RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16631
(376 letters)
>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]}
Length = 225
Score = 263 bits (674), Expect = 3e-88
Identities = 126/225 (56%), Positives = 163/225 (72%), Gaps = 4/225 (1%)
Query: 152 RTTGVVLDSGDGVTHAVPIYEGFAMPHSIMRNDIAGRDVTRYLKLLLRKEGVNFRTTAEF 211
RTTG+VLDSGDGVTH VPIYEG+A+PH+IMR D+AGRD+T YL +L + G +F TTAE
Sbjct: 1 RTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAER 60
Query: 212 EIVRTIKEKACYLSSNPVKE----ETTDSEKHTYVLPDGSSLDIGHARFRAPEVLFRPDL 267
EIVR IKEK CY++ + E ++ S + +Y LPDG + IG+ RFR PE LF+P
Sbjct: 61 EIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSF 120
Query: 268 IGEESEGIHDVLYYAIQKSDLDLRKVLYQNIVLSGGSTLFKGFGDRLLAEIRKNAPKDLK 327
IG ES GIH+ Y +I K D+D+RK LY N V+SGG+T++ G DR+ EI AP +K
Sbjct: 121 IGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMK 180
Query: 328 IRISAPQERLYSTWIGGSILASLDTFKRMWVSKREFDEDGKRAIH 372
I+I AP ER YS WIGGSILASL TF++MW++K+E+DE G +H
Sbjct: 181 IKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVH 225
>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow
(Bos taurus) [TaxId: 9913]}
Length = 258
Score = 243 bits (621), Expect = 8e-80
Identities = 79/251 (31%), Positives = 129/251 (51%), Gaps = 28/251 (11%)
Query: 154 TGVVLDSGDGVTHAVPIYEGFAMPHSIMRNDIAGRDVTRYLKLLLRKEGVNFRTTAEFEI 213
TG V+DSGDGVTH +P+ EG+ + I IAGRD+T +++ LLR V E
Sbjct: 4 TGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLET 63
Query: 214 VRTIKEKACYLSSNPVKEETTDSEKHT----------YVLPDGSSLDIGHARFRAPEVLF 263
+ +KE+ Y+ + VKE + + S+D+G+ RF PE+ F
Sbjct: 64 AKAVKERYSYVCPDLVKEFNKYDTDGSKWIKQYTGINAISKKEFSIDVGYERFLGPEIFF 123
Query: 264 RPDLI-GEESEGIHDVLYYAIQKSDLDLRKVLYQNIVLSGGSTLFKGFGDRLLAEIR--- 319
P+ + ++ I +V+ IQ +D+R+ LY+NIVLSGGST+F+ FG RL +++
Sbjct: 124 HPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTV 183
Query: 320 -------------KNAPKDLKIRISAPQERLYSTWIGGSILASLDTFKRMWVSKREFDED 366
+ PK + +++ + Y+ W GGS+LAS F ++ +K++++E
Sbjct: 184 DARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYQVCHTKKDYEEI 243
Query: 367 GKRAI-HRKTF 376
G H F
Sbjct: 244 GPSICRHNPVF 254
>d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]}
Length = 140
Score = 191 bits (485), Expect = 4e-61
Identities = 82/140 (58%), Positives = 111/140 (79%), Gaps = 1/140 (0%)
Query: 12 VVIDNGSGVIKAGFAGDQVPKCCFPNYIGRPKHIRVMAGALEGDIFVGPKAEEHRGLLSI 71
+V DNGSG++KAGFAGD P+ FP+ +GRP+H VM G + D +VG +A+ RG+L++
Sbjct: 2 LVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 61
Query: 72 HYPMEHGIITDWNDMERIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNREKAAEIFFES 131
YP+EHGIIT+W+DME+IW + + N+ L+ EEHP LLTEAPLNP+ NREK +I FE+
Sbjct: 62 KYPIEHGIITNWDDMEKIWHHTFYNE-LRVAPEEHPTLLTEAPLNPKANREKMTQIMFET 120
Query: 132 FNVPALYVSMQAVLSLYATG 151
FNVPA+YV++QAVLSLYA+G
Sbjct: 121 FNVPAMYVAIQAVLSLYASG 140
>d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 158
Score = 190 bits (483), Expect = 2e-60
Identities = 62/154 (40%), Positives = 86/154 (55%), Gaps = 10/154 (6%)
Query: 11 PVVIDNGSGVIKAGFAGDQVPKCCFPNYIG--------RPKHIRVMAGALEGDIFVGPKA 62
V+D G+G K G+AG+ P+ P+ I RVM G + D F+G +A
Sbjct: 5 ACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGDEA 64
Query: 63 EEHRGLLSIHYPMEHGIITDWNDMERIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNRE 122
E + + +P+ HGI+ DW+ MER + V L+ E+H LLTE PLN NRE
Sbjct: 65 IE-KPTYATKWPIRHGIVEDWDLMERFMEQVIFK-YLRAEPEDHYFLLTEPPLNTPENRE 122
Query: 123 KAAEIFFESFNVPALYVSMQAVLSLYATGRTTGV 156
AEI FESFNVP LY+++QAVL+L A+ + V
Sbjct: 123 YTAEIMFESFNVPGLYIAVQAVLALAASWTSRQV 156
>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow
(Bos taurus) [TaxId: 9913]}
Length = 190
Score = 191 bits (485), Expect = 2e-60
Identities = 84/177 (47%), Positives = 112/177 (63%), Gaps = 4/177 (2%)
Query: 155 GVVLDSGDGVTHAVPIYEGFAMPHSIMRNDIAGRDVTRYLKLLLRKEGVNFRTTAEFEIV 214
GVV+DSGDGVTH P+YEGF++PH R DIAGRD+TRYL LL G F +A+FE V
Sbjct: 1 GVVVDSGDGVTHICPVYEGFSLPHLTRRLDIAGRDITRYLIKLLLLRGYAFNHSADFETV 60
Query: 215 RTIKEKACYLSSNPVKEETTDSEKHTYV----LPDGSSLDIGHARFRAPEVLFRPDLIGE 270
R IKEK CY+ N +E+ E V LPDG + +G RF APE LF+P LI
Sbjct: 61 RMIKEKLCYVGYNIEQEQKLALETTVLVESYTLPDGRIIKVGGERFEAPEALFQPHLINV 120
Query: 271 ESEGIHDVLYYAIQKSDLDLRKVLYQNIVLSGGSTLFKGFGDRLLAEIRKNAPKDLK 327
E G+ ++L+ IQ +D+D R Y++IVLSGGST++ G RL E+++ + +
Sbjct: 121 EGVGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYPGLPSRLERELKQLYLERVL 177
>d1ewka_ c.93.1.1 (A:) Metabotropic glutamate receptor subtype 1
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 477
Score = 26.5 bits (57), Expect = 6.4
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 7/43 (16%)
Query: 52 LEGDIFVGPKAEEHRGLLSIHYPMEHGIITDWNDMERIWQYVY 94
++GD+ +G L S+H+ + + E QY
Sbjct: 6 MDGDVIIG-------ALFSVHHQPPAEKVPERKCGEIREQYGI 41
>d1tywa_ b.80.1.6 (A:) P22 tailspike protein {Salmonella phage P22
[TaxId: 10754]}
Length = 554
Score = 26.5 bits (58), Expect = 6.5
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 243 LPDGSSLDIGHARFRAPEVLFRPDLIGEE 271
PD SL + H R E+ F PD+ ++
Sbjct: 488 TPDAVSLKVNHKDCRGAEIPFVPDIASDD 516
>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase
fragment {Cow (Bos taurus) [TaxId: 9913]}
Length = 193
Score = 25.7 bits (56), Expect = 7.3
Identities = 33/165 (20%), Positives = 51/165 (30%), Gaps = 17/165 (10%)
Query: 151 GRTTGV-VLDSGDGVTHAVPIYEGFAMPHSIMRNDIAGRDVTRYLKLLLRKEGVNFRTTA 209
G T V +L DG+ A + D R V ++ RK +
Sbjct: 14 GGTFDVSILTIEDGIFEVKST----AGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENK 69
Query: 210 EFEIVRTIKEKACYLSSNPVKEETTDSEKHTYVLPDGSSLDIGHARFRAPEVLFRPDLIG 269
VR ++ E + I ARF +L
Sbjct: 70 R--AVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFE--------ELNA 119
Query: 270 EESEGIHDVLYYAIQKSDLDLRKVLYQNIVLSGGSTLFKGFGDRL 314
+ G D + A++ + LD ++ +IVL GGST L
Sbjct: 120 DLFRGTLDPVEKALRDAKLDKSQI--HDIVLVGGSTRIPKIQKLL 162
>d2bvca1 d.15.9.1 (A:5-104) Glutamine synthetase, N-terminal
domain {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 100
Score = 24.5 bits (53), Expect = 9.2
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 33 CCFPNYIGRPKHIRVMAGALEGDIF 57
F + G +H + A A + +F
Sbjct: 19 VRFCDLPGIMQHFTIPASAFDKSVF 43
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.138 0.412
Gapped
Lambda K H
0.267 0.0593 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,459,920
Number of extensions: 71093
Number of successful extensions: 174
Number of sequences better than 10.0: 1
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 11
Length of query: 376
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 289
Effective length of database: 1,213,086
Effective search space: 350581854
Effective search space used: 350581854
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.9 bits)