RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16632
(203 letters)
>2yue_A Protein neuralized; structure genomics, NEUZ(NHR) domain,
structural genomics, NPPSFA; NMR {Drosophila
melanogaster}
Length = 168
Score = 211 bits (538), Expect = 1e-70
Identities = 95/188 (50%), Positives = 128/188 (68%), Gaps = 26/188 (13%)
Query: 8 GTNNLPPLYFHQVHGENVRVSRDGTVAKRYESFCKGVAFSSRPVKINEKVYVKLLEISTN 67
+ + PL FH VHG+N+R+SRDGT+A+R+ESFC+ + FS+RPV+INE++ VK EIS N
Sbjct: 2 SSGSSGPLQFHSVHGDNIRISRDGTLARRFESFCRAITFSARPVRINERICVKFAEISNN 61
Query: 68 WSGVIRFGFTANDPAHLKYALPRYVCPDLTNKPGYWAKALAERFADQETVLFYYVIVQPG 127
W+G IRFGFT+NDP L+ LP+Y CPDLTN +PG
Sbjct: 62 WNGGIRFGFTSNDPVTLEGTLPKYACPDLTN--------------------------RPG 95
Query: 128 YWAKALAERFADQETVLFYYVTAAGDVHFGINGEEKGVFFTGVETRGPLWAMFDIYGNST 187
+WAKAL E++ +++ +L+YYV AGDV +GIN EEKGV TG++TR LW + DIYGN T
Sbjct: 96 FWAKALHEQYCEKDNILYYYVNGAGDVIYGINNEEKGVILTGIDTRSLLWTVIDIYGNCT 155
Query: 188 AIQLIDSR 195
I+ +DSR
Sbjct: 156 GIEFLDSR 163
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 170
Score = 172 bits (437), Expect = 3e-55
Identities = 45/182 (24%), Positives = 70/182 (38%), Gaps = 20/182 (10%)
Query: 14 PLYFHQVHGENVRVSRDGTVAKRYE---SFCKGVAFSSRPVKINEKVYVKLLEISTNWSG 70
H G V +S G A+R + F G+ S P++ V++ +WSG
Sbjct: 6 SGELHPRTGRLVSLSACGRTARRQQPGQEFNHGLVLSREPLRDGRVFTVRIDRKVNSWSG 65
Query: 71 VIRFGFTANDPAHLKYALPRYVCPDLTNKPGYWAKALAERFADQETVLFYYVIVQPGYWA 130
I G TA DP+ L + K G W + D +VL Y
Sbjct: 66 SIEIGVTALDPSVLDFP-----SSATGLKGGSWVVSGCSVLRDGRSVLEEY--------- 111
Query: 131 KALAERFADQETVLFYYVTAAGDVHFGINGEEKGVFFTGVETRGPLWAMFDIYGNSTAIQ 190
+ + T AG++ +NG + GV TG+ +WA+ D+YG T I
Sbjct: 112 -GQDLDQLGEGDRVGVERTVAGELRLWVNGRDCGVAATGLPP--RVWAVVDLYGKCTQIT 168
Query: 191 LI 192
++
Sbjct: 169 VL 170
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.3 bits (86), Expect = 0.003
Identities = 25/192 (13%), Positives = 56/192 (29%), Gaps = 59/192 (30%)
Query: 6 NSGTNNL---PP--LYFHQVHGENVRVSRDGTVAKRYESFCKGVAFSSRPVKI------- 53
N N + PP LY + + ++ + FS R +K
Sbjct: 372 NGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSR--------IPFSERKLKFSNRFLPV 423
Query: 54 ------------NEKVYVKLLEISTNWSG------VIRFGFTANDPAHLKYALPRYVCPD 95
++ + L++ + +++ V F +D L ++ +
Sbjct: 424 ASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDT-FDGSDLRVLSGSISERIVDC 482
Query: 96 LTNKPGYWAKALAERFADQETVLFYYVIV-QPGYWAK--ALAERFAD---QETVLFYYVT 149
+ P W + T +++ PG + L R D ++
Sbjct: 483 IIRLPVKWETTT----QFKAT----HILDFGPGGASGLGVLTHRNKDGTGVRVIV----- 529
Query: 150 AAGDVHFGINGE 161
AG + + +
Sbjct: 530 -AGTLDINPDDD 540
Score = 28.9 bits (64), Expect = 1.6
Identities = 19/119 (15%), Positives = 35/119 (29%), Gaps = 27/119 (22%)
Query: 45 AFSSRPVKINE-KVYVKLLEISTN-WSG--VIRFGFTANDPAHLKYALPRYVCPD-LTNK 99
A+S+RP+ ++ + LL + T + ++ F P + D T
Sbjct: 3 AYSTRPLTLSHGSLEHVLL-VPTASFFIASQLQEQFNKILPE----PTEGFAADDEPTTP 57
Query: 100 PGYWAKAL---AERFADQETVLFYYVIVQPGYWAKALAERFADQETVLFYYVTAAGDVH 155
K L + + F V+ F + L D+H
Sbjct: 58 AELVGKFLGYVSSLVEPSKVGQFDQVL-------NLCLTEF--ENCYL-----EGNDIH 102
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.034
Identities = 14/55 (25%), Positives = 17/55 (30%), Gaps = 32/55 (58%)
Query: 55 EKVYVKLLEISTNWSGVIRFGFTANDPAHLK-YALPRYVCPDLTNKPGYWAKALA 108
EK +K L+ S LK YA D + P ALA
Sbjct: 18 EKQALKKLQAS------------------LKLYA------DD--SAP-----ALA 41
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.2 bits (67), Expect = 0.54
Identities = 24/195 (12%), Positives = 44/195 (22%), Gaps = 92/195 (47%)
Query: 16 YFHQVHGENVRVSRDGTVA--------KRYESFCKGVAFSSRP--VKINEKVYVKLLEIS 65
+ V+ + + + ++ K ++ F P I + +
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL---SVF---PPSAHIPTILLSLI---- 395
Query: 66 TNWSGVI--------------------RFGFT--------------ANDPA-HLK----Y 86
W VI T N+ A H Y
Sbjct: 396 --WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY 453
Query: 87 ALPRYVCPDLTNKP---GYWAKALAERFADQETVLFYYVIVQPGYWAKAL--AERFADQE 141
+P+ D P Y+ + ++ G+ K + ER
Sbjct: 454 NIPKTFDSDDLIPPYLDQYF---------------YSHI----GHHLKNIEHPERMTLFR 494
Query: 142 TVLFYYVTAAGDVHF 156
V D F
Sbjct: 495 MVFL-------DFRF 502
>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A
{Populus trichocarpa x populusdeltoides} PDB: 2p5r_A
Length = 170
Score = 27.2 bits (61), Expect = 3.1
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 8/39 (20%)
Query: 27 VSRDGTVAKRYESFCKGVAFSSRPVKINEKVYVKLLEIS 65
V++DG V RY ++ P+ + E+ +LLEIS
Sbjct: 140 VNKDGQVVDRYYP-------TTSPLSL-ERDIKQLLEIS 170
>2wvx_A Mannosidase, putative alpha-1,2-mannosidase; glycoside hydrolase
family 92, GH92, hydrolase, BT3990; HET: MSE; 1.90A
{Bacteroides thetaiotaomicron} PDB: 2wvz_A* 2ww0_A*
2ww1_A* 2ww3_A* 2wvx_B* 2wzs_A*
Length = 744
Score = 27.3 bits (61), Expect = 4.1
Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 14/67 (20%)
Query: 65 STNWSGVIRFGFTANDPAHLKYALPRYVCPDLTNKPGYWAKALAERFADQETVLFYYVIV 124
T + + RF F ND +++ D +K Y + ++ ++ Y
Sbjct: 123 PTERAVLFRFTFPENDHSYVVV--------DAFDKGSYI-----KIIPEENKIIG-YTTR 168
Query: 125 QPGYWAK 131
G +
Sbjct: 169 NSGGVPE 175
>1itw_A Isocitrate dehydrogenase; greece KEY motif, oxidoreductase; HET:
ICT; 1.95A {Azotobacter vinelandii} SCOP: c.77.1.2 PDB:
1j1w_A*
Length = 741
Score = 27.4 bits (60), Expect = 4.5
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 10/40 (25%)
Query: 102 YWAKALAERFADQETVLFYYVIVQPGYWAKALAERFADQE 141
YWA+ALA + D+E + +A+ D E
Sbjct: 666 YWAQALAAQTEDKELQAQF----------TGIAKALTDNE 695
>3f6y_A ADP-ribosyl cyclase 1; calcium loaded structure, active site
closure, inhibitory conformation, alternative splicing,
diabetes mellitus; 1.45A {Homo sapiens} PDB: 2o3s_A*
3dzh_A* 2i67_A* 2pgj_A* 3dzf_A* 2i66_A* 3dzg_A* 3dzi_A*
3dzk_A* 3i9m_A* 3i9n_A* 2o3t_A* 2o3q_A* 2i65_A* 2o3u_A*
2pgl_A* 2o3r_A* 2hct_A* 3dzj_A* 3raj_A ...
Length = 262
Score = 26.9 bits (59), Expect = 4.7
Identities = 14/74 (18%), Positives = 22/74 (29%), Gaps = 24/74 (32%)
Query: 128 YWAKALAERFADQETVLFYYVTAAGDVHFGINGEEKGVF-----FTGVE---------TR 173
+W + RFA+ A VH ++G +F F VE
Sbjct: 150 FWKTV-SRRFAEA---------ACDVVHVMLDGSRSKIFDKDSTFGSVEVHNLQPEKVQT 199
Query: 174 GPLWAMFDIYGNST 187
W + +S
Sbjct: 200 LEAWVIHGGREDSR 213
>2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH, oxidoreductase;
1.75A {Corynebacterium glutamicum} PDB: 3mbc_A*
Length = 738
Score = 27.0 bits (59), Expect = 5.0
Identities = 7/40 (17%), Positives = 12/40 (30%), Gaps = 10/40 (25%)
Query: 102 YWAKALAERFADQETVLFYYVIVQPGYWAKALAERFADQE 141
+WA LA + D + + +AE
Sbjct: 662 FWADELAAQTEDADLAATF----------APVAEALNTGA 691
>3p5s_A CD38 molecule; cyclic ADP ribose, ECTO-ADP-ribosyl cyclase,
glycosida hydrolase; HET: NAG AVU; 1.95A {Bos taurus}
Length = 278
Score = 26.2 bits (57), Expect = 8.9
Identities = 15/72 (20%), Positives = 22/72 (30%), Gaps = 22/72 (30%)
Query: 128 YWAKALAERFADQETVLFYYVTAAGDVHFGINGEEKGVF-----FTGVE-------TRGP 175
+W +ERFA+ A V +NG + F F VE
Sbjct: 180 FWEVL-SERFAES---------ACNTVRVVLNGSLENAFDSMSIFGRVEAPNLRPQVELE 229
Query: 176 LWAMFDIYGNST 187
W + D +
Sbjct: 230 AWLVHDTGKPPS 241
>2afj_A Gene rich cluster, C9 gene; beta sandwich, gene regulation; NMR
{Mus musculus} SCOP: b.29.1.22
Length = 226
Score = 25.9 bits (56), Expect = 9.8
Identities = 25/173 (14%), Positives = 46/173 (26%), Gaps = 13/173 (7%)
Query: 22 GENVRVSRDGTVAKRYE-SFCKGVAFSSRPVKINEKVY-VKLLEISTNWSGVIRFGFTAN 79
EN+ V G +R + R + + V+ TA
Sbjct: 49 SENIDVKEGGLCFERRPVAQSTDGVRGKRGYSRGLHAWEISWPLEQRGTHAVVGVA-TAL 107
Query: 80 DPAHLKYALPRYVCPDLTNKPGYWAKALAERFADQETVLFYYVIVQPGYWAKALAERFAD 139
P G +++ + + P Y A E+
Sbjct: 108 APLQ---------ADHYAALLGSNSESWGWDIGRGKLYHQSKGLEAPQYPAGPQGEQLVV 158
Query: 140 QETVLFYYVTAAGDVHFGINGEEKGVFFTGVETRGPLWAMFDIYGNSTAIQLI 192
E +L G + + I G G F G++ R L+ +++
Sbjct: 159 PERLLVVLDMEEGTLGYSIGGTYLGPAFRGLKGR-TLYPSVSAVWGQCQVRIR 210
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.426
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,262,147
Number of extensions: 194931
Number of successful extensions: 377
Number of sequences better than 10.0: 1
Number of HSP's gapped: 368
Number of HSP's successfully gapped: 24
Length of query: 203
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 114
Effective length of database: 4,216,824
Effective search space: 480717936
Effective search space used: 480717936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.4 bits)