Query psy16632
Match_columns 203
No_of_seqs 115 out of 279
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 17:51:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16632.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16632hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00588 NEUZ domain in neur 100.0 7.8E-39 1.7E-43 247.4 13.6 121 13-159 1-123 (123)
2 KOG4625|consensus 100.0 1.9E-36 4.1E-41 277.6 10.2 174 4-194 91-264 (595)
3 KOG4625|consensus 100.0 2.5E-30 5.5E-35 237.4 9.5 155 12-193 291-447 (595)
4 PF07177 Neuralized: Neuralize 100.0 1.6E-29 3.4E-34 176.9 7.2 68 14-81 1-69 (69)
5 PF00622 SPRY: SPRY domain; I 97.9 0.00035 7.6E-09 52.1 12.1 108 56-191 5-118 (124)
6 smart00449 SPRY Domain in SPla 97.8 0.00079 1.7E-08 50.4 12.9 105 56-186 5-113 (122)
7 KOG4030|consensus 96.6 0.081 1.8E-06 42.7 12.5 141 10-183 24-167 (197)
8 KOG2626|consensus 94.8 0.19 4.2E-06 47.4 9.0 54 21-78 300-354 (544)
9 KOG3953|consensus 94.7 0.097 2.1E-06 44.7 6.4 53 138-192 141-195 (242)
10 PF01835 A2M_N: MG2 domain; I 83.2 3.8 8.3E-05 29.4 5.5 40 43-83 2-47 (99)
11 PF10179 DUF2369: Uncharacteri 75.0 18 0.0004 32.1 8.1 80 12-91 95-177 (300)
12 PF10989 DUF2808: Protein of u 58.0 58 0.0013 25.4 7.1 41 44-84 92-133 (146)
13 TIGR03079 CH4_NH3mon_ox_B meth 53.3 18 0.00039 33.1 3.8 57 12-68 295-357 (399)
14 COG3269 Predicted RNA-binding 51.8 42 0.00091 23.7 4.7 38 47-84 9-47 (73)
15 PF07610 DUF1573: Protein of u 40.5 24 0.00052 22.0 1.9 20 43-62 25-44 (45)
16 COG4918 Uncharacterized protei 35.4 41 0.00089 25.3 2.7 40 148-190 19-58 (114)
17 TIGR00541 hisDCase_pyru histid 33.9 30 0.00066 30.4 2.1 39 13-59 139-177 (310)
18 COG3086 RseC Positive regulato 33.5 31 0.00067 27.6 1.9 26 44-69 52-77 (150)
19 PF04334 DUF478: Protein of un 30.8 48 0.001 22.3 2.2 18 175-192 13-30 (68)
20 KOG0349|consensus 29.3 63 0.0014 30.8 3.5 38 139-177 186-227 (725)
21 PF02933 CDC48_2: Cell divisio 29.1 49 0.0011 21.9 2.1 32 46-83 14-45 (64)
22 PF01052 SpoA: Surface present 26.7 77 0.0017 21.5 2.9 27 139-165 30-56 (77)
23 KOG4367|consensus 25.7 3.1E+02 0.0068 26.1 7.3 41 139-182 639-682 (699)
24 cd05684 S1_DHX8_helicase S1_DH 24.4 1.8E+02 0.0039 19.6 4.4 30 51-83 49-78 (79)
25 TIGR02480 fliN flagellar motor 22.2 1.2E+02 0.0025 21.0 3.1 29 138-166 29-57 (77)
26 COG3837 Uncharacterized conser 21.7 1.6E+02 0.0034 23.9 4.1 32 139-171 87-118 (161)
27 PF02329 HDC: Histidine carbox 21.3 97 0.0021 27.4 3.0 32 13-54 146-177 (306)
28 PF13889 Chromosome_seg: Chrom 21.2 1.5E+02 0.0032 19.8 3.2 21 43-63 26-47 (56)
29 COG3533 Uncharacterized protei 21.1 3.3E+02 0.0072 26.4 6.6 34 57-91 401-436 (589)
30 COG2373 Large extracellular al 20.8 1.9E+02 0.0042 31.7 5.6 59 12-70 364-424 (1621)
31 KOG3287|consensus 20.8 1.3E+02 0.0028 25.7 3.6 34 49-84 50-83 (236)
32 PF13464 DUF4115: Domain of un 20.0 2E+02 0.0043 19.6 3.9 26 141-166 37-62 (77)
No 1
>smart00588 NEUZ domain in neuralized proteins.
Probab=100.00 E-value=7.8e-39 Score=247.43 Aligned_cols=121 Identities=48% Similarity=0.829 Sum_probs=114.3
Q ss_pred CCcccccCCCCCEEEecCCeEEEecCc-CCceEEEeCCcCCCCCEEEEEEEeecCCccceeEEeeeeeCCCCCCC-CCCC
Q psy16632 13 PPLYFHQVHGENVRVSRDGTVAKRYES-FCKGVAFSSRPVKINEKVYVKLLEISTNWSGVIRFGFTANDPAHLKY-ALPR 90 (203)
Q Consensus 13 ~~l~FH~~~G~nI~Ls~~~~~A~R~~s-f~~giVFS~rPL~~gE~f~v~I~~~~~~wsG~l~iGvT~~dP~~l~~-~lP~ 90 (203)
.+|+||+.||+||+|++++++|+|..+ |++|||||+|||++||+|+|+|++.+.+|+|+|++|||+|||+.+++ +||.
T Consensus 1 ~~l~FH~~~G~ni~l~~~~~~A~R~~~~f~~givFS~rPl~~~E~~~v~i~~~~~~w~G~l~~G~Ts~dP~~l~~~~lp~ 80 (123)
T smart00588 1 GPLRFHHRHGSNIRLSDSGRVARRSASDFCNALVFSARPLRINELFEVKIEKVVRKWSGALRFGVTTCDPATLRPASLPT 80 (123)
T ss_pred CCcccccccCCCeEECCCCcEEEcccCCcCceEEecCCCCcCCCEEEEEEEEecCCccCceEEEEecCCcccccCccCcc
Confidence 379999999999999999999999876 99999999999999999999999999999999999999999999987 8998
Q ss_pred CCCCCCCCCCCeeEEeccccccccceeeeeeeeccCCchhhhhhccccCCccEEEEEECCCceEEEEEc
Q psy16632 91 YVCPDLTNKPGYWAKALAERFADQETVLFYYVIVQPGYWAKALAERFADQETVLFYYVTAAGDVHFGIN 159 (203)
Q Consensus 91 ~a~~dL~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~l~~~~~~~G~l~~~vN 159 (203)
+++|||.++++||+++..+.++ ..|+++.|+++.+|++++.||
T Consensus 81 ~~~~dl~~~~g~wv~~~~~~~~--------------------------~~g~~l~f~~~~~G~v~~~vn 123 (123)
T smart00588 81 NACPDLVDMSGFWAKALGEGLA--------------------------EQGGILGLDVLAEGEVVGVIN 123 (123)
T ss_pred cCcccccccCCcceEECChhhc--------------------------cCCCEEEEEECCCceEEEEeC
Confidence 9899999999999998766544 889999999999999999997
No 2
>KOG4625|consensus
Probab=100.00 E-value=1.9e-36 Score=277.62 Aligned_cols=174 Identities=31% Similarity=0.609 Sum_probs=148.6
Q ss_pred CCCCCCCCCCCcccccCCCCCEEEecCCeEEEecCcCCceEEEeCCcCCCCCEEEEEEEeecCCccceeEEeeeeeCCCC
Q psy16632 4 GSNSGTNNLPPLYFHQVHGENVRVSRDGTVAKRYESFCKGVAFSSRPVKINEKVYVKLLEISTNWSGVIRFGFTANDPAH 83 (203)
Q Consensus 4 ~~~~~~~~~~~l~FH~~~G~nI~Ls~~~~~A~R~~sf~~giVFS~rPL~~gE~f~v~I~~~~~~wsG~l~iGvT~~dP~~ 83 (203)
+++.......+++||.+||+||+|++++++|+|.++||+||+||+|||++||.|+|||+|++..|||+||+|||..||+.
T Consensus 91 ~n~~~p~~~~pl~fH~iHGsNi~I~~~g~~A~RraSF~dAItFSnRPl~~~E~f~v~ieki~~~WSG~irlGvT~~dPe~ 170 (595)
T KOG4625|consen 91 SNQVTPLSRFPLQFHSIHGSNIRIDNSGTLAKRRASFCDAITFSNRPLRIGELFLVEIEKIERGWSGHLRLGVTSLDPED 170 (595)
T ss_pred cCCcCcCCCCCceeecccCcceEECCCcceeehhhhhcceeeeccCcCCCCcEEEEEEEEeccCccceeEeecccCCHhh
Confidence 34445568889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCeeEEeccccccccceeeeeeeeccCCchhhhhhccccCCccEEEEEECCCceEEEEEcCcce
Q psy16632 84 LKYALPRYVCPDLTNKPGYWAKALAERFADQETVLFYYVIVQPGYWAKALAERFADQETVLFYYVTAAGDVHFGINGEEK 163 (203)
Q Consensus 84 l~~~lP~~a~~dL~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~l~~~~~~~G~l~~~vNG~~~ 163 (203)
+++..+.+|||||++.++||++++++.++|.-.+.-.| +...|+ ++++++.+|.+||++++.++
T Consensus 171 i~~~~~tfa~PDL~nl~G~Wa~al~e~~~n~~~i~~~~---------------v~~~g~-v~~~in~~~~~~fftgi~~~ 234 (595)
T KOG4625|consen 171 IRPSPETFACPDLVNLSGFWAKALPETYRNEGNILAFA---------------VNPKGR-VFYGINGSGKMHFFTGIRTQ 234 (595)
T ss_pred ccCCCccccCcchhccCchhhhhcchhhcccccchhhh---------------hcCCCc-ceeeecCcceEEEeeccccc
Confidence 98722368999999999999999999887543332222 224444 57889999999999999999
Q ss_pred eeEeeccCCCCceEEEEeccCCceEEEEecC
Q psy16632 164 GVFFTGVETRGPLWAMFDIYGNSTAIQLIDS 194 (203)
Q Consensus 164 G~~~~~v~~~~pLwavvDvyG~t~~V~lv~~ 194 (203)
|.++++-+.. ..|+.+|+|+.+.++++.+.
T Consensus 235 ~~a~~~~s~~-~~r~~~~l~~~~~~~sl~~a 264 (595)
T KOG4625|consen 235 GHACSRPSLA-QARHPVDLLVQCVPVSLHDA 264 (595)
T ss_pred chhhccCCch-heeehhhhhccccchhhhhc
Confidence 9888765432 69999999999999988654
No 3
>KOG4625|consensus
Probab=99.96 E-value=2.5e-30 Score=237.40 Aligned_cols=155 Identities=33% Similarity=0.655 Sum_probs=140.3
Q ss_pred CCCcccccCCCCCEEEecCCeEEEecC-cCCceEEEeCCcCCCCCEEEEEEEeecCCccceeEEeeeeeCCCCCCC-CCC
Q psy16632 12 LPPLYFHQVHGENVRVSRDGTVAKRYE-SFCKGVAFSSRPVKINEKVYVKLLEISTNWSGVIRFGFTANDPAHLKY-ALP 89 (203)
Q Consensus 12 ~~~l~FH~~~G~nI~Ls~~~~~A~R~~-sf~~giVFS~rPL~~gE~f~v~I~~~~~~wsG~l~iGvT~~dP~~l~~-~lP 89 (203)
..+++||.++|.||+|++++++|.|.. .|++++||++|||+.+|+|+|+|+++...|.|+|.||+|+|||+++++ .||
T Consensus 291 ~~~~rfH~~~G~nv~l~~d~tvA~r~~~~~s~glVFterPlr~~e~~~Ikv~~v~~l~~G~L~lGvT~~dpg~l~p~~Lp 370 (595)
T KOG4625|consen 291 DGPLRFHATKGANVRLSDDGTVARREHGAYSQGLVFTERPLRVGEKLEIKVTRVGRLYAGALSLGVTTCDPGTLRPADLP 370 (595)
T ss_pred CCccceeeeccccccccCCCcccccccccccceEEEEecccccCCEEEEEeeecchhhcchhhccceecCccccccCCCC
Confidence 558999999999999999999999975 499999999999999999999999999999999999999999999998 899
Q ss_pred CCCCCCCCCCCCeeEEeccccccccceeeeeeeeccCCchhhhhhccccCCccEEEEEECCCceEEEEEcCcceeeEeec
Q psy16632 90 RYVCPDLTNKPGYWAKALAERFADQETVLFYYVIVQPGYWAKALAERFADQETVLFYYVTAAGDVHFGINGEEKGVFFTG 169 (203)
Q Consensus 90 ~~a~~dL~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~l~~~~~~~G~l~~~vNG~~~G~~~~~ 169 (203)
.+ ...|.++++||+.. |.... .+..||++.|+++..|||++.+||...|+.+ +
T Consensus 371 ~s-p~~l~~rpe~w~~s-~~ia~------------------------~~~~~~~~~~~v~~~Gel~~~~~g~~a~~~l-~ 423 (595)
T KOG4625|consen 371 FS-PEALVDRPEYWVVS-CDIAG------------------------PPHVGDILQLVVNAYGELELSHNGAAAGVQL-C 423 (595)
T ss_pred CC-hhhhccchhhhhhe-eeccc------------------------CcccCceeeEEEcCCCcEEEeecCCceEEEE-E
Confidence 77 47899999999864 33222 2388999999999999999999999999998 5
Q ss_pred cCCCCceEEEEeccCCceEEEEec
Q psy16632 170 VETRGPLWAMFDIYGNSTAIQLID 193 (203)
Q Consensus 170 v~~~~pLwavvDvyG~t~~V~lv~ 193 (203)
+|.+.+||+.+|+||.+.++++.+
T Consensus 424 vD~sl~l~~~~~~~g~~as~~~~~ 447 (595)
T KOG4625|consen 424 VDASLPLWMLFDVYGTIASIRILG 447 (595)
T ss_pred ecCceeeeeeccccchhhhhhhcc
Confidence 999999999999999888777765
No 4
>PF07177 Neuralized: Neuralized; InterPro: IPR006573 NEUZ is a domain of unknown function found in neuralized proteins, i.e. proteins involved in the specification of the neuroblast during cellular differentiation. ; PDB: 2YUE_A 2E63_A.
Probab=99.96 E-value=1.6e-29 Score=176.95 Aligned_cols=68 Identities=56% Similarity=0.984 Sum_probs=53.0
Q ss_pred Cccccc-CCCCCEEEecCCeEEEecCcCCceEEEeCCcCCCCCEEEEEEEeecCCccceeEEeeeeeCC
Q psy16632 14 PLYFHQ-VHGENVRVSRDGTVAKRYESFCKGVAFSSRPVKINEKVYVKLLEISTNWSGVIRFGFTANDP 81 (203)
Q Consensus 14 ~l~FH~-~~G~nI~Ls~~~~~A~R~~sf~~giVFS~rPL~~gE~f~v~I~~~~~~wsG~l~iGvT~~dP 81 (203)
||+||+ +||+||+|++|+++|+|.++|++|||||+|||+++|+|+|+|++.+..|+|+|+||||++||
T Consensus 1 pl~FH~~~~G~nV~L~~~~~~A~R~~sf~~giVFS~rPl~~~E~~~v~I~~~~~~wsG~L~~GvT~~~P 69 (69)
T PF07177_consen 1 PLRFHPNVHGKNVRLSNDGTVARRVSSFNNGIVFSSRPLRIGEKFEVRIDEVEPSWSGSLRIGVTSCDP 69 (69)
T ss_dssp S--EEC-EE-TTEEE-SSS-EEEEST-SSS-EEEESS-B-TT-EEEEEEEEE-SSSSS--EEEEESS-C
T ss_pred CccccCcccCCCEEEcCCCeEEEecccCCceEEEecCCccCCCEEEEEEEecCCCceeEEEEeeEccCC
Confidence 689998 89999999999999999999999999999999999999999999999999999999999998
No 5
>PF00622 SPRY: SPRY domain; InterPro: IPR003877 The SPRY domain is of unknown function. Distant homologues are domains in butyrophilin/marenostrin/pyrin []. Ca2+-release from the sarcoplasmic or endoplasmic reticulum, the intracellular Ca2+ store, is mediated by the ryanodine receptor (RyR) and/or the inositol trisphosphate receptor (IP3R).; GO: 0005515 protein binding; PDB: 2V24_A 3EK9_A 2AFJ_A 2IWG_E 3EMW_A 2WL1_A 3TOJ_B 2VOK_A 2VOL_B 2FNJ_A ....
Probab=97.91 E-value=0.00035 Score=52.15 Aligned_cols=108 Identities=18% Similarity=0.259 Sum_probs=69.5
Q ss_pred EEEEEEEeecCCccceeEEeeeeeCCCCCCC-CCCCCCCCCCCCCCCeeEEeccc--cccccceeeeeeeeccCCchhhh
Q psy16632 56 KVYVKLLEISTNWSGVIRFGFTANDPAHLKY-ALPRYVCPDLTNKPGYWAKALAE--RFADQETVLFYYVIVQPGYWAKA 132 (203)
Q Consensus 56 ~f~v~I~~~~~~wsG~l~iGvT~~dP~~l~~-~lP~~a~~dL~~~~~~W~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 132 (203)
.|||+|.+... +.||+++.+-..-.. .+ +......|.+.... .+.++.. ..
T Consensus 5 YwEV~v~~~~~-----~~iGv~~~~~~~~~~~~~-------~g~~~~s~~~~~~~~~~~~~~~~--------------~~ 58 (124)
T PF00622_consen 5 YWEVEVDSGGS-----ISIGVATSSASVSGDENL-------SGYDPFSWGFHGDGGKKYHGGTS--------------EE 58 (124)
T ss_dssp EEEEEETGGCT-----EEEEEEETTSEESSSTS--------TTSSTTEEEEETTTTTEEESTSS--------------SE
T ss_pred EEEEEEecCcC-----EEEEEeECccccCCcccc-------CCccccceeeeccccccceeecc--------------cc
Confidence 47888876444 999998876511100 11 11123678875433 1111110 00
Q ss_pred hhccccCC-ccEEEEEEC-CCceEEEEEcCccee-eEeeccCCCCceEEEEeccCCceEEEE
Q psy16632 133 LAERFADQ-ETVLFYYVT-AAGDVHFGINGEEKG-VFFTGVETRGPLWAMFDIYGNSTAIQL 191 (203)
Q Consensus 133 ~~~~~~~~-gd~l~~~~~-~~G~l~~~vNG~~~G-~~~~~v~~~~pLwavvDvyG~t~~V~l 191 (203)
..... .. +|+|++.++ ..|+|.|++||+..+ ..+++++.+.+||.+|-+++ ..+|++
T Consensus 59 ~~~~~-~~~~dvIG~~lD~~~g~l~F~~ng~~~~~~~f~~~~~~~~l~P~v~~~~-~~~~~~ 118 (124)
T PF00622_consen 59 TGSPF-QEPGDVIGCGLDLDNGELSFYKNGKFLGIYAFTDIDFSEPLYPAVSLGG-GQSVEL 118 (124)
T ss_dssp CSCTS-STTTSEEEEEEETTTTEEEEEETTEEEEEEEEESCTTSSSBEEEEEEES-TSEEEE
T ss_pred ccccc-ccCCcEEEEEEeecccEEEEEECCccceeEEEECCCCCCcEEEEEEecC-CCEEEE
Confidence 11112 44 999999997 679999999999988 77877888789999999997 444554
No 6
>smart00449 SPRY Domain in SPla and the RYanodine Receptor. Domain of unknown function. Distant homologues are domains in butyrophilin/marenostrin/pyrin homologues.
Probab=97.84 E-value=0.00079 Score=50.38 Aligned_cols=105 Identities=19% Similarity=0.352 Sum_probs=68.2
Q ss_pred EEEEEEEeecCCccceeEEeeeeeCCCCCCCCCCCCCCCCCCCCCCeeEEecccc--ccccceeeeeeeeccCCchhhhh
Q psy16632 56 KVYVKLLEISTNWSGVIRFGFTANDPAHLKYALPRYVCPDLTNKPGYWAKALAER--FADQETVLFYYVIVQPGYWAKAL 133 (203)
Q Consensus 56 ~f~v~I~~~~~~wsG~l~iGvT~~dP~~l~~~lP~~a~~dL~~~~~~W~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 133 (203)
.|||+|.+ ++.++||+.+.+=.. .. . ..+-....+|.+..... +.++.. . ..
T Consensus 5 YwEV~v~~-----~~~~~vGv~~~~~~r-~~----~--~~~G~~~~sw~~~~~~g~~~~~~~~--~------------~~ 58 (122)
T smart00449 5 YFEVEIFD-----GGHWRVGVATKSVPR-GY----F--ALLGEDKGSWGYDGDGGKKYHNSTG--P------------EY 58 (122)
T ss_pred EEEEEEcC-----CCeEEEEEEcCccCC-Cc----c--ccCCCCCCEEEEEcCCCcEEeCCCC--C------------cc
Confidence 57888875 688999997643211 00 0 11222347898765431 222110 0 01
Q ss_pred hccccCCccEEEEEEC-CCceEEEEEcCcce-eeEeeccCCCCceEEEEeccCCc
Q psy16632 134 AERFADQETVLFYYVT-AAGDVHFGINGEEK-GVFFTGVETRGPLWAMFDIYGNS 186 (203)
Q Consensus 134 ~~~~~~~gd~l~~~~~-~~G~l~~~vNG~~~-G~~~~~v~~~~pLwavvDvyG~t 186 (203)
.......+|+|++.++ ..|+|.|+.||+.. +.++.+++-+++||.+|-+++..
T Consensus 59 ~~~~~~~gd~iGv~lD~~~g~l~F~~ng~~~~~~~f~~~~~~~~l~P~~~~~~~~ 113 (122)
T smart00449 59 GLPLQEPGDVIGCFLDLEAGTISFYKNGKYLHGLAFFDVKFSGPLYPAVSLGSGC 113 (122)
T ss_pred CccccCCCCEEEEEEECCCCEEEEEECCCEeeeEEEeccCCCCcEeeEEEcCCCC
Confidence 1112235999999997 67999999999998 78777787777999999999765
No 7
>KOG4030|consensus
Probab=96.62 E-value=0.081 Score=42.69 Aligned_cols=141 Identities=20% Similarity=0.326 Sum_probs=83.8
Q ss_pred CCCCCccccc-CCCCCEEEecCCeEEEecCcCCceEEEeCCcCCC-CCEEEEEEEeecCCccceeEEeeeeeCCCCCCCC
Q psy16632 10 NNLPPLYFHQ-VHGENVRVSRDGTVAKRYESFCKGVAFSSRPVKI-NEKVYVKLLEISTNWSGVIRFGFTANDPAHLKYA 87 (203)
Q Consensus 10 ~~~~~l~FH~-~~G~nI~Ls~~~~~A~R~~sf~~giVFS~rPL~~-gE~f~v~I~~~~~~wsG~l~iGvT~~dP~~l~~~ 87 (203)
+..+..+.-. ..|++|.|-.++...+-. |=+...-||.. -..|+|+|.+ .|.-.||+-+..-. +. .
T Consensus 24 ~e~P~V~LD~~hMG~dVvilk~g~RicGt-----GG~lAtaPlvQnKsYFevkiQ~-----tG~WgiGlat~q~~-l~-~ 91 (197)
T KOG4030|consen 24 NEVPTVRLDVGHMGKDVVILKEGERICGT-----GGALATAPLVQNKSYFEVKIQQ-----TGTWGIGLATKQSP-LD-K 91 (197)
T ss_pred hcCCcEEeehhccCCcEEEEecCcEEecc-----CceeeeeeeecccceEEEEEee-----cceeeeeeeeccCc-cc-c
Confidence 3445566665 469999998777655533 33445667744 5779999975 34445666553221 11 2
Q ss_pred CCCCCCCCCCCCCCeeEEecccc-ccccceeeeeeeeccCCchhhhhhccccCCccEEEEEECCCceEEEEEcCcceeeE
Q psy16632 88 LPRYVCPDLTNKPGYWAKALAER-FADQETVLFYYVIVQPGYWAKALAERFADQETVLFYYVTAAGDVHFGINGEEKGVF 166 (203)
Q Consensus 88 lP~~a~~dL~~~~~~W~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~l~~~~~~~G~l~~~vNG~~~G~~ 166 (203)
.|-. + ..++|.+..... +.|.+. ..+.-....+.+||++++.-++ =||.|++||...-.-
T Consensus 92 ~p~g-~-----d~~sw~~r~dga~~hnnee------------~~r~pa~~~p~EGDvVGvayDH-VELnfY~NGKn~e~p 152 (197)
T KOG4030|consen 92 VPGG-C-----DEKSWGIRDDGAIAHNNEE------------VARMPATVFPEEGDVVGVAYDH-VELNFYVNGKNVEDP 152 (197)
T ss_pred CCCC-C-----cceeEEEccCCchhcccHH------------HhcCccccCCccCcEEEEEeee-EEEEEEEcCceeccc
Confidence 3422 2 136897743221 111110 0001122356899999987643 589999999998887
Q ss_pred eeccCCCCceEEEEecc
Q psy16632 167 FTGVETRGPLWAMFDIY 183 (203)
Q Consensus 167 ~~~v~~~~pLwavvDvy 183 (203)
+++|.- ++|.|+=|-
T Consensus 153 ~~gvRG--~vyPvvYVd 167 (197)
T KOG4030|consen 153 ITGVRG--PVYPVVYVD 167 (197)
T ss_pred cccccc--ceeeEEEeC
Confidence 888865 899887554
No 8
>KOG2626|consensus
Probab=94.77 E-value=0.19 Score=47.39 Aligned_cols=54 Identities=20% Similarity=0.227 Sum_probs=40.9
Q ss_pred CCCCEEEecCCeEEEecCcCCceEEEeCCcCCCC-CEEEEEEEeecCCccceeEEeeee
Q psy16632 21 HGENVRVSRDGTVAKRYESFCKGVAFSSRPVKIN-EKVYVKLLEISTNWSGVIRFGFTA 78 (203)
Q Consensus 21 ~G~nI~Ls~~~~~A~R~~sf~~giVFS~rPL~~g-E~f~v~I~~~~~~wsG~l~iGvT~ 78 (203)
+..++.+++|+.+|.-.++|.. |=+++-+..| ..|+|.|++. .-.+++|+|.-+
T Consensus 300 rA~ql~Is~drlt~tgeKGy~M--vRAshgv~~G~WYFEI~vd~~--pd~~a~RlGwsq 354 (544)
T KOG2626|consen 300 RAEQLKISEDRLTATGEKGYRM--VRASHGVLEGAWYFEIKVDEM--PDDAAIRLGWSQ 354 (544)
T ss_pred ccccccccccceeeecccceee--eeecccccccceeEEEEeecC--CCccceeeeccc
Confidence 5788999999999988887754 3455555555 7899999887 556889999644
No 9
>KOG3953|consensus
Probab=94.75 E-value=0.097 Score=44.67 Aligned_cols=53 Identities=19% Similarity=0.429 Sum_probs=43.9
Q ss_pred cCCccEEEEEEC-CCceEEEEEcCcceeeEeeccCCCCceEEE-EeccCCceEEEEe
Q psy16632 138 ADQETVLFYYVT-AAGDVHFGINGEEKGVFFTGVETRGPLWAM-FDIYGNSTAIQLI 192 (203)
Q Consensus 138 ~~~gd~l~~~~~-~~G~l~~~vNG~~~G~~~~~v~~~~pLwav-vDvyG~t~~V~lv 192 (203)
...++++.+.++ .+|.|.|.+|++-.|+++++++ +..||++ -.|||.|. |++.
T Consensus 141 ~~vp~ri~viLDm~egtl~F~~~~e~LGvAFRgL~-~~~LYP~Vsav~g~~E-vtm~ 195 (242)
T KOG3953|consen 141 YNVPDRILVILDMIEGTLSFAADGEYLGVAFRGLK-DKKLYPAVSAVWGHCE-VTMK 195 (242)
T ss_pred hcCCceEEEEEeeccceEEEEECCeEEeeeecCCC-CCcceeeeeehhccee-EEEE
Confidence 367788777775 8899999999999999999998 7799955 57889886 6654
No 10
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=83.21 E-value=3.8 Score=29.37 Aligned_cols=40 Identities=20% Similarity=0.282 Sum_probs=26.1
Q ss_pred eEEEeCCcC-CCCCEEEEEEE--eecCCc---cceeEEeeeeeCCCC
Q psy16632 43 GVAFSSRPV-KINEKVYVKLL--EISTNW---SGVIRFGFTANDPAH 83 (203)
Q Consensus 43 giVFS~rPL-~~gE~f~v~I~--~~~~~w---sG~l~iGvT~~dP~~ 83 (203)
+.+|++||+ +|||.+.+++. ..+ .+ .-...+-++-.||+.
T Consensus 2 ~~i~TDr~iYrPGetV~~~~~~~~~~-~~~~~~~~~~~~v~i~dp~g 47 (99)
T PF01835_consen 2 IFIQTDRPIYRPGETVHFRAIVRDLD-NDFKPPANSPVTVTIKDPSG 47 (99)
T ss_dssp EEEEESSSEE-TTSEEEEEEEEEEEC-TTCSCESSEEEEEEEEETTS
T ss_pred EEEECCccCcCCCCEEEEEEEEeccc-cccccccCCceEEEEECCCC
Confidence 679999999 99999999997 443 21 122344455556643
No 11
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=74.99 E-value=18 Score=32.11 Aligned_cols=80 Identities=19% Similarity=0.262 Sum_probs=54.7
Q ss_pred CCCcccccCCCC-CEEEecCCeEEEecCcCCceEEEeCCcCCCCCEEEEEEEee-cCCccceeEEeeeeeCCCCCCC-CC
Q psy16632 12 LPPLYFHQVHGE-NVRVSRDGTVAKRYESFCKGVAFSSRPVKINEKVYVKLLEI-STNWSGVIRFGFTANDPAHLKY-AL 88 (203)
Q Consensus 12 ~~~l~FH~~~G~-nI~Ls~~~~~A~R~~sf~~giVFS~rPL~~gE~f~v~I~~~-~~~wsG~l~iGvT~~dP~~l~~-~l 88 (203)
...|-+|++-|. +|.|..++++..+.+.+..--.|.-..+.+|+.+.|+|.-. ...-...+.|=.++-.+....+ .|
T Consensus 95 ~~~l~v~~C~G~V~v~i~r~gk~l~~~~~v~~~~~f~l~~~~~g~~Yliri~~~~~~e~~~~~kV~aast~~~~~~~P~L 174 (300)
T PF10179_consen 95 SLWLFVQSCSGSVRVEISRNGKILLSQKNVEGLRHFRLSGVKPGERYLIRIQISNSDEGPSTFKVQAASTNPSKQPYPQL 174 (300)
T ss_pred cEEEEEEeCCCeEEEEEEECCeEEeeeecccceEEEEECCCCCCCeEEEEEEccCCCCCceEEEEEEecCCcccCCCCCC
Confidence 445667776555 44456799999998888888889999999999999999321 2222455666545556666554 66
Q ss_pred CCC
Q psy16632 89 PRY 91 (203)
Q Consensus 89 P~~ 91 (203)
|..
T Consensus 175 P~d 177 (300)
T PF10179_consen 175 PDD 177 (300)
T ss_pred CCC
Confidence 654
No 12
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=58.04 E-value=58 Score=25.44 Aligned_cols=41 Identities=24% Similarity=0.253 Sum_probs=34.7
Q ss_pred EEEeCCcCCCCCEEEEEEEee-cCCccceeEEeeeeeCCCCC
Q psy16632 44 VAFSSRPVKINEKVYVKLLEI-STNWSGVIRFGFTANDPAHL 84 (203)
Q Consensus 44 iVFS~rPL~~gE~f~v~I~~~-~~~wsG~l~iGvT~~dP~~l 84 (203)
-|+=+.|+.+|..+.|.+... ...+.|.-.++++...|+..
T Consensus 92 ~I~f~~PV~pG~tv~V~l~~v~NP~~~G~Y~f~v~a~p~G~~ 133 (146)
T PF10989_consen 92 TITFDEPVPPGTTVTVVLSPVRNPRSGGTYQFNVTAFPPGDN 133 (146)
T ss_pred EEEeCCCCCCCCEEEEEEEeeeCCCCCCeEEEEEEEECCCCC
Confidence 456678999999999999665 66677999999999999875
No 13
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=53.31 E-value=18 Score=33.14 Aligned_cols=57 Identities=14% Similarity=0.206 Sum_probs=39.2
Q ss_pred CCCcccccCCCCCEEEecCCeEEEecCcCCc-----eEEEeCC-cCCCCCEEEEEEEeecCCc
Q psy16632 12 LPPLYFHQVHGENVRVSRDGTVAKRYESFCK-----GVAFSSR-PVKINEKVYVKLLEISTNW 68 (203)
Q Consensus 12 ~~~l~FH~~~G~nI~Ls~~~~~A~R~~sf~~-----giVFS~r-PL~~gE~f~v~I~~~~~~w 68 (203)
..++++.+..-+||++-+-.-+-.-...|.. |+.+++. ||.|||.-+|+|+-.+..|
T Consensus 295 ~~~vrlgEF~TA~vRFlN~~~v~~~~~~yP~~lla~GL~v~d~~pI~PGETr~v~v~aqdA~W 357 (399)
T TIGR03079 295 DQVISIGEFTTAGIRFMNANGVRVLDPDYPRELLAEGLEVDDQSAIAPGETVEVKMEAKDALW 357 (399)
T ss_pred CCceEEEeEeecceEeeCcccccccCCCChHHHhhccceeCCCCCcCCCcceEEEEEEehhhh
Confidence 4566666666677777654111122233333 8888886 8999999999999888888
No 14
>COG3269 Predicted RNA-binding protein, contains TRAM domain [General function prediction only]
Probab=51.75 E-value=42 Score=23.65 Aligned_cols=38 Identities=24% Similarity=0.388 Sum_probs=30.5
Q ss_pred eCCcCCCCCEEEEEEEeecCCccceeEE-eeeeeCCCCC
Q psy16632 47 SSRPVKINEKVYVKLLEISTNWSGVIRF-GFTANDPAHL 84 (203)
Q Consensus 47 S~rPL~~gE~f~v~I~~~~~~wsG~l~i-GvT~~dP~~l 84 (203)
..-|+..||.++|+|++...+=.|--++ |++-.-|+.-
T Consensus 9 ~~~PVeeGe~y~V~I~d~g~~GDGiarveGfvVFVp~a~ 47 (73)
T COG3269 9 RTPPVEEGETYEVEIEDVGDQGDGIARVEGFVVFVPGAE 47 (73)
T ss_pred CCCCcccCCEEEEEEEEeccCCCceEEEEEEEEEeCCCC
Confidence 5679999999999999998887775433 8888777763
No 15
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=40.46 E-value=24 Score=21.96 Aligned_cols=20 Identities=20% Similarity=0.373 Sum_probs=16.3
Q ss_pred eEEEeCCcCCCCCEEEEEEE
Q psy16632 43 GVAFSSRPVKINEKVYVKLL 62 (203)
Q Consensus 43 giVFS~rPL~~gE~f~v~I~ 62 (203)
..-++.+||+|||...|++.
T Consensus 25 ~~~~~~~~i~PGes~~i~v~ 44 (45)
T PF07610_consen 25 TAEYSKKPIAPGESGKIKVT 44 (45)
T ss_pred EeeCCcceECCCCEEEEEEE
Confidence 34567899999999999874
No 16
>COG4918 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.43 E-value=41 Score=25.34 Aligned_cols=40 Identities=20% Similarity=0.131 Sum_probs=34.0
Q ss_pred ECCCceEEEEEcCcceeeEeeccCCCCceEEEEeccCCceEEE
Q psy16632 148 VTAAGDVHFGINGEEKGVFFTGVETRGPLWAMFDIYGNSTAIQ 190 (203)
Q Consensus 148 ~~~~G~l~~~vNG~~~G~~~~~v~~~~pLwavvDvyG~t~~V~ 190 (203)
++..++.|+.+|-|-.+-+.++|++ +|.|-..-|.+.+|.
T Consensus 19 ~nl~~~~hl~ydtEgc~Ca~SGi~t---~rlvae~tg~d~~id 58 (114)
T COG4918 19 VNLVFDDHLLYDTEGCACAGSGIST---YRLVAEETGFDASID 58 (114)
T ss_pred cCcCccceEEEeccccccccCCcce---EEEEEeccCcccccc
Confidence 4777889999999999988889998 999988888877653
No 17
>TIGR00541 hisDCase_pyru histidine decarboxylase, pyruvoyl type. This enzyme converts histadine to histamine in a single step by catalyzing the release of CO2. This type is synthesized as an inactive single chain precursor, then cleaved into two chains. The Ser at the new N-terminus at the cleavage site is converted to a pyruvoyl group essential for activity. This type of histidine decarboxylase appears is known so far only in some Gram-positive bacteria, where it may play a role in amino acid catabolism. There is also a pyridoxal phosphate type histidine decarboxylase, as found in human, where histamine is a biologically active amine.
Probab=33.92 E-value=30 Score=30.43 Aligned_cols=39 Identities=21% Similarity=0.203 Sum_probs=33.5
Q ss_pred CCcccccCCCCCEEEecCCeEEEecCcCCceEEEeCCcCCCCCEEEE
Q psy16632 13 PPLYFHQVHGENVRVSRDGTVAKRYESFCKGVAFSSRPVKINEKVYV 59 (203)
Q Consensus 13 ~~l~FH~~~G~nI~Ls~~~~~A~R~~sf~~giVFS~rPL~~gE~f~v 59 (203)
..-||++..|++|.=-+.+.+|.|.. .+||++.||-+-|
T Consensus 139 ~~RRf~~~PGA~vicAnK~vta~rPk--------~~~~~k~ge~ygV 177 (310)
T TIGR00541 139 KDRRFTPAPGAFIICANKGATAERPK--------EDADLKEGEAYGV 177 (310)
T ss_pred ccccCCCCCCceEEeccCcccccCCc--------cccccCcCcccce
Confidence 35799999999999999999999986 4689999987744
No 18
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=33.46 E-value=31 Score=27.59 Aligned_cols=26 Identities=23% Similarity=0.123 Sum_probs=20.7
Q ss_pred EEEeCCcCCCCCEEEEEEEeecCCcc
Q psy16632 44 VAFSSRPVKINEKVYVKLLEISTNWS 69 (203)
Q Consensus 44 iVFS~rPL~~gE~f~v~I~~~~~~ws 69 (203)
-+-+..||++||+++|-|.+.+.--+
T Consensus 52 ~~~t~~pL~~Gq~VeiGi~EkslL~s 77 (150)
T COG3086 52 RVETDEPLEPGQKVELGIEEKSLLKS 77 (150)
T ss_pred EEecCCcCCCCCEEEEccCcccHHHH
Confidence 34689999999999999987654433
No 19
>PF04334 DUF478: Protein of unknown function (DUF478); InterPro: IPR007429 This family contains uncharacterised protein encoded on Trypanosomal kinetoplast minicircles.
Probab=30.84 E-value=48 Score=22.31 Aligned_cols=18 Identities=28% Similarity=0.846 Sum_probs=15.4
Q ss_pred ceEEEEeccCCceEEEEe
Q psy16632 175 PLWAMFDIYGNSTAIQLI 192 (203)
Q Consensus 175 pLwavvDvyG~t~~V~lv 192 (203)
-.|.+|.|.|+.+.|-++
T Consensus 13 lfwgifevrgtskgvgvi 30 (68)
T PF04334_consen 13 LFWGIFEVRGTSKGVGVI 30 (68)
T ss_pred EEEEEEEEeecccceEEE
Confidence 479999999999998764
No 20
>KOG0349|consensus
Probab=29.27 E-value=63 Score=30.77 Aligned_cols=38 Identities=26% Similarity=0.471 Sum_probs=31.5
Q ss_pred CCccEEEEEEC-CCceEEEEEcCcceeeEeeccCC---CCceE
Q psy16632 139 DQETVLFYYVT-AAGDVHFGINGEEKGVFFTGVET---RGPLW 177 (203)
Q Consensus 139 ~~gd~l~~~~~-~~G~l~~~vNG~~~G~~~~~v~~---~~pLw 177 (203)
.-.|+|+-+++ .++++.|..||++.|.+++ ||. ++.||
T Consensus 186 t~~DvIGCyLDld~~~v~fsKNG~~lg~AF~-ip~~~kn~~lf 227 (725)
T KOG0349|consen 186 TLNDVIGCYLDLDSRTVWFSKNGEQLGAAFS-IPVKYKNSNLF 227 (725)
T ss_pred cccceeeEEEeccCceEEEecCccccceeEE-cChhhcccccc
Confidence 56789999998 6689999999999999996 873 34566
No 21
>PF02933 CDC48_2: Cell division protein 48 (CDC48), domain 2; InterPro: IPR004201 This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at the C terminus. The VAT-N domain found in AAA ATPases (IPR003959 from INTERPRO) is a substrate 185-residue recognition domain [].; GO: 0005524 ATP binding; PDB: 1QDN_B 1QCS_A 1CR5_C 3QQ8_A 3HU2_A 3HU1_E 3HU3_A 3QWZ_A 3TIW_B 3QQ7_A ....
Probab=29.08 E-value=49 Score=21.92 Aligned_cols=32 Identities=16% Similarity=0.459 Sum_probs=25.8
Q ss_pred EeCCcCCCCCEEEEEEEeecCCccceeEEeeeeeCCCC
Q psy16632 46 FSSRPVKINEKVYVKLLEISTNWSGVIRFGFTANDPAH 83 (203)
Q Consensus 46 FS~rPL~~gE~f~v~I~~~~~~wsG~l~iGvT~~dP~~ 83 (203)
|-+||+..|+.+.+.+. ...+.+=|++..|..
T Consensus 14 l~~~pv~~Gd~i~~~~~------~~~~~~~V~~~~P~~ 45 (64)
T PF02933_consen 14 LEGRPVTKGDTIVFPFF------GQALPFKVVSTEPSG 45 (64)
T ss_dssp HTTEEEETT-EEEEEET------TEEEEEEEEEECSSS
T ss_pred HcCCCccCCCEEEEEeC------CcEEEEEEEEEEcCC
Confidence 56799999999998885 677888888888876
No 22
>PF01052 SpoA: Surface presentation of antigens (SPOA); InterPro: IPR001543 Proteins in this group are involved in a secretory pathway responsible for the surface presentation of invasion plasmid antigen needed for the entry of Salmonella and other species into mammalian cells [, ].They could play a role in preserving the translocation competence of the IPA antigens and are required for secretion of the three IPA proteins []. The C-terminal region of flagellar motor switch proteins FliN and FliM is also included in this entry. ; PDB: 3UEP_A 1O9Y_B 1YAB_A.
Probab=26.66 E-value=77 Score=21.55 Aligned_cols=27 Identities=19% Similarity=0.089 Sum_probs=20.9
Q ss_pred CCccEEEEEECCCceEEEEEcCcceee
Q psy16632 139 DQETVLFYYVTAAGDVHFGINGEEKGV 165 (203)
Q Consensus 139 ~~gd~l~~~~~~~G~l~~~vNG~~~G~ 165 (203)
..||++-+-...+..+.+.+||...+.
T Consensus 30 ~~Gdvi~l~~~~~~~v~l~v~g~~~~~ 56 (77)
T PF01052_consen 30 KVGDVIPLDKPADEPVELRVNGQPIFR 56 (77)
T ss_dssp -TT-EEEECCESSTEEEEEETTEEEEE
T ss_pred CCCCEEEeCCCCCCCEEEEECCEEEEE
Confidence 889998887778899999999987553
No 23
>KOG4367|consensus
Probab=25.73 E-value=3.1e+02 Score=26.08 Aligned_cols=41 Identities=20% Similarity=0.416 Sum_probs=29.7
Q ss_pred CCccEEEEEEC-CCceEEEEEcCccee-eEeeccCCCCceE-EEEec
Q psy16632 139 DQETVLFYYVT-AAGDVHFGINGEEKG-VFFTGVETRGPLW-AMFDI 182 (203)
Q Consensus 139 ~~gd~l~~~~~-~~G~l~~~vNG~~~G-~~~~~v~~~~pLw-avvDv 182 (203)
.+|.+||+.++ ..|.|.|.||.+..+ ++++++ ..|| .-|.|
T Consensus 639 trgtvigvrldcdrgtmeytvndrqddsmaftnm---rglyypafsv 682 (699)
T KOG4367|consen 639 TRGTVIGVRLDCDRGTMEYTVNDRQDDSMAFTNM---RGLYYPAFSV 682 (699)
T ss_pred ccccEEEEEEeccCCceEEEeccccCCceeeecc---cceeeeeeEe
Confidence 67889999997 669999999999766 455555 2343 44544
No 24
>cd05684 S1_DHX8_helicase S1_DHX8_helicase: The N-terminal S1 domain of human ATP-dependent RNA helicase DHX8, a DEAH (Asp-Glu-Ala-His) box polypeptide. The DEAH-box RNA helicases are thought to play key roles in pre-mRNA splicing and DHX8 facilitates nuclear export of spliced mRNA by releasing the RNA from the spliceosome. DHX8 is also known as HRH1 (human RNA helicase 1) in Homo sapiens and PRP22 in Saccharomyces cerevisiae.
Probab=24.40 E-value=1.8e+02 Score=19.59 Aligned_cols=30 Identities=33% Similarity=0.462 Sum_probs=23.8
Q ss_pred CCCCCEEEEEEEeecCCccceeEEeeeeeCCCC
Q psy16632 51 VKINEKVYVKLLEISTNWSGVIRFGFTANDPAH 83 (203)
Q Consensus 51 L~~gE~f~v~I~~~~~~wsG~l~iGvT~~dP~~ 83 (203)
++.|+.+.++|.+.+ .|-+.+.+-..+|.+
T Consensus 49 ~~~Gd~v~v~v~~vd---~~~i~~s~k~~~~~~ 78 (79)
T cd05684 49 VKRGQKVKVKVISIQ---NGKISLSMKDVDQDT 78 (79)
T ss_pred eCCCCEEEEEEEEEe---CCEEEEEEEecccCC
Confidence 589999999999887 687887776666653
No 25
>TIGR02480 fliN flagellar motor switch protein FliN. Proteins that consist largely of the domain described by this model can be designated flagellar motor switch protein FliN. Longer proteins in which this region is a C-terminal domain typically are designated FliY. More distantly related sequences, outside the scope of this family, are associated with type III secretion and include the surface presentation of antigens protein SpaO required or invasion of host cells by Salmonella enterica.
Probab=22.15 E-value=1.2e+02 Score=21.02 Aligned_cols=29 Identities=14% Similarity=0.006 Sum_probs=22.8
Q ss_pred cCCccEEEEEECCCceEEEEEcCcceeeE
Q psy16632 138 ADQETVLFYYVTAAGDVHFGINGEEKGVF 166 (203)
Q Consensus 138 ~~~gd~l~~~~~~~G~l~~~vNG~~~G~~ 166 (203)
...||++-+-...+..+-+++||...+..
T Consensus 29 L~~Gdvi~L~~~~~~~v~l~v~g~~~~~g 57 (77)
T TIGR02480 29 LGEGSVIELDKLAGEPLDILVNGRLIARG 57 (77)
T ss_pred CCCCCEEEcCCCCCCcEEEEECCEEEEEE
Confidence 38899987766677889999999876543
No 26
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=21.66 E-value=1.6e+02 Score=23.89 Aligned_cols=32 Identities=16% Similarity=0.112 Sum_probs=20.9
Q ss_pred CCccEEEEEECCCceEEEEEcCcceeeEeeccC
Q psy16632 139 DQETVLFYYVTAAGDVHFGINGEEKGVFFTGVE 171 (203)
Q Consensus 139 ~~gd~l~~~~~~~G~l~~~vNG~~~G~~~~~v~ 171 (203)
+.||.++|.... +.=|.+||-.++-+..-+|-
T Consensus 87 rpGD~~gFpAG~-~~aHhliN~s~~~~~yL~vG 118 (161)
T COG3837 87 RPGDSAGFPAGV-GNAHHLINRSDVILRYLEVG 118 (161)
T ss_pred cCCceeeccCCC-cceeEEeecCCceEEEEEec
Confidence 778888886544 67777887766554444554
No 27
>PF02329 HDC: Histidine carboxylase PI chain; InterPro: IPR003427 Histidine decarboxylase (4.1.1.2 from EC) catalyses the formation of histamine from histidine []. It requires a pyruvoyl group for its activity. Cleavage of the proenzyme PI chain yields two subunits, alpha and beta, which arrange as a hexamer (alpha beta) 6 by nonhydrolytic self-catalysis.; GO: 0004398 histidine decarboxylase activity, 0006547 histidine metabolic process; PDB: 1IBU_C 1IBV_A 1IBW_C 1IBT_C 1HQ6_B 1PYA_E.
Probab=21.25 E-value=97 Score=27.44 Aligned_cols=32 Identities=25% Similarity=0.279 Sum_probs=22.4
Q ss_pred CCcccccCCCCCEEEecCCeEEEecCcCCceEEEeCCcCCCC
Q psy16632 13 PPLYFHQVHGENVRVSRDGTVAKRYESFCKGVAFSSRPVKIN 54 (203)
Q Consensus 13 ~~l~FH~~~G~nI~Ls~~~~~A~R~~sf~~giVFS~rPL~~g 54 (203)
..-|||+..|++|.=-+...+|+|.. ||++.|
T Consensus 146 ~~rRf~~~PGA~vicAnK~vtA~rP~----------~~~k~g 177 (306)
T PF02329_consen 146 DERRFPPAPGAHVICANKGVTAYRPK----------RDLKEG 177 (306)
T ss_dssp SSB-S-B-TT-EEEEEEEEEEEEE-S----------SS-TSS
T ss_pred ccccCCCCCCcEEEeccccccccCCC----------ccccCC
Confidence 35699999999999999999999976 777777
No 28
>PF13889 Chromosome_seg: Chromosome segregation during meiosis
Probab=21.21 E-value=1.5e+02 Score=19.83 Aligned_cols=21 Identities=19% Similarity=0.205 Sum_probs=15.6
Q ss_pred eEEEeCCcCCCCC-EEEEEEEe
Q psy16632 43 GVAFSSRPVKINE-KVYVKLLE 63 (203)
Q Consensus 43 giVFS~rPL~~gE-~f~v~I~~ 63 (203)
=+||++|..-..| ++..+++-
T Consensus 26 RvvF~~r~~d~de~~L~~~~~~ 47 (56)
T PF13889_consen 26 RVVFARRSPDSDEGELRSETEY 47 (56)
T ss_pred EEEEeccCCCCCccEEEEEEeC
Confidence 3899999988888 66665553
No 29
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.08 E-value=3.3e+02 Score=26.36 Aligned_cols=34 Identities=21% Similarity=0.503 Sum_probs=26.8
Q ss_pred EEEEEEeecCCccceeEEeeeeeCCCCCCC--CCCCC
Q psy16632 57 VYVKLLEISTNWSGVIRFGFTANDPAHLKY--ALPRY 91 (203)
Q Consensus 57 f~v~I~~~~~~wsG~l~iGvT~~dP~~l~~--~lP~~ 91 (203)
|+|+++ ..-.|+|.+.|-|+.-+|..... .||.-
T Consensus 401 v~irqe-t~yPw~g~v~ltv~~~~p~~~tlaLRlP~W 436 (589)
T COG3533 401 VQIRQE-TNYPWSGQVKLTVERAQPVLFTLALRLPAW 436 (589)
T ss_pred eEEEec-cCCCCcCeeEEEEecCCCceEEEEEecccc
Confidence 777764 68999999999999999987644 56644
No 30
>COG2373 Large extracellular alpha-helical protein [General function prediction only]
Probab=20.82 E-value=1.9e+02 Score=31.66 Aligned_cols=59 Identities=15% Similarity=0.000 Sum_probs=42.4
Q ss_pred CCCcccccCCCCCEEEecCCeEEEecCc-CCceEEEeCCcC-CCCCEEEEEEEeecCCccc
Q psy16632 12 LPPLYFHQVHGENVRVSRDGTVAKRYES-FCKGVAFSSRPV-KINEKVYVKLLEISTNWSG 70 (203)
Q Consensus 12 ~~~l~FH~~~G~nI~Ls~~~~~A~R~~s-f~~giVFS~rPL-~~gE~f~v~I~~~~~~wsG 70 (203)
...+.|-..+|..+-+++-+-..+.... --++..||+|+| |+||.+.+.+.-....|..
T Consensus 364 ~~~~~~~d~~~~~~d~s~f~V~g~~~~~~~~k~y~ftDRglYRpGE~v~~~~~~R~~~~~~ 424 (1621)
T COG2373 364 DGDFLGLDLTGGVFDLSDFDVEGRAAPGYGLKVYLFTDRGLYRPGETVHVNALLRDFDGKT 424 (1621)
T ss_pred CCceEEEEcCCCccccccccccceecCCCceEEEEecCcccCCCCceeeeeeeehhhcccc
Confidence 3344555567777777655444444333 468899999999 9999999999888888873
No 31
>KOG3287|consensus
Probab=20.79 E-value=1.3e+02 Score=25.72 Aligned_cols=34 Identities=26% Similarity=0.352 Sum_probs=28.4
Q ss_pred CcCCCCCEEEEEEEeecCCccceeEEeeeeeCCCCC
Q psy16632 49 RPVKINEKVYVKLLEISTNWSGVIRFGFTANDPAHL 84 (203)
Q Consensus 49 rPL~~gE~f~v~I~~~~~~wsG~l~iGvT~~dP~~l 84 (203)
.|.+-++.|+++...+.. +|-+-+++|..+|...
T Consensus 50 Q~v~~~~tle~eyQVi~G--~GDl~i~Ftl~~P~G~ 83 (236)
T KOG3287|consen 50 QPVPQGATLEVEYQVIDG--AGDLDIDFTLLNPAGE 83 (236)
T ss_pred eeccCCeEEEEEEEEEec--CCccceeeEEeCCCcc
Confidence 467778999998876655 8999999999999973
No 32
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=20.04 E-value=2e+02 Score=19.59 Aligned_cols=26 Identities=19% Similarity=0.324 Sum_probs=18.8
Q ss_pred ccEEEEEECCCceEEEEEcCcceeeE
Q psy16632 141 ETVLFYYVTAAGDVHFGINGEEKGVF 166 (203)
Q Consensus 141 gd~l~~~~~~~G~l~~~vNG~~~G~~ 166 (203)
...+.+.+..-+-+.+.+||++.+++
T Consensus 37 ~~~~~i~iGna~~v~v~~nG~~~~~~ 62 (77)
T PF13464_consen 37 KEPFRIRIGNAGAVEVTVNGKPVDLL 62 (77)
T ss_pred CCCEEEEEeCCCcEEEEECCEECCCC
Confidence 44455666667788999999887764
Done!