RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16631
(376 letters)
>gnl|CDD|240426 PTZ00466, PTZ00466, actin-like protein; Provisional.
Length = 380
Score = 562 bits (1449), Expect = 0.0
Identities = 226/375 (60%), Positives = 295/375 (78%), Gaps = 5/375 (1%)
Query: 5 DVIVNQPVVIDNGSGVIKAGFAGDQVPKCCFPNYIGRPKHIRVMAGALEGDIFVGPKAEE 64
+ NQP++IDNG+G IKAGFAG+ VP FP+Y+GRPK+ RVMAGA+EG+IFVG KAEE
Sbjct: 8 QLYSNQPIIIDNGTGYIKAGFAGEDVPNLVFPSYVGRPKYKRVMAGAVEGNIFVGNKAEE 67
Query: 65 HRGLLSIHYPMEHGIITDWNDMERIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNREKA 124
+RGLL + YP+ HGII +WNDME IW +VY+ ++ SEEHPVLLTEAPLNP++N+EK
Sbjct: 68 YRGLLKVTYPINHGIIENWNDMENIWIHVYN--SMKINSEEHPVLLTEAPLNPQKNKEKI 125
Query: 125 AEIFFESFNVPALYVSMQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPHSIMRND 184
AE+FFE+FNVPAL++S+QA+LSLY+ G+T G VLD GDGV H V IYEG+++ ++I R D
Sbjct: 126 AEVFFETFNVPALFISIQAILSLYSCGKTNGTVLDCGDGVCHCVSIYEGYSITNTITRTD 185
Query: 185 IAGRDVTRYLKLLLRKEGVNFRTTAEFEIVRTIKEKACYLSSNPVKEETTDSEKHT---Y 241
+AGRD+T YL LLRK G F T+AE E+V+ +KE CY+S N KE+ + + T Y
Sbjct: 186 VAGRDITTYLGYLLRKNGHLFNTSAEMEVVKNMKENCCYVSFNMNKEKNSSEKALTTLPY 245
Query: 242 VLPDGSSLDIGHARFRAPEVLFRPDLIGEESEGIHDVLYYAIQKSDLDLRKVLYQNIVLS 301
+LPDGS + IG R+RAPEVLF P ++G E G+ +++ +I ++D+DLR+ LY +IVLS
Sbjct: 246 ILPDGSQILIGSERYRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLS 305
Query: 302 GGSTLFKGFGDRLLAEIRKNAPKDLKIRISAPQERLYSTWIGGSILASLDTFKRMWVSKR 361
GG+T+F GFGDRLL EIRK APKD+ IRISAP ER +ST+IGGSILASL TFK++W+SK+
Sbjct: 306 GGTTMFHGFGDRLLNEIRKFAPKDITIRISAPPERKFSTFIGGSILASLATFKKIWISKQ 365
Query: 362 EFDEDGKRAIHRKTF 376
EFDE G +HRKTF
Sbjct: 366 EFDEYGSVILHRKTF 380
>gnl|CDD|214592 smart00268, ACTIN, Actin. ACTIN subfamily of
ACTIN/mreB/sugarkinase/Hsp70 superfamily.
Length = 373
Score = 540 bits (1394), Expect = 0.0
Identities = 211/375 (56%), Positives = 281/375 (74%), Gaps = 9/375 (2%)
Query: 9 NQPVVIDNGSGVIKAGFAGDQVPKCCFPNYIGRPKHIRVMAGALEGDIFVGPKAEEHRGL 68
+VIDNGSG IKAGFAG+ P+ FP+ +GRPK + M G DIFVG +A+E RG
Sbjct: 1 VPAIVIDNGSGTIKAGFAGEDFPQVVFPSIVGRPKDGKGMVG-DAKDIFVGDEAQEKRGG 59
Query: 69 LSIHYPMEHGIITDWNDMERIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNREKAAEIF 128
L + YP+E+GI+ +W+DME+IW Y + N +L+ EEHPVLLTE P+NP+ NREK EI
Sbjct: 60 LELKYPIENGIVENWDDMEKIWDYTFFN-ELRVEPEEHPVLLTEPPMNPKSNREKILEIM 118
Query: 129 FESFNVPALYVSMQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPHSIMRNDIAGR 188
FE+FN PALY+++QAVLSLYA+GRTTG+V+DSGDGVTH VP+ +G+ +PH+I R DIAGR
Sbjct: 119 FETFNFPALYIAIQAVLSLYASGRTTGLVIDSGDGVTHVVPVVDGYVLPHAIKRIDIAGR 178
Query: 189 DVTRYLKLLLRKEGVNFRTTAEFEIVRTIKEKACYLSSNPVKEETTDSEKH-------TY 241
D+T YLK LL + G F ++AEFEIVR IKEK CY++ + KE E TY
Sbjct: 179 DITDYLKELLSERGYQFNSSAEFEIVREIKEKLCYVAEDFEKEMKLARESSESSKLEKTY 238
Query: 242 VLPDGSSLDIGHARFRAPEVLFRPDLIGEESEGIHDVLYYAIQKSDLDLRKVLYQNIVLS 301
LPDG+++ +G+ RFR PE+LF P+LIG E +GIH+++Y +IQK D+D+RK LY+NIVLS
Sbjct: 239 ELPDGNTIKVGNERFRIPEILFSPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLS 298
Query: 302 GGSTLFKGFGDRLLAEIRKNAPKDLKIRISAPQERLYSTWIGGSILASLDTFKRMWVSKR 361
GGSTL GFG+RL E+++ APK LK+++ AP ER YS W+GGSILASL TF+ MW++K+
Sbjct: 299 GGSTLIPGFGERLEKELKQLAPKKLKVKVIAPPERKYSVWLGGSILASLSTFEDMWITKK 358
Query: 362 EFDEDGKRAIHRKTF 376
E++E G + + RK F
Sbjct: 359 EYEESGSQIVERKCF 373
>gnl|CDD|200935 pfam00022, Actin, Actin.
Length = 367
Score = 527 bits (1359), Expect = 0.0
Identities = 187/371 (50%), Positives = 251/371 (67%), Gaps = 9/371 (2%)
Query: 9 NQPVVIDNGSGVIKAGFAGDQVPKCCFPNYIGRPKHIRVMAGALEGDIFVGPKAEEHRGL 68
+VIDNGSG KAGFAG+ P+ P+ +GRP+ VM +VG +A R
Sbjct: 3 VSALVIDNGSGTTKAGFAGEDAPRAVIPSVVGRPRGRGVMV-----KYYVGDEALSKRPG 57
Query: 69 LSIHYPMEHGIITDWNDMERIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNREKAAEIF 128
L + YP+E GI+ +W+ ME+IW++ + + L+ EEHP+LLTE PLNP NREKA EI
Sbjct: 58 LEVRYPIEDGIVENWDAMEKIWEHTFFEE-LRVDPEEHPLLLTEPPLNPPANREKATEIM 116
Query: 129 FESFNVPALYVSMQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPHSIMRNDIAGR 188
FE+F VPALY++ QAVLS YA+GRTTG+V+DSG GVT VP+YEG+ + +I R+D+AG
Sbjct: 117 FETFGVPALYLAKQAVLSAYASGRTTGLVVDSGAGVTSVVPVYEGYVLQKAIRRSDLAGD 176
Query: 189 DVTRYLKLLLRKEGVNFRTTAEFEIVRTIKEKACYLSSNPVKEETTDSE--KHTYVLPDG 246
D+T YL+ LL +F T AE E+VR IKE CY+S +P + S +Y LPDG
Sbjct: 177 DLTDYLRKLLSSRTYSFNTYAEEEVVRDIKESLCYVSDDPFGDTAASSSPPTVSYELPDG 236
Query: 247 SSLDIGHARFRAPEVLFRPDLIGEESEGIHDVLYYAIQKSDLDLRKVLYQNIVLSGGSTL 306
+ +G+ RFR PE+LF P LIG ES GI +++Y +I D+DLR L NIV++GG+TL
Sbjct: 237 YVIILGNERFRVPEILFNPSLIGSESAGIPELIYDSINACDVDLRPSLLANIVVTGGTTL 296
Query: 307 FKGFGDRLLAEIRKNAPKDLKIRISAPQ-ERLYSTWIGGSILASLDTFKRMWVSKREFDE 365
F GF +RL E+ + AP +K++I AP ER YS WIGGSILASL TF++MWVSK+E++E
Sbjct: 297 FPGFTERLEKELAQLAPSGVKVKIIAPPNERKYSAWIGGSILASLGTFQQMWVSKQEYEE 356
Query: 366 DGKRAIHRKTF 376
G + RK F
Sbjct: 357 HGSSVVERKCF 367
>gnl|CDD|240225 PTZ00004, PTZ00004, actin-2; Provisional.
Length = 378
Score = 463 bits (1192), Expect = e-163
Identities = 207/374 (55%), Positives = 279/374 (74%), Gaps = 9/374 (2%)
Query: 10 QPVVIDNGSGVIKAGFAGDQVPKCCFPNYIGRPKHIRVMAGALEGDIFVGPKAEEHRGLL 69
V+DNGSG++KAGFAGD P+C FP+ +GRPK+ +M G E D +VG +A++ RG+L
Sbjct: 7 NAAVVDNGSGMVKAGFAGDDAPRCVFPSIVGRPKNPGIMVGMEEKDCYVGDEAQDKRGIL 66
Query: 70 SIHYPMEHGIITDWNDMERIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNREKAAEIFF 129
++ YP+EHGI+T+W+DME+IW + + N+ L+ EEHPVLLTEAPLNP+ NREK +I F
Sbjct: 67 TLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMF 125
Query: 130 ESFNVPALYVSMQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPHSIMRNDIAGRD 189
E+ NVPA+YV++QAVLSLYA+GRTTG+VLDSGDGV+H VPIYEG+++PH+I R D+AGRD
Sbjct: 126 ETHNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYSLPHAIHRLDVAGRD 185
Query: 190 VTRYLKLLLRKEGVNFRTTAEFEIVRTIKEKACYLSSNPVKEETTDSEKHT------YVL 243
+T Y+ +L + G F TTAE EIVR IKEK CY++ + EE +S + Y L
Sbjct: 186 LTEYMMKILHERGTTFTTTAEKEIVRDIKEKLCYIALD-FDEEMGNSAGSSDKYEESYEL 244
Query: 244 PDGSSLDIGHARFRAPEVLFRPDLIG-EESEGIHDVLYYAIQKSDLDLRKVLYQNIVLSG 302
PDG+ + +G RFR PE LF+P LIG EE GIH++ + +I K D+D+RK LY NIVLSG
Sbjct: 245 PDGTIITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSG 304
Query: 303 GSTLFKGFGDRLLAEIRKNAPKDLKIRISAPQERLYSTWIGGSILASLDTFKRMWVSKRE 362
G+T+++G +RL E+ AP +KI++ AP ER YS WIGGSIL+SL TF++MWV+K E
Sbjct: 305 GTTMYRGLPERLTKELTTLAPSTMKIKVVAPPERKYSVWIGGSILSSLPTFQQMWVTKEE 364
Query: 363 FDEDGKRAIHRKTF 376
+DE G +HRK F
Sbjct: 365 YDESGPSIVHRKCF 378
>gnl|CDD|173506 PTZ00281, PTZ00281, actin; Provisional.
Length = 376
Score = 458 bits (1179), Expect = e-162
Identities = 210/380 (55%), Positives = 281/380 (73%), Gaps = 8/380 (2%)
Query: 1 MEPYDVIVNQPVVIDNGSGVIKAGFAGDQVPKCCFPNYIGRPKHIRVMAGALEGDIFVGP 60
M+ DV Q +VIDNGSG+ KAGFAGD P+ FP+ +GRP+H VM G + D +VG
Sbjct: 1 MDGEDV---QALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGD 57
Query: 61 KAEEHRGLLSIHYPMEHGIITDWNDMERIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRN 120
+A+ RG+L++ YP+EHGI+T+W+DME+IW + + N +L+ EEHPVLLTEAPLNP+ N
Sbjct: 58 EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTEAPLNPKAN 116
Query: 121 REKAAEIFFESFNVPALYVSMQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPHSI 180
REK +I FE+FN PA+YV++QAVLSLYA+GRTTG+V+DSGDGV+H VPIYEG+A+PH+I
Sbjct: 117 REKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAI 176
Query: 181 MRNDIAGRDVTRYLKLLLRKEGVNFRTTAEFEIVRTIKEKACYLSSNPVKE----ETTDS 236
+R D+AGRD+T Y+ +L + G +F TTAE EIVR IKEK Y++ + E ++ +
Sbjct: 177 LRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTAASSSA 236
Query: 237 EKHTYVLPDGSSLDIGHARFRAPEVLFRPDLIGEESEGIHDVLYYAIQKSDLDLRKVLYQ 296
+ +Y LPDG + IG+ RFR PE LF+P +G ES GIH+ Y +I K D+D+RK LY
Sbjct: 237 LEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYG 296
Query: 297 NIVLSGGSTLFKGFGDRLLAEIRKNAPKDLKIRISAPQERLYSTWIGGSILASLDTFKRM 356
N+VLSGG+T+F G DR+ E+ AP +KI+I AP ER YS WIGGSILASL TF++M
Sbjct: 297 NVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQM 356
Query: 357 WVSKREFDEDGKRAIHRKTF 376
W+SK E+DE G +HRK F
Sbjct: 357 WISKEEYDESGPSIVHRKCF 376
>gnl|CDD|227602 COG5277, COG5277, Actin and related proteins [Cytoskeleton].
Length = 444
Score = 359 bits (923), Expect = e-122
Identities = 172/437 (39%), Positives = 242/437 (55%), Gaps = 71/437 (16%)
Query: 11 PVVIDNGSGVIKAGFAGDQVPKCCFPNYIGRPK-HIRVMAGALEGDIFVGPKAEEHRG-- 67
+VIDNGSG KAGFAG+ P FP+ +GR + VM E D +VG +A+ R
Sbjct: 8 TIVIDNGSGTTKAGFAGNDTPTTVFPSIVGRRRDEDSVMEDTEEKDTYVGNEAQNDRDNS 67
Query: 68 LLSIHYPMEHGIITDWNDMERIWQYVYSN-DQLQTFSEEHPVLLTEAPLNPRRNREKAAE 126
LL + YP+E+GII +W+ ME+IW Y + N L EEHP+LLTE PLNP NREK E
Sbjct: 68 LLELRYPIENGIILNWDAMEQIWDYTFFNKGDLLPSPEEHPLLLTEPPLNPPSNREKITE 127
Query: 127 IFFESFNVPALYVSMQAVLSLYATGRT--TGVVLDSGDGVTHAVPIYEGFAMPHSIMRND 184
+ FE+ NVPALY+++QAVLSLYA+G + TG+V+DSGD VTH +P+ +G +P ++ R D
Sbjct: 128 LLFETLNVPALYLAIQAVLSLYASGSSDETGLVIDSGDSVTHVIPVVDGIVLPKAVKRID 187
Query: 185 IAGRDVTRYLKLLLRKEGVNFR--------TTAEFEIVRTIKEKAC-------YLSSNPV 229
I GRD+T YLK LLR++ R EIV IKE+ C Y+S +
Sbjct: 188 IGGRDITDYLKKLLREKYPPSRGYNLKSELVEYSSEIVNEIKEEVCETDDESAYVSLDAE 247
Query: 230 KE--------------------ETTDSEKHTYVLPDGSSLDIG-HARFRAPEVLFRPDLI 268
+E + T K + LPDG ++ G RF+APE+LF+P+L
Sbjct: 248 EEFEEEEEKPAEKSTESTFQLSKETSIAKESKELPDGEEIEFGNEERFKAPEILFKPELP 307
Query: 269 GEESE-----------------------------GIHDVLYYAIQKSDLDLRKVLYQNIV 299
E G+ +++Y +IQ D D+RK LY NIV
Sbjct: 308 ISGLEEAGKIDESKQELVAENYEISPTNLGNDIAGLPELVYQSIQICDEDVRKSLYSNIV 367
Query: 300 LSGGSTLFKGFGDRLLAEIRKNAPKDLKIRISAPQERLYSTWIGGSILASLDTFKRMWVS 359
L+GG++ GF +RL E+ AP K+ + P + W+G SILASL+TF+++W++
Sbjct: 368 LTGGTSKIPGFAERLQKELTSLAPSIWKVSVIPPPDPSLDAWLGASILASLETFQQLWIT 427
Query: 360 KREFDEDGKRAIHRKTF 376
K E++E G + K F
Sbjct: 428 KEEYEEHGPDILQEKRF 444
>gnl|CDD|185631 PTZ00452, PTZ00452, actin; Provisional.
Length = 375
Score = 351 bits (901), Expect = e-120
Identities = 166/369 (44%), Positives = 241/369 (65%), Gaps = 5/369 (1%)
Query: 12 VVIDNGSGVIKAGFAGDQVPKCCFPNYIGRPKHIRVMAGALEGDIFVGPKAEEHRGLLSI 71
VVIDNGSG K G AGD P CFP +GR K + + +VG +A+ RG+L+I
Sbjct: 8 VVIDNGSGYCKIGIAGDDAPTSCFPAIVGRSKQNDGIFSTFNKEYYVGEEAQAKRGVLAI 67
Query: 72 HYPMEHGIITDWNDMERIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNREKAAEIFFES 131
P+++GII W+D+E IW + + N +L E+ PV +T+AP+N + NRE+ +I FE+
Sbjct: 68 KEPIQNGIINSWDDIEIIWHHAFYN-ELCMSPEDQPVFMTDAPMNSKFNRERMTQIMFET 126
Query: 132 FNVPALYVSMQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPHSIMRNDIAGRDVT 191
FN P LY+S +AVLSLY +G+T G+V+DSG+GVTH VP++EG +P +I + ++AGR T
Sbjct: 127 FNTPCLYISNEAVLSLYTSGKTIGLVVDSGEGVTHCVPVFEGHQIPQAITKINLAGRLCT 186
Query: 192 RYLKLLLRKEGVNFRTTAEFEIVRTIKEKACYLSSNPVKEE----TTDSEKHTYVLPDGS 247
YL +L++ G + + IV+ IKE+ CY + +P E+ ++S+ Y LPDG+
Sbjct: 187 DYLTQILQELGYSLTEPHQRIIVKNIKERLCYTALDPQDEKRIYKESNSQDSPYKLPDGN 246
Query: 248 SLDIGHARFRAPEVLFRPDLIGEESEGIHDVLYYAIQKSDLDLRKVLYQNIVLSGGSTLF 307
L I +FR E+LF+P LIG E GIH + Y +I+K DLDLR+ L +NIVLSGG+TLF
Sbjct: 247 ILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLF 306
Query: 308 KGFGDRLLAEIRKNAPKDLKIRISAPQERLYSTWIGGSILASLDTFKRMWVSKREFDEDG 367
G +RL E+ P LKI+++AP +R +S WIGGSI +L T + W+ ++E+DE G
Sbjct: 307 PGIANRLSNELTNLVPSQLKIQVAAPPDRRFSAWIGGSIQCTLSTQQPQWIKRQEYDEQG 366
Query: 368 KRAIHRKTF 376
+HRK F
Sbjct: 367 PSIVHRKCF 375
>gnl|CDD|240343 PTZ00280, PTZ00280, Actin-related protein 3; Provisional.
Length = 414
Score = 306 bits (786), Expect = e-102
Identities = 150/397 (37%), Positives = 223/397 (56%), Gaps = 43/397 (10%)
Query: 12 VVIDNGSGVIKAGFAGDQVPKCCFPNYIG-RPKHIRVMA--GALEGDIFVGPKAEEHRGL 68
VVIDNG+G K G+AG+ P P I K R + G + D ++G +A
Sbjct: 7 VVIDNGTGYTKMGYAGNTEPTYIIPTLIADNSKQSRRRSKKGFEDLDFYIGDEALAASKS 66
Query: 69 LSIHYPMEHGIITDWNDMERIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNREKAAEIF 128
++ YPM+HGI+ DW+ ME+ W+ L+ EEH +LTE P+NP NRE AEI
Sbjct: 67 YTLTYPMKHGIVEDWDLMEKFWEQCIF-KYLRCEPEEHYFILTEPPMNPPENREYTAEIM 125
Query: 129 FESFNVPALYVSMQAVLSLYAT----------GRTTGVVLDSGDGVTHAVPIYEGFAMPH 178
FE+FNV LY+++QAVL+L A+ G TG V+DSGDGVTH +P+ +G+ +
Sbjct: 126 FETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTGTVIDSGDGVTHVIPVVDGYVIGS 185
Query: 179 SIMRNDIAGRDVTRYLKLLLRKEGVNFRTTAEFEIVRTIKEKACYLSSNPVKE-ETTDSE 237
SI +AGRD+T +++ +LR+ G + + IKEK CY++ + KE E DS+
Sbjct: 186 SIKHIPLAGRDITNFIQQMLRERGEPIPAEDILLLAQRIKEKYCYVAPDIAKEFEKYDSD 245
Query: 238 ------KHTYVLP---DGSSLDIGHARFRAPEVLFRPDLIGEE-SEGIHDVLYYAIQKSD 287
K+T V ++D+G+ RF PE+ F P++ E + + +V+ AIQ
Sbjct: 246 PKNHFKKYTAVNSVTKKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCP 305
Query: 288 LDLRKVLYQNIVLSGGSTLFKGFGDRLLAEIRK----------------NAPKDLKIR-I 330
+D R+ LY+NIVLSGGST+FKGF RL ++RK P + + +
Sbjct: 306 IDCRRPLYKNIVLSGGSTMFKGFDKRLQRDVRKRVDRRLKKAEELSGGKLKPIPIDVNVV 365
Query: 331 SAPQERLYSTWIGGSILASLDTFKRMWVSKREFDEDG 367
S P++R Y+ W GGS+LAS F+++ +K E+DE G
Sbjct: 366 SHPRQR-YAVWYGGSMLASSPEFEKVCHTKAEYDEYG 401
>gnl|CDD|212657 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-Binding Domain of
the sugar kinase/HSP70/actin superfamily. This
superfamily includes the actin family, the HSP70 family
of molecular chaperones and nucleotide exchange factors,
the ROK (repressor, ORF, kinase) family, the hexokinase
family, the FGGY family (which includes glycerol kinase
and similar carbohydrate kinases such as rhamnulokinase
and xylulokinase), the exopolyphosphatase/guanosine
pentaphosphate phosphohydrolase/nucleoside triphosphate
diphosphohydrolase family, propionate kinase/acetate
kinase family, glycerol dehydratase reactivase,
2-hydroxyglutaryl-CoA dehydratase component A,
N-acetylglucosamine kinase, butyrate kinase 2,
Escherichia coli YeaZ and similar glycoproteases, the
cell shape-determining protein MreB, the plasmid DNA
segregation factor ParM, cell cycle proteins FtsA, Pili
assembly protein PilM, ethanolamine utilization protein
EutJ, and similar proteins. The nucleotide-binding site
residues are conserved; the nucleotide sits in a deep
cleft formed between the two lobes of the
nucleotide-binding domain (NBD). Substrate binding to
superfamily members is associated with closure of this
catalytic site cleft. The functional activities of
several members of the superfamily, including
hexokinases, actin, and HSP70s, are modulated by
allosteric effectors, which may act on the cleft
closure.
Length = 185
Score = 79.9 bits (197), Expect = 1e-17
Identities = 43/192 (22%), Positives = 64/192 (33%), Gaps = 52/192 (27%)
Query: 12 VVIDNGSGVIKAGFA---GDQVPKCCFPNYIGRPKHIRVMAGALEGDIFVGPKAEEHRGL 68
+ ID GS KAG A G+ +P+ P +GRP
Sbjct: 1 LGIDIGSTSTKAGVADLDGEILPEEIVPTPVGRP-------------------------- 34
Query: 69 LSIHYPMEHGIITDWNDMERIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNREKA---- 124
G +TD +++E + + Q SE V +TE P+ NRE
Sbjct: 35 ---------GAVTDLDELEEALRELLKEALRQLKSEIDAVGITEPGGVPKENREVIILPN 85
Query: 125 -----AEIFFESFNVPALYVSMQAVLSLYATGRT-----TGVVLDSGDGVTHAVPIYEGF 174
+ E + V AV + A G T +V+D G G T + +G
Sbjct: 86 LLLIPLALALEDLGGVPVAVVNDAVAAALAEGLFGKEEDTVLVVDLGTGTTGIAIVEDGK 145
Query: 175 AMPHSIMRNDIA 186
+ IA
Sbjct: 146 GGVGAAGELGIA 157
>gnl|CDD|213905 TIGR04292, heavy_Cys_GCP, heavy-Cys/GCP-CTERM domain protein.
Members of this protein family are restricted to the
Pyrococcus and Thermococcus genera of the archaea.
Member proteins have a C-terminal, Cys-containing
predicted surface anchor domain, where the Cys may be
the site of cleavage and lipid attachment (see domain
TIGR04288). Members also contain a region crowded with
10 invariant Cys in 60 residues (see domain TIGR04289),
possible ligands to some redox cofactor.
Length = 381
Score = 32.4 bits (74), Expect = 0.38
Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 296 QNIVLSGGSTLFKGFGDRLLAEIRKNAPKDLKIRISAPQER----LYSTWIGGSILASLD 351
+N+++ G+ +++ D L I N L +RI P + +Y G + + D
Sbjct: 33 KNVIIENGTIIYRSHYDPRLIVILWNGDSGLHVRIQIPTKFKESKIYVAEFEGILPITED 92
Query: 352 TFKR 355
++
Sbjct: 93 ALEK 96
>gnl|CDD|241420 cd13266, PH_Skap_family, Src kinase-associated phosphoprotein
family Pleckstrin homology (PH) domain. Skap adaptor
proteins couple receptors to cytoskeletal
rearrangements. Src kinase-associated phosphoprotein of
55 kDa (Skap55)/Src kinase-associated phosphoprotein 1
(Skap1), Skap2, and Skap-homology (Skap-hom) have an
N-terminal coiled-coil conformation, a central PH domain
and a C-terminal SH3 domain. Their PH domains bind
3'-phosphoinositides as well as directly affecting
targets such as in Skap55 where it directly affecting
integrin regulation by ADAP and NF-kappaB activation or
in Skap-hom where the dimerization and PH domains
comprise a 3'-phosphoinositide-gated molecular switch
that controls ruffle formation. PH domains are only
found in eukaryotes. They share little sequence
conservation, but all have a common fold, which is
electrostatically polarized. PH domains have diverse
functions, but in general are involved in targeting
proteins to the appropriate cellular location or in the
interaction with a binding partner. They share little
sequence conservation, but all have a common fold, which
is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with
high affinity and specificity. PH domains are
distinguished from other PIP-binding domains by their
specific high-affinity binding to PIPs with two vicinal
phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or
PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 106
Score = 28.2 bits (63), Expect = 2.6
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 303 GSTLFKGFGDRLLAEIRKNAPKDLKIRISAPQERLY 338
G G+ R+ +RK++ KD ISAP +R+Y
Sbjct: 46 GEFAIDGYRARMNPTLRKDSKKDCCFEISAPDKRVY 81
>gnl|CDD|241532 cd13381, PH_Skap-hom_Skap2, Src kinase-associated phosphoprotein
homolog and Skap 2 Pleckstrin homology (PH) domain.
Adaptor protein Skap-hom, a homolog of Skap55, which
interacts with actin and with ADAP (adhesion and
degranulation promoting adapter protein) undergoes
tyrosine phosphorylation in response to plating of bone
marrow-derived macrophages on fibronectin. Skap-hom has
an N-terminal coiled-coil conformation that is involved
in homodimer formation, a central PH domain and a
C-terminal SH3 domain that associates with ADAP. The
Skap-hom PH domain regulates intracellular targeting;
its interaction with the DM domain inhibits Skap-hom
actin-based ruffles in macrophages and its binding to
3'-phosphoinositides reverses this autoinhibition. The
Skap-hom PH domain binds PI[3,4]P2 and PI[3,4,5]P3, but
not to PI[3]P, PI[5]P, or PI[4,5]P2. Skap2 is a
downstream target of Heat shock transcription factor 4
(HSF4) and functions in the regulation of actin
reorganization during lens differentiation. It is
thought that SKAP2 anchors the complex of tyrosine
kinase adaptor protein 2 (NCK20/focal adhesion to
fibroblast growth factor receptors at the lamellipodium
in lens epithelial cells. Skap2 has an N-terminal
coiled-coil conformation which interacts with the SH2
domain of NCK2, a central PH domain and a C-terminal SH3
domain that associates with ADAP (adhesion and
degranulation promoting adapter protein)/FYB (the Fyn
binding protein). Skap2 PH domain binds to membrane
lipids. Skap adaptor proteins couple receptors to
cytoskeletal rearrangements. Src kinase-associated
phosphoprotein of 55 kDa (Skap55)/Src kinase-associated
phosphoprotein 1 (Skap1), Skap2, and Skap-hom have an
N-terminal coiled-coil conformation, a central PH domain
and a C-terminal SH3 domain. Their PH domains bind
3'-phosphoinositides as well as directly affecting
targets such as in Skap55 where it directly affecting
integrin regulation by ADAP and NF-kappaB activation or
in Skap-hom where the dimerization and PH domains
comprise a 3'-phosphoinositide-gated molecular switch
that controls ruffle formation. PH domains have diverse
functions, but in general are involved in targeting
proteins to the appropriate cellular location or in the
interaction with a binding partner. They share little
sequence conservation, but all have a common fold, which
is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with
high affinity and specificity. PH domains are
distinguished from other PIP-binding domains by their
specific high-affinity binding to PIPs with two vicinal
phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or
PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 106
Score = 28.0 bits (62), Expect = 3.3
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 309 GFGDRLLAEIRKNAPKDLKIRISAPQERLY 338
G+ R+ +RK+A KD ISAP +R+Y
Sbjct: 52 GYTVRMNNTLRKDAKKDCCFEISAPDKRIY 81
>gnl|CDD|234039 TIGR02866, CoxB, cytochrome c oxidase, subunit II. Cytochrome c
oxidase is the terminal electron acceptor of
mitochondria (and one of several possible acceptors in
prokaryotes) in the electron transport chain of aerobic
respiration. The enzyme couples the oxidation of reduced
cytochrome c with the reduction of molecular oxygen to
water. This process results in the pumping of four
protons across the membrane which are used in the proton
gradient powered synthesis of ATP. The oxidase contains
two heme a cofactors and three copper atoms as well as
other bound ions [Energy metabolism, Electron
transport].
Length = 199
Score = 28.9 bits (65), Expect = 3.5
Identities = 28/137 (20%), Positives = 50/137 (36%), Gaps = 24/137 (17%)
Query: 56 IFVGPKAEEHRGLLSIHYPMEHGIIT------DWNDMERIWQYVYSNDQLQTFSEEHPVL 109
I VG A +GLL + P+ + W W + Y F+ + ++
Sbjct: 67 IVVGLFAATAKGLLYLERPIPKDALKVKVTGYQWW-----WDFEYPE---SGFTTVNELV 118
Query: 110 LTEAPLNPRRNREKAAEIFFESFNVPALYVSMQAVLSLYATGRTTGVVLDSGD-GVTHAV 168
L P + ++ SF VP L + A+ G+T + ++ + GV +
Sbjct: 119 L---PAGTPVELQVTSKDVIHSFWVPELGGKIDAI-----PGQTNALWFNADEPGVYYGF 170
Query: 169 PIYEGFAMPHSIMRNDI 185
E HS+M +
Sbjct: 171 -CAELCGAGHSLMLFKV 186
>gnl|CDD|212668 cd10225, MreB_like, MreB and similar proteins. MreB is a
bacterial protein which assembles into filaments
resembling those of eukaryotic F-actin. It is involved
in determining the shape of rod-like bacterial cells,
by assembling into large fibrous spirals beneath the
cell membrane. MreB has also been implicated in
chromosome segregation; specifically MreB is thought to
bind to and segregate the replication origin of
bacterial chromosomes.
Length = 320
Score = 29.3 bits (67), Expect = 3.5
Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 34/92 (36%)
Query: 5 DVIVNQP--VVIDNGSGVIKAGFAGDQVPKCCFPNYIGR-PKHIRVMAGALEGDIFVGPK 61
+++N+P V ID +G I A G++ + +GR P +I V+
Sbjct: 18 GIVLNEPSVVAIDTKTGKILA--VGEEAKE-----MLGRTPGNIEVI------------- 57
Query: 62 AEEHRGLLSIHYPMEHGIITDWNDMERIWQYV 93
P++ G+I D+ E + +Y
Sbjct: 58 -----------RPLKDGVIADFEATEAMLRYF 78
>gnl|CDD|115278 pfam06608, DUF1143, Protein of unknown function (DUF1143). This
family consists of several hypothetical mammalian
proteins (from mouse and human). The function of this
family is unknown.
Length = 149
Score = 28.1 bits (62), Expect = 5.2
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 70 SIHYPMEHG-IITDWNDMERIWQY 92
SI HG + TDWNDM + +QY
Sbjct: 29 SIINADGHGEVWTDWNDMSKFFQY 52
>gnl|CDD|181001 PRK07494, PRK07494, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Provisional.
Length = 388
Score = 28.3 bits (64), Expect = 6.3
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 249 LDIGHARFRAPEVLFRPDLIGEESEG 274
+D RAPEV FR IGE++ G
Sbjct: 80 VDATGRLIRAPEVRFRAAEIGEDAFG 105
>gnl|CDD|212680 cd10238, HSPA14-like_NBD, Nucleotide-binding domain of human HSPA14
and similar proteins. Human HSPA14 (also known as
70-kDa heat shock protein 14, HSP70L1, HSP70-4; the gene
encoding HSPA14 maps to 10p13), is ribosome-associated
and belongs to the heat shock protein 70 (HSP70) family
of chaperones that assist in protein folding and
assembly, and can direct incompetent "client" proteins
towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs). HSPA14
interacts with the J-protein MPP11 to form the mammalian
ribosome-associated complex (mRAC). HSPA14 participates
in a pathway along with Nijmegen breakage syndrome 1
(NBS1, also known as p85 or nibrin), heat shock
transcription factor 4b (HSF4b), and HSPA4 (belonging to
a different subfamily), that induces tumor migration,
invasion, and transformation. HSPA14 is a potent T
helper cell (Th1) polarizing adjuvant that contributes
to antitumor immune responses.
Length = 375
Score = 28.5 bits (64), Expect = 7.0
Identities = 29/112 (25%), Positives = 45/112 (40%), Gaps = 19/112 (16%)
Query: 143 AVLSLYATGRTTGVVLDSGDGVTHAVPIYE------GFAMPHSIMRNDIAGRDVTRYLKL 196
A L++Y GR V D+GD VT AV + G A +RN A + + ++
Sbjct: 12 ACLAVYKDGRADVVANDAGDRVTPAVVAFTDTEVIVGLAAKQGRIRN--AANTIVKNKQI 69
Query: 197 LLRKEGVNFRTTAEFEIVRTIKEKACYL---SSNPVKEETTDSEKHTYVLPD 245
L R ++ + E +C + P E T+ EK +V P
Sbjct: 70 LGRS-------YSDPFKQKEKTESSCKIIEKDGEPKYEIFTE-EKTKHVSPK 113
>gnl|CDD|148397 pfam06767, Sif, Sif protein. This family consists of several SifA
and SifB and SseJ proteins which seem to be specific to
the Salmonella species. SifA, SifB and SseJ have been
demonstrated to localise to the Salmonella-containing
vacuole (SCV) and to Salmonella-induced filaments
(Sifs). Trafficking of SseJ and SifB away from the SCV
requires the SPI-2 effector SifA. SseJ trafficking away
from the SCV along Sifs is unnecessary for its virulence
function.
Length = 336
Score = 27.9 bits (62), Expect = 8.1
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 87 ERIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNREKAAEIFFE 130
ERI + +S + + S H +L + P RE+ EIFFE
Sbjct: 32 ERIKDFFFSTGKAKADSCLHEMLFADPP----PTRERLTEIFFE 71
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.138 0.412
Gapped
Lambda K H
0.267 0.0756 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,945,960
Number of extensions: 1990984
Number of successful extensions: 1667
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1636
Number of HSP's successfully gapped: 30
Length of query: 376
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 278
Effective length of database: 6,590,910
Effective search space: 1832272980
Effective search space used: 1832272980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.8 bits)