RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16632
(203 letters)
>d2afja1 b.29.1.22 (A:12-224) SPRY domain-containing SOCS box
protein 2 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 213
Score = 34.8 bits (79), Expect = 0.003
Identities = 25/170 (14%), Positives = 45/170 (26%), Gaps = 14/170 (8%)
Query: 21 HGENVRVSRDG-TVAKRYESFCKGVAFSSRPVKINEKVY--VKLLEISTNWSGVIRFGFT 77
EN+ V G +R + R + V+ T
Sbjct: 42 CSENIDVKEGGLCFERRPVAQSTDGVRGKRGYS-RGLHAWEISWPLEQRGTHAVVGVA-T 99
Query: 78 ANDPAHLKYALPRYVCPDLTNKPGYWAKALAERFADQETVLFYYVIVQPGYWAKALAERF 137
A P G +++ + + P Y A E+
Sbjct: 100 ALAPLQ---------ADHYAALLGSNSESWGWDIGRGKLYHQSKGLEAPQYPAGPQGEQL 150
Query: 138 ADQETVLFYYVTAAGDVHFGINGEEKGVFFTGVETRGPLWAMFDIYGNST 187
E +L G + + I G G F G++ R ++ ++G
Sbjct: 151 VVPERLLVVLDMEEGTLGYSIGGTYLGPAFRGLKGRTLYPSVSAVWGQCQ 200
>d2fnja1 b.29.1.22 (A:35-251) LD34464p {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 217
Score = 31.7 bits (71), Expect = 0.037
Identities = 18/169 (10%), Positives = 43/169 (25%), Gaps = 12/169 (7%)
Query: 21 HGENVRVSRDGTVAKRYESFCKG--VAFSSRPVKINEKVYVKLLEISTNWSGVIRFGFTA 78
N+ V D + + + ++ + G
Sbjct: 31 RSLNIFVKEDDKLTFHRHPVAQSTDCIRGKVGLT-KGLHIWEIYWPTRQRGTHAVVGVCT 89
Query: 79 NDPAHLKYALPRYVCPDLTNKPGYWAKALAERFADQETVLFYYVIVQPGYWAKALAERFA 138
D V + + + + Y I++ E F
Sbjct: 90 ADAPLHSVGYQSLVGSTEQSWGWDLGRNKLYHDSKNCAGVTYPAILKND-------EAFL 142
Query: 139 DQETVLFYYVTAAGDVHFGINGEEKGVFFTGVETRGPLWAMF-DIYGNS 186
+ L G + F ++ + G+ F G+ L+ + ++G+
Sbjct: 143 VPDKFLVALDMDEGTLSFIVDQQYLGIAFRGL-RGKKLYPIVSAVWGHC 190
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1
ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 276
Score = 28.6 bits (64), Expect = 0.55
Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 16/61 (26%)
Query: 77 TANDPAHLKYALPRYVCPDLTNKPGYWAKALAERFADQET--VLFYYVIVQPGYWAKALA 134
N+P + + +AE F DQE VL + I + +A +
Sbjct: 140 QMNEPPGARARVALTGL------------TVAEYFRDQEGQDVLLF--IDNIFRFTQAGS 185
Query: 135 E 135
E
Sbjct: 186 E 186
>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1
ATP synthase {Cow (Bos taurus) [TaxId: 9913]}
Length = 285
Score = 26.7 bits (59), Expect = 2.2
Identities = 14/60 (23%), Positives = 20/60 (33%), Gaps = 15/60 (25%)
Query: 77 TANDPAHLKYALPRYVCPDLTNKPGYWAKALAERFADQET-VLFYYVIVQPGYWAKALAE 135
TA+D A L+Y P C ++ E F D L + A A +
Sbjct: 141 TASDAAPLQYLAPYSGC------------SMGEYFRDNGKHALI--IYDDLSKQAVAYRQ 186
>d2ef1a1 c.23.14.3 (A:45-291) ADP ribosyl cyclase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 247
Score = 26.3 bits (58), Expect = 2.3
Identities = 15/73 (20%), Positives = 22/73 (30%), Gaps = 24/73 (32%)
Query: 128 YWAKALAERFADQETVLFYYVTAAGDVHFGINGEEKGVF-----FTGVE---------TR 173
+W + RFA+ A VH +NG +F F VE
Sbjct: 144 FWKTV-SRRFAEA---------ACDVVHVMLNGSRSKIFDKNSTFGSVEVHNLQPEKVQT 193
Query: 174 GPLWAMFDIYGNS 186
W + +S
Sbjct: 194 LEAWVIHGGREDS 206
>d1itwa_ c.77.1.2 (A:) Monomeric isocitrate dehydrogenase
{Azotobacter vinelandii [TaxId: 354]}
Length = 740
Score = 25.5 bits (56), Expect = 6.5
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 102 YWAKALAERFADQE 115
YWA+ALA + D+E
Sbjct: 665 YWAQALAAQTEDKE 678
Score = 25.5 bits (56), Expect = 6.5
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 128 YWAKALAERFADQE 141
YWA+ALA + D+E
Sbjct: 665 YWAQALAAQTEDKE 678
>d2o1qa1 b.82.1.21 (A:1-144) Putative acetyl/propionyl-CoA
carboxylase subunit alpha Mpe_A3659 {Rubrivivax
gelatinosus [TaxId: 28068]}
Length = 144
Score = 24.6 bits (53), Expect = 7.2
Identities = 9/44 (20%), Positives = 14/44 (31%), Gaps = 3/44 (6%)
Query: 146 YYVTAAGDVHFGINGEEKGVFFTGVETRGPLWAMFDIYGNSTAI 189
Y +A H F+ + GPL G+ A+
Sbjct: 92 YGYESANARHDKTEFPVASEFY--MSFLGPL-TFVKPDGSPIAV 132
>d1ixha_ c.94.1.1 (A:) Phosphate-binding protein {Escherichia coli
[TaxId: 562]}
Length = 321
Score = 24.8 bits (53), Expect = 7.3
Identities = 12/85 (14%), Positives = 23/85 (27%), Gaps = 10/85 (11%)
Query: 7 SGTNNLPPLY------FHQVHGENVRVSRDGTVAKRYESFCKGV---AFSSRPVKINEKV 57
+G P+Y + + G V G+ + S P+ +
Sbjct: 7 AGATFPAPVYAKWADTYQKETGNKVNYQGIGSSGGV-KQIIANTVDFGASDAPLSDEKLA 65
Query: 58 YVKLLEISTNWSGVIRFGFTANDPA 82
L + T GV+ +
Sbjct: 66 QEGLFQFPTVIGGVVLAVNIPGLKS 90
>d3bbda1 c.116.1.6 (A:2-205) Ribosome biogenesis protein NEP1
{Methanococcus jannaschii [TaxId: 2190]}
Length = 204
Score = 24.4 bits (53), Expect = 9.2
Identities = 11/85 (12%), Positives = 27/85 (31%), Gaps = 6/85 (7%)
Query: 15 LYFHQVHGENVRVSRDGTVAKRYESFCKGVA--FSSRPVKINEKVYVKLLEISTNWSGVI 72
+Y H + ++++ + + + Y F + + + + K LE N
Sbjct: 77 IYIHTYDDKVLKINPETRLPRNYFRFLGVMEKVLKGERNHLIK-MEEKTLEDLLNEINAK 135
Query: 73 RFGFTANDPAHLKYALPRYVCPDLT 97
+ K P+ + T
Sbjct: 136 KIAIMTKTG---KLTHPKLLKEYDT 157
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.426
Gapped
Lambda K H
0.267 0.0642 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 795,127
Number of extensions: 36885
Number of successful extensions: 68
Number of sequences better than 10.0: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 11
Length of query: 203
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 122
Effective length of database: 1,295,466
Effective search space: 158046852
Effective search space used: 158046852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.6 bits)