIDLGTTNSVVAVMEGGKPT-VIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPENTFYSVKRFIGRKFSEIS 81 (621)
T ss_pred ceEEEEeCcccEEEEEEECCEEE-EEECCCCCcccceEEEEcCCCCEEECHHHHHhHHhCccceehhhHHhcCCChHHHH
Confidence 58999999999999998766666 33544444333222111122356677655221 000 0000
Q ss_pred -----ccc----------------cCCcccCHHHHHHHHHHhhcC--ccCCCCCCCCcEEEEeCCCCChHhHHHHHHHhh
Q psy16631 73 -----YPM----------------EHGIITDWNDMERIWQYVYSN--DQLQTFSEEHPVLLTEAPLNPRRNREKAAEIFF 129 (376)
Q Consensus 73 -----~p~----------------~~g~i~d~~~~~~~l~~~~~~--~~l~~~~~~~~vvl~~~~~~~~~~r~~~~~~lf 129 (376)
+|+ ....+...+....+|+++... ..++ ..-..++++.|.+++..+|+.+.+.+
T Consensus 82 ~~~~~~~~~v~~~~~g~i~~~~~~~~~~~s~eei~a~iL~~l~~~ae~~lg--~~v~~~VItVPa~f~~~qR~a~~~Aa- 158 (621)
T CHL00094 82 EEAKQVSYKVKTDSNGNIKIECPALNKDFSPEEISAQVLRKLVEDASKYLG--ETVTQAVITVPAYFNDSQRQATKDAG- 158 (621)
T ss_pred hhhhcCCeEEEECCCCCEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhC--CCCCeEEEEECCCCCHHHHHHHHHHH-
Confidence 111 111122234444555555421 1122 12356888999999999888777765
Q ss_pred cccCCCceecchhhhhhhhhcCC-----ceEEEEecCCCceEEEEeeCC--ee-ccccceeecccHHHHHHHHHHHHHhc
Q psy16631 130 ESFNVPALYVSMQAVLSLYATGR-----TTGVVLDSGDGVTHAVPIYEG--FA-MPHSIMRNDIAGRDVTRYLKLLLRKE 201 (376)
Q Consensus 130 e~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t~i~pv~dG--~~-~~~~~~~~~~GG~~l~~~l~~~l~~~ 201 (376)
+..|+..+.++++|.||++++|. ..-+|+|+|+++++|+.+..+ .. +..+....++||+++++.|.+++..+
T Consensus 159 ~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~~~ 238 (621)
T CHL00094 159 KIAGLEVLRIINEPTAASLAYGLDKKNNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVNWLIKE 238 (621)
T ss_pred HHcCCceEEEeccHHHHHHHhccccCCCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHHHHHHHHHHH
Confidence 67899999999999999998764 467999999999999988543 21 12223356899999999998777543
Q ss_pred -----CCCCccc-----hHHHHHHHHHHhcccccCCccccccCCCCceEEECC------CC-cEE--Eecccccc-cccc
Q psy16631 202 -----GVNFRTT-----AEFEIVRTIKEKACYLSSNPVKEETTDSEKHTYVLP------DG-SSL--DIGHARFR-APEV 261 (376)
Q Consensus 202 -----~~~~~~~-----~~~~~~~~iK~~~~~~~~~~~~~~~~~~~~~~~~lp------d~-~~i--~v~~~r~~-~~E~ 261 (376)
+.++... .-...+|.+|+.++.... ..+.+| +| ..+ .+..++|. ..+.
T Consensus 239 ~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~~------------~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~ 306 (621)
T CHL00094 239 FKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQ------------TEINLPFITATQTGPKHIEKTLTRAKFEELCSD 306 (621)
T ss_pred HHHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCCc------------eEEEEeecccCCCCCeeEEEEEcHHHHHHHHHH
Confidence 2222211 112456778887653211 111111 01 122 22222210 1111
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHHhhcCeEeccCcccccCHHHHHHHHHHhhCCCCceEEEeCCCCCccchh
Q psy16631 262 LFRPDLIGEESEGIHDVLYYAIQKSDLDLRKVLYQNIVLSGGSTLFKGFGDRLLAEIRKNAPKDLKIRISAPQERLYSTW 341 (376)
Q Consensus 262 lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~Gl~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w 341 (376)
++ ..+...|.+++.+.. +...-...|+|+||+|++|++.+.|.+.+.. .+....+|+.++.
T Consensus 307 l~---------~~~~~~i~~~L~~a~--~~~~~i~~ViLvGGssriP~v~~~l~~~fg~--------~~~~~~~pdeava 367 (621)
T CHL00094 307 LI---------NRCRIPVENALKDAK--LDKSDIDEVVLVGGSTRIPAIQELVKKLLGK--------KPNQSVNPDEVVA 367 (621)
T ss_pred HH---------HHHHHHHHHHHHHcC--CChhhCcEEEEECCccCChHHHHHHHHHhCC--------CcCcCCCchhHHH
Confidence 11 123333444444332 2223357899999999999999999987732 2233446788999
Q ss_pred hhHHHhhcc
Q psy16631 342 IGGSILASL 350 (376)
Q Consensus 342 ~Gasi~a~l 350 (376)
.||+++|..
T Consensus 368 ~GAA~~aa~ 376 (621)
T CHL00094 368 IGAAVQAGV 376 (621)
T ss_pred hhhHHHHHH
Confidence 999999875
No 28
>PLN03184 chloroplast Hsp70; Provisional
Probab=99.72 E-value=2.9e-16 Score=159.41 Aligned_cols=312 Identities=16% Similarity=0.179 Sum_probs=180.4
Q ss_pred CCCcEEEeCCCcceEEEEcCCCCCCeeccccceecCccccccCCCCCCeeeCcchhhcc--Cc----cee----------
Q psy16631 8 VNQPVVIDNGSGVIKAGFAGDQVPKCCFPNYIGRPKHIRVMAGALEGDIFVGPKAEEHR--GL----LSI---------- 71 (376)
Q Consensus 8 ~~~~vViD~Gs~~~k~G~a~~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~----~~~---------- 71 (376)
.+.+|.||+||.++++++..+..|. ++|+..+.+..+....-..+...++|+.|.... .+ +.+
T Consensus 38 ~~~viGIDlGTt~s~va~~~~g~~~-ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d 116 (673)
T PLN03184 38 AEKVVGIDLGTTNSAVAAMEGGKPT-IVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSE 116 (673)
T ss_pred CCCEEEEEeCcCcEEEEEEECCeEE-EEECCCCCeecceEEEEcCCCCEEECHHHHHhhhhCchhhhHHHHHhhCCCcch
Confidence 3458999999999999998776666 335544443332221111123466776652210 00 000
Q ss_pred ------ecccc---------------CC-cccCHHHHHHHHHHhhcC--ccCCCCCCCCcEEEEeCCCCChHhHHHHHHH
Q psy16631 72 ------HYPME---------------HG-IITDWNDMERIWQYVYSN--DQLQTFSEEHPVLLTEAPLNPRRNREKAAEI 127 (376)
Q Consensus 72 ------~~p~~---------------~g-~i~d~~~~~~~l~~~~~~--~~l~~~~~~~~vvl~~~~~~~~~~r~~~~~~ 127 (376)
.+|+. .| .+.-.+....+|+++... .+++ ..-..++|+.|.+++..+|+.+.+.
T Consensus 117 ~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~speei~a~iL~~lk~~ae~~lg--~~v~~~VITVPa~f~~~qR~a~~~A 194 (673)
T PLN03184 117 VDEESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLN--DKVTKAVITVPAYFNDSQRTATKDA 194 (673)
T ss_pred hhhhhhcCCeEEEecCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhC--CCCCeEEEEECCCCCHHHHHHHHHH
Confidence 01111 11 122234445556555421 1232 2235799999999999999877665
Q ss_pred hhcccCCCceecchhhhhhhhhcCC-----ceEEEEecCCCceEEEEee--CCee-ccccceeecccHHHHHHHHHHHHH
Q psy16631 128 FFESFNVPALYVSMQAVLSLYATGR-----TTGVVLDSGDGVTHAVPIY--EGFA-MPHSIMRNDIAGRDVTRYLKLLLR 199 (376)
Q Consensus 128 lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t~i~pv~--dG~~-~~~~~~~~~~GG~~l~~~l~~~l~ 199 (376)
. +..|++.+.++++|.||++++|. ..-+|+|+|+++++|+.+. +|.. +..+.....+||.++++.|.+++.
T Consensus 195 a-~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~~L~~~~~ 273 (673)
T PLN03184 195 G-RIAGLEVLRIINEPTAASLAYGFEKKSNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLA 273 (673)
T ss_pred H-HHCCCCeEEEeCcHHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHHHHHHHHH
Confidence 4 77899999999999999988764 4679999999999998874 3322 122223468999999999988775
Q ss_pred hc-----CCCCccch-----HHHHHHHHHHhcccccCCccccccCCCCceEEE--CCCC-cEE--Eeccccc-ccccccc
Q psy16631 200 KE-----GVNFRTTA-----EFEIVRTIKEKACYLSSNPVKEETTDSEKHTYV--LPDG-SSL--DIGHARF-RAPEVLF 263 (376)
Q Consensus 200 ~~-----~~~~~~~~-----~~~~~~~iK~~~~~~~~~~~~~~~~~~~~~~~~--lpd~-~~i--~v~~~r~-~~~E~lF 263 (376)
.+ +.++.... -...+|++|+.++..... .....+. ..+| ..+ .++.+.| ...+.++
T Consensus 274 ~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~--------~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~ 345 (673)
T PLN03184 274 SNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQT--------SISLPFITATADGPKHIDTTLTRAKFEELCSDLL 345 (673)
T ss_pred HHHHhhcCCCcccCHHHHHHHHHHHHHHHHhcCCCCcc--------eEEEEeeeccCCCCceEEEEECHHHHHHHHHHHH
Confidence 43 22221111 134567777776532210 0000010 0111 222 2333221 1111111
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhCCHHHHHHhhcCeEeccCcccccCHHHHHHHHHHhhCCCCceEEEeCCCCCccchhhh
Q psy16631 264 RPDLIGEESEGIHDVLYYAIQKSDLDLRKVLYQNIVLSGGSTLFKGFGDRLLAEIRKNAPKDLKIRISAPQERLYSTWIG 343 (376)
Q Consensus 264 ~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~Gl~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~G 343 (376)
..+.+.|.+++.....+ ..-...|+|+||+|.+|.+.++|.+.+.. .+....+|..++-.|
T Consensus 346 ---------~r~~~~i~~~L~~a~~~--~~dId~ViLvGGssriP~V~~~i~~~fg~--------~~~~~~npdeaVA~G 406 (673)
T PLN03184 346 ---------DRCKTPVENALRDAKLS--FKDIDEVILVGGSTRIPAVQELVKKLTGK--------DPNVTVNPDEVVALG 406 (673)
T ss_pred ---------HHHHHHHHHHHHHcCCC--hhHccEEEEECCccccHHHHHHHHHHhCC--------CcccccCcchHHHHH
Confidence 12444455555444322 12247899999999999999999987732 122334677899999
Q ss_pred HHHhhcc
Q psy16631 344 GSILASL 350 (376)
Q Consensus 344 asi~a~l 350 (376)
|++.|..
T Consensus 407 AAi~aa~ 413 (673)
T PLN03184 407 AAVQAGV 413 (673)
T ss_pred HHHHHHH
Confidence 9999864
No 29
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=99.70 E-value=2.9e-16 Score=159.39 Aligned_cols=218 Identities=16% Similarity=0.177 Sum_probs=140.4
Q ss_pred CCcEEEEeCCCCChHhHHHHHHHhhcccCCCceecchhhhhhhhhcCC-----ceEEEEecCCCceEEEEee--CCeec-
Q psy16631 105 EHPVLLTEAPLNPRRNREKAAEIFFESFNVPALYVSMQAVLSLYATGR-----TTGVVLDSGDGVTHAVPIY--EGFAM- 176 (376)
Q Consensus 105 ~~~vvl~~~~~~~~~~r~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t~i~pv~--dG~~~- 176 (376)
-..+||+.|++++..+|+.+.+.+ +..|++.+.++++|.||++++|. ..-+|+|+|+++++|+.+. +|...
T Consensus 174 v~~~VITVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~g~~~v 252 (663)
T PTZ00400 174 VKQAVITVPAYFNDSQRQATKDAG-KIAGLDVLRIINEPTAAALAFGMDKNDGKTIAVYDLGGGTFDISILEILGGVFEV 252 (663)
T ss_pred CceEEEEECCCCCHHHHHHHHHHH-HHcCCceEEEeCchHHHHHHhccccCCCcEEEEEeCCCCeEEEEEEEecCCeeEE
Confidence 357999999999999998776654 77899999999999999998875 4679999999999998874 56442
Q ss_pred cccceeecccHHHHHHHHHHHHHhc-----CCCCccch-----HHHHHHHHHHhcccccCCccccccCCCCceEEECCC-
Q psy16631 177 PHSIMRNDIAGRDVTRYLKLLLRKE-----GVNFRTTA-----EFEIVRTIKEKACYLSSNPVKEETTDSEKHTYVLPD- 245 (376)
Q Consensus 177 ~~~~~~~~~GG~~l~~~l~~~l~~~-----~~~~~~~~-----~~~~~~~iK~~~~~~~~~~~~~~~~~~~~~~~~lpd- 245 (376)
..+.....+||.++++.|.+++..+ +.++.... -...+|.+|+.++.-... .....+...|
T Consensus 253 ~a~~gd~~LGG~d~D~~l~~~l~~~f~~~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~~~--------~i~i~~~~~d~ 324 (663)
T PTZ00400 253 KATNGNTSLGGEDFDQRILNYLIAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSKTQT--------EINLPFITADQ 324 (663)
T ss_pred EecccCCCcCHHHHHHHHHHHHHHHhhhhcCCCcccCHHHHHHHHHHHHHHHHHcCCCCce--------EEEEEeeccCC
Confidence 2223356799999999998877653 22221110 124567777776432110 0000111111
Q ss_pred -C-c--EEEeccccc-cccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHHhhcCeEeccCcccccCHHHHHHHHHHh
Q psy16631 246 -G-S--SLDIGHARF-RAPEVLFRPDLIGEESEGIHDVLYYAIQKSDLDLRKVLYQNIVLSGGSTLFKGFGDRLLAEIRK 320 (376)
Q Consensus 246 -~-~--~i~v~~~r~-~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~Gl~~rl~~eL~~ 320 (376)
| . .+.++.+.| ...+.+| ..+.+.|.+++.+... ...-...|+|+||+|.+|++.++|.+.+..
T Consensus 325 ~g~~~~~~~itR~efe~l~~~l~---------~~~~~~i~~~L~~a~~--~~~~i~~ViLvGGssriP~v~~~l~~~f~~ 393 (663)
T PTZ00400 325 SGPKHLQIKLSRAKLEELTHDLL---------KKTIEPCEKCIKDAGV--KKDELNDVILVGGMTRMPKVSETVKKIFGK 393 (663)
T ss_pred CCceEEEEEECHHHHHHHHHHHH---------HHHHHHHHHHHHHcCC--CHHHCcEEEEECCccCChHHHHHHHHHhCC
Confidence 1 1 233333222 1112222 1244555566654422 223357899999999999999999987732
Q ss_pred hCCCCceEEEeCCCCCccchhhhHHHhhcc
Q psy16631 321 NAPKDLKIRISAPQERLYSTWIGGSILASL 350 (376)
Q Consensus 321 ~~~~~~~i~v~~~~~~~~~~w~Gasi~a~l 350 (376)
.+....+|+.++-.||+++|..
T Consensus 394 --------~~~~~~npdeaVA~GAAi~aa~ 415 (663)
T PTZ00400 394 --------EPSKGVNPDEAVAMGAAIQAGV 415 (663)
T ss_pred --------CcccCCCCccceeeccHHHHHh
Confidence 1233456888999999999864
No 30
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=99.69 E-value=8.6e-16 Score=153.61 Aligned_cols=297 Identities=14% Similarity=0.155 Sum_probs=177.8
Q ss_pred CcEEEeCCCcceEEEEcCCCCCCeeccccceecCccccccCCCCCCeeeCcchh---------hccC-----c--cee-e
Q psy16631 10 QPVVIDNGSGVIKAGFAGDQVPKCCFPNYIGRPKHIRVMAGALEGDIFVGPKAE---------EHRG-----L--LSI-H 72 (376)
Q Consensus 10 ~~vViD~Gs~~~k~G~a~~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~g~~~~---------~~~~-----~--~~~-~ 72 (376)
.+|.||+||.+..+++..+..|. ++|+.-+....+....- ..+..++|+.+. .... . ... .
T Consensus 20 ~viGIDlGTT~S~va~~~~~~~~-ii~n~~g~~~tPS~V~f-~~~~~~vG~~Ati~~~KrliG~~~~~~~~~~~~~~~~k 97 (595)
T PRK01433 20 IAVGIDFGTTNSLIAIATNRKVK-VIKSIDDKELIPTTIDF-TSNNFTIGNNKGLRSIKRLFGKTLKEILNTPALFSLVK 97 (595)
T ss_pred eEEEEEcCcccEEEEEEeCCeeE-EEECCCCCeecCeEEEE-cCCCEEECchhhHHHHHHHhCCCchhhccchhhHhhhh
Confidence 47999999999999998655554 33544433333222110 123356775530 0000 0 000 0
Q ss_pred ---------cccc-CCcccC-HHHHHHHHHHhhcC--ccCCCCCCCCcEEEEeCCCCChHhHHHHHHHhhcccCCCceec
Q psy16631 73 ---------YPME-HGIITD-WNDMERIWQYVYSN--DQLQTFSEEHPVLLTEAPLNPRRNREKAAEIFFESFNVPALYV 139 (376)
Q Consensus 73 ---------~p~~-~g~i~d-~~~~~~~l~~~~~~--~~l~~~~~~~~vvl~~~~~~~~~~r~~~~~~lfe~~~~~~v~~ 139 (376)
.++. .|.... .+....+|+++-.. .+++ ..-..+|++.|++++..+|+.+.+. .+..|++.+.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~speei~a~iL~~lk~~ae~~lg--~~v~~aVITVPa~f~~~qR~a~~~A-a~~AGl~v~~l 174 (595)
T PRK01433 98 DYLDVNSSELKLNFANKQLRIPEIAAEIFIYLKNQAEEQLK--TNITKAVITVPAHFNDAARGEVMLA-AKIAGFEVLRL 174 (595)
T ss_pred heeecCCCeeEEEECCEEEcHHHHHHHHHHHHHHHHHHHhC--CCcceEEEEECCCCCHHHHHHHHHH-HHHcCCCEEEE
Confidence 0010 111112 23334444444321 1232 1235799999999999999877766 47799999999
Q ss_pred chhhhhhhhhcCC-----ceEEEEecCCCceEEEEee--CCee-ccccceeecccHHHHHHHHHHHHHhcCCCCcc-chH
Q psy16631 140 SMQAVLSLYATGR-----TTGVVLDSGDGVTHAVPIY--EGFA-MPHSIMRNDIAGRDVTRYLKLLLRKEGVNFRT-TAE 210 (376)
Q Consensus 140 ~~~~~~a~~~~g~-----~tglVVDiG~~~t~i~pv~--dG~~-~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~-~~~ 210 (376)
+++|.||++++|. .+-+|+|+|+++++|+.+. +|.. +..+.....+||.++++.|.+.+..+. +... ...
T Consensus 175 i~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSi~~~~~~~~~V~at~gd~~lGG~d~D~~l~~~~~~~~-~~~~~~~~ 253 (595)
T PRK01433 175 IAEPTAAAYAYGLNKNQKGCYLVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVVITQYLCNKF-DLPNSIDT 253 (595)
T ss_pred ecCcHHHHHHHhcccCCCCEEEEEECCCCcEEEEEEEEeCCeEEEEEEcCCcccChHHHHHHHHHHHHHhc-CCCCCHHH
Confidence 9999999998864 3569999999999998873 5533 222223457999999999998887652 2221 123
Q ss_pred HHHHHHHHHhcccccCCccccccCCCCceEEECCCCcEEEeccccc-cccccccCCCCCCCCCCCHHHHHHHHHHhCCHH
Q psy16631 211 FEIVRTIKEKACYLSSNPVKEETTDSEKHTYVLPDGSSLDIGHARF-RAPEVLFRPDLIGEESEGIHDVLYYAIQKSDLD 289 (376)
Q Consensus 211 ~~~~~~iK~~~~~~~~~~~~~~~~~~~~~~~~lpd~~~i~v~~~r~-~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~d 289 (376)
...++..|+.++... .+. ...+.++.+.| ...+.+|+ .+.+.|.+++....
T Consensus 254 ~~~~ekaK~~LS~~~--------------~~~---~~~~~itr~efe~l~~~l~~---------~~~~~i~~~L~~a~-- 305 (595)
T PRK01433 254 LQLAKKAKETLTYKD--------------SFN---NDNISINKQTLEQLILPLVE---------RTINIAQECLEQAG-- 305 (595)
T ss_pred HHHHHHHHHhcCCCc--------------ccc---cceEEEcHHHHHHHHHHHHH---------HHHHHHHHHHhhcC--
Confidence 345777787654211 011 11444444322 11222221 24445555555443
Q ss_pred HHHHhhcCeEeccCcccccCHHHHHHHHHHhhCCCCceEEEeCCCCCccchhhhHHHhhcc
Q psy16631 290 LRKVLYQNIVLSGGSTLFKGFGDRLLAEIRKNAPKDLKIRISAPQERLYSTWIGGSILASL 350 (376)
Q Consensus 290 ~r~~l~~nIvl~GG~s~i~Gl~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~l 350 (376)
..=...|+|+||+|.+|.+.++|.+.+. .++....+|..++-.||+++|..
T Consensus 306 --~~~Id~ViLvGGssriP~v~~~l~~~f~--------~~~~~~~npdeaVA~GAAi~a~~ 356 (595)
T PRK01433 306 --NPNIDGVILVGGATRIPLIKDELYKAFK--------VDILSDIDPDKAVVWGAALQAEN 356 (595)
T ss_pred --cccCcEEEEECCcccChhHHHHHHHHhC--------CCceecCCchHHHHHHHHHHHHH
Confidence 1125789999999999999999997763 12344557888999999999865
No 31
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=99.69 E-value=1.9e-16 Score=160.58 Aligned_cols=306 Identities=19% Similarity=0.189 Sum_probs=177.9
Q ss_pred CcEEEeCCCcceEEEEcCCCCCCeeccccceecCccccccCCCCCCeeeCcchhhcc--Cc----cee------------
Q psy16631 10 QPVVIDNGSGVIKAGFAGDQVPKCCFPNYIGRPKHIRVMAGALEGDIFVGPKAEEHR--GL----LSI------------ 71 (376)
Q Consensus 10 ~~vViD~Gs~~~k~G~a~~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~----~~~------------ 71 (376)
.+|.||+||.++++++..+..|. ++++.-+.+..+....-..++..++|+.|.... .+ +.+
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~-ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~~~~ 81 (627)
T PRK00290 3 KIIGIDLGTTNSCVAVMEGGEPK-VIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMGRRDEEVQ 81 (627)
T ss_pred cEEEEEeCcccEEEEEEECCEEE-EEECCCCCcccceEEEEeCCCCEEEcHHHHHhhhhCchhhHHHHHHHhCCCchHHH
Confidence 58999999999999998766665 334433333222211111124567777653210 00 000
Q ss_pred ----ecccc-------------CCcccCH-HHHHHHHHHhhcC--ccCCCCCCCCcEEEEeCCCCChHhHHHHHHHhhcc
Q psy16631 72 ----HYPME-------------HGIITDW-NDMERIWQYVYSN--DQLQTFSEEHPVLLTEAPLNPRRNREKAAEIFFES 131 (376)
Q Consensus 72 ----~~p~~-------------~g~i~d~-~~~~~~l~~~~~~--~~l~~~~~~~~vvl~~~~~~~~~~r~~~~~~lfe~ 131 (376)
.+|+. +|..... +....+|+++... .+++. .-..++++.|++++..+|+.+.+.+ +.
T Consensus 82 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~--~v~~~VItVPa~f~~~qR~a~~~Aa-~~ 158 (627)
T PRK00290 82 KDIKLVPYKIVKADNGDAWVEIDGKKYTPQEISAMILQKLKKDAEDYLGE--KVTEAVITVPAYFNDAQRQATKDAG-KI 158 (627)
T ss_pred HHhhcCCeEEEEcCCCceEEEECCEEEcHHHHHHHHHHHHHHHHHHHhCC--CCceEEEEECCCCCHHHHHHHHHHH-HH
Confidence 01111 1211222 2233344443311 12322 2346899999999999998876654 67
Q ss_pred cCCCceecchhhhhhhhhcCC-----ceEEEEecCCCceEEEEeeC--Cee-ccccceeecccHHHHHHHHHHHHHhc--
Q psy16631 132 FNVPALYVSMQAVLSLYATGR-----TTGVVLDSGDGVTHAVPIYE--GFA-MPHSIMRNDIAGRDVTRYLKLLLRKE-- 201 (376)
Q Consensus 132 ~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t~i~pv~d--G~~-~~~~~~~~~~GG~~l~~~l~~~l~~~-- 201 (376)
.|++.+.++++|.||+++++. .+-+|+|+|+++++|+.+.- |.. +..+.....+||.++++.|.+++..+
T Consensus 159 AGl~v~~li~EptAAAl~y~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~~~~~ 238 (627)
T PRK00290 159 AGLEVLRIINEPTAAALAYGLDKKGDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRIIDYLADEFK 238 (627)
T ss_pred cCCceEEEecchHHHHHHhhhccCCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCcChHHHHHHHHHHHHHHHH
Confidence 899999999999999988763 56899999999999988743 222 22223346799999999988777543
Q ss_pred ---CCCCccch-----HHHHHHHHHHhcccccCCccccccCCCCceEEECC----C--C-c--EEEeccccc-ccccccc
Q psy16631 202 ---GVNFRTTA-----EFEIVRTIKEKACYLSSNPVKEETTDSEKHTYVLP----D--G-S--SLDIGHARF-RAPEVLF 263 (376)
Q Consensus 202 ---~~~~~~~~-----~~~~~~~iK~~~~~~~~~~~~~~~~~~~~~~~~lp----d--~-~--~i~v~~~r~-~~~E~lF 263 (376)
+.++.... -...+|.+|+.++.... ..+.++ | | . .+.++.+.| ...+.++
T Consensus 239 ~~~~~~~~~~~~~~~rL~~~ae~aK~~LS~~~~------------~~i~i~~~~~d~~g~~~~~~~itR~~fe~l~~~l~ 306 (627)
T PRK00290 239 KENGIDLRKDKMALQRLKEAAEKAKIELSSAQQ------------TEINLPFITADASGPKHLEIKLTRAKFEELTEDLV 306 (627)
T ss_pred HhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCe------------EEEEEeecccCCCCCeEEEEEECHHHHHHHHHHHH
Confidence 22222111 12456777777643211 111111 1 1 1 233333221 1111121
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhCCHHHHHHhhcCeEeccCcccccCHHHHHHHHHHhhCCCCceEEEeCCCCCccchhhh
Q psy16631 264 RPDLIGEESEGIHDVLYYAIQKSDLDLRKVLYQNIVLSGGSTLFKGFGDRLLAEIRKNAPKDLKIRISAPQERLYSTWIG 343 (376)
Q Consensus 264 ~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~Gl~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~G 343 (376)
..+.+.|.+++...... ..-...|+|+||+|.+|.+.++|++.+.. .+....+|..++..|
T Consensus 307 ---------~~~~~~i~~~l~~a~~~--~~~id~ViLvGGssriP~v~~~l~~~fg~--------~~~~~~npdeava~G 367 (627)
T PRK00290 307 ---------ERTIEPCKQALKDAGLS--VSDIDEVILVGGSTRMPAVQELVKEFFGK--------EPNKGVNPDEVVAIG 367 (627)
T ss_pred ---------HHHHHHHHHHHHHcCCC--hhhCcEEEEECCcCCChHHHHHHHHHhCC--------CCCcCcCChHHHHHh
Confidence 12444555555544321 22357899999999999999999987632 133445688899999
Q ss_pred HHHhhcc
Q psy16631 344 GSILASL 350 (376)
Q Consensus 344 asi~a~l 350 (376)
|+++|..
T Consensus 368 Aa~~aa~ 374 (627)
T PRK00290 368 AAIQGGV 374 (627)
T ss_pred HHHHHHH
Confidence 9999864
No 32
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=99.69 E-value=4.3e-16 Score=157.16 Aligned_cols=311 Identities=14% Similarity=0.123 Sum_probs=179.5
Q ss_pred CCCcEEEeCCCcceEEEEcCCCCCCeeccccceecCccccccCCCCCCeeeCcchhhc--cCc----cee----------
Q psy16631 8 VNQPVVIDNGSGVIKAGFAGDQVPKCCFPNYIGRPKHIRVMAGALEGDIFVGPKAEEH--RGL----LSI---------- 71 (376)
Q Consensus 8 ~~~~vViD~Gs~~~k~G~a~~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~----~~~---------- 71 (376)
...+|.||+||.++.+++..+..|.. +|+..+....+.... ...+..++|+.|... ..+ +.+
T Consensus 26 ~~~viGIDLGTTnS~vA~~~~~~~~i-i~n~~g~r~tPS~V~-f~~~~~lvG~~Ak~~~~~~p~~ti~~~KRliG~~~~d 103 (657)
T PTZ00186 26 QGDVIGVDLGTTYSCVATMDGDKARV-LENSEGFRTTPSVVA-FKGSEKLVGLAAKRQAITNPQSTFYAVKRLIGRRFED 103 (657)
T ss_pred cceEEEEEeCcCeEEEEEEeCCceEE-eecCCCCcccceEEE-ECCCCEEEcHHHHHhhhhCchhHHHHHHHHhcccccc
Confidence 44689999999999999986655553 354444333322211 112345677655221 000 000
Q ss_pred --------ecccc--------------CCcccCHHH-HHHHHHHhhcC--ccCCCCCCCCcEEEEeCCCCChHhHHHHHH
Q psy16631 72 --------HYPME--------------HGIITDWND-MERIWQYVYSN--DQLQTFSEEHPVLLTEAPLNPRRNREKAAE 126 (376)
Q Consensus 72 --------~~p~~--------------~g~i~d~~~-~~~~l~~~~~~--~~l~~~~~~~~vvl~~~~~~~~~~r~~~~~ 126 (376)
.+|+. .|.....+. ...+|+++-.. .+++. .-..+||+.|++++..+|+.+.+
T Consensus 104 ~~v~~~~~~~p~~vv~~~~~~~~i~~~~~~~~speeisa~iL~~Lk~~Ae~~lg~--~v~~aVITVPayF~~~qR~at~~ 181 (657)
T PTZ00186 104 EHIQKDIKNVPYKIVRAGNGDAWVQDGNGKQYSPSQIGAFVLEKMKETAENFLGH--KVSNAVVTCPAYFNDAQRQATKD 181 (657)
T ss_pred HHHHHhhccCcEEEEEcCCCceEEEeCCCeEEcHHHHHHHHHHHHHHHHHHHhCC--ccceEEEEECCCCChHHHHHHHH
Confidence 01211 122222222 22333443210 12332 23568999999999999987666
Q ss_pred HhhcccCCCceecchhhhhhhhhcCC-----ceEEEEecCCCceEEEEee--CCeec-cccceeecccHHHHHHHHHHHH
Q psy16631 127 IFFESFNVPALYVSMQAVLSLYATGR-----TTGVVLDSGDGVTHAVPIY--EGFAM-PHSIMRNDIAGRDVTRYLKLLL 198 (376)
Q Consensus 127 ~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t~i~pv~--dG~~~-~~~~~~~~~GG~~l~~~l~~~l 198 (376)
.. +..|+..+.++++|.||++++|. ..-+|+|+|+++++|+.+. +|... ..+.....+||.++++.|.+++
T Consensus 182 Aa-~~AGl~v~rlInEPtAAAlayg~~~~~~~~vlV~DlGGGT~DvSil~~~~g~~~V~at~Gd~~LGG~DfD~~l~~~~ 260 (657)
T PTZ00186 182 AG-TIAGLNVIRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDFDLALSDYI 260 (657)
T ss_pred HH-HHcCCCeEEEEcChHHHHHHHhccCCCCCEEEEEECCCCeEEEEEEEEeCCEEEEEEecCCCCCCchhHHHHHHHHH
Confidence 54 77899999999999999988864 4679999999999998875 66543 2223356899999999888776
Q ss_pred Hhc-----CCCCccc-----hHHHHHHHHHHhcccccCCccccccCCCCceEEECC--CC---cEEEeccccc-cccccc
Q psy16631 199 RKE-----GVNFRTT-----AEFEIVRTIKEKACYLSSNPVKEETTDSEKHTYVLP--DG---SSLDIGHARF-RAPEVL 262 (376)
Q Consensus 199 ~~~-----~~~~~~~-----~~~~~~~~iK~~~~~~~~~~~~~~~~~~~~~~~~lp--d~---~~i~v~~~r~-~~~E~l 262 (376)
..+ +.++... .-...+|++|+.++..... .....+... +| ..+.++.+.| ...+.+
T Consensus 261 ~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~--------~i~i~~i~~~~~g~~~~~~~ItR~efe~l~~~l 332 (657)
T PTZ00186 261 LEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAMET--------EVNLPFITANADGAQHIQMHISRSKFEGITQRL 332 (657)
T ss_pred HHHHhhhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCce--------EEEEeeeccCCCCCcceEEEecHHHHHHHHHHH
Confidence 542 2222111 0124567788776543211 000111111 11 1233433322 111112
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHhCCHHHHHHhhcCeEeccCcccccCHHHHHHHHHHhhCCCCceEEEeCCCCCccchhh
Q psy16631 263 FRPDLIGEESEGIHDVLYYAIQKSDLDLRKVLYQNIVLSGGSTLFKGFGDRLLAEIRKNAPKDLKIRISAPQERLYSTWI 342 (376)
Q Consensus 263 F~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~Gl~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~ 342 (376)
++ .+.+.+.+++..... ...-...|+|+||+|.+|++.+.+.+.+.. .....-+|+.++..
T Consensus 333 ~~---------r~~~~v~~~L~~a~~--~~~dId~VvLVGGssriP~V~~~l~~~fg~--------~~~~~~nPdeaVA~ 393 (657)
T PTZ00186 333 IE---------RSIAPCKQCMKDAGV--ELKEINDVVLVGGMTRMPKVVEEVKKFFQK--------DPFRGVNPDEAVAL 393 (657)
T ss_pred HH---------HHHHHHHHHHHHcCC--ChhhCCEEEEECCcccChHHHHHHHHHhCC--------CccccCCCchHHHH
Confidence 11 233344444443322 223356899999999999999999987732 11233468889999
Q ss_pred hHHHhhcc
Q psy16631 343 GGSILASL 350 (376)
Q Consensus 343 Gasi~a~l 350 (376)
||+++|.+
T Consensus 394 GAAi~a~~ 401 (657)
T PTZ00186 394 GAATLGGV 401 (657)
T ss_pred hHHHHHHH
Confidence 99999864
No 33
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=99.68 E-value=2.9e-16 Score=158.59 Aligned_cols=309 Identities=18% Similarity=0.188 Sum_probs=177.9
Q ss_pred cEEEeCCCcceEEEEcCCCCCCeeccccceecCccccccCCCCCCeeeCcchhhc--cCc----cee-------------
Q psy16631 11 PVVIDNGSGVIKAGFAGDQVPKCCFPNYIGRPKHIRVMAGALEGDIFVGPKAEEH--RGL----LSI------------- 71 (376)
Q Consensus 11 ~vViD~Gs~~~k~G~a~~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~----~~~------------- 71 (376)
+|.||+||.++++++..+..|. ++++.-+.+..+....-..+...++|+.|... ..+ ..+
T Consensus 2 viGIDlGtt~s~va~~~~g~~~-ii~n~~~~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~~~~~ 80 (595)
T TIGR02350 2 IIGIDLGTTNSCVAVMEGGEPV-VIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTIYSIKRFMGRRFDEVTE 80 (595)
T ss_pred EEEEEeCcccEEEEEEECCEEE-EEECCCCCcccCeEEEEeCCCCEEECHHHHHhhhhCchhhhHHHHHHhCCCchHHHH
Confidence 6889999999999998776666 33544333332222111112356788766321 000 000
Q ss_pred ---ecccc------------CCcccCH-HHHHHHHHHhhcC--ccCCCCCCCCcEEEEeCCCCChHhHHHHHHHhhcccC
Q psy16631 72 ---HYPME------------HGIITDW-NDMERIWQYVYSN--DQLQTFSEEHPVLLTEAPLNPRRNREKAAEIFFESFN 133 (376)
Q Consensus 72 ---~~p~~------------~g~i~d~-~~~~~~l~~~~~~--~~l~~~~~~~~vvl~~~~~~~~~~r~~~~~~lfe~~~ 133 (376)
.+|+. .|..... +....+|+++... .+++. .-..++++.|++++..+|+.+.+. .+..|
T Consensus 81 ~~~~~~~~v~~~~~~~~~~v~~~~~~peel~a~~L~~l~~~a~~~~~~--~v~~~VItVPa~f~~~qR~a~~~A-a~~AG 157 (595)
T TIGR02350 81 EAKRVPYKVVGDGGDVRVKVDGKEYTPQEISAMILQKLKKDAEAYLGE--KVTEAVITVPAYFNDAQRQATKDA-GKIAG 157 (595)
T ss_pred HhhcCCeeEEcCCCceEEEECCEEecHHHHHHHHHHHHHHHHHHHhCC--CCCeEEEEECCCCCHHHHHHHHHH-HHHcC
Confidence 01111 1111122 2233344443311 12322 234689999999999999987775 46789
Q ss_pred CCceecchhhhhhhhhcCC------ceEEEEecCCCceEEEEee--CCee-ccccceeecccHHHHHHHHHHHHHhc---
Q psy16631 134 VPALYVSMQAVLSLYATGR------TTGVVLDSGDGVTHAVPIY--EGFA-MPHSIMRNDIAGRDVTRYLKLLLRKE--- 201 (376)
Q Consensus 134 ~~~v~~~~~~~~a~~~~g~------~tglVVDiG~~~t~i~pv~--dG~~-~~~~~~~~~~GG~~l~~~l~~~l~~~--- 201 (376)
++.+.++++|.||+++++. .+-+|+|+|+++++|+.+. +|.. +..+.....+||.++++.|.+++..+
T Consensus 158 l~v~~li~EptAAAl~y~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~~~~ 237 (595)
T TIGR02350 158 LEVLRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIIDWLADEFKK 237 (595)
T ss_pred CceEEEecchHHHHHHHhhcccCCCcEEEEEECCCCeEEEEEEEecCCeEEEEEecCCcccCchhHHHHHHHHHHHHHHH
Confidence 9999999999999987753 4579999999999998873 3322 22222345799999999998777542
Q ss_pred --CCCCccc-h----HHHHHHHHHHhcccccCCccccccCCCCceEEECCC--C-c--EEEeccccc-cccccccCCCCC
Q psy16631 202 --GVNFRTT-A----EFEIVRTIKEKACYLSSNPVKEETTDSEKHTYVLPD--G-S--SLDIGHARF-RAPEVLFRPDLI 268 (376)
Q Consensus 202 --~~~~~~~-~----~~~~~~~iK~~~~~~~~~~~~~~~~~~~~~~~~lpd--~-~--~i~v~~~r~-~~~E~lF~p~~~ 268 (376)
+.++... . -...+|.+|+.++..... .....+...| | . .+.++.+.| ...+.++
T Consensus 238 ~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~--------~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~l~----- 304 (595)
T TIGR02350 238 EEGIDLSKDKMALQRLKEAAEKAKIELSSVLST--------EINLPFITADASGPKHLEMTLTRAKFEELTADLV----- 304 (595)
T ss_pred hhCCCcccCHHHHHHHHHHHHHHHHHcCCCCce--------EEEeeecccCCCCCeeEEEEEeHHHHHHHHHHHH-----
Confidence 2222211 0 124567778776532110 0000111111 1 1 233333221 1112222
Q ss_pred CCCCCCHHHHHHHHHHhCCHHHHHHhhcCeEeccCcccccCHHHHHHHHHHhhCCCCceEEEeCCCCCccchhhhHHHhh
Q psy16631 269 GEESEGIHDVLYYAIQKSDLDLRKVLYQNIVLSGGSTLFKGFGDRLLAEIRKNAPKDLKIRISAPQERLYSTWIGGSILA 348 (376)
Q Consensus 269 ~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~Gl~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a 348 (376)
..+.+.|.+++..... ...-...|+|+||+|.+|++.+.+++.+.. .+....+|..++..||+++|
T Consensus 305 ----~~~~~~i~~~l~~a~~--~~~~i~~V~LvGGssriP~v~~~i~~~f~~--------~~~~~~~pdeava~GAa~~a 370 (595)
T TIGR02350 305 ----ERTKEPVRQALKDAGL--SASDIDEVILVGGSTRIPAVQELVKDFFGK--------EPNKSVNPDEVVAIGAAIQG 370 (595)
T ss_pred ----HHHHHHHHHHHHHcCC--CHhHCcEEEEECCcccChHHHHHHHHHhCC--------cccCCcCcHHHHHHHHHHHH
Confidence 1344555555554322 123357899999999999999999977631 23445578889999999998
Q ss_pred cc
Q psy16631 349 SL 350 (376)
Q Consensus 349 ~l 350 (376)
..
T Consensus 371 a~ 372 (595)
T TIGR02350 371 GV 372 (595)
T ss_pred HH
Confidence 64
No 34
>PRK13410 molecular chaperone DnaK; Provisional
Probab=99.68 E-value=7.2e-16 Score=156.13 Aligned_cols=213 Identities=17% Similarity=0.184 Sum_probs=135.1
Q ss_pred CcEEEEeCCCCChHhHHHHHHHhhcccCCCceecchhhhhhhhhcCC-----ceEEEEecCCCceEEEEee--CCee-cc
Q psy16631 106 HPVLLTEAPLNPRRNREKAAEIFFESFNVPALYVSMQAVLSLYATGR-----TTGVVLDSGDGVTHAVPIY--EGFA-MP 177 (376)
Q Consensus 106 ~~vvl~~~~~~~~~~r~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t~i~pv~--dG~~-~~ 177 (376)
..+||+.|++++..+|+.+.+.+ +..|++.+.++++|.||++++|. .+-+|+|+|+++++|+.+. +|.. +.
T Consensus 136 ~~~VITVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~ 214 (668)
T PRK13410 136 TGAVITVPAYFNDSQRQATRDAG-RIAGLEVERILNEPTAAALAYGLDRSSSQTVLVFDLGGGTFDVSLLEVGNGVFEVK 214 (668)
T ss_pred ceEEEEECCCCCHHHHHHHHHHH-HHcCCCeEEEecchHHHHHHhccccCCCCEEEEEECCCCeEEEEEEEEcCCeEEEE
Confidence 46999999999999998766665 77999999999999999998864 4679999999999998874 4432 22
Q ss_pred ccceeecccHHHHHHHHHHHHHhc-----CCCCccc-----hHHHHHHHHHHhcccccCCccccccCCCCceEEECC---
Q psy16631 178 HSIMRNDIAGRDVTRYLKLLLRKE-----GVNFRTT-----AEFEIVRTIKEKACYLSSNPVKEETTDSEKHTYVLP--- 244 (376)
Q Consensus 178 ~~~~~~~~GG~~l~~~l~~~l~~~-----~~~~~~~-----~~~~~~~~iK~~~~~~~~~~~~~~~~~~~~~~~~lp--- 244 (376)
.+.....+||.++++.|.+++..+ +.++... .-...+|.+|+.++.... ..+.+|
T Consensus 215 at~gd~~lGG~dfD~~l~~~l~~~f~~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~~------------~~i~i~~~~ 282 (668)
T PRK13410 215 ATSGDTQLGGNDFDKRIVDWLAEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGVSV------------TDISLPFIT 282 (668)
T ss_pred EeecCCCCChhHHHHHHHHHHHHHHHhhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCc------------eEEEEeeee
Confidence 223345799999999988776543 2222111 012356677777643211 111111
Q ss_pred ---CC-cE--EEeccccc-cccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHHhhcCeEeccCcccccCHHHHHHHH
Q psy16631 245 ---DG-SS--LDIGHARF-RAPEVLFRPDLIGEESEGIHDVLYYAIQKSDLDLRKVLYQNIVLSGGSTLFKGFGDRLLAE 317 (376)
Q Consensus 245 ---d~-~~--i~v~~~r~-~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~Gl~~rl~~e 317 (376)
+| .. ..++.+.| ...+.++ ..+.+.|.+++.... +...-...|+|+||+|.+|.+.+.+.+.
T Consensus 283 ~~~~g~~~~~~~itR~~FE~l~~~l~---------~r~~~~i~~~L~~ag--~~~~dId~VvLVGGssRiP~V~~~l~~~ 351 (668)
T PRK13410 283 ATEDGPKHIETRLDRKQFESLCGDLL---------DRLLRPVKRALKDAG--LSPEDIDEVVLVGGSTRMPMVQQLVRTL 351 (668)
T ss_pred cCCCCCeeEEEEECHHHHHHHHHHHH---------HHHHHHHHHHHHHcC--CChhhCcEEEEECCccccHHHHHHHHHH
Confidence 11 12 22322211 1111111 123444444444321 2223356899999999999999999876
Q ss_pred HHhhCCCCceEEEeCCCCCccchhhhHHHhhcc
Q psy16631 318 IRKNAPKDLKIRISAPQERLYSTWIGGSILASL 350 (376)
Q Consensus 318 L~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~l 350 (376)
+.. .+....+|+.++-.||+++|..
T Consensus 352 fg~--------~~~~~~npdeaVA~GAAi~aa~ 376 (668)
T PRK13410 352 IPR--------EPNQNVNPDEVVAVGAAIQAGI 376 (668)
T ss_pred cCC--------CcccCCCCchHHHHhHHHHHHh
Confidence 531 1233346778999999999875
No 35
>PRK13411 molecular chaperone DnaK; Provisional
Probab=99.67 E-value=8.6e-16 Score=155.80 Aligned_cols=219 Identities=16% Similarity=0.197 Sum_probs=137.2
Q ss_pred CcEEEEeCCCCChHhHHHHHHHhhcccCCCceecchhhhhhhhhcCC------ceEEEEecCCCceEEEEee--CCee-c
Q psy16631 106 HPVLLTEAPLNPRRNREKAAEIFFESFNVPALYVSMQAVLSLYATGR------TTGVVLDSGDGVTHAVPIY--EGFA-M 176 (376)
Q Consensus 106 ~~vvl~~~~~~~~~~r~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g~------~tglVVDiG~~~t~i~pv~--dG~~-~ 176 (376)
..++|+.|++++..+|+.+.+. .+..|++.+.++++|.||++++|. .+-+|+|+|+++++|+.+. +|.. +
T Consensus 134 ~~~VITVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EPtAAAl~y~~~~~~~~~~vlV~DlGgGT~dvsi~~~~~~~~~V 212 (653)
T PRK13411 134 TQAVITVPAYFTDAQRQATKDA-GTIAGLEVLRIINEPTAAALAYGLDKQDQEQLILVFDLGGGTFDVSILQLGDGVFEV 212 (653)
T ss_pred ceEEEEECCCCCcHHHHHHHHH-HHHcCCCeEEEecchHHHHHHhcccccCCCCEEEEEEcCCCeEEEEEEEEeCCEEEE
Confidence 5689999999999999987765 477899999999999999988764 3479999999999998763 3433 2
Q ss_pred cccceeecccHHHHHHHHHHHHHhc-----CCCCccch-----HHHHHHHHHHhcccccCCccccccCCCCceEEECCC-
Q psy16631 177 PHSIMRNDIAGRDVTRYLKLLLRKE-----GVNFRTTA-----EFEIVRTIKEKACYLSSNPVKEETTDSEKHTYVLPD- 245 (376)
Q Consensus 177 ~~~~~~~~~GG~~l~~~l~~~l~~~-----~~~~~~~~-----~~~~~~~iK~~~~~~~~~~~~~~~~~~~~~~~~lpd- 245 (376)
..+.....+||.++++.|.+++..+ +.++.... -...+|+.|+.++..... .....+...+
T Consensus 213 ~at~gd~~LGG~dfD~~l~~~l~~~f~~~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~~~--------~i~i~~~~~d~ 284 (653)
T PRK13411 213 KATAGNNHLGGDDFDNCIVDWLVENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSMLTT--------SINLPFITADE 284 (653)
T ss_pred EEEecCCCcCHHHHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCce--------EEEEeeeccCC
Confidence 2222345799999999988777543 22222111 124566777766432110 0000111111
Q ss_pred --Cc--EEEeccccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHHhhcCeEeccCcccccCHHHHHHHHHHhh
Q psy16631 246 --GS--SLDIGHARFRAPEVLFRPDLIGEESEGIHDVLYYAIQKSDLDLRKVLYQNIVLSGGSTLFKGFGDRLLAEIRKN 321 (376)
Q Consensus 246 --~~--~i~v~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~Gl~~rl~~eL~~~ 321 (376)
+. .+.++.+.| |-++.|-+ ..+.+.|.+++.... +...-...|+|+||+|.+|.+.++|++.+..
T Consensus 285 ~~~~~~~~~itR~~f---e~l~~~l~-----~~~~~~i~~~L~~a~--~~~~~id~ViLvGGssriP~v~~~l~~~f~~- 353 (653)
T PRK13411 285 TGPKHLEMELTRAKF---EELTKDLV-----EATIEPMQQALKDAG--LKPEDIDRVILVGGSTRIPAVQEAIQKFFGG- 353 (653)
T ss_pred CCCeeEEEEEcHHHH---HHHHHHHH-----HHHHHHHHHHHHHcC--CCHHHCcEEEEECCCCCcchHHHHHHHHcCC-
Confidence 11 233333222 11111100 124445555555442 2233457899999999999999999877632
Q ss_pred CCCCceEEEeCCCCCccchhhhHHHhhcc
Q psy16631 322 APKDLKIRISAPQERLYSTWIGGSILASL 350 (376)
Q Consensus 322 ~~~~~~i~v~~~~~~~~~~w~Gasi~a~l 350 (376)
..+....+|..++-.||++.|..
T Consensus 354 ------~~~~~~~npdeaVA~GAAi~aa~ 376 (653)
T PRK13411 354 ------KQPDRSVNPDEAVALGAAIQAGV 376 (653)
T ss_pred ------cCcCCCCCchHHHHHHHHHHHHh
Confidence 12334456788999999999864
No 36
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=99.66 E-value=2.1e-15 Score=151.98 Aligned_cols=213 Identities=14% Similarity=0.092 Sum_probs=134.1
Q ss_pred CCcEEEEeCCCCChHhHHHHHHHhhcccCCCceecchhhhhhhhhcCC-----ceEEEEecCCCceEEEEee--CCee-c
Q psy16631 105 EHPVLLTEAPLNPRRNREKAAEIFFESFNVPALYVSMQAVLSLYATGR-----TTGVVLDSGDGVTHAVPIY--EGFA-M 176 (376)
Q Consensus 105 ~~~vvl~~~~~~~~~~r~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t~i~pv~--dG~~-~ 176 (376)
-..++++.|++++..+|+.+.+. .+..|++.+.++++|.||+++++. ..-+|+|+|+++++|+.+. +|.. +
T Consensus 149 v~~~VITVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSv~~~~~~~~ev 227 (616)
T PRK05183 149 LDGAVITVPAYFDDAQRQATKDA-ARLAGLNVLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISILRLSKGVFEV 227 (616)
T ss_pred cceEEEEECCCCCHHHHHHHHHH-HHHcCCCeEEEecchHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEeeCCEEEE
Confidence 35789999999999999877655 578999999999999999987653 4568999999999998874 4432 2
Q ss_pred cccceeecccHHHHHHHHHHHHHhcC-CCCccc-h----HHHHHHHHHHhcccccCCccccccCCCCceEEECCCCcEEE
Q psy16631 177 PHSIMRNDIAGRDVTRYLKLLLRKEG-VNFRTT-A----EFEIVRTIKEKACYLSSNPVKEETTDSEKHTYVLPDGSSLD 250 (376)
Q Consensus 177 ~~~~~~~~~GG~~l~~~l~~~l~~~~-~~~~~~-~----~~~~~~~iK~~~~~~~~~~~~~~~~~~~~~~~~lpd~~~i~ 250 (376)
..+.....+||.++++.|.+++.++. .+.... . -...++..|+.++.. ....+.+++.. -.
T Consensus 228 lat~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~------------~~~~i~i~~~~-~~ 294 (616)
T PRK05183 228 LATGGDSALGGDDFDHLLADWILEQAGLSPRLDPEDQRLLLDAARAAKEALSDA------------DSVEVSVALWQ-GE 294 (616)
T ss_pred EEecCCCCcCHHHHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHHHHhcCCC------------ceEEEEEecCC-Ce
Confidence 22333467999999999998887642 122110 0 123456666665321 11122222110 01
Q ss_pred eccccc-cccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHHhhcCeEeccCcccccCHHHHHHHHHHhhCCCCceEE
Q psy16631 251 IGHARF-RAPEVLFRPDLIGEESEGIHDVLYYAIQKSDLDLRKVLYQNIVLSGGSTLFKGFGDRLLAEIRKNAPKDLKIR 329 (376)
Q Consensus 251 v~~~r~-~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~Gl~~rl~~eL~~~~~~~~~i~ 329 (376)
++.+.| .+.+.++ ..+.+.|.+++..... ...-...|+|+||+|.+|.+.++|.+.+.. .
T Consensus 295 itr~efe~l~~~l~---------~~~~~~i~~~L~~a~~--~~~~i~~ViLvGGssriP~v~~~l~~~fg~--------~ 355 (616)
T PRK05183 295 ITREQFNALIAPLV---------KRTLLACRRALRDAGV--EADEVKEVVMVGGSTRVPLVREAVGEFFGR--------T 355 (616)
T ss_pred EcHHHHHHHHHHHH---------HHHHHHHHHHHHHcCC--CcccCCEEEEECCcccChHHHHHHHHHhcc--------C
Confidence 222111 1111111 1233444444443321 112246799999999999999999877632 1
Q ss_pred EeCCCCCccchhhhHHHhhcc
Q psy16631 330 ISAPQERLYSTWIGGSILASL 350 (376)
Q Consensus 330 v~~~~~~~~~~w~Gasi~a~l 350 (376)
+....+|+.++-.||+++|..
T Consensus 356 ~~~~~npdeaVA~GAAi~a~~ 376 (616)
T PRK05183 356 PLTSIDPDKVVAIGAAIQADI 376 (616)
T ss_pred cCcCCCchHHHHHHHHHHHHH
Confidence 233457888999999999864
No 37
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=99.63 E-value=4.7e-15 Score=150.60 Aligned_cols=215 Identities=15% Similarity=0.163 Sum_probs=139.3
Q ss_pred CCcEEEEeCCCCChHhHHHHHHHhhcccCCCceecchhhhhhhhhcCC-------ceEEEEecCCCceEEEEee--CCee
Q psy16631 105 EHPVLLTEAPLNPRRNREKAAEIFFESFNVPALYVSMQAVLSLYATGR-------TTGVVLDSGDGVTHAVPIY--EGFA 175 (376)
Q Consensus 105 ~~~vvl~~~~~~~~~~r~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g~-------~tglVVDiG~~~t~i~pv~--dG~~ 175 (376)
-..++|+.|++++..+|+.+.+.+ +..|++.+.++++|.||+++++. .+-+|+|+|+++++|+.+. +|..
T Consensus 140 v~~~VItVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~ 218 (653)
T PTZ00009 140 VKDAVVTVPAYFNDSQRQATKDAG-TIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDGIF 218 (653)
T ss_pred cceeEEEeCCCCCHHHHHHHHHHH-HHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEEEeCCeE
Confidence 357999999999999988766654 77999999999999999987753 4689999999999998774 5543
Q ss_pred c-cccceeecccHHHHHHHHHHHHHhc------CCCCccc-----hHHHHHHHHHHhcccccCCccccccCCCCceEEEC
Q psy16631 176 M-PHSIMRNDIAGRDVTRYLKLLLRKE------GVNFRTT-----AEFEIVRTIKEKACYLSSNPVKEETTDSEKHTYVL 243 (376)
Q Consensus 176 ~-~~~~~~~~~GG~~l~~~l~~~l~~~------~~~~~~~-----~~~~~~~~iK~~~~~~~~~~~~~~~~~~~~~~~~l 243 (376)
. ..+.....+||.++++.|.+++..+ +.++... .-...+|++|+.++... ...+.+
T Consensus 219 ~v~a~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~~------------~~~i~i 286 (653)
T PTZ00009 219 EVKATAGDTHLGGEDFDNRLVEFCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSST------------QATIEI 286 (653)
T ss_pred EEEEecCCCCCChHHHHHHHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCCc------------eEEEEE
Confidence 2 2222345799999999988777543 1222111 01245677777664221 112222
Q ss_pred ---CCCc--EEEeccccc-cccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHHhhcCeEeccCcccccCHHHHHHHH
Q psy16631 244 ---PDGS--SLDIGHARF-RAPEVLFRPDLIGEESEGIHDVLYYAIQKSDLDLRKVLYQNIVLSGGSTLFKGFGDRLLAE 317 (376)
Q Consensus 244 ---pd~~--~i~v~~~r~-~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~Gl~~rl~~e 317 (376)
.++. .+.++.+.| ...+.+|+ .+.+.|.+++.....+ ..-.+.|+|+||+|.+|.+.++|.+.
T Consensus 287 ~~~~~~~d~~~~itR~~fe~l~~~l~~---------~~~~~i~~~L~~a~~~--~~~i~~ViLvGGssriP~v~~~i~~~ 355 (653)
T PTZ00009 287 DSLFEGIDYNVTISRARFEELCGDYFR---------NTLQPVEKVLKDAGMD--KRSVHEVVLVGGSTRIPKVQSLIKDF 355 (653)
T ss_pred EeccCCceEEEEECHHHHHHHHHHHHH---------HHHHHHHHHHHHcCCC--HHHCcEEEEECCCCCChhHHHHHHHH
Confidence 2332 233433322 11222221 2445566666655332 22357899999999999999999876
Q ss_pred HHhhCCCCceEEEeCCCCCccchhhhHHHhhcc
Q psy16631 318 IRKNAPKDLKIRISAPQERLYSTWIGGSILASL 350 (376)
Q Consensus 318 L~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~l 350 (376)
+... .+....+|+.++-.||+++|..
T Consensus 356 f~~~-------~~~~~~npdeaVA~GAa~~aa~ 381 (653)
T PTZ00009 356 FNGK-------EPCKSINPDEAVAYGAAVQAAI 381 (653)
T ss_pred hCCC-------CCCCCCCcchHHhhhhhhhHHH
Confidence 6321 2333446788999999998764
No 38
>PRK11678 putative chaperone; Provisional
Probab=99.56 E-value=5.7e-13 Score=129.01 Aligned_cols=89 Identities=17% Similarity=0.122 Sum_probs=67.8
Q ss_pred CCcEEEEeCCCCC-----hHhHHH--HHHHhhcccCCCceecchhhhhhhhhcCC-----ceEEEEecCCCceEEEEee-
Q psy16631 105 EHPVLLTEAPLNP-----RRNREK--AAEIFFESFNVPALYVSMQAVLSLYATGR-----TTGVVLDSGDGVTHAVPIY- 171 (376)
Q Consensus 105 ~~~vvl~~~~~~~-----~~~r~~--~~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t~i~pv~- 171 (376)
-..+||+.|..+. ..+|+. .+.-..+..|++.+.++++|.||+++++. ..-+|+|+|+++++++.|.
T Consensus 149 v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~~~~~vlV~D~GGGT~D~Svv~~ 228 (450)
T PRK11678 149 ITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLTEEKRVLVVDIGGGTTDCSMLLM 228 (450)
T ss_pred CCcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccCCCCeEEEEEeCCCeEEEEEEEe
Confidence 3568999999876 555543 34556688999999999999999998873 5689999999999998873
Q ss_pred CC----------eeccccceeecccHHHHHHHHH
Q psy16631 172 EG----------FAMPHSIMRNDIAGRDVTRYLK 195 (376)
Q Consensus 172 dG----------~~~~~~~~~~~~GG~~l~~~l~ 195 (376)
++ .++.++- ..+||+++++.|.
T Consensus 229 ~~~~~~~~~r~~~vla~~G--~~lGG~DfD~~L~ 260 (450)
T PRK11678 229 GPSWRGRADRSASLLGHSG--QRIGGNDLDIALA 260 (450)
T ss_pred cCcccccCCcceeEEecCC--CCCChHHHHHHHH
Confidence 21 1222221 3699999999985
No 39
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=99.53 E-value=4.2e-14 Score=143.74 Aligned_cols=215 Identities=20% Similarity=0.232 Sum_probs=134.8
Q ss_pred CcEEEEeCCCCChHhHHHHHHHhhcccCCCceecchhhhhhhhhcCC------ceEEEEecCCCceEEEEee--CCeec-
Q psy16631 106 HPVLLTEAPLNPRRNREKAAEIFFESFNVPALYVSMQAVLSLYATGR------TTGVVLDSGDGVTHAVPIY--EGFAM- 176 (376)
Q Consensus 106 ~~vvl~~~~~~~~~~r~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g~------~tglVVDiG~~~t~i~pv~--dG~~~- 176 (376)
..++++.|+.++..+|+.+.+.+ +..|++.+.++++|.||+++++. .+-+|+|+|+++++|+.+. +|..-
T Consensus 136 ~~~vitVPa~~~~~qr~~~~~Aa-~~agl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt~dvs~~~~~~~~~~v 214 (602)
T PF00012_consen 136 TDVVITVPAYFTDEQRQALRDAA-ELAGLNVLRLINEPTAAALAYGLERSDKGKTVLVVDFGGGTFDVSVVEFSNGQFEV 214 (602)
T ss_dssp EEEEEEE-TT--HHHHHHHHHHH-HHTT-EEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSEEEEEEEEEETTEEEE
T ss_pred ccceeeechhhhhhhhhcccccc-cccccccceeecccccccccccccccccccceeccccccceEeeeehhcccccccc
Confidence 46899999999999998777765 67899999999999999877653 4679999999999988873 56442
Q ss_pred cccceeecccHHHHHHHHHHHHHhc-----CCCCccc-----hHHHHHHHHHHhcccccCCccccccCCCCceEEE----
Q psy16631 177 PHSIMRNDIAGRDVTRYLKLLLRKE-----GVNFRTT-----AEFEIVRTIKEKACYLSSNPVKEETTDSEKHTYV---- 242 (376)
Q Consensus 177 ~~~~~~~~~GG~~l~~~l~~~l~~~-----~~~~~~~-----~~~~~~~~iK~~~~~~~~~~~~~~~~~~~~~~~~---- 242 (376)
........+||.++++.|.+++..+ +.+.... .-...++.+|+.++.... ....+.
T Consensus 215 ~~~~~~~~lGG~~~D~~l~~~~~~~~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~----------~~~~~~~~~~ 284 (602)
T PF00012_consen 215 LATAGDNNLGGRDFDEALAEYLLEKFKKKYKIDLRENPRAMARLLEAAEKAKEQLSSNDN----------TEITISIESL 284 (602)
T ss_dssp EEEEEETTCSHHHHHHHHHHHHHHHHHHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTSSS----------SEEEEEEEEE
T ss_pred cccccccccccceecceeeccccccccccccccccccccccccccccccccccccccccc----------cccccccccc
Confidence 2233456799999999998877643 2222211 112456677777644211 111111
Q ss_pred CCCCcE--EEeccccc-cccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHHhhcCeEeccCcccccCHHHHHHHHHH
Q psy16631 243 LPDGSS--LDIGHARF-RAPEVLFRPDLIGEESEGIHDVLYYAIQKSDLDLRKVLYQNIVLSGGSTLFKGFGDRLLAEIR 319 (376)
Q Consensus 243 lpd~~~--i~v~~~r~-~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~Gl~~rl~~eL~ 319 (376)
..+|.. +.|+.+.| ...+.+++ .+.+.|.+++..+... ..=...|+|+||+|.+|-+.++|.+.+.
T Consensus 285 ~~~~~~~~~~itr~~fe~l~~~~~~---------~~~~~i~~~l~~~~~~--~~~i~~V~lvGG~sr~p~v~~~l~~~f~ 353 (602)
T PF00012_consen 285 YDDGEDFSITITREEFEELCEPLLE---------RIIEPIEKALKDAGLK--KEDIDSVLLVGGSSRIPYVQEALKELFG 353 (602)
T ss_dssp ETTTEEEEEEEEHHHHHHHTHHHHH---------HTHHHHHHHHHHTT----GGGESEEEEESGGGGSHHHHHHHHHHTT
T ss_pred cccccccccccccceeccccccccc---------cccccccccccccccc--ccccceeEEecCcccchhhhhhhhhccc
Confidence 122433 33333322 11222222 2455666666655332 2234679999999999999999987663
Q ss_pred hhCCCCceEEEeCCCCCccchhhhHHHhhcc
Q psy16631 320 KNAPKDLKIRISAPQERLYSTWIGGSILASL 350 (376)
Q Consensus 320 ~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~l 350 (376)
. .+....+|..++-.||+++|..
T Consensus 354 ~--------~~~~~~~p~~aVA~GAa~~a~~ 376 (602)
T PF00012_consen 354 K--------KISKSVNPDEAVARGAALYAAI 376 (602)
T ss_dssp S--------EEB-SS-TTTHHHHHHHHHHHH
T ss_pred c--------ccccccccccccccccccchhh
Confidence 1 3444557888999999999864
No 40
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.52 E-value=5.3e-13 Score=127.35 Aligned_cols=174 Identities=18% Similarity=0.168 Sum_probs=111.9
Q ss_pred ChHhHHHHHHHhhcccCCCceecchhhhhhhhhcCC-----ceEEEEecCCCceEEEEeeCCeeccccceeecccHHHHH
Q psy16631 117 PRRNREKAAEIFFESFNVPALYVSMQAVLSLYATGR-----TTGVVLDSGDGVTHAVPIYEGFAMPHSIMRNDIAGRDVT 191 (376)
Q Consensus 117 ~~~~r~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t~i~pv~dG~~~~~~~~~~~~GG~~l~ 191 (376)
++...+.+.+ +++..|+.-+.+..+|+|+++++.. ...+|||+|+++|+++.+.+|.+.. ...+++||++++
T Consensus 156 ~~~~v~~~~~-~~~~aGl~~~~i~~~~~A~a~a~~~~~~~~~~~~vvDiG~gtt~i~i~~~g~~~~--~~~i~~GG~~it 232 (371)
T TIGR01174 156 SSTILRNLVK-CVERCGLEVDNIVLSGLASAIAVLTEDEKELGVCLIDIGGGTTDIAVYTGGSIRY--TKVIPIGGNHIT 232 (371)
T ss_pred EHHHHHHHHH-HHHHcCCCeeeEEEhhhhhhhhhcCcchhcCCEEEEEeCCCcEEEEEEECCEEEE--EeeecchHHHHH
Confidence 3344444444 5578999999999999999887642 3579999999999999999998775 356899999999
Q ss_pred HHHHHHHHhcCCCCccchHHHHHHHHHHhcccccCCccccccCCCCceEEECCC---CcEEEeccccc-cccccccCCCC
Q psy16631 192 RYLKLLLRKEGVNFRTTAEFEIVRTIKEKACYLSSNPVKEETTDSEKHTYVLPD---GSSLDIGHARF-RAPEVLFRPDL 267 (376)
Q Consensus 192 ~~l~~~l~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~~~~~~~lpd---~~~i~v~~~r~-~~~E~lF~p~~ 267 (376)
+.+.+.+. ...+.+|.+|.+++....+.. .....+.++. +....++.+.+ .+.+..+
T Consensus 233 ~~i~~~l~---------~~~~~AE~lK~~~~~~~~~~~------~~~~~i~~~~~~~~~~~~is~~~l~~ii~~~~---- 293 (371)
T TIGR01174 233 KDIAKALR---------TPLEEAERIKIKYGCASIPLE------GPDENIEIPSVGERPPRSLSRKELAEIIEARA---- 293 (371)
T ss_pred HHHHHHhC---------CCHHHHHHHHHHeeEecccCC------CCCCEEEeccCCCCCCeEEcHHHHHHHHHHHH----
Confidence 99877553 245789999999987643210 0111222221 11222221110 0011111
Q ss_pred CCCCCCCHHHHHH-HHHHhCCHHHHHHhhcCeEeccCcccccCHHHHHHHHHH
Q psy16631 268 IGEESEGIHDVLY-YAIQKSDLDLRKVLYQNIVLSGGSTLFKGFGDRLLAEIR 319 (376)
Q Consensus 268 ~~~~~~~l~~~I~-~~i~~~~~d~r~~l~~nIvl~GG~s~i~Gl~~rl~~eL~ 319 (376)
..+.+.|. +.+.+...+ ..+-+.|+||||+|++||+.+++.+.+.
T Consensus 294 -----~ei~~~i~~~~L~~~~~~--~~i~~gIvLtGG~S~ipgi~~~l~~~~~ 339 (371)
T TIGR01174 294 -----EEILEIVKQKELRKSGFK--EELNGGIVLTGGGAQLEGIVELAEKVFD 339 (371)
T ss_pred -----HHHHHHHHHHHHHhcCCc--ccCCCEEEEeChHHcccCHHHHHHHHhC
Confidence 12444444 555444332 2232349999999999999999999984
No 41
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=5.5e-12 Score=125.79 Aligned_cols=310 Identities=17% Similarity=0.152 Sum_probs=179.2
Q ss_pred CCcEEEeCCCcceEEEEcCCC-CCCeeccccceecCccccccCCCCCCeeeCcchhhc--cC----cceeeccccCC---
Q psy16631 9 NQPVVIDNGSGVIKAGFAGDQ-VPKCCFPNYIGRPKHIRVMAGALEGDIFVGPKAEEH--RG----LLSIHYPMEHG--- 78 (376)
Q Consensus 9 ~~~vViD~Gs~~~k~G~a~~~-~P~~~~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~--~~----~~~~~~p~~~g--- 78 (376)
..+|.||+||.++.+.+.... .|..+ ++..+.+..+....-..+++.++|..|... .+ ...+++.+..+
T Consensus 5 ~~~iGIDlGTTNS~vA~~~~~~~~~vi-~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~~~ 83 (579)
T COG0443 5 KKAIGIDLGTTNSVVAVMRGGGLPKVI-ENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRGSNG 83 (579)
T ss_pred ceEEEEEcCCCcEEEEEEeCCCCceEe-cCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCCCCC
Confidence 468999999999999998766 45544 666555444433222223468888776321 11 11223333321
Q ss_pred ---------cccCH-HHHHHHHHHhhcCccCCCCCCCCcEEEEeCCCCChHhHHHHHHHhhcccCCCceecchhhhhhhh
Q psy16631 79 ---------IITDW-NDMERIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNREKAAEIFFESFNVPALYVSMQAVLSLY 148 (376)
Q Consensus 79 ---------~i~d~-~~~~~~l~~~~~~~~l~~~~~~~~vvl~~~~~~~~~~r~~~~~~lfe~~~~~~v~~~~~~~~a~~ 148 (376)
..... +....++.++-..-.-.....-..++++.|.++...+|..+.+. .+..|++.+.++++|.||+|
T Consensus 84 ~~~~~~~~~~~~~~eeisa~~L~~lk~~ae~~lg~~v~~~VItVPayF~d~qR~at~~A-~~iaGl~vlrlinEPtAAAl 162 (579)
T COG0443 84 LKISVEVDGKKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDA-ARIAGLNVLRLINEPTAAAL 162 (579)
T ss_pred CcceeeeCCeeeCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEeCCCCCHHHHHHHHHH-HHHcCCCeEEEecchHHHHH
Confidence 11122 22223333322110001122346799999999999998866555 46799999999999999999
Q ss_pred hcCC-----ceEEEEecCCCceEEEEee--CCee-ccccceeecccHHHHHHHHHHHHHhcC-----CCCccch-H----
Q psy16631 149 ATGR-----TTGVVLDSGDGVTHAVPIY--EGFA-MPHSIMRNDIAGRDVTRYLKLLLRKEG-----VNFRTTA-E---- 210 (376)
Q Consensus 149 ~~g~-----~tglVVDiG~~~t~i~pv~--dG~~-~~~~~~~~~~GG~~l~~~l~~~l~~~~-----~~~~~~~-~---- 210 (376)
++|. ..-+|+|+|+++++++-|. +|.. +..+.....+||++++..|...+..+. .++.... .
T Consensus 163 ayg~~~~~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l~~~~~~~f~~~~~~d~~~~~~~~~rL 242 (579)
T COG0443 163 AYGLDKGKEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYLVMEFKGKGGIDLRSDKAALQRL 242 (579)
T ss_pred HhHhccCCCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHHHHHHHHHHHhhccCCccccccHHHHHHH
Confidence 9875 4679999999999999883 3432 334455678999999998877665531 2332211 1
Q ss_pred HHHHHHHHHhcccccCCccccccCCCCceEEECCCCcEEEeccccccccccccCCCCCCCCCCCHHHHHHHHHHhCCH--
Q psy16631 211 FEIVRTIKEKACYLSSNPVKEETTDSEKHTYVLPDGSSLDIGHARFRAPEVLFRPDLIGEESEGIHDVLYYAIQKSDL-- 288 (376)
Q Consensus 211 ~~~~~~iK~~~~~~~~~~~~~~~~~~~~~~~~lpd~~~i~v~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~-- 288 (376)
.+.++..|..++...... ..+..-++. +.+.. .....-|++ -+.+++.+++..+..
T Consensus 243 ~~~ae~aK~~LS~~~~~~----------i~~~~~~~~-~~~~~---~ltR~~~E~--------l~~dll~r~~~~~~~al 300 (579)
T COG0443 243 REAAEKAKIELSSATQTS----------INLPSIGGD-IDLLK---ELTRAKFEE--------LILDLLERTIEPVEQAL 300 (579)
T ss_pred HHHHHHHHHHcccccccc----------cchhhcccc-chhhh---hhhHHHHHH--------HHHHHHHHHHHHHHHHH
Confidence 255666676665433210 000000100 11100 111111111 123333344333321
Q ss_pred ---HHHHHhhcCeEeccCcccccCHHHHHHHHHHhhCCCCceEEEeCCCCCccchhhhHHHhhcc
Q psy16631 289 ---DLRKVLYQNIVLSGGSTLFKGFGDRLLAEIRKNAPKDLKIRISAPQERLYSTWIGGSILASL 350 (376)
Q Consensus 289 ---d~r~~l~~nIvl~GG~s~i~Gl~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~l 350 (376)
.+...=..-|+++||.+.+|=+.+.+.+.+. -......+|+-++-.||++.|..
T Consensus 301 ~~a~l~~~~I~~VilvGGstriP~V~~~v~~~f~--------~~~~~~inpdeava~GAa~qa~~ 357 (579)
T COG0443 301 KDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFG--------KEPEKSINPDEAVALGAAIQAAV 357 (579)
T ss_pred HHcCCChhhCceEEEccceeccHHHHHHHHHHhC--------ccccccCCccHHHHHHHHHHHHh
Confidence 1122334569999999999988888887664 12334446788899999998865
No 42
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=99.42 E-value=1e-12 Score=127.00 Aligned_cols=200 Identities=21% Similarity=0.201 Sum_probs=134.6
Q ss_pred hHhHHHHHHHhhcccCCCceecchhhhhhhhhcCC-----ceEEEEecCCCceEEEEeeCCeeccccceeecccHHHHHH
Q psy16631 118 RRNREKAAEIFFESFNVPALYVSMQAVLSLYATGR-----TTGVVLDSGDGVTHAVPIYEGFAMPHSIMRNDIAGRDVTR 192 (376)
Q Consensus 118 ~~~r~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t~i~pv~dG~~~~~~~~~~~~GG~~l~~ 192 (376)
....+.+.+ +++..|+.-..++.+|+|++++... ...+|||+|+++|+++.+.+|.++.. ..+++||+++++
T Consensus 165 ~~~~~~~~~-a~~~aGl~v~~iv~ep~Aaa~a~l~~~e~~~gv~vvDiGggtTdisv~~~G~l~~~--~~i~~GG~~it~ 241 (420)
T PRK09472 165 NDMAKNIVK-AVERCGLKVDQLIFAGLASSYAVLTEDERELGVCVVDIGGGTMDIAVYTGGALRHT--KVIPYAGNVVTS 241 (420)
T ss_pred hHHHHHHHH-HHHHcCCeEeeEEehhhHHHHHhcChhhhhcCeEEEEeCCCceEEEEEECCEEEEE--eeeechHHHHHH
Confidence 344455555 6688999999999999999998643 35799999999999999999988864 468999999999
Q ss_pred HHHHHHHhcCCCCccchHHHHHHHHHHhcccccCCccccccCCCCceEEECCC--C-cEEEeccccccccccccCCCCCC
Q psy16631 193 YLKLLLRKEGVNFRTTAEFEIVRTIKEKACYLSSNPVKEETTDSEKHTYVLPD--G-SSLDIGHARFRAPEVLFRPDLIG 269 (376)
Q Consensus 193 ~l~~~l~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~~~~~~~lpd--~-~~i~v~~~r~~~~E~lF~p~~~~ 269 (376)
.+...+. ...+.+|.+|.+++....+... ....+.++. + ....++ +....+++-..
T Consensus 242 dIa~~l~---------i~~~~AE~lK~~~g~~~~~~~~------~~~~i~v~~~~~~~~~~i~--~~~l~~ii~~r---- 300 (420)
T PRK09472 242 DIAYAFG---------TPPSDAEAIKVRHGCALGSIVG------KDESVEVPSVGGRPPRSLQ--RQTLAEVIEPR---- 300 (420)
T ss_pred HHHHHhC---------cCHHHHHHHHHhcceeccccCC------CCceeEecCCCCCCCeEEc--HHHHHHHHHHH----
Confidence 9987663 2457899999988765433211 111222221 1 111111 11111222100
Q ss_pred CCCCCHHHHHHHHHHhCCHHHHHH-----hhcCeEeccCcccccCHHHHHHHHHHhhCCCCceEEEeCC----------C
Q psy16631 270 EESEGIHDVLYYAIQKSDLDLRKV-----LYQNIVLSGGSTLFKGFGDRLLAEIRKNAPKDLKIRISAP----------Q 334 (376)
Q Consensus 270 ~~~~~l~~~I~~~i~~~~~d~r~~-----l~~nIvl~GG~s~i~Gl~~rl~~eL~~~~~~~~~i~v~~~----------~ 334 (376)
...|.+.|.+++..++.+++.. +.+.||||||+|++||+.+.+.+.+.. ++++..| .
T Consensus 301 --~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~------~vri~~P~~~~g~~~~~~ 372 (420)
T PRK09472 301 --YTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHT------QVRIGAPLNITGLTDYAQ 372 (420)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhCC------CeEEeCCcccCCChhhcC
Confidence 0124456667777676665543 445699999999999999999988842 4444322 3
Q ss_pred CCccchhhhHHHhhc
Q psy16631 335 ERLYSTWIGGSILAS 349 (376)
Q Consensus 335 ~~~~~~w~Gasi~a~ 349 (376)
+|.|++-.|...++.
T Consensus 373 ~P~~ata~Gl~~~~~ 387 (420)
T PRK09472 373 EPYYSTAVGLLHYGK 387 (420)
T ss_pred CcHHHHHHHHHHHhh
Confidence 688999999988875
No 43
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=99.24 E-value=2.4e-11 Score=115.07 Aligned_cols=201 Identities=20% Similarity=0.237 Sum_probs=130.8
Q ss_pred hHhHHHHHHHhhcccCCCceecchhhhhhhhhcC-----CceEEEEecCCCceEEEEeeCCeeccccceeecccHHHHHH
Q psy16631 118 RRNREKAAEIFFESFNVPALYVSMQAVLSLYATG-----RTTGVVLDSGDGVTHAVPIYEGFAMPHSIMRNDIAGRDVTR 192 (376)
Q Consensus 118 ~~~r~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g-----~~tglVVDiG~~~t~i~pv~dG~~~~~~~~~~~~GG~~l~~ 192 (376)
...-+++.+ ++|+.|..-..++.+|+|++.+.= ...+++||+|+++|+|+.+.+|.+.... .+|+||+++|+
T Consensus 164 ~~~~~Nl~k-~v~r~gl~v~~i~l~plAsa~a~L~~dEkelGv~lIDiG~GTTdIai~~~G~l~~~~--~ipvgG~~vT~ 240 (418)
T COG0849 164 KNILENLEK-CVERAGLKVDNIVLEPLASALAVLTEDEKELGVALIDIGGGTTDIAIYKNGALRYTG--VIPVGGDHVTK 240 (418)
T ss_pred hHHHHHHHH-HHHHhCCCeeeEEEehhhhhhhccCcccHhcCeEEEEeCCCcEEEEEEECCEEEEEe--eEeeCccHHHH
Confidence 334444444 458889888888899999987752 3678999999999999999999998865 58999999999
Q ss_pred HHHHHHHhcCCCCccchHHHHHHHHHHhcccccCCccccccCCCCceEEECCC-CcEEEeccccccccccccCCCCCCCC
Q psy16631 193 YLKLLLRKEGVNFRTTAEFEIVRTIKEKACYLSSNPVKEETTDSEKHTYVLPD-GSSLDIGHARFRAPEVLFRPDLIGEE 271 (376)
Q Consensus 193 ~l~~~l~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~~~~~~~lpd-~~~i~v~~~r~~~~E~lF~p~~~~~~ 271 (376)
.+...|.- +.+.+|.+|.+++....+.. .....++.|. |........+....+++=. -
T Consensus 241 DIa~~l~t---------~~~~AE~iK~~~g~a~~~~~------~~~~~i~v~~vg~~~~~~~t~~~ls~II~a------R 299 (418)
T COG0849 241 DIAKGLKT---------PFEEAERIKIKYGSALISLA------DDEETIEVPSVGSDIPRQVTRSELSEIIEA------R 299 (418)
T ss_pred HHHHHhCC---------CHHHHHHHHHHcCccccCcC------CCcceEecccCCCcccchhhHHHHHHHHHh------h
Confidence 99988753 55899999999987665431 1122222221 0000100111111111100 0
Q ss_pred CCCHHHHHHHHHHhCCHHHHHHhhcCeEeccCcccccCHHHHHHHHHHhhCCCCceEEEeCC----------CCCccchh
Q psy16631 272 SEGIHDVLYYAIQKSDLDLRKVLYQNIVLSGGSTLFKGFGDRLLAEIRKNAPKDLKIRISAP----------QERLYSTW 341 (376)
Q Consensus 272 ~~~l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~Gl~~rl~~eL~~~~~~~~~i~v~~~----------~~~~~~~w 341 (376)
..-+.+++...+++.-.. ..+..+|+||||++++||+.+-.++-+.. ++++..| .+|.|++-
T Consensus 300 ~~Ei~~lV~~~l~~~g~~--~~~~~gvVlTGG~a~l~Gi~elA~~if~~------~vRig~P~~~~Gl~d~~~~p~fs~a 371 (418)
T COG0849 300 VEEILELVKAELRKSGLP--NHLPGGVVLTGGGAQLPGIVELAERIFGR------PVRLGVPLNIVGLTDIARNPAFSTA 371 (418)
T ss_pred HHHHHHHHHHHHHHcCcc--ccCCCeEEEECchhcCccHHHHHHHhcCC------ceEeCCCccccCchhhccCchhhhh
Confidence 011223444444433222 55667899999999999999887766653 3333322 36899999
Q ss_pred hhHHHhhcc
Q psy16631 342 IGGSILASL 350 (376)
Q Consensus 342 ~Gasi~a~l 350 (376)
.|.-.++.+
T Consensus 372 vGl~~~~~~ 380 (418)
T COG0849 372 VGLLLYGAL 380 (418)
T ss_pred HHHHHHHhh
Confidence 999888875
No 44
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=99.22 E-value=3.1e-10 Score=106.02 Aligned_cols=284 Identities=14% Similarity=0.073 Sum_probs=158.4
Q ss_pred EeCCCcceEEEEcC-CCC-CCeeccccceecCcccc-ccC-----------CCCCCeeeCcchhhccCcceeeccccCCc
Q psy16631 14 IDNGSGVIKAGFAG-DQV-PKCCFPNYIGRPKHIRV-MAG-----------ALEGDIFVGPKAEEHRGLLSIHYPMEHGI 79 (376)
Q Consensus 14 iD~Gs~~~k~G~a~-~~~-P~~~~ps~v~~~~~~~~-~~~-----------~~~~~~~~g~~~~~~~~~~~~~~p~~~g~ 79 (376)
||+|-.++|+-+.. +.. -+..|||.++....... ..+ ..+..++||+.+...... ...+-+.+..
T Consensus 2 iDvGyg~~K~~~~~~~~~~~~~~fPS~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~y~VG~~a~~~~~~-~~~~~~~~~~ 80 (320)
T TIGR03739 2 VDVGYGNTKFVSQVRGTDIRCASFPSVAPPSSRESPAWPGGSEARKTVCVPVGGLFYEVGPDVSLAADT-NRARQLHDEY 80 (320)
T ss_pred ccccCCceEEEecCCCCceeeEEcccccccccccccccccccCCCceEEEEECCEEEEeccchhhcccC-ccceeccccc
Confidence 79999999987643 223 34678888765322110 000 123567888776322210 0111111111
Q ss_pred ccCHHHHHHHHHHhhcCccCCCCCCCCcEEEEeCCCCChHhHHHHHHHhhcc--------cCCCceecchhhhhhhhhc-
Q psy16631 80 ITDWNDMERIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNREKAAEIFFES--------FNVPALYVSMQAVLSLYAT- 150 (376)
Q Consensus 80 i~d~~~~~~~l~~~~~~~~l~~~~~~~~vvl~~~~~~~~~~r~~~~~~lfe~--------~~~~~v~~~~~~~~a~~~~- 150 (376)
.. -+....++.+++.. .... ....+++--|.-.-...|+.+.+.+-.. ..+..|.+.|+++.|.+..
T Consensus 81 ~~-~~~~~~L~~~Al~~--~~~~-~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~ 156 (320)
T TIGR03739 81 TE-TPEYMALLRGALAL--SKVR-EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFV 156 (320)
T ss_pred cC-CHHHHHHHHHHHHH--hcCC-CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHH
Confidence 11 14566677777632 2221 1123444444444455677777765432 4678899999999887643
Q ss_pred --------CCceEEEEecCCCceEEEEeeCCeeccccceeecccHHHHHHHHHHHHHhc-CCCCccchHHHHHHH-HHHh
Q psy16631 151 --------GRTTGVVLDSGDGVTHAVPIYEGFAMPHSIMRNDIAGRDVTRYLKLLLRKE-GVNFRTTAEFEIVRT-IKEK 220 (376)
Q Consensus 151 --------g~~tglVVDiG~~~t~i~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~-~~~~~~~~~~~~~~~-iK~~ 220 (376)
...+.+|||||+.+|+++.+-++.+........+.|-..+.+.+.+.+.++ +.+. ..+.+.++. ++..
T Consensus 157 ~~~~~~~~~~~~~lVIDIG~~TtD~~~~~~~~~~~~~s~s~~~G~~~~~~~I~~~i~~~~g~~~--~~~~~~i~~~l~~g 234 (320)
T TIGR03739 157 AQHGKLLTGKEQSLIIDPGYFTFDWLVARGMRLVQKRSGSVNGGMSDIYRLLAAEISKDIGTPA--YRDIDRIDLALRTG 234 (320)
T ss_pred hcCCCcccCcCcEEEEecCCCeeeeehccCCEEcccccCCchhHHHHHHHHHHHHHHhhcCCCC--ccCHHHHHHHHHhC
Confidence 235579999999999999888888887777778899999999999999865 3320 112335554 4322
Q ss_pred c-ccccCCccccccCCCCceEEECCCCcEEEeccccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHHhhcCeE
Q psy16631 221 A-CYLSSNPVKEETTDSEKHTYVLPDGSSLDIGHARFRAPEVLFRPDLIGEESEGIHDVLYYAIQKSDLDLRKVLYQNIV 299 (376)
Q Consensus 221 ~-~~~~~~~~~~~~~~~~~~~~~lpd~~~i~v~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIv 299 (376)
. ... .|+.+++.+..-. .+. -+.+.+.+........ .. +++|+
T Consensus 235 ~~~~~--------------------~gk~~di~~~~~~-~~~------------~~~~~v~~i~~~~~~~--~~-~~~Ii 278 (320)
T TIGR03739 235 KQPRI--------------------YQKPVDIKRCLEL-AET------------VAQQAVSTMMTWIGAP--ES-IQNIV 278 (320)
T ss_pred Cceee--------------------cceecCchHHHHH-HHH------------HHHHHHHHHHHhcccC--Cc-ccEEE
Confidence 1 000 1122222211100 000 0112222222222111 11 56899
Q ss_pred eccCcccccCHHHHHHHHHHhhCCCCceEEEeCCCCCccchhhhHHHhhc
Q psy16631 300 LSGGSTLFKGFGDRLLAEIRKNAPKDLKIRISAPQERLYSTWIGGSILAS 349 (376)
Q Consensus 300 l~GG~s~i~Gl~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~ 349 (376)
|+||+|. -+++.|+...|. .++...++|+++..+|--.++.
T Consensus 279 l~GGGa~------ll~~~l~~~f~~---~~i~~~~dp~~ANarG~~~~g~ 319 (320)
T TIGR03739 279 LVGGGAF------LFKKAVKAAFPK---HRIVEVDEPMFANVRGFQIAGL 319 (320)
T ss_pred EeCCcHH------HHHHHHHHHCCC---CeeEecCCcHHHHHHHHHHhhc
Confidence 9999986 233445554553 3455567899999999776653
No 45
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=99.20 E-value=1.3e-09 Score=102.45 Aligned_cols=289 Identities=15% Similarity=0.154 Sum_probs=154.4
Q ss_pred CcEEEeCCCcceEEEEcCCCCCCeeccccceecCc-cccccC------------CCCCC---eeeCcchhhccCcceeec
Q psy16631 10 QPVVIDNGSGVIKAGFAGDQVPKCCFPNYIGRPKH-IRVMAG------------ALEGD---IFVGPKAEEHRGLLSIHY 73 (376)
Q Consensus 10 ~~vViD~Gs~~~k~G~a~~~~P~~~~ps~v~~~~~-~~~~~~------------~~~~~---~~~g~~~~~~~~~~~~~~ 73 (376)
.++-||+|-.+||+-+... ...+|+.++.... ...+++ -.... +++|+++........-.+
T Consensus 3 ~v~~iDiG~g~tK~~~~~~---~~~~ps~~~~~~~~~~~~~~~~~~~~~~~~v~v~g~~~~~y~~G~~~~~~~~~~~~~~ 79 (344)
T PRK13917 3 YVMALDFGNGFVKGKINDE---KFVIPSRYGRKTNENNQLSGFVDNKLDVSEFIINGNEDEVLLFGNDLDKTTNTGKDTY 79 (344)
T ss_pred eEEEEeccCCeEEEEecCC---CEEcceeccCCCCccccccccCCCCCcceEEEecCcccccEEEcchhhhcccccCCcc
Confidence 3688999999999866421 2455776654321 111111 01123 788877633322100001
Q ss_pred cccCCcccCHHHHHHHHHHhhcCccCCC--CCCCCcEEE-E-eCCCCChHh-HHHHHHHhhcc-----------cCCCce
Q psy16631 74 PMEHGIITDWNDMERIWQYVYSNDQLQT--FSEEHPVLL-T-EAPLNPRRN-REKAAEIFFES-----------FNVPAL 137 (376)
Q Consensus 74 p~~~g~i~d~~~~~~~l~~~~~~~~l~~--~~~~~~vvl-~-~~~~~~~~~-r~~~~~~lfe~-----------~~~~~v 137 (376)
-.. ... .-+....++..++.. .+.. ......++| + -|.-.-... ++.+.+.+-.. ..+..|
T Consensus 80 ~~~-~~y-~~~~y~~L~~~Al~~-~~~~~~~~~~~~v~l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V 156 (344)
T PRK13917 80 STN-DRY-DIKQFKTLVKCALAG-LAARTVPEEVVEVVVATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGV 156 (344)
T ss_pred ccc-ccc-cchhHHHHHHHHHHH-hhhhhcCCCcceeEEEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEE
Confidence 111 111 124566676666521 1111 112223333 2 333221222 24454443221 456789
Q ss_pred ecchhhhhhhhhcCC-------------ceEEEEecCCCceEEEEeeCCeeccccceeecccHHHHHHHHHHHHHhcCCC
Q psy16631 138 YVSMQAVLSLYATGR-------------TTGVVLDSGDGVTHAVPIYEGFAMPHSIMRNDIAGRDVTRYLKLLLRKEGVN 204 (376)
Q Consensus 138 ~~~~~~~~a~~~~g~-------------~tglVVDiG~~~t~i~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~ 204 (376)
.++|++++|++.... ...+|||||+.+|+++.+.++.+.......++.|..++.+.+.+.+..+...
T Consensus 157 ~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~~TtD~~v~~~~~~~~~~s~s~~~G~~~~~~~I~~~i~~~~~~ 236 (344)
T PRK13917 157 KVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGSGTTDLDTIQNLKRVEEESFVIPKGTIDVYKRIASHISKKEEG 236 (344)
T ss_pred EEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCCCcEEEEEEeCcEEcccccccccchHHHHHHHHHHHHHhhCCC
Confidence 999999999865421 2459999999999999999999988877778999999999999999544322
Q ss_pred CccchHHHHHHHHHHhcccccCCccccccCCCCceEEECCCCcEEEeccccccccccccCCCCCCCCCCCHHHHHHHHHH
Q psy16631 205 FRTTAEFEIVRTIKEKACYLSSNPVKEETTDSEKHTYVLPDGSSLDIGHARFRAPEVLFRPDLIGEESEGIHDVLYYAIQ 284 (376)
Q Consensus 205 ~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~~~~~~~lpd~~~i~v~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~~i~ 284 (376)
.+ .+.+.++++.++ .. +.+..+..+++.++...+.+ .+.+.+.+.+.
T Consensus 237 ~~--~~~~~ie~~l~~-g~-----------------i~~~~~~~id~~~~~~~~~~-------------~~~~~i~~~i~ 283 (344)
T PRK13917 237 AS--ITPYMLEKGLEY-GA-----------------CKLNQKTVIDFKDEFYKEQD-------------SVIDEVMSGFE 283 (344)
T ss_pred CC--CCHHHHHHHHHc-Cc-----------------EEeCCCceEehHHHHHHHHH-------------HHHHHHHHHHH
Confidence 21 222455544322 11 11111223333322111111 12222222221
Q ss_pred hCCHHHHHHhhcCeEeccCcccccCHHHHHHHHHHhhCCCCceEEEeCCCCCccchhhhHHHhhcc
Q psy16631 285 KSDLDLRKVLYQNIVLSGGSTLFKGFGDRLLAEIRKNAPKDLKIRISAPQERLYSTWIGGSILASL 350 (376)
Q Consensus 285 ~~~~d~r~~l~~nIvl~GG~s~i~Gl~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~l 350 (376)
..=.+ ..=+++|+|+||+|.+ +.+.|++.+ + + +...++|+++.-.|...++.+
T Consensus 284 ~~~~~--~~~~d~IiL~GGGA~l--l~~~lk~~f----~---~--~~~~~~p~~ANa~G~~~~g~~ 336 (344)
T PRK13917 284 IAVGN--INSFDRVIVTGGGANI--FFDSLSHWY----S---D--VEKADESQFANVRGYYKYGEL 336 (344)
T ss_pred HHhcc--cCCCCEEEEECCcHHH--HHHHHHHHc----C---C--eEEcCChHHHHHHHHHHHHHH
Confidence 11000 1124679999999977 555555433 3 2 345578999999999888863
No 46
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=99.17 E-value=4.9e-09 Score=99.32 Aligned_cols=155 Identities=13% Similarity=0.085 Sum_probs=102.3
Q ss_pred ChHhHHHHHHHhhcccCCCceecchhhhhhhhhc----------C-Cc-eEEEEecCCCceEEEEeeCCeeccccceeec
Q psy16631 117 PRRNREKAAEIFFESFNVPALYVSMQAVLSLYAT----------G-RT-TGVVLDSGDGVTHAVPIYEGFAMPHSIMRND 184 (376)
Q Consensus 117 ~~~~r~~~~~~lfe~~~~~~v~~~~~~~~a~~~~----------g-~~-tglVVDiG~~~t~i~pv~dG~~~~~~~~~~~ 184 (376)
++...+.+.++ |+..|+.-..+..+++|..-.. . .. +.++||+|+++|+++.+.+|.+... +.++
T Consensus 141 ~~~~v~~~~~~-~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~~g~~~~~--r~i~ 217 (348)
T TIGR01175 141 RKEVVDSRLHA-LKLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLHPGRMLFT--REVP 217 (348)
T ss_pred cHHHHHHHHHH-HHHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEECCeEEEE--EEee
Confidence 55566666665 5778887777777777654322 1 22 4899999999999999999998874 5789
Q ss_pred ccHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHhcccccCCccccccCCCCceEEECCCCcEEEeccccccccccccC
Q psy16631 185 IAGRDVTRYLKLLLRKEGVNFRTTAEFEIVRTIKEKACYLSSNPVKEETTDSEKHTYVLPDGSSLDIGHARFRAPEVLFR 264 (376)
Q Consensus 185 ~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~~~~~~~lpd~~~i~v~~~r~~~~E~lF~ 264 (376)
+||.++++.+.+.+. .+.+.++.+|.+.++.... + ..+.+..+
T Consensus 218 ~G~~~i~~~i~~~~~---------~~~~~Ae~~k~~~~~~~~~-----------------~----------~~~~~~~~- 260 (348)
T TIGR01175 218 FGTRQLTSELSRAYG---------LNPEEAGEAKQQGGLPLLY-----------------D----------PEVLRRFK- 260 (348)
T ss_pred chHHHHHHHHHHHcC---------CCHHHHHHHHhcCCCCCch-----------------h----------HHHHHHHH-
Confidence 999999998876552 2447788888765432100 0 00000000
Q ss_pred CCCCCCCCCCHHHHHHHHHHhCCHHHHHHhhcCeEeccCcccccCHHHHHHHHHH
Q psy16631 265 PDLIGEESEGIHDVLYYAIQKSDLDLRKVLYQNIVLSGGSTLFKGFGDRLLAEIR 319 (376)
Q Consensus 265 p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~Gl~~rl~~eL~ 319 (376)
..|..-|.+++.-.-........+.|+||||++.++||.+.|+++|.
T Consensus 261 --------~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~ 307 (348)
T TIGR01175 261 --------GELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLG 307 (348)
T ss_pred --------HHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHC
Confidence 12444455555433222222235789999999999999999999994
No 47
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=99.11 E-value=3.4e-11 Score=99.97 Aligned_cols=202 Identities=18% Similarity=0.225 Sum_probs=129.9
Q ss_pred cccCCcccCHH----HHHHHHHHhhcCccCCCCCCCCcEEEEeCCCCChHhHHHHHHHhhcccCCCceecchhhhhhhhh
Q psy16631 74 PMEHGIITDWN----DMERIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNREKAAEIFFESFNVPALYVSMQAVLSLYA 149 (376)
Q Consensus 74 p~~~g~i~d~~----~~~~~l~~~~~~~~l~~~~~~~~vvl~~~~~~~~~~r~~~~~~lfe~~~~~~v~~~~~~~~a~~~ 149 (376)
.+++|.+.|+- .++++.+.+- .+|++......--+ ||-......+ +.--++|..|....+.+++|.++++-
T Consensus 62 vVRDGiVvdf~eaveiVrrlkd~lE--k~lGi~~tha~tai--PPGt~~~~~r-i~iNViESAGlevl~vlDEPTAaa~v 136 (277)
T COG4820 62 VVRDGIVVDFFEAVEIVRRLKDTLE--KQLGIRFTHAATAI--PPGTEQGDPR-ISINVIESAGLEVLHVLDEPTAAADV 136 (277)
T ss_pred hhccceEEehhhHHHHHHHHHHHHH--HhhCeEeeeccccC--CCCccCCCce-EEEEeecccCceeeeecCCchhHHHH
Confidence 45778887753 3334444333 24666432211111 3322111111 11124588999999999999999999
Q ss_pred cCCceEEEEecCCCceEEEEeeCCeeccccceeecccHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHhcccccCCcc
Q psy16631 150 TGRTTGVVLDSGDGVTHAVPIYEGFAMPHSIMRNDIAGRDVTRYLKLLLRKEGVNFRTTAEFEIVRTIKEKACYLSSNPV 229 (376)
Q Consensus 150 ~g~~tglVVDiG~~~t~i~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~ 229 (376)
.+..+|.|||+|.++|-|+.+-+|.++..+ .-+.||.+++-.|... ++ .+.+.+|+.|+..-.-.
T Consensus 137 L~l~dg~VVDiGGGTTGIsi~kkGkViy~A--DEpTGGtHmtLvlAG~---yg------i~~EeAE~~Kr~~k~~~---- 201 (277)
T COG4820 137 LQLDDGGVVDIGGGTTGISIVKKGKVIYSA--DEPTGGTHMTLVLAGN---YG------ISLEEAEQYKRGHKKGE---- 201 (277)
T ss_pred hccCCCcEEEeCCCcceeEEEEcCcEEEec--cCCCCceeEEEEEecc---cC------cCHhHHHHhhhccccch----
Confidence 999999999999999999999999999875 5689998877554421 12 24477888876421000
Q ss_pred ccccCCCCceEEECCCCcEEEeccccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHHhhcCeEeccCcccccC
Q psy16631 230 KEETTDSEKHTYVLPDGSSLDIGHARFRAPEVLFRPDLIGEESEGIHDVLYYAIQKSDLDLRKVLYQNIVLSGGSTLFKG 309 (376)
Q Consensus 230 ~~~~~~~~~~~~~lpd~~~i~v~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G 309 (376)
..| ......+ ..+.+++.+.|...++ ..+.|+||.++.||
T Consensus 202 ---------Eif---------------~~v~PV~---------eKMAeIv~~hie~~~i-------~dl~lvGGac~~~g 241 (277)
T COG4820 202 ---------EIF---------------PVVKPVY---------EKMAEIVARHIEGQGI-------TDLWLVGGACMQPG 241 (277)
T ss_pred ---------hcc---------------cchhHHH---------HHHHHHHHHHhccCCC-------cceEEecccccCcc
Confidence 000 0000000 2467777777766665 36899999999999
Q ss_pred HHHHHHHHHHhhCCCCceEEEeCCCCCccchhhh
Q psy16631 310 FGDRLLAEIRKNAPKDLKIRISAPQERLYSTWIG 343 (376)
Q Consensus 310 l~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~G 343 (376)
+.+-++++| ..+|+.|..|.|..=+|
T Consensus 242 ~e~~Fe~~l--------~l~v~~P~~p~y~TPLg 267 (277)
T COG4820 242 VEELFEKQL--------ALQVHLPQHPLYMTPLG 267 (277)
T ss_pred HHHHHHHHh--------ccccccCCCcceechhh
Confidence 999999999 33566665666655555
No 48
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=98.89 E-value=7.6e-08 Score=90.78 Aligned_cols=193 Identities=19% Similarity=0.239 Sum_probs=106.0
Q ss_pred CHHHHHHHHHHhhcCccCCCCCCC-----------------CcEEEEeCCCCChHhHHHHHHHhhcccCCCceecchhhh
Q psy16631 82 DWNDMERIWQYVYSNDQLQTFSEE-----------------HPVLLTEAPLNPRRNREKAAEIFFESFNVPALYVSMQAV 144 (376)
Q Consensus 82 d~~~~~~~l~~~~~~~~l~~~~~~-----------------~~vvl~~~~~~~~~~r~~~~~~lfe~~~~~~v~~~~~~~ 144 (376)
+.+.++..+++=..+ ++.....+ ..|+++. .++..-+..++ +|+..|..-..+--++.
T Consensus 86 ~~~el~~~I~~Ea~~-~iP~~~~e~~~D~~vl~~~~~~~~~~~Vll~A---a~k~~v~~~~~-~~~~aGL~~~~vDv~~~ 160 (340)
T PF11104_consen 86 PEKELEEAIRWEAEQ-YIPFPLEEVVFDYQVLGESEDGEEKMEVLLVA---APKEIVESYVE-LFEEAGLKPVAVDVEAF 160 (340)
T ss_dssp -HHHHHHHHHHHHGG-G-SS----EEEEEEESS-GS-TTSEEEEEEEE---EEHHHHHHHHH-HHHHTT-EEEEEEEHHH
T ss_pred CHHHHHHHHHHHHHh-hCCCChhHeEEEEEEeccCCCCCCceEEEEEE---EcHHHHHHHHH-HHHHcCCceEEEeehHH
Confidence 446677777766653 45443322 2344442 23344444444 45767776544433333
Q ss_pred h--hhhhc---------CCceEEEEecCCCceEEEEeeCCeeccccceeecccHHHHHHHHHHHHHhcCCCCccchHHHH
Q psy16631 145 L--SLYAT---------GRTTGVVLDSGDGVTHAVPIYEGFAMPHSIMRNDIAGRDVTRYLKLLLRKEGVNFRTTAEFEI 213 (376)
Q Consensus 145 ~--a~~~~---------g~~tglVVDiG~~~t~i~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~ 213 (376)
| -+|.. ...+-++||||+..|+++-+.+|.++.. +.+++||+++++.+.+.+. .+.+.
T Consensus 161 Al~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~~g~~~f~--R~i~~G~~~l~~~i~~~~~---------i~~~~ 229 (340)
T PF11104_consen 161 ALARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQNGKPIFS--RSIPIGGNDLTEAIARELG---------IDFEE 229 (340)
T ss_dssp HGGGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEETTEEEEE--EEES-SHHHHHHHHHHHTT-----------HHH
T ss_pred HHHHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEECCEEEEE--EEEeeCHHHHHHHHHHhcC---------CCHHH
Confidence 3 23322 1235699999999999999999999874 5789999999999987653 24467
Q ss_pred HHHHHHhcccccCCccccccCCCCceEEECCCCcEEEeccccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHH
Q psy16631 214 VRTIKEKACYLSSNPVKEETTDSEKHTYVLPDGSSLDIGHARFRAPEVLFRPDLIGEESEGIHDVLYYAIQKSDLDLRKV 293 (376)
Q Consensus 214 ~~~iK~~~~~~~~~~~~~~~~~~~~~~~~lpd~~~i~v~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~ 293 (376)
++.+|.+... ..+. ...+.+.++ ..|..-|.+++.-.-......
T Consensus 230 Ae~~k~~~~l-~~~~--------------------------~~~~l~~~~---------~~l~~EI~rsl~~y~~~~~~~ 273 (340)
T PF11104_consen 230 AEELKRSGGL-PEEY--------------------------DQDALRPFL---------EELAREIRRSLDFYQSQSGGE 273 (340)
T ss_dssp HHHHHHHT---------------------------------HHHHHHHHH---------HHHHHHHHHHHHHHHHH----
T ss_pred HHHHHhcCCC-Ccch--------------------------HHHHHHHHH---------HHHHHHHHHHHHHHHhcCCCC
Confidence 7777766321 1000 000001111 125555666665443333444
Q ss_pred hhcCeEeccCcccccCHHHHHHHHHHhhCCCCceEEEeC
Q psy16631 294 LYQNIVLSGGSTLFKGFGDRLLAEIRKNAPKDLKIRISA 332 (376)
Q Consensus 294 l~~nIvl~GG~s~i~Gl~~rl~~eL~~~~~~~~~i~v~~ 332 (376)
-.++|+|+||+|.++|+.+.|.++| +.++.+..
T Consensus 274 ~i~~I~L~Ggga~l~gL~~~l~~~l------~~~v~~~~ 306 (340)
T PF11104_consen 274 SIERIYLSGGGARLPGLAEYLSEEL------GIPVEVIN 306 (340)
T ss_dssp --SEEEEESGGGGSTTHHHHHHHHH------TSEEEE--
T ss_pred CCCEEEEECCccchhhHHHHHHHHH------CCceEEcC
Confidence 5678999999999999999999999 44666554
No 49
>KOG0104|consensus
Probab=98.83 E-value=7.7e-08 Score=94.45 Aligned_cols=192 Identities=19% Similarity=0.211 Sum_probs=115.6
Q ss_pred CCCcEEEeCCCcceEEEEcCCCCCCeeccccceecCccccccCCCCCCeeeCcchhhcc---------------------
Q psy16631 8 VNQPVVIDNGSGVIKAGFAGDQVPKCCFPNYIGRPKHIRVMAGALEGDIFVGPKAEEHR--------------------- 66 (376)
Q Consensus 8 ~~~~vViD~Gs~~~k~G~a~~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~~--------------------- 66 (376)
...++-||+||.++|+|.-.-..|.-+.=|.-.+++.+....- .+++-++|++|..+.
T Consensus 21 ~~AvmsVDlGse~~Kv~vVkPGvPmeIvLn~esrRKtp~~vaf-k~~eR~fg~~A~~ma~r~P~~~~~~l~~llgk~~~~ 99 (902)
T KOG0104|consen 21 ALAVMSVDLGSEWIKVAVVKPGVPMEIVLNKESRRKTPSIVAF-KGGERIFGEAAASMATRFPQSTYRQLKDLLGKSLDD 99 (902)
T ss_pred hhhheeeecccceeEEEEecCCCCeEEeechhhcccCcceEEe-cCCceehhhhhhhhhhcCcHHHHHHHHHHhCcccCC
Confidence 3457889999999999998766666554455555555433221 123445565542210
Q ss_pred ---Ccceeeccc-------cCCcc----cCHH--HHHHHHHHhhcC-ccCCCCC---CCCcEEEEeCCCCChHhHHHHHH
Q psy16631 67 ---GLLSIHYPM-------EHGII----TDWN--DMERIWQYVYSN-DQLQTFS---EEHPVLLTEAPLNPRRNREKAAE 126 (376)
Q Consensus 67 ---~~~~~~~p~-------~~g~i----~d~~--~~~~~l~~~~~~-~~l~~~~---~~~~vvl~~~~~~~~~~r~~~~~ 126 (376)
..++-++|. .++-| .|-+ .+|.++--++.+ ..+.-.. .=..++++.|+++...+|..+++
T Consensus 100 ~~v~ly~~~~p~~e~v~d~~rstV~F~i~d~~~ysvEellAMil~~a~~~ae~~a~~~Ikd~ViTVP~~F~qaeR~all~ 179 (902)
T KOG0104|consen 100 PTVDLYQKRFPFFELVEDPQRSTVVFKISDQEEYSVEELLAMILQYAKSLAEEYAKQPIKDMVITVPPFFNQAERRALLQ 179 (902)
T ss_pred cHHHHHHhcCCceeecccCccceEEEEeCCccccCHHHHHHHHHHHHHHHHHHHHhcchhheEEeCCcccCHHHHHHHHH
Confidence 001111221 12211 1100 123333222211 0111111 12458999999999999999888
Q ss_pred HhhcccCCCceecchhhhhhhhhcCC----------ceEEEEecCCCceEEEEee--------CCeecc----cc-ceee
Q psy16631 127 IFFESFNVPALYVSMQAVLSLYATGR----------TTGVVLDSGDGVTHAVPIY--------EGFAMP----HS-IMRN 183 (376)
Q Consensus 127 ~lfe~~~~~~v~~~~~~~~a~~~~g~----------~tglVVDiG~~~t~i~pv~--------dG~~~~----~~-~~~~ 183 (376)
.. +-.|...++++++..++++.+|. +.-++.|+|++.|..+.|. .|..++ -+ --..
T Consensus 180 Aa-~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v~~k~~g~~~p~i~~~gvGfd~ 258 (902)
T KOG0104|consen 180 AA-QIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLVKTKEQGGKQPQIQVLGVGFDR 258 (902)
T ss_pred HH-HhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEeeccccccCccceEEEEeeccCC
Confidence 76 55889999999999999988774 4569999999999998884 221111 01 1134
Q ss_pred cccHHHHHHHHHHHHHhc
Q psy16631 184 DIAGRDVTRYLKLLLRKE 201 (376)
Q Consensus 184 ~~GG~~l~~~l~~~l~~~ 201 (376)
.+||..++..|+.+|...
T Consensus 259 tLGG~e~~~rLr~~l~~~ 276 (902)
T KOG0104|consen 259 TLGGLEMTMRLRDHLANE 276 (902)
T ss_pred ccchHHHHHHHHHHHHHH
Confidence 589999999999888764
No 50
>KOG0101|consensus
Probab=98.81 E-value=2.5e-07 Score=90.85 Aligned_cols=218 Identities=16% Similarity=0.150 Sum_probs=131.6
Q ss_pred CcEEEEeCCCCChHhHHHHHHHhhcccCCCceecchhhhhhhhhcCC-------ceEEEEecCCCceEEEEee--CCe-e
Q psy16631 106 HPVLLTEAPLNPRRNREKAAEIFFESFNVPALYVSMQAVLSLYATGR-------TTGVVLDSGDGVTHAVPIY--EGF-A 175 (376)
Q Consensus 106 ~~vvl~~~~~~~~~~r~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g~-------~tglVVDiG~~~t~i~pv~--dG~-~ 175 (376)
..++++.|..+...+|..+-+.. ...|++.+.++++|.||++++|. .+-+|.|+|+++.+|.++. +|. .
T Consensus 144 ~~aviTVPa~F~~~Qr~at~~A~-~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l~i~gG~~~ 222 (620)
T KOG0101|consen 144 KKAVVTVPAYFNDSQRAATKDAA-LIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVLSLEGGIFE 222 (620)
T ss_pred eeEEEEecCCcCHHHHHHHHHHH-HhcCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeEEeccchhh
Confidence 46899999999999888666554 55888999999999999988773 4559999999999988883 443 2
Q ss_pred ccccceeecccHHHHHHHHHHHHHhc-----CCCCccc-----hHHHHHHHHHHhcccccCCccccccCCCCceEEECCC
Q psy16631 176 MPHSIMRNDIAGRDVTRYLKLLLRKE-----GVNFRTT-----AEFEIVRTIKEKACYLSSNPVKEETTDSEKHTYVLPD 245 (376)
Q Consensus 176 ~~~~~~~~~~GG~~l~~~l~~~l~~~-----~~~~~~~-----~~~~~~~~iK~~~~~~~~~~~~~~~~~~~~~~~~lpd 245 (376)
+.......++||.++++.|..++... +.+.... .-+..+|..|+.+......- ...=.|-+
T Consensus 223 vkat~gd~~lGGedf~~~l~~h~~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~~~~---------i~vdsL~~ 293 (620)
T KOG0101|consen 223 VKATAGDTHLGGEDFDNKLVNHFAAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSSTQAS---------IEIDSLYE 293 (620)
T ss_pred hhhhcccccccchhhhHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhhhcccccce---------eccchhhc
Confidence 33444456899999998877665432 2222211 11345566676663322100 00001223
Q ss_pred CcEEEe--ccccc-cccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHHhhcCeEeccCcccccCHHHHHHHHHHhhC
Q psy16631 246 GSSLDI--GHARF-RAPEVLFRPDLIGEESEGIHDVLYYAIQKSDLDLRKVLYQNIVLSGGSTLFKGFGDRLLAEIRKNA 322 (376)
Q Consensus 246 ~~~i~v--~~~r~-~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~Gl~~rl~~eL~~~~ 322 (376)
|..+.. ...|| ....-||. ...+.+.++++..- +-+.....|||+||.+.+|.+..-+++=+..
T Consensus 294 g~d~~~~itrarfe~l~~dlf~---------~~~~~v~~~L~da~--~dk~~i~~vvlVGGstriPk~~~ll~d~f~~-- 360 (620)
T KOG0101|consen 294 GIDFYTSITRARFEELNADLFR---------STLEPVEKALKDAK--LDKSDIDEVVLVGGSTRIPKVQKLLEDFFNG-- 360 (620)
T ss_pred cccccceeehhhhhhhhhHHHH---------HHHHHHHHHHHhhc--cCccCCceeEEecCcccchHHHHHHHHHhcc--
Confidence 322221 12221 11122232 22233334443332 1233345799999999999988777755532
Q ss_pred CCCceEEEeCCCCCccchhhhHHHhhccc
Q psy16631 323 PKDLKIRISAPQERLYSTWIGGSILASLD 351 (376)
Q Consensus 323 ~~~~~i~v~~~~~~~~~~w~Gasi~a~l~ 351 (376)
-++..+-+|+.++-.||++-|.+.
T Consensus 361 -----k~~~~sinpDeavA~GAavqaa~~ 384 (620)
T KOG0101|consen 361 -----KELNKSINPDEAVAYGAAVQAAIL 384 (620)
T ss_pred -----cccccCCCHHHHHHhhHHHHhhhc
Confidence 123344478889999999988763
No 51
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.81 E-value=4.6e-07 Score=81.53 Aligned_cols=118 Identities=18% Similarity=0.184 Sum_probs=78.7
Q ss_pred EEEEecCCCceEEEEeeCCeeccccceeecccHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHhcccccCCccccccC
Q psy16631 155 GVVLDSGDGVTHAVPIYEGFAMPHSIMRNDIAGRDVTRYLKLLLRKEGVNFRTTAEFEIVRTIKEKACYLSSNPVKEETT 234 (376)
Q Consensus 155 glVVDiG~~~t~i~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~ 234 (376)
.+|+|||+..|.+..+.+|+++.. +..++||+++++.+.+.... +.+.++++|....... ++..+
T Consensus 195 vav~~Igat~s~l~vi~~gk~ly~--r~~~~g~~Qlt~~i~r~~~L---------~~~~a~~~k~~~~~P~-~y~~~--- 259 (354)
T COG4972 195 VAVFDIGATSSELLVIQDGKILYT--REVPVGTDQLTQEIQRAYSL---------TEEKAEEIKRGGTLPT-DYGSE--- 259 (354)
T ss_pred heeeeecccceEEEEEECCeeeeE--eeccCcHHHHHHHHHHHhCC---------ChhHhHHHHhCCCCCC-chhHH---
Confidence 369999999999999999999985 57899999999998877642 3356677776543211 11000
Q ss_pred CCCceEEECCCCcEEEeccccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHHhhcCeEeccCcccccCHHHHH
Q psy16631 235 DSEKHTYVLPDGSSLDIGHARFRAPEVLFRPDLIGEESEGIHDVLYYAIQKSDLDLRKVLYQNIVLSGGSTLFKGFGDRL 314 (376)
Q Consensus 235 ~~~~~~~~lpd~~~i~v~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~Gl~~rl 314 (376)
.+ .|. ...|.+-|.++|+-.-..---.-...|+|+||++.+.|+.+.+
T Consensus 260 --------------------------vl-~~f-----~~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL~~~i 307 (354)
T COG4972 260 --------------------------VL-RPF-----LGELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGLAAAI 307 (354)
T ss_pred --------------------------HH-HHH-----HHHHHHHHHHHHHHHHhccccceeeEEEEecCCcchhhHHHHH
Confidence 00 000 0135555666665331110112245799999999999999999
Q ss_pred HHHHH
Q psy16631 315 LAEIR 319 (376)
Q Consensus 315 ~~eL~ 319 (376)
.+.|.
T Consensus 308 ~qrl~ 312 (354)
T COG4972 308 QQRLS 312 (354)
T ss_pred HHHhC
Confidence 99994
No 52
>KOG0100|consensus
Probab=98.73 E-value=5.1e-07 Score=83.00 Aligned_cols=213 Identities=17% Similarity=0.168 Sum_probs=120.7
Q ss_pred CcEEEEeCCCCChHhHHHHHHHhhcccCCCceecchhhhhhhhhcCC------ceEEEEecCCCceEEEEe--eCCee-c
Q psy16631 106 HPVLLTEAPLNPRRNREKAAEIFFESFNVPALYVSMQAVLSLYATGR------TTGVVLDSGDGVTHAVPI--YEGFA-M 176 (376)
Q Consensus 106 ~~vvl~~~~~~~~~~r~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g~------~tglVVDiG~~~t~i~pv--~dG~~-~ 176 (376)
...+++.|.++...+|+..-+. ---.|...+.++++|.+|++++|. .+-||.|+|+++.+|+-. -+|+- +
T Consensus 173 ~~AVvTvPAYFNDAQrQATKDA-GtIAgLnV~RIiNePTaAAIAYGLDKk~gEknilVfDLGGGTFDVSlLtIdnGVFeV 251 (663)
T KOG0100|consen 173 THAVVTVPAYFNDAQRQATKDA-GTIAGLNVVRIINEPTAAAIAYGLDKKDGEKNILVFDLGGGTFDVSLLTIDNGVFEV 251 (663)
T ss_pred cceEEecchhcchHHHhhhccc-ceeccceEEEeecCccHHHHHhcccccCCcceEEEEEcCCceEEEEEEEEcCceEEE
Confidence 4567888999999998865543 334677788999999999888864 577999999999776654 56643 2
Q ss_pred cccceeecccHHHHHHHHHHHHH----h-cCCCCccchHHHHHHHHHHhcccccCCccccccCCCCceEEECCCCcEEEe
Q psy16631 177 PHSIMRNDIAGRDVTRYLKLLLR----K-EGVNFRTTAEFEIVRTIKEKACYLSSNPVKEETTDSEKHTYVLPDGSSLDI 251 (376)
Q Consensus 177 ~~~~~~~~~GG~~l~~~l~~~l~----~-~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~~~~~~~lpd~~~i~v 251 (376)
..+-....+||.++++...+.+. + .+.++. .+...+.+++++.-...... ...+++.+
T Consensus 252 laTnGDThLGGEDFD~rvm~~fiklykkK~gkDv~--kdnkA~~KLrRe~EkAKRaL---------------Ssqhq~ri 314 (663)
T KOG0100|consen 252 LATNGDTHLGGEDFDQRVMEYFIKLYKKKHGKDVR--KDNKAVQKLRREVEKAKRAL---------------SSQHQVRI 314 (663)
T ss_pred EecCCCcccCccchHHHHHHHHHHHHhhhcCCccc--hhhHHHHHHHHHHHHHHhhh---------------ccccceEE
Confidence 22233557999998886655443 2 234442 34455555555432221110 00011111
Q ss_pred ccccccccccccCCCCCCCC---------CCCHHHHHHHHHHhC--CHHHHHHhhcCeEeccCcccccCHHHHHHHHHHh
Q psy16631 252 GHARFRAPEVLFRPDLIGEE---------SEGIHDVLYYAIQKS--DLDLRKVLYQNIVLSGGSTLFKGFGDRLLAEIRK 320 (376)
Q Consensus 252 ~~~r~~~~E~lF~p~~~~~~---------~~~l~~~I~~~i~~~--~~d~r~~l~~nIvl~GG~s~i~Gl~~rl~~eL~~ 320 (376)
--|.||+...+... .+.|...-.+-+++. +.++++.=..-|||+||++.||-+.+-|+.=+..
T Consensus 315 ------EIeS~fdG~DfSEtLtRAkFEElNmDLFr~TlkPv~kvl~Ds~lkKsdideiVLVGGsTrIPKvQqllk~fF~G 388 (663)
T KOG0100|consen 315 ------EIESLFDGVDFSETLTRAKFEELNMDLFRKTLKPVQKVLEDSDLKKSDIDEIVLVGGSTRIPKVQQLLKDFFNG 388 (663)
T ss_pred ------eeeeccccccccchhhhhHHHHhhhHHHHHhhHHHHHHHhhcCcccccCceEEEecCcccChhHHHHHHHHhCC
Confidence 11334443221110 011221212222222 4556666677899999999999877666543322
Q ss_pred hCCCCceEEEeCCCCCccchhhhHHHhhc
Q psy16631 321 NAPKDLKIRISAPQERLYSTWIGGSILAS 349 (376)
Q Consensus 321 ~~~~~~~i~v~~~~~~~~~~w~Gasi~a~ 349 (376)
.-|+ ..-+|+-++..||+.-|.
T Consensus 389 Keps-------kGinPdEAVAYGAAVQaG 410 (663)
T KOG0100|consen 389 KEPS-------KGINPDEAVAYGAAVQAG 410 (663)
T ss_pred CCcc-------CCCChHHHHHhhhhhhhc
Confidence 2121 111355667777776554
No 53
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=98.52 E-value=7.3e-07 Score=83.19 Aligned_cols=111 Identities=13% Similarity=0.120 Sum_probs=65.9
Q ss_pred HHHHhhcCccCCCCCCCCcEEEEeCC--CCC---hHhHHHHHH---Hhhc--------ccCCCceecchhhhhhhhhc--
Q psy16631 89 IWQYVYSNDQLQTFSEEHPVLLTEAP--LNP---RRNREKAAE---IFFE--------SFNVPALYVSMQAVLSLYAT-- 150 (376)
Q Consensus 89 ~l~~~~~~~~l~~~~~~~~vvl~~~~--~~~---~~~r~~~~~---~lfe--------~~~~~~v~~~~~~~~a~~~~-- 150 (376)
...|.+.+ -+..+.+-.+++..|. +.. ...++.+.+ .+.. .+.+..|.+.|++++|.|..
T Consensus 81 av~haL~~--~G~~~~~V~lvvGLPl~~y~~~~~~~~~~~i~rk~~n~~~~v~~~g~~~i~I~~V~V~PQ~~~A~~~~~~ 158 (318)
T PF06406_consen 81 AVHHALLK--AGLEPQDVDLVVGLPLSEYYDQDKQKNEENIERKKENLMRPVELNGGYTITIKDVEVFPQSVGAVFDALM 158 (318)
T ss_dssp HHHHHHHH--HS--SSEEEEEEEE-HHHHB-TTSSB-HHHHHHHHHHTTS-EEETTB---EEEEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHH--cCCCCCCeEEEecCCHHHHHhhhhhhHHHHHHhhhcccccceeecCceeEEEeeEEEEcccHHHHHHHHH
Confidence 34566643 4566666666776663 111 112233322 1221 34477899999999998864
Q ss_pred ---CCceEEEEecCCCceEEEEeeCCeecccc-ceeecccHHHHHHHHHHHHHhc
Q psy16631 151 ---GRTTGVVLDSGDGVTHAVPIYEGFAMPHS-IMRNDIAGRDVTRYLKLLLRKE 201 (376)
Q Consensus 151 ---g~~tglVVDiG~~~t~i~pv~dG~~~~~~-~~~~~~GG~~l~~~l~~~l~~~ 201 (376)
...+.+|||||+.+|+++.|.++....+. ....++|-..+.+.+.+.|...
T Consensus 159 ~~~~~~~~lVVDIGG~T~Dv~~v~~~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~~ 213 (318)
T PF06406_consen 159 DLDEDESVLVVDIGGRTTDVAVVRGGLPDISKCSGTPEIGVSDLYDAIAQALRSA 213 (318)
T ss_dssp TS-TTSEEEEEEE-SS-EEEEEEEGGG--EEEEEEETTSSTHHHHHHHHHHTT--
T ss_pred hhcccCcEEEEEcCCCeEEeeeecCCccccchhccCCchhHHHHHHHHHHHHHHh
Confidence 23678999999999999998776544433 3345789999999999988763
No 54
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=98.46 E-value=7.4e-06 Score=78.14 Aligned_cols=118 Identities=14% Similarity=0.182 Sum_probs=70.0
Q ss_pred eeccccCCcccCHHHHHHHHHHhhcCccCCCCCCC---CcEEEEeCCCCChHhHHHHHHHhh---cccCCCceecchhhh
Q psy16631 71 IHYPMEHGIITDWNDMERIWQYVYSNDQLQTFSEE---HPVLLTEAPLNPRRNREKAAEIFF---ESFNVPALYVSMQAV 144 (376)
Q Consensus 71 ~~~p~~~g~i~d~~~~~~~l~~~~~~~~l~~~~~~---~~vvl~~~~~~~~~~r~~~~~~lf---e~~~~~~v~~~~~~~ 144 (376)
..-|+......|-+.++.+.+.-|. +-++.+++ ...+++-.. ....+-.+.++.+= ..|=+...-+-.+.+
T Consensus 53 ~fTPl~~~~~ID~~~i~~~V~~ey~--~Agi~~~die~~ahIITg~~-~~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~i 129 (475)
T PRK10719 53 YFTPLLKQGEIDEAAIKELIEEEYQ--KAGIAPESIDSGAVIITGET-ARKENAREVVMALSGSAGDFVVATAGPDLESI 129 (475)
T ss_pred eecCCCCCccccHHHHHHHHHHHHH--HcCCCHHHccccEEEEEech-hHHHHHHHHHHHhcccccceeeeccCccHHHh
Confidence 3468877777799999999998884 46777653 234444322 22222222222210 001111111111222
Q ss_pred hhhhhcC--------CceEEEEecCCCceEEEEeeCCeeccccceeecccHHHHHHH
Q psy16631 145 LSLYATG--------RTTGVVLDSGDGVTHAVPIYEGFAMPHSIMRNDIAGRDVTRY 193 (376)
Q Consensus 145 ~a~~~~g--------~~tglVVDiG~~~t~i~pv~dG~~~~~~~~~~~~GG~~l~~~ 193 (376)
++.+++| ....++||||+++|+++.+.+|.++... .+++||++++..
T Consensus 130 va~~ASg~avLseEke~gVa~IDIGgGTT~iaVf~~G~l~~T~--~l~vGG~~IT~D 184 (475)
T PRK10719 130 IAGKGAGAQTLSEERNTRVLNIDIGGGTANYALFDAGKVIDTA--CLNVGGRLIETD 184 (475)
T ss_pred hhHHHhhHHHhhhhccCceEEEEeCCCceEEEEEECCEEEEEE--EEecccceEEEC
Confidence 2222222 2567999999999999999999998765 589999988764
No 55
>KOG0103|consensus
Probab=98.45 E-value=9.6e-06 Score=79.62 Aligned_cols=223 Identities=14% Similarity=0.151 Sum_probs=132.0
Q ss_pred CCCcEEEEeCCCCChHhHHHHHHHhhcccCCCceecchhhhhhhhhcCC------------ceEEEEecCCCceEEEEe-
Q psy16631 104 EEHPVLLTEAPLNPRRNREKAAEIFFESFNVPALYVSMQAVLSLYATGR------------TTGVVLDSGDGVTHAVPI- 170 (376)
Q Consensus 104 ~~~~vvl~~~~~~~~~~r~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g~------------~tglVVDiG~~~t~i~pv- 170 (376)
.-..++|..|.+++..+|..+++.. ...|+..+.++.+..|+++++|. .+-+.||+||+.++++..
T Consensus 136 ~v~DcvIavP~~FTd~qRravldAA-~iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~a 214 (727)
T KOG0103|consen 136 PVSDCVIAVPSYFTDSQRRAVLDAA-RIAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAA 214 (727)
T ss_pred CCCCeeEeccccccHHHHHHHHhHH-hhcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeee
Confidence 3457899999999999999999987 66899999999999999888873 346889999999877665
Q ss_pred -eCCee--ccccceeecccHHHHHHHHHHHHHhcC---CCCc--cch-----HHHHHHHHHHhcccccCCccccccCCCC
Q psy16631 171 -YEGFA--MPHSIMRNDIAGRDVTRYLKLLLRKEG---VNFR--TTA-----EFEIVRTIKEKACYLSSNPVKEETTDSE 237 (376)
Q Consensus 171 -~dG~~--~~~~~~~~~~GG~~l~~~l~~~l~~~~---~~~~--~~~-----~~~~~~~iK~~~~~~~~~~~~~~~~~~~ 237 (376)
-.|.. +.++ ..-.+||+++++.|.+++.... +.+. .+. -...++++|..+.--+.-+ -+.
T Consensus 215 F~kG~lkvl~ta-~D~~lGgr~fDe~L~~hfa~efk~kykidv~sn~kA~lRL~~~~EKlKK~lSAN~~~p------lNI 287 (727)
T KOG0103|consen 215 FTKGKLKVLATA-FDRKLGGRDFDEALIDHFAKEFKTKYKIDVRSNAKAKLRLLAECEKLKKVLSANTELP------LNI 287 (727)
T ss_pred eccCcceeeeee-cccccccchHHHHHHHHHHHHhccccccchhhchhHHHHHHHHHHHHHHHhhcCcCCC------cch
Confidence 44543 3333 2447999999999988887642 2221 111 2345677777653221100 000
Q ss_pred ceEEECCCCcEEEeccccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHHhhc---------CeEeccCccccc
Q psy16631 238 KHTYVLPDGSSLDIGHARFRAPEVLFRPDLIGEESEGIHDVLYYAIQKSDLDLRKVLYQ---------NIVLSGGSTLFK 308 (376)
Q Consensus 238 ~~~~~lpd~~~i~v~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~---------nIvl~GG~s~i~ 308 (376)
. .| +.| +++.. . ....-.-++....+.++...+.+.|.+ -|=++||+|.+|
T Consensus 288 E-cf-M~d---~dvs~-------~--------i~ReEfEel~~plL~rv~~p~~~~l~d~~l~~edi~~VEiVGg~srip 347 (727)
T KOG0103|consen 288 E-CF-MND---KDVSS-------K--------IKREEFEELSAPLLERVEVPLLKALADAKLKVEDIHAVEIVGGLSRIP 347 (727)
T ss_pred h-he-eec---chhhh-------h--------ccHHHHHHHHHHHHHhhhHHHHHHHHHhcCccccceeEEEecCcccch
Confidence 0 00 000 00000 0 000113334444444443333333333 578999999999
Q ss_pred CHHHHHHHHHHhhCCCCceEEEeCCCCCccchhhhHHHhhcc--ccccccceeHHH
Q psy16631 309 GFGDRLLAEIRKNAPKDLKIRISAPQERLYSTWIGGSILASL--DTFKRMWVSKRE 362 (376)
Q Consensus 309 Gl~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~l--~~~~~~~itk~e 362 (376)
-+.+.|..-...- ....-+.+.++-+||++-... ++|+-.|.+.+|
T Consensus 348 aike~Is~~Fgke--------~s~TlN~dEavarG~ALqcAIlSP~frVRef~v~D 395 (727)
T KOG0103|consen 348 AIKEMISDFFGKE--------LSRTLNQDEAVARGAALQCAILSPTFRVREFSVED 395 (727)
T ss_pred HHHHHHHHHhCCc--------ccccccHHHHHHHhHHHHHHhcCccccceecceec
Confidence 9998887644321 112224556677776664433 345555554444
No 56
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=98.34 E-value=1.9e-05 Score=71.03 Aligned_cols=155 Identities=18% Similarity=0.205 Sum_probs=83.7
Q ss_pred eEEEEecCCCceEEEEeeCCeecccc-ceeecccHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHhcccccCCccccc
Q psy16631 154 TGVVLDSGDGVTHAVPIYEGFAMPHS-IMRNDIAGRDVTRYLKLLLRKEGVNFRTTAEFEIVRTIKEKACYLSSNPVKEE 232 (376)
Q Consensus 154 tglVVDiG~~~t~i~pv~dG~~~~~~-~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~ 232 (376)
.-.|||||++.|.+.-+.+|.+..-. -..+..|+-.+.+.+.+.|. . +.+.+++++.+.-... ..
T Consensus 92 ~~~vidiGgqd~k~i~~~~g~~~~~~~n~~ca~Gtg~f~e~~a~~l~---~------~~~e~~~~~~~~~~~~-~~---- 157 (248)
T TIGR00241 92 ARGVIDIGGQDSKVIKIDDGKVDDFTMNDKCAAGTGRFLEVTARRLG---V------SVEELGSLAEKADRKA-KI---- 157 (248)
T ss_pred CCEEEEecCCeeEEEEECCCcEeeeeecCcccccccHHHHHHHHHcC---C------CHHHHHHHHhcCCCCC-Cc----
Confidence 34599999999999999999876211 12466788778877776663 2 2345555555421100 00
Q ss_pred cCCCCceEEECCCCcEEEeccccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHHhhc-CeEeccCcccccCHH
Q psy16631 233 TTDSEKHTYVLPDGSSLDIGHARFRAPEVLFRPDLIGEESEGIHDVLYYAIQKSDLDLRKVLYQ-NIVLSGGSTLFKGFG 311 (376)
Q Consensus 233 ~~~~~~~~~~lpd~~~i~v~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~-nIvl~GG~s~i~Gl~ 311 (376)
...-..|...+ .+..-.+-....+++ .+ -...+...+.+.+...+ .+ .|+++||.+..+++.
T Consensus 158 --~~~c~vf~~s~--vi~~l~~g~~~~di~-~~-----~~~~va~~i~~~~~~~~-------~~~~Vvl~GGva~n~~l~ 220 (248)
T TIGR00241 158 --SSMCTVFAESE--LISLLAAGVKKEDIL-AG-----VYESIAERVAEMLQRLK-------IEAPIVFTGGVSKNKGLV 220 (248)
T ss_pred --CCEeEEEechh--HHHHHHCCCCHHHHH-HH-----HHHHHHHHHHHHHhhcC-------CCCCEEEECccccCHHHH
Confidence 00000010000 000000000000000 00 00123333333332222 23 799999999999999
Q ss_pred HHHHHHHHhhCCCCceEEEeCCCCCccchhhhHHHh
Q psy16631 312 DRLLAEIRKNAPKDLKIRISAPQERLYSTWIGGSIL 347 (376)
Q Consensus 312 ~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~ 347 (376)
+++.+.| ...+..++++.+..-+||+++
T Consensus 221 ~~l~~~l--------g~~v~~~~~~~~~~AlGaAl~ 248 (248)
T TIGR00241 221 KALEKKL--------GMKVITPPEPQIVGAVGAALL 248 (248)
T ss_pred HHHHHHh--------CCcEEcCCCccHHHHHHHHhC
Confidence 9999988 235666777888899998864
No 57
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=98.17 E-value=2.5e-05 Score=73.49 Aligned_cols=48 Identities=27% Similarity=0.496 Sum_probs=41.2
Q ss_pred hhcCeEeccCcccccCHHHHHHHHHHhhCCCCceEEEeCCCCCccchhhhHHHhhc
Q psy16631 294 LYQNIVLSGGSTLFKGFGDRLLAEIRKNAPKDLKIRISAPQERLYSTWIGGSILAS 349 (376)
Q Consensus 294 l~~nIvl~GG~s~i~Gl~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~ 349 (376)
+-+.|+++||.++.+|+.+.|.+.|. .++..+++|++...+||+++|+
T Consensus 355 i~~~VvftGGva~N~gvv~ale~~Lg--------~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 355 VREPVILVGGTSLIEGLVKALGDLLG--------IEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred CCCcEEEECChhhhHHHHHHHHHHhC--------CcEEECCcccHHHHHHHHHHhc
Confidence 33459999999999999999999883 4567788999999999999984
No 58
>KOG0102|consensus
Probab=98.15 E-value=0.00012 Score=70.13 Aligned_cols=211 Identities=16% Similarity=0.174 Sum_probs=126.9
Q ss_pred CcEEEEeCCCCChHhHHHHHHHhhcccCCCceecchhhhhhhhhcCCc-----eEEEEecCCCceEEEEe--eCCeeccc
Q psy16631 106 HPVLLTEAPLNPRRNREKAAEIFFESFNVPALYVSMQAVLSLYATGRT-----TGVVLDSGDGVTHAVPI--YEGFAMPH 178 (376)
Q Consensus 106 ~~vvl~~~~~~~~~~r~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g~~-----tglVVDiG~~~t~i~pv--~dG~~~~~ 178 (376)
...+++.|.++...+|+..-+. ..-+|...+-.+++|.+|+.++|.. .-.|.|+|.++..|.-. .+|.-...
T Consensus 161 ~~avvtvpAyfndsqRqaTkda-g~iagl~vlrvineptaaalaygld~k~~g~iaV~dLgggtfdisilei~~gvfevk 239 (640)
T KOG0102|consen 161 KNAVITVPAYFNDSQRQATKDA-GQIAGLNVLRVINEPTAAALAYGLDKKEDGVIAVFDLGGGTFDISILEIEDGVFEVK 239 (640)
T ss_pred hheeeccHHHHhHHHHHHhHhh-hhhccceeeccCCccchhHHhhcccccCCCceEEEEcCCceeeeeeehhccceeEEE
Confidence 3578888999999888855444 4668888899999999999888753 44788999999776654 67765432
Q ss_pred -cceeecccHHHHHHHHHHHHHhc-----CCCCccchHH-------HHHHHHHHhcccccCCccccccCCCCceEEECCC
Q psy16631 179 -SIMRNDIAGRDVTRYLKLLLRKE-----GVNFRTTAEF-------EIVRTIKEKACYLSSNPVKEETTDSEKHTYVLPD 245 (376)
Q Consensus 179 -~~~~~~~GG~~l~~~l~~~l~~~-----~~~~~~~~~~-------~~~~~iK~~~~~~~~~~~~~~~~~~~~~~~~lpd 245 (376)
+-...-.||.+++.++..++-.. +.++. .+. +.+|+.|.++...... .....|.-.|
T Consensus 240 sTngdtflggedfd~~~~~~~v~~fk~~~gidl~--kd~~a~qrl~eaaEkaKielSs~~~t--------ei~lp~iTad 309 (640)
T KOG0102|consen 240 STNGDTHLGGEDFDNALVRFIVSEFKKEEGIDLT--KDRMALQRLREAAEKAKIELSSRQQT--------EINLPFITAD 309 (640)
T ss_pred eccCccccChhHHHHHHHHHHHHhhhcccCcchh--hhHHHHHHHHHHHHhhhhhhhhcccc--------eeccceeecc
Confidence 22345689999999988777542 33332 222 3444444444332211 1111122222
Q ss_pred C---cEEEeccccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHHhh-----cCeEeccCcccccCHHHHHHHH
Q psy16631 246 G---SSLDIGHARFRAPEVLFRPDLIGEESEGIHDVLYYAIQKSDLDLRKVLY-----QNIVLSGGSTLFKGFGDRLLAE 317 (376)
Q Consensus 246 ~---~~i~v~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~-----~nIvl~GG~s~i~Gl~~rl~~e 317 (376)
- +.+.+...|-..-| -++.+|.+.|.-|-.++|..=. +.|+|+||.+.+|-..+.++ |
T Consensus 310 a~gpkh~~i~~tr~efe~-------------~v~~lI~Rti~p~~~aL~dA~~~~~di~EV~lvggmtrmpkv~s~V~-e 375 (640)
T KOG0102|consen 310 ASGPKHLNIELTRGEFEE-------------LVPSLIARTIEPCKKALRDASLSSSDINEVILVGGMTRMPKVQSTVK-E 375 (640)
T ss_pred CCCCeeEEEeecHHHHHH-------------hhHHHHHhhhhHHHHHHHhccCChhhhhhhhhhcchhhcHHHHHHHH-H
Confidence 1 33444333222111 2556777777766655554433 46999999999998887776 4
Q ss_pred HHhhCCCCceEEEeCCCCCccchhhhHHHhh
Q psy16631 318 IRKNAPKDLKIRISAPQERLYSTWIGGSILA 348 (376)
Q Consensus 318 L~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a 348 (376)
+....|.. .-+|+-++-.||++-+
T Consensus 376 ~fgk~p~~-------~vnPdeava~GAaiqg 399 (640)
T KOG0102|consen 376 LFGKGPSK-------GVNPDEAVAGGAAIQG 399 (640)
T ss_pred HhCCCCCC-------CcCCcchhccchhhcc
Confidence 54433321 1134445555555543
No 59
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=98.08 E-value=5.9e-05 Score=68.33 Aligned_cols=48 Identities=10% Similarity=0.185 Sum_probs=39.7
Q ss_pred HhhcCeEeccCcccccCHHHHHHHHHHhhCCCCceEEEe-CCCCCccchhhhHHHhh
Q psy16631 293 VLYQNIVLSGGSTLFKGFGDRLLAEIRKNAPKDLKIRIS-APQERLYSTWIGGSILA 348 (376)
Q Consensus 293 ~l~~nIvl~GG~s~i~Gl~~rl~~eL~~~~~~~~~i~v~-~~~~~~~~~w~Gasi~a 348 (376)
.+-..|+++||.+.-+|+.+.|+++|.. ++. .+++|++..-+||+++|
T Consensus 238 ~i~~~v~~~GGva~N~~l~~al~~~Lg~--------~v~~~p~~p~~~GAlGAAL~A 286 (293)
T TIGR03192 238 GVEEGFFITGGIAKNPGVVKRIERILGI--------KAVDTKIDSQIAGALGAALFG 286 (293)
T ss_pred CCCCCEEEECcccccHHHHHHHHHHhCC--------CceeCCCCccHHHHHHHHHHH
Confidence 3456799999999999999999999932 333 36679999999999998
No 60
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=97.66 E-value=0.00053 Score=61.33 Aligned_cols=50 Identities=18% Similarity=0.379 Sum_probs=40.7
Q ss_pred cCeEeccCcccccCHHHHHHHHHHhhCCCCceEEEeCCCCCccchhhhHHHhh
Q psy16631 296 QNIVLSGGSTLFKGFGDRLLAEIRKNAPKDLKIRISAPQERLYSTWIGGSILA 348 (376)
Q Consensus 296 ~nIvl~GG~s~i~Gl~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a 348 (376)
.+|+++||.+.-+|+.+.|+++|... ...+.+..+++|++...+||++++
T Consensus 213 ~~v~~~GGva~n~~~~~~le~~l~~~---~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 213 GTVLCTGGLALDAGLLEALKDAIQEA---KMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred CcEEEECcccccHHHHHHHHHHhccC---CcceEecCCCcchHHHHHHHHHcC
Confidence 36999999999999999999999532 124556667889999999999875
No 61
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=97.55 E-value=0.0018 Score=60.03 Aligned_cols=44 Identities=27% Similarity=0.328 Sum_probs=40.7
Q ss_pred eEeccCcccccCHHHHHHHHHHhhCCCCceEEEeCCCCCccchhhhHHHhhc
Q psy16631 298 IVLSGGSTLFKGFGDRLLAEIRKNAPKDLKIRISAPQERLYSTWIGGSILAS 349 (376)
Q Consensus 298 Ivl~GG~s~i~Gl~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~ 349 (376)
||++||.++..++.+.+.+.| ..+|..|+.+++.-.+||+++++
T Consensus 346 iv~~GGva~n~av~~ale~~l--------g~~V~vP~~~ql~GAiGAAL~a~ 389 (396)
T COG1924 346 IVLQGGVALNKAVVRALEDLL--------GRKVIVPPYAQLMGAIGAALIAK 389 (396)
T ss_pred EEEECcchhhHHHHHHHHHHh--------CCeeecCCccchhhHHHHHHHHh
Confidence 999999999999999999998 46788999999999999999985
No 62
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=97.30 E-value=0.0027 Score=60.99 Aligned_cols=129 Identities=18% Similarity=0.236 Sum_probs=85.9
Q ss_pred eccccCCcccCHHHHHHHHHHhhcCccCCCCCCC---CcEEEEeCCCCChHhHHHHHHHhhcccC---CCceecchhhhh
Q psy16631 72 HYPMEHGIITDWNDMERIWQYVYSNDQLQTFSEE---HPVLLTEAPLNPRRNREKAAEIFFESFN---VPALYVSMQAVL 145 (376)
Q Consensus 72 ~~p~~~g~i~d~~~~~~~l~~~~~~~~l~~~~~~---~~vvl~~~~~~~~~~r~~~~~~lfe~~~---~~~v~~~~~~~~ 145 (376)
+-|+.+....|-+.++.+.+.-|. +-++.+++ -.|++|-... .+++=+.+.+.|-+..| +...-=-.+++.
T Consensus 51 fTPl~~~~~ID~~al~~iv~~eY~--~Agi~p~~I~TGAVIITGETA-rKeNA~~v~~~Ls~~aGDFVVATAGPdLEsii 127 (473)
T PF06277_consen 51 FTPLLSQTEIDAEALKEIVEEEYR--KAGITPEDIDTGAVIITGETA-RKENAREVLHALSGFAGDFVVATAGPDLESII 127 (473)
T ss_pred ccCCCCCCccCHHHHHHHHHHHHH--HcCCCHHHCccccEEEecchh-hhhhHHHHHHHHHHhcCCEEEEccCCCHHHHH
Confidence 468888777899999999999885 47777764 3678775443 23333345555544333 222222345666
Q ss_pred hhhhcCC--------ceEEEEecCCCceEEEEeeCCeeccccceeecccHHH-----------HHHHHHHHHHhcCCCC
Q psy16631 146 SLYATGR--------TTGVVLDSGDGVTHAVPIYEGFAMPHSIMRNDIAGRD-----------VTRYLKLLLRKEGVNF 205 (376)
Q Consensus 146 a~~~~g~--------~tglVVDiG~~~t~i~pv~dG~~~~~~~~~~~~GG~~-----------l~~~l~~~l~~~~~~~ 205 (376)
|..|+|. .+-+=+|||+++|.++.+.+|.++..++ +++||+. +..-++.++...+.++
T Consensus 128 AgkGsGA~~~S~~~~~~V~NiDIGGGTtN~avf~~G~v~~T~c--l~IGGRLi~~d~~g~i~yis~~~~~l~~~~~~~~ 204 (473)
T PF06277_consen 128 AGKGSGAAALSKEHHTVVANIDIGGGTTNIAVFDNGEVIDTAC--LDIGGRLIEFDPDGRITYISPPIQRLLEELGLEL 204 (473)
T ss_pred hccCccHHHHhhhhCCeEEEEEeCCCceeEEEEECCEEEEEEE--EeeccEEEEEcCCCcEEEECHHHHHHHHHhCCCC
Confidence 7666662 3445579999999999999999998765 6899974 3445566666665554
No 63
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=96.25 E-value=0.011 Score=55.53 Aligned_cols=52 Identities=19% Similarity=0.327 Sum_probs=42.8
Q ss_pred hhcCeEeccCcccccCHHHHHHHHHHhhCCCCceEEEeCCCCCccchhhhHHHhh
Q psy16631 294 LYQNIVLSGGSTLFKGFGDRLLAEIRKNAPKDLKIRISAPQERLYSTWIGGSILA 348 (376)
Q Consensus 294 l~~nIvl~GG~s~i~Gl~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a 348 (376)
+-..|+++||.++-+|+.+.|.+.|....+ ..+|..++++++..-+||+++|
T Consensus 381 i~~~VvftGGvA~N~gvv~aLe~~L~~~~~---~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 381 ITDQFTFTGGVAKNEAAVKELRKLIKENYG---EVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred CCCCEEEECCccccHHHHHHHHHHHccccC---CCeEecCCCccHHHHHHHHHhC
Confidence 346899999999999999999999964322 2457778899999999999875
No 64
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=95.97 E-value=0.024 Score=50.53 Aligned_cols=204 Identities=19% Similarity=0.108 Sum_probs=108.0
Q ss_pred hHhHHHHHHHhhcccCCCceecchhhhhhhhhcCC-----ceEEEEecCCCceEEEEee-CCeeccccceeecccHHHHH
Q psy16631 118 RRNREKAAEIFFESFNVPALYVSMQAVLSLYATGR-----TTGVVLDSGDGVTHAVPIY-EGFAMPHSIMRNDIAGRDVT 191 (376)
Q Consensus 118 ~~~r~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t~i~pv~-dG~~~~~~~~~~~~GG~~l~ 191 (376)
+..-+.+++.+-+.+|++.-.-.-++-+|..|+=. ..-.|+|+|+++|+.+-+- +|.+.. ..+-=.|+.++
T Consensus 94 ~l~M~~iA~~l~~~lgv~V~igGvEAemAi~GALTTPGt~~PlaIlDmG~GSTDAsii~~~g~v~~---iHlAGAG~mVT 170 (332)
T PF08841_consen 94 KLQMQMIADELEEELGVPVEIGGVEAEMAILGALTTPGTDKPLAILDMGGGSTDASIINRDGEVTA---IHLAGAGNMVT 170 (332)
T ss_dssp S-TCHHHHHHHHHHHTSEEEEECEHHHHHHHHHTTSTT--SSEEEEEE-SSEEEEEEE-TTS-EEE---EEEE-SHHHHH
T ss_pred cccHHHHHHHHHHHHCCceEEccccHHHHHhcccCCCCCCCCeEEEecCCCcccHHHhCCCCcEEE---EEecCCchhhH
Confidence 34446788888899999988888889998887633 2347889999999988773 444432 23445788899
Q ss_pred HHHHHHHHhcCCCCccchHHHHHHHHHHhc-ccccCCccc--c----------ccCCCCceEEECCCCcEEEeccc----
Q psy16631 192 RYLKLLLRKEGVNFRTTAEFEIVRTIKEKA-CYLSSNPVK--E----------ETTDSEKHTYVLPDGSSLDIGHA---- 254 (376)
Q Consensus 192 ~~l~~~l~~~~~~~~~~~~~~~~~~iK~~~-~~~~~~~~~--~----------~~~~~~~~~~~lpd~~~i~v~~~---- 254 (376)
..+.+-|-. .+++++|+||+.. +.|-.-+.- | ..+....+...+-++..++++..
T Consensus 171 mlI~sELGl--------~d~~lAE~IKkyPlaKVEslfhiR~EDGtv~Ffd~pl~p~~faRvvi~~~~~lvPi~~~~~lE 242 (332)
T PF08841_consen 171 MLINSELGL--------EDRELAEDIKKYPLAKVESLFHIRHEDGTVQFFDEPLDPDVFARVVILKEDGLVPIPGDLSLE 242 (332)
T ss_dssp HHHHHHCT---------S-HHHHHHHHHS-EEEEECTTEEEETTS-EEE-SS---CCCTTSEEEECTTEEEEESSTS-HH
T ss_pred HHHHHhhCC--------CCHHHHHHhhhcchhhhccceEEEecCCceEEecCCCChHHeeEEEEecCCceeecCCCccHH
Confidence 888776643 3678999999752 233221110 0 00111222222223333332110
Q ss_pred -----cccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHHhhcCeEeccCcccccCHHHHHHHHHHhhCCCCceEE
Q psy16631 255 -----RFRAPEVLFRPDLIGEESEGIHDVLYYAIQKSDLDLRKVLYQNIVLSGGSTLFKGFGDRLLAEIRKNAPKDLKIR 329 (376)
Q Consensus 255 -----r~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~Gl~~rl~~eL~~~~~~~~~i~ 329 (376)
|..+-+-. ...-+.+++.+..+.---.....+||+||+++==-+.+-+.++|.++----.+-+
T Consensus 243 kir~vRr~AK~kV------------FVtNa~RaL~~vsPtgniR~i~fVVlVGGSALDFEIp~~vtdaLs~y~iVaGRgN 310 (332)
T PF08841_consen 243 KIRSVRREAKEKV------------FVTNALRALKQVSPTGNIRDIPFVVLVGGSALDFEIPQMVTDALSHYGIVAGRGN 310 (332)
T ss_dssp HHHHHHHHHHHHH------------HHHHHHHHHCCCSTTSSCCC--EEEEESGGGGSSSHHHHHHHHHCTTT-EEEE--
T ss_pred HHHHHHHHhhhhh------------hHHHHHHHHHhcCCCCCcccCceEEEecCchhhhhhHHHHHHHHhhCcceeeccc
Confidence 00000000 1112233333332210001123589999999988889999999975421111223
Q ss_pred EeCCCCCccchhhhH
Q psy16631 330 ISAPQERLYSTWIGG 344 (376)
Q Consensus 330 v~~~~~~~~~~w~Ga 344 (376)
|-...-|.+++..|-
T Consensus 311 IrG~eGPRNAVATGL 325 (332)
T PF08841_consen 311 IRGVEGPRNAVATGL 325 (332)
T ss_dssp GGGTSTTSTHHHHHH
T ss_pred cccccCchHHHHHHH
Confidence 333445666776663
No 65
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=95.53 E-value=0.053 Score=49.35 Aligned_cols=48 Identities=31% Similarity=0.414 Sum_probs=33.8
Q ss_pred eEeccCcccccCHHHHHHHHHHhhCCCCceEEEeCCCCCccchhhhHHHhh
Q psy16631 298 IVLSGGSTLFKGFGDRLLAEIRKNAPKDLKIRISAPQERLYSTWIGGSILA 348 (376)
Q Consensus 298 Ivl~GG~s~i~Gl~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a 348 (376)
|+++||...-..+.+.|++.|.+..+.. .+..+.+|.+.+..||.++|
T Consensus 224 v~l~GGv~~~~~~~~~l~~~l~~~~~~~---~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 224 VVLSGGVFKNSPLVKALRDALKEKLPKV---PIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp EEEESGGGGCHHHHHHHGGGS-HHHHCC---TCECECCGSSHHHHHHHHHH
T ss_pred EEEECCccCchHHHHHHHHHHHHhcCCC---ceEECCCCCccHHHHHHHhC
Confidence 9999999887777777765555544422 23344468899999999886
No 66
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=95.42 E-value=0.14 Score=46.75 Aligned_cols=154 Identities=22% Similarity=0.203 Sum_probs=86.7
Q ss_pred CCCcEEEeCCCcceEEEEcCC---------CCCCeeccccceecCccccccCCCCCCeeeCcchhhccCcceeeccccCC
Q psy16631 8 VNQPVVIDNGSGVIKAGFAGD---------QVPKCCFPNYIGRPKHIRVMAGALEGDIFVGPKAEEHRGLLSIHYPMEHG 78 (376)
Q Consensus 8 ~~~~vViD~Gs~~~k~G~a~~---------~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g 78 (376)
.-..|-||+|+.++.+=|+-= ..|+..|-. +++.+- +. -++-|+...
T Consensus 4 ~ilSVGIDiGTsTTQvifS~lel~Nmas~~~VPri~ii~----------------kdi~~r-------S~-i~FTPv~~q 59 (473)
T COG4819 4 QILSVGIDIGTSTTQVIFSKLELVNMASVSQVPRIEIIK----------------KDISWR-------SP-IFFTPVDKQ 59 (473)
T ss_pred eeeeeeeeccCceeeeeeeeeEEeecccccccceEEEEe----------------cceeee-------cc-eeeeeeccc
Confidence 345789999999999877631 223322210 111111 11 134566655
Q ss_pred cccCHHHHHHHHHHhhcCccCCCCCCC---CcEEEEeCCCCChHhHHHHHHHhhcc---cCCCceecchhhhhhhhhcC-
Q psy16631 79 IITDWNDMERIWQYVYSNDQLQTFSEE---HPVLLTEAPLNPRRNREKAAEIFFES---FNVPALYVSMQAVLSLYATG- 151 (376)
Q Consensus 79 ~i~d~~~~~~~l~~~~~~~~l~~~~~~---~~vvl~~~~~~~~~~r~~~~~~lfe~---~~~~~v~~~~~~~~a~~~~g- 151 (376)
--.|.++++.+...=+.+ -++.|+. -.++++-...-.+..|..+ ..+-.. |=+...--..+++.|--++|
T Consensus 60 ~~id~~alk~~v~eeY~~--AGi~pesi~sGAvIITGEtArk~NA~~vl-~alSg~aGDFVVAtAGPdLESiIAGkGaGA 136 (473)
T COG4819 60 GGIDEAALKKLVLEEYQA--AGIAPESIDSGAVIITGETARKRNARPVL-MALSGSAGDFVVATAGPDLESIIAGKGAGA 136 (473)
T ss_pred CCccHHHHHHHHHHHHHH--cCCChhccccccEEEeccccccccchHHH-HHhhhcccceEEEecCCCHHHHhccCCccc
Confidence 555777888887766643 5666653 4677775554444444422 222221 21222222223333333333
Q ss_pred ------CceE-EEEecCCCceEEEEeeCCeeccccceeecccHHHH
Q psy16631 152 ------RTTG-VVLDSGDGVTHAVPIYEGFAMPHSIMRNDIAGRDV 190 (376)
Q Consensus 152 ------~~tg-lVVDiG~~~t~i~pv~dG~~~~~~~~~~~~GG~~l 190 (376)
+.++ +=+|||.++|.++-+-.|.+...++ +++||+-+
T Consensus 137 ~t~Seqr~t~v~NlDIGGGTtN~slFD~Gkv~dTaC--LdiGGRLi 180 (473)
T COG4819 137 QTLSEQRLTRVLNLDIGGGTTNYSLFDAGKVSDTAC--LDIGGRLI 180 (473)
T ss_pred cchhhhhceEEEEEeccCCccceeeeccccccccee--eecCcEEE
Confidence 2233 3469999999999999999988765 67999754
No 67
>PRK13317 pantothenate kinase; Provisional
Probab=95.13 E-value=0.3 Score=44.59 Aligned_cols=71 Identities=20% Similarity=0.125 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHhCCHH-HHHHhhcCeEecc-CcccccCHHHHHHHHHHhhCCCCceEEEeCCCCCccchhhhHHHhhc
Q psy16631 274 GIHDVLYYAIQKSDLD-LRKVLYQNIVLSG-GSTLFKGFGDRLLAEIRKNAPKDLKIRISAPQERLYSTWIGGSILAS 349 (376)
Q Consensus 274 ~l~~~I~~~i~~~~~d-~r~~l~~nIvl~G-G~s~i~Gl~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~ 349 (376)
+|..+|.+.|..+..- .|..-.++|+++| |.+..|++.++|.+.+.. ...++..++++++..-+||++++.
T Consensus 201 sl~~~v~~~I~~lA~~~ar~~~~~~Ivf~G~gla~n~~l~~~l~~~l~~-----~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 201 GVIGLVGEVITTLSIQAAREKNIENIVYIGSTLTNNPLLQEIIESYTKL-----RNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEEECcccccCHHHHHHHHHHHhc-----CCceEEecCCCchhHHHHHHHHhh
Confidence 4555555555443221 1333447999999 799999999999987752 134667788899999999998874
No 68
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.03 E-value=0.082 Score=52.02 Aligned_cols=75 Identities=16% Similarity=0.079 Sum_probs=47.2
Q ss_pred ChHhHHHHHHHhhcccCCCceec--chhhhhhhhh----cC-CceEEEEecCCCceEEEEeeCCeeccccceeecccHHH
Q psy16631 117 PRRNREKAAEIFFESFNVPALYV--SMQAVLSLYA----TG-RTTGVVLDSGDGVTHAVPIYEGFAMPHSIMRNDIAGRD 189 (376)
Q Consensus 117 ~~~~r~~~~~~lfe~~~~~~v~~--~~~~~~a~~~----~g-~~tglVVDiG~~~t~i~pv~dG~~~~~~~~~~~~GG~~ 189 (376)
...+...+.+.+-+.+|++-=.+ -.++-++.+| .+ ...++|+|||+++|.++-+-+..+... ..+++|.-.
T Consensus 86 ~A~N~~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~~~~~~~~lv~DIGGGStEl~~g~~~~~~~~--~Sl~~G~v~ 163 (492)
T COG0248 86 DAPNGDEFLARVEKELGLPIEVISGEEEARLIYLGVASTLPRKGDGLVIDIGGGSTELVLGDNFEIGLL--ISLPLGCVR 163 (492)
T ss_pred cCCCHHHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhcCCCCCCEEEEEecCCeEEEEEecCCcccee--EEeecceEE
Confidence 34455667777777777753222 2233333332 23 678999999999999998876655543 357888755
Q ss_pred HHHH
Q psy16631 190 VTRY 193 (376)
Q Consensus 190 l~~~ 193 (376)
+++.
T Consensus 164 lt~~ 167 (492)
T COG0248 164 LTER 167 (492)
T ss_pred eehh
Confidence 5543
No 69
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=95.03 E-value=0.14 Score=50.91 Aligned_cols=79 Identities=18% Similarity=0.083 Sum_probs=52.1
Q ss_pred CCCCChHhHHHHHHHhhcccCCCc--eecchhhhhhhhhc-----CCceEEEEecCCCceEEEEeeCCeeccccceeecc
Q psy16631 113 APLNPRRNREKAAEIFFESFNVPA--LYVSMQAVLSLYAT-----GRTTGVVLDSGDGVTHAVPIYEGFAMPHSIMRNDI 185 (376)
Q Consensus 113 ~~~~~~~~r~~~~~~lfe~~~~~~--v~~~~~~~~a~~~~-----g~~tglVVDiG~~~t~i~pv~dG~~~~~~~~~~~~ 185 (376)
...-...+++.+++.+.+..|++- +.=-.++-+..+|. ...+++|+|||+++|.++.+-+|.+... ..+++
T Consensus 85 sAvReA~N~~~fl~~i~~~tGl~ievIsG~eEA~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~~~--~Sl~l 162 (496)
T PRK11031 85 ATLRLAVNADEFLAKAQEILGCPVQVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGTGAQATSL--FSLSM 162 (496)
T ss_pred HHHHcCcCHHHHHHHHHHHHCCCeEEeCHHHHHHHHHHhhhhccCCCCCEEEEEecCCeeeEEEecCCceeee--eEEec
Confidence 444456677888888888877752 22222222222221 1235899999999999999988887653 46899
Q ss_pred cHHHHHHH
Q psy16631 186 AGRDVTRY 193 (376)
Q Consensus 186 GG~~l~~~ 193 (376)
|.-.+++.
T Consensus 163 G~vrl~e~ 170 (496)
T PRK11031 163 GCVTWLER 170 (496)
T ss_pred cchHHHHH
Confidence 98776643
No 70
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=94.94 E-value=0.068 Score=49.47 Aligned_cols=79 Identities=18% Similarity=0.097 Sum_probs=52.7
Q ss_pred CCCCChHhHHHHHHHhhcccCCCceecchh---hhhhhhh----cCCceEEEEecCCCceEEEEeeCCeeccccceeecc
Q psy16631 113 APLNPRRNREKAAEIFFESFNVPALYVSMQ---AVLSLYA----TGRTTGVVLDSGDGVTHAVPIYEGFAMPHSIMRNDI 185 (376)
Q Consensus 113 ~~~~~~~~r~~~~~~lfe~~~~~~v~~~~~---~~~a~~~----~g~~tglVVDiG~~~t~i~pv~dG~~~~~~~~~~~~ 185 (376)
..+-....++.+++.+.+..|++ +.++.. +.+...+ ....+++++|+|+++|.++.+.+|.+... ..+|+
T Consensus 79 sa~R~A~N~~~~~~~i~~~tgi~-i~visg~eEa~l~~~gv~~~~~~~~~~v~DiGGGSte~~~~~~~~~~~~--~Sl~l 155 (300)
T TIGR03706 79 AALRDAKNGPEFLREAEAILGLP-IEVISGEEEARLIYLGVAHTLPIADGLVVDIGGGSTELILGKDFEPGEG--VSLPL 155 (300)
T ss_pred HHHHcCCCHHHHHHHHHHHHCCC-eEEeChHHHHHHHHHHHHhCCCCCCcEEEEecCCeEEEEEecCCCEeEE--EEEcc
Confidence 44445567788888888777764 223332 2222222 12245799999999999999988877643 46899
Q ss_pred cHHHHHHHH
Q psy16631 186 AGRDVTRYL 194 (376)
Q Consensus 186 GG~~l~~~l 194 (376)
|.-.+++.+
T Consensus 156 G~vrl~e~f 164 (300)
T TIGR03706 156 GCVRLTEQF 164 (300)
T ss_pred ceEEhHHhh
Confidence 988777654
No 71
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=94.84 E-value=0.27 Score=45.62 Aligned_cols=30 Identities=23% Similarity=0.356 Sum_probs=26.5
Q ss_pred hcCCceEEEEecCCCceEEEEeeCCeeccc
Q psy16631 149 ATGRTTGVVLDSGDGVTHAVPIYEGFAMPH 178 (376)
Q Consensus 149 ~~g~~tglVVDiG~~~t~i~pv~dG~~~~~ 178 (376)
+....+++.+|+|+.+|+|+||.+|.+...
T Consensus 124 a~~~~~~I~~DmGGTTtDi~~i~~G~p~~~ 153 (318)
T TIGR03123 124 AKRIPECLFVDMGSTTTDIIPIIDGEVAAK 153 (318)
T ss_pred HhcCCCEEEEEcCccceeeEEecCCEeeee
Confidence 345788999999999999999999999865
No 72
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=94.76 E-value=3.3 Score=38.49 Aligned_cols=52 Identities=17% Similarity=0.168 Sum_probs=39.9
Q ss_pred HHHHhhcccCCCceecchhhhhhhhhc-------CCceEEEEecCCCceEEEEeeCCeecc
Q psy16631 124 AAEIFFESFNVPALYVSMQAVLSLYAT-------GRTTGVVLDSGDGVTHAVPIYEGFAMP 177 (376)
Q Consensus 124 ~~~~lfe~~~~~~v~~~~~~~~a~~~~-------g~~tglVVDiG~~~t~i~pv~dG~~~~ 177 (376)
+.+.+=+.+++| |++.++.-+++++. +..+.++|.+|.+. ....|.+|++..
T Consensus 89 l~~~l~~~~~~p-v~v~NDa~~~alaE~~~g~~~~~~~~~~v~igtGi-G~giv~~G~~~~ 147 (318)
T TIGR00744 89 LKEKVEARVGLP-VVVENDANAAALGEYKKGAGKGARDVICITLGTGL-GGGIIINGEIRH 147 (318)
T ss_pred HHHHHHHHHCCC-EEEechHHHHHHHHHHhcccCCCCcEEEEEeCCcc-EEEEEECCEEee
Confidence 555666778887 77889888887732 45789999999875 677778998776
No 73
>PRK09557 fructokinase; Reviewed
Probab=94.73 E-value=2.1 Score=39.46 Aligned_cols=53 Identities=15% Similarity=0.041 Sum_probs=37.0
Q ss_pred HHHHhhcccCCCceecchhhhhhhhhc-------CCceEEEEecCCCceEEEEeeCCeeccc
Q psy16631 124 AAEIFFESFNVPALYVSMQAVLSLYAT-------GRTTGVVLDSGDGVTHAVPIYEGFAMPH 178 (376)
Q Consensus 124 ~~~~lfe~~~~~~v~~~~~~~~a~~~~-------g~~tglVVDiG~~~t~i~pv~dG~~~~~ 178 (376)
+.+.+-+.|++| |.+.++.-|++++. +..+.+.+.+|.+ .-..-|.||.++..
T Consensus 88 l~~~l~~~~~~p-v~~~NDa~aaA~aE~~~g~~~~~~~~~~l~igtG-iG~giv~~G~l~~G 147 (301)
T PRK09557 88 LDKDLSARLNRE-VRLANDANCLAVSEAVDGAAAGKQTVFAVIIGTG-CGAGVAINGRVHIG 147 (301)
T ss_pred HHHHHHHHHCCC-EEEccchhHHHHHHHHhcccCCCCcEEEEEEccc-eEEEEEECCEEEec
Confidence 445555667887 77889888887653 2467778888854 56666778887653
No 74
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=94.66 E-value=0.17 Score=44.63 Aligned_cols=23 Identities=26% Similarity=0.556 Sum_probs=21.3
Q ss_pred CceEEEEecCCCceEEEEeeCCe
Q psy16631 152 RTTGVVLDSGDGVTHAVPIYEGF 174 (376)
Q Consensus 152 ~~tglVVDiG~~~t~i~pv~dG~ 174 (376)
..+++.||+|+.+|+|+||.+|.
T Consensus 129 ~dsci~VD~GSTTtDIIPi~~ge 151 (330)
T COG1548 129 KDSCILVDMGSTTTDIIPIKDGE 151 (330)
T ss_pred CCceEEEecCCcccceEeecchh
Confidence 46799999999999999999996
No 75
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=94.06 E-value=4.6 Score=36.81 Aligned_cols=68 Identities=13% Similarity=-0.001 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHhCCH-HHHHHhhcCeEeccC-cccccCHHHHHHHHHHhhCCCCceEEEeCCCCCccchhhhHHH
Q psy16631 274 GIHDVLYYAIQKSDL-DLRKVLYQNIVLSGG-STLFKGFGDRLLAEIRKNAPKDLKIRISAPQERLYSTWIGGSI 346 (376)
Q Consensus 274 ~l~~~I~~~i~~~~~-d~r~~l~~nIvl~GG-~s~i~Gl~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi 346 (376)
+|..+|.+.|..+.. --+..-.++|+++|| ....|.+.+++.+-+.- +..++.-+.+..+...+||.+
T Consensus 209 SLl~mV~~nIg~lA~~~a~~~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~-----~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 209 SLLGLIGNNIGQIAYLCALRYNIDRIVFIGSFLRNNQLLMKVLSYATNF-----WSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCeEEEECCcccCCHHHHHHHHHHHhh-----cCceEEEECCcchHHHhhhcc
Confidence 566666666654422 123445788999999 77889999999877642 235666667777888888764
No 76
>PRK10854 exopolyphosphatase; Provisional
Probab=93.44 E-value=0.29 Score=48.88 Aligned_cols=78 Identities=14% Similarity=0.046 Sum_probs=50.2
Q ss_pred CCCCChHhHHHHHHHhhcccCCCc--eecchhhhhhhhhc-----CCceEEEEecCCCceEEEEeeCCeeccccceeecc
Q psy16631 113 APLNPRRNREKAAEIFFESFNVPA--LYVSMQAVLSLYAT-----GRTTGVVLDSGDGVTHAVPIYEGFAMPHSIMRNDI 185 (376)
Q Consensus 113 ~~~~~~~~r~~~~~~lfe~~~~~~--v~~~~~~~~a~~~~-----g~~tglVVDiG~~~t~i~pv~dG~~~~~~~~~~~~ 185 (376)
...-...++..+++.+.+..|++- +.=..++-+...|. ...+++|||||+++|.++-+-+|.+... ...++
T Consensus 90 sAlReA~N~~~fl~~i~~~tGl~i~vIsG~EEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~~~~~~~~--~S~~l 167 (513)
T PRK10854 90 HTLRQALNATDFLKRAEKVIPYPIEIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFEPILV--ESRRM 167 (513)
T ss_pred HHHHcCcCHHHHHHHHHHHHCCCeEEeCHHHHHHHHHhhhhcccCCCCCeEEEEeCCCeEEEEEecCCCeeEe--EEEec
Confidence 444455667888888888877752 22122222222221 1246899999999999999998876543 24588
Q ss_pred cHHHHHH
Q psy16631 186 AGRDVTR 192 (376)
Q Consensus 186 GG~~l~~ 192 (376)
|.-.+++
T Consensus 168 G~vrl~e 174 (513)
T PRK10854 168 GCVSFAQ 174 (513)
T ss_pred ceeeHHh
Confidence 8766665
No 77
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=93.17 E-value=0.38 Score=37.87 Aligned_cols=59 Identities=19% Similarity=0.171 Sum_probs=41.4
Q ss_pred EEEecCCCceEEEEeeCCeeccccceeeccc--------HHHHH--HHHHHHHHhcCCCCccchHHHHHHHH-HHhcccc
Q psy16631 156 VVLDSGDGVTHAVPIYEGFAMPHSIMRNDIA--------GRDVT--RYLKLLLRKEGVNFRTTAEFEIVRTI-KEKACYL 224 (376)
Q Consensus 156 lVVDiG~~~t~i~pv~dG~~~~~~~~~~~~G--------G~~l~--~~l~~~l~~~~~~~~~~~~~~~~~~i-K~~~~~~ 224 (376)
++||+|+++|.++...+|.... ...+++| +.+++ +.+.+.++. ..+.+|.+ |.++..+
T Consensus 2 ~~iDiGs~~~~~~i~~~~~~~~--~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~~---------a~~~AE~~~k~~i~~v 70 (120)
T PF14450_consen 2 VVIDIGSSKTKVAIAEDGSDGY--IRVLGVGEVPSKGIKGGHITDIEDISKAIKI---------AIEEAERLAKCEIGSV 70 (120)
T ss_dssp EEEEE-SSSEEEEEEETTEEEE--EEEES----------HHHHH--HHHHHHHT-----------HHHHHHH-HHHH--S
T ss_pred EEEEcCCCcEEEEEEEeCCCCc--EEEEEEecccccccCCCEEEEHHHHHHHHHH---------HHHHHHHHhCCeeeEE
Confidence 6899999999999998887765 4568899 99999 888887764 33667777 8776654
Q ss_pred c
Q psy16631 225 S 225 (376)
Q Consensus 225 ~ 225 (376)
.
T Consensus 71 ~ 71 (120)
T PF14450_consen 71 Y 71 (120)
T ss_dssp -
T ss_pred E
Confidence 3
No 78
>PRK03011 butyrate kinase; Provisional
Probab=92.60 E-value=6.9 Score=37.16 Aligned_cols=47 Identities=17% Similarity=0.203 Sum_probs=32.2
Q ss_pred cCeEeccCcccccCHHHHHHHHHHhhCCCCceEEEeCCCCCccchhhhHHH
Q psy16631 296 QNIVLSGGSTLFKGFGDRLLAEIRKNAPKDLKIRISAPQERLYSTWIGGSI 346 (376)
Q Consensus 296 ~nIvl~GG~s~i~Gl~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi 346 (376)
+-|||+||.+.-+-|.+++++.+..+ .++.|........+.-.||.-
T Consensus 297 D~IVlgGGI~~~~~l~~~I~~~l~~~----~pv~i~p~~~e~~A~a~GA~r 343 (358)
T PRK03011 297 DAIVLTGGLAYSKRLVERIKERVSFI----APVIVYPGEDEMEALAEGALR 343 (358)
T ss_pred CEEEEeCccccCHHHHHHHHHHHHhh----CCeEEEeCCCHHHHHHHHHHH
Confidence 46999999987666777777777654 357777766554555566543
No 79
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=91.58 E-value=0.18 Score=46.35 Aligned_cols=33 Identities=24% Similarity=0.253 Sum_probs=23.3
Q ss_pred hhh-hcCCceEEEEecCCCceEEEEeeCCeeccc
Q psy16631 146 SLY-ATGRTTGVVLDSGDGVTHAVPIYEGFAMPH 178 (376)
Q Consensus 146 a~~-~~g~~tglVVDiG~~~t~i~pv~dG~~~~~ 178 (376)
+++ ..+..+++++|+|..+|+|.++.||.+...
T Consensus 69 a~~~~~g~~~~i~vDmGGTTtDi~~i~~G~p~~~ 102 (290)
T PF01968_consen 69 AAARLTGLENAIVVDMGGTTTDIALIKDGRPEIS 102 (290)
T ss_dssp HHH--HT-SSEEEEEE-SS-EEEEEEETTEE---
T ss_pred hhhhcCCCCCEEEEeCCCCEEEEEEEECCeeecc
Confidence 344 557889999999999999999999999743
No 80
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=91.26 E-value=0.3 Score=43.57 Aligned_cols=160 Identities=16% Similarity=0.147 Sum_probs=83.9
Q ss_pred ceEEEEecCCCceEEEEeeCCeeccccceee----cccHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHhcccccCCc
Q psy16631 153 TTGVVLDSGDGVTHAVPIYEGFAMPHSIMRN----DIAGRDVTRYLKLLLRKEGVNFRTTAEFEIVRTIKEKACYLSSNP 228 (376)
Q Consensus 153 ~tglVVDiG~~~t~i~pv~dG~~~~~~~~~~----~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~ 228 (376)
-+-+.|.+|...|.++.|.+|+++..-.-+. ..||-.++..+.-.|...-..++... -++--.+|+.-
T Consensus 163 ~nfIavE~G~aytaavaV~nGkIVDGmgGttgf~gylg~g~MD~ElAYaLa~~~~~fsK~~------lf~gGa~~i~g-- 234 (374)
T COG2441 163 VNFIAVEIGFAYTAAVAVKNGKIVDGMGGTTGFTGYLGGGAMDGELAYALANYLERFSKSL------LFEGGAAYIAG-- 234 (374)
T ss_pred hhhHHHhhhccceeEEEEECCEEEeccCCccCcccccccccccHHHHHHHHHhhhhccHhh------eeccccccccc--
Confidence 4568899999999999999999997533333 45665666666665553211111000 00000001000
Q ss_pred cccccCCCCceEEECCCCcEEEeccccccccccccCCCCCCC--C-CCCHHHHHHHHHHhCCHHHHHHhhcCeEeccCcc
Q psy16631 229 VKEETTDSEKHTYVLPDGSSLDIGHARFRAPEVLFRPDLIGE--E-SEGIHDVLYYAIQKSDLDLRKVLYQNIVLSGGST 305 (376)
Q Consensus 229 ~~~~~~~~~~~~~~lpd~~~i~v~~~r~~~~E~lF~p~~~~~--~-~~~l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s 305 (376)
+ ..||-|-.-..-+. + -.-|.+.+.+.+..+-++.++. -|+|+|-.+
T Consensus 235 ----------------------v-----~sp~ef~~~ake~enle~~~~l~e~vvK~v~tllps~~pd---~iylSGrf~ 284 (374)
T COG2441 235 ----------------------V-----DSPEEFVKLAKEDENLETYNALIEGVVKDVFTLLPSTYPD---AIYLSGRFS 284 (374)
T ss_pred ----------------------C-----CCHHHHHHHhhcccchHHHHHHHHHHHHHHHHhccccCcc---eEEEeeecc
Confidence 0 00000000000000 0 0135666666666554333322 399999999
Q ss_pred cccCHHHHHHHHHHhhCCC---CceEEEeCCCCCccchhhhHHHhhcc
Q psy16631 306 LFKGFGDRLLAEIRKNAPK---DLKIRISAPQERLYSTWIGGSILASL 350 (376)
Q Consensus 306 ~i~Gl~~rl~~eL~~~~~~---~~~i~v~~~~~~~~~~w~Gasi~a~l 350 (376)
.+|-|-.-+++.|+..... ...++....--....+..||+++|+-
T Consensus 285 ~~~~~~~dv~~~l~d~~s~~g~~~evr~le~~~K~KeaA~GaAiiAna 332 (374)
T COG2441 285 RIPRFFSDVKEKLRDAFSSYGFGIEVRKLESRAKAKEAAEGAAIIANA 332 (374)
T ss_pred cccchhhHHHHHHHHHHhhcCccceeehhhhhhhhhhhccchhhhhhh
Confidence 9999877777777754432 22333333322334577888888864
No 81
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=90.61 E-value=0.53 Score=43.17 Aligned_cols=80 Identities=19% Similarity=0.223 Sum_probs=52.5
Q ss_pred CCCCChHhHHHHHHHhhcccCCCceecc--hhhhhh----hhhc-CCceEEEEecCCCceEEEEeeCCeeccccceeecc
Q psy16631 113 APLNPRRNREKAAEIFFESFNVPALYVS--MQAVLS----LYAT-GRTTGVVLDSGDGVTHAVPIYEGFAMPHSIMRNDI 185 (376)
Q Consensus 113 ~~~~~~~~r~~~~~~lfe~~~~~~v~~~--~~~~~a----~~~~-g~~tglVVDiG~~~t~i~pv~dG~~~~~~~~~~~~ 185 (376)
..+-...++..+++.+.+..|++--.+- .++.+. ..+. ...+++|+|+|+++|.++.+.+|.+... ..+|+
T Consensus 65 sA~R~A~N~~~~~~~i~~~tGi~i~iIsgeeEa~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~~~--~Sl~l 142 (285)
T PF02541_consen 65 SALREAKNSDEFLDRIKKETGIDIEIISGEEEARLSFLGVLSSLPPDKNGLVIDIGGGSTELILFENGKVVFS--QSLPL 142 (285)
T ss_dssp HHHHHSTTHHHHHHHHHHHHSS-EEEE-HHHHHHHHHHHHHHHSTTTSSEEEEEEESSEEEEEEEETTEEEEE--EEES-
T ss_pred HHHHhCcCHHHHHHHHHHHhCCceEEecHHHHHHHHHHHHHhhccccCCEEEEEECCCceEEEEEECCeeeEe--eeeeh
Confidence 3343456677888888888887522221 112211 1122 5688999999999999999999988764 46899
Q ss_pred cHHHHHHHH
Q psy16631 186 AGRDVTRYL 194 (376)
Q Consensus 186 GG~~l~~~l 194 (376)
|.-.+++.+
T Consensus 143 G~vrl~e~~ 151 (285)
T PF02541_consen 143 GAVRLTERF 151 (285)
T ss_dssp -HHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998877655
No 82
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=90.36 E-value=3.5 Score=36.89 Aligned_cols=20 Identities=20% Similarity=0.144 Sum_probs=16.8
Q ss_pred cEEEeCCCcceEEEEcCCCC
Q psy16631 11 PVVIDNGSGVIKAGFAGDQV 30 (376)
Q Consensus 11 ~vViD~Gs~~~k~G~a~~~~ 30 (376)
-++||+|.++++.|+..+..
T Consensus 2 ~L~iDiGNT~~~~a~~~~~~ 21 (251)
T COG1521 2 LLLIDIGNTRIVFALYEGGK 21 (251)
T ss_pred eEEEEeCCCeEEEEEecCCe
Confidence 47899999999999987543
No 83
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=88.31 E-value=7 Score=36.52 Aligned_cols=49 Identities=20% Similarity=0.363 Sum_probs=36.2
Q ss_pred CeEeccCcccccCHHHHHHHHHHhhCCCCceEEEeCC---CCCccchhhhHHHhhc
Q psy16631 297 NIVLSGGSTLFKGFGDRLLAEIRKNAPKDLKIRISAP---QERLYSTWIGGSILAS 349 (376)
Q Consensus 297 nIvl~GG~s~i~Gl~~rl~~eL~~~~~~~~~i~v~~~---~~~~~~~w~Gasi~a~ 349 (376)
-|+|+|-.+.++.|.+.+.+.|....+ +++... .-..-.+-.|++++|+
T Consensus 263 ~IilSGr~~~~~~~~~~l~~~l~~~~~----~~v~~l~~~~~~aKeaA~GaAiIA~ 314 (343)
T PF07318_consen 263 EIILSGRFSRIPEFRKKLEDRLEDYFP----VKVRKLEGLARKAKEAAQGAAIIAN 314 (343)
T ss_pred EEEEeccccccHHHHHHHHHHHHhhcc----cceeecccccccchhhhhhHHHHhh
Confidence 399999999999999999999988765 222211 1112357899999885
No 84
>PRK13324 pantothenate kinase; Reviewed
Probab=87.97 E-value=7.2 Score=35.17 Aligned_cols=19 Identities=26% Similarity=0.406 Sum_probs=16.1
Q ss_pred cEEEeCCCcceEEEEcCCC
Q psy16631 11 PVVIDNGSGVIKAGFAGDQ 29 (376)
Q Consensus 11 ~vViD~Gs~~~k~G~a~~~ 29 (376)
.+.||+|-.++|.|+..++
T Consensus 2 iL~iDiGNT~ik~gl~~~~ 20 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDGD 20 (258)
T ss_pred EEEEEeCCCceEEEEEECC
Confidence 4789999999999987643
No 85
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=87.47 E-value=20 Score=33.94 Aligned_cols=25 Identities=16% Similarity=0.271 Sum_probs=21.1
Q ss_pred eEEEEecCCCceEEEEeeCCeecccc
Q psy16631 154 TGVVLDSGDGVTHAVPIYEGFAMPHS 179 (376)
Q Consensus 154 tglVVDiG~~~t~i~pv~dG~~~~~~ 179 (376)
+-+++.+|.+.. +..|.||+++..+
T Consensus 175 ~~I~~hLGtGig-~~ai~~Gk~vdgs 199 (351)
T TIGR02707 175 NLIVAHMGGGIS-VAAHRKGRVIDVN 199 (351)
T ss_pred CEEEEEeCCCce-eeeEECCEEEEcC
Confidence 789999999855 8889999997654
No 86
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=86.97 E-value=7.8 Score=34.61 Aligned_cols=18 Identities=22% Similarity=0.333 Sum_probs=15.8
Q ss_pred EEEeCCCcceEEEEcCCC
Q psy16631 12 VVIDNGSGVIKAGFAGDQ 29 (376)
Q Consensus 12 vViD~Gs~~~k~G~a~~~ 29 (376)
++||+|-.++|+|+..++
T Consensus 2 L~iDiGNT~i~~g~~~~~ 19 (243)
T TIGR00671 2 LLIDVGNTRIVFALNSGN 19 (243)
T ss_pred EEEEECCCcEEEEEEECC
Confidence 689999999999987654
No 87
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=84.20 E-value=2.2 Score=37.04 Aligned_cols=18 Identities=28% Similarity=0.350 Sum_probs=15.1
Q ss_pred EEEeCCCcceEEEEcCCC
Q psy16631 12 VVIDNGSGVIKAGFAGDQ 29 (376)
Q Consensus 12 vViD~Gs~~~k~G~a~~~ 29 (376)
++||+|-.++|.|+..++
T Consensus 2 L~iDiGNT~ik~~~~~~~ 19 (206)
T PF03309_consen 2 LLIDIGNTRIKWALFDGD 19 (206)
T ss_dssp EEEEE-SSEEEEEEEETT
T ss_pred EEEEECCCeEEEEEEECC
Confidence 789999999999998665
No 88
>PRK00976 hypothetical protein; Provisional
Probab=80.72 E-value=15 Score=34.18 Aligned_cols=33 Identities=15% Similarity=0.032 Sum_probs=27.0
Q ss_pred hhhhhhcCCceEEEEecCCCceEEEEeeCCeecc
Q psy16631 144 VLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMP 177 (376)
Q Consensus 144 ~~a~~~~g~~tglVVDiG~~~t~i~pv~dG~~~~ 177 (376)
.+|.+-++..+-+|+|+|+ +|....|-||+++-
T Consensus 140 ~~a~~~~~~~~fi~~diss-ntv~~~V~~gkIvg 172 (326)
T PRK00976 140 YNAYKLFGFENFIVSDISS-NTVTLLVKDGKIVG 172 (326)
T ss_pred HHHHhhcCCCcEEEEeccc-cEEEEEEECCEEEc
Confidence 3344456889999999999 88888999999875
No 89
>PRK13321 pantothenate kinase; Reviewed
Probab=80.71 E-value=20 Score=32.19 Aligned_cols=18 Identities=33% Similarity=0.479 Sum_probs=16.0
Q ss_pred EEEeCCCcceEEEEcCCC
Q psy16631 12 VVIDNGSGVIKAGFAGDQ 29 (376)
Q Consensus 12 vViD~Gs~~~k~G~a~~~ 29 (376)
+.||+|..++|+|+..++
T Consensus 3 L~IDIGnT~ik~gl~~~~ 20 (256)
T PRK13321 3 LLIDVGNTNIKLGVFDGD 20 (256)
T ss_pred EEEEECCCeEEEEEEECC
Confidence 789999999999998754
No 90
>PRK13318 pantothenate kinase; Reviewed
Probab=80.21 E-value=25 Score=31.64 Aligned_cols=18 Identities=22% Similarity=0.213 Sum_probs=15.8
Q ss_pred cEEEeCCCcceEEEEcCC
Q psy16631 11 PVVIDNGSGVIKAGFAGD 28 (376)
Q Consensus 11 ~vViD~Gs~~~k~G~a~~ 28 (376)
.+.||+|..++|+|+..+
T Consensus 2 iL~IDIGnT~iK~al~d~ 19 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYEG 19 (258)
T ss_pred EEEEEECCCcEEEEEEEC
Confidence 478999999999999864
No 91
>PRK13326 pantothenate kinase; Reviewed
Probab=76.92 E-value=40 Score=30.46 Aligned_cols=19 Identities=26% Similarity=0.394 Sum_probs=17.1
Q ss_pred cEEEeCCCcceEEEEcCCC
Q psy16631 11 PVVIDNGSGVIKAGFAGDQ 29 (376)
Q Consensus 11 ~vViD~Gs~~~k~G~a~~~ 29 (376)
.++||+|-.++|+|+..++
T Consensus 8 ~L~IDiGNT~ik~glf~~~ 26 (262)
T PRK13326 8 QLIIDIGNTSISFALYKDN 26 (262)
T ss_pred EEEEEeCCCeEEEEEEECC
Confidence 5899999999999998765
No 92
>PRK13320 pantothenate kinase; Reviewed
Probab=70.42 E-value=80 Score=28.20 Aligned_cols=19 Identities=26% Similarity=0.291 Sum_probs=16.6
Q ss_pred cEEEeCCCcceEEEEcCCC
Q psy16631 11 PVVIDNGSGVIKAGFAGDQ 29 (376)
Q Consensus 11 ~vViD~Gs~~~k~G~a~~~ 29 (376)
.+.||+|..++|.|+..++
T Consensus 4 ~L~iDiGNT~ik~~~~~~~ 22 (244)
T PRK13320 4 NLVIDIGNTTTKLAVFEGD 22 (244)
T ss_pred EEEEEeCCCcEEEEEEECC
Confidence 6899999999999988653
No 93
>PRK13331 pantothenate kinase; Reviewed
Probab=64.58 E-value=19 Score=32.32 Aligned_cols=22 Identities=14% Similarity=0.240 Sum_probs=18.7
Q ss_pred CCCcEEEeCCCcceEEEEcCCC
Q psy16631 8 VNQPVVIDNGSGVIKAGFAGDQ 29 (376)
Q Consensus 8 ~~~~vViD~Gs~~~k~G~a~~~ 29 (376)
....++||+|-.++++|+..++
T Consensus 6 ~~~~L~iDiGNT~~~~g~f~~~ 27 (251)
T PRK13331 6 SNEWLALMIGNSRLHWGYFSGE 27 (251)
T ss_pred CCcEEEEEeCCCcEEEEEEECC
Confidence 3457999999999999998764
No 94
>KOG2708|consensus
Probab=64.06 E-value=47 Score=29.23 Aligned_cols=51 Identities=24% Similarity=0.155 Sum_probs=35.2
Q ss_pred cCCceEEEEecCCCceEEEEeeCCeeccccceeecccHHHHHHHHHHHHHhc
Q psy16631 150 TGRTTGVVLDSGDGVTHAVPIYEGFAMPHSIMRNDIAGRDVTRYLKLLLRKE 201 (376)
Q Consensus 150 ~g~~tglVVDiG~~~t~i~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~ 201 (376)
+|.++.+|+=+..++|+|+.+.+.+--.-+ .++++.=-++.+.+.+.|+..
T Consensus 121 TgA~nPvvLYvSGGNTQvIAYse~rYrIFG-ETlDIAvGNClDRFAR~lkls 171 (336)
T KOG2708|consen 121 TGAQNPVVLYVSGGNTQVIAYSEKRYRIFG-ETLDIAVGNCLDRFARVLKLS 171 (336)
T ss_pred ccCCCCEEEEEeCCceEEEEEccceeeeec-ceehhhhhhhHHHHHHHhcCC
Confidence 456788999999999999999988654322 245554335556666676654
No 95
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=62.48 E-value=26 Score=31.36 Aligned_cols=67 Identities=16% Similarity=0.175 Sum_probs=44.7
Q ss_pred cccCCCceecchhhhhhhhhc-------CCceEEEEecCCCceEEEEeeCCeecc--ccceeecccHHHHHHHHHHHH
Q psy16631 130 ESFNVPALYVSMQAVLSLYAT-------GRTTGVVLDSGDGVTHAVPIYEGFAMP--HSIMRNDIAGRDVTRYLKLLL 198 (376)
Q Consensus 130 e~~~~~~v~~~~~~~~a~~~~-------g~~tglVVDiG~~~t~i~pv~dG~~~~--~~~~~~~~GG~~l~~~l~~~l 198 (376)
...+... .+++...||.+|. .....+|||+|-+.|-.+.|.+|++.- ..- +.-+....+.+++.++-
T Consensus 138 ~~~~~~~-~vmDTg~AAvlGal~d~~v~~~~~~~~vniGN~HTlaa~v~~~rI~GvfEHH-T~~l~~~kL~~~l~~l~ 213 (254)
T PF08735_consen 138 GGAGYDE-VVMDTGPAAVLGALCDPEVSSREGIIVVNIGNGHTLAALVKDGRIYGVFEHH-TGMLTPEKLEEYLERLR 213 (254)
T ss_pred ccCCCCc-eEecCHHHHHhhhhcChhhhccCCeEEEEeCCccEEEEEEeCCEEEEEEecc-cCCCCHHHHHHHHHHHH
Confidence 3344444 6778888887765 346789999999999999999998752 211 12345555666555544
No 96
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=61.44 E-value=14 Score=33.77 Aligned_cols=52 Identities=12% Similarity=0.110 Sum_probs=35.9
Q ss_pred HHHHhhcccCCCceecchhhhhhhhhc------CCceEEEEecCCCceEEEEeeCCeecc
Q psy16631 124 AAEIFFESFNVPALYVSMQAVLSLYAT------GRTTGVVLDSGDGVTHAVPIYEGFAMP 177 (376)
Q Consensus 124 ~~~~lfe~~~~~~v~~~~~~~~a~~~~------g~~tglVVDiG~~~t~i~pv~dG~~~~ 177 (376)
+.+.+=+.+++| |++.++.-+++++. +..+.+.|.+|.+ .-...|.||+++.
T Consensus 88 l~~~l~~~~~~p-v~v~NDa~a~a~aE~~~g~~~~~~~~~l~ig~G-iG~giv~~G~~~~ 145 (291)
T PRK05082 88 LVQTLEQLTDLP-TIALNDAQAAAWAEYQALPDDIRNMVFITVSTG-VGGGIVLNGKLLT 145 (291)
T ss_pred hHHHHHHHhCCC-EEEECcHHHHHHHHHHhcCCCCCCEEEEEECCC-cceEEEECCEEee
Confidence 333444567887 77888888877642 4467889999865 4556677888765
No 97
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=58.45 E-value=9.8 Score=39.30 Aligned_cols=31 Identities=29% Similarity=0.379 Sum_probs=25.4
Q ss_pred hhhcCCce--EEEEecCCCceEEEEeeCCeecc
Q psy16631 147 LYATGRTT--GVVLDSGDGVTHAVPIYEGFAMP 177 (376)
Q Consensus 147 ~~~~g~~t--glVVDiG~~~t~i~pv~dG~~~~ 177 (376)
+|-+|..+ ++++|+|+.+|+++-+.+|.+..
T Consensus 270 a~ltg~~~g~~i~~DmGGTStDva~i~~G~pe~ 302 (674)
T COG0145 270 AYLTGLKAGNAIVFDMGGTSTDVALIIDGEPEI 302 (674)
T ss_pred HHhcccccCCEEEEEcCCcceeeeeeecCcEEe
Confidence 34446667 99999999999999999887654
No 98
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=58.13 E-value=18 Score=33.30 Aligned_cols=53 Identities=9% Similarity=0.001 Sum_probs=37.8
Q ss_pred HHHHhhcccCCCceecchhhhhhhhhc-------CCceEEEEecCCCceEEEEeeCCeeccc
Q psy16631 124 AAEIFFESFNVPALYVSMQAVLSLYAT-------GRTTGVVLDSGDGVTHAVPIYEGFAMPH 178 (376)
Q Consensus 124 ~~~~lfe~~~~~~v~~~~~~~~a~~~~-------g~~tglVVDiG~~~t~i~pv~dG~~~~~ 178 (376)
+.+.+=+.+++| |.+.++.-+++++. +..+.+.|.+|.+ .-...|.||++...
T Consensus 88 l~~~l~~~~~~p-V~ieNDa~aaalaE~~~g~~~~~~~~~~l~~gtG-iG~giv~~G~l~~G 147 (303)
T PRK13310 88 LRADLSARLGRD-VRLDNDANCFALSEAWDDEFTQYPLVMGLILGTG-VGGGLVFNGKPISG 147 (303)
T ss_pred HHHHHHHHHCCC-eEEeccHhHHHHHHhhhccccCCCcEEEEEecCc-eEEEEEECCEEeeC
Confidence 445555667887 77888888877542 3478888999875 56667789987653
No 99
>PRK09698 D-allose kinase; Provisional
Probab=55.04 E-value=26 Score=32.20 Aligned_cols=52 Identities=17% Similarity=0.160 Sum_probs=35.7
Q ss_pred HHHHhhcccCCCceecchhhhhhhhhc------CCceEEEEecCCCceEEEEeeCCeecc
Q psy16631 124 AAEIFFESFNVPALYVSMQAVLSLYAT------GRTTGVVLDSGDGVTHAVPIYEGFAMP 177 (376)
Q Consensus 124 ~~~~lfe~~~~~~v~~~~~~~~a~~~~------g~~tglVVDiG~~~t~i~pv~dG~~~~ 177 (376)
+.+.+=+.+++| |.+.++.-+++++. +..+.+.|.+|.+ .-...|.||+++.
T Consensus 96 l~~~l~~~~~~p-v~v~NDa~aaa~~E~~~~~~~~~~~~~v~lgtG-IG~giv~~G~~~~ 153 (302)
T PRK09698 96 LADKLENTLNCP-VFFSRDVNLQLLWDVKENNLTQQLVLGAYLGTG-MGFAVWMNGAPWT 153 (302)
T ss_pred HHHHHHHHhCCC-EEEcchHhHHHHHHHHhcCCCCceEEEEEecCc-eEEEEEECCEEee
Confidence 444555567887 77888877776532 3457888999866 5555677888765
No 100
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=51.13 E-value=8.1 Score=36.71 Aligned_cols=24 Identities=17% Similarity=0.271 Sum_probs=20.0
Q ss_pred cCeEeccCcccccCHHHHHHHHHH
Q psy16631 296 QNIVLSGGSTLFKGFGDRLLAEIR 319 (376)
Q Consensus 296 ~nIvl~GG~s~i~Gl~~rl~~eL~ 319 (376)
..|++|||++.=+-|.+||++.|.
T Consensus 286 ~~v~v~GGGa~N~~L~~~L~~~l~ 309 (364)
T PF03702_consen 286 DEVYVCGGGARNPFLMERLQERLP 309 (364)
T ss_dssp EEEEEESGGGG-HHHHHHHHHH-T
T ss_pred ceEEEECCCcCCHHHHHHHHhhCC
Confidence 479999999999999999998884
No 101
>KOG1386|consensus
Probab=49.93 E-value=1.4e+02 Score=29.45 Aligned_cols=87 Identities=15% Similarity=0.140 Sum_probs=51.1
Q ss_pred HHHHHHHHHhhcCccCC-CCCCCCcEEEEeCCCC---ChHhHHHHHHHhhcccCCC-c-------eecch-------hhh
Q psy16631 84 NDMERIWQYVYSNDQLQ-TFSEEHPVLLTEAPLN---PRRNREKAAEIFFESFNVP-A-------LYVSM-------QAV 144 (376)
Q Consensus 84 ~~~~~~l~~~~~~~~l~-~~~~~~~vvl~~~~~~---~~~~r~~~~~~lfe~~~~~-~-------v~~~~-------~~~ 144 (376)
+.++.+++.+-. +.. -..++.||.|-..+-+ +....+++.+.+...+... . +.++. ..+
T Consensus 65 ~~l~pLlefA~~--~IPk~~h~~Tpl~l~ATAGMRLL~~~~qeaIl~~l~~~l~~~s~f~f~~~~a~IIsG~~EGvYgWi 142 (501)
T KOG1386|consen 65 VYLTPLLEFAKE--HIPKEKHKETPLFLGATAGMRLLPLAQQEAILEVLRRVLKSLSDFLFDDEWARIISGKEEGVYGWI 142 (501)
T ss_pred HHHHHHHHHHHh--hCCHhhcCCCCeEEEecccceecCcccHHHHHHHHHHhcccccCCcccccccEEeecccceehhhH
Confidence 346666666652 222 2235678888767655 5667778888776555421 1 22221 223
Q ss_pred hhhhhcC-----------CceEEEEecCCCceEEEEeeC
Q psy16631 145 LSLYATG-----------RTTGVVLDSGDGVTHAVPIYE 172 (376)
Q Consensus 145 ~a~~~~g-----------~~tglVVDiG~~~t~i~pv~d 172 (376)
++.|..| +.|-=.+|+|+.+|+|+=+..
T Consensus 143 ~~NY~LG~f~~~~~~~~~~~T~G~lDlGGAS~QItFe~~ 181 (501)
T KOG1386|consen 143 AANYLLGRFGKKNRWDSRKETFGALDLGGASTQITFEPP 181 (501)
T ss_pred HHHHHHHhccccCcccCCcceeeeEecCCceeEEEEecC
Confidence 3444333 345667999999999986654
No 102
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=49.08 E-value=34 Score=29.00 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=18.6
Q ss_pred cccCCcccCHHHHHHHHHHhhc
Q psy16631 74 PMEHGIITDWNDMERIWQYVYS 95 (376)
Q Consensus 74 p~~~g~i~d~~~~~~~l~~~~~ 95 (376)
.+++|.|.|.+.+.+.++.++.
T Consensus 36 gi~~G~I~d~~~~~~~I~~ai~ 57 (187)
T smart00842 36 GIRKGVIVDIEAAARAIREAVE 57 (187)
T ss_pred CccCcEEECHHHHHHHHHHHHH
Confidence 4789999999988888888775
No 103
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=48.19 E-value=32 Score=29.17 Aligned_cols=47 Identities=17% Similarity=0.167 Sum_probs=35.3
Q ss_pred hcCeEeccCcccccCHHHHHHHHHHhhCCCCceEEEeCCCCCccchhhhHHHhhcc
Q psy16631 295 YQNIVLSGGSTLFKGFGDRLLAEIRKNAPKDLKIRISAPQERLYSTWIGGSILASL 350 (376)
Q Consensus 295 ~~nIvl~GG~s~i~Gl~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~l 350 (376)
.+.|+++||.++-+-+.+.+.+-+. .++.+... .-++-.||+++|..
T Consensus 150 ~~~i~~~GG~~~n~~~~q~~Advl~------~~V~~~~~---~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 150 IRRIRVSGGGAKNPLWMQILADVLG------RPVVRPEV---EEASALGAALLAAV 196 (198)
T ss_dssp ESEEEEESGGGGSHHHHHHHHHHHT------SEEEEESS---STHHHHHHHHHHHH
T ss_pred ceeeEeccccccChHHHHHHHHHhC------CceEeCCC---CchHHHHHHHHHHh
Confidence 4679999999998888888887773 35555443 34688999998854
No 104
>KOG1385|consensus
Probab=47.80 E-value=94 Score=29.97 Aligned_cols=19 Identities=32% Similarity=0.323 Sum_probs=16.2
Q ss_pred CceEEEEecCCCceEEEEe
Q psy16631 152 RTTGVVLDSGDGVTHAVPI 170 (376)
Q Consensus 152 ~~tglVVDiG~~~t~i~pv 170 (376)
..|.-|+|+|+++|+|+=-
T Consensus 212 ~~tvgv~DLGGGSTQi~f~ 230 (453)
T KOG1385|consen 212 HRTVGVVDLGGGSTQITFL 230 (453)
T ss_pred CCceEEEEcCCceEEEEEe
Confidence 5788999999999999743
No 105
>cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=46.81 E-value=41 Score=29.64 Aligned_cols=44 Identities=16% Similarity=0.233 Sum_probs=36.1
Q ss_pred HHHHHHHHHhhcCccCCCCCCCCcEEEEeCCCCChHhHHHHHHHhhcccCC
Q psy16631 84 NDMERIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNREKAAEIFFESFNV 134 (376)
Q Consensus 84 ~~~~~~l~~~~~~~~l~~~~~~~~vvl~~~~~~~~~~r~~~~~~lfe~~~~ 134 (376)
|.++.|-+++|. .+++||||+....++.++.+.+++++-+.||=
T Consensus 74 dv~~~I~~~AF~-------~S~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd 117 (229)
T cd08627 74 DVLHTIKEHAFV-------TSEYPIILSIEDHCSIVQQRNMAQHFKKVFGD 117 (229)
T ss_pred HHHHHHHHhhcc-------CCCCCEEEEEcccCCHHHHHHHHHHHHHHHhh
Confidence 456666666663 36899999999999999999999999998874
No 106
>PRK13322 pantothenate kinase; Reviewed
Probab=45.81 E-value=2.2e+02 Score=25.39 Aligned_cols=18 Identities=17% Similarity=0.222 Sum_probs=16.0
Q ss_pred cEEEeCCCcceEEEEcCC
Q psy16631 11 PVVIDNGSGVIKAGFAGD 28 (376)
Q Consensus 11 ~vViD~Gs~~~k~G~a~~ 28 (376)
.++||+|-.++|.|+..+
T Consensus 2 ~L~IDiGNT~iK~~l~~~ 19 (246)
T PRK13322 2 ILELDCGNSRLKWRVIDN 19 (246)
T ss_pred EEEEEeCCCcEEEEEEcC
Confidence 479999999999999864
No 107
>cd08626 PI-PLCc_beta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 4. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=44.81 E-value=43 Score=30.11 Aligned_cols=44 Identities=18% Similarity=0.212 Sum_probs=36.6
Q ss_pred HHHHHHHHHhhcCccCCCCCCCCcEEEEeCCCCChHhHHHHHHHhhcccCC
Q psy16631 84 NDMERIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNREKAAEIFFESFNV 134 (376)
Q Consensus 84 ~~~~~~l~~~~~~~~l~~~~~~~~vvl~~~~~~~~~~r~~~~~~lfe~~~~ 134 (376)
|.++.|-+++|. .+++||||+....++..+++++++++-+.||=
T Consensus 76 dv~~aI~~~AF~-------~s~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd 119 (257)
T cd08626 76 DVIQAIKDTAFV-------TSDYPVILSFENHCSKPQQYKLAKYCEEIFGD 119 (257)
T ss_pred HHHHHHHHHhcc-------cCCCCEEEEEeccCCHHHHHHHHHHHHHHHhH
Confidence 566777777773 26899999999999999999999999988874
No 108
>cd08630 PI-PLCc_delta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta3 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This family corresponds to the catalytic domain wh
Probab=44.59 E-value=44 Score=30.07 Aligned_cols=44 Identities=11% Similarity=0.134 Sum_probs=36.3
Q ss_pred HHHHHHHHHhhcCccCCCCCCCCcEEEEeCCCCChHhHHHHHHHhhcccCC
Q psy16631 84 NDMERIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNREKAAEIFFESFNV 134 (376)
Q Consensus 84 ~~~~~~l~~~~~~~~l~~~~~~~~vvl~~~~~~~~~~r~~~~~~lfe~~~~ 134 (376)
|.++.|-+++|. .+++||||+....++....+.+++++-+.||=
T Consensus 74 ~v~~~I~~~AF~-------~s~yPvIlslE~Hcs~~qQ~~~a~~l~~~~Gd 117 (258)
T cd08630 74 DVIQAVRQHAFT-------ASPYPVILSLENHCGLEQQAAMARHLQTILGD 117 (258)
T ss_pred HHHHHHHHHhcc-------CCCCCEEEEeeccCCHHHHHHHHHHHHHHHhh
Confidence 556666667663 36899999999999999999999999988874
No 109
>cd08596 PI-PLCc_epsilon Catalytic domain of metazoan phosphoinositide-specific phospholipase C-epsilon. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-epsilon isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-epsilon represents a class of mammalian PI-PLC that has an N-terminal CDC25 homology domain with a guanyl-nucleotide exchange factor (GFF) activity, a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core
Probab=43.56 E-value=46 Score=29.86 Aligned_cols=44 Identities=25% Similarity=0.338 Sum_probs=36.1
Q ss_pred HHHHHHHHHhhcCccCCCCCCCCcEEEEeCCCCChHhHHHHHHHhhcccCC
Q psy16631 84 NDMERIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNREKAAEIFFESFNV 134 (376)
Q Consensus 84 ~~~~~~l~~~~~~~~l~~~~~~~~vvl~~~~~~~~~~r~~~~~~lfe~~~~ 134 (376)
|.++.|-+++|. .+++||||+....++.++.+.+++++-+.||=
T Consensus 74 dv~~~I~~~AF~-------~S~yPvIlslE~Hcs~~qQ~~ma~~l~~~~Gd 117 (254)
T cd08596 74 DVVEAINRSAFI-------TSDYPVILSIENHCSLQQQRKMAEIFKTVFGE 117 (254)
T ss_pred HHHHHHHHHhcc-------CCCCCEEEEecccCCHHHHHHHHHHHHHHHhH
Confidence 556666677773 36899999999999999999999999988873
No 110
>cd08598 PI-PLC1c_yeast Catalytic domain of putative yeast phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of putative phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) encoded by PLC1 genes from yeasts, which are homologs of the delta isoforms of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The prototype of this CD is protein Plc1p encoded by PLC1 genes fro
Probab=43.18 E-value=47 Score=29.37 Aligned_cols=44 Identities=20% Similarity=0.328 Sum_probs=36.0
Q ss_pred HHHHHHHHHhhcCccCCCCCCCCcEEEEeCCCCChHhHHHHHHHhhcccCC
Q psy16631 84 NDMERIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNREKAAEIFFESFNV 134 (376)
Q Consensus 84 ~~~~~~l~~~~~~~~l~~~~~~~~vvl~~~~~~~~~~r~~~~~~lfe~~~~ 134 (376)
|.++.|-+++|. .+++||||+....++....+.+++++-+.||-
T Consensus 74 dv~~~Ik~~aF~-------~s~yPvILslE~Hcs~~qQ~~ma~~l~~~lG~ 117 (231)
T cd08598 74 DVCRAIKKYAFV-------TSPYPLILSLEVHCDAEQQERMVEIMKETFGD 117 (231)
T ss_pred HHHHHHHHHhcc-------CCCCCEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 556666667763 36899999999999999999999999888874
No 111
>cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding motif,
Probab=42.90 E-value=49 Score=29.11 Aligned_cols=44 Identities=23% Similarity=0.319 Sum_probs=36.0
Q ss_pred HHHHHHHHHhhcCccCCCCCCCCcEEEEeCCCCChHhHHHHHHHhhcccCC
Q psy16631 84 NDMERIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNREKAAEIFFESFNV 134 (376)
Q Consensus 84 ~~~~~~l~~~~~~~~l~~~~~~~~vvl~~~~~~~~~~r~~~~~~lfe~~~~ 134 (376)
|.++.|-+++|. .+++||||+....++.++.+.+++++-+.||=
T Consensus 74 dv~~aI~~~AF~-------~s~yPvIlSlE~Hcs~~qQ~~ma~~l~~~lGd 117 (227)
T cd08594 74 DVIETINKYAFI-------KNEYPVILSIENHCSVQQQKKMAQYLKEILGD 117 (227)
T ss_pred HHHHHHHHhhcc-------CCCCCEEEEecccCCHHHHHHHHHHHHHHHhH
Confidence 556666667763 36899999999999999999999999888873
No 112
>TIGR03367 queuosine_QueD queuosine biosynthesis protein QueD. Members of this protein family, closely related to eukaryotic 6-pyruvoyl tetrahydrobiopterin synthase enzymes, are the QueD protein of queuosine biosynthesis. Queuosine is a hypermodified base in the wobble position of tRNAs for Tyr, His, Asp, and Asn in many species. This modification, although widespread, appears not to be important for viability. The queuosine precursor made by this enzyme may be converted instead to archeaosine as in some Archaea.
Probab=42.83 E-value=34 Score=25.36 Aligned_cols=50 Identities=24% Similarity=0.458 Sum_probs=34.6
Q ss_pred cCCcccCHHHHHHHHHHhhcCccCCCCCCCCcEEEEeCCCCChHhHHHHHHHhhcccC
Q psy16631 76 EHGIITDWNDMERIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNREKAAEIFFESFN 133 (376)
Q Consensus 76 ~~g~i~d~~~~~~~l~~~~~~~~l~~~~~~~~vvl~~~~~~~~~~r~~~~~~lfe~~~ 133 (376)
..|.+.|+..++..++.+.. .| ++..+.-.+++. ...-|.+++.+++.+.
T Consensus 42 ~~g~v~Df~~lk~~~~~i~~--~l-----Dh~~Lne~~~~~-~pT~E~ia~~i~~~l~ 91 (92)
T TIGR03367 42 EAGMVMDFSDLKAIVKEVVD--RL-----DHALLNDVPGLE-NPTAENLARWIYDRLK 91 (92)
T ss_pred CccEEEEHHHHHHHHHHHHH--hC-----CCcEeeCCCCCC-CCCHHHHHHHHHHHHh
Confidence 47999999999999988763 23 455554444443 3356788999888653
No 113
>cd08631 PI-PLCc_delta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta4 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which
Probab=42.71 E-value=47 Score=29.86 Aligned_cols=44 Identities=16% Similarity=0.240 Sum_probs=35.8
Q ss_pred HHHHHHHHHhhcCccCCCCCCCCcEEEEeCCCCChHhHHHHHHHhhcccCC
Q psy16631 84 NDMERIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNREKAAEIFFESFNV 134 (376)
Q Consensus 84 ~~~~~~l~~~~~~~~l~~~~~~~~vvl~~~~~~~~~~r~~~~~~lfe~~~~ 134 (376)
|.++.|-+++|. .+++||||+....++....+.+++++-|.||=
T Consensus 74 ~v~~~Ik~~AF~-------~s~yPvIlslE~Hc~~~qQ~~ma~~l~~~lGd 117 (258)
T cd08631 74 DVVAAVAQYAFQ-------VSDYPVILSLENHCGVEQQQTMAQHLTEILGE 117 (258)
T ss_pred HHHHHHHHHhcc-------CCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 456666666663 36899999999999999999999999888873
No 114
>cd08558 PI-PLCc_eukaryota Catalytic domain of eukaryotic phosphoinositide-specific phospholipase C and similar proteins. This family corresponds to the catalytic domain present in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) and similar proteins. The higher eukaryotic PI-PLCs play a critical role in most signal transduction pathways, controlling numerous cellular events such as cell growth, proliferation, excitation and secretion. They strictly require Ca2+ for the catalytic activity. They display a clear preference towards the hydrolysis of the more highly phosphorylated membrane phospholipids PI-analogues, phosphatidylinositol 4,5-bisphosphate (PIP2) and phosphatidylinositol-4-phosphate (PIP), to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein ki
Probab=42.48 E-value=49 Score=29.14 Aligned_cols=44 Identities=25% Similarity=0.361 Sum_probs=36.5
Q ss_pred HHHHHHHHHhhcCccCCCCCCCCcEEEEeCCCCChHhHHHHHHHhhcccCC
Q psy16631 84 NDMERIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNREKAAEIFFESFNV 134 (376)
Q Consensus 84 ~~~~~~l~~~~~~~~l~~~~~~~~vvl~~~~~~~~~~r~~~~~~lfe~~~~ 134 (376)
|.++.|-+++|. .+++||||+....++.+..+.+++++-+.||-
T Consensus 74 dv~~~Ik~~aF~-------~s~yPvILslE~Hcs~~qQ~~ma~~l~~~lGd 117 (226)
T cd08558 74 DVIEAIKEYAFV-------TSPYPVILSLENHCSLEQQKKMAQILKEIFGD 117 (226)
T ss_pred HHHHHHHHHhcc-------cCCCCeEEEEecCCCHHHHHHHHHHHHHHHhh
Confidence 566777777773 26899999999999999999999999888874
No 115
>cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain.The PLC catalytic core domain is a TIM barrel with two highl
Probab=42.14 E-value=50 Score=29.12 Aligned_cols=44 Identities=20% Similarity=0.278 Sum_probs=35.8
Q ss_pred HHHHHHHHHhhcCccCCCCCCCCcEEEEeCCCCChHhHHHHHHHhhcccCC
Q psy16631 84 NDMERIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNREKAAEIFFESFNV 134 (376)
Q Consensus 84 ~~~~~~l~~~~~~~~l~~~~~~~~vvl~~~~~~~~~~r~~~~~~lfe~~~~ 134 (376)
|.++.|-+++|. .+++||||+....++.++.+.+++++-+.||-
T Consensus 74 dv~~~I~~~aF~-------~s~yPvIlslE~Hcs~~qQ~~ma~il~~~lGd 117 (229)
T cd08592 74 DVLKTIKEHAFV-------TSEYPVILSIENHCSLPQQRNMAQAFKEVFGD 117 (229)
T ss_pred HHHHHHHHHhcc-------CCCCCEEEEEecCCCHHHHHHHHHHHHHHHhH
Confidence 556666666663 36899999999999999999999999888874
No 116
>cd08629 PI-PLCc_delta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta1 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This subfamily corresponds to the catalytic domain
Probab=41.90 E-value=50 Score=29.69 Aligned_cols=44 Identities=14% Similarity=0.197 Sum_probs=36.1
Q ss_pred HHHHHHHHHhhcCccCCCCCCCCcEEEEeCCCCChHhHHHHHHHhhcccCC
Q psy16631 84 NDMERIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNREKAAEIFFESFNV 134 (376)
Q Consensus 84 ~~~~~~l~~~~~~~~l~~~~~~~~vvl~~~~~~~~~~r~~~~~~lfe~~~~ 134 (376)
|.++.|-+++|. .+++||||+....++..+.+.+++++-+.||=
T Consensus 74 ~v~~~I~~~AF~-------~S~yPvIlsLE~Hcs~~qQ~~ma~~l~~~lGd 117 (258)
T cd08629 74 DVLRAIRDYAFK-------ASPYPVILSLENHCSLEQQRVMARHLRAILGP 117 (258)
T ss_pred HHHHHHHHHhcc-------CCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 556666667663 36899999999999999999999999988874
No 117
>cd08632 PI-PLCc_eta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=41.64 E-value=53 Score=29.42 Aligned_cols=44 Identities=25% Similarity=0.375 Sum_probs=36.2
Q ss_pred HHHHHHHHHhhcCccCCCCCCCCcEEEEeCCCCChHhHHHHHHHhhcccCC
Q psy16631 84 NDMERIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNREKAAEIFFESFNV 134 (376)
Q Consensus 84 ~~~~~~l~~~~~~~~l~~~~~~~~vvl~~~~~~~~~~r~~~~~~lfe~~~~ 134 (376)
|.++.|-+++|. .+++||||+....++.+..+++++++-+.||=
T Consensus 74 dv~~aI~~~AF~-------~S~yPvIlSlE~Hcs~~qQ~~ma~~l~~~lGd 117 (253)
T cd08632 74 DVIETINKYAFV-------KNEFPVILSIENHCSIQQQKKIAQYLKEIFGD 117 (253)
T ss_pred HHHHHHHHHhcc-------CCCCCEEEEecccCCHHHHHHHHHHHHHHHhh
Confidence 556666667663 46899999999999999999999999988874
No 118
>cd08595 PI-PLCc_zeta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-zeta. This family corresponds to the catalytic domain presenting in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-zeta isozyme. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-zeta represents a class of sperm-specific PI-PLC that has an N-terminal EF-hand domain, a PLC catalytic core domain, and a C-terminal C2 domain. The PLC catalytic core domain is a TIM barrel with two highly conserved regions (X and Y)
Probab=41.61 E-value=51 Score=29.64 Aligned_cols=44 Identities=14% Similarity=0.245 Sum_probs=36.2
Q ss_pred HHHHHHHHHhhcCccCCCCCCCCcEEEEeCCCCChHhHHHHHHHhhcccCC
Q psy16631 84 NDMERIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNREKAAEIFFESFNV 134 (376)
Q Consensus 84 ~~~~~~l~~~~~~~~l~~~~~~~~vvl~~~~~~~~~~r~~~~~~lfe~~~~ 134 (376)
|.++.|-+++|. .+++||||+....++......+++++-|.||=
T Consensus 74 ~v~~~I~~~AF~-------~s~yPvIlslE~Hcs~~qQ~~~a~~l~~~lgd 117 (257)
T cd08595 74 EVITTVEKYAFE-------KSDYPVVLSLENHCSTEQQEIMAHYLVSILGE 117 (257)
T ss_pred HHHHHHHHHhcc-------CCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 556666667763 47899999999999999999999999888874
No 119
>cd08591 PI-PLCc_beta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for homod
Probab=41.50 E-value=51 Score=29.61 Aligned_cols=44 Identities=25% Similarity=0.300 Sum_probs=36.1
Q ss_pred HHHHHHHHHhhcCccCCCCCCCCcEEEEeCCCCChHhHHHHHHHhhcccCC
Q psy16631 84 NDMERIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNREKAAEIFFESFNV 134 (376)
Q Consensus 84 ~~~~~~l~~~~~~~~l~~~~~~~~vvl~~~~~~~~~~r~~~~~~lfe~~~~ 134 (376)
+.++.|-+++|. .+++||||+....++..+...+++++-+.||=
T Consensus 76 ~v~~aIk~~AF~-------~s~yPvIlslE~Hcs~~qQ~~ma~il~~~lGd 119 (257)
T cd08591 76 DVIEAIAETAFK-------TSEYPVILSFENHCSSKQQAKMAEYCREIFGD 119 (257)
T ss_pred HHHHHHHHHhcc-------CCCCCEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 556666666663 46899999999999999999999999988874
No 120
>cd08593 PI-PLCc_delta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which is
Probab=41.48 E-value=50 Score=29.71 Aligned_cols=44 Identities=14% Similarity=0.205 Sum_probs=36.2
Q ss_pred HHHHHHHHHhhcCccCCCCCCCCcEEEEeCCCCChHhHHHHHHHhhcccCC
Q psy16631 84 NDMERIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNREKAAEIFFESFNV 134 (376)
Q Consensus 84 ~~~~~~l~~~~~~~~l~~~~~~~~vvl~~~~~~~~~~r~~~~~~lfe~~~~ 134 (376)
|.++.|-+++|. .+++||||+....++...+..+++++-|.||-
T Consensus 74 ~v~~~I~~~aF~-------~s~yPvIlslE~Hcs~~qQ~~~a~~~~~~~g~ 117 (257)
T cd08593 74 DVIQAIREYAFK-------VSPYPVILSLENHCSVEQQKVMAQHLKSILGD 117 (257)
T ss_pred HHHHHHHHHhcc-------CCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 556666667763 36899999999999999999999999888874
No 121
>cd08633 PI-PLCc_eta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=39.82 E-value=58 Score=29.21 Aligned_cols=44 Identities=23% Similarity=0.309 Sum_probs=36.1
Q ss_pred HHHHHHHHHhhcCccCCCCCCCCcEEEEeCCCCChHhHHHHHHHhhcccCC
Q psy16631 84 NDMERIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNREKAAEIFFESFNV 134 (376)
Q Consensus 84 ~~~~~~l~~~~~~~~l~~~~~~~~vvl~~~~~~~~~~r~~~~~~lfe~~~~ 134 (376)
|.++.|-+++|. .+++||||+....++......+++++-|.||=
T Consensus 74 ~v~~~I~~~AF~-------~s~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd 117 (254)
T cd08633 74 DVIETINKYAFI-------KNEYPVILSIENHCSVPQQKKMAQYLTEILGD 117 (254)
T ss_pred HHHHHHHHHhcc-------CCCCCEEEEecccCCHHHHHHHHHHHHHHHhH
Confidence 556666667773 36899999999999999999999999988874
No 122
>cd08597 PI-PLCc_PRIP_metazoa Catalytic domain of metazoan phospholipase C related, but catalytically inactive protein. This family corresponds to the catalytic domain present in metazoan phospholipase C related, but catalytically inactive proteins (PRIP), which belong to a group of novel Inositol 1,4,5-trisphosphate (InsP3) binding protein. PRIP has a primary structure and domain architecture, incorporating a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain with highly conserved X- and Y-regions split by a linker sequence, and a C-terminal C2 domain, similar to phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11)-delta isoforms. Due to replacement of critical catalytic residues, PRIP do not have PLC enzymatic activity. PRIP consists of two subfamilies, PRIP-1(previously known as p130 or PLC-1), which is predominantly expressed in the brain, and PRIP-2 (previously known as PLC-2), which exhibits a relatively ubiquitous expression. Experiment
Probab=37.65 E-value=61 Score=29.22 Aligned_cols=44 Identities=20% Similarity=0.286 Sum_probs=35.9
Q ss_pred HHHHHHHHHhhcCccCCCCCCCCcEEEEeCCCCChHhHHHHHHHhhcccCC
Q psy16631 84 NDMERIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNREKAAEIFFESFNV 134 (376)
Q Consensus 84 ~~~~~~l~~~~~~~~l~~~~~~~~vvl~~~~~~~~~~r~~~~~~lfe~~~~ 134 (376)
|.++.|-+++|. .+++||||+....++....+.+++++-+.||-
T Consensus 74 dv~~~I~~~aF~-------~s~yPvIlslE~Hc~~~qQ~~~a~~l~~~lG~ 117 (260)
T cd08597 74 SVIEAINEYAFV-------ASEYPLILCIENHCSEKQQLVMAQYLKEIFGD 117 (260)
T ss_pred HHHHHHHHHhcc-------CCCCCEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 556666667763 36899999999999999999999999888874
No 123
>TIGR00103 DNA_YbaB_EbfC DNA-binding protein, YbaB/EbfC family. The function of this protein is unknown, but it has been expressed and crystallized. Its gene nearly always occurs next to recR and/or dnaX. It is restricted to Bacteria and the plant Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A member is present even in the minimal gene complement of Mycoplasm genitalium.
Probab=36.96 E-value=57 Score=24.75 Aligned_cols=46 Identities=20% Similarity=0.429 Sum_probs=25.2
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHhCCHHHHHHhhcCeEeccCcccccCH
Q psy16631 263 FRPDLIGEESEGIHDVLYYAIQKSDLDLRKVLYQNIVLSGGSTLFKGF 310 (376)
Q Consensus 263 F~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~Gl 310 (376)
++|++++.+..-|.++|..+++..-.......-+ .++||....|||
T Consensus 57 Id~~~l~~d~e~LedlI~~A~N~A~~k~~~~~~e--~~t~gl~~~pGl 102 (102)
T TIGR00103 57 IDPSLLEEDKEALEDMITEALNDAVKKVEETYKE--LMTSGMPLPPGL 102 (102)
T ss_pred ECHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHhCCCCCCCCC
Confidence 3333333233457777777776553333332223 678887644886
No 124
>cd08628 PI-PLCc_gamma2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 2. PI-PLC is a signaling enzyme that hydrolyze the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=36.07 E-value=71 Score=28.70 Aligned_cols=44 Identities=20% Similarity=0.302 Sum_probs=35.9
Q ss_pred HHHHHHHHHhhcCccCCCCCCCCcEEEEeCCCCChHhHHHHHHHhhcccCC
Q psy16631 84 NDMERIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNREKAAEIFFESFNV 134 (376)
Q Consensus 84 ~~~~~~l~~~~~~~~l~~~~~~~~vvl~~~~~~~~~~r~~~~~~lfe~~~~ 134 (376)
|.++.|-+++|. .+++||||+....++..+.+.+++++-+.||-
T Consensus 74 dv~~~I~~~AF~-------~s~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd 117 (254)
T cd08628 74 DVVQAIKDHAFV-------TSEYPVILSIEEHCSVEQQRHMAKVFKEVFGD 117 (254)
T ss_pred HHHHHHHHHhcc-------CCCCCEEEEEeccCCHHHHHHHHHHHHHHHhH
Confidence 556666677763 36899999999999999999999999888874
No 125
>PF03727 Hexokinase_2: Hexokinase; InterPro: IPR022673 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF00349 from PFAM. Some members of the family have two copies of each of these domains. This entry represents the more C-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4DHY_A 3ID8_A 4DCH_A 3FGU_A 3QIC_A 3A0I_X 3VEY_A 3IDH_A 3VEV_A 3VF6_A ....
Probab=34.03 E-value=52 Score=29.29 Aligned_cols=42 Identities=19% Similarity=0.423 Sum_probs=32.9
Q ss_pred cccCHHHHHHHHHHhhCCC-CceEEEeCCCCCccchhhhHHHhhcc
Q psy16631 306 LFKGFGDRLLAEIRKNAPK-DLKIRISAPQERLYSTWIGGSILASL 350 (376)
Q Consensus 306 ~i~Gl~~rl~~eL~~~~~~-~~~i~v~~~~~~~~~~w~Gasi~a~l 350 (376)
..|+|.+++++-|..+.+. ..++.+....| ++=+||++.|.+
T Consensus 198 ~~p~f~~~l~~~l~~L~~~~~~~v~~~~~~d---gsg~GAAi~AA~ 240 (243)
T PF03727_consen 198 KYPNFRERLQEALDELLPEEGCKVEFVLSED---GSGVGAAIAAAV 240 (243)
T ss_dssp HSTTHHHHHHHHHHHHSTT-CEEEEEEE-SS---THHHHHHHHHHH
T ss_pred eCHHHHHHHHHHHHHhcccccceEEEEEecC---chHHHHHHHHHH
Confidence 5899999999999999986 34566665533 579999998864
No 126
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=33.91 E-value=27 Score=33.20 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=20.6
Q ss_pred CeEeccCcccccCHHHHHHHHH
Q psy16631 297 NIVLSGGSTLFKGFGDRLLAEI 318 (376)
Q Consensus 297 nIvl~GG~s~i~Gl~~rl~~eL 318 (376)
.|++|||++.-|-|.+||++.|
T Consensus 289 ~vlv~GGGa~N~~Lm~~L~~~l 310 (365)
T PRK09585 289 ELLVCGGGARNPTLMERLAALL 310 (365)
T ss_pred EEEEECCCcchHHHHHHHHHhc
Confidence 5999999999999999999888
No 127
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=33.12 E-value=1.1e+02 Score=22.38 Aligned_cols=24 Identities=17% Similarity=0.037 Sum_probs=18.5
Q ss_pred EEEEecCCCceEEEEe-eCCeeccc
Q psy16631 155 GVVLDSGDGVTHAVPI-YEGFAMPH 178 (376)
Q Consensus 155 glVVDiG~~~t~i~pv-~dG~~~~~ 178 (376)
-+-||+|...+.++.+ .+|..+..
T Consensus 3 ilgiD~Ggt~i~~a~~d~~g~~~~~ 27 (99)
T smart00732 3 VLGLDPGRKGIGVAVVDETGKLADP 27 (99)
T ss_pred EEEEccCCCeEEEEEECCCCCEecC
Confidence 4789999988888877 46776654
No 128
>cd08624 PI-PLCc_beta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=32.17 E-value=83 Score=28.36 Aligned_cols=44 Identities=20% Similarity=0.252 Sum_probs=35.0
Q ss_pred HHHHHHHHHhhcCccCCCCCCCCcEEEEeCCCC-ChHhHHHHHHHhhcccCC
Q psy16631 84 NDMERIWQYVYSNDQLQTFSEEHPVLLTEAPLN-PRRNREKAAEIFFESFNV 134 (376)
Q Consensus 84 ~~~~~~l~~~~~~~~l~~~~~~~~vvl~~~~~~-~~~~r~~~~~~lfe~~~~ 134 (376)
|.++.|-+++|. .+++||||+....+ +..+.+.+++++-+.||-
T Consensus 76 dv~~~I~~~AF~-------~s~yPvIlslE~Hc~s~~qQ~~ma~~l~~~lGd 120 (261)
T cd08624 76 DAIEAIAESAFK-------TSPYPVILSFENHVDSPKQQAKMAEYCRTIFGD 120 (261)
T ss_pred HHHHHHHHHhcc-------CCCCCEEEEehhcCCCHHHHHHHHHHHHHHHhh
Confidence 556666677773 36999999988888 678889999999988874
No 129
>cd08623 PI-PLCc_beta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=31.50 E-value=90 Score=28.12 Aligned_cols=44 Identities=20% Similarity=0.236 Sum_probs=34.9
Q ss_pred HHHHHHHHHhhcCccCCCCCCCCcEEEEeCCCC-ChHhHHHHHHHhhcccCC
Q psy16631 84 NDMERIWQYVYSNDQLQTFSEEHPVLLTEAPLN-PRRNREKAAEIFFESFNV 134 (376)
Q Consensus 84 ~~~~~~l~~~~~~~~l~~~~~~~~vvl~~~~~~-~~~~r~~~~~~lfe~~~~ 134 (376)
|.++.|-+++|. .+++||||+....+ +..+.+.+++++-+.||=
T Consensus 76 dv~~~I~~~AF~-------~S~yPvIlSlE~Hc~s~~qQ~~ma~~l~~~lGd 120 (258)
T cd08623 76 EVIEAIAECAFK-------TSPFPILLSFENHVDSPKQQAKMAEYCRLIFGD 120 (258)
T ss_pred HHHHHHHHHhcc-------CCCCCEEEEehhcCCCHHHHHHHHHHHHHHHhh
Confidence 556666677763 46899999988888 578899999999888874
No 130
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=31.05 E-value=52 Score=24.16 Aligned_cols=18 Identities=17% Similarity=0.220 Sum_probs=15.7
Q ss_pred cEEEeCCCcceEEEEcCC
Q psy16631 11 PVVIDNGSGVIKAGFAGD 28 (376)
Q Consensus 11 ~vViD~Gs~~~k~G~a~~ 28 (376)
.+.||+|...+++|+..+
T Consensus 3 ilgiD~Ggt~i~~a~~d~ 20 (99)
T smart00732 3 VLGLDPGRKGIGVAVVDE 20 (99)
T ss_pred EEEEccCCCeEEEEEECC
Confidence 689999999999998753
No 131
>cd08599 PI-PLCc_plant Catalytic domain of plant phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11) encoded by PLC genes from higher plants, which are homologs of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The domain arrangement of plant PI-PLCs is structurally similar to the mammalian PLC-zeta isoform, whi
Probab=29.15 E-value=1.2e+02 Score=26.85 Aligned_cols=43 Identities=23% Similarity=0.321 Sum_probs=34.3
Q ss_pred HHHHHHHHHhhcCccCCCCCCCCcEEEEeCCCCChHhHHHHHHHhhcccC
Q psy16631 84 NDMERIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNREKAAEIFFESFN 133 (376)
Q Consensus 84 ~~~~~~l~~~~~~~~l~~~~~~~~vvl~~~~~~~~~~r~~~~~~lfe~~~ 133 (376)
|.++.|-+++|. .+++||||+....++.....++++++-+.||
T Consensus 74 dvl~~I~~~aF~-------~s~yPvILslE~hcs~~qQ~~~a~~l~~~lG 116 (228)
T cd08599 74 DCIKAIKENAFT-------ASEYPVIITLENHLSPELQAKAAQILRETLG 116 (228)
T ss_pred HHHHHHHHHhcc-------CCCCCEEEEEecCCCHHHHHHHHHHHHHHHh
Confidence 445555556552 3689999998888899999999999999998
No 132
>cd08625 PI-PLCc_beta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 3. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=28.89 E-value=96 Score=27.97 Aligned_cols=44 Identities=20% Similarity=0.237 Sum_probs=34.5
Q ss_pred HHHHHHHHHhhcCccCCCCCCCCcEEEEeCCCC-ChHhHHHHHHHhhcccCC
Q psy16631 84 NDMERIWQYVYSNDQLQTFSEEHPVLLTEAPLN-PRRNREKAAEIFFESFNV 134 (376)
Q Consensus 84 ~~~~~~l~~~~~~~~l~~~~~~~~vvl~~~~~~-~~~~r~~~~~~lfe~~~~ 134 (376)
|.++.|-+++|. .+++||||+....+ +.++++.+++++-+.||-
T Consensus 76 dv~~~I~~~aF~-------~s~yPvIlslE~Hc~s~~qQ~~ma~~l~~ilGd 120 (258)
T cd08625 76 DVIEAIAESAFK-------TSPYPVILSFENHVDSAKQQAKMAEYCRSIFGD 120 (258)
T ss_pred HHHHHHHHHhcc-------CCCCCEEEEehhcCCCHHHHHHHHHHHHHHHHH
Confidence 556666667773 36899999988888 588889999999888874
No 133
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=28.08 E-value=35 Score=33.37 Aligned_cols=60 Identities=18% Similarity=0.237 Sum_probs=38.3
Q ss_pred ChHhHHHHHHHhhccc-CC---------Cceecchhhhhhh-----hhcCC------ceEEEEecCCCceEEEEeeCCee
Q psy16631 117 PRRNREKAAEIFFESF-NV---------PALYVSMQAVLSL-----YATGR------TTGVVLDSGDGVTHAVPIYEGFA 175 (376)
Q Consensus 117 ~~~~r~~~~~~lfe~~-~~---------~~v~~~~~~~~a~-----~~~g~------~tglVVDiG~~~t~i~pv~dG~~ 175 (376)
....|+.+.+++.+.. +. ..-.++|.|.+.. ++.+. ..-++||||+.+|+|-.+.+|.+
T Consensus 192 ~epaR~~I~~vF~~~Iv~akGl~~i~~~~~~~i~PTP~AV~~a~~~la~~~~~~~g~g~ll~VDIGGATTDvhSv~~g~~ 271 (463)
T TIGR01319 192 PEAAREAICDIFLKKIVEAKGLDNAEDFIGEELMPTPAAVFEAAKAIAEGTDKDDGIGDFILIDIGGATTDVHSAAAGEL 271 (463)
T ss_pred chHHHHHHHHHHHHHHhcCCCHHHHHHHhCCcccCCHHHHHHHHHHHHhccccccCcCCEEEEEcCccccchhhccCCCc
Confidence 4667888887765432 11 2223444444432 23332 35799999999999999999966
Q ss_pred c
Q psy16631 176 M 176 (376)
Q Consensus 176 ~ 176 (376)
-
T Consensus 272 ~ 272 (463)
T TIGR01319 272 S 272 (463)
T ss_pred c
Confidence 5
No 134
>PF13941 MutL: MutL protein
Probab=27.29 E-value=49 Score=32.50 Aligned_cols=75 Identities=23% Similarity=0.248 Sum_probs=47.5
Q ss_pred CCcEEEEeCCC------CChHhHHHHHHHhhcc-cCCC---------ceecchhhhhh-----hhhc-CCceEEEEecCC
Q psy16631 105 EHPVLLTEAPL------NPRRNREKAAEIFFES-FNVP---------ALYVSMQAVLS-----LYAT-GRTTGVVLDSGD 162 (376)
Q Consensus 105 ~~~vvl~~~~~------~~~~~r~~~~~~lfe~-~~~~---------~v~~~~~~~~a-----~~~~-g~~tglVVDiG~ 162 (376)
..+++++++.+ +....|+.+.+++.+. .++| .--++|.|-+. +++. +...-+|||+|+
T Consensus 178 ~~~~~~~~NV~P~i~~ln~~paR~~I~~~F~~~Ii~akGl~~~~~~~~~~i~PTP~AVl~~~~lla~~~~g~llvVDIGG 257 (457)
T PF13941_consen 178 GKEVVITENVMPKIDVLNVEPAREAIREVFLRHIIQAKGLSKLREMVDGPIMPTPAAVLRAAELLAEGGIGDLLVVDIGG 257 (457)
T ss_pred CCCEEEeCCCCCCCCCcChHHHHHHHHHHHHHHHhcCCCHHHHHHHhCCcccCCHHHHHHHHHHHHhcccCCEEEEEccC
Confidence 45777776553 2345567666665543 1222 23344555444 3344 667889999999
Q ss_pred CceEEEEeeCCeecccc
Q psy16631 163 GVTHAVPIYEGFAMPHS 179 (376)
Q Consensus 163 ~~t~i~pv~dG~~~~~~ 179 (376)
.+|+|--+.+|.+....
T Consensus 258 ATTDVhSv~~~~~~~~~ 274 (457)
T PF13941_consen 258 ATTDVHSVAEGSPEIPG 274 (457)
T ss_pred cccchhhhccCCccccc
Confidence 99999999977665544
No 135
>PF09693 Phage_XkdX: Phage uncharacterised protein (Phage_XkdX); InterPro: IPR010022 This entry is represented by Bacteriophage 69, Orf86. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry identifies a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.
Probab=27.04 E-value=34 Score=21.00 Aligned_cols=11 Identities=36% Similarity=0.845 Sum_probs=9.2
Q ss_pred cceeHHHHhhc
Q psy16631 356 MWVSKREFDED 366 (376)
Q Consensus 356 ~~itk~ey~e~ 366 (376)
.|||++||+|-
T Consensus 25 g~IT~eey~eI 35 (40)
T PF09693_consen 25 GWITKEEYKEI 35 (40)
T ss_pred CeECHHHHHHh
Confidence 49999999883
No 136
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.65 E-value=2.5e+02 Score=25.50 Aligned_cols=45 Identities=18% Similarity=0.256 Sum_probs=29.2
Q ss_pred ceEEEEecCCCceEEEEeeCCeecc---ccceeecccHHHHHHHHHHHHH
Q psy16631 153 TTGVVLDSGDGVTHAVPIYEGFAMP---HSIMRNDIAGRDVTRYLKLLLR 199 (376)
Q Consensus 153 ~tglVVDiG~~~t~i~pv~dG~~~~---~~~~~~~~GG~~l~~~l~~~l~ 199 (376)
..++|||+|-+.|..+-|-++++.- +. +..+.-..+..++.++..
T Consensus 227 ~palvVd~GngHttaalvdedRI~gv~EHH--T~~Lspekled~I~rf~~ 274 (342)
T COG4012 227 DPALVVDYGNGHTTAALVDEDRIVGVYEHH--TIRLSPEKLEDQIIRFVE 274 (342)
T ss_pred CceEEEEccCCceEEEEecCCeEEEEeecc--cccCCHHHHHHHHHHHHh
Confidence 4689999999999999998886642 21 122333555555555443
No 137
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=26.64 E-value=1.2e+02 Score=29.28 Aligned_cols=49 Identities=18% Similarity=0.189 Sum_probs=32.5
Q ss_pred EEEEecCCCceEEEEeeCCeeccccceeecccHHHHHHHHHHHHHhcCC
Q psy16631 155 GVVLDSGDGVTHAVPIYEGFAMPHSIMRNDIAGRDVTRYLKLLLRKEGV 203 (376)
Q Consensus 155 glVVDiG~~~t~i~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~ 203 (376)
-+=||+|+.+|.++.+-|+.++.........--....+.+.+++.+.+.
T Consensus 146 ~lGIDiGSTttK~Vl~dd~~Ii~~~~~~t~~~~~~a~~~l~~~l~~~Gl 194 (404)
T TIGR03286 146 TLGIDSGSTTTKAVVMEDNEVIGTGWVPTTKVIESAEEAVERALEEAGV 194 (404)
T ss_pred EEEEEcChhheeeEEEcCCeEEEEEEeecccHHHHHHHHHHHHHHHcCC
Confidence 4557999999999999888776554433222234556666677766553
No 138
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=25.61 E-value=79 Score=29.47 Aligned_cols=23 Identities=9% Similarity=0.190 Sum_probs=18.3
Q ss_pred hhcccCCCceecchhhhhhhhhc
Q psy16631 128 FFESFNVPALYVSMQAVLSLYAT 150 (376)
Q Consensus 128 lfe~~~~~~v~~~~~~~~a~~~~ 150 (376)
+-..|+++.+.++++-.+.+|+.
T Consensus 86 l~~~lg~~~v~liNDfeA~a~gl 108 (316)
T PF02685_consen 86 LAQRLGIPRVRLINDFEAQAYGL 108 (316)
T ss_dssp CHCCCT-TCEEEEEHHHHHHHHH
T ss_pred HHHHhCCceEEEEcccchheecc
Confidence 33678999999999999998874
No 139
>PF13941 MutL: MutL protein
Probab=25.24 E-value=50 Score=32.48 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=19.5
Q ss_pred cEEEeCCCcceEEEEcC--CCCCCee
Q psy16631 11 PVVIDNGSGVIKAGFAG--DQVPKCC 34 (376)
Q Consensus 11 ~vViD~Gs~~~k~G~a~--~~~P~~~ 34 (376)
.+++|+||.|||+-... .+.++++
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~i 27 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLI 27 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEE
Confidence 58999999999998887 5666644
No 140
>PRK15027 xylulokinase; Provisional
Probab=24.74 E-value=66 Score=31.90 Aligned_cols=48 Identities=17% Similarity=0.156 Sum_probs=32.2
Q ss_pred hcCeEeccCcccccCHHHHHHHHHHhhCCCCceEEEeCCCCCccchhhhHHHhhcc
Q psy16631 295 YQNIVLSGGSTLFKGFGDRLLAEIRKNAPKDLKIRISAPQERLYSTWIGGSILASL 350 (376)
Q Consensus 295 ~~nIvl~GG~s~i~Gl~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~l 350 (376)
.+.|+++||+++-+-+.+.+..-+ +.++.+.. +...++-.||+++|..
T Consensus 387 ~~~i~~~GGga~s~~w~Qi~Adv~------g~pv~~~~--~~~~~~a~GaA~lA~~ 434 (484)
T PRK15027 387 PQSVTLIGGGARSEYWRQMLADIS------GQQLDYRT--GGDVGPALGAARLAQI 434 (484)
T ss_pred ccEEEEeCcccCCHHHHHHHHHHh------CCeEEeec--CCCcchHHHHHHHHHH
Confidence 356999999998887766666555 22443322 2333578999999854
No 141
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=24.60 E-value=1.1e+02 Score=29.80 Aligned_cols=58 Identities=22% Similarity=0.247 Sum_probs=37.4
Q ss_pred CcEEEeCCCcceEEEEcCCCCCCeeccccceecCccccccCCCCCCeeeCcchhhccCcceeeccccCCcccCHHHHHHH
Q psy16631 10 QPVVIDNGSGVIKAGFAGDQVPKCCFPNYIGRPKHIRVMAGALEGDIFVGPKAEEHRGLLSIHYPMEHGIITDWNDMERI 89 (376)
Q Consensus 10 ~~vViD~Gs~~~k~G~a~~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~d~~~~~~~ 89 (376)
-.+.+|+||..+++= .++-.|... =+.++... .-.+-+++|.|.|.+...+-
T Consensus 7 ~iv~LDIGTskV~~l-Vge~~~~g~-i~iig~g~--------------------------~~SrGik~G~I~di~~~~~s 58 (418)
T COG0849 7 LIVGLDIGTSKVKAL-VGELRPDGR-LNIIGVGS--------------------------HPSRGIKKGVIVDLDAAAQS 58 (418)
T ss_pred eEEEEEccCcEEEEE-EEEEcCCCe-EEEEeeec--------------------------ccCcccccceEEcHHHHHHH
Confidence 478999999999973 334333321 11222111 12356899999999998888
Q ss_pred HHHhhc
Q psy16631 90 WQYVYS 95 (376)
Q Consensus 90 l~~~~~ 95 (376)
++.+..
T Consensus 59 I~~av~ 64 (418)
T COG0849 59 IKKAVE 64 (418)
T ss_pred HHHHHH
Confidence 877764
No 142
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=23.90 E-value=1.4e+02 Score=29.43 Aligned_cols=47 Identities=21% Similarity=0.246 Sum_probs=32.6
Q ss_pred hcCeEeccCcccccCHHHHHHHHHHhhCCCCceEEEeCCCCCccchhhhHHHhhcc
Q psy16631 295 YQNIVLSGGSTLFKGFGDRLLAEIRKNAPKDLKIRISAPQERLYSTWIGGSILASL 350 (376)
Q Consensus 295 ~~nIvl~GG~s~i~Gl~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~l 350 (376)
.+.|+++||+|+-+-+.+.+.+-+. .++.+.. ..-++-.||+++|..
T Consensus 391 ~~~i~~~GG~s~s~~~~Q~~Adv~g------~pv~~~~---~~e~~a~GaA~~a~~ 437 (481)
T TIGR01312 391 IQSIRLIGGGAKSPAWRQMLADIFG------TPVDVPE---GEEGPALGAAILAAW 437 (481)
T ss_pred cceEEEeccccCCHHHHHHHHHHhC------CceeecC---CCcchHHHHHHHHHH
Confidence 3569999999999888777766652 2444333 223678999998854
No 143
>TIGR01669 phage_XkdX phage uncharacterized protein, XkdX family. This model represents a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.
Probab=23.88 E-value=39 Score=21.37 Aligned_cols=15 Identities=7% Similarity=0.290 Sum_probs=10.9
Q ss_pred cccc-cceeHHHHhhc
Q psy16631 352 TFKR-MWVSKREFDED 366 (376)
Q Consensus 352 ~~~~-~~itk~ey~e~ 366 (376)
.|-. .|||++||+|-
T Consensus 25 ~~V~~~~IT~eey~eI 40 (45)
T TIGR01669 25 KFVEKKLITREQYKVI 40 (45)
T ss_pred HHhhcCccCHHHHHHH
Confidence 3444 49999999883
No 144
>PLN02230 phosphoinositide phospholipase C 4
Probab=23.35 E-value=1.3e+02 Score=30.62 Aligned_cols=44 Identities=16% Similarity=0.218 Sum_probs=36.0
Q ss_pred HHHHHHHHHhhcCccCCCCCCCCcEEEEeCCCCChHhHHHHHHHhhcccCC
Q psy16631 84 NDMERIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNREKAAEIFFESFNV 134 (376)
Q Consensus 84 ~~~~~~l~~~~~~~~l~~~~~~~~vvl~~~~~~~~~~r~~~~~~lfe~~~~ 134 (376)
+.++.|-+++|. .+++||||+....++..+..++++++-+.||-
T Consensus 187 ~v~~~I~~~aF~-------~s~yPvIlslE~hcs~~~Q~~~a~~~~~~~Gd 230 (598)
T PLN02230 187 KCLDSIKANAFA-------ISKYPVIITLEDHLTPKLQFKVAKMITQTFGD 230 (598)
T ss_pred HHHHHHHHhccC-------CCCCCeEEEeccCCCHHHHHHHHHHHHHHHhh
Confidence 456666666663 36899999999999999999999999888874
No 145
>PLN02952 phosphoinositide phospholipase C
Probab=23.34 E-value=1.4e+02 Score=30.59 Aligned_cols=44 Identities=25% Similarity=0.311 Sum_probs=36.0
Q ss_pred HHHHHHHHHhhcCccCCCCCCCCcEEEEeCCCCChHhHHHHHHHhhcccCC
Q psy16631 84 NDMERIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNREKAAEIFFESFNV 134 (376)
Q Consensus 84 ~~~~~~l~~~~~~~~l~~~~~~~~vvl~~~~~~~~~~r~~~~~~lfe~~~~ 134 (376)
|.++.|-+++|. .+++||||+....++..+...+++++-+.||=
T Consensus 196 ~v~~~I~~~aF~-------~s~yPvIlslE~Hcs~~qQ~~~a~~~~~~~g~ 239 (599)
T PLN02952 196 KCLKSIRDYAFS-------SSPYPVIITLEDHLTPDLQAKVAEMATQIFGQ 239 (599)
T ss_pred HHHHHHHHHhcc-------CCCCCEEEEeecCCCHHHHHHHHHHHHHHHhh
Confidence 556666677763 36899999999999999999999999888874
No 146
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=22.90 E-value=1.2e+02 Score=27.84 Aligned_cols=47 Identities=17% Similarity=0.191 Sum_probs=32.3
Q ss_pred EEEEecCCCceEEEEeeCCeeccccceeecccHH---HHHHHHHHHHHhcCC
Q psy16631 155 GVVLDSGDGVTHAVPIYEGFAMPHSIMRNDIAGR---DVTRYLKLLLRKEGV 203 (376)
Q Consensus 155 glVVDiG~~~t~i~pv~dG~~~~~~~~~~~~GG~---~l~~~l~~~l~~~~~ 203 (376)
-+=||+|+.+|.++.+-+|.++... ..+.|++ ...+.|.+++.+.+.
T Consensus 34 ~~GIDiGStt~K~Vlld~~~i~~~~--~~~tg~~~~~~a~~~l~~~l~~~g~ 83 (293)
T TIGR03192 34 TCGIDVGSVSSQAVLVCDGELYGYN--SMRTGNNSPDSAKNALQGIMDKIGM 83 (293)
T ss_pred EEEEEeCchhEEEEEEeCCEEEEEE--eecCCCCHHHHHHHHHHHHHHHcCC
Confidence 3457999999999999877654432 3466653 556667777776553
No 147
>PLN02222 phosphoinositide phospholipase C 2
Probab=22.83 E-value=1.4e+02 Score=30.48 Aligned_cols=44 Identities=20% Similarity=0.227 Sum_probs=35.4
Q ss_pred HHHHHHHHHhhcCccCCCCCCCCcEEEEeCCCCChHhHHHHHHHhhcccCC
Q psy16631 84 NDMERIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNREKAAEIFFESFNV 134 (376)
Q Consensus 84 ~~~~~~l~~~~~~~~l~~~~~~~~vvl~~~~~~~~~~r~~~~~~lfe~~~~ 134 (376)
+.++.|-+++|. .+++||||+....++..+...+++++-+.||-
T Consensus 176 ~v~~~I~~~aF~-------~s~yPvIlslE~Hc~~~qQ~~~a~~~~~~~g~ 219 (581)
T PLN02222 176 KCLKAIRAHAFD-------VSDYPVVVTLEDHLTPDLQSKVAEMVTEIFGE 219 (581)
T ss_pred HHHHHHHHhccc-------CCCCCEEEEeecCCCHHHHHHHHHHHHHHHhh
Confidence 456666666663 46899999999999999999999999888874
No 148
>PRK13333 pantothenate kinase; Reviewed
Probab=22.83 E-value=97 Score=26.89 Aligned_cols=28 Identities=32% Similarity=0.558 Sum_probs=17.9
Q ss_pred hhhhhhcCCceEEEEecCCCceEEEEeeCCe
Q psy16631 144 VLSLYATGRTTGVVLDSGDGVTHAVPIYEGF 174 (376)
Q Consensus 144 ~~a~~~~g~~tglVVDiG~~~t~i~pv~dG~ 174 (376)
++++++. ..++|||+|...|- -.+.+|.
T Consensus 77 ~~a~~aa--~~~lVIDaGTAiTi-Dvv~~g~ 104 (206)
T PRK13333 77 IAACYAI--EDGVVVDAGSAITV-DIMSNGI 104 (206)
T ss_pred HHHhccC--CCeEEEEcCCceEE-EEEcCCc
Confidence 4445544 57999999987553 3445654
No 149
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=22.16 E-value=1.8e+02 Score=28.33 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=18.1
Q ss_pred ccccCCcccCHHHHHHHHHHhhc
Q psy16631 73 YPMEHGIITDWNDMERIWQYVYS 95 (376)
Q Consensus 73 ~p~~~g~i~d~~~~~~~l~~~~~ 95 (376)
..+++|.|.|.+.+.+-++.++.
T Consensus 44 ~gi~~G~I~d~~~~~~aI~~av~ 66 (420)
T PRK09472 44 RGMDKGGVNDLESVVKCVQRAID 66 (420)
T ss_pred CCccCCEEEcHHHHHHHHHHHHH
Confidence 35789999999888777777774
No 150
>TIGR00039 6PTHBS 6-pyruvoyl tetrahydropterin synthase/QueD family protein. This model has been downgraded from hypothetical_equivalog to subfamily. The animal enzymes are known to be 6-pyruvoyl tetrahydropterin synthase. The function of the bacterial branch of the sequence lineage had been thought to be the same, but many are now taken to be QueD, and enzyme of queuosine biosynthesis. Queuosine is a hypermodified base in the wobble position of some tRNAs in most species. A new model is built to be the QueD equivalog model.
Probab=21.75 E-value=1.2e+02 Score=23.75 Aligned_cols=52 Identities=21% Similarity=0.443 Sum_probs=33.3
Q ss_pred cCCcccCHHHHHHHHHHhhcCccCCCCCCCCcEEEEeCCCCChHhHHHHHHHhhcccC
Q psy16631 76 EHGIITDWNDMERIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNREKAAEIFFESFN 133 (376)
Q Consensus 76 ~~g~i~d~~~~~~~l~~~~~~~~l~~~~~~~~vvl~~~~~~~~~~r~~~~~~lfe~~~ 133 (376)
..|.+.|+..++.+++.++.. .| ++..+.-.+++.....-+.++..+++++.
T Consensus 44 ~~G~viDf~~lk~~~~~~~~~-~l-----DH~~Ln~~~~~~~~pT~Enia~~i~~~l~ 95 (124)
T TIGR00039 44 KTGMVMDFSDLKKIVKEVIDE-PL-----DHKLLNDDVNYLENPTSENVAVYIFDNLK 95 (124)
T ss_pred CceEEEEHHHHHHHHHHHhcc-CC-----CCceeccCCCCCCCCCHHHHHHHHHHHHH
Confidence 579999999999999887742 13 44444433332222345678888887654
No 151
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=21.08 E-value=52 Score=30.22 Aligned_cols=27 Identities=19% Similarity=0.383 Sum_probs=19.0
Q ss_pred CCCcEEEeCCCcceEEEEcCCCCCCee
Q psy16631 8 VNQPVVIDNGSGVIKAGFAGDQVPKCC 34 (376)
Q Consensus 8 ~~~~vViD~Gs~~~k~G~a~~~~P~~~ 34 (376)
.++.|++|+|+.++.++...+..|...
T Consensus 76 ~~~~i~vDmGGTTtDi~~i~~G~p~~~ 102 (290)
T PF01968_consen 76 LENAIVVDMGGTTTDIALIKDGRPEIS 102 (290)
T ss_dssp -SSEEEEEE-SS-EEEEEEETTEE---
T ss_pred CCCEEEEeCCCCEEEEEEEECCeeecc
Confidence 457999999999999999988777644
No 152
>PLN02228 Phosphoinositide phospholipase C
Probab=20.73 E-value=1.7e+02 Score=29.80 Aligned_cols=44 Identities=16% Similarity=0.268 Sum_probs=35.7
Q ss_pred HHHHHHHHHhhcCccCCCCCCCCcEEEEeCCCCChHhHHHHHHHhhcccCC
Q psy16631 84 NDMERIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNREKAAEIFFESFNV 134 (376)
Q Consensus 84 ~~~~~~l~~~~~~~~l~~~~~~~~vvl~~~~~~~~~~r~~~~~~lfe~~~~ 134 (376)
+.++.|-+++|. .+++||||+....++..++.++++++-+.||-
T Consensus 179 ~v~~~I~~~AF~-------~s~yPvIlslE~hc~~~qQ~~~a~~~~~~lg~ 222 (567)
T PLN02228 179 KCLNAIKDNAFQ-------VSDYPVVITLEDHLPPNLQAQVAKMLTKTFRG 222 (567)
T ss_pred HHHHHHHHhhcc-------CCCCCEEEEeecCCCHHHHHHHHHHHHHHHhH
Confidence 456666667663 36899999999999999999999999888874
No 153
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=20.55 E-value=4.8e+02 Score=24.72 Aligned_cols=27 Identities=30% Similarity=0.357 Sum_probs=19.1
Q ss_pred cCeEeccCcccccCHHHHHHHHHHhhCCCC
Q psy16631 296 QNIVLSGGSTLFKGFGDRLLAEIRKNAPKD 325 (376)
Q Consensus 296 ~nIvl~GG~s~i~Gl~~rl~~eL~~~~~~~ 325 (376)
.||+++||+. . .+.=|.+.|....+.+
T Consensus 174 ~NILisGGTG--S-GKTTlLNal~~~i~~~ 200 (355)
T COG4962 174 CNILISGGTG--S-GKTTLLNALSGFIDSD 200 (355)
T ss_pred eeEEEeCCCC--C-CHHHHHHHHHhcCCCc
Confidence 4999999998 3 3455666777766644
No 154
>PLN02223 phosphoinositide phospholipase C
Probab=20.47 E-value=1.7e+02 Score=29.44 Aligned_cols=45 Identities=13% Similarity=0.189 Sum_probs=35.9
Q ss_pred HHHHHHHHHhhcCccCCCCCCCCcEEEEeCCCCChHhHHHHHHHhhcccCC
Q psy16631 84 NDMERIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNREKAAEIFFESFNV 134 (376)
Q Consensus 84 ~~~~~~l~~~~~~~~l~~~~~~~~vvl~~~~~~~~~~r~~~~~~lfe~~~~ 134 (376)
+.++.|-+++|.. ++++||||+....++..+..++++++-+.||=
T Consensus 179 ~vl~aI~~~AF~~------s~~yPvIlslE~Hcs~~qQ~~~A~~l~~i~Gd 223 (537)
T PLN02223 179 ECLDAIKEHAFTK------CRSYPLIITFKDGLKPDLQSKATQMIDQTFGD 223 (537)
T ss_pred HHHHHHHHHhhhc------CCCCceEEEEcccCCHHHHHHHHHHHHHHHhh
Confidence 5666666777732 24899999999999999999999998888873
No 155
>PRK00153 hypothetical protein; Validated
Probab=20.34 E-value=1.4e+02 Score=22.60 Aligned_cols=35 Identities=29% Similarity=0.344 Sum_probs=20.8
Q ss_pred CCHHHHHHHHHHhCCHH---HHHHhhcCeEeccCcccccCH
Q psy16631 273 EGIHDVLYYAIQKSDLD---LRKVLYQNIVLSGGSTLFKGF 310 (376)
Q Consensus 273 ~~l~~~I~~~i~~~~~d---~r~~l~~nIvl~GG~s~i~Gl 310 (376)
.-|.++|..++...-.. ..+..++. ++||. .+|||
T Consensus 66 e~LedlI~~A~n~A~~~~~~~~~e~m~~--~~gg~-~~pgl 103 (104)
T PRK00153 66 EMLEDLILAAFNDALRKAEETMKEKMGK--LTGGL-LPPGF 103 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCCC-CCCCC
Confidence 45777777777655322 23333333 45776 78887
No 156
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=20.29 E-value=1.4e+02 Score=27.56 Aligned_cols=43 Identities=21% Similarity=0.308 Sum_probs=31.9
Q ss_pred CeEeccC--ccccc-CHHHHHHHHHHhhCCCCceEEEeCCCCCccchhhhHHHhhc
Q psy16631 297 NIVLSGG--STLFK-GFGDRLLAEIRKNAPKDLKIRISAPQERLYSTWIGGSILAS 349 (376)
Q Consensus 297 nIvl~GG--~s~i~-Gl~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~ 349 (376)
+|+|+|- .+..| .|.+++.+-|. .++++... ..+-.|++++|.
T Consensus 265 ~IvLSGs~g~~r~~~~v~~~I~~~L~------~~V~~L~~----ksAA~G~AiIA~ 310 (326)
T TIGR03281 265 GVVLAGSGGTLREPINFSGKIKRVLS------CKVLVLDS----ESAAIGLALIAE 310 (326)
T ss_pred cEEEeCcchhccCchHHHHHHHHHhC------CCeEEecc----hhhhhhHHHHHH
Confidence 7999988 77777 88888887774 35555554 567888888874
No 157
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=20.09 E-value=74 Score=28.07 Aligned_cols=19 Identities=26% Similarity=0.284 Sum_probs=15.9
Q ss_pred cEEEeCCCcceEEEEcCCC
Q psy16631 11 PVVIDNGSGVIKAGFAGDQ 29 (376)
Q Consensus 11 ~vViD~Gs~~~k~G~a~~~ 29 (376)
.++||+||..+|+....++
T Consensus 2 ~lgiDiGTts~K~~l~d~~ 20 (245)
T PF00370_consen 2 YLGIDIGTTSVKAVLFDED 20 (245)
T ss_dssp EEEEEECSSEEEEEEEETT
T ss_pred EEEEEEcccceEEEEEeCC
Confidence 4799999999999887643
Done!