BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16632
(203 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YUE|A Chain A, Solution Structure Of The Neuz (Nhr) Domain In Neuralized
From Drosophila Melanogaster
Length = 168
Score = 213 bits (541), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 95/185 (51%), Positives = 127/185 (68%), Gaps = 26/185 (14%)
Query: 14 PLYFHQVHGENVRVSRDGTVAKRYESFCKGVAFSSRPVKINEKVYVKLLEISTNWSGVIR 73
PL FH VHG+N+R+SRDGT+A+R+ESFC+ + FS+RPV+INE++ VK EIS NW+G IR
Sbjct: 8 PLQFHSVHGDNIRISRDGTLARRFESFCRAITFSARPVRINERICVKFAEISNNWNGGIR 67
Query: 74 FGFTANDPAHLKYALPRYVCPDLTNKPGYWAKALAERFADQETVLFYYVIVQPGYWAKAL 133
FGFT+NDP L+ LP+Y CPDLTN+PG+WAKAL E++ +++
Sbjct: 68 FGFTSNDPVTLEGTLPKYACPDLTNRPGFWAKALHEQYCEKD------------------ 109
Query: 134 AERFADQETVLFYYVTAAGDVHFGINGEEKGVFFTGVETRGPLWAMFDIYGNSTAIQLID 193
+L+YYV AGDV +GIN EEKGV TG++TR LW + DIYGN T I+ +D
Sbjct: 110 --------NILYYYVNGAGDVIYGINNEEKGVILTGIDTRSLLWTVIDIYGNCTGIEFLD 161
Query: 194 SRAQL 198
SR +
Sbjct: 162 SRIYM 166
>pdb|2E63|A Chain A, Solution Structure Of The Neuz Domain In Kiaa1787 Protein
Length = 170
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 76/183 (41%), Gaps = 28/183 (15%)
Query: 17 FHQVHGENVRVSRDGTVAKRYE---SFCKGVAFSSRPVKINEKVYVKLLEISTNWSGVIR 73
H G V +S G A+R + F G+ S P++ V++ +WSG I
Sbjct: 9 LHPRTGRLVSLSACGRTARRQQPGQEFNHGLVLSREPLRDGRVFTVRIDRKVNSWSGSIE 68
Query: 74 FGFTANDPAHLKYALPRYVCPDLTN--KPGYWAKALAERFADQETVLFYYV--IVQPGYW 129
G TA DP+ L + P K G W + D +VL Y + Q G
Sbjct: 69 IGVTALDPSVLDF-------PSSATGLKGGSWVVSGCSVLRDGRSVLEEYGQDLDQLGEG 121
Query: 130 AKALAERFADQETVLFYYVTAAGDVHFGINGEEKGVFFTGVETRGPLWAMFDIYGNSTAI 189
+ ER T AG++ +NG + GV TG+ R +WA+ D+YG T I
Sbjct: 122 DRVGVER------------TVAGELRLWVNGRDCGVAATGLPPR--VWAVVDLYGKCTQI 167
Query: 190 QLI 192
++
Sbjct: 168 TVL 170
>pdb|3F2Z|A Chain A, Crystal Structure Of The C-Terminal Domain Of A Chitobiase
(Bf3579) From Bacteroides Fragilis, Northeast Structural
Genomics Consortium Target Bfr260b
Length = 159
Score = 30.8 bits (68), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 9/55 (16%)
Query: 47 SSRPVKINEKVYVKLLEISTNWSGVIRFGFTANDPA---HLKYALPRY---VCPD 95
S+ P+K+ V + E TNW + +FGFT D A ++K + RY V PD
Sbjct: 79 SNNPIKV---VRFEASEDGTNWESIGQFGFTNQDAALKYYVKSSTARYIKLVIPD 130
>pdb|1JK9|B Chain B, Heterodimer Between H48f-Ysod1 And Yccs
pdb|1JK9|D Chain D, Heterodimer Between H48f-Ysod1 And Yccs
Length = 249
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 35/88 (39%), Gaps = 13/88 (14%)
Query: 99 KPGYWAKALAERFADQETVLFYYVIVQPGYWAKALAERFADQETVLFYYVTA-----AGD 153
KP A A+ E F Y + + + LA E + +T AG+
Sbjct: 75 KPNSSAVAILETFQK------YTIDQKKDTAVRGLARIVQVGENKTLFDITVNGVPEAGN 128
Query: 154 VHFGINGEEKGVFFTGVETRGPLWAMFD 181
H I+ EKG GVE+ G +W FD
Sbjct: 129 YHASIH--EKGDVSKGVESTGKVWHKFD 154
>pdb|2J6R|A Chain A, Faeg From F4ac Etec Strain Gis26, Produced In Tobacco
Plant Chloroplast
Length = 266
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 11/87 (12%)
Query: 1 PRTGSNSGTNNLPPLYFHQVHGENVRV-SRDGTVAKRYESFCKGVAFSSRPVKINEKVYV 59
P TG G + +P + F G +V + + DG E+ KG+A+ P+K E V
Sbjct: 76 PVTG---GVDGIPHIAFTDYEGASVVLRNNDG------ETNKKGLAYFVLPMKNAEGTKV 126
Query: 60 KLLEISTNWSGVI-RFGFTANDPAHLK 85
++++ +++GV+ R G T+ D L
Sbjct: 127 GSVKVNASYAGVLGRGGVTSADGELLS 153
>pdb|1QUP|A Chain A, Crystal Structure Of The Copper Chaperone For Superoxide
Dismutase
pdb|1QUP|B Chain B, Crystal Structure Of The Copper Chaperone For Superoxide
Dismutase
Length = 222
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 35/88 (39%), Gaps = 13/88 (14%)
Query: 99 KPGYWAKALAERFADQETVLFYYVIVQPGYWAKALAERFADQETVLFYYVTA-----AGD 153
KP A A+ E F Y + + + LA E + +T AG+
Sbjct: 74 KPNSSAVAILETFQK------YTIDQKKDTAVRGLARIVQVGENKTLFDITVNGVPEAGN 127
Query: 154 VHFGINGEEKGVFFTGVETRGPLWAMFD 181
H I+ EKG GVE+ G +W FD
Sbjct: 128 YHASIH--EKGDVSKGVESTGKVWHKFD 153
>pdb|3GGL|A Chain A, X-Ray Structure Of The C-Terminal Domain (277-440) Of
Putative Chitobiase From Bacteroides Thetaiotaomicron.
Northeast Structural Genomics Consortium Target Btr324a
Length = 169
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 47 SSRPVKINEKVYVKLLEISTNWSGVIRFGFTANDPA---HLKYALPRYV 92
S+ P+K+ V E + NW+ + RFGFT D A ++K RY+
Sbjct: 89 SNNPIKV---VEFAASEDNVNWTPIGRFGFTNQDAALEYYVKSIKARYI 134
>pdb|2KD7|A Chain A, Solution Nmr Structure Of F58 TYPE C-Terminal Domain Of A
Putative Chitobiase From Bacteroides Thetaiotaomicron.
Northeast Structural Genomics Consortium Target Btr324b
Length = 159
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 47 SSRPVKINEKVYVKLLEISTNWSGVIRFGFTANDPA---HLKYALPRYV 92
S+ P+K+ V E + NW+ + RFGFT D A ++K RY+
Sbjct: 79 SNNPIKV---VEFAASEDNVNWTPIGRFGFTNQDAALEYYVKSIKARYI 124
>pdb|2C9I|A Chain A, Structure Of The Fluorescent Protein Asfp499 From Anemonia
Sulcata
pdb|2C9I|B Chain B, Structure Of The Fluorescent Protein Asfp499 From Anemonia
Sulcata
pdb|2C9I|C Chain C, Structure Of The Fluorescent Protein Asfp499 From Anemonia
Sulcata
pdb|2C9I|D Chain D, Structure Of The Fluorescent Protein Asfp499 From Anemonia
Sulcata
pdb|2C9I|E Chain E, Structure Of The Fluorescent Protein Asfp499 From Anemonia
Sulcata
pdb|2C9I|F Chain F, Structure Of The Fluorescent Protein Asfp499 From Anemonia
Sulcata
pdb|2C9I|G Chain G, Structure Of The Fluorescent Protein Asfp499 From Anemonia
Sulcata
pdb|2C9I|H Chain H, Structure Of The Fluorescent Protein Asfp499 From Anemonia
Sulcata
Length = 226
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 11 NLPPLYFHQVHGENVRVSRDGTVAKRYESFCKGVAFSSRPVKI 53
LP L+FH + E + +S D +++ES ++S P K+
Sbjct: 183 KLPELHFHHLRMEKLNISDDWKTVEQHESVV--ASYSQVPSKL 223
>pdb|1EJ8|A Chain A, Crystal Structure Of Domain 2 Of The Yeast Copper
Chaperone For Superoxide Dismutase (Lys7) At 1.55 A
Resolution
Length = 140
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 148 VTAAGDVHFGINGEEKGVFFTGVETRGPLWAMFD 181
V AG+ H I+ EKG GVE+ G +W FD
Sbjct: 46 VPEAGNYHASIH--EKGDVSKGVESTGKVWHKFD 77
>pdb|1AVB|A Chain A, Arcelin-1 From Phaseolus Vulgaris L
pdb|1AVB|B Chain B, Arcelin-1 From Phaseolus Vulgaris L
Length = 226
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 32 TVAKRYESFCKGVAFSSRPVKINEKVYVKLLEISTNWSGVIRFGFTANDPAHLKYAL 88
T K E G AF S P++IN++ L STN++ I N L +AL
Sbjct: 33 TNVKGNEEDSMGRAFYSAPIQINDRTIDNLASFSTNFTFRINAKNIENSAYGLAFAL 89
>pdb|2J6R|B Chain B, Faeg From F4ac Etec Strain Gis26, Produced In Tobacco
Plant Chloroplast
Length = 266
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 1 PRTGSNSGTNNLPPLYFHQVHGENVRVSR-DGTVAKRYESFCKGVAFSSRPVKINEKVYV 59
P TG G + +P + F G +V + DG E+ KG+A+ P+K E V
Sbjct: 76 PVTG---GVDGIPHIAFTDYEGASVVLRNPDG------ETNKKGLAYFVLPMKNAEGTKV 126
Query: 60 KLLEISTNWSGVI-RFGFTANDPAHLK 85
++++ +++GV+ R G T+ D L
Sbjct: 127 GSVKVNASYAGVLGRGGVTSADGELLS 153
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,430,149
Number of Sequences: 62578
Number of extensions: 261407
Number of successful extensions: 455
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 449
Number of HSP's gapped (non-prelim): 16
length of query: 203
length of database: 14,973,337
effective HSP length: 94
effective length of query: 109
effective length of database: 9,091,005
effective search space: 990919545
effective search space used: 990919545
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)