RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16631
(376 letters)
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to
bistramide A, structural protein; HET: HIC ATP BID;
1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1
PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1*
1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0*
1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A*
...
Length = 375
Score = 598 bits (1543), Expect = 0.0
Identities = 211/372 (56%), Positives = 277/372 (74%), Gaps = 5/372 (1%)
Query: 9 NQPVVIDNGSGVIKAGFAGDQVPKCCFPNYIGRPKHIRVMAGALEGDIFVGPKAEEHRGL 68
+V DNGSG++KAGFAGD P+ FP+ +GRP+H VM G + D +VG +A+ RG+
Sbjct: 5 TTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 64
Query: 69 LSIHYPMEHGIITDWNDMERIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNREKAAEIF 128
L++ YP+EHGIIT+W+DME+IW + + N +L+ EEHP LLTEAPLNP+ NREK +I
Sbjct: 65 LTLKYPIEHGIITNWDDMEKIWHHTFYN-ELRVAPEEHPTLLTEAPLNPKANREKMTQIM 123
Query: 129 FESFNVPALYVSMQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPHSIMRNDIAGR 188
FE+FNVPA+YV++QAVLSLYA+GRTTG+VLDSGDGVTH VPIYEG+A+PH+IMR D+AGR
Sbjct: 124 FETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGR 183
Query: 189 DVTRYLKLLLRKEGVNFRTTAEFEIVRTIKEKACYLSSNPVKE----ETTDSEKHTYVLP 244
D+T YL +L + G +F TTAE EIVR IKEK CY++ + E ++ S + +Y LP
Sbjct: 184 DLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELP 243
Query: 245 DGSSLDIGHARFRAPEVLFRPDLIGEESEGIHDVLYYAIQKSDLDLRKVLYQNIVLSGGS 304
DG + IG+ RFR PE LF+P IG ES GIH+ Y +I K D+D+RK LY N V+SGG+
Sbjct: 244 DGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGT 303
Query: 305 TLFKGFGDRLLAEIRKNAPKDLKIRISAPQERLYSTWIGGSILASLDTFKRMWVSKREFD 364
T++ G DR+ EI AP +KI+I AP ER YS WIGGSILASL TF++MW++K+E+D
Sbjct: 304 TMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYD 363
Query: 365 EDGKRAIHRKTF 376
E G +HRK F
Sbjct: 364 EAGPSIVHRKCF 375
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein;
2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B*
2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B*
3dxm_B* 3rse_B 2p9k_B*
Length = 394
Score = 586 bits (1513), Expect = 0.0
Identities = 161/388 (41%), Positives = 233/388 (60%), Gaps = 18/388 (4%)
Query: 5 DVIVNQPVVIDNGSGVIKAGFAGDQVPKCCFPNYIGRPK--HIRVMAGALEGDIFVGPKA 62
D + VV DNG+G +K G+AG P+ FP +GRP + D+ VG +A
Sbjct: 2 DSQGRKVVVCDNGTGFVKCGYAGSNFPEHIFPALVGRPIIRSTTKVGNIEIKDLMVGDEA 61
Query: 63 EEHRGLLSIHYPMEHGIITDWNDMERIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNRE 122
E R +L ++YPME+GI+ +W+DM+ +W Y + ++L + +LLTE P+NP +NRE
Sbjct: 62 SELRSMLEVNYPMENGIVRNWDDMKHLWDYTFGPEKLNIDTRNCKILLTEPPMNPTKNRE 121
Query: 123 KAAEIFFESFNVPALYVSMQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPHSIMR 182
K E+ FE++ +YV++QAVL+LYA G TGVV+DSGDGVTH P+YEGF++PH R
Sbjct: 122 KIVEVMFETYQFSGVYVAIQAVLTLYAQGLLTGVVVDSGDGVTHICPVYEGFSLPHLTRR 181
Query: 183 NDIAGRDVTRYLKLLLRKEGVNFRTTAEFEIVRTIKEKACYLSSNPVKEETTDSE----K 238
DIAGRD+TRYL LL G F +A+FE VR IKEK CY+ N +E+ E
Sbjct: 182 LDIAGRDITRYLIKLLLLRGYAFNHSADFETVRMIKEKLCYVGYNIEQEQKLALETTVLV 241
Query: 239 HTYVLPDGSSLDIGHARFRAPEVLFRPDLIGEESEGIHDVLYYAIQKSDLDLRKVLYQNI 298
+Y LPDG + +G RF APE LF+P LI E G+ ++L+ IQ +D+D R Y++I
Sbjct: 242 ESYTLPDGRIIKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHI 301
Query: 299 VLSGGSTLFKGFGDRLLAEIRK-----------NAPKDLKIRISAPQERLYSTWIGGSIL 347
VLSGGST++ G RL E+++ KIRI P R + ++GG++L
Sbjct: 302 VLSGGSTMYPGLPSRLERELKQLYLERVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGAVL 361
Query: 348 ASLDTFK-RMWVSKREFDEDGKRAIHRK 374
A + K W++++E+ E G R + +
Sbjct: 362 ADIMKDKDNFWMTRQEYQEKGVRVLEKL 389
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural
protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB:
1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A*
2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A
Length = 418
Score = 563 bits (1454), Expect = 0.0
Identities = 140/411 (34%), Positives = 214/411 (52%), Gaps = 47/411 (11%)
Query: 10 QPVVIDNGSGVIKAGFAGDQVPKCCFPNYIGR--------PKHIRVMAGALEGDIFVGPK 61
V+D G+G K G+AG+ P+ P+ I RVM G + D F+G +
Sbjct: 6 PACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGDE 65
Query: 62 AEEHRGLLSIHYPMEHGIITDWNDMERIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNR 121
A E + +P+ HGI+ DW+ MER + V L+ E+H LLTE PLN NR
Sbjct: 66 AIEKPTY-ATKWPIRHGIVEDWDLMERFMEQVIFK-YLRAEPEDHYFLLTEPPLNTPENR 123
Query: 122 EKAAEIFFESFNVPALYVSMQAVLSLYATGRT--------TGVVLDSGDGVTHAVPIYEG 173
E AEI FESFNVP LY+++QAVL+L A+ + TG V+DSGDGVTH +P+ EG
Sbjct: 124 EYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGTVIDSGDGVTHVIPVAEG 183
Query: 174 FAMPHSIMRNDIAGRDVTRYLKLLLRKEGVNFRTTAEFEIVRTIKEKACYLSSNPVKE-- 231
+ + I IAGRD+T +++ LLR V E + +KE+ Y+ + VKE
Sbjct: 184 YVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKERYSYVCPDLVKEFN 243
Query: 232 ----ETTDSEKHTYVLPDGSS-----LDIGHARFRAPEVLFRPDLIG-EESEGIHDVLYY 281
+ + K Y + S +D+G+ RF PE+ F P+ + ++ I +V+
Sbjct: 244 KYDTDGSKWIK-QYTGINAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDE 302
Query: 282 AIQKSDLDLRKVLYQNIVLSGGSTLFKGFGDRLLAEIRKN----------------APKD 325
IQ +D+R+ LY+NIVLSGGST+F+ FG RL ++++ PK
Sbjct: 303 VIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKP 362
Query: 326 LKIRISAPQERLYSTWIGGSILASLDTFKRMWVSKREFDEDGKRAIHRKTF 376
+ +++ + Y+ W GGS+LAS F ++ +K++++E G
Sbjct: 363 IDVQVITHHMQRYAVWFGGSMLASTPEFYQVCHTKKDYEEIGPSICRHNPV 413
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding,
cytoskeleton, nucleot binding, WD repeat; HET: ATP;
3.78A {Schizosaccharomyces pombe}
Length = 427
Score = 544 bits (1403), Expect = 0.0
Identities = 137/421 (32%), Positives = 213/421 (50%), Gaps = 58/421 (13%)
Query: 9 NQPVVIDNGSGVIKAGFAGDQVPKCCFPNYIGRPK----------------------HIR 46
N P+++DNG+G K G+AG+ P FP I H+
Sbjct: 5 NVPIIMDNGTGYSKLGYAGNDAPSYVFPTVIATRSAGASSGPAVSSKPSYMASKGSGHLS 64
Query: 47 VMAGALEGDIFVGPKA-EEHRGLLSIHYPMEHGIITDWNDMERIWQYVYSNDQLQTFSEE 105
+ D F+G A ++ S+ YP+ HG I +W+ MER WQ L+ E+
Sbjct: 65 SKRATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFK-YLRCEPED 123
Query: 106 HPVLLTEAPLNPRRNREKAAEIFFESFNVPALYVSMQAVLSLYATGRT--------TGVV 157
H LLTE PLNP NRE AEI FESFN LY+++QAVL+L A+ + TG V
Sbjct: 124 HYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTV 183
Query: 158 LDSGDGVTHAVPIYEGFAMPHSIMRNDIAGRDVTRYLKLLLRKEGVNFRTTAEFEIVRTI 217
+DSGDGVTH +P+ EG+ + SI +AGRDVT +++ LLR + + I
Sbjct: 184 VDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEPD---SSLKTAERI 240
Query: 218 KEKACYLSSNPVKEE---TTDSEKH-----TYVLPDGSSLDIGHARFRAPEVLFRPDLIG 269
KE+ CY+ + VKE + +++ + +++D+G RF APE+ F P++
Sbjct: 241 KEECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPEIAS 300
Query: 270 EES-EGIHDVLYYAIQKSDLDLRKVLYQNIVLSGGSTLFKGFGDRLLAEIRKNAPKDL-- 326
+ + +++ +Q S +D+RK LY+NIVLSGGSTLFK FG+RL ++++ + +
Sbjct: 301 SDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHR 360
Query: 327 ------------KIRISAPQERLYSTWIGGSILASLDTFKRMWVSKREFDEDGKRAIHRK 374
+ + + + + + W GGS+LA F +K +++E G R
Sbjct: 361 SEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARRY 420
Query: 375 T 375
Sbjct: 421 Q 421
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus,
structural protein; HET: ATP; 3.40A {Saccharomyces
cerevisiae}
Length = 498
Score = 363 bits (934), Expect = e-123
Identities = 71/359 (19%), Positives = 117/359 (32%), Gaps = 40/359 (11%)
Query: 10 QPVVIDNGSGVIKAGFAGDQVPKCCFPNYIGRPKHIRVMAGALEGDIFVGPKAEEHRGLL 69
VVID GS G++G P+ P+ G+ A IF R
Sbjct: 24 SAVVIDPGSYTTNIGYSGSDFPQSILPSVYGKY-----TADEGNKKIFSEQSIGIPRKDY 78
Query: 70 SIHYPMEHGIITDWNDMERIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNREKAAEIFF 129
+ +E+G++ DW+ + WQ+ N+ + P LLTE N NR+K+ E+
Sbjct: 79 ELKPIIENGLVIDWDTAQEQWQWALQNELYLNSNSGIPALLTEPVWNSTENRKKSLEVLL 138
Query: 130 ESFNVPALYVSMQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPHSIMRNDIAGRD 189
E A Y++ + +A GR +V+D G PI +G + S RN IAG+
Sbjct: 139 EGMQFEACYLAPTSTCVSFAAGRPNCLVVDIGHDTCSVSPIVDGMTLSKSTRRNFIAGKF 198
Query: 190 VTRYLKLLLRKEGVN-------------------------FRTTAEFEIVRTIKEKACYL 224
+ +K L + + + + KE C++
Sbjct: 199 INHLIKKALEPKEIIPLFAIKQRKPEFIKKTFDYEVDKSLYDYANNRGFFQECKETLCHI 258
Query: 225 SSNPVKE----ETTDSEKHTYVLPDGSSLDIGH-ARFRAPEVLFRPDLIGEESEGIHDVL 279
E E + + K + P + + R+ E LF P +
Sbjct: 259 CPTKTLEETKTELSSTAKRSIESPWNEEIVFDNETRYGFAEELFLPKEDDIPANWPRSNS 318
Query: 280 YYAIQKSDLDLRKVLYQNIVLSGGSTLFKGFGDRLLAEIRKNAPKDLKI--RISAPQER 336
+ V + SG + K E + P E
Sbjct: 319 GVVKTWRN---DYVPLKRTKPSGVNKSDKKVTPTEEKEQEAVSKSTSPAANSADTPNET 374
Score = 206 bits (526), Expect = 2e-62
Identities = 55/219 (25%), Positives = 88/219 (40%), Gaps = 8/219 (3%)
Query: 162 DGVTHAVPIYEGFAMPHSIMRNDIAGRDVTRYLKLLLRKEGVNFRTT-AEFEIVRTIKEK 220
+ + + + + +
Sbjct: 283 WNEEIVFDNETRYGFAEELFLPKEDDIPANWPRSNSGVVKTWRNDYVPLKRTKPSGVNKS 342
Query: 221 ACYLSSNPVKEETTDSEKHTYVLPDGSSLDIGHARFRAPEVLFRPDLIGEESEGIHDVLY 280
++ KE+ S+ P +S D + + P +P E G+ D++Y
Sbjct: 343 DKKVTPTEEKEQEAVSK---STSPAANSADTPNETGKRPLEEEKPPKENNELIGLADLVY 399
Query: 281 YAIQKSDLDLRKVLYQNIVLSGGSTLFKGFGDRLLAEIRKNAPKDLKIRISAPQ---ERL 337
+I SD+DLR L N+VL+GG++ G DRL+ E+ K P LK RI ER
Sbjct: 400 SSIMSSDVDLRATLAHNVVLTGGTSSIPGLSDRLMTELNKILPS-LKFRILTTGHTIERQ 458
Query: 338 YSTWIGGSILASLDTFKRMWVSKREFDEDGKRAIHRKTF 376
Y +W+GGSIL SL TF ++WV K+E++E G + F
Sbjct: 459 YQSWLGGSILTSLGTFHQLWVGKKEYEEVGVERLLNDRF 497
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.1 bits (98), Expect = 3e-04
Identities = 32/217 (14%), Positives = 65/217 (29%), Gaps = 48/217 (22%)
Query: 184 DIAGRDVTRYLKLLLRKEGVN--FRTTAEFEIVRTIKEKACYLSSNPVKEETTDSEKHTY 241
+ +DV K +L KE ++ + + V++ + + Y
Sbjct: 32 NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY 91
Query: 242 VLPDGSSLDIGHARFRAPEVLFRPDLIGEESEGIHDVLYYAIQ----------KSDLDLR 291
+ R P ++ D LY Q + L LR
Sbjct: 92 ----KFLMSPIKTEQRQPS------MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR 141
Query: 292 KVLYQ-----NIVLSGGSTLFKGFGDRLLAEIRKNAPKDLKIRISAPQERLYSTWIG--- 343
+ L + N+++ G G G +A + K++ + ++ W+
Sbjct: 142 QALLELRPAKNVLIDGV----LGSGKTWVA---LDVCLSYKVQCKMDFK-IF--WLNLKN 191
Query: 344 ----GSILASLDT----FKRMWVSKREFDEDGKRAIH 372
++L L W S+ + + K IH
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228
Score = 38.3 bits (88), Expect = 0.004
Identities = 44/300 (14%), Positives = 86/300 (28%), Gaps = 88/300 (29%)
Query: 69 LSIHYPMEHGII----TDWNDMERIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNRE-- 122
L+ + P II D W++ + D+L T E + L P R+
Sbjct: 323 LTTN-PRRLSIIAESIRDGLATWDNWKH-VNCDKLTTIIE-----SSLNVLEPAEYRKMF 375
Query: 123 KAAEIFFESFNVPALYVSMQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPHSIMR 182
+F S ++P +LSL V+ + + + +
Sbjct: 376 DRLSVFPPSAHIPT------ILLSLIWFDVIKSDVMV----------------VVNKLHK 413
Query: 183 NDIAGRDVTRY------LKLLLRKEGVNFRTTAEFEIVRTIKEKACYLSSNPVKEETTDS 236
+ + + L L+ + N IV + S + + D
Sbjct: 414 YSLVEKQPKESTISIPSIYLELKVKLEN-EYALHRSIVDHYNIPKTFDSDDLIPPY-LDQ 471
Query: 237 EKHTYVLPDGSSLDIGH--ARFRAPE--VLFRPDLIGEESEGIHDVLYYAIQKSDLDLR- 291
+++ IGH PE LFR +++ LD R
Sbjct: 472 YFYSH---------IGHHLKNIEHPERMTLFR-------------MVF-------LDFRF 502
Query: 292 ---KVLYQNIVLSGGSTLFKGFGDRLLAE--IRKNAP------KDLKIRISAPQERLYST 340
K+ + + + ++ + I N P + + +E L +
Sbjct: 503 LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICS 562
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.3 bits (78), Expect = 0.076
Identities = 52/324 (16%), Positives = 92/324 (28%), Gaps = 129/324 (39%)
Query: 78 GIITD-WNDMERIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNREKAAEIFFESFNV-- 134
G D + ++ ++Q Y + + + L+E R A ++F + N+
Sbjct: 164 GNTDDYFEELRDLYQ-TY-HVLVGDLIKFSAETLSELI----RTTLDAEKVFTQGLNILE 217
Query: 135 ---------PALY-----VSM------QAVLSLYAT-----GRTTGVVLDSGDGVT-HAV 168
Y +S Q L+ Y G T G + G T H+
Sbjct: 218 WLENPSNTPDKDYLLSIPISCPLIGVIQ--LAHYVVTAKLLGFTPGELRSYLKGATGHSQ 275
Query: 169 PIYEGFAMPHSIMRNDIAGRD--------VTRYLKLLLRKEGVNFRTTAEFEI-VRTIKE 219
+ A IA D V + + +L F I VR E
Sbjct: 276 GLVTAVA---------IAETDSWESFFVSVRKAITVL-------------FFIGVRC-YE 312
Query: 220 KACYLSSNPVKEETTDSEKHTYVLPD------GSSLD-----IGHARFRAPEVLFRPDLI 268
S P DS ++ +P + + + P
Sbjct: 313 AYPNTSLPP--SILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA-------- 362
Query: 269 GEESEGIHDVLYYAIQKSDLDLRKVLYQNIVLSGG-STLFKGFGDRLLAEIRKN-APKDL 326
+ + L +N+V+SG +L+ L +RK AP L
Sbjct: 363 ---GKQVEISLVNG------------AKNLVVSGPPQSLY-----GLNLTLRKAKAPSGL 402
Query: 327 ----------KIR-------ISAP 333
K++ +++P
Sbjct: 403 DQSRIPFSERKLKFSNRFLPVASP 426
Score = 28.5 bits (63), Expect = 4.3
Identities = 20/118 (16%), Positives = 42/118 (35%), Gaps = 24/118 (20%)
Query: 223 YLSSNPVKEETTDSEKHTYVLPDGSSLDIGHARFRAPEVLFRPDLIGEESEGIHDVLYYA 282
Y +S ++ ++ H S LDI + F GE+ + I + Y A
Sbjct: 1636 YKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFG----GEKGKRIRE-NYSA 1690
Query: 283 IQKSDLDLRKVLYQNIVLSGGSTLFKGFGDRLLAEIRKNAPKDLKIRISAPQERLYST 340
+ +++ IV G + ++ EI +++ + + L +T
Sbjct: 1691 M----------IFETIV--DGKLKTE----KIFKEINEHSTS---YTFRSEKGLLSAT 1729
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome;
HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T*
1e4f_T* 4a2b_A*
Length = 419
Score = 30.8 bits (70), Expect = 0.65
Identities = 28/221 (12%), Positives = 57/221 (25%), Gaps = 48/221 (21%)
Query: 134 VPALYVSMQAVLSLYATGRTTGVVL-DSGDGVTHAVPIYEGFAMPHSIMRNDIAGRDVTR 192
+L + + VL+ + GVV+ + G T + Y+ + + V +
Sbjct: 188 KSSLVSTAEGVLT--TPEKDRGVVVVNLGYNFTGLI-AYKNGVPIKISYVP-VGMKHVIK 243
Query: 193 YLKLLLRKEGVNFRTTAEFEIVRTIKEKACYLSSNPVKEETTDSEKHTYVLPDGSSLDIG 252
+ +L +E + N +KEE
Sbjct: 244 DVSAVLDTS----FEESE-----RLIITHGNAVYNDLKEEEIQ------YRGLDG----- 283
Query: 253 HARFRAPEVLFRPDLIG------EESEGIHDVLYYAIQKSDLDLRKVLYQN----IVLSG 302
+ L E I ++ + + + +VL+G
Sbjct: 284 ----NTIKTTTAKKLSVIIHARLRE---IMSKSKKFFREVEAKIVEEGEIGIPGGVVLTG 336
Query: 303 GSTLFKGFGDRLLAEIRKNAPKDLKIRISAPQERLYSTWIG 343
G + LA +P +R + I
Sbjct: 337 GGAKIPRINE--LATEVFKSP----VRTGCYANSDRPSIIN 371
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion;
HET: ATP; 2.20A {Thermus thermophilus}
Length = 377
Score = 28.7 bits (64), Expect = 3.1
Identities = 30/220 (13%), Positives = 60/220 (27%), Gaps = 34/220 (15%)
Query: 104 EEHPVLLTEAPLNPRRNREKAAE---IFFESFNVPALYVSMQAVLSLYATGRTTGVVL-D 159
E+ V++ A +A + +V + + + + A ++ D
Sbjct: 139 EQVQVMVAAARQEAVAGVLEALRGAGLVPVVLDVKP-FAGLYPLEARLAEEPDRVFLVLD 197
Query: 160 SGDGVTHAVPIYEGFAMPHSIMRNDIAGRDVTRYLKLLLRKEGVNFRTTAEFEIVRTIKE 219
G T V + G + ++G+D T + +F +
Sbjct: 198 IGAESTSLV-LLRGDKPLAVRVLT-LSGKDFTEAIA-------RSFNLDLL-AAEEVKRT 247
Query: 220 KACYLSSNPVKEETTDSEKHTYVLPDGSSLDIGHARFRAPEVLFRPDLIGEESEGIHDVL 279
+E D + G D +L E + L
Sbjct: 248 YGMATLPTEDEELLLDFDAERERYSPGRIYDAIRPVLV--------ELTQE----LRRSL 295
Query: 280 -YYAIQKSDLDLRKVLYQNIVLSGGSTLFKGFGDRLLAEI 318
++ IQ + L GG + +G LL +
Sbjct: 296 EFFRIQLEEASPEV-----GYLLGGGSKLRGL-ASLLTDT 329
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization
EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A
{Carboxydothermus hydrogenoformans z-29organism_taxid}
Length = 272
Score = 27.2 bits (61), Expect = 7.7
Identities = 4/20 (20%), Positives = 8/20 (40%), Gaps = 1/20 (5%)
Query: 298 IVLSGGSTLFKGFGDRLLAE 317
+ + GG+ GF +
Sbjct: 230 VYVVGGTAYLTGF-SEEFSR 248
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 516
Score = 27.5 bits (61), Expect = 7.7
Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 10/109 (9%)
Query: 255 RFRAP---EVLFRPDLIGEESEGIH---DVLYYAIQKSDLDLRKVLYQNIVLSGGSTLFK 308
+FR P + R I E +V+ IQ + D+R+V+ +LS ST K
Sbjct: 205 QFRRPDANSIKSRLMTIAIR-EKFKLDPNVIDRLIQTTRGDIRQVIN---LLSTISTTTK 260
Query: 309 GFGDRLLAEIRKNAPKDLKIRISAPQERLYSTWIGGSILASLDTFKRMW 357
+ EI K K++ ++ ++ I I + T
Sbjct: 261 TINHENINEISKAWEKNIALKPFDIAHKMLDGQIYSDIGSRNFTLNDKI 309
>1lt8_A Betaine-homocysteine methyltransferase; homocysteine metabolism,
homocysteinemia, zinc, thiol alkyl transfer; HET: CBH
CIT; 2.05A {Homo sapiens} SCOP: c.1.26.1 PDB: 1lt7_A*
1umy_A
Length = 406
Score = 27.5 bits (61), Expect = 8.3
Identities = 13/39 (33%), Positives = 15/39 (38%), Gaps = 5/39 (12%)
Query: 37 NYIG-----RPKHIRVMAGALEGDIFVGPKAEEHRGLLS 70
YIG P HIR +A L + P A E G
Sbjct: 294 RYIGGCCGFEPYHIRAIAEELAPERGFLPPASEKHGSWG 332
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.412
Gapped
Lambda K H
0.267 0.0704 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,032,222
Number of extensions: 379451
Number of successful extensions: 899
Number of sequences better than 10.0: 1
Number of HSP's gapped: 873
Number of HSP's successfully gapped: 18
Length of query: 376
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 281
Effective length of database: 4,049,298
Effective search space: 1137852738
Effective search space used: 1137852738
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.2 bits)