Query psy16632
Match_columns 203
No_of_seqs 115 out of 279
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 17:51:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16632.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16632hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yue_A Protein neuralized; str 100.0 6.8E-58 2.3E-62 369.7 15.4 162 8-195 2-163 (168)
2 2e63_A KIAA1787 protein; struc 100.0 9.3E-53 3.2E-57 340.3 17.8 164 12-192 4-170 (170)
3 2yyo_A SPRY domain-containing 98.5 1.3E-05 4.4E-10 63.8 17.1 144 21-191 7-159 (171)
4 3toj_A SET1/ASH2 histone methy 98.3 3E-05 1E-09 63.7 15.7 148 14-191 12-172 (213)
5 3emw_A SPRY domain-containing 98.1 0.00017 5.8E-09 59.4 15.4 160 15-192 44-213 (217)
6 2jk9_A SPRY domain-containing 97.6 0.0034 1.2E-07 50.9 16.2 162 15-192 33-204 (212)
7 2afj_A Gene rich cluster, C9 g 97.0 0.0073 2.5E-07 49.6 11.6 163 15-194 41-214 (226)
8 2vok_A 52 kDa RO protein; poly 96.0 0.47 1.6E-05 37.9 17.4 155 13-193 9-185 (188)
9 3uv9_A TRIM5alpha, tripartite 95.8 0.19 6.7E-06 40.0 12.4 152 24-194 23-184 (186)
10 2fbe_A Predicted: similar to R 94.6 1.4 4.8E-05 35.4 16.4 156 14-194 11-186 (201)
11 2wl1_A Pyrin, marenostrin; amy 93.6 2.2 7.4E-05 33.9 16.1 155 14-193 14-189 (191)
12 4b3n_A Maltose-binding peripla 83.8 14 0.00047 33.9 12.3 152 24-191 421-601 (602)
13 3kb5_A Tripartite motif-contai 83.4 15 0.00051 28.9 14.9 147 14-183 13-179 (193)
14 2p9r_A Alpha-2-M, alpha-2-macr 48.4 20 0.00068 24.7 3.9 26 42-67 3-29 (102)
15 1pya_B Pyruvoyl-dependent hist 44.2 12 0.00042 30.5 2.4 48 13-77 57-104 (229)
16 4doo_A Chalcone-flavanone isom 36.7 35 0.0012 27.0 4.1 28 139-166 141-168 (205)
17 2jv2_A Putative uncharacterize 36.0 28 0.00096 23.9 2.9 32 45-82 36-67 (83)
18 4fxk_A Complement C4 beta chai 33.3 37 0.0013 30.9 4.2 28 39-66 116-146 (656)
19 1n0w_B Breast cancer type 2 su 29.8 9.7 0.00033 22.0 -0.3 19 12-30 3-21 (35)
20 4a0t_A Tail fiber protein; vir 29.4 32 0.0011 27.1 2.6 28 8-35 75-103 (227)
21 3rfr_A PMOB; membrane, oxidore 27.4 26 0.00091 31.1 2.0 57 12-69 311-372 (419)
22 3uep_A YSCQ-C, type III secret 21.6 96 0.0033 21.6 3.7 28 138-165 40-67 (96)
No 1
>2yue_A Protein neuralized; structure genomics, NEUZ(NHR) domain, structural genomics, NPPSFA; NMR {Drosophila melanogaster}
Probab=100.00 E-value=6.8e-58 Score=369.72 Aligned_cols=162 Identities=59% Similarity=1.164 Sum_probs=152.8
Q ss_pred CCCCCCCcccccCCCCCEEEecCCeEEEecCcCCceEEEeCCcCCCCCEEEEEEEeecCCccceeEEeeeeeCCCCCCCC
Q psy16632 8 GTNNLPPLYFHQVHGENVRVSRDGTVAKRYESFCKGVAFSSRPVKINEKVYVKLLEISTNWSGVIRFGFTANDPAHLKYA 87 (203)
Q Consensus 8 ~~~~~~~l~FH~~~G~nI~Ls~~~~~A~R~~sf~~giVFS~rPL~~gE~f~v~I~~~~~~wsG~l~iGvT~~dP~~l~~~ 87 (203)
+++..++|+||+.||+||+|++++++|+|.++|++|||||+|||++||+|+|||++.+.+|+|+|+||||+|||++++.+
T Consensus 2 ~~~~~~~l~FH~~~G~nI~L~~~~~~A~R~~sf~~givFS~RPl~~~E~~~v~I~~~~~~wsG~l~~GvT~~dP~~l~~~ 81 (168)
T 2yue_A 2 SSGSSGPLQFHSVHGDNIRISRDGTLARRFESFCRAITFSARPVRINERICVKFAEISNNWNGGIRFGFTSNDPVTLEGT 81 (168)
T ss_dssp CCCCCSSCCEEEEECTTEEECCSSCCEEECSCSSCCEEEESSCCCSSCCEEEEEEECCSSSSSCCEEEEESSCGGGTTTC
T ss_pred CCCCCCCcccccccCCCeEECCCCcEEEecccCCceEEEECCCCcCCCEEEEEEEeecCCcceeEEEeeeecCHHHcCCC
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999756
Q ss_pred CCCCCCCCCCCCCCeeEEeccccccccceeeeeeeeccCCchhhhhhccccCCccEEEEEECCCceEEEEEcCcceeeEe
Q psy16632 88 LPRYVCPDLTNKPGYWAKALAERFADQETVLFYYVIVQPGYWAKALAERFADQETVLFYYVTAAGDVHFGINGEEKGVFF 167 (203)
Q Consensus 88 lP~~a~~dL~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~l~~~~~~~G~l~~~vNG~~~G~~~ 167 (203)
||++|||||.++++||++++++.++ ..||+++|+++++|+|||+|||+++|+++
T Consensus 82 lP~~a~~dL~~~~~~W~~~l~~~~~--------------------------~~g~~l~f~v~~~G~l~~~iNg~~~g~~~ 135 (168)
T 2yue_A 82 LPKYACPDLTNRPGFWAKALHEQYC--------------------------EKDNILYYYVNGAGDVIYGINNEEKGVIL 135 (168)
T ss_dssp CCSSSSSHHHHSTTBCCEECCSTTC--------------------------CSSCEEEEEECTTSEEEEEESSCEEEEEE
T ss_pred CCCcCchHHhcCCCEEEEEeccccc--------------------------cCCCEEEEEEcCCCEEEEEECCCccEEEE
Confidence 9998899999999999998766554 77999999999999999999999999999
Q ss_pred eccCCCCceEEEEeccCCceEEEEecCc
Q psy16632 168 TGVETRGPLWAMFDIYGNSTAIQLIDSR 195 (203)
Q Consensus 168 ~~v~~~~pLwavvDvyG~t~~V~lv~~~ 195 (203)
++||+++||||||||||+|+||+|++++
T Consensus 136 ~~V~~~~pLwavvDvyG~t~~V~il~~~ 163 (168)
T 2yue_A 136 TGIDTRSLLWTVIDIYGNCTGIEFLDSR 163 (168)
T ss_dssp ECCCCSSCCEEEEECCSSCSEEEEECHH
T ss_pred cCCCCCCceEEEEEccCCeEEEEEecce
Confidence 9999999999999999999999999865
No 2
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=9.3e-53 Score=340.28 Aligned_cols=164 Identities=29% Similarity=0.430 Sum_probs=150.1
Q ss_pred CCCcccccCCCCCEEEecCCeEEEec---CcCCceEEEeCCcCCCCCEEEEEEEeecCCccceeEEeeeeeCCCCCCCCC
Q psy16632 12 LPPLYFHQVHGENVRVSRDGTVAKRY---ESFCKGVAFSSRPVKINEKVYVKLLEISTNWSGVIRFGFTANDPAHLKYAL 88 (203)
Q Consensus 12 ~~~l~FH~~~G~nI~Ls~~~~~A~R~---~sf~~giVFS~rPL~~gE~f~v~I~~~~~~wsG~l~iGvT~~dP~~l~~~l 88 (203)
+.+++||+.||+||+|++++++|+|. ++|++|||||+|||++||+|+|||++.+.+|+|+|++|||+|||++++ +
T Consensus 4 ~~~l~FH~~hG~nI~L~~~~~~A~R~~~~~~f~~givFS~rPl~~~E~~~v~I~~~~~~wsG~l~~GvT~~dP~~l~--l 81 (170)
T 2e63_A 4 GSSGELHPRTGRLVSLSACGRTARRQQPGQEFNHGLVLSREPLRDGRVFTVRIDRKVNSWSGSIEIGVTALDPSVLD--F 81 (170)
T ss_dssp CCSSCCCSCCCSSEEECSSSCEEEESCTTTCSCSCCEEEEEEECTTCEEEEEEEEECCSSCCCCEEEEESSCTTSCC--C
T ss_pred ccccccccccCCCeEECCCCeEEEeCCCCcccCceEEEECCCCCCCCEEEEEEEeecCCcceeEEEEEEccChhhcc--C
Confidence 56789999999999999999999998 699999999999999999999999999999999999999999999995 7
Q ss_pred CCCCCCCCCCCCCeeEEeccccccccceeeeeeeeccCCchhhhhhccccCCccEEEEEECCCceEEEEEcCcceeeEee
Q psy16632 89 PRYVCPDLTNKPGYWAKALAERFADQETVLFYYVIVQPGYWAKALAERFADQETVLFYYVTAAGDVHFGINGEEKGVFFT 168 (203)
Q Consensus 89 P~~a~~dL~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~l~~~~~~~G~l~~~vNG~~~G~~~~ 168 (203)
|+++ ++| +++||+++++.+..||..+.++|+ ..++ .+..||+++|+++++|+|||+|||+++|++++
T Consensus 82 P~~~-~~L--~~~~Wv~~~~~v~~ng~~~~e~~~-----~~l~-----~l~~Gd~ig~~~~~~G~l~~~iNg~~~g~~~~ 148 (170)
T 2e63_A 82 PSSA-TGL--KGGSWVVSGCSVLRDGRSVLEEYG-----QDLD-----QLGEGDRVGVERTVAGELRLWVNGRDCGVAAT 148 (170)
T ss_dssp CSSG-GGC--CSSEEEESSSEEEESSCEEEESCS-----SCGG-----GCCSSCCEEEEECTTSCEEEEESSCEEEEEEC
T ss_pred CCCh-hhC--CCCeEEEeccccccCCcccchhcc-----cccc-----ccCCCCEEEEEEcCCcEEEEEECCccceeeEc
Confidence 9886 888 469999998888889988888886 1111 23799999999999999999999999999999
Q ss_pred ccCCCCceEEEEeccCCceEEEEe
Q psy16632 169 GVETRGPLWAMFDIYGNSTAIQLI 192 (203)
Q Consensus 169 ~v~~~~pLwavvDvyG~t~~V~lv 192 (203)
+|| +||||||||||+|+||+|+
T Consensus 149 ~ip--~~LwavvDvyG~t~~V~iv 170 (170)
T 2e63_A 149 GLP--PRVWAVVDLYGKCTQITVL 170 (170)
T ss_dssp CCC--SCEEEEEECCTTEEEEEEC
T ss_pred CCC--CcEEEEEEccCCEEEEEEC
Confidence 887 5999999999999999986
No 3
>2yyo_A SPRY domain-containing protein 3; NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens}
Probab=98.49 E-value=1.3e-05 Score=63.82 Aligned_cols=144 Identities=15% Similarity=0.161 Sum_probs=94.2
Q ss_pred CCCCEEEecCCeEEEecCcCCceEEEeCCcCCCC-CEEEEEEEeecCCccceeEEeeeeeCCCCCCCCCCCCCCCCCCCC
Q psy16632 21 HGENVRVSRDGTVAKRYESFCKGVAFSSRPVKIN-EKVYVKLLEISTNWSGVIRFGFTANDPAHLKYALPRYVCPDLTNK 99 (203)
Q Consensus 21 ~G~nI~Ls~~~~~A~R~~sf~~giVFS~rPL~~g-E~f~v~I~~~~~~wsG~l~iGvT~~dP~~l~~~lP~~a~~dL~~~ 99 (203)
+..+|.++++..+... .+..-+.|.++.|+..| -.|||+|.+... .|.++||+.+.+ ..+. .+| .- .
T Consensus 7 r~~~l~~~~d~l~~~~-~~~~~~~vra~~p~~~g~~YfEv~i~~~~~--~~~~~IG~a~~~-~~~~-~~~-----G~--d 74 (171)
T 2yyo_A 7 GFKHILVDGDTLSYHG-NSGEVGCYVASRPLTKDSNYFEVSIVDSGV--RGTIAVGLVPQY-YSLD-HQP-----GW--L 74 (171)
T ss_dssp EEESEEEETTEEEECC-CSSCCEEEECSSCCCSSSCEEEEEEEEETT--TCCCEEEEECTT-CCTT-SCT-----TS--S
T ss_pred CcceEEEcCCEEEEeC-CCCceeEEEECCCCCCCCEEEEEEEEECCC--CcEEEEEecCCC-CCCc-cCC-----Cc--c
Confidence 3457888777544333 23355889999999776 578999987543 589999998732 2221 122 11 2
Q ss_pred CCeeEEecccc--ccccceeeeeeeeccCCchhhhhhccccCCccEEEEEECCC------ceEEEEEcCcceeeEeeccC
Q psy16632 100 PGYWAKALAER--FADQETVLFYYVIVQPGYWAKALAERFADQETVLFYYVTAA------GDVHFGINGEEKGVFFTGVE 171 (203)
Q Consensus 100 ~~~W~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~l~~~~~~~------G~l~~~vNG~~~G~~~~~v~ 171 (203)
..+|.+...+. +.+.. .-..|+ +.-..||+|++.++.+ ++|.|..||+..|+++.+++
T Consensus 75 ~~S~gy~~~dG~~~~~~~-~~~~yg-------------~~f~~GDvIGc~id~~~~~~~~~~i~Ft~NG~~lg~af~~~~ 140 (171)
T 2yyo_A 75 PDSVAYHADDGKLYNGRA-KGRQFG-------------SKCNSGDRIGCGIEPVSFDVQTAQIFFTKNGKRVGSTIMPMS 140 (171)
T ss_dssp TTCEEEETTTCCEESSSS-CCBCCS-------------CCCCTTCEEEEEECGGGGSSSCEEEEEEETTEEEEEEEESSC
T ss_pred CCEEEEEcCCCeEEeCCC-CCCcCC-------------CCCCCCCEEEEEEEeccCCCCcEEEEEEECCEEcCceecCCc
Confidence 35787754322 21110 011121 1227899999999854 99999999999999998886
Q ss_pred CCCceEEEEeccCCceEEEE
Q psy16632 172 TRGPLWAMFDIYGNSTAIQL 191 (203)
Q Consensus 172 ~~~pLwavvDvyG~t~~V~l 191 (203)
. .+||..|-++..-.+|++
T Consensus 141 ~-~~lyPaV~l~~~g~~v~v 159 (171)
T 2yyo_A 141 P-DGLFPAVGMHSLGEEVRL 159 (171)
T ss_dssp S-SSCEEEEEECSTTEEEEE
T ss_pred C-CCEEEEEEEecCCCEEEE
Confidence 3 489999999863344655
No 4
>3toj_A SET1/ASH2 histone methyltransferase complex subun; transcription, SPRY domain, prote binding, histone methylation, RBBP5, DPY-30, nuclear; 2.07A {Homo sapiens}
Probab=98.31 E-value=3e-05 Score=63.74 Aligned_cols=148 Identities=15% Similarity=0.202 Sum_probs=97.9
Q ss_pred Cccccc-CCCCCEEEecCCeEEEecCcCCceEEEeCCcCCCCC-EEEEEEEeecCCccceeEEeeeeeCCCCCCCCCCCC
Q psy16632 14 PLYFHQ-VHGENVRVSRDGTVAKRYESFCKGVAFSSRPVKINE-KVYVKLLEISTNWSGVIRFGFTANDPAHLKYALPRY 91 (203)
Q Consensus 14 ~l~FH~-~~G~nI~Ls~~~~~A~R~~sf~~giVFS~rPL~~gE-~f~v~I~~~~~~wsG~l~iGvT~~dP~~l~~~lP~~ 91 (203)
...+-+ .++.++.|++|+.++++..++ +-|-++.|+..|. .|||+|.+.. -.|.++||+.+.. ..+ .
T Consensus 12 ~v~ld~~d~~~~l~ls~d~l~v~~~~~~--~~vra~~~v~~G~~YfEV~v~~~~--~~~~~~iG~a~~~-~~~------~ 80 (213)
T 3toj_A 12 RVLLALHDRAPQLKISDDRLTVVGEKGY--SMVRASHGVRKGAWYFEITVDEMP--PDTAARLGWSQPL-GNL------Q 80 (213)
T ss_dssp CCCEEEEEECTTSEECTTSSEEECCSSC--EEEEESCCBSSEEEEEEEEEEECC--TTCEEEEEEECTT-SCT------T
T ss_pred eEEechhhCCCCEEEcCCCcEEEeCCce--eEEEeCCCccCCeEEEEEEEeecC--CCceEEEEeccCC-ccc------c
Confidence 344554 478899999999999875433 6788999998763 4788887642 3578999998643 111 1
Q ss_pred CCCCCCCCCCeeEEecccc--ccccceeeeeeeeccCCchhhhhhccccCCccEEEEEECC-C--------ceEEEEEcC
Q psy16632 92 VCPDLTNKPGYWAKALAER--FADQETVLFYYVIVQPGYWAKALAERFADQETVLFYYVTA-A--------GDVHFGING 160 (203)
Q Consensus 92 a~~dL~~~~~~W~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~l~~~~~~-~--------G~l~~~vNG 160 (203)
.. +-....+|.+..... +.|+. ...|+ ..-..||+||+.++- + |+|.|+.||
T Consensus 81 ~~--~G~d~~S~gy~~~~G~~~h~~~--~~~yg-------------~~~~~GDvIGc~ld~~~~~~~~~~~g~i~Ft~NG 143 (213)
T 3toj_A 81 AP--LGYDKFSYSWRSKKGTKFHQSI--GKHYS-------------SGYGQGDVLGFYINLPEDTISGRGSSEIIFYKNG 143 (213)
T ss_dssp SC--TTSSTTEEEEETTTTCEEETTE--EECCS-------------CCCCTTCEEEEEEEECCC-----CCCEEEEEETT
T ss_pred cC--CCCCCCcEEEECCCCeEEeCCc--CcccC-------------CCCCCCCEEEEEEEcCCCccccCCccEEEEEeCC
Confidence 11 111246788742221 22221 11221 112789999998873 2 799999999
Q ss_pred cceeeEeeccCCCCceEEEEeccCCceEEEE
Q psy16632 161 EEKGVFFTGVETRGPLWAMFDIYGNSTAIQL 191 (203)
Q Consensus 161 ~~~G~~~~~v~~~~pLwavvDvyG~t~~V~l 191 (203)
+..|.+++++.. .+||..|-++.. .+|++
T Consensus 144 ~~lg~aF~~~~~-~~lyPavsl~~~-~~v~~ 172 (213)
T 3toj_A 144 VNQGVAYKDIFE-GVYFPAISLYKS-CTVSI 172 (213)
T ss_dssp EEEEEEEESCCS-SCBEEEEEEESS-CEEEE
T ss_pred eeeeeeEEcCCC-CcEEEEEEcCCC-CEEEE
Confidence 999999998864 489999998753 24554
No 5
>3emw_A SPRY domain-containing SOCS box protein 2; apoptosis nucleus, apoptosis, UBL conjugation pathwayc, CL transcription regulation, transcription, phosphoprotein; 1.80A {Homo sapiens} PDB: 3ek9_A
Probab=98.07 E-value=0.00017 Score=59.41 Aligned_cols=160 Identities=13% Similarity=0.120 Sum_probs=97.5
Q ss_pred ccccc-CCCCCEEEecCCeEEEec---CcCCceEEEeCCcCCCCC-EEEEEEEeecCCccceeEEeeeeeCCCCCCCCCC
Q psy16632 15 LYFHQ-VHGENVRVSRDGTVAKRY---ESFCKGVAFSSRPVKINE-KVYVKLLEISTNWSGVIRFGFTANDPAHLKYALP 89 (203)
Q Consensus 15 l~FH~-~~G~nI~Ls~~~~~A~R~---~sf~~giVFS~rPL~~gE-~f~v~I~~~~~~wsG~l~iGvT~~dP~~l~~~lP 89 (203)
+++-+ ....++.||+|++.+++. +.| ..|.+..++..|. .|||+|.+... .+...|||....-..-+.. .
T Consensus 44 ~tlDp~ta~~~L~lSed~~~v~~~~~~~~~--~~Vl~~~~~~sGrhYWEV~v~~~~~--g~~~~vGv~~~~~~r~~~g-~ 118 (217)
T 3emw_A 44 HGWNPKDCSENIEVKEGGLYFERRPVAQST--DGARGKRGYSRGLHAWEISWPLEQR--GTHAVVGVATALAPLQTDH-Y 118 (217)
T ss_dssp TSEEEEEECTTEEEEGGGTEEEECCBSSCE--EEEEESCCBSSSEEEEEEECCGGGC--TTCCEEEEECTTSCCEESS-S
T ss_pred eEeCcccCCCCEEECCCCeEEEECccCCCC--CEEEeCCCccCccEEEEEEEcccCC--CCceeEEEEcCccccccCC-c
Confidence 44555 567899999999988874 344 4788999998774 46777754211 1368899977543210000 0
Q ss_pred CCCCCCCCCCCCeeEEecccc--cccccee-eeeeeeccCCchhhhhhccccCCccEEEEEEC-CCceEEEEEcCcceee
Q psy16632 90 RYVCPDLTNKPGYWAKALAER--FADQETV-LFYYVIVQPGYWAKALAERFADQETVLFYYVT-AAGDVHFGINGEEKGV 165 (203)
Q Consensus 90 ~~a~~dL~~~~~~W~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~gd~l~~~~~-~~G~l~~~vNG~~~G~ 165 (203)
. ..+-....+|.+..... ..|+... ...|. ..+.......+++|++.++ ..|.|.|++||+..|+
T Consensus 119 ~---~~lG~~~~SW~l~~~~g~~~h~~~~~~~~~~~--------~~~~~~~~~~~d~IGV~LD~~~G~LsFy~ng~~lg~ 187 (217)
T 3emw_A 119 A---ALLGSNSESWGWDIGRGKLYHQSKGPGAPQYP--------AGTQGEQLEVPERLLVVLDMEEGTLGYAIGGTYLGP 187 (217)
T ss_dssp C---CCTTSSTTEEEEETTTCBEESSCCSSCCCBSS--------SSSTTCCCCCCSEEEEEEETTTTEEEEEETTEEEEE
T ss_pred c---ccccCCCCEEEEEeCCCcEEeCCcccCCcccc--------ccccccCCCCCCEEEEEEEcCCCEEEEEECCeEeEE
Confidence 0 11222347898864221 1121100 00110 0000011267899999998 7799999999999999
Q ss_pred EeeccCCCCceEEEEecc-CCceEEEEe
Q psy16632 166 FFTGVETRGPLWAMFDIY-GNSTAIQLI 192 (203)
Q Consensus 166 ~~~~v~~~~pLwavvDvy-G~t~~V~lv 192 (203)
+++++. +++||..|-+. |.|+ |+|+
T Consensus 188 aF~~~~-~~~LyP~~sl~~g~~~-v~l~ 213 (217)
T 3emw_A 188 AFRGLK-GRTLYPAVSAVWGQCQ-VRIR 213 (217)
T ss_dssp EECCCT-TCCBEEEEEECSTTCE-EEEE
T ss_pred EEECCC-CCEEEEEEEeccCCcE-EEEE
Confidence 999876 46899999875 5443 6654
No 6
>2jk9_A SPRY domain-containing SOCS box protein 1; transcription regulation, transcription; 1.79A {Homo sapiens} PDB: 3f2o_A 2fnj_A 2v24_A 2ihs_A
Probab=97.64 E-value=0.0034 Score=50.93 Aligned_cols=162 Identities=14% Similarity=0.149 Sum_probs=95.6
Q ss_pred ccccc-CCCCCEEEecCCe-EEEec-CcCCceEEEeCCcCCCCC-EEEEEEEeecCCccceeEEeeeeeCCCCCCCCCCC
Q psy16632 15 LYFHQ-VHGENVRVSRDGT-VAKRY-ESFCKGVAFSSRPVKINE-KVYVKLLEISTNWSGVIRFGFTANDPAHLKYALPR 90 (203)
Q Consensus 15 l~FH~-~~G~nI~Ls~~~~-~A~R~-~sf~~giVFS~rPL~~gE-~f~v~I~~~~~~wsG~l~iGvT~~dP~~l~~~lP~ 90 (203)
+.+.+ ....++.|++|++ +.++. ....-..|.+..++..|. .|||+|.+.. -++..+|||....-..-.. .
T Consensus 33 ~tldp~ta~~~L~lsed~~~~~~~~~~~~~~~~Vlg~~~f~sGrhYWEV~v~~~~--~~~~w~vGV~~~~~~r~~~---g 107 (212)
T 2jk9_A 33 HSWNNNDRSLNVFVKEDDKLIFHRHPVAQSTDAIRGKVGYTRGLHVWQITWAMRQ--RGTHAVVGVATADAPLHSV---G 107 (212)
T ss_dssp TSEEEEEECTTEEEETTEEEEEEECCBTTEEEEEEESCCBCSSEEEEEEECCGGG--CTTCCEEEEECTTSCCEEE---S
T ss_pred cccChhhcCCceEEeCCCeEEEEECCCCCccceEEcCCCccCCeEEEEEEEeccc--CCCcEEEEEEcCCcccccc---C
Confidence 45554 4678999999986 44443 222345788999998773 4677775321 1344579997643221000 0
Q ss_pred CCCCCCCCCCCeeEEecccc--cccccee-eeeeeeccCCchhhh-hhccccCCccEEEEEEC-CCceEEEEEcCcceee
Q psy16632 91 YVCPDLTNKPGYWAKALAER--FADQETV-LFYYVIVQPGYWAKA-LAERFADQETVLFYYVT-AAGDVHFGINGEEKGV 165 (203)
Q Consensus 91 ~a~~dL~~~~~~W~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~gd~l~~~~~-~~G~l~~~vNG~~~G~ 165 (203)
. ...+-....+|.+..... ..++... ...| ... ........+++|++.++ ..|+|.|+.||+..|.
T Consensus 108 ~-~~~~G~~~~sw~~~~~~~~~~h~~~~~~~~~~--------~~~~~~~~~~~~~~~IGv~LD~e~G~lsFy~ng~~l~~ 178 (212)
T 2jk9_A 108 Y-TTLVGNNHESWGWDLGRNRLYHDGKNQPSKTY--------PAFLEPDETFIVPDSFLVALDMDDGTLSFIVDGQYMGV 178 (212)
T ss_dssp S-CCCTTSSTTEEEEETTTTEEEESTTTSCCEES--------STTSCTTCCCCCCSEEEEEEETTTTEEEEEETTEEEEE
T ss_pred c-ccccccCCCcEeeECCCCcEEECCcccCcccc--------CcccccCCcCCCCCEEEEEEECCCCEEEEEECCEEeEE
Confidence 0 011222357898864221 1111100 0000 000 00011257899999998 7899999999999999
Q ss_pred EeeccCCCCceEEEEecc-CCceEEEEe
Q psy16632 166 FFTGVETRGPLWAMFDIY-GNSTAIQLI 192 (203)
Q Consensus 166 ~~~~v~~~~pLwavvDvy-G~t~~V~lv 192 (203)
+++++. ++|||.+|-+. |.+ .|+|.
T Consensus 179 aF~~~~-~~~l~P~f~l~~g~~-~v~l~ 204 (212)
T 2jk9_A 179 AFRGLK-GKKLYPVVSAVWGHC-EIRMR 204 (212)
T ss_dssp EECCCT-TCCBEEEEEECCTTC-EEEEE
T ss_pred EeccCC-CCEEeeEEEEEcCCc-EEEEE
Confidence 998876 56999999984 655 36654
No 7
>2afj_A Gene rich cluster, C9 gene; beta sandwich, gene regulation; NMR {Mus musculus} SCOP: b.29.1.22
Probab=97.05 E-value=0.0073 Score=49.60 Aligned_cols=163 Identities=13% Similarity=0.130 Sum_probs=97.2
Q ss_pred ccccc-CCCCCEEEecCCeEEEec---CcCCceEEEeCCcCCCCC-EEEEEEEeecCCccceeEEeeeeeCCCCCCCCCC
Q psy16632 15 LYFHQ-VHGENVRVSRDGTVAKRY---ESFCKGVAFSSRPVKINE-KVYVKLLEISTNWSGVIRFGFTANDPAHLKYALP 89 (203)
Q Consensus 15 l~FH~-~~G~nI~Ls~~~~~A~R~---~sf~~giVFS~rPL~~gE-~f~v~I~~~~~~wsG~l~iGvT~~dP~~l~~~lP 89 (203)
+.+.+ ....++.|++|++.+++. ++|. .|.+..++..|. .+||+|... .-++...|||....-..-+.
T Consensus 41 ~tLDp~ta~~~L~lSed~~~v~~~~~~~~~~--~Vlg~~~f~sGrhYWEV~V~~~--~~~~~w~vGV~~~s~~~~r~--- 113 (226)
T 2afj_A 41 HGWNPKDCSENIDVKEGGLCFERRPVAQSTD--GVRGKRGYSRGLHAWEISWPLE--QRGTHAVVGVATALAPLQAD--- 113 (226)
T ss_dssp HSSCCSSSCCSSEEETTTTEEECSSCTTTSS--SEEECCCCCCSEEEEEEECCCC--SSSCCCEEEEEESSCCCSSC---
T ss_pred cEEccccCCCCEEEeCCCEEEEECCCCCCcC--eEEECCCccCCEEEEEEEEecc--CCCCCEEEEecCCccccccc---
Confidence 44555 567899999999888763 3443 788899998774 467777542 12345789997744321000
Q ss_pred CCCCCCCCCCCCeeEEecccc--cccccee-eeeeeeccCCchhhhhhccccCCccEEEEEEC-CCceEEEEEcCcceee
Q psy16632 90 RYVCPDLTNKPGYWAKALAER--FADQETV-LFYYVIVQPGYWAKALAERFADQETVLFYYVT-AAGDVHFGINGEEKGV 165 (203)
Q Consensus 90 ~~a~~dL~~~~~~W~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~gd~l~~~~~-~~G~l~~~vNG~~~G~ 165 (203)
.. ...+-....+|.+..... ..++... ...|. ..........+++|++.++ +.|+|.|+.||+..|.
T Consensus 114 ~~-~~~~G~~~~sw~~~~~~~~~~h~~~~~~~~~~~--------~~~~~~~~~~~~rIGV~LD~e~G~lSFy~ng~~l~~ 184 (226)
T 2afj_A 114 HY-AALLGSNSESWGWDIGRGKLYHQSKGLEAPQYP--------AGPQGEQLVVPERLLVVLDMEEGTLGYSIGGTYLGP 184 (226)
T ss_dssp SS-SCCCCCSCEEEEEEGGGTSTTSSSSCCSCSSSS--------CCSGGGGSCCSSCEEEEEETTTTEEEEESTTCSCST
T ss_pred cc-cccccCCCCcEEEEcCCCeEEECccccCccccc--------ccccCCcCCCCCEEEEEEECCCCEEEEEECCeEeEE
Confidence 00 011212347898864221 1121100 00010 0000012256899999998 7899999999999998
Q ss_pred EeeccCCCCceEEEEecc-CC-ceEEEEecC
Q psy16632 166 FFTGVETRGPLWAMFDIY-GN-STAIQLIDS 194 (203)
Q Consensus 166 ~~~~v~~~~pLwavvDvy-G~-t~~V~lv~~ 194 (203)
+++++. ++|||.+|-+. |. ...|...+.
T Consensus 185 aF~~~~-~~~L~P~f~l~~g~~~v~l~~~~g 214 (226)
T 2afj_A 185 AFRGLK-GRTLYPSVSAVWGQCQVRIRYMGE 214 (226)
T ss_dssp THHHHH-HHCCEEEEEECCTTSCCEEEEESC
T ss_pred EEEcCC-CCEEEEEEEcccCCCEEEEEEcCC
Confidence 887765 45999999984 64 344444443
No 8
>2vok_A 52 kDa RO protein; polymorphism, immune system, metal-binding, tripartite motif (TRIM) protein, SPRY systemic lupus erythematosus, zinc, B30.2; 1.30A {Mus musculus} PDB: 2vol_B* 2iwg_B*
Probab=95.97 E-value=0.47 Score=37.89 Aligned_cols=155 Identities=14% Similarity=0.209 Sum_probs=90.2
Q ss_pred CCccccc-CCCCCEEEecCCeEEEecC----------cCCc-eEEEeCCcCCCCC-EEEEEEEeecCCccceeEEeeeee
Q psy16632 13 PPLYFHQ-VHGENVRVSRDGTVAKRYE----------SFCK-GVAFSSRPVKINE-KVYVKLLEISTNWSGVIRFGFTAN 79 (203)
Q Consensus 13 ~~l~FH~-~~G~nI~Ls~~~~~A~R~~----------sf~~-giVFS~rPL~~gE-~f~v~I~~~~~~wsG~l~iGvT~~ 79 (203)
..+.+.+ .-..++.||+|++.+++.. .|.. ..|...+.+..|. .+||++.. ++.-.+||+..
T Consensus 9 ~~vtLDp~TA~~~L~lSed~~~v~~~~~~q~~p~~peRF~~~~~VLg~~~fsSGrHYWEVev~~-----~~~w~vGV~~~ 83 (188)
T 2vok_A 9 VHITLDRNTANSWLIISKDRRQVRMGDTHQNVSDNKERFSNYPMVLGAQRFSSGKMYWEVDVTQ-----KEAWDLGVCRD 83 (188)
T ss_dssp CCCCBCGGGSCTTEEECTTSCEEEECSSCCCCCCCTTSCCSSSEEEBSCCBSSSEEEEEEECTT-----CSCEEEEEEET
T ss_pred cceEECCccCCCCeEECCCCCEEEECCccCCCCCCccceeeeccccccCcccCCCeEEEEEecC-----CceEEEEEeeC
Confidence 4455665 4567999999999988742 2443 4788888887774 47887753 23457898764
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCeeEEeccccccccceeeeeeeeccCCchhhhhhccccCCccEEEEEEC-CCceEEEEE
Q psy16632 80 DPAHLKYALPRYVCPDLTNKPGYWAKALAERFADQETVLFYYVIVQPGYWAKALAERFADQETVLFYYVT-AAGDVHFGI 158 (203)
Q Consensus 80 dP~~l~~~lP~~a~~dL~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~l~~~~~-~~G~l~~~v 158 (203)
.-..-. .. .|....++|.+..... . |.+.... .....+.....+||+.++ +.|.|.|+-
T Consensus 84 si~Rkg-~~------~~~~~~~~W~l~~~~~----~-----y~~~~~~----~~~l~~~~~~~rVGVfLDye~G~lSFY~ 143 (188)
T 2vok_A 84 SVQRKG-QF------SLSPENGFWTIWLWQD----S-----YEAGTSP----QTTLHIQVPPCQIGIFVDYEAGVVSFYN 143 (188)
T ss_dssp TCCCSS-CC------CCSTTTTEEEEEEETT----E-----EEECSSS----CEEECCSSCCSEEEEEEETTTTEEEEEE
T ss_pred CcCCCC-cc------ccCCCCCEEEEEEECC----E-----EEEEeCC----ccCEecCCCCCEEEEEEEcCCCEEEEEE
Confidence 321100 11 1334568998864321 0 1111000 000012244678999998 779999884
Q ss_pred cCcce-eeEee--ccCCCCceEEEEeccCC-----ceEEEEec
Q psy16632 159 NGEEK-GVFFT--GVETRGPLWAMFDIYGN-----STAIQLID 193 (203)
Q Consensus 159 NG~~~-G~~~~--~v~~~~pLwavvDvyG~-----t~~V~lv~ 193 (203)
-.+. -.+.+ .+.=++|||++|-+... ...++|..
T Consensus 144 -v~~~~~~I~tF~~~~Fs~pL~P~F~~~~~~~~~~~~~l~i~~ 185 (188)
T 2vok_A 144 -ITDHGSLIYTFSECVFAGPLRPFFNVGFNYSGGNAAPLKLCP 185 (188)
T ss_dssp -TTTTTEEEEEECSCCCCSCEEEEEECCCCTTSCCCCCEEECC
T ss_pred -CCCCCeeeEEecCCCCCCCEEeEEEecccCCCCCCCCEEEeC
Confidence 3344 33322 22336799999998743 34577764
No 9
>3uv9_A TRIM5alpha, tripartite motif-containing protein 5; domain SWAP, antiretroviral, HIV capsid, ligase; 1.55A {Macaca mulatta}
Probab=95.77 E-value=0.19 Score=39.97 Aligned_cols=152 Identities=15% Similarity=0.202 Sum_probs=82.9
Q ss_pred CEEEecCCeEEEecCcCCceEEEeCCcCCCC-CEEEEEEEeecCCccceeEEeeeeeCCCCCCCCCCCCCCCCCCCCCCe
Q psy16632 24 NVRVSRDGTVAKRYESFCKGVAFSSRPVKIN-EKVYVKLLEISTNWSGVIRFGFTANDPAHLKYALPRYVCPDLTNKPGY 102 (203)
Q Consensus 24 nI~Ls~~~~~A~R~~sf~~giVFS~rPL~~g-E~f~v~I~~~~~~wsG~l~iGvT~~dP~~l~~~lP~~a~~dL~~~~~~ 102 (203)
++.||+|++.++.... .-|.....+..| -.+||++.. ++.-.+||.......-....... ..+....++
T Consensus 23 ~l~lSed~r~Vr~~~~---~~VLG~~~ftsGrHYWEVeV~~-----~~~W~vGV~~~~~~r~~~~~~~~--~~~~~~~g~ 92 (186)
T 3uv9_A 23 HAVIAEDKRQVSSRAG---TGVLGSQSITSGKHYWEVDVSK-----KSAWILGVCAGFQSDAMYNIEQN--ENYQPKYGY 92 (186)
T ss_dssp CCEECTTSSCEECCCS---SCEECSSCBCSSEEEEEEECTT-----CSCEEEEEESCSTTTTTTTHHHH--TCCCGGGTE
T ss_pred CceECCCCCEEeecCC---CcCcCCCCCCCCCEEEEEEEcC-----CCcEEEEEEEEEecccccccCCC--cccCCCCCE
Confidence 5789999988854332 237788888766 457888753 23346788543222110000000 113334579
Q ss_pred eEEeccccccccceeeeeeeeccCCchhh-----hhhccccCCccEEEEEEC-CCceEEEEEcCcceeeE-ee--ccCCC
Q psy16632 103 WAKALAERFADQETVLFYYVIVQPGYWAK-----ALAERFADQETVLFYYVT-AAGDVHFGINGEEKGVF-FT--GVETR 173 (203)
Q Consensus 103 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~gd~l~~~~~-~~G~l~~~vNG~~~G~~-~~--~v~~~ 173 (203)
|++...+... |.....+.... .....+...-.+|++.++ +.|.|.|+ |-.+.+.+ .+ ...=+
T Consensus 93 W~l~~~~~~~--------y~~~~~~~~~~~~~~~~~~l~~~~~p~rVGVfLDye~G~lSFY-nv~d~~~lI~tF~~~~Fs 163 (186)
T 3uv9_A 93 WVIGLQEGVK--------YSVFQDGSSHTPFAPFIVPLSVIICPDRVGVFVDYEACTVSFF-NITNHGFLIYKFSQCSFS 163 (186)
T ss_dssp EEEEEETTTE--------EEEEECCCTTSTTSCEEEECCCSSCCSEEEEEEETTTTEEEEE-ETTTTTEEEEEECSCCCS
T ss_pred EEEEECCCCE--------EEEEeCCCccccCCCccCcccccccCCEEEEEeecCCCEEEEE-eCCCCceEEEEeCCcCCC
Confidence 9886433110 11000000000 000112244578999998 77999987 55565533 22 33446
Q ss_pred CceEEEEeccCCceEEEEecC
Q psy16632 174 GPLWAMFDIYGNSTAIQLIDS 194 (203)
Q Consensus 174 ~pLwavvDvyG~t~~V~lv~~ 194 (203)
+|||.+|.+......++|..+
T Consensus 164 ~pL~P~F~~~~~~~plticpp 184 (186)
T 3uv9_A 164 KPVFPYLNPRKCTVPMTLCSP 184 (186)
T ss_dssp SCBEEEEECTTCCSCCEECCC
T ss_pred CCEEeEEECCCCCceEEEeCC
Confidence 799999999766666887654
No 10
>2fbe_A Predicted: similar to RET finger protein-like 1; dimer, jellyroll beta-sandwich fold, unknown function; 2.52A {Homo sapiens} SCOP: b.29.1.22
Probab=94.61 E-value=1.4 Score=35.39 Aligned_cols=156 Identities=10% Similarity=0.086 Sum_probs=90.3
Q ss_pred Cccccc-CCCCCEEEecCCeEEEecC----------cCCc-eEEEeCCcCCCCC-EEEEEEEeecCCccceeEEeeeeeC
Q psy16632 14 PLYFHQ-VHGENVRVSRDGTVAKRYE----------SFCK-GVAFSSRPVKINE-KVYVKLLEISTNWSGVIRFGFTAND 80 (203)
Q Consensus 14 ~l~FH~-~~G~nI~Ls~~~~~A~R~~----------sf~~-giVFS~rPL~~gE-~f~v~I~~~~~~wsG~l~iGvT~~d 80 (203)
.+.|.+ ....++.||+|++.+++.. .|.. ..|...+.+..|. .+||++.. ++.-.|||....
T Consensus 11 ~~tLDp~TA~~~L~lSed~~~v~~~~~~q~~p~~peRF~~~~~VLg~~~fsSGrHYWEVev~~-----~~~w~vGV~~~s 85 (201)
T 2fbe_A 11 DMTFDVDTANNYLIISEDLRSFRSGDLSQNRKEQAERFDTALCVLGTPRFTSGRHYWEVDVGT-----SQVWDVGVCKES 85 (201)
T ss_dssp CCCEETTTCCTTEEECTTSSEEEECSSCCCCCCCTTSCSSSCEEEESCCBSSSEEEEEEECTT-----CSEEEEEEEETT
T ss_pred eEEECcccCCCceEECCCCcEEEECCccCCCCCCccceeeccceecCccccCCceEEEEEeCC-----CCEEEEEEeeCc
Confidence 456665 5578999999999988742 2443 4788888887774 47887753 234678997643
Q ss_pred CCCCCCCCCCCCCCCCCCCCCeeEEeccccccccceeeeeeeeccCCchhhhhhccccCCccEEEEEEC-CCceEEEEEc
Q psy16632 81 PAHLKYALPRYVCPDLTNKPGYWAKALAERFADQETVLFYYVIVQPGYWAKALAERFADQETVLFYYVT-AAGDVHFGIN 159 (203)
Q Consensus 81 P~~l~~~lP~~a~~dL~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~l~~~~~-~~G~l~~~vN 159 (203)
-..-. .. .+....++|.+...... .|.+.. .. ...-.+.....+|++.++ +.|.|.|+-
T Consensus 86 i~Rkg-~~------~~~~~~g~W~l~~~~~~--------~y~~~~-~~---~~~l~~~~~~~rVGVfLDye~G~lSFY~- 145 (201)
T 2fbe_A 86 VNRQG-KI------ELSSEHGFLTVGCREGK--------VFAAST-VP---MTPLWVSPQLHRVGIFLDVGMRSIAFYN- 145 (201)
T ss_dssp SCCSS-CC------CCCTTTTEEEEEEETTT--------EEEECS-SS---CEEECCCTTCCEEEEEEETTTTEEEEEE-
T ss_pred cCCCC-cc------cccCCCCEEEEEEeCCC--------EEEEEc-CC---cccCccCCCCCEEEEEEEcCCCEEEEEe-
Confidence 21110 11 13334579988643211 011100 00 000012244578999998 779999884
Q ss_pred CcceeeEee--ccCCCCceEEEEecc----CCceEEEEecC
Q psy16632 160 GEEKGVFFT--GVETRGPLWAMFDIY----GNSTAIQLIDS 194 (203)
Q Consensus 160 G~~~G~~~~--~v~~~~pLwavvDvy----G~t~~V~lv~~ 194 (203)
-.++..+.+ ...-++|||.+|-+. |....++|...
T Consensus 146 v~~~~~i~tF~~~~Fs~pL~P~F~~~~~~~~~~~~l~ic~~ 186 (201)
T 2fbe_A 146 VSDGCHIYTFIEIPVCEPWRPFFAHKRGSQDDQSILSICSV 186 (201)
T ss_dssp TTTTEEEEEECSCCCSSCEEEEEEEECSSSSCCCCEEECCC
T ss_pred CCCCceeEEEcCCCCCCCEEeEEEecccCCCCCCCEEEeCC
Confidence 334444433 222367999999886 23336787653
No 11
>2wl1_A Pyrin, marenostrin; amyloidosis, polymorphism, cytoskeleton, actin-binding inflammatory response, metal-binding, signaling protein; 1.35A {Homo sapiens}
Probab=93.63 E-value=2.2 Score=33.90 Aligned_cols=155 Identities=14% Similarity=0.157 Sum_probs=88.5
Q ss_pred Cccccc-CCCCCEEEecCCeEEEecC----------cCCc-eEEEeCCcCCCCC-EEEEEEEeecCCccceeEEeeeeeC
Q psy16632 14 PLYFHQ-VHGENVRVSRDGTVAKRYE----------SFCK-GVAFSSRPVKINE-KVYVKLLEISTNWSGVIRFGFTAND 80 (203)
Q Consensus 14 ~l~FH~-~~G~nI~Ls~~~~~A~R~~----------sf~~-giVFS~rPL~~gE-~f~v~I~~~~~~wsG~l~iGvT~~d 80 (203)
.+.|.+ ....++.||+|++.+++.. .|.. ..|...+.+..|. .+||++.. ++.-.+||....
T Consensus 14 ~~tLDp~TA~~~L~lSed~~~v~~~~~~q~~p~~p~RF~~~~~VLg~~~fssGrHYWEVev~~-----~~~w~vGV~~~s 88 (191)
T 2wl1_A 14 NVILDAETAYPNLIFSDDLKSVRLGNKWERLPDGPQRFDSCIIVLGSPSFLSGRRYWEVEVGD-----KTAWILGACKTS 88 (191)
T ss_dssp CCEECTTTSCTTEEECTTSCEEEECCTTCCCCCCTTSCSSSCCEEEECCBCSSEEEEEEECTT-----CSCEEEEEEETT
T ss_pred eeEECCccCCCceEECCCCcEEEECCcCCCCCCCcccccccccccCcccccCCCEEEEEEeCC-----CCEEEEEEeeCC
Confidence 566666 5677999999999988742 2433 4678888887774 47887753 234678997643
Q ss_pred CCCCCCCCCCCCCCCCCCCCCeeEEeccccccccceeeeeeeeccCCchhhhhhccccCCccEEEEEEC-CCceEEEEEc
Q psy16632 81 PAHLKYALPRYVCPDLTNKPGYWAKALAERFADQETVLFYYVIVQPGYWAKALAERFADQETVLFYYVT-AAGDVHFGIN 159 (203)
Q Consensus 81 P~~l~~~lP~~a~~dL~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~l~~~~~-~~G~l~~~vN 159 (203)
-..-. .. .|....++|.+...... .|....... ..+ .+.....+||+.++ +.|.|.|+-
T Consensus 89 ~~Rkg-~~------~~~~~~~~W~l~~~~~~--------~y~~~~~~~--~~l--~~~~~~~rVGVfLDye~G~lSFY~- 148 (191)
T 2wl1_A 89 ISRKG-NM------TLSPENGYWVVIMMKEN--------EYQASSVPP--TRL--LIKEPPKRVGIFVDYRVGSISFYN- 148 (191)
T ss_dssp CCSSS-CC------CCCGGGTEEEEEEEETT--------EEEECCSSC--EEC--CCSSCCSEEEEEEETTTTEEEEEE-
T ss_pred cCCCC-cc------ccCCCCCEEEEEEeCCC--------EEEEEcCCC--ccC--ccccCCcEEEEEEEcCCCEEEEEE-
Confidence 22110 11 13334579988643210 111100000 000 11234578999998 779999884
Q ss_pred CcceeeEee--ccCCCCceEEEEeccCC-----ceEEEEec
Q psy16632 160 GEEKGVFFT--GVETRGPLWAMFDIYGN-----STAIQLID 193 (203)
Q Consensus 160 G~~~G~~~~--~v~~~~pLwavvDvyG~-----t~~V~lv~ 193 (203)
-.+...+.+ .+.-++|||++|-+... ...++|..
T Consensus 149 v~~~~~i~tF~~~~Fs~pl~P~F~~~~~~~~~~~~~l~i~~ 189 (191)
T 2wl1_A 149 VTARSHIYTFASCSFSGPLQPIFSPGTRDGGKNTAPLTICP 189 (191)
T ss_dssp TTTTEEEEEECCCCCCSCEEEEEECCCCGGGTSCSCEEEEC
T ss_pred CCCCcceEEeCCCCCCCCEEeEEEccccCCCCCcCCEEecC
Confidence 344444433 22336799999988632 23466654
No 12
>4b3n_A Maltose-binding periplasmic protein, tripartite motif-containing protein 5; sugar binding protein-ligase complex; HET: MAL MES; 3.30A {Escherichia coli} PDB: 2lm3_A
Probab=83.82 E-value=14 Score=33.89 Aligned_cols=152 Identities=16% Similarity=0.247 Sum_probs=76.4
Q ss_pred CEEEecCCeEEEec------------------CcCCc-eEEEeCCcCCCC-CEEEEEEEeecCCccceeEEeeeeeCCCC
Q psy16632 24 NVRVSRDGTVAKRY------------------ESFCK-GVAFSSRPVKIN-EKVYVKLLEISTNWSGVIRFGFTANDPAH 83 (203)
Q Consensus 24 nI~Ls~~~~~A~R~------------------~sf~~-giVFS~rPL~~g-E~f~v~I~~~~~~wsG~l~iGvT~~dP~~ 83 (203)
++.||+|++..++. ..|.. ..|.....+..| -.+||+|.. ...| .+||.......
T Consensus 421 ~l~~s~d~r~v~~~~~~~~~~~p~~~~~~~~~~rF~~~~~VLg~~~f~sGrhyWEV~v~~-~~~w----~~Gv~~~~~~~ 495 (602)
T 4b3n_A 421 HAVIAEDKRQVSSRNPQIMYQAPGTLFTFPSLTNFNYCTGVLGSQSITSGKHYWEVDVSK-KSAW----ILGVCAGFQSD 495 (602)
T ss_dssp SCEECTTSSEEECCCC--------------------CCCCEEESSCBSSSEEEEEEECTT-CSCE----EEEEECCCCTT
T ss_pred ceeEecCCCEEEECCccccccCCCccCCCCCcccCCCCCEeccCCCCCCEEEEEEEEECC-CeeE----EEEEeeccccc
Confidence 57799998887642 12332 357777777766 567888853 3456 57885432221
Q ss_pred CCCCCCCCCCCCCCCCCCeeEEeccccccccceeeeeeeeccCCc--hh-hh--hhccccCCccEEEEEEC-CCceEEEE
Q psy16632 84 LKYALPRYVCPDLTNKPGYWAKALAERFADQETVLFYYVIVQPGY--WA-KA--LAERFADQETVLFYYVT-AAGDVHFG 157 (203)
Q Consensus 84 l~~~lP~~a~~dL~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~--~~~~~~~~gd~l~~~~~-~~G~l~~~ 157 (203)
-....... -.+....++|++...+.. .|.....+. .. .. ..-.+...=.+||+.++ +.|+|.|+
T Consensus 496 ~~~~~~~~--~~~~~~~g~w~~~~~~~~--------~y~~~~~~~~~~~~~~~~~~l~~~~~~~rvgv~ld~~~g~~sFy 565 (602)
T 4b3n_A 496 AMYNIEQN--ENYQPKYGYWVIGLQEGV--------KYSVFQDGSSHTPFAPFIVPLSVIICPDRVGVFVDYEACTVSFF 565 (602)
T ss_dssp TSSTHHHH--CCCCGGGTEEEEEEETTT--------EEEEEECCCSSCCSSCEEEECCCSSCCSEEEEEEETTTTEEEEE
T ss_pred cccccCCC--cccCCCCcEEEEEEecCC--------eEEEEeCCCcccccCCcccccccCCCCCEEEEEEecCCCEEEEE
Confidence 10000000 012234589988643321 011110000 00 00 00011123357889998 77899987
Q ss_pred EcCcceee-Ee--eccCCCCceEEEEeccCCceEEEE
Q psy16632 158 INGEEKGV-FF--TGVETRGPLWAMFDIYGNSTAIQL 191 (203)
Q Consensus 158 vNG~~~G~-~~--~~v~~~~pLwavvDvyG~t~~V~l 191 (203)
|-.+++. +. +...-+.|||.+|-+-.....++|
T Consensus 566 -~~~~~~~~i~tf~~~~f~~~l~P~f~~~~~~~~l~i 601 (602)
T 4b3n_A 566 -NITNHGFLIYKFSQCSFSKPVFPYLNPRKCTVPMTL 601 (602)
T ss_dssp -ETTTTTEEEEEECSCCCCSCBEEEEECTTCSSCEEE
T ss_pred -eCCCCceeeEeCCCcCCCCCEeCeEECCCCCCceEe
Confidence 3345543 23 234446799999998533444555
No 13
>3kb5_A Tripartite motif-containing protein 72; B30.2, gustavus, SPRY, TRIM21, TRIM72, PRY, high resolution, Mg53; 1.50A {Homo sapiens}
Probab=83.40 E-value=15 Score=28.95 Aligned_cols=147 Identities=18% Similarity=0.191 Sum_probs=81.2
Q ss_pred Cccccc-CCCCCEEEecCCeEEEecC-----------cCCc-eEEEeCCcCCCCC-EEEEEEEeecCCccceeEEeeeee
Q psy16632 14 PLYFHQ-VHGENVRVSRDGTVAKRYE-----------SFCK-GVAFSSRPVKINE-KVYVKLLEISTNWSGVIRFGFTAN 79 (203)
Q Consensus 14 ~l~FH~-~~G~nI~Ls~~~~~A~R~~-----------sf~~-giVFS~rPL~~gE-~f~v~I~~~~~~wsG~l~iGvT~~ 79 (203)
.+.+-+ .-..++.||+|++.+++.. .|.. ..|.....+..|. .+||++... +.-.+||+..
T Consensus 13 ~vtLDp~TA~~~L~lSed~~~v~~~~~~~q~~p~~p~RF~~~~~VLg~~~fssGrhYWEVev~~~-----~~W~lGV~~~ 87 (193)
T 3kb5_A 13 ELTFDPSSAHPSLVVSSSGRRVECSEQKAPPAGEDPRQFDKAVAVVAHQQLSEGEHYWEVDVGDK-----PRWALGVIAA 87 (193)
T ss_dssp CCCBCTTTSCTTEEEETTTTEEEECCSCCCCCCSCTTSCSSSCEEEBSCCBCSSEEEEEEECTTC-----SSEEEEEEET
T ss_pred cEEECCCCCCCCEEECCCCCEEEECCcCCCCCCCCccccccccEEccCCcccCCCEEEEEEeCcC-----ceEEEEEeeC
Confidence 456665 4678899999999887732 2432 5788888887774 478877531 2347898764
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCeeEEeccccccccceeeeeeeeccCCchhhhhhccc-cCCccEEEEEEC-CCceEEEE
Q psy16632 80 DPAHLKYALPRYVCPDLTNKPGYWAKALAERFADQETVLFYYVIVQPGYWAKALAERF-ADQETVLFYYVT-AAGDVHFG 157 (203)
Q Consensus 80 dP~~l~~~lP~~a~~dL~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~gd~l~~~~~-~~G~l~~~ 157 (203)
.-..-. ... +....++|.+...... .|.+...... ...-.+ ...-.+||+.++ +.|.|.|+
T Consensus 88 s~~Rkg-~~~------~~~~~~~W~l~~~~~~--------~y~~~~~~~~--~~~l~~~~~~~~rVGVfLDye~G~lSFY 150 (193)
T 3kb5_A 88 EAPRRG-RLH------AVPSQGLWLLGLREGK--------ILEAHVEAKE--PRALRSPERRPTRIGLYLSFGDGVLSFY 150 (193)
T ss_dssp TSCCSS-SCC------CSGGGTEEEEEEETTT--------EEEECCSSSS--CEECCCCSSCCSEEEEEEETTTTEEEEE
T ss_pred CcCcCC-CcC------CCCCCCEEEEEEeCCC--------EEEEEeCCCc--cEEEeecCCCCCEEEEEEEcCCCEEEEE
Confidence 322211 111 2224579988643211 1111110000 000011 133467899998 77899876
Q ss_pred -EcCcc-eeeEeecc--CCCCceEEEEecc
Q psy16632 158 -INGEE-KGVFFTGV--ETRGPLWAMFDIY 183 (203)
Q Consensus 158 -vNG~~-~G~~~~~v--~~~~pLwavvDvy 183 (203)
+...+ +-.+.+ . .=++|||.+|.+.
T Consensus 151 ~v~~~~~~s~I~t-F~~~Ft~pl~P~F~~~ 179 (193)
T 3kb5_A 151 DASDADALVPLFA-FHERLPRPVYPFFDVC 179 (193)
T ss_dssp ECCSTTCCEEEEE-ECSCCCSCEEEEEECC
T ss_pred eCCCCCCceEEEE-eCCCCCCCeECEEEcc
Confidence 43211 222222 2 3357999999874
No 14
>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}
Probab=48.38 E-value=20 Score=24.70 Aligned_cols=26 Identities=12% Similarity=0.230 Sum_probs=21.0
Q ss_pred ceEEEeCCcC-CCCCEEEEEEEeecCC
Q psy16632 42 KGVAFSSRPV-KINEKVYVKLLEISTN 67 (203)
Q Consensus 42 ~giVFS~rPL-~~gE~f~v~I~~~~~~ 67 (203)
...+|++||+ ++||.+.+++.-.+..
T Consensus 3 ~~fi~tDr~iYrPGetV~~~~~~~~~~ 29 (102)
T 2p9r_A 3 LVFVQTDKSIYKPGQTVKFRVVSMDEN 29 (102)
T ss_dssp EEEEEESCSEECTTCEEEEEEEEECGG
T ss_pred eEEEECCCcccCCCCEEEEEEEEECCC
Confidence 4679999998 9999999998755433
No 15
>1pya_B Pyruvoyl-dependent histidine decarboxylase (L- histidine carboxylase); carboxy-lyase; 2.50A {Lactobacillus SP} SCOP: d.155.1.1 PDB: 1hq6_B 1ibu_B 1ibt_B 1ibv_B* 1ibw_B*
Probab=44.17 E-value=12 Score=30.51 Aligned_cols=48 Identities=21% Similarity=0.295 Sum_probs=38.7
Q ss_pred CCcccccCCCCCEEEecCCeEEEecCcCCceEEEeCCcCCCCCEEEEEEEeecCCccceeEEeee
Q psy16632 13 PPLYFHQVHGENVRVSRDGTVAKRYESFCKGVAFSSRPVKINEKVYVKLLEISTNWSGVIRFGFT 77 (203)
Q Consensus 13 ~~l~FH~~~G~nI~Ls~~~~~A~R~~sf~~giVFS~rPL~~gE~f~v~I~~~~~~wsG~l~iGvT 77 (203)
..-||++..|++|.=-+.+.+|+|.. -+||++.||-+-| |+. |.|.+.
T Consensus 57 ~~rRf~~~PGA~vicAnK~vtA~rPk--------~d~~~~~ge~ygV--------Ws~-IAisia 104 (229)
T 1pya_B 57 QDRRHYPAPGSFIVCANKGVTAERPK--------NDADMKPGQGYGV--------WSA-IAISFA 104 (229)
T ss_dssp SSBCSCBCTTCEEEEEEEEEEEEECS--------SCSCCCTTCCSEE--------EEE-EEEEEE
T ss_pred ccccCCCCCCceEEecccceeccCcc--------cccccccCcccee--------eee-eeeeec
Confidence 46799999999999999999999986 4689999987655 655 666653
No 16
>4doo_A Chalcone-flavanone isomerase family protein; chalcone-isomerase like fold, fatty-acid binding; HET: DAO; 1.90A {Arabidopsis thaliana}
Probab=36.67 E-value=35 Score=26.97 Aligned_cols=28 Identities=11% Similarity=0.162 Sum_probs=24.8
Q ss_pred CCccEEEEEECCCceEEEEEcCcceeeE
Q psy16632 139 DQETVLFYYVTAAGDVHFGINGEEKGVF 166 (203)
Q Consensus 139 ~~gd~l~~~~~~~G~l~~~vNG~~~G~~ 166 (203)
..|+.+.|...++|.+.+++||+..|..
T Consensus 141 ~kGd~i~~~~~p~~~l~~~~~g~~~g~I 168 (205)
T 4doo_A 141 PRNSTIDLTKDPGHVLSVAIEGNHVGSV 168 (205)
T ss_dssp CTTCEEEEEEETTTEEEEEETTEEEEEE
T ss_pred CCCCEEEEEEcCCCcEEEEECCeeeEEE
Confidence 5899999999999999999999887753
No 17
>2jv2_A Putative uncharacterized protein PH1500; AAA ATPase NC-domain-like, unknown function; NMR {Pyrococcus horikoshii}
Probab=36.01 E-value=28 Score=23.91 Aligned_cols=32 Identities=9% Similarity=0.323 Sum_probs=27.2
Q ss_pred EEeCCcCCCCCEEEEEEEeecCCccceeEEeeeeeCCC
Q psy16632 45 AFSSRPVKINEKVYVKLLEISTNWSGVIRFGFTANDPA 82 (203)
Q Consensus 45 VFS~rPL~~gE~f~v~I~~~~~~wsG~l~iGvT~~dP~ 82 (203)
-|-.||+..|+.+.+.+ ..+.+.|=|++..|+
T Consensus 36 ~L~grPV~~GD~I~i~~------~G~~i~F~Vv~t~P~ 67 (83)
T 2jv2_A 36 KLQGKTVRTGDVIGISI------LGKEVKFKVVQAYPS 67 (83)
T ss_dssp HHTTSEECTTCEEEEEE------TTEEEEEEEEEEESS
T ss_pred HHCCCCccCCCEEEEee------CCCEEEEEEEEecCc
Confidence 46679999999999877 238999999999997
No 18
>4fxk_A Complement C4 beta chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_A*
Probab=33.32 E-value=37 Score=30.87 Aligned_cols=28 Identities=18% Similarity=0.451 Sum_probs=22.0
Q ss_pred cCCceEEE--eCCcC-CCCCEEEEEEEeecC
Q psy16632 39 SFCKGVAF--SSRPV-KINEKVYVKLLEIST 66 (203)
Q Consensus 39 sf~~giVF--S~rPL-~~gE~f~v~I~~~~~ 66 (203)
+...+.+| ++||| +|||.+.+++.-.+.
T Consensus 116 ~~~~~~vFIqTDr~iYrPGqtV~~r~i~~d~ 146 (656)
T 4fxk_A 116 SSRRGHLFLQTDQPIYNPGQRVRYRVFALDQ 146 (656)
T ss_dssp CCCCSEEEEEESCSEECTTCEEEEEEEEECS
T ss_pred eccCccEEEECCCCCcCCCCEEEEEEEEECC
Confidence 34566778 99999 999999999865443
No 19
>1n0w_B Breast cancer type 2 susceptibility protein; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: j.97.1.1
Probab=29.76 E-value=9.7 Score=22.02 Aligned_cols=19 Identities=26% Similarity=0.574 Sum_probs=15.1
Q ss_pred CCCcccccCCCCCEEEecC
Q psy16632 12 LPPLYFHQVHGENVRVSRD 30 (203)
Q Consensus 12 ~~~l~FH~~~G~nI~Ls~~ 30 (203)
..-+.||...|++|.|+.+
T Consensus 3 ~~~lgFhTASGKkv~Iake 21 (35)
T 1n0w_B 3 PTLLGFHTASGKKVKIAKE 21 (35)
T ss_dssp CGGGSCEETTSCBCCCCHH
T ss_pred ceeeeeeecCCcEEEehHH
Confidence 3457999999999988643
No 20
>4a0t_A Tail fiber protein; viral protein, caudovirales, podoviridae, beta-helix, beta-S; HET: 1PE; 1.90A {Enterobacteria phage T7} PDB: 4a0u_A
Probab=29.40 E-value=32 Score=27.13 Aligned_cols=28 Identities=32% Similarity=0.552 Sum_probs=22.1
Q ss_pred CCCCCCCccccc-CCCCCEEEecCCeEEE
Q psy16632 8 GTNNLPPLYFHQ-VHGENVRVSRDGTVAK 35 (203)
Q Consensus 8 ~~~~~~~l~FH~-~~G~nI~Ls~~~~~A~ 35 (203)
+|.+-.+-.||. +||.+++|..|-.+..
T Consensus 75 gsdnnndctfhsyv~gt~ltlk~dyavvn 103 (227)
T 4a0t_A 75 GSDNNNDCTFHSYVHGTTLTLKQDYAVVN 103 (227)
T ss_dssp CSSSCCCEEEEETTTTEEEEECSSEEEES
T ss_pred cCCCCCcceEEEEEecceeeeccchheee
Confidence 455677889998 7999999998866553
No 21
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A
Probab=27.40 E-value=26 Score=31.14 Aligned_cols=57 Identities=9% Similarity=0.209 Sum_probs=35.6
Q ss_pred CCCcccccCCCCCEEEecCCeEEEe---cCcC--CceEEEeCCcCCCCCEEEEEEEeecCCcc
Q psy16632 12 LPPLYFHQVHGENVRVSRDGTVAKR---YESF--CKGVAFSSRPVKINEKVYVKLLEISTNWS 69 (203)
Q Consensus 12 ~~~l~FH~~~G~nI~Ls~~~~~A~R---~~sf--~~giVFS~rPL~~gE~f~v~I~~~~~~ws 69 (203)
..+.++-...-.|+++-+-.-.+.. .++. +.|+. |..||.|||.-+|+|+-.+..|.
T Consensus 311 ~~pvrlgeF~tA~vrFlnp~v~~~~~~~p~~l~a~~GL~-s~~pI~PGETrt~~V~a~da~We 372 (419)
T 3rfr_A 311 SQPVRLGEYTAAGLRFLNPTVFTQKPDFPDYLLADRGLS-NDDVIAPGESKEIVVKIQDARWD 372 (419)
T ss_dssp SSCBEEEEEECSSCEEECTTTCSSCCCCCTTTEESCCCC-CCCCBCTTCEEEEEEEEECHHHH
T ss_pred CCceEEeeEEEccEEEeCcccccCCCCCchhhhhccCCC-CCCCcCCCcceEEEEEeehHHHH
Confidence 3455555555566665543221111 0122 45788 88899999999999998888774
No 22
>3uep_A YSCQ-C, type III secretion protein; cytosol, protein transport; 2.25A {Yersinia pseudotuberculosis}
Probab=21.62 E-value=96 Score=21.56 Aligned_cols=28 Identities=18% Similarity=0.248 Sum_probs=23.5
Q ss_pred cCCccEEEEEECCCceEEEEEcCcceee
Q psy16632 138 ADQETVLFYYVTAAGDVHFGINGEEKGV 165 (203)
Q Consensus 138 ~~~gd~l~~~~~~~G~l~~~vNG~~~G~ 165 (203)
...||+|-+-...+..+.++|||...+.
T Consensus 40 L~~GdVI~Ld~~~~~~v~i~vng~~i~~ 67 (96)
T 3uep_A 40 LEPGSLIDLTTPVDGEVRLLANGRLLGH 67 (96)
T ss_dssp CCTTCEEEEEEESSCEEEEEETTEEEEE
T ss_pred CCCCCEEEeCCCCCCcEEEEECCEEEEE
Confidence 3889999888778899999999987553
Done!