BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16633
(540 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|156552886|ref|XP_001600943.1| PREDICTED: probable ATP-dependent RNA helicase DDX56 [Nasonia
vitripennis]
Length = 555
Score = 645 bits (1664), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/501 (62%), Positives = 387/501 (77%), Gaps = 43/501 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AIAKLGWLEPTLIQE+ IPLIL KDVLVRARTGSGKTGAFA+P++QKI++ K+T Q
Sbjct: 32 LKAIAKLGWLEPTLIQEKTIPLILDGKDVLVRARTGSGKTGAFAVPLVQKILSNKETQQH 91
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
Q+T L+L+PSKELC Q+H+ LT KCSR+V+C+DIS QV++SVQ+PLL E PDIV+A
Sbjct: 92 QQTTGLILAPSKELCKQIHEVFVNLTTKCSREVRCLDISPQVELSVQKPLLAENPDIVIA 151
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP RAL HLKAK L++K SLE +IIDEADL+FSFGYE+++K +L +LP +YQAILASATL
Sbjct: 152 TPGRALQHLKAKNLNVKKSLETLIIDEADLIFSFGYEEEIKTLLAYLPTVYQAILASATL 211
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
SEDVLSLK L+L NP ILKLEEP +AP SQLAHY + A+E++KA ILY LLKL+L++GK
Sbjct: 212 SEDVLSLKKLVLHNPAILKLEEPPLAPPSQLAHYTLAAEENDKAAILYALLKLHLIRGKC 271
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
IIFVNTVD+CYKLKL+LEQF I TCVLNSELPA +RC AV QFN G YD+IIASDEKALE
Sbjct: 272 IIFVNTVDRCYKLKLFLEQFGIPTCVLNSELPASSRCRAVTQFNSGTYDIIIASDEKALE 331
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
P + KR++DKESGV+RGIDFQFVSNVINFDFPLDI YIHRAGRTARGKNQGTA
Sbjct: 332 EPHVMKQKRGKRRKDKESGVARGIDFQFVSNVINFDFPLDINAYIHRAGRTARGKNQGTA 391
Query: 390 LSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGF 449
LSFV++RE+ ++ V E L + +++ + K YQF L+EV+GF
Sbjct: 392 -----------------LSFVAIRERPMLEQVEEQLKKDYGQEN-LFKTYQFKLNEVEGF 433
Query: 450 EYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKALYTVRIQ 484
YR++DAW++ +YFEDNP DL++LR DKAL+TVR+Q
Sbjct: 434 RYRSRDAWKAVTRIAVREARLKEIKQEVLTCDKLKSYFEDNPRDLQSLRQDKALHTVRLQ 493
Query: 485 SHLADVPDYIVPPALKKLARI 505
+HL DVP+YIVP +LK +A I
Sbjct: 494 AHLKDVPEYIVPASLKSMANI 514
>gi|270002128|gb|EEZ98575.1| hypothetical protein TcasGA2_TC001089 [Tribolium castaneum]
Length = 550
Score = 637 bits (1642), Expect = e-180, Method: Compositional matrix adjust.
Identities = 322/506 (63%), Positives = 395/506 (78%), Gaps = 50/506 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AIAKLGW PTLIQERAIPL+L+ KDVLVRARTGSGKT AF IP+IQKI+ LK+TA+
Sbjct: 22 LKAIAKLGWQTPTLIQERAIPLLLEGKDVLVRARTGSGKTAAFTIPVIQKILTLKKTAKH 81
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
QE KAL+L+PSKELC+Q+ I+ELT+KCSR+++CVD++ QV++SVQ+PLLVE+PDIVV
Sbjct: 82 QEIKALILAPSKELCHQICGVIKELTVKCSREIRCVDVAPQVELSVQKPLLVEQPDIVVG 141
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H+KA +DLK+S+E+++IDEADLVFSFGYE ++K +L+ LP +YQAILASATL
Sbjct: 142 TPTRVLKHIKAGYMDLKTSMELLVIDEADLVFSFGYESEVKELLERLPSIYQAILASATL 201
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
SEDV +LK L+L NPVILKLEEP IAP SQL+HYH++A+E +KATILY LLKL+L++GKT
Sbjct: 202 SEDVKNLKSLVLHNPVILKLEEPEIAPASQLSHYHLMAEEMDKATILYALLKLHLIRGKT 261
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
IIFVNTVDKCYK+KLYLEQF I TCVLNSELPAK RCH+V QFNQG+YD I+ASDEKALE
Sbjct: 262 IIFVNTVDKCYKIKLYLEQFGIPTCVLNSELPAKIRCHSVNQFNQGIYDTIVASDEKALE 321
Query: 330 TPQINSTNN-----RKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384
P + N+ KRK+DKESGVSRGIDFQ V+NVINFDFPLD+Q Y+HRAGRTARG
Sbjct: 322 QP--GNPNDPELKKSKRKKDKESGVSRGIDFQCVANVINFDFPLDVQSYVHRAGRTARGN 379
Query: 385 NQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLD 444
NQG+ LS FVS+RE+ L+ V + ++ +D I K YQF LD
Sbjct: 380 NQGSVLS-----------------FVSIREKPLLEQVETHFKSD-QDDVSIFKSYQFKLD 421
Query: 445 EVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKALY 479
EV+ F+YRAKDAWR+ +YFEDNPTDL+ LRHDKAL+
Sbjct: 422 EVESFKYRAKDAWRAVTRIAVREARLKEIKQEIFNCQKLKSYFEDNPTDLQVLRHDKALH 481
Query: 480 TVRIQSHLADVPDYIVPPALKKLARI 505
TV+IQ HL+DVP+YIVPP LK +A +
Sbjct: 482 TVKIQQHLSDVPEYIVPPTLKGIASL 507
>gi|91077434|ref|XP_966623.1| PREDICTED: similar to ATP-dependent RNA helicase DBP9 [Tribolium
castaneum]
Length = 647
Score = 635 bits (1637), Expect = e-179, Method: Compositional matrix adjust.
Identities = 322/506 (63%), Positives = 395/506 (78%), Gaps = 50/506 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AIAKLGW PTLIQERAIPL+L+ KDVLVRARTGSGKT AF IP+IQKI+ LK+TA+
Sbjct: 22 LKAIAKLGWQTPTLIQERAIPLLLEGKDVLVRARTGSGKTAAFTIPVIQKILTLKKTAKH 81
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
QE KAL+L+PSKELC+Q+ I+ELT+KCSR+++CVD++ QV++SVQ+PLLVE+PDIVV
Sbjct: 82 QEIKALILAPSKELCHQICGVIKELTVKCSREIRCVDVAPQVELSVQKPLLVEQPDIVVG 141
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H+KA +DLK+S+E+++IDEADLVFSFGYE ++K +L+ LP +YQAILASATL
Sbjct: 142 TPTRVLKHIKAGYMDLKTSMELLVIDEADLVFSFGYESEVKELLERLPSIYQAILASATL 201
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
SEDV +LK L+L NPVILKLEEP IAP SQL+HYH++A+E +KATILY LLKL+L++GKT
Sbjct: 202 SEDVKNLKSLVLHNPVILKLEEPEIAPASQLSHYHLMAEEMDKATILYALLKLHLIRGKT 261
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
IIFVNTVDKCYK+KLYLEQF I TCVLNSELPAK RCH+V QFNQG+YD I+ASDEKALE
Sbjct: 262 IIFVNTVDKCYKIKLYLEQFGIPTCVLNSELPAKIRCHSVNQFNQGIYDTIVASDEKALE 321
Query: 330 TPQINSTNN-----RKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384
P + N+ KRK+DKESGVSRGIDFQ V+NVINFDFPLD+Q Y+HRAGRTARG
Sbjct: 322 QP--GNPNDPELKKSKRKKDKESGVSRGIDFQCVANVINFDFPLDVQSYVHRAGRTARGN 379
Query: 385 NQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLD 444
NQG+ LS FVS+RE+ L+ V + ++ +D I K YQF LD
Sbjct: 380 NQGSVLS-----------------FVSIREKPLLEQVETHFKSD-QDDVSIFKSYQFKLD 421
Query: 445 EVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKALY 479
EV+ F+YRAKDAWR+ +YFEDNPTDL+ LRHDKAL+
Sbjct: 422 EVESFKYRAKDAWRAVTRIAVREARLKEIKQEIFNCQKLKSYFEDNPTDLQVLRHDKALH 481
Query: 480 TVRIQSHLADVPDYIVPPALKKLARI 505
TV+IQ HL+DVP+YIVPP LK +A +
Sbjct: 482 TVKIQQHLSDVPEYIVPPTLKGIASL 507
>gi|340726173|ref|XP_003401436.1| PREDICTED: probable ATP-dependent RNA helicase DDX56-like [Bombus
terrestris]
Length = 550
Score = 633 bits (1633), Expect = e-179, Method: Compositional matrix adjust.
Identities = 308/501 (61%), Positives = 382/501 (76%), Gaps = 43/501 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AI+KLGW+EPTLIQE+AIPL+++ KD+L+RARTGSGKT AF IP+IQKI++ K+
Sbjct: 29 LKAISKLGWVEPTLIQEKAIPLMMEGKDILIRARTGSGKTAAFTIPLIQKILSNKRMQTK 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
QE K L+++PSKELC Q+H I LT+KCSR+VK +D+S Q+D+S Q+PLL E+PDIVV
Sbjct: 89 QEIKGLIVAPSKELCKQIHDVIICLTVKCSREVKAIDVSPQLDLSAQKPLLAEKPDIVVG 148
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP+R L HLKA + LK SLE +IIDEADLVFSFGYED++K++L +LP +YQA LASATL
Sbjct: 149 TPSRLLQHLKANNMKLKQSLETLIIDEADLVFSFGYEDEIKSLLNYLPIVYQAALASATL 208
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
SEDV++LK L+LRNP ILKLEEP +AP+SQL+HY + A+E++KA ILY LLKL+LV+GKT
Sbjct: 209 SEDVVTLKKLVLRNPAILKLEEPPLAPLSQLSHYSLAAEENDKAAILYALLKLHLVRGKT 268
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
IIFVNTVD+CYKLKL+LEQF I TCVLNSELPA +RC AV QFN G YD+IIASDEK+LE
Sbjct: 269 IIFVNTVDRCYKLKLFLEQFGIPTCVLNSELPAVSRCRAVTQFNSGTYDIIIASDEKSLE 328
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
P I +RK+DKESGV+RGIDFQFVSNVINFDFP D+ YIHRAGRTARGKNQGTA
Sbjct: 329 EPHIMKVKRGRRKKDKESGVARGIDFQFVSNVINFDFPQDVNSYIHRAGRTARGKNQGTA 388
Query: 390 LSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGF 449
LSFVS+RE+ L+ E + + + D + K YQF L+EV+GF
Sbjct: 389 LSFVSIRERPLLEQV------------------ESELKHCYNRDTLFKTYQFKLEEVEGF 430
Query: 450 EYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKALYTVRIQ 484
YRAKDAW++ +YFEDNP DL++LR DKAL+TV++Q
Sbjct: 431 RYRAKDAWKAVTRIAVREARLKEIKQEVLNCQKLKSYFEDNPKDLQSLRQDKALHTVKLQ 490
Query: 485 SHLADVPDYIVPPALKKLARI 505
SHL DVP+YIVPP LK+L I
Sbjct: 491 SHLKDVPEYIVPPTLKRLVGI 511
>gi|350405187|ref|XP_003487352.1| PREDICTED: probable ATP-dependent RNA helicase DDX56-like [Bombus
impatiens]
Length = 550
Score = 633 bits (1633), Expect = e-179, Method: Compositional matrix adjust.
Identities = 308/498 (61%), Positives = 381/498 (76%), Gaps = 43/498 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AI+KLGW EPTLIQE+AIPL+++ KD+L+RARTGSGKT AF IP+IQKI++ K+ +
Sbjct: 29 LKAISKLGWAEPTLIQEKAIPLMMEGKDILIRARTGSGKTAAFTIPLIQKILSNKRMQKK 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
QE K L+++PSKELC Q+H I LT+KCSR+VK +D+S Q+D+S Q+PLL E+PDIVV
Sbjct: 89 QEIKGLIVAPSKELCKQIHDVIICLTVKCSREVKVIDVSPQLDLSAQKPLLAEKPDIVVG 148
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP+R L HLKA + LK SLE +IIDEADLVFSFGYED++K++L +LP +YQA LASATL
Sbjct: 149 TPSRLLQHLKANNMKLKQSLETLIIDEADLVFSFGYEDEIKSLLNYLPIVYQAALASATL 208
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
SEDV++LK L+LRNP ILKLEEP +AP+SQL+HY + A+E++KA ILY LLKL+LV+GKT
Sbjct: 209 SEDVVTLKKLVLRNPAILKLEEPPLAPLSQLSHYSLAAEENDKAAILYALLKLHLVRGKT 268
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
IIFVNTVD+CYKLKL+LEQF I TCVLNSELPA +RC AV QFN G YD+IIASDEK+LE
Sbjct: 269 IIFVNTVDRCYKLKLFLEQFGIPTCVLNSELPAVSRCRAVTQFNSGTYDIIIASDEKSLE 328
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
P I +RK+DKESGV+RGIDFQFVSNVINFDFP D+ YIHRAGRTARGKNQGTA
Sbjct: 329 EPHIIKVKRGRRKKDKESGVARGIDFQFVSNVINFDFPQDVNSYIHRAGRTARGKNQGTA 388
Query: 390 LSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGF 449
LSFVS+RE+ L+ E + + + D + K YQF L+EV+GF
Sbjct: 389 LSFVSIRERPLLEQV------------------ESELKHCYNRDTLFKTYQFKLEEVEGF 430
Query: 450 EYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKALYTVRIQ 484
YRAKDAW++ +YFEDNP DL++LR DKAL+TV++Q
Sbjct: 431 RYRAKDAWKAVTRIAVREARLKEIKQEVLNCQKLKSYFEDNPKDLQSLRQDKALHTVKLQ 490
Query: 485 SHLADVPDYIVPPALKKL 502
SHL DVPDYIVPP LK+L
Sbjct: 491 SHLKDVPDYIVPPTLKRL 508
>gi|307199009|gb|EFN79733.1| Probable ATP-dependent RNA helicase DDX56 [Harpegnathos saltator]
Length = 547
Score = 624 bits (1610), Expect = e-176, Method: Compositional matrix adjust.
Identities = 316/501 (63%), Positives = 385/501 (76%), Gaps = 43/501 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AIAKLGW EPTLIQE+AIPL+L+ KDVL+RARTGSGKTGAFA+P+IQKI+ K T +
Sbjct: 24 LKAIAKLGWPEPTLIQEKAIPLLLEGKDVLIRARTGSGKTGAFAVPLIQKILVNKCTQEK 83
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
QE K+++++PSKELC Q+ + I LT+KCSR+V+ VDIS Q D++ Q+PLLVE PDIVVA
Sbjct: 84 QEIKSVIVTPSKELCKQIQEVIVNLTVKCSREVRVVDISPQTDLNAQKPLLVEMPDIVVA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLKAK L LK SLE +IIDEADL+FSFGYEDDMKAVL +LP +YQA+LASATL
Sbjct: 144 TPGRLLQHLKAKNLVLKRSLETLIIDEADLIFSFGYEDDMKAVLAYLPTVYQAVLASATL 203
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
SEDV +LK L+L NP ILKLEEP +AP +QLAHY + A+E++KA ILY LLKL+L++GK+
Sbjct: 204 SEDVQTLKKLVLHNPAILKLEEPPLAPPTQLAHYTLAAEENDKAAILYALLKLHLIRGKS 263
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
IIFVNTVD+CYKLKL+LEQF I TCVLNSELPA +RC AV QFN G YDVIIASDEKALE
Sbjct: 264 IIFVNTVDRCYKLKLFLEQFGIPTCVLNSELPATSRCRAVTQFNSGTYDVIIASDEKALE 323
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
P + + KRK+DKESGV+RGIDFQFVSN+INFDFPLD+ YIHRAGRTARGKNQGTA
Sbjct: 324 EPHVVNKKKGKRKKDKESGVARGIDFQFVSNIINFDFPLDVDSYIHRAGRTARGKNQGTA 383
Query: 390 LSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGF 449
LSFV++RE+ LM + + EQ + + + + + K YQF L+EV+GF
Sbjct: 384 LSFVAIRERPLMEN--------VEEQ----------LKHTYNRNSLFKTYQFKLEEVEGF 425
Query: 450 EYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKALYTVRIQ 484
YRAKDAW++ +YFEDNP DL++LR DKAL+TV++Q
Sbjct: 426 RYRAKDAWKAVTRIAVREARLKEIKQEVMNCQKLKSYFEDNPRDLQSLRQDKALHTVKLQ 485
Query: 485 SHLADVPDYIVPPALKKLARI 505
HL DVP+YIVPP LK L I
Sbjct: 486 PHLKDVPEYIVPPTLKALMGI 506
>gi|380024218|ref|XP_003695902.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
DDX56-like [Apis florea]
Length = 551
Score = 623 bits (1607), Expect = e-176, Method: Compositional matrix adjust.
Identities = 300/498 (60%), Positives = 380/498 (76%), Gaps = 43/498 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+AKLGWLEPTLIQE+ IPL+++ KD+L+RARTGSGKT AF IP+IQKI++ K+ +
Sbjct: 28 LKAVAKLGWLEPTLIQEKTIPLMIEGKDILIRARTGSGKTAAFTIPLIQKILSNKRIRRQ 87
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
QE K L+++PSKELC Q+H I LT+KCSR+VK VDIS Q+D+S Q+PLL E+PDI+++
Sbjct: 88 QEIKGLIIAPSKELCKQIHDVIISLTIKCSREVKAVDISPQIDLSAQKPLLAEKPDIIIS 147
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP+R L HLKAK + LK SLE +IIDEADL+FSFG+E+++K +L +LP LYQA+LASATL
Sbjct: 148 TPSRLLQHLKAKNVKLKQSLETLIIDEADLIFSFGHENEIKDILNYLPILYQAVLASATL 207
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
SEDV++LK L+LR+PVILKLEEP +AP+SQL+HY + A+E++KA IL LLKL L++GKT
Sbjct: 208 SEDVITLKKLVLRHPVILKLEEPPLAPLSQLSHYSLAAEENDKAAILCALLKLRLIRGKT 267
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
IIFVNTVD+CYKLKL+LEQF I+TCVLNSELPA +RC AV QFN G YD+IIASDEK+LE
Sbjct: 268 IIFVNTVDRCYKLKLFLEQFGIATCVLNSELPAVSRCRAVTQFNSGTYDIIIASDEKSLE 327
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
P I KRK+DKESGV+RGIDFQFVSNV+NFDFP DI YIHRAGRTARGKN GT
Sbjct: 328 EPHIAKIKRGKRKKDKESGVARGIDFQFVSNVLNFDFPPDINSYIHRAGRTARGKNDGTV 387
Query: 390 LSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGF 449
LS VS+RE+ ++ D E + + D ++K Y+F L+EV+GF
Sbjct: 388 LSLVSIRERPILEDV------------------EVELKQCYNCDKLLKTYEFKLEEVEGF 429
Query: 450 EYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKALYTVRIQ 484
YRAKDAW++ +YFEDNP DL++LR DKAL+TV++Q
Sbjct: 430 RYRAKDAWKAVTRIAVREARLKEXKQEVLNCQKLKSYFEDNPRDLQSLRQDKALHTVKLQ 489
Query: 485 SHLADVPDYIVPPALKKL 502
HL DVPDYI+PP LK+L
Sbjct: 490 PHLKDVPDYIIPPTLKRL 507
>gi|383862497|ref|XP_003706720.1| PREDICTED: probable ATP-dependent RNA helicase DDX56-like
[Megachile rotundata]
Length = 547
Score = 623 bits (1606), Expect = e-176, Method: Compositional matrix adjust.
Identities = 306/501 (61%), Positives = 377/501 (75%), Gaps = 43/501 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+AKLGWLEPTLIQE+AIPL+L+ KDVL+RARTGSGKT AFAIP+IQKI+ K+ +
Sbjct: 29 LKAVAKLGWLEPTLIQEKAIPLLLEGKDVLIRARTGSGKTAAFAIPLIQKILLNKRAQKK 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
Q+ K L+++PSKELC Q+H I LT+KCSR+V VD+S Q+++ Q+PLL ++PDIV+
Sbjct: 89 QDIKGLIVAPSKELCKQIHDVIMSLTIKCSREVNVVDVSPQLELIAQKPLLNQKPDIVIG 148
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP+R L HLKA + LK SLE +IIDEADLVFSFGYED++K +L +LP +YQA LASATL
Sbjct: 149 TPSRLLQHLKANNMKLKHSLETLIIDEADLVFSFGYEDEIKNLLSYLPTVYQAALASATL 208
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
SEDVL+LK L+L PV LKLEEP +AP+SQL+HY + A+E++KA ILY LLKLNLV+GKT
Sbjct: 209 SEDVLTLKKLVLHRPVTLKLEEPPLAPLSQLSHYSLAAEENDKAAILYALLKLNLVRGKT 268
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
IIFVNTVD+CYKLKL+LEQF I TCVLNSELPA +RC AV QFN G YD+IIASDEK+LE
Sbjct: 269 IIFVNTVDRCYKLKLFLEQFGIPTCVLNSELPALSRCRAVSQFNSGTYDIIIASDEKSLE 328
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
P I KRK+DKESGV+RGIDFQFVSNVINFDFP D+ YIHRAGRTARGKNQGTA
Sbjct: 329 EPHIIKVKRGKRKKDKESGVARGIDFQFVSNVINFDFPPDVNSYIHRAGRTARGKNQGTA 388
Query: 390 LSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGF 449
LSF+S+RE+ L+ E + + + D + K YQF L+EV+GF
Sbjct: 389 LSFISIRERPLLEQV------------------ESELKHCYNRDALFKTYQFKLEEVEGF 430
Query: 450 EYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKALYTVRIQ 484
YRAKDAW++ +YFEDNP DL++LR DKAL+TV++Q
Sbjct: 431 RYRAKDAWKAVTRIAVREARLKEIKQEVLNCDKLKSYFEDNPRDLQSLRQDKALHTVKLQ 490
Query: 485 SHLADVPDYIVPPALKKLARI 505
HL DVP+YIVPP LK+L I
Sbjct: 491 PHLKDVPEYIVPPTLKRLVGI 511
>gi|328778265|ref|XP_391920.3| PREDICTED: probable ATP-dependent RNA helicase DDX56 isoform 1
[Apis mellifera]
Length = 552
Score = 618 bits (1593), Expect = e-174, Method: Compositional matrix adjust.
Identities = 300/498 (60%), Positives = 377/498 (75%), Gaps = 43/498 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+AKLGWLEPTLIQE+ IPL+++ KD+L+RARTGSGKT AF IP+IQKI++ KQT +
Sbjct: 29 LKAVAKLGWLEPTLIQEKTIPLMIEGKDILIRARTGSGKTAAFTIPLIQKILSNKQTRKQ 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
QE K L+++PSKELC Q+H I LT+KCSR+VK +DIS QVD+S Q+ LL E+PDIVV+
Sbjct: 89 QEIKGLIIAPSKELCKQIHDVIISLTIKCSREVKAIDISPQVDLSAQKLLLAEKPDIVVS 148
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP++ L HLKAK + LK SLE +IIDEADL+FSFGYE+++K +L +LP LYQA+LASATL
Sbjct: 149 TPSKLLQHLKAKNMKLKQSLETLIIDEADLIFSFGYENEIKDILNYLPILYQAVLASATL 208
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
SEDV++LK L+LR+PVILKLEE +AP+SQL+HY + A+E++KA IL LLKL L++GKT
Sbjct: 209 SEDVITLKKLVLRHPVILKLEEAPLAPLSQLSHYSLAAEENDKAAILCALLKLRLIRGKT 268
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
IIFVNTVD+CYKLKL+LEQF I+TCVLNSELPA +RC AV QFN G YD+IIASDEK+LE
Sbjct: 269 IIFVNTVDRCYKLKLFLEQFGIATCVLNSELPAVSRCRAVTQFNSGTYDIIIASDEKSLE 328
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
P I KRK+DKE G++RGIDFQFVSNV NFDFP DI YIHRAGRTARGKN GT
Sbjct: 329 EPHIAKVKRGKRKKDKEFGIARGIDFQFVSNVFNFDFPPDINSYIHRAGRTARGKNDGTV 388
Query: 390 LSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGF 449
LS VS+RE+ ++ D E + + D ++K Y+F L+EV+GF
Sbjct: 389 LSLVSIRERPILEDV------------------EVELKQCYNCDKLLKTYEFKLEEVEGF 430
Query: 450 EYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKALYTVRIQ 484
YRAKDAW++ +YFEDNP DL++LR DKAL+TV++Q
Sbjct: 431 RYRAKDAWKAVTRIAVREARLKEIKQEVLNCQKLKSYFEDNPRDLQSLRQDKALHTVKLQ 490
Query: 485 SHLADVPDYIVPPALKKL 502
HL DVPDYI+PP LK+L
Sbjct: 491 PHLKDVPDYIIPPTLKRL 508
>gi|242010319|ref|XP_002425916.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
corporis]
gi|212509892|gb|EEB13178.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
corporis]
Length = 544
Score = 610 bits (1572), Expect = e-172, Method: Compositional matrix adjust.
Identities = 293/498 (58%), Positives = 387/498 (77%), Gaps = 41/498 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AIA+LGW+EPTLIQE+AIPLIL+ K++L+RARTGSGKT AFAIP+IQKI++ K +
Sbjct: 19 LKAIARLGWIEPTLIQEKAIPLILEGKNILLRARTGSGKTAAFAIPVIQKILSAKPLSLN 78
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
Q +AL+L+PSKELC+Q+++N ELT+KCSR+V C+DIS+ +++S Q+PLLVE PD+V+A
Sbjct: 79 QVIRALILAPSKELCSQIYQNFIELTVKCSREVSCLDISQHLELSAQKPLLVEGPDVVIA 138
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP+RALAHLKA+ + LK SLE++I+DEADLVFSFG+E+D+K +L +LP +YQA+LASATL
Sbjct: 139 TPSRALAHLKAQNMTLKDSLEMLIVDEADLVFSFGFENDLKQILSYLPDVYQAVLASATL 198
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
++DVL+LK L L+NPVILKL+EP +AP +QLAHYHI A+E+EKA ILY LLKL+L++GKT
Sbjct: 199 TKDVLNLKELTLQNPVILKLKEPELAPTTQLAHYHISAEEEEKAVILYVLLKLSLIRGKT 258
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
IIFVN VDKCY+LKLYLEQF I +C+LNSELPA RCHAV Q+N G+YD+IIASDE +
Sbjct: 259 IIFVNHVDKCYRLKLYLEQFNIPSCILNSELPASMRCHAVTQYNLGVYDLIIASDENIAD 318
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
P N NNRKRK+DKE GV RGIDFQFVSNVINFDFP + YIHR GRTARG N+GTA
Sbjct: 319 DPGAN-LNNRKRKKDKEFGVIRGIDFQFVSNVINFDFPKTVVSYIHRVGRTARGNNEGTA 377
Query: 390 LSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGF 449
LSFV+ +E+ L +++ N + + ++ + +I+ Y+F ++EV+GF
Sbjct: 378 LSFVASKERQLF-------------EEVENHLK--MSYDIDSNQSVIRAYEFKMEEVEGF 422
Query: 450 EYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKALYTVRIQ 484
YR++DAWR+ +YF+DNP DL+ LRHD+AL+TV+ Q
Sbjct: 423 RYRSRDAWRAVTKIAVREARLKEIRQEILNDNKLKSYFKDNPRDLQCLRHDRALHTVKQQ 482
Query: 485 SHLADVPDYIVPPALKKL 502
HLA+VP+YI+PP+LK L
Sbjct: 483 QHLANVPEYIIPPSLKGL 500
>gi|307171935|gb|EFN63564.1| Probable ATP-dependent RNA helicase DDX56 [Camponotus floridanus]
Length = 546
Score = 595 bits (1534), Expect = e-167, Method: Compositional matrix adjust.
Identities = 305/501 (60%), Positives = 374/501 (74%), Gaps = 43/501 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AIAKLGW EPTLIQE+AIPLIL+ KDVL+RARTGSGKT AFA+P+IQKI+ K+ +
Sbjct: 24 LKAIAKLGWNEPTLIQEKAIPLILEGKDVLIRARTGSGKTAAFALPLIQKILVNKRMQKK 83
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
Q+ K L+++PSKELC Q++ I LT KC R+V+ +DIS Q D++ Q+PLL E PDI+V
Sbjct: 84 QQIKGLIVAPSKELCKQIYDVIMCLTTKCYREVRVIDISPQTDLNAQKPLLNEMPDIIVV 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP+R L HLKA + LK SLE +IIDEADL+FSFGYE+++KAVL +LP YQAILASATL
Sbjct: 144 TPSRLLQHLKAGNMMLKHSLETLIIDEADLLFSFGYENEIKAVLTYLPTAYQAILASATL 203
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
SEDV +LK L+L NP ILKLEEP +AP +QLAHY + A+E +KA ILY LLKL+L++GKT
Sbjct: 204 SEDVQALKRLVLHNPAILKLEEPPLAPPTQLAHYTLAAEETDKAAILYALLKLHLIRGKT 263
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
IIFVNTVD+CYKLKL+LEQF I TC+LNSELPA +RC AV QFN G YD+IIASDEKALE
Sbjct: 264 IIFVNTVDRCYKLKLFLEQFGIPTCILNSELPATSRCRAVTQFNSGTYDIIIASDEKALE 323
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
P + T KRK+DKESGV+RGIDFQFVSNVINFDFPLDI YIHRAGRTARGKNQGTA
Sbjct: 324 EPHVIKTKKDKRKKDKESGVARGIDFQFVSNVINFDFPLDINSYIHRAGRTARGKNQGTA 383
Query: 390 LSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGF 449
LS FV++RE+ LM V E+L + ++ + K YQF L+EV+GF
Sbjct: 384 LS-----------------FVAIRERPLMEKVEEHLKGTYNCEN-LFKTYQFKLEEVEGF 425
Query: 450 EYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKALYTVRIQ 484
YRAKD W++ +YFEDNP DL++LR DKAL+TV++Q
Sbjct: 426 RYRAKDGWKAVTRIAVREARLKEIRQEVINCEKLKSYFEDNPRDLQSLRQDKALHTVKLQ 485
Query: 485 SHLADVPDYIVPPALKKLARI 505
HL DVP+YI+P LK + I
Sbjct: 486 PHLKDVPEYIIPSTLKGIMGI 506
>gi|328710486|ref|XP_001948002.2| PREDICTED: probable ATP-dependent RNA helicase DDX56-like
[Acyrthosiphon pisum]
Length = 546
Score = 592 bits (1525), Expect = e-166, Method: Compositional matrix adjust.
Identities = 290/511 (56%), Positives = 380/511 (74%), Gaps = 45/511 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQ-TAQ 88
L+AIA GW EPTL+QE IPL+L+ KD+LVRARTGSGKT AF IP+IQKI+ K A
Sbjct: 17 LKAIANQGWTEPTLVQEHGIPLLLEGKDMLVRARTGSGKTAAFVIPVIQKILEFKDINAD 76
Query: 89 VQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
T+AL+L+PSKELCNQ+ KNI +LT+KCSRDVKCVDIS+Q+D+ Q+PLL PD++V
Sbjct: 77 TYCTQALILAPSKELCNQIFKNILQLTIKCSRDVKCVDISDQIDMKEQQPLLNIPPDVIV 136
Query: 149 ATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
ATPARAL HL+ K + LK L+ +++DEADLVFSFG+E+++K V+KFLPK YQA+LASAT
Sbjct: 137 ATPARALLHLQGKNMTLKK-LQTLVVDEADLVFSFGFEEEIKEVIKFLPKTYQAVLASAT 195
Query: 209 LSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGK 268
LSEDV++LK L+LRN VILKL+EP +AP+SQL HY + A+E++KA ILY + KL LV+GK
Sbjct: 196 LSEDVMALKKLLLRNAVILKLQEPDLAPLSQLTHYKLNAEEEDKAVILYCIFKLKLVKGK 255
Query: 269 TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL 328
TI+FVN+VDKCYKLKL+LEQF + TCVLNSELPA RCH + QFN +YD+I+ASDEK L
Sbjct: 256 TIVFVNSVDKCYKLKLFLEQFGVHTCVLNSELPASCRCHTINQFNDNIYDIILASDEKFL 315
Query: 329 -ETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQG 387
E +I ST+ KRK DKE ++RGIDFQFVS VINFDFP DI YIHR GRTARGKN+G
Sbjct: 316 DEEHEITSTSTNKRKHDKEFSIARGIDFQFVSIVINFDFPQDIYSYIHRVGRTARGKNKG 375
Query: 388 TALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVK 447
TA +SF++++E +L+ DV +Y+ + E++ I + + F L+EV+
Sbjct: 376 TA-----------------ISFLNIKELNLLKDVEDYIKQGISEENDIFQDFNFKLEEVE 418
Query: 448 GFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKALYTVR 482
GF YRAKDAWR+ YF++NP DL +LRHDKAL+TV+
Sbjct: 419 GFRYRAKDAWRAVTKIAVREARLKEIKSEMLNSKKLKRYFQENPRDLLSLRHDKALHTVK 478
Query: 483 IQSHLADVPDYIVPPALKKLARIEDDGDEDV 513
+Q H++DVPDY+VP +LK+ + +++ D+ +
Sbjct: 479 LQDHMSDVPDYMVPTSLKEYIKTQEEEDKGI 509
>gi|357616261|gb|EHJ70100.1| RNA helicase [Danaus plexippus]
Length = 559
Score = 582 bits (1500), Expect = e-163, Method: Compositional matrix adjust.
Identities = 292/504 (57%), Positives = 371/504 (73%), Gaps = 51/504 (10%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AI++LGW PTLIQE AIPL+L+ KDVL+RARTGSGKT AF IP+IQKI+NLK T+
Sbjct: 19 LKAISQLGWPHPTLIQETAIPLLLEGKDVLMRARTGSGKTAAFTIPVIQKILNLKNTSAH 78
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
Q +AL+LSPSKELC Q+ + LT+KC+R+V+C+DIS D+ +Q+ LL ++PDIVV+
Sbjct: 79 QCIRALILSPSKELCGQITSVVGHLTLKCAREVRCIDISSNGDMQIQKSLLADKPDIVVS 138
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP+R LAHLKA + LK + ++++DEADLVFSFGYE+++K +L+ LPK+YQA+LASATL
Sbjct: 139 TPSRVLAHLKANNVRLKEDIAMLVVDEADLVFSFGYENEIKELLEHLPKIYQAVLASATL 198
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
S+DVLSLK ++LRNPV LKLEEP +AP +QL HYH+ A+ED+KA ILY LLKLNL++GKT
Sbjct: 199 SDDVLSLKKIVLRNPVTLKLEEPELAPSTQLQHYHLFAEEDDKAAILYALLKLNLIRGKT 258
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
IIFV TVD+CYKLKLYLEQFKI +CVLNSELPA RC +V QFN+G Y +I+ASDEKALE
Sbjct: 259 IIFVRTVDRCYKLKLYLEQFKIGSCVLNSELPAAVRCMSVEQFNRGRYQIIVASDEKALE 318
Query: 330 TP----QINSTN----NRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTA 381
P + T KR++DKESGVSRGIDFQ VSNVINFDFPLD+ Y+HRAGRTA
Sbjct: 319 EPDGGMMLEETGKKKQKSKRRKDKESGVSRGIDFQHVSNVINFDFPLDVTAYVHRAGRTA 378
Query: 382 RGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQF 441
RG +QG+ LSF VS+RE+ LMN V E+L T +++ Y F
Sbjct: 379 RGTSQGSVLSF-----------------VSIREKPLMNAVKEHL-TKCFNGQKVLQKYSF 420
Query: 442 NLDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDK 476
LDEV+GF YR++DAWR+ YFE+NPTDL L+ DK
Sbjct: 421 ALDEVEGFRYRSRDAWRAVTRVAVREARLSEIRRELLNCKRLQGYFEENPTDLAALKRDK 480
Query: 477 ALYTVRIQSHLADVPDYIVPPALK 500
AL+TVR+Q LA VP+Y++P AL+
Sbjct: 481 ALHTVRLQPQLAHVPEYLLPAALR 504
>gi|170043535|ref|XP_001849439.1| ATP-dependent RNA helicase DBP9 [Culex quinquefasciatus]
gi|167866845|gb|EDS30228.1| ATP-dependent RNA helicase DBP9 [Culex quinquefasciatus]
Length = 551
Score = 576 bits (1484), Expect = e-161, Method: Compositional matrix adjust.
Identities = 279/505 (55%), Positives = 370/505 (73%), Gaps = 51/505 (10%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ IAKLGWL PTLIQE+AIPL+L+ KDVLVRARTGSGKT AF+IP+IQ+I+ K A+
Sbjct: 22 LKGIAKLGWLCPTLIQEKAIPLLLEGKDVLVRARTGSGKTAAFSIPIIQQILTRKVEAKE 81
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
QET +VL+PS++LC Q K ++ LT+KC R V+CVD+S +VD + + +L ERPD+VV+
Sbjct: 82 QETTVIVLAPSRDLCLQTAKVMEALTIKCGRLVRCVDLSAKVDKAALKHMLAERPDVVVS 141
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TPA+ LA L+ TL++K SL+ +I+DEADL+FSFG+E D+KAVL F+P ++Q++LASATL
Sbjct: 142 TPAKLLAQLQEGTLNVKDSLKTLIVDEADLMFSFGFESDLKAVLDFMPSVHQSVLASATL 201
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+DVL LK +IL NPVILKLEEP IAP SQLAH+HILA+E +KA +LYTL+KL LV+GK+
Sbjct: 202 EKDVLELKKIILHNPVILKLEEPEIAPASQLAHFHILAEEVDKAAVLYTLVKLQLVKGKS 261
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
IIFV+++D+CYKLKL+LEQF I +CVLNSELPAK RCH V QFNQGLYD+I+ASDE +
Sbjct: 262 IIFVDSIDRCYKLKLFLEQFSIRSCVLNSELPAKIRCHTVSQFNQGLYDIIVASDELHVL 321
Query: 330 TPQINSTNNRK---------RKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRT 380
P + + ++++ E+GV+RGIDFQFVSNVINFDFP DI YIHRAGRT
Sbjct: 322 DPAVKEKKGQNKKKMLKQIAKQKESEAGVARGIDFQFVSNVINFDFPKDINSYIHRAGRT 381
Query: 381 ARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQ 440
ARG N G+ LS FVS+ E+D+M+ V ++L + + + ++K YQ
Sbjct: 382 ARGNNTGSVLS-----------------FVSVAEKDMMDSVEDHLKSGYEQSETVMKSYQ 424
Query: 441 FNLDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHD 475
F ++EV+ F YRA+DAWR+ ++FE+NP DL+ LRHD
Sbjct: 425 FKMEEVEPFRYRARDAWRAVTKISIREARIKEIKTEMFNSEKLKSFFEENPRDLQALRHD 484
Query: 476 KALYTVRIQSHLADVPDYIVPPALK 500
+ L+TV+IQ HL DVP+YIVP +LK
Sbjct: 485 RTLHTVKIQEHLGDVPEYIVPDSLK 509
>gi|321462909|gb|EFX73929.1| hypothetical protein DAPPUDRAFT_109408 [Daphnia pulex]
Length = 541
Score = 572 bits (1475), Expect = e-160, Method: Compositional matrix adjust.
Identities = 281/504 (55%), Positives = 349/504 (69%), Gaps = 46/504 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AIAKLGW+ PTLIQE+ IPL L+ KDVL + RTGSGKT FAIP+IQ I+ KQTA+
Sbjct: 8 LKAIAKLGWVSPTLIQEKGIPLFLEGKDVLAKGRTGSGKTAVFAIPIIQNILTEKQTAKE 67
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
Q T+AL+L+P+KELC QLHK Q T CSRDV V++ Q +S Q+ LL PDI++A
Sbjct: 68 QVTRALILAPTKELCQQLHKAFQSFTTSCSRDVSIVNVGSQTAISGQKTLLAAHPDIIIA 127
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP+ L HL +K L LK SL+ +IDEADLVFSFG+E+D+K+VL +LP YQ +L SATL
Sbjct: 128 TPSTILVHLVSKKLVLKDSLQFFVIDEADLVFSFGFEEDLKSVLGYLPTDYQCVLTSATL 187
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+D+ SLK L+L PV LKLEEP + P SQL Y I A+E +KA ++Y L KL LV+GKT
Sbjct: 188 GDDIQSLKQLVLHQPVTLKLEEPELPPASQLTQYQIYAEESDKAVLIYALFKLGLVRGKT 247
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
IIFV VD+CYKLKLYL+QF I +C LN ELP +RCH V QFN G+YD+IIASDE LE
Sbjct: 248 IIFVRNVDRCYKLKLYLQQFGIPSCALNGELPVNSRCHIVQQFNAGIYDIIIASDESTLE 307
Query: 330 TPQINS---TNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQ 386
P S +N KRK DKESGV RGIDFQFVSNVINFDFP D+ YIHR GRTARG N+
Sbjct: 308 DPNYASADQSNKGKRKNDKESGVVRGIDFQFVSNVINFDFPSDVDSYIHRVGRTARGNNK 367
Query: 387 GTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHED-DFIIKPYQFNLDE 445
GTALS FVS+RE+ LM V E+L + D + KPYQF ++E
Sbjct: 368 GTALS-----------------FVSVREKYLMERVEEHLQDWVPPGQDSVFKPYQFRMEE 410
Query: 446 VKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKALYT 480
++ F YR++DAW++ ++FE+NP D+ LRHDKAL+T
Sbjct: 411 IEAFRYRSQDAWKTVTRIAVREARLAEIKSEMMQSKKLRSHFENNPNDMGILRHDKALHT 470
Query: 481 VRIQSHLADVPDYIVPPALKKLAR 504
VRIQSHL DVPDYI+PP L++LA+
Sbjct: 471 VRIQSHLKDVPDYIIPPTLRRLAK 494
>gi|157106028|ref|XP_001649134.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
gi|108879960|gb|EAT44185.1| AAEL004445-PA [Aedes aegypti]
Length = 548
Score = 571 bits (1471), Expect = e-160, Method: Compositional matrix adjust.
Identities = 276/509 (54%), Positives = 369/509 (72%), Gaps = 50/509 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ IAKLGWL PTLIQE+AIPL+L+ KDVLVRARTGSGKT AF+IP+IQKI+N KQ A+
Sbjct: 22 LKGIAKLGWLCPTLIQEKAIPLLLEGKDVLVRARTGSGKTAAFSIPVIQKILNYKQDAKE 81
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
Q+T ++L+PSK+LC+Q+ K I++LT+KC R V+CVD+S +VD + +L ERPDIVV+
Sbjct: 82 QQTTVVILAPSKDLCHQIAKVIEDLTIKCGRLVRCVDLSTKVDKVALKHILAERPDIVVS 141
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TPA+ ++ L+ + +K SL+ +++DEADL+F+FG+E+D+K VL + P ++Q+ILASATL
Sbjct: 142 TPAKLVSQLQEGNISVKDSLQTLVVDEADLMFTFGFENDLKTVLDYFPSVHQSILASATL 201
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+DV+ LK +IL NPVILKLEEP +AP SQLAHYHILA+E +KA +LYTL KL LV+GK+
Sbjct: 202 EKDVMELKKIILHNPVILKLEEPEMAPASQLAHYHILAEEVDKAAVLYTLFKLQLVKGKS 261
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
IIFVN++D+CY+LKL+LEQF I +C+LNSELPAK RCH V QFNQGLYD+IIASDE +
Sbjct: 262 IIFVNSIDRCYRLKLFLEQFSIRSCILNSELPAKIRCHTVNQFNQGLYDIIIASDELHVL 321
Query: 330 TPQINSTNNRK--------RKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTA 381
P +N +K ++ + E+GVSRGIDFQFVSNVINFDFP D+ YIHRAGRTA
Sbjct: 322 DPSVNEKKGQKKKMIKQIAKQVESEAGVSRGIDFQFVSNVINFDFPKDVNAYIHRAGRTA 381
Query: 382 RGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQF 441
RG N G + LS VS+ E++ M+ V ++L E D ++K Y F
Sbjct: 382 RGNNTG-----------------SVLSLVSIEEKEAMDAVEDHLRPGYEEGDQVLKSYHF 424
Query: 442 NLDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDK 476
++EV+ F YRA+DAWR+ ++FE+NP DL+ LRHD+
Sbjct: 425 KMEEVEPFRYRARDAWRAVTKFSIREARIKEIKTEMFNSEKLKSFFEENPRDLQALRHDR 484
Query: 477 ALYTVRIQSHLADVPDYIVPPALKKLARI 505
L+TV++Q HL DVP+YIVP +LK + I
Sbjct: 485 TLHTVKVQEHLGDVPEYIVPDSLKHVTGI 513
>gi|443726609|gb|ELU13728.1| hypothetical protein CAPTEDRAFT_150704 [Capitella teleta]
Length = 549
Score = 546 bits (1408), Expect = e-153, Method: Compositional matrix adjust.
Identities = 267/498 (53%), Positives = 360/498 (72%), Gaps = 44/498 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+AKLGW+ PTLIQE+AIPL L KD+L RARTGSGKT A+ IP++QKI++ K TA
Sbjct: 21 LKAVAKLGWMHPTLIQEKAIPLALNGKDILARARTGSGKTAAYVIPVLQKILSSKLTASE 80
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
Q +AL+L+P++ELCNQ+ KNI EL + CSR+V +DIS Q+ + Q+P+L E+PDIVV+
Sbjct: 81 QCIRALILTPTRELCNQVSKNIAELCLSCSREVSTIDISGQMSLESQKPMLAEKPDIVVS 140
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP+R L HL+A TL LK SLE ++IDEADLVFSFGYE D++A+ +LP++YQA L SATL
Sbjct: 141 TPSRILLHLQAGTLSLKESLEFLVIDEADLVFSFGYESDLQAIKSYLPRIYQAFLMSATL 200
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
SEDV SLK ++L N VILKLE+ ++ ++L+ YHI +EDEK ILY++LKL L++GKT
Sbjct: 201 SEDVKSLKSMVLHNAVILKLEDSSLPTSAKLSQYHIRCEEDEKYVILYSMLKLRLIRGKT 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
++FVNTVDKCY+LKL+LEQF+I++CVLNSELP +RCH V QFN G YD+IIASDE ALE
Sbjct: 261 LLFVNTVDKCYRLKLFLEQFQIASCVLNSELPVNSRCHIVSQFNSGFYDIIIASDEVALE 320
Query: 330 TP-QINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGT 388
TP ++ T + + +DKESG+SRGIDFQ+VSNVINFD PLD YIHR GRTARG N
Sbjct: 321 TPSEVKKTKKKTKGKDKESGISRGIDFQYVSNVINFDLPLDADSYIHRVGRTARGDN--- 377
Query: 389 ALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKG 448
+GTALSF+++++Q+ ++ L L + + ++KPY F + E++G
Sbjct: 378 --------------EGTALSFIAVKDQERQMEIEAALSDGLPKGEQVLKPYLFKMKEIEG 423
Query: 449 FEYRAKDAWRSN-------------------------YFEDNPTDLETLRHDKALYTVRI 483
F+YRA+DA ++ YF+DNP D + LRHD+ T ++
Sbjct: 424 FQYRAQDALKAVTKVAVKNTRMNEIKKELLNSQKLKLYFKDNPRDQQVLRHDRR-STNKV 482
Query: 484 QSHLADVPDYIVPPALKK 501
Q HL +VP+Y+VPP L+K
Sbjct: 483 QGHLQNVPNYLVPPTLRK 500
>gi|42539171|gb|AAS18604.1| RNA helicase [Choristoneura fumiferana]
Length = 565
Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust.
Identities = 276/511 (54%), Positives = 351/511 (68%), Gaps = 63/511 (12%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++A+A+L W EPTLIQE AIPL+L+ KDVL+RARTGSGKT AF IP+IQKI++L T++
Sbjct: 19 IKAVAQLAWSEPTLIQETAIPLLLEGKDVLMRARTGSGKTAAFTIPVIQKILHLNNTSEH 78
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
Q +AL+LSPSKELC Q+ I +LT+KC+R+V+C+DIS D+ Q+ LL ++PDIVVA
Sbjct: 79 QCIRALILSPSKELCGQITSVIADLTLKCAREVRCIDISANGDMQTQKALLSDKPDIVVA 138
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP++ALAHLKA + LK L ++++DEADLVF FGYED++K +L LPK+YQA+LASATL
Sbjct: 139 TPSKALAHLKANNMRLKDDLAMLVVDEADLVFPFGYEDEIKELLGHLPKIYQAVLASATL 198
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDE-----KATILYTLLKLNL 264
S+DVLSLK + LRNPV LKLE+ + H+H K+ LKLNL
Sbjct: 199 SDDVLSLKKIGLRNPVTLKLEDQS------WGHHHSYNTSSYSPGRCKSRHFVCPLKLNL 252
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
V+GK+IIFV TVD+CYKLKLYLEQFKI +CVLNSELPA RC +V QFN+G Y +I+ASD
Sbjct: 253 VRGKSIIFVRTVDRCYKLKLYLEQFKIGSCVLNSELPAAVRCLSVDQFNRGRYQIIVASD 312
Query: 325 EKALETP----------QINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYI 374
EKALE P Q KRKRDKESGVSRGIDFQ VSNVINFDFPLD+ Y+
Sbjct: 313 EKALEKPDGGILPIEERQKKKKQASKRKRDKESGVSRGIDFQHVSNVINFDFPLDVNSYV 372
Query: 375 HRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDF 434
HRAGRTARG N G+ LSFVS+RE+ LM+ G ++ VN
Sbjct: 373 HRAGRTARGNNSGSVLSFVSIREKPLMDPGWRTTY--------QGGVN---------GQK 415
Query: 435 IIKPYQFNLDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDL 469
+++ Y+F L+EV+GF YR++D WR+ YFE+NPTDL
Sbjct: 416 VLQKYEFALEEVEGFRYRSRDPWRAVTRIAVREARLKEIKQELLNCKKLQGYFEENPTDL 475
Query: 470 ETLRHDKALYTVRIQSHLADVPDYIVPPALK 500
LR DKAL+TVR+Q LA VP+Y++P AL+
Sbjct: 476 AALRRDKALHTVRVQPQLAHVPEYLLPHALR 506
>gi|289742677|gb|ADD20086.1| RNA helicase [Glossina morsitans morsitans]
Length = 543
Score = 522 bits (1344), Expect = e-145, Method: Compositional matrix adjust.
Identities = 267/498 (53%), Positives = 339/498 (68%), Gaps = 51/498 (10%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AI+KLGW EPTLIQE AIPL+L+ KDV+V+ARTGSGKT AFA+P++QKI+N K A
Sbjct: 20 LKAISKLGWTEPTLIQEAAIPLLLEGKDVIVKARTGSGKTAAFALPLLQKILNTKMNAAE 79
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
Q AL+L+PSKELC Q +Q+++ KC + ++ +D+S D+ Q L ERPD+VV+
Sbjct: 80 QCISALILAPSKELCQQTRVAMQQMSEKCGKVLRIIDLSSN-DLLAQRHALSERPDVVVS 138
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TPA+ L HL+A LDLK LE +++DEADL FSFG+E + K +++LP +YQA+L SAT+
Sbjct: 139 TPAKILLHLQASALDLKC-LETLVVDEADLAFSFGFEKEFKKFVEYLPPIYQAVLVSATI 197
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+++V+ +K +IL+NPVILKLEEP + P QL H I+ +ED+K ILY LLKL L++GK
Sbjct: 198 TQEVIDIKSIILKNPVILKLEEPELVPEQQLLHQRIIVEEDDKPAILYALLKLRLIRGKN 257
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
+IFVN+VD+ YKLKL++EQF I +CVLNSELP+ R H + QFNQG YD+IIASDE LE
Sbjct: 258 VIFVNSVDRSYKLKLFIEQFSIKSCVLNSELPSTIRIHTINQFNQGAYDLIIASDEHMLE 317
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
P N K DKESG SRGIDF VSNVIN DFP D YIHRAGRTARG N+GT
Sbjct: 318 NPGRN-------KSDKESGASRGIDFHCVSNVINLDFPKDANSYIHRAGRTARGNNKGTV 370
Query: 390 LSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGF 449
LSFVSL EQ N+ V E L + D+ IIK YQF LDEV+ F
Sbjct: 371 LSFVSLHEQQ-TNE----------------KVEERLRSGYKSDEQIIKNYQFKLDEVEPF 413
Query: 450 EYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKALYTVRIQ 484
YRAKDAWR+ +F +N DL+ LRHDK L T++IQ
Sbjct: 414 RYRAKDAWRAITRIAVHESRVREIKQEIFNSEKLKGFFNENTRDLQVLRHDKPLKTIKIQ 473
Query: 485 SHLADVPDYIVPPALKKL 502
HL+ VPDYIVP ALK+L
Sbjct: 474 PHLSQVPDYIVPKALKRL 491
>gi|158287479|ref|XP_564375.2| AGAP011147-PA [Anopheles gambiae str. PEST]
gi|157019670|gb|EAL41595.2| AGAP011147-PA [Anopheles gambiae str. PEST]
Length = 551
Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust.
Identities = 259/509 (50%), Positives = 342/509 (67%), Gaps = 50/509 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ IA+LGW+ PTL+QE+AIP +L+ KDVL+RARTGSGKT AFAIP+IQ ++ K V
Sbjct: 23 LRDIARLGWISPTLVQEKAIPFLLEGKDVLIRARTGSGKTAAFAIPIIQNVLRYKTETAV 82
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ET LV++PS++LC+Q+ K LT C ++ D+S + + + LL ERPDIVV+
Sbjct: 83 RETSVLVMAPSQDLCHQIAKVFASLTYSCGPLIRVADLSSKEEKATHRHLLAERPDIVVS 142
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L TL+++ SL V IDEADL+F+FG+E D+K VLK P ++Q++L SATL
Sbjct: 143 TPGRLRTVLADGTLNVRESLRCVTIDEADLMFTFGFEKDLKEVLKHFPPVHQSVLCSATL 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
EDV +K ++LRNPVILKLEEP +A +QL HY I A+E +KA ILYT+LKL L+QGK
Sbjct: 203 EEDVTQMKKMVLRNPVILKLEEPQLAVGTQLTHYQIEAEEVDKAAILYTVLKLKLIQGKC 262
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
IIFV +VD+CY+LKL+LEQF I +C+LNSELP K RCH V+QFNQG YD+IIASDE E
Sbjct: 263 IIFVKSVDRCYRLKLFLEQFGIRSCILNSELPIKIRCHTVHQFNQGSYDIIIASDELMAE 322
Query: 330 TPQI--------NSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTA 381
P + ST ++ + ES VSRGIDFQ VS V+NFDFP D+ YIHRAGRTA
Sbjct: 323 NPALVKKKSDKKPSTKQLLQQTETESSVSRGIDFQCVSCVVNFDFPSDLNSYIHRAGRTA 382
Query: 382 RGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQF 441
RG+N +G+ LSFV + E +L +V E+L T ++ +F +K + F
Sbjct: 383 RGQN-----------------NGSVLSFVGIEELELKRNVEEFLQTLSNDAEFSMKDFNF 425
Query: 442 NLDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDK 476
N DEV+ F YRAKDAWR+ ++FE+NP DL+TLRHD+
Sbjct: 426 NFDEVEAFRYRAKDAWRAITKISIREARIKELKMEIFNSEKLKSFFEENPRDLQTLRHDR 485
Query: 477 ALYTVRIQSHLADVPDYIVPPALKKLARI 505
L+TV +Q HL DVP+Y+VP ALK + I
Sbjct: 486 PLHTVHVQEHLGDVPEYLVPAALKPMVDI 514
>gi|158287483|ref|XP_309500.4| AGAP011145-PA [Anopheles gambiae str. PEST]
gi|157019672|gb|EAA05151.5| AGAP011145-PA [Anopheles gambiae str. PEST]
Length = 548
Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust.
Identities = 259/509 (50%), Positives = 342/509 (67%), Gaps = 50/509 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ IA+LGW+ PTL+QE+AIP +L+ KDVL+RARTGSGKT AFAIP+IQ ++ K V
Sbjct: 20 LRDIARLGWISPTLVQEKAIPFLLEGKDVLIRARTGSGKTAAFAIPIIQNVLRYKTETAV 79
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ET LV++PS++LC+Q+ K LT C ++ D+S + + + LL ERPDIVV+
Sbjct: 80 RETSVLVMAPSQDLCHQIAKVFASLTYSCGPLIRVADLSSKEEKATHRHLLAERPDIVVS 139
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L TL+++ SL V IDEADL+F+FG+E D+K VLK P ++Q++L SATL
Sbjct: 140 TPGRLRTVLADGTLNVRESLRCVTIDEADLMFTFGFEKDLKEVLKHFPPVHQSVLCSATL 199
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
EDV +K ++LRNPVILKLEEP +A +QL HY I A+E +KA ILYT+LKL L+QGK
Sbjct: 200 EEDVTQMKKMVLRNPVILKLEEPQLAVGTQLTHYQIEAEEVDKAAILYTVLKLKLIQGKC 259
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
IIFV +VD+CY+LKL+LEQF I +C+LNSELP K RCH V+QFNQG YD+IIASDE E
Sbjct: 260 IIFVKSVDRCYRLKLFLEQFGIRSCILNSELPIKIRCHTVHQFNQGSYDIIIASDELMAE 319
Query: 330 TPQI--------NSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTA 381
P + ST ++ + ES VSRGIDFQ VS V+NFDFP D+ YIHRAGRTA
Sbjct: 320 NPALVKKKSDKKPSTKQLLQQTEAESSVSRGIDFQCVSCVVNFDFPSDLNSYIHRAGRTA 379
Query: 382 RGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQF 441
RG+N G + LSFV ++E +L +V E+L T ++ +F +K + F
Sbjct: 380 RGQNNG-----------------SVLSFVGIQELELKRNVEEFLQTLSNDAEFSMKDFNF 422
Query: 442 NLDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDK 476
N DEV+ F YRAKDAWR+ ++FE+NP DL+TLRHD+
Sbjct: 423 NFDEVEAFRYRAKDAWRAITKISIREARIKELKMEIFNSEKLKSFFEENPRDLQTLRHDR 482
Query: 477 ALYTVRIQSHLADVPDYIVPPALKKLARI 505
L+TV +Q HL DVP+Y+VP ALK + I
Sbjct: 483 PLHTVHVQEHLGDVPEYLVPAALKPMVDI 511
>gi|432884660|ref|XP_004074527.1| PREDICTED: probable ATP-dependent RNA helicase DDX56-like [Oryzias
latipes]
Length = 558
Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust.
Identities = 252/505 (49%), Positives = 343/505 (67%), Gaps = 53/505 (10%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+A LGW +PTLIQE+AIPL L+ KD+L RARTGSGKT A+A+P+IQ I+ KQ+ +
Sbjct: 18 LKAVADLGWSQPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAVPIIQHILTSKQSVRE 77
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
Q + LVL P+KEL Q+ +++LT CSRDV+ DIS + DVS Q P+L+E+PD+VV
Sbjct: 78 QAVRVLVLVPTKELGQQVQTMMRQLTSFCSRDVRVADISSKADVSSQRPILMEKPDVVVG 137
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TPAR LAH+ A LDL++SLE++++DEADL+FSFG+E D+K++L LPK+YQ+ L SAT
Sbjct: 138 TPARVLAHINAHNLDLQASLEVLVVDEADLIFSFGFEADLKSLLCHLPKIYQSFLMSATF 197
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+EDV +LK L+L NPV+LKL+ + SQL Y I +E++K ++YTLLKL LV+GKT
Sbjct: 198 TEDVQALKELLLHNPVVLKLQGSQLPDSSQLQQYTIKCEEEDKFLLVYTLLKLQLVRGKT 257
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
++FV VD+ Y+LKL+LEQF I CVLNSELP ++RCH + QFNQG YD+IIA+DE++L
Sbjct: 258 LLFVGAVDRSYRLKLFLEQFSIPACVLNSELPVQSRCHIITQFNQGFYDIIIATDEQSLS 317
Query: 330 TPQINSTNNRKRK---------RDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRT 380
P +S K K +DKE GVSRG+DFQ V+NVINFDFP ++ YIHR GRT
Sbjct: 318 PPAGSSQTKGKEKKNADKGGKAKDKEFGVSRGVDFQNVANVINFDFPTTVESYIHRVGRT 377
Query: 381 ARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQ 440
AR NQG TALSF+S E L+ +V E L T+ E ++KPYQ
Sbjct: 378 ARADNQG-----------------TALSFISHTELPLLVEVEEALSTDNAES--VLKPYQ 418
Query: 441 FNLDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHD 475
F ++E++GF YR +DA R+ YF+DNP DL+ LRHD
Sbjct: 419 FRMEEIEGFRYRCRDAMRAVTKQAVREARLKEIKQELLNSEKLKTYFDDNPRDLQLLRHD 478
Query: 476 KALYTVRIQSHLADVPDYIVPPALK 500
K L+ ++ H+ ++PDY++P L+
Sbjct: 479 KDLHPAVVKPHMKNIPDYLIPQTLR 503
>gi|195482299|ref|XP_002101990.1| GE15300 [Drosophila yakuba]
gi|194189514|gb|EDX03098.1| GE15300 [Drosophila yakuba]
Length = 560
Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust.
Identities = 261/502 (51%), Positives = 341/502 (67%), Gaps = 45/502 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+A+LGW +PTLIQ AIPL+L+ KDV+VRARTGSGKT +A+P+IQKI+N K A
Sbjct: 21 LKAVAQLGWQQPTLIQSTAIPLLLEGKDVVVRARTGSGKTATYALPLIQKILNSKLNASE 80
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQV-DVSVQEPLLVERPDIVV 148
Q A++L+P+KELC Q K I++L C + V+ DI+ D Q L ERPDIVV
Sbjct: 81 QCVSAVILAPTKELCRQSRKVIEQLVESCGKVVRVADIAGSSNDTVTQRHALAERPDIVV 140
Query: 149 ATPARALAHLKAKT-LDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
ATPA+ LAH +A + +DLK +E +++DEADLVF+FGYE D K ++K LP +YQA+L SA
Sbjct: 141 ATPAKLLAHAEAGSVVDLK-HVETLVVDEADLVFAFGYEKDFKRLIKHLPPIYQAVLVSA 199
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
TL++DV+ +K L L NPV LKLEEP + QL H ILA+E++K +ILY LLKL L++G
Sbjct: 200 TLTDDVVRMKGLCLNNPVTLKLEEPEVVSQDQLTHQRILAEENDKPSILYALLKLRLIRG 259
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
K+IIFVN++D+CYK++L+LEQF I CVLNSELPA R H + QFN+G YD+IIASDE
Sbjct: 260 KSIIFVNSIDRCYKVRLFLEQFGIRACVLNSELPANIRIHTISQFNKGTYDIIIASDEHH 319
Query: 328 LETPQINSTNNRK--RKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKN 385
LE P S NRK R D ES SRGIDFQ V+NVINFDFP D+ YIHRAGRTARG N
Sbjct: 320 LEQPGGKSATNRKSPRSGDMESSASRGIDFQCVNNVINFDFPRDVTSYIHRAGRTARGNN 379
Query: 386 QGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDE 445
+G+ LSFVS++E + ND E+ L + E + IIK YQF ++E
Sbjct: 380 KGSVLSFVSMKEAKV-NDAV--------EKKLCDSFAA------QEGEQIIKNYQFKMEE 424
Query: 446 VKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKALYT 480
V+ F YRA+D WR+ +FE+N DL+ LRHDK L
Sbjct: 425 VESFRYRAQDCWRAATRVAVHDTRIREIKTEILNCEKLKGFFEENKRDLQALRHDKPLRA 484
Query: 481 VRIQSHLADVPDYIVPPALKKL 502
+++QSHL+D+P+YIVP ALK++
Sbjct: 485 IKVQSHLSDMPEYIVPKALKRV 506
>gi|194897631|ref|XP_001978693.1| GG17541 [Drosophila erecta]
gi|190650342|gb|EDV47620.1| GG17541 [Drosophila erecta]
Length = 559
Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust.
Identities = 262/502 (52%), Positives = 340/502 (67%), Gaps = 45/502 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+A+LGW +PTLIQ AIPL+L+ KDV+VRARTGSGKT +A+P+IQKI+N K A
Sbjct: 21 LKAVAQLGWQQPTLIQSTAIPLLLEGKDVVVRARTGSGKTATYALPLIQKILNSKLNASE 80
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQV-DVSVQEPLLVERPDIVV 148
Q A+VL+P+KELC Q K I++L C + V+ DI+ D Q L ERPDIVV
Sbjct: 81 QCVSAVVLAPTKELCRQSRKVIEQLVESCGKVVRVADIAGSSNDTVTQRHALAERPDIVV 140
Query: 149 ATPARALAHLKAKT-LDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
ATPA+ LAH +A + +DLK +E +++DEADLVF+FGYE D K ++K LP +YQA+L SA
Sbjct: 141 ATPAKLLAHAEAGSVVDLK-HVETLVVDEADLVFAFGYEKDFKRLIKHLPPIYQAVLVSA 199
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
TL++DV+ +K L L NPV LKLEEP + QL H ILA+E++K ILY LLKL L++G
Sbjct: 200 TLTDDVVRMKGLCLNNPVTLKLEEPEVVSQDQLTHQRILAEENDKPAILYALLKLRLIRG 259
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
K+IIFVN++D+CYK++L+LEQF I CVLNSELPA R H + QFN+G YD+IIASDE
Sbjct: 260 KSIIFVNSIDRCYKVRLFLEQFGIRACVLNSELPANIRIHTISQFNKGTYDIIIASDEHH 319
Query: 328 LETPQINSTNNRK--RKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKN 385
LE P S NRK R D ES SRGIDFQ V+NVINFDFP D+ YIHRAGRTARG N
Sbjct: 320 LEQPGGKSATNRKSPRSGDMESSASRGIDFQCVNNVINFDFPRDVTSYIHRAGRTARGNN 379
Query: 386 QGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDE 445
+G+ LSFVS++E + ND E+ L + E + IIK YQF ++E
Sbjct: 380 KGSVLSFVSMKEAKV-NDAV--------EKKLCDSFAA------QEGEQIIKNYQFKMEE 424
Query: 446 VKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKALYT 480
V+ F YRA+D WR+ +FE+N DL+ LRHDK L
Sbjct: 425 VESFRYRAQDCWRAATRVAVHDTRIREIKTEILNCEKLKGFFEENKRDLQALRHDKPLRA 484
Query: 481 VRIQSHLADVPDYIVPPALKKL 502
+++QSHL+D+P+YIVP ALK++
Sbjct: 485 IKVQSHLSDMPEYIVPKALKRV 506
>gi|410903870|ref|XP_003965416.1| PREDICTED: probable ATP-dependent RNA helicase DDX56-like [Takifugu
rubripes]
Length = 563
Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust.
Identities = 259/513 (50%), Positives = 344/513 (67%), Gaps = 59/513 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+A LGW +PTLIQE+AIPL L+ KD+L RARTGSGKT A+A+P+IQ+I+ KQ+ +
Sbjct: 18 LKAVADLGWSQPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAVPVIQRILASKQSVRE 77
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
Q+ KAL+L P+KEL Q+ I++LT CSRDV+ D+S + DVS Q P+L+E+PDIVV
Sbjct: 78 QDVKALILVPTKELGQQVQTMIRQLTAFCSRDVRVADVSGKADVSTQRPILMEKPDIVVG 137
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP+R LAHL A+ L L SSLE++++DEADL+FSFG+E D+K +L LPK+YQ+ L SATL
Sbjct: 138 TPSRILAHLNAQNLLLHSSLEMLVVDEADLLFSFGFEADLKNLLCHLPKIYQSFLMSATL 197
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
SEDV SLK L+L NP+ILKL+ + SQL Y I +E++K ++YTLLKL LVQGKT
Sbjct: 198 SEDVQSLKELLLHNPIILKLQGSQLPDSSQLQQYSINCEEEDKFLLIYTLLKLRLVQGKT 257
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
++FV VD+ Y+LKL+LEQF I TCVLNSELP +RCH + QFNQG YD IIA+DE++L
Sbjct: 258 LLFVGAVDRSYRLKLFLEQFGIPTCVLNSELPVGSRCHIISQFNQGFYDYIIAADEESLA 317
Query: 330 TP-------------QINSTNNRK--RKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYI 374
P N+ K + +DKE GVSRG+DFQ VSNVINFDFP ++ YI
Sbjct: 318 VPAEGAASAEAAAGKGKKKKNSEKAGKSKDKEFGVSRGVDFQNVSNVINFDFPTTVESYI 377
Query: 375 HRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDF 434
HR GRTAR N GTALSF+S +E L++D E +T H
Sbjct: 378 HRVGRTARADNPGTALSFISHKEVALLSD------------------VEEALTGDHSGS- 418
Query: 435 IIKPYQFNLDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDL 469
++KPY+F ++E++GF YR +DA RS YFEDNP DL
Sbjct: 419 VLKPYKFKMEEIEGFRYRCRDAMRSVTKQAVREARLKEIKQELLNSEKLKTYFEDNPRDL 478
Query: 470 ETLRHDKALYTVRIQSHLADVPDYIVPPALKKL 502
+ LRHDK L+ ++ HL ++PDY++P L+ +
Sbjct: 479 QLLRHDKDLHPAVVKPHLRNLPDYLIPDTLRNV 511
>gi|195132612|ref|XP_002010737.1| GI21708 [Drosophila mojavensis]
gi|193907525|gb|EDW06392.1| GI21708 [Drosophila mojavensis]
Length = 566
Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust.
Identities = 263/506 (51%), Positives = 344/506 (67%), Gaps = 41/506 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AIA+LGW++PTLIQ AIPL+L+ KDV+VRARTGSGKT +A+P+IQKI+N K +
Sbjct: 20 LKAIAQLGWVQPTLIQSTAIPLLLEGKDVVVRARTGSGKTATYALPLIQKILNSKLNSSE 79
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQV-DVSVQEPLLVERPDIVV 148
Q ALVL P+KELC Q + I++L+ C + V+ DI+ D + Q L ERPDIVV
Sbjct: 80 QCVSALVLCPTKELCRQSRQVIEQLSDSCGKVVRVTDIAGSSNDAATQRHALAERPDIVV 139
Query: 149 ATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
+TPA+ LAH A +DLK +E +++DEADL+F+FGYE D K ++K LP +YQA+L SAT
Sbjct: 140 STPAKILAH--ADIVDLKH-IETLVVDEADLIFAFGYEKDFKKLIKLLPPIYQAVLVSAT 196
Query: 209 LSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGK 268
+S+DV +K L L N V LKLEEP + + QL+H+ ILA+E+EK ILY LLKL L+QGK
Sbjct: 197 ISDDVARMKGLCLHNAVTLKLEEPDLVSLDQLSHHRILAEENEKPAILYALLKLMLIQGK 256
Query: 269 TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL 328
+IIFVN VD+CYK++L+LEQF I +CVLNSELPA R H + QFN+G+YD+IIASDE L
Sbjct: 257 SIIFVNNVDRCYKVRLFLEQFGIRSCVLNSELPANIRIHTINQFNRGVYDIIIASDEHLL 316
Query: 329 ETPQINSTN-NRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQG 387
E P + N ++K D ES SRGIDFQ V+NVINFDFP D+ YIHRAGRTARG N+G
Sbjct: 317 EKPAGKTKNKGGQQKNDHESSASRGIDFQGVNNVINFDFPRDVTSYIHRAGRTARGNNKG 376
Query: 388 TALSFVSLREQDLMNDGTALSFVSLREQ-----DLMNDVNEYLMTNLHEDDFIIKPYQFN 442
+ LSFVS++E + +SL +Q D ++D + N IIKPYQF
Sbjct: 377 SVLSFVSIKEAPINQAVEEKLRISLGKQPHLTVDALSDQPQKPTEN------IIKPYQFK 430
Query: 443 LDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKA 477
L+EV+ F YRA D WR+ +FE+N DL LRHDK
Sbjct: 431 LEEVEAFRYRANDCWRAATRVAVHDTRIKEIKTEILNCEKLKGFFEENKRDLMALRHDKP 490
Query: 478 LYTVRIQSHLADVPDYIVPPALKKLA 503
T+++QSHLA VP+YI+P ALK++A
Sbjct: 491 SRTLKVQSHLAHVPEYILPSALKRVA 516
>gi|24643725|ref|NP_523434.2| helicase [Drosophila melanogaster]
gi|3378056|gb|AAC28406.1| helicase [Drosophila melanogaster]
gi|17944409|gb|AAL48095.1| RE72861p [Drosophila melanogaster]
gi|22833199|gb|AAF50818.2| helicase [Drosophila melanogaster]
Length = 560
Score = 506 bits (1303), Expect = e-140, Method: Compositional matrix adjust.
Identities = 259/502 (51%), Positives = 341/502 (67%), Gaps = 45/502 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+A+LGW +PTLIQ AIPL+L+ KDV+VRARTGSGKT +A+P+IQKI+N K A
Sbjct: 21 LKAVAQLGWQQPTLIQSTAIPLLLEGKDVVVRARTGSGKTATYALPLIQKILNSKLNASE 80
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQV-DVSVQEPLLVERPDIVV 148
Q A+VL+P+KELC Q K I++L C + V+ DI++ D Q L E PDIVV
Sbjct: 81 QYVSAVVLAPTKELCRQSRKVIEQLVESCGKVVRVADIADSSNDTVTQRHALSESPDIVV 140
Query: 149 ATPARALAHLKAKTL-DLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
ATPA LA+ +A ++ DLK +E +++DEADLVF++GYE D K ++K LP +YQA+L SA
Sbjct: 141 ATPANLLAYAEAGSVVDLKH-VETLVVDEADLVFAYGYEKDFKRLIKHLPPIYQAVLVSA 199
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
TL++DV+ +K L L NPV LKLEEP + P QL+H ILA+E++K ILY LLKL L++G
Sbjct: 200 TLTDDVVRMKGLCLNNPVTLKLEEPELVPQDQLSHQRILAEENDKPAILYALLKLRLIRG 259
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
K+IIFVN++D+CYK++L+LEQF I CVLNSELPA R H + QFN+G YD+IIASDE
Sbjct: 260 KSIIFVNSIDRCYKVRLFLEQFGIRACVLNSELPANIRIHTISQFNKGTYDIIIASDEHH 319
Query: 328 LETPQINSTNNRK--RKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKN 385
+E P S NRK R D ES SRGIDFQ V+NVINFDFP D+ YIHRAGRTARG N
Sbjct: 320 MEKPGGKSATNRKSPRSGDMESSASRGIDFQCVNNVINFDFPRDVTSYIHRAGRTARGNN 379
Query: 386 QGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDE 445
+G+ LSFVS++E + ND E+ L + E + IIK YQF ++E
Sbjct: 380 KGSVLSFVSMKESKV-NDSV--------EKKLCDSFAA------QEGEQIIKNYQFKMEE 424
Query: 446 VKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKALYT 480
V+ F YRA+D WR+ +FE+N DL+ LRHDK L
Sbjct: 425 VESFRYRAQDCWRAATRVAVHDTRIREIKIEILNCEKLKAFFEENKRDLQALRHDKPLRA 484
Query: 481 VRIQSHLADVPDYIVPPALKKL 502
+++QSHL+D+P+YIVP ALK++
Sbjct: 485 IKVQSHLSDMPEYIVPKALKRV 506
>gi|95132450|gb|AAI16543.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 [Danio rerio]
gi|182891866|gb|AAI65407.1| Ddx56 protein [Danio rerio]
Length = 557
Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust.
Identities = 255/508 (50%), Positives = 346/508 (68%), Gaps = 54/508 (10%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+A LGW +PTLIQE+AIPL+L+ KD+L RARTGSGKT A+A+P+IQ+++ KQT +
Sbjct: 18 LKALADLGWSQPTLIQEKAIPLVLEGKDLLARARTGSGKTAAYAVPLIQRVLTSKQTVRE 77
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
Q +A+VL P+KEL Q+ I++LT+ CSRDV+ DIS + D+S Q+P+L+E+PDIVV+
Sbjct: 78 QAVRAVVLVPTKELGQQVQTMIRQLTVYCSRDVRVADISGKADLSAQKPILMEKPDIVVS 137
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP+R AH+ A+ L L SSLE+++IDEADL+FSFG+E D+K +L LPK+YQA L SATL
Sbjct: 138 TPSRIQAHINAQNLQLHSSLEMLVIDEADLLFSFGFEADLKNLLCHLPKIYQAFLMSATL 197
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
++DV +LK L+L NPV LKL+ + SQL + I +E++K ++YT+LKL L+QGKT
Sbjct: 198 NDDVQALKELVLHNPVTLKLQGSQLPDSSQLQQFSIKCEEEDKFLLIYTMLKLGLIQGKT 257
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
++FV+ VD+ Y+LKL+LEQF I CVLNSELP +RCH + QFNQG Y+ IIASDE+ LE
Sbjct: 258 LLFVSDVDRSYRLKLFLEQFSIPACVLNSELPVHSRCHIISQFNQGFYNYIIASDEQGLE 317
Query: 330 TPQINSTNNRK----------RKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGR 379
+P +S ++ + +DKE GVSRGIDF VSNVINFDFP ++ YIHR GR
Sbjct: 318 SPAGSSQKTQEKGNKKKGTGKKGKDKEYGVSRGIDFHNVSNVINFDFPTSVESYIHRVGR 377
Query: 380 TARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPY 439
TAR N GTALSF+S E LS +S E L D N + ++KPY
Sbjct: 378 TARADNPGTALSFISHAE---------LSMLSEVENALTGDSN----------NCVLKPY 418
Query: 440 QFNLDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRH 474
+F ++E++GF YR +D RS YFEDNP DL+ LRH
Sbjct: 419 EFRMEEIEGFRYRCRDGMRSVTKQAVKEARLKEIKQELLNSEKLKTYFEDNPRDLQLLRH 478
Query: 475 DKALYTVRIQSHLADVPDYIVPPALKKL 502
DK L+ I+ H+ +VP+Y++P ALK L
Sbjct: 479 DKDLHPAIIKPHMKNVPEYLIPTALKSL 506
>gi|390356945|ref|XP_790864.3| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
DDX56-like [Strongylocentrotus purpuratus]
Length = 559
Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust.
Identities = 263/507 (51%), Positives = 348/507 (68%), Gaps = 56/507 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+AKLGW PTLIQE+AIPL L+ KD+L RARTGSGKT A+AIP++QKI+ LK+TA+
Sbjct: 23 LKALAKLGWSSPTLIQEKAIPLALEGKDILARARTGSGKTAAYAIPLVQKILTLKETARE 82
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
Q T+AL+L PS+ELC+Q KNIQE++ CS+++KC D+S QVD+S Q PLL+ERPDIV+
Sbjct: 83 QATRALILVPSRELCSQAFKNIQEISKCCSKEIKCADVSGQVDLSAQRPLLMERPDIVLG 142
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP+R LAH++AK L L++SLE+++IDEADLVFSFG+E DM+A+L PK+YQAIL SATL
Sbjct: 143 TPSRILAHIQAKNLSLQNSLEMLVIDEADLVFSFGHEADMRALLSHFPKIYQAILMSATL 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
SEDV +LK L+L NP+ LKL E + +L+ Y + E++K ++YTLLKL L++GKT
Sbjct: 203 SEDVKTLKKLVLHNPITLKLAESQLPEADRLSQYQVRCIEEDKYLLIYTLLKLKLIRGKT 262
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL- 328
IIFVN++D+CY+LKLYLEQF + C+LNSELP +RCH V QFN GLYD+I+AS+E +L
Sbjct: 263 IIFVNSIDRCYRLKLYLEQFSVPVCLLNSELPVNSRCHIVNQFNTGLYDIIVASEESSLF 322
Query: 329 ETPQINSTNNRKRKRDKES-------GVSRGIDFQFVSNVINFDFPLDIQCYIHR---AG 378
+ + + RK K+ K GVSRGIDF NV NF F DI I
Sbjct: 323 DGGKRDEAEERKEKKGKGQKXKDKEYGVSRGIDFHNQQNVNNFMFD-DIHLNIKMLLLIC 381
Query: 379 RTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKP 438
RTARG+ GTALSFV+ +EQDL+++ EQ+L+ D + +IKP
Sbjct: 382 RTARGEKMGTALSFVNEQEQDLLDN---------VEQELIGD----------DGTPLIKP 422
Query: 439 YQFNLDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLR 473
YQF + E++GF YRAKDA R+ YFEDNP DL+ LR
Sbjct: 423 YQFKMSEIEGFRYRAKDAMRAVTKVAVREARVKEIKQEIFNSKKLKAYFEDNPRDLQLLR 482
Query: 474 HDKALYTVRIQSHLADVPDYIVPPALK 500
HDK L ++ S L +VP+Y+VP AL+
Sbjct: 483 HDKILQRAKVHSDLKNVPEYVVPKALR 509
>gi|51467996|ref|NP_001003876.1| probable ATP-dependent RNA helicase DDX56 [Danio rerio]
gi|49619091|gb|AAT68130.1| DEAD/H box 56 RNA helicase/noh61 [Danio rerio]
Length = 557
Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust.
Identities = 253/508 (49%), Positives = 343/508 (67%), Gaps = 54/508 (10%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+A LGW +PTLIQE+AIPL L+ KD+L RARTGSGKT A+A+P+IQ+++ KQT +
Sbjct: 18 LKALADLGWSQPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAVPLIQRVLTSKQTVRE 77
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
Q +A+VL P+KEL Q+ I++LT CSRDV+ DIS + D+S Q+P+L+E+PDIVV+
Sbjct: 78 QAVRAVVLVPTKELGQQVQTMIRQLTAYCSRDVRVADISGKADLSAQKPILMEKPDIVVS 137
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP+R AH+ A+ L L SSLE+++IDEADL+FSFG+E D+K +L LPK+YQA L SATL
Sbjct: 138 TPSRIQAHINAQNLQLHSSLEMLVIDEADLLFSFGFEADLKNLLCHLPKIYQAFLMSATL 197
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
++DV +LK L+L NPV LKL+ + SQL + I +E++K ++YT+LKL L+QGKT
Sbjct: 198 NDDVQALKELVLHNPVTLKLQGSQLPDSSQLQQFSIKCEEEDKFLLIYTMLKLGLIQGKT 257
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
++FV+ VD+ Y+LKL+LEQF I CVLNSELP +RCH + QFNQG Y+ IIASDE+ LE
Sbjct: 258 LLFVSDVDRSYRLKLFLEQFSIPACVLNSELPVHSRCHIISQFNQGFYNYIIASDEQGLE 317
Query: 330 TPQINSTNNRKRKRDKES----------GVSRGIDFQFVSNVINFDFPLDIQCYIHRAGR 379
+P +S +++ + K+ GVSRGIDF VSNVINFDFP ++ YIHR GR
Sbjct: 318 SPAGSSQKTQEKGKKKKGTGKKGKDKEYGVSRGIDFHNVSNVINFDFPTSVESYIHRVGR 377
Query: 380 TARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPY 439
TAR N GTALSF+S E LS +S E L D N + ++KPY
Sbjct: 378 TARADNPGTALSFISHAE---------LSMLSEVENALTGDSN----------NCVLKPY 418
Query: 440 QFNLDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRH 474
+F ++E++GF YR +D RS YFEDNP DL+ LRH
Sbjct: 419 EFRMEEIEGFRYRCRDGMRSVTKQAVKEARLKEIKQELLNSEKLKTYFEDNPRDLQLLRH 478
Query: 475 DKALYTVRIQSHLADVPDYIVPPALKKL 502
DK L+ I+ H+ +VP+Y++P ALK L
Sbjct: 479 DKDLHPAIIKPHMKNVPEYLIPTALKSL 506
>gi|195399387|ref|XP_002058302.1| GJ15568 [Drosophila virilis]
gi|194150726|gb|EDW66410.1| GJ15568 [Drosophila virilis]
Length = 564
Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust.
Identities = 262/502 (52%), Positives = 341/502 (67%), Gaps = 34/502 (6%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AIA+LGW++PTLIQ AIPL+L+ KDV+VRARTGSGKT +A+P+IQKI+N K A
Sbjct: 20 LKAIAQLGWVQPTLIQSTAIPLLLEGKDVVVRARTGSGKTATYALPLIQKILNSKMNASE 79
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQV-DVSVQEPLLVERPDIVV 148
Q ALVL P+KELC Q + I++L C + V+ DI+ DV+ Q L ERPDIVV
Sbjct: 80 QRVSALVLCPTKELCRQSRQVIEQLAESCGKVVRVADIAGSSNDVATQRHALAERPDIVV 139
Query: 149 ATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
ATP++ LAH A +DL+ +E +++DEADL+F+FGYE D K ++K LP +YQA+L SAT
Sbjct: 140 ATPSKLLAH--ADVVDLQH-IETLVVDEADLIFAFGYEKDFKRLIKHLPPIYQAVLVSAT 196
Query: 209 LSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGK 268
+S+DV +K L L N V LKLEEP + + QL+H ILA+E++K IL LLKL L+QGK
Sbjct: 197 ISDDVARMKGLCLHNAVTLKLEEPDLVSLDQLSHQRILAEENDKPAILCALLKLTLIQGK 256
Query: 269 TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL 328
+IIFVN VD+CYK++L+LEQF I +CVLNSELPA R H + QFN+G+YD+IIASDE L
Sbjct: 257 SIIFVNNVDRCYKVRLFLEQFGIRSCVLNSELPANIRIHTISQFNRGVYDIIIASDEHLL 316
Query: 329 ETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGT 388
E P + K +RD ES SRGIDFQ V+NVINFDFP D+ YIHRAGRTARG N+G+
Sbjct: 317 EKPAGQKAKD-KSQRDHESSASRGIDFQGVNNVINFDFPRDVTSYIHRAGRTARGNNKGS 375
Query: 389 ALSFVSLREQDLMNDGTALSFVSL-REQDLMND-VNEYLMTNLHEDDFIIKPYQFNLDEV 446
LSFVS++E + SL +E L D +++ ED IIK YQF ++EV
Sbjct: 376 VLSFVSIKELPVNQAVEERLRCSLGKEPHLTVDALSDEPQKPAVED--IIKLYQFKMEEV 433
Query: 447 KGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKALYTV 481
+ F YRA+D WR+ +FE+N DL LRHDK T+
Sbjct: 434 EAFRYRAQDCWRAATRVAVHDTRIREIKNEILNCEKLKGFFEENKRDLLALRHDKPARTI 493
Query: 482 RIQSHLADVPDYIVPPALKKLA 503
++QSHLA VPDYI+P ALK++A
Sbjct: 494 KVQSHLAHVPDYILPSALKRVA 515
>gi|348504260|ref|XP_003439680.1| PREDICTED: probable ATP-dependent RNA helicase DDX56-like
[Oreochromis niloticus]
Length = 560
Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust.
Identities = 253/507 (49%), Positives = 343/507 (67%), Gaps = 55/507 (10%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+A LGW +PTLIQE+ IPL L KD+L RARTGSGKT ++ IP+IQ+I+ KQ +
Sbjct: 18 LKAVADLGWSKPTLIQEKVIPLALDGKDLLARARTGSGKTASYGIPVIQRILASKQNVRE 77
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
Q+ +AL++ P+KEL +Q+ +++LT CSRD++ DIS +VD+S Q P+L+E+PD+VV
Sbjct: 78 QDVRALIVVPTKELGHQVQIMMRQLTAYCSRDIRVADISSKVDLSTQRPILMEKPDVVVG 137
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP+R LAHL A+ L L+SSLE++++DEADL+FSFG+E D+K +L LP +YQ+ L SAT
Sbjct: 138 TPSRVLAHLNAQNLVLRSSLEMLVVDEADLIFSFGFESDLKNLLCHLPNIYQSFLMSATF 197
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+EDV +LK L+L NPVILKL+ + SQL Y I +E++K ++YTLLKL LV+GKT
Sbjct: 198 NEDVQTLKELLLHNPVILKLQGSQLPDSSQLQQYSIKCEEEDKFLLVYTLLKLCLVKGKT 257
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL- 328
++FV TVD+CY+LKL+LEQF I CVLNSELP ++RCH + QFNQG YD IIA+DE++L
Sbjct: 258 LLFVGTVDRCYRLKLFLEQFGIPACVLNSELPVQSRCHIIAQFNQGFYDYIIATDEQSLT 317
Query: 329 ET---PQINS-------TNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAG 378
ET PQ + + +DKE GVSRG+DFQ V+NVINFDFP ++ YIHR G
Sbjct: 318 ETAAEPQTTAGKEKKKTQKKGGKAKDKEYGVSRGVDFQNVANVINFDFPKTVESYIHRVG 377
Query: 379 RTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKP 438
RTAR N GTALSFVS T L +S E+ L D E + +KP
Sbjct: 378 RTARADNPGTALSFVS---------HTELGLLSEVEEALTGD----------ETNSPLKP 418
Query: 439 YQFNLDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLR 473
Y+F +++++GF YR +DA RS YFEDNP DL+ LR
Sbjct: 419 YEFKMEQIEGFRYRCRDAMRSVTKQAVKEARLKEIKQELLNSEKLKTYFEDNPRDLQLLR 478
Query: 474 HDKALYTVRIQSHLADVPDYIVPPALK 500
HDK L+ ++ HL +VP+Y++P ALK
Sbjct: 479 HDKDLHPAVVKPHLKNVPEYLIPEALK 505
>gi|195568017|ref|XP_002107552.1| GD15498 [Drosophila simulans]
gi|194204962|gb|EDX18538.1| GD15498 [Drosophila simulans]
Length = 557
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 255/505 (50%), Positives = 337/505 (66%), Gaps = 54/505 (10%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+A+LGW +PTLIQ AIPL+L+ KDV+VRARTGSGKT +A+P+IQKI+N K A
Sbjct: 21 LKAVAQLGWQQPTLIQSTAIPLLLEGKDVVVRARTGSGKTATYALPLIQKILNSKLNASE 80
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQV-DVSVQEPLLVERPDIVV 148
Q A+VL+P+KELC Q K I++L C + V+ DI++ D Q L E PDIVV
Sbjct: 81 QYVSAVVLAPTKELCRQSRKVIEQLVESCGKVVRVADIADSSNDTVTQRHALSENPDIVV 140
Query: 149 ATPARALAHLKAK-TLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
ATPA LA+ +A+ +DLK +E +++DEADLVF++GYE D K ++K LP +YQA+L SA
Sbjct: 141 ATPANLLAYAEARGVVDLKH-VETLVVDEADLVFAYGYEKDFKRLIKHLPPIYQAVLVSA 199
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
TL++DV+ +K L L+NPV LKLEEP + P QL H ILA+E++K ILY LLKL L++G
Sbjct: 200 TLTDDVVRMKGLCLKNPVTLKLEEPELVPQDQLTHQRILAEENDKPAILYALLKLRLIRG 259
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
K+IIFVN++D+CYK++L+LEQF I CVLNSELPA R H + QFN+G Y++IIASDE
Sbjct: 260 KSIIFVNSIDRCYKVRLFLEQFGIRACVLNSELPANIRIHTISQFNKGTYNIIIASDEHH 319
Query: 328 LETPQINSTNNRK--RKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKN 385
+E P NRK R D ES SRGIDFQ V+NVINFDFP D+ YIHRAGRTARG N
Sbjct: 320 MEKP---GGTNRKSPRSGDMESSASRGIDFQCVNNVINFDFPRDVTSYIHRAGRTARGNN 376
Query: 386 QGTALSFVSLRE---QDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFN 442
+G+ LSFVS +E DL+ SF + E + I+K YQF
Sbjct: 377 KGSVLSFVSTKEAKVNDLVAKKLCDSFAA------------------QEGEEIMKNYQFK 418
Query: 443 LDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKA 477
++EV+ F YRA+D WR+ +FE+N DL+ LRHDK
Sbjct: 419 MEEVESFRYRAQDCWRAATRVAVHDTRIREIKTEILNCEKLKGFFEENKRDLQALRHDKP 478
Query: 478 LYTVRIQSHLADVPDYIVPPALKKL 502
L +++ SHL+D+P+YIVP ALK++
Sbjct: 479 LRAIKVHSHLSDMPEYIVPKALKRV 503
>gi|194763885|ref|XP_001964063.1| GF21359 [Drosophila ananassae]
gi|190618988|gb|EDV34512.1| GF21359 [Drosophila ananassae]
Length = 567
Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust.
Identities = 257/514 (50%), Positives = 333/514 (64%), Gaps = 64/514 (12%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+A+LGW +PTLIQ AIPL+L+ KDV+VRARTGSGKT +A+P+IQKI+N K A
Sbjct: 21 LKAVAQLGWQQPTLIQSTAIPLLLEGKDVVVRARTGSGKTATYALPLIQKILNSKLNASE 80
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDIS-EQVDVSVQEPLLVERPDIVV 148
Q A+VL+P+KELC Q I++L C + ++ DI+ D + Q L ERPDIVV
Sbjct: 81 QCVSAVVLAPTKELCRQSRAVIEQLAESCGKVIRVADIAGSSSDAATQRHALAERPDIVV 140
Query: 149 ATPARALAHLKAK-TLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
+TP++ L H A +DLK +E +++DEADL+F+FGYE D K ++K P +YQAIL SA
Sbjct: 141 STPSKLLNHADAGGVVDLKY-VETLVVDEADLMFAFGYEKDFKKLIKHFPPIYQAILVSA 199
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
TLS+DV+ +K L L NPV LKLEEP + P QL H ILA+E++K ILY LLKL LV+G
Sbjct: 200 TLSDDVVRMKGLCLNNPVTLKLEEPELVPQDQLTHQRILAEENDKPAILYALLKLRLVRG 259
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
KTIIFVN +D+CYK++L+LEQF I CVLNSELPA R H + QFN+G YD+IIASDE
Sbjct: 260 KTIIFVNNIDRCYKVRLFLEQFGIRACVLNSELPANIRIHTISQFNKGTYDIIIASDEHH 319
Query: 328 LETPQINSTNNRK---------RKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAG 378
LE P S+ R D ES SRGIDFQ V+NV+NFDFP D+ YIHRAG
Sbjct: 320 LEQPGGKSSAASSSSSGKRKSPRSGDFESSASRGIDFQCVNNVLNFDFPRDVTSYIHRAG 379
Query: 379 RTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLH------ED 432
RTARG N+G+ LSFVS++E VN+ + LH E
Sbjct: 380 RTARGNNKGSVLSFVSMKEA---------------------AVNDAVEKKLHSTFAAQEG 418
Query: 433 DFIIKPYQFNLDEVKGFEYRAKDAWRS-------------------------NYFEDNPT 467
+ IIK YQF ++EV+ F YRA+D WR+ +FE+N
Sbjct: 419 EQIIKNYQFKMEEVESFRYRAQDCWRAATRVAVHDTRIREIKTEILNCEKLKGFFEENKR 478
Query: 468 DLETLRHDKALYTVRIQSHLADVPDYIVPPALKK 501
DL+ LRHDK L T+++Q+HL+D+PDYIVP ALK+
Sbjct: 479 DLQALRHDKPLKTIKVQNHLSDMPDYIVPKALKR 512
>gi|195173765|ref|XP_002027657.1| GL15985 [Drosophila persimilis]
gi|198470361|ref|XP_001355297.2| GA14086 [Drosophila pseudoobscura pseudoobscura]
gi|194114592|gb|EDW36635.1| GL15985 [Drosophila persimilis]
gi|198145414|gb|EAL32354.2| GA14086 [Drosophila pseudoobscura pseudoobscura]
Length = 558
Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust.
Identities = 261/511 (51%), Positives = 338/511 (66%), Gaps = 44/511 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A++KLGW +PTLIQ AIPL+L+ KDV+VRARTGSGKT +A+P+IQKI+N K TA
Sbjct: 20 LKAVSKLGWEQPTLIQGTAIPLLLEGKDVVVRARTGSGKTATYALPLIQKILNSKLTATE 79
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQE-PLLVERPDIVV 148
Q A+VL+P+KELC Q I++L C + V+ DIS +V E L ERPDIVV
Sbjct: 80 QCVSAVVLAPTKELCRQSRAVIEQLAEYCHKVVRVADISGTTSNTVTERHALAERPDIVV 139
Query: 149 ATPARALAHLKA-KTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
ATPA+ L H KA +DLK +E +++DEADL+F+FGYE D KA+LK LP +YQ++L SA
Sbjct: 140 ATPAKLLNHAKADGVVDLK-KVETLVVDEADLIFAFGYEMDFKALLKHLPSIYQSVLVSA 198
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
TLS+DV+ +K L L NPV LKLEEP + QL H ILA+E++K ILY LLKL L++G
Sbjct: 199 TLSDDVVRMKGLCLHNPVTLKLEEPDVVSQDQLTHQRILAEENDKPVILYALLKLQLIRG 258
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
KTIIFVNT+D+ YK++L+LEQF I CVLN +LPA R + + QFN+G YD+IIASD+
Sbjct: 259 KTIIFVNTIDRSYKIRLFLEQFGIRACVLNPQLPASIRINMISQFNKGTYDIIIASDQHY 318
Query: 328 LETPQINSTNNRKRKR-DKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQ 386
LE P S + RK R D ES SRGIDFQ V+NVINFDFPLD+ YIHRAGRTARG N+
Sbjct: 319 LERPDNGSQDKRKSTRGDFESSASRGIDFQSVNNVINFDFPLDVTSYIHRAGRTARGNNK 378
Query: 387 GTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEV 446
G+ LS VS++E + ND E+ L + + + D IIK YQF +DE+
Sbjct: 379 GSVLSLVSIKESGV-NDAV--------EKKLR------ITFSAKKGDTIIKNYQFKMDEL 423
Query: 447 KGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKALYTV 481
+ F YRA DAWR+ YFED+ DL LRHDK L +
Sbjct: 424 ESFRYRAYDAWRAASRAAVQETRLREIKTEVLNSVKLKGYFEDHQRDLNALRHDKPLRIL 483
Query: 482 RIQSHLADVPDYIVPPALKKLARIEDDGDED 512
+ SHL+D+P+Y+VP LK++ + G D
Sbjct: 484 KTPSHLSDMPEYMVPKVLKRVVVSKASGPAD 514
>gi|291228064|ref|XP_002734002.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 56-like
[Saccoglossus kowalevskii]
Length = 566
Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust.
Identities = 261/527 (49%), Positives = 341/527 (64%), Gaps = 82/527 (15%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AIA+LGW +PTLIQERAIPL L+ KD+L RARTGSGKT AFAIP+IQ+I+ KQTA
Sbjct: 21 LKAIAQLGWAKPTLIQERAIPLALEGKDLLARARTGSGKTAAFAIPLIQRILISKQTATE 80
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
Q KAL+L+PSKEL NQ +IQ T S+ + + V PLL+E+PDI+V
Sbjct: 81 QSIKALILTPSKELSNQASHHIQ--TPPKSQFHRSDFPKDSV-----RPLLIEKPDIIVG 133
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP+R LAH++AK + LK SLE+++IDEADL+FSFGYE+D+K +L+ LPK++QA L SATL
Sbjct: 134 TPSRVLAHIQAKNIYLKESLEMLVIDEADLLFSFGYENDVKTLLRHLPKIFQAFLMSATL 193
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
S +V +LK L+L NPVILKL+E + +L YHI + ++K ++YTL+KL L++GKT
Sbjct: 194 SNEVETLKKLVLHNPVILKLQESQLPESDRLLQYHIKCKAEDKFLLIYTLIKLKLIRGKT 253
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
IIFVN +D+CY+LKL+LEQF I++CVLNSELP +RCH V Q N+G YD++IASDE L
Sbjct: 254 IIFVNKIDRCYRLKLFLEQFSIASCVLNSELPVNSRCHIVNQVNEGFYDIVIASDESVLS 313
Query: 330 TP---------------QINSTNNRKR------------KRDKESGVSRGIDFQFVSNVI 362
P + + ++N+K+ K+ KE GVSRGIDFQ VSNV+
Sbjct: 314 MPDDKLDELDEIPDATVEADESDNKKKKRKGKKLSKTMMKKVKEYGVSRGIDFQNVSNVL 373
Query: 363 NFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVN 422
NFDFP + YIHR GRTARG GTALSFV+ E L+ +
Sbjct: 374 NFDFPPTVDAYIHRVGRTARGFKMGTALSFVNYSEIHLLQQAEMI--------------- 418
Query: 423 EYLMTNLHEDDFI--IKPYQFNLDEVKGFEYRAKDAWRS--------------------- 459
L DD + +KPYQF ++E++GF YRAKDA R+
Sbjct: 419 ------LSGDDEVPAVKPYQFKMEEIEGFRYRAKDAMRAVTKVAVKEARLQEIKNEIMNS 472
Query: 460 ----NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPPALKKL 502
YFEDNP DL+ LRHDK L+ ++QSHL VPDY+VP LK+L
Sbjct: 473 QKLKTYFEDNPRDLQLLRHDKVLHPAKVQSHLRHVPDYLVPDTLKQL 519
>gi|195047250|ref|XP_001992302.1| GH24281 [Drosophila grimshawi]
gi|193893143|gb|EDV92009.1| GH24281 [Drosophila grimshawi]
Length = 602
Score = 486 bits (1252), Expect = e-135, Method: Compositional matrix adjust.
Identities = 257/533 (48%), Positives = 346/533 (64%), Gaps = 61/533 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AIA+LGW++PTLIQ AIPL+L DV+VRARTGSGKT A+A+P+IQKI+N K A
Sbjct: 22 LKAIAQLGWVQPTLIQSTAIPLLLDGNDVVVRARTGSGKTAAYALPLIQKILNSKLNASE 81
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQV-DVSVQEPLLVERPDIVV 148
Q ALVL+P+KELC Q +++L C + ++ DI+ D++ Q L ERPDIVV
Sbjct: 82 QCVSALVLAPTKELCRQSRLVVEQLAESCGKVIRVADIAGSSNDMATQRHALAERPDIVV 141
Query: 149 ATPARALAHLKAKT--LDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
ATP++ LAH++A T +DL+ +E +++DEAD++F+FGYE D K ++K LP +YQAIL S
Sbjct: 142 ATPSKILAHVEAGTGIVDLQQ-IETLVVDEADMIFAFGYEKDFKRLMKHLPPIYQAILVS 200
Query: 207 ATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQ 266
AT+++DV+ +K L L+N + LKLEEP + + QL H ILA+E++K IL LLKL L+Q
Sbjct: 201 ATITDDVVRMKGLCLKNAITLKLEEPELVSLEQLTHQRILAEENDKPAILCALLKLTLIQ 260
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
GK+IIFVNTVD+CYK++L+LEQF I +CVLNSELPA R H + QFN+G YD+IIASDE
Sbjct: 261 GKSIIFVNTVDRCYKVRLFLEQFGIRSCVLNSELPANMRIHTISQFNRGTYDIIIASDEH 320
Query: 327 ALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQ 386
LE P T + + D ES SRGIDFQ V+NVINFDFP D+ YIHRAGRTARG N+
Sbjct: 321 ILEKPA-GKTQRKSQHSDHESSTSRGIDFQGVNNVINFDFPRDVTSYIHRAGRTARGNNK 379
Query: 387 GTALSFVSLRE-----------------QDLMNDGTALSFVSL------REQDLMNDVNE 423
G+ LSFVS++E + L A++ S ++ D V +
Sbjct: 380 GSVLSFVSVKELPINLAVEEKLRSTFGRETLHKKDNAVTLPSSSSSDDNKKADNSKTVEQ 439
Query: 424 Y------LMTNLHED--DFIIKPYQFNLDEVKGFEYRAKDAWRS---------------- 459
+ ED D IIK YQF ++EV+ F YRA+D WR+
Sbjct: 440 LKRSFANSLERPQEDIVDDIIKIYQFKMEEVEAFRYRAQDCWRAATRVAVHDTRIREIKT 499
Query: 460 ---------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPPALKKLA 503
+FE+N DL+ LRHDK T+++ SHLA VP+YI+P ALK++A
Sbjct: 500 EILNCEKLKGFFEENKRDLQALRHDKPSRTIKVHSHLAHVPEYILPKALKRVA 552
>gi|198434305|ref|XP_002132137.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 56
[Ciona intestinalis]
Length = 570
Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust.
Identities = 252/513 (49%), Positives = 334/513 (65%), Gaps = 60/513 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AIA+ GW PTLIQE+AIPL + KD+L RARTGSGKT A+A+P+IQ+++NLK T Q
Sbjct: 24 LKAIAEAGWASPTLIQEKAIPLAINGKDILSRARTGSGKTAAYAVPIIQQLLNLKNTTQE 83
Query: 90 ----QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPD 145
QE + LVL PS+EL Q + +Q+LT CSRDV +D+S + D ++ +PLL +PD
Sbjct: 84 DEYEQEVRGLVLVPSRELSGQAYNMMQQLTTSCSRDVTSIDVSMEGDPNLLKPLLAVKPD 143
Query: 146 IVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILA 205
IVV TP+R LAH++A L L +S+ +++DEADL+FSFGYEDD+K +LK LP YQ+ L
Sbjct: 144 IVVGTPSRVLAHVRAGNLTL-ASVRWLVLDEADLLFSFGYEDDLKILLKHLPSSYQSFLM 202
Query: 206 SATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQ-EDEKATILYTLLKLNL 264
SATLSEDV +LK L+L NPV L L E + +L YH+ + ED+K ++Y L KL L
Sbjct: 203 SATLSEDVEALKKLVLNNPVTLNLSEEELPMTDKLTQYHVFCESEDDKYLLIYALNKLKL 262
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
V+GK+++FVNT++KCY+LKL+LEQF I CVLNSELP RCH V Q+N+GLYD IIA+D
Sbjct: 263 VRGKSLLFVNTINKCYRLKLFLEQFSIFCCVLNSELPVSTRCHVVQQYNEGLYDYIIATD 322
Query: 325 EKALETPQINST----------NNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYI 374
E A+ ++ T +K + KE GVSRGIDFQ VSNVINFDFP + YI
Sbjct: 323 ESAVVASTVSETAPEIKKTGKHKKKKLTKAKEYGVSRGIDFQNVSNVINFDFPPTVGSYI 382
Query: 375 HRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDF 434
HR GRTARG GTALSFV E +L++ A L +N DD
Sbjct: 383 HRVGRTARGDKSGTALSFVVSEEMELLSQAQA-----------------RLSSN--ADDQ 423
Query: 435 IIKPYQFNLDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDL 469
++KPYQF +DE++GF YR KDA R+ YFE+NP DL
Sbjct: 424 VMKPYQFKMDEIEGFRYRCKDAIRAVTKRAIHDARVKELRREMLNSAKLKTYFEENPYDL 483
Query: 470 ETLRHDKALYTVRIQSHLADVPDYIVPPALKKL 502
+ LRHD A ++++ H+ +VP+Y++PP LK L
Sbjct: 484 QVLRHDAASRPMKVKKHMKNVPEYLIPPTLKGL 516
>gi|405945579|gb|EKC17390.1| Putative ATP-dependent RNA helicase DDX56 [Crassostrea gigas]
Length = 446
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 236/379 (62%), Positives = 300/379 (79%), Gaps = 7/379 (1%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AI++LGW EPT IQE+AIPL L KD+L RARTGSGKT AF IP+IQKI+ KQT+
Sbjct: 18 LKAISQLGWSEPTPIQEKAIPLALDGKDILARARTGSGKTAAFCIPVIQKILTAKQTSST 77
Query: 90 QE-TKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
++ KALVL+P+KELC+Q ++N+ +LT CSR+VK +DIS QV + Q+P+L+E+PDI+V
Sbjct: 78 EQCVKALVLTPTKELCHQAYRNLMDLTSSCSREVKVLDISPQVPLPTQKPMLMEKPDIIV 137
Query: 149 ATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
ATP RALAH+KA LDL+ SLE++IIDEADL+FSFGYEDD++ +L LPK+YQA L SAT
Sbjct: 138 ATPTRALAHIKAGNLDLRQSLELLIIDEADLLFSFGYEDDVRGILSNLPKIYQAFLMSAT 197
Query: 209 LSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGK 268
LSEDV +LK ++L N VILKLEE + SQL YHI +E +K T++Y L+KLNL++GK
Sbjct: 198 LSEDVRALKRMVLHNAVILKLEESQLPEASQLTQYHIKCEEQDKFTLVYALMKLNLLRGK 257
Query: 269 TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL 328
+IIFVN V++CYKLKL+LEQF I CVLNSELP +RCH V QFN+GLYD+IIASDE L
Sbjct: 258 SIIFVNEVNRCYKLKLFLEQFAIPACVLNSELPVNSRCHIVNQFNEGLYDIIIASDENLL 317
Query: 329 ETPQINSTN------NRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTAR 382
P+ + +++K+DKE GVSRGIDFQ VSNVINFDFP D+ YIHR GRTAR
Sbjct: 318 MDPKTKPLDPEKKKDKKRKKKDKEYGVSRGIDFQNVSNVINFDFPCDVDTYIHRVGRTAR 377
Query: 383 GKNQGTALSFVSLREQDLM 401
G NQG+ALSFVS+++ DL+
Sbjct: 378 GDNQGSALSFVSVKDMDLL 396
>gi|195438252|ref|XP_002067051.1| GK24230 [Drosophila willistoni]
gi|194163136|gb|EDW78037.1| GK24230 [Drosophila willistoni]
Length = 555
Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust.
Identities = 255/507 (50%), Positives = 331/507 (65%), Gaps = 60/507 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+A LGW +PTLIQ AIPL+L+ KDV+VRARTGSGKT +A+P+IQKI+N K A
Sbjct: 22 LKAVAYLGWHQPTLIQSTAIPLLLEGKDVVVRARTGSGKTATYALPLIQKILNSKLNASE 81
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQV-DVSVQEPLLVERPDIVV 148
Q ALVL+P+KELC Q I++L C + V+ DI+ D Q L ERPDIVV
Sbjct: 82 QCVSALVLAPTKELCRQSRLVIEKLAESCGKVVRVADIAGSSNDAVTQRHALSERPDIVV 141
Query: 149 ATPARALAHLKAK-TLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
+TP++ LAH +A +DLK +E +++DEADL+F+FGYE D K ++K LP +YQA+L SA
Sbjct: 142 STPSKILAHAEAGGVVDLKH-IETLVVDEADLIFAFGYEKDFKKLIKHLPPIYQAVLVSA 200
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
T+++DV+ +K L L+NPV LKLEEP + P QL H ILA+E++K ILY LLKL LV+G
Sbjct: 201 TITDDVVRMKGLCLKNPVTLKLEEPELVPQDQLTHQRILAEENDKPAILYALLKLRLVRG 260
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
K+IIFVN VD+CYK++L+LEQ I CVLNSELPA R H + QFN+G YD+IIASDE
Sbjct: 261 KSIIFVNNVDRCYKVRLFLEQIGIRACVLNSELPANIRIHTISQFNKGSYDIIIASDEHY 320
Query: 328 LETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQG 387
LE P + D ES SRGIDFQ V+NVINFDFP D+ YIHRAGRTARG N+G
Sbjct: 321 LEKP----GGKSSSRSDHESSSSRGIDFQCVNNVINFDFPRDVTSYIHRAGRTARGNNKG 376
Query: 388 TALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLH-------EDDFIIKPYQ 440
+ LS VS++E VNE + L +D+ IIK YQ
Sbjct: 377 SVLSLVSIKE---------------------GPVNEAVENKLRSTFAAQADDEQIIKNYQ 415
Query: 441 FNLDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHD 475
F +DE++ F YRA+D WR+ +FE+N DL+ LRHD
Sbjct: 416 FKMDEIESFRYRAQDCWRAATRVAVHDYRMREIKSEILNCEKLKGFFEENKRDLQALRHD 475
Query: 476 KALYTVRIQSHLADVPDYIVPPALKKL 502
K T+++QSHL+DVP+YIVP ALK++
Sbjct: 476 KPSRTIKVQSHLSDVPEYIVPKALKRV 502
>gi|148231338|ref|NP_001084622.1| DEAD (Asp-Glu-Ala-Asp) box helicase 56 [Xenopus laevis]
gi|46249840|gb|AAH68749.1| MGC81243 protein [Xenopus laevis]
Length = 552
Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust.
Identities = 248/511 (48%), Positives = 341/511 (66%), Gaps = 51/511 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L++IA LGW +PTLIQE+AIPL L+ KD+L RARTGSGKT +++IP+IQ ++ K
Sbjct: 16 LKSIADLGWAKPTLIQEKAIPLALEGKDLLARARTGSGKTASYSIPIIQNLLQAKMMVSE 75
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
Q + ++L P+KEL Q+ + I++LT+ C+RD+K DIS Q D+S Q P+L+E+PDIVV
Sbjct: 76 QAIRVIILVPTKELGQQVQQMIRQLTVYCARDIKVADISGQADISAQRPILMEKPDIVVG 135
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP+R L H+ +T+ ++ +L+ ++IDEADL+FSFG+E+D+K +L LPK++Q+ L SAT
Sbjct: 136 TPSRVLTHITQQTICVRDTLQALVIDEADLIFSFGFEEDLKNLLCQLPKIFQSFLMSATF 195
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
SEDV +LK L+L NPV LKLEE + SQL YHI +E++K +LYTLLKL+LV+GKT
Sbjct: 196 SEDVQALKELVLHNPVTLKLEESQLPDSSQLTQYHIQCEEEDKFLLLYTLLKLSLVRGKT 255
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
IIFVN VD+ Y+LKL+LEQF I CVLNSELP +RCH + QFNQG YD IIA+DE++L
Sbjct: 256 IIFVNEVDRSYRLKLFLEQFSIPACVLNSELPIHSRCHIISQFNQGFYDYIIATDEQSLA 315
Query: 330 TPQI--------NSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTA 381
P + ++ +DKE GVSRGIDFQ VS V+NFDFP + YIHRAGRTA
Sbjct: 316 DPSVKGRRGEGKKKGGRGQKGQDKEYGVSRGIDFQNVSTVLNFDFPQSVDSYIHRAGRTA 375
Query: 382 RGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQF 441
R N G AL+FV+ T L ++ E+ L V D++++KPY+F
Sbjct: 376 RANNPGVALTFVA---------HTELPLLAGVEEALGGGV---------PDEYVLKPYRF 417
Query: 442 NLDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDK 476
++EV+GF YR +DA RS YFEDNP D + LRHDK
Sbjct: 418 CMEEVEGFRYRCRDAMRSVTKQAIKEARLKEIKEELLNSEKLKTYFEDNPRDFQLLRHDK 477
Query: 477 ALYTVRIQSHLADVPDYIVPPALKKLARIED 507
L+ ++ HL +VPDY++PP L+ +A + +
Sbjct: 478 PLHPAIVKPHLKNVPDYLIPPTLRAVADLHN 508
>gi|187607828|ref|NP_001120553.1| DEAD (Asp-Glu-Ala-Asp) box helicase 56 [Xenopus (Silurana)
tropicalis]
gi|171846295|gb|AAI61488.1| LOC100145707 protein [Xenopus (Silurana) tropicalis]
Length = 552
Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust.
Identities = 252/511 (49%), Positives = 340/511 (66%), Gaps = 51/511 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L++IA LGW +PTLIQE+AIPL L+ KD+L RARTGSGKT A++IP+IQ ++ K T
Sbjct: 16 LKSIADLGWAKPTLIQEKAIPLALEGKDLLARARTGSGKTAAYSIPIIQNLLQAKMTVSE 75
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
Q + L+L P+KEL Q+ + I++LT+ C+RD+K DIS Q D+S Q P+L+E+PDIVV
Sbjct: 76 QAIRVLILVPTKELGQQVQQMIRQLTVYCARDIKVADISGQADISAQRPILMEKPDIVVG 135
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP+R L H+ +T+ ++ +L+ ++IDEADLVFSFG+E+D+K +L LPK++Q+ L SAT
Sbjct: 136 TPSRVLTHMTQQTICVRDTLQALVIDEADLVFSFGFEEDLKNLLCQLPKIFQSFLMSATF 195
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
SEDV +LK L+L NPV LKLEE SQL +HI +E++K +LYTLLKL+L++GKT
Sbjct: 196 SEDVQALKELVLHNPVTLKLEESQFPDSSQLTQFHIQCEEEDKFLLLYTLLKLSLIRGKT 255
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
IIFVN VD+ Y+LKL+LEQF I CVLNSELP +RCH + QFNQG YD IIA+DE +L
Sbjct: 256 IIFVNEVDRSYRLKLFLEQFSIPACVLNSELPIHSRCHIISQFNQGFYDYIIATDEHSLA 315
Query: 330 TPQI--------NSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTA 381
P + ++ +DKE GVSRGIDFQ VS V+NFDFP + YIHRAGRTA
Sbjct: 316 DPSVKGRRGEGKKKGGKGQKGQDKEYGVSRGIDFQNVSTVLNFDFPQSVDSYIHRAGRTA 375
Query: 382 RGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQF 441
R N G AL+FV+ T L +S E+ L V D+ ++KPY+F
Sbjct: 376 RANNPGVALTFVA---------HTELPLLSEVEEALGGGV---------PDEHVLKPYRF 417
Query: 442 NLDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDK 476
++EV+GF YR +DA RS YFEDNP D + LRHDK
Sbjct: 418 CMEEVEGFRYRCRDAMRSVTKQAIKEARLKEIKEELLNSEKLKTYFEDNPRDFQLLRHDK 477
Query: 477 ALYTVRIQSHLADVPDYIVPPALKKLARIED 507
L+ ++ HL +VP+Y++PPAL+ +A I +
Sbjct: 478 PLHPAIVKPHLKNVPEYLIPPALRAVADIHN 508
>gi|156407059|ref|XP_001641362.1| predicted protein [Nematostella vectensis]
gi|156228500|gb|EDO49299.1| predicted protein [Nematostella vectensis]
Length = 507
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 242/506 (47%), Positives = 335/506 (66%), Gaps = 60/506 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++AI+KL W +PT IQE+AI L L+ KDVL RA+TGSGKT A+AIP++Q+I+ KQT +
Sbjct: 21 VKAISKLNWSKPTPIQEKAITLALEGKDVLARAKTGSGKTAAYAIPVVQRILQEKQTCKE 80
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+AL+L P+KEL Q +N +EL+ C+R+V+ D++ Q ++ +PLL+++PDIVV
Sbjct: 81 SYIRALILVPTKELAQQAARNAKELSSCCAREVRVADVA-QGNLPSTKPLLMDKPDIVVG 139
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP+ L H++AK +DLK SL++++IDEADLVFS+GYEDD+K +L LPK+YQA L SATL
Sbjct: 140 TPSGILGHIQAKNMDLKDSLQMLVIDEADLVFSYGYEDDLKVLLSHLPKIYQAFLMSATL 199
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
++DV +LK L+L NPV LKL E + +L Y I + D+K ++YTLLKL LV+GKT
Sbjct: 200 TDDVKALKKLVLHNPVTLKLNESQLPEDDRLVQYLIKCEPDDKFLLIYTLLKLRLVRGKT 259
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
++FVN +D+CY+LKL+LEQF I CVLNSELP +R H V +FN+ +YD IIASDE +L+
Sbjct: 260 LLFVNGIDRCYRLKLFLEQFSIKACVLNSELPHNSRLHIVEEFNRDVYDYIIASDEASLD 319
Query: 330 TPQINSTNNR-------------KRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHR 376
+ ++R +RK+DKE GV+RGIDFQ V NVINFDFP ++ YIHR
Sbjct: 320 L----APSSRILAFFFYKISFIFRRKKDKEYGVARGIDFQGVENVINFDFPSTVEAYIHR 375
Query: 377 AGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFII 436
GRTARG + GTALSFV+ +D T +S E L D +
Sbjct: 376 VGRTARGDSSGTALSFVT------HSDNTVIS-----------KAEERLAQETGSDKEVF 418
Query: 437 KPYQFNLDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLET 471
KP+QF ++E++GF YRA+DA R+ YFEDNP DL+
Sbjct: 419 KPFQFRMEEIEGFRYRARDAIRAVTKTAVKEARLKEIKREILNSEKLKAYFEDNPRDLQV 478
Query: 472 LRHDKALYTVRIQSHLADVPDYIVPP 497
LRHDK L+ ++Q+H+ +VPDY+ P
Sbjct: 479 LRHDKELHPAKVQAHMKNVPDYLGIP 504
>gi|348560130|ref|XP_003465867.1| PREDICTED: probable ATP-dependent RNA helicase DDX56-like [Cavia
porcellus]
Length = 547
Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust.
Identities = 241/507 (47%), Positives = 327/507 (64%), Gaps = 51/507 (10%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+A LGW PTLIQE+AIPL L+ KD+L RARTGSGKT A+AIPM+Q +++ K T V
Sbjct: 19 LQAVADLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQLLLHRKATGPV 78
Query: 90 --QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
Q KAL+L P+KEL Q IQ+L C+RDV+ ++S D + Q +L+E+PD+V
Sbjct: 79 VEQAVKALILVPTKELARQAQFMIQQLAAYCARDVRVANVSAAEDTASQRAMLMEKPDVV 138
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
V TP+R L HL+ L L+ SLE++++DEADL+FSFG+EDD+K++L LP++YQA L SA
Sbjct: 139 VGTPSRILNHLQQDNLKLRDSLELLVVDEADLLFSFGFEDDLKSLLCHLPRIYQAFLMSA 198
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQ-EDEKATILYTLLKLNLVQ 266
T +EDV +LK L+L NPV LKL+E + QL + ++ + E++K +LY LLKL+L++
Sbjct: 199 TFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLLLYALLKLSLIR 258
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
GK+++FVN++++ Y+L+L+LEQF I TCVLN ELP ++RCH + QFNQG YD +IA+D
Sbjct: 259 GKSLLFVNSLERSYRLRLFLEQFSIPTCVLNGELPLRSRCHIISQFNQGFYDCVIATDSD 318
Query: 327 ALETPQINSTNNRKRKRDK----ESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTAR 382
L P RK K DK E+GV+RGIDF VS V+NFD P + YIHRAGRTAR
Sbjct: 319 VLGAPAKGKQRGRKPKGDKASDPEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTAR 378
Query: 383 GKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFN 442
N G L+FV EQ + R ++L+ D E + PYQF+
Sbjct: 379 ANNPGIVLTFVLPTEQSQLR----------RIEELLTDEGEA---------SALLPYQFH 419
Query: 443 LDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKA 477
++E++GF YR KDA RS YFEDNP DL+ LRHD
Sbjct: 420 MEEIEGFRYRCKDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQLLRHDLP 479
Query: 478 LYTVRIQSHLADVPDYIVPPALKKLAR 504
L+ ++ HL VPDY+VPPAL+ L R
Sbjct: 480 LHPAVVKPHLGHVPDYLVPPALRGLVR 506
>gi|340370804|ref|XP_003383936.1| PREDICTED: probable ATP-dependent RNA helicase DDX56-like
[Amphimedon queenslandica]
Length = 545
Score = 449 bits (1156), Expect = e-123, Method: Compositional matrix adjust.
Identities = 239/511 (46%), Positives = 335/511 (65%), Gaps = 48/511 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTA-- 87
++A+ KLGW +PT IQE+A+PLI++ KD++V+A+TGSGKT ++A+P+IQKI+ L+ T+
Sbjct: 13 VKAVRKLGWGQPTPIQEKAVPLIMEGKDLVVKAKTGSGKTASYALPLIQKILELQSTSIK 72
Query: 88 QVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
KALVL PS+EL Q I+EL CSRD+K V +S+ VS Q +L+E PD+V
Sbjct: 73 VPPSVKALVLVPSQELSLQAAAQIKELCTCCSRDIKVVCVSQSNAVSSQRTVLLECPDVV 132
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
V TP+R L+HL K+L L SL VI DEADL+FS+GYE+D+ ++ FLP Q+IL SA
Sbjct: 133 VGTPSRILSHLSGKSLLLTESLHFVIFDEADLLFSYGYEEDINNIVSFLPSPIQSILMSA 192
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
TL+EDV+SLK ++L PV +KLEE + +L YHI ED+K ++Y+LLKL L++G
Sbjct: 193 TLNEDVISLKKVVLHQPVTIKLEESELPQDDRLTQYHIQCLEDDKFLLIYSLLKLKLIRG 252
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
K++IFVN + +CYKLKL+LEQF I +CVLNSELP +RCH + QFN+ +YD IIA+DE
Sbjct: 253 KSLIFVNDITRCYKLKLFLEQFFIKSCVLNSELPHNSRCHVIEQFNRDIYDYIIATDELV 312
Query: 328 LETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQG 387
T Q T +K+ +DKE GVSRGIDFQ V NV+NFDFP + + YIHR GRTARG + G
Sbjct: 313 DHTHQ---TKKKKKGQDKEYGVSRGIDFQGVVNVVNFDFPPNSKAYIHRVGRTARGNDYG 369
Query: 388 TALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVK 447
TAL+FVS E+ + T L + ++D +D +++PY+F + E++
Sbjct: 370 TALTFVSPSEETKL---TELQLLLKEQRDFDHD--------------LVQPYKFKMSEIE 412
Query: 448 GFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKALY-TV 481
GF YR ++A ++ +FEDNP DL+ LRHD+ L +
Sbjct: 413 GFRYRVQEAVQAVTQLAIKEARLKEIRCEILSSKRLKTHFEDNPRDLQVLRHDRDLLPSS 472
Query: 482 RIQSHLADVPDYIVPPALKKLARIEDDGDED 512
+++ HL +P Y+VP ALK A E +G D
Sbjct: 473 KVKEHLKYIPPYLVPKALKSSAVEEREGIGD 503
>gi|332239444|ref|XP_003268913.1| PREDICTED: probable ATP-dependent RNA helicase DDX56 isoform 1
[Nomascus leucogenys]
Length = 547
Score = 449 bits (1156), Expect = e-123, Method: Compositional matrix adjust.
Identities = 235/507 (46%), Positives = 327/507 (64%), Gaps = 51/507 (10%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+ LGW PTLIQE+AIPL L+ KD+L RARTGSGKT A+AIPM+Q +++ K T V
Sbjct: 19 LQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQLLLHRKATGPV 78
Query: 90 --QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
Q + LVL P+KEL Q IQ+L C+RDV+ ++S D + Q +L+E+PD+V
Sbjct: 79 VEQAVRGLVLVPTKELARQAQSMIQQLATYCARDVRVANVSAAEDSASQRAVLMEKPDVV 138
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
V TP+R L+HL+ +L L+ SLE++++DEADL+FSFG+E+++K++L LP++YQA L SA
Sbjct: 139 VGTPSRILSHLQQDSLKLRDSLELLVVDEADLLFSFGFEEELKSLLCHLPRIYQAFLMSA 198
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQ-EDEKATILYTLLKLNLVQ 266
T +EDV +LK L+L NPV LKL+E + QL + ++ + E++K +LY LLKL+L++
Sbjct: 199 TFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLLLYALLKLSLIR 258
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
GK+++FVNT+D+ Y+L+L+LEQF I +CVLN ELP ++RCH + QFNQG YD +IA+D +
Sbjct: 259 GKSLLFVNTLDRSYRLRLFLEQFSIPSCVLNGELPLRSRCHIISQFNQGFYDCVIATDAE 318
Query: 327 ALETPQINSTNNRKRKRDK----ESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTAR 382
L P R K DK E+GV+RGIDF VS V+NFD P + YIHRAGRTAR
Sbjct: 319 VLGAPIKGKRRGRGPKGDKASDPEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTAR 378
Query: 383 GKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFN 442
N G L+FV EQ + + ++L++ N I+ PYQF
Sbjct: 379 ANNPGIVLTFVLPTEQSHLG----------KIEELLSGENR---------SPILLPYQFR 419
Query: 443 LDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKA 477
++E++GF YR +DA RS YFEDNP DL+ LRHD
Sbjct: 420 MEEIEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQLLRHDLP 479
Query: 478 LYTVRIQSHLADVPDYIVPPALKKLAR 504
L+ ++ HL VPDY+VPPAL+ L R
Sbjct: 480 LHPAVVKPHLGHVPDYLVPPALRGLVR 506
>gi|297288380|ref|XP_001089984.2| PREDICTED: probable ATP-dependent RNA helicase DDX56 isoform 1
[Macaca mulatta]
Length = 550
Score = 449 bits (1156), Expect = e-123, Method: Compositional matrix adjust.
Identities = 234/507 (46%), Positives = 327/507 (64%), Gaps = 51/507 (10%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+ +GW PTLIQE+AIPL L+ KD+L RARTGSGKT A+AIPM+Q +++ K T V
Sbjct: 23 LQAVTDMGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQLLLHRKATGPV 82
Query: 90 --QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
Q + LVL P+KEL Q IQ+L C+RDV+ ++S D + Q +L+E+PD+V
Sbjct: 83 VEQAVRGLVLVPTKELARQAQSMIQQLATYCARDVRVANVSAAEDSASQRAMLMEKPDVV 142
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
V TP+R L+HL+ +L L+ SLE++++DEADL+FSFG+E+++K++L LP++YQA L SA
Sbjct: 143 VGTPSRILSHLQQDSLKLRDSLELLVVDEADLLFSFGFEEELKSLLCHLPRIYQAFLMSA 202
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQ-EDEKATILYTLLKLNLVQ 266
T +EDV +LK L+L NPV LKL+E + QL + ++ + E++K +LY LLKL+L++
Sbjct: 203 TFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLLLYALLKLSLIR 262
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
GK+++FVNT+++ Y+L+L+LEQF I TCVLN ELP ++RCH + QFNQG YD +IA+D +
Sbjct: 263 GKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGELPLRSRCHIISQFNQGFYDCVIATDAE 322
Query: 327 ALETPQINSTNNRKRKRDK----ESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTAR 382
L P R K DK E+GV+RGIDF VS V+NFD P + YIHRAGRTAR
Sbjct: 323 VLGAPVKGKRRGRGPKGDKASDPEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTAR 382
Query: 383 GKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFN 442
N G L+FV EQ + + ++L++ N I+ PYQF
Sbjct: 383 ANNPGIVLTFVLPTEQSHLG----------KIEELLSGENR---------GPILLPYQFR 423
Query: 443 LDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKA 477
++E++GF YR +DA RS YFEDNP DL+ LRHD
Sbjct: 424 MEEIEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQLLRHDLP 483
Query: 478 LYTVRIQSHLADVPDYIVPPALKKLAR 504
L+ ++ HL VPDY+VPPAL+ L R
Sbjct: 484 LHPAVVKPHLGHVPDYLVPPALRGLVR 510
>gi|380813950|gb|AFE78849.1| putative ATP-dependent RNA helicase DDX56 [Macaca mulatta]
gi|383419375|gb|AFH32901.1| putative ATP-dependent RNA helicase DDX56 [Macaca mulatta]
gi|384947812|gb|AFI37511.1| putative ATP-dependent RNA helicase DDX56 [Macaca mulatta]
Length = 546
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 234/507 (46%), Positives = 327/507 (64%), Gaps = 51/507 (10%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+ +GW PTLIQE+AIPL L+ KD+L RARTGSGKT A+AIPM+Q +++ K T V
Sbjct: 19 LQAVTDMGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQLLLHRKATGPV 78
Query: 90 --QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
Q + LVL P+KEL Q IQ+L C+RDV+ ++S D + Q +L+E+PD+V
Sbjct: 79 VEQAVRGLVLVPTKELARQAQSMIQQLATYCARDVRVANVSAAEDSASQRAMLMEKPDVV 138
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
V TP+R L+HL+ +L L+ SLE++++DEADL+FSFG+E+++K++L LP++YQA L SA
Sbjct: 139 VGTPSRILSHLQQDSLKLRDSLELLVVDEADLLFSFGFEEELKSLLCHLPRIYQAFLMSA 198
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQ-EDEKATILYTLLKLNLVQ 266
T +EDV +LK L+L NPV LKL+E + QL + ++ + E++K +LY LLKL+L++
Sbjct: 199 TFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLLLYALLKLSLIR 258
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
GK+++FVNT+++ Y+L+L+LEQF I TCVLN ELP ++RCH + QFNQG YD +IA+D +
Sbjct: 259 GKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGELPLRSRCHIISQFNQGFYDCVIATDAE 318
Query: 327 ALETPQINSTNNRKRKRDK----ESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTAR 382
L P R K DK E+GV+RGIDF VS V+NFD P + YIHRAGRTAR
Sbjct: 319 VLGAPVKGKRRGRGPKGDKASDPEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTAR 378
Query: 383 GKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFN 442
N G L+FV EQ + + ++L++ N I+ PYQF
Sbjct: 379 ANNPGIVLTFVLPTEQSHLG----------KIEELLSGENR---------GPILLPYQFR 419
Query: 443 LDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKA 477
++E++GF YR +DA RS YFEDNP DL+ LRHD
Sbjct: 420 MEEIEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQLLRHDLP 479
Query: 478 LYTVRIQSHLADVPDYIVPPALKKLAR 504
L+ ++ HL VPDY+VPPAL+ L R
Sbjct: 480 LHPAVVKPHLGHVPDYLVPPALRGLVR 506
>gi|431909937|gb|ELK13033.1| Putative ATP-dependent RNA helicase DDX56 [Pteropus alecto]
Length = 545
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 230/505 (45%), Positives = 317/505 (62%), Gaps = 51/505 (10%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+ LGW PTLIQE+AIPL L+ KD+L RARTGSGKT A+AIPM+Q +++ K T
Sbjct: 19 LQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQLLLHKKTTGPA 78
Query: 90 --QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
Q + +VL P+KEL Q IQ+L C+RD++ ++S D + Q +L E+PDIV
Sbjct: 79 VEQAVRGVVLVPTKELARQAQSMIQQLAAYCARDIRVANVSAAEDSASQRAVLTEKPDIV 138
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
V TP+R L HL+ +L L+ SLE++++DEADL+FSFG+E+++K++L LP++YQA L SA
Sbjct: 139 VGTPSRILNHLQQDSLRLRDSLELLVMDEADLLFSFGFEEELKSLLCHLPRIYQAFLMSA 198
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHIL-AQEDEKATILYTLLKLNLVQ 266
T +EDV +LK L+L NPV LKL+E + QL + ++ A E++K +LY LLKL L++
Sbjct: 199 TFNEDVQALKELVLHNPVTLKLQESQLPGPEQLQQFQVVCAAEEDKFLVLYALLKLALIR 258
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
GK ++FVNT+++ Y+L+L+LEQF I CVLN ELP ++RCH + QFNQGLYD +IA+D +
Sbjct: 259 GKALLFVNTLERSYRLRLFLEQFSIPACVLNGELPLRSRCHIISQFNQGLYDCVIATDAE 318
Query: 327 ALETPQINSTNNRKRKRDK----ESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTAR 382
L + K D+ E+GV+RGIDF V V+NFD P + YIHRAGRTAR
Sbjct: 319 VLGASVKGKRRGKGSKGDRASDPEAGVARGIDFHHVCAVLNFDLPPSPEAYIHRAGRTAR 378
Query: 383 GKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFN 442
N G L+FV T L + E+ L D D + PYQF+
Sbjct: 379 ANNPGIVLTFVL---------PTELPHLGKIEELLGGD----------SDAPTLLPYQFH 419
Query: 443 LDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKA 477
++E++GF YR +DA RS YFEDNP DL+ LRHD
Sbjct: 420 MEEIEGFRYRCRDAMRSVTKQGIREARLKEIKEELLHSERLKTYFEDNPRDLQLLRHDLP 479
Query: 478 LYTVRIQSHLADVPDYIVPPALKKL 502
L+ ++ HL VPDY+VPPAL+ L
Sbjct: 480 LHPAVVKPHLGHVPDYLVPPALRGL 504
>gi|402863582|ref|XP_003896086.1| PREDICTED: probable ATP-dependent RNA helicase DDX56 isoform 1
[Papio anubis]
Length = 546
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 234/507 (46%), Positives = 327/507 (64%), Gaps = 51/507 (10%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+ +GW PTLIQE+AIPL L+ KD+L RARTGSGKT A+AIPM+Q +++ K T V
Sbjct: 19 LQAVTDMGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQLLLHRKATGPV 78
Query: 90 --QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
Q + LVL P+KEL Q IQ+L C+RDV+ ++S D + Q +L+E+PD+V
Sbjct: 79 VEQAVRGLVLVPTKELARQAQSMIQQLATYCARDVRVANVSAAEDSASQRAMLMEKPDVV 138
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
V TP+R L+HL+ +L L+ SLE++++DEADL+FSFG+E+++K++L LP++YQA L SA
Sbjct: 139 VGTPSRILSHLQQDSLKLRDSLELLVVDEADLLFSFGFEEELKSLLCHLPRIYQAFLMSA 198
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQ-EDEKATILYTLLKLNLVQ 266
T +EDV +LK L+L NPV LKL+E + QL + ++ + E++K +LY LLKL+L++
Sbjct: 199 TFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLLLYALLKLSLIR 258
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
GK+++FVNT+++ Y+L+L+LEQF I TCVLN ELP ++RCH + QFNQG YD +IA+D +
Sbjct: 259 GKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGELPLRSRCHIISQFNQGFYDCVIATDAE 318
Query: 327 ALETPQINSTNNRKRKRDK----ESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTAR 382
L P R K DK E+GV+RGIDF VS V+NFD P + YIHRAGRTAR
Sbjct: 319 VLGAPVKGKRRGRGPKGDKASDPEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTAR 378
Query: 383 GKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFN 442
N G L+FV EQ + + ++L++ N I+ PYQF
Sbjct: 379 ANNPGIVLTFVLPPEQSHLG----------KIEELLSGENR---------GPILLPYQFR 419
Query: 443 LDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKA 477
++E++GF YR +DA RS YFEDNP DL+ LRHD
Sbjct: 420 MEEIEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQLLRHDLP 479
Query: 478 LYTVRIQSHLADVPDYIVPPALKKLAR 504
L+ ++ HL VPDY+VPPAL+ L R
Sbjct: 480 LHPAVVKPHLGHVPDYLVPPALRGLVR 506
>gi|10434373|dbj|BAB14238.1| unnamed protein product [Homo sapiens]
Length = 547
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 237/507 (46%), Positives = 326/507 (64%), Gaps = 51/507 (10%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+ LGW PTLIQE+AIPL L+ KD+L RARTGSGKT A+AIPM+Q +++ K T V
Sbjct: 19 LQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQLLLHRKATGPV 78
Query: 90 --QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
Q + LVL P+KEL Q IQ+L C+RDV+ ++S D Q +L+E+PD+V
Sbjct: 79 VEQAVRGLVLVPTKELARQAQSMIQQLATYCARDVRVANVSAAEDSVSQRAVLMEKPDVV 138
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
V TP+R L+HL+ +L L+ SLE++++DEADL+FSFG+E+++K++L LP++YQA L SA
Sbjct: 139 VGTPSRTLSHLQQDSLKLRDSLELLVVDEADLLFSFGFEEELKSLLCHLPRIYQAFLMSA 198
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQ-EDEKATILYTLLKLNLVQ 266
T +EDV +LK LIL NPV LKL+E + QL + ++ + E++K +LY LLKL+L++
Sbjct: 199 TFNEDVQALKELILHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLLLYALLKLSLIR 258
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
GK+++FVNT+++ Y+L+L+LEQF I TCVLN ELP ++RCH + QFNQG YD +IA+D +
Sbjct: 259 GKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGELPLRSRCHIISQFNQGFYDCVIATDAE 318
Query: 327 ALETPQINSTNNRKRKRDK----ESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTAR 382
L P R K DK E+GV+RGIDF VS V+NFD P + YIHRAGRTAR
Sbjct: 319 VLGAPVKGKRRGRGPKGDKASDPEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTAR 378
Query: 383 GKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFN 442
N G L+FV EQ F + ++L++ N I+ PYQF
Sbjct: 379 ANNPGIVLTFVLPTEQ----------FHLGKIEELLSGENR---------GPILLPYQFR 419
Query: 443 LDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKA 477
++E++GF YR +DA RS YFEDNP DL+ LRHD
Sbjct: 420 MEEIEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQLLRHDLP 479
Query: 478 LYTVRIQSHLADVPDYIVPPALKKLAR 504
L+ ++ HL VPDY+VPPAL+ L R
Sbjct: 480 LHPAVVKPHLGHVPDYLVPPALRGLVR 506
>gi|9506931|ref|NP_061955.1| probable ATP-dependent RNA helicase DDX56 isoform 1 [Homo sapiens]
gi|426356101|ref|XP_004045430.1| PREDICTED: probable ATP-dependent RNA helicase DDX56 isoform 1
[Gorilla gorilla gorilla]
gi|20139238|sp|Q9NY93.1|DDX56_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX56; AltName:
Full=ATP-dependent 61 kDa nucleolar RNA helicase;
AltName: Full=DEAD box protein 21; AltName: Full=DEAD
box protein 56
gi|11527084|gb|AAG36876.1|AF247666_1 DEAD-box RNA helicase [Homo sapiens]
gi|7576252|emb|CAB87992.1| nucleolar RNA-helicase [Homo sapiens]
gi|12052922|emb|CAB66635.1| hypothetical protein [Homo sapiens]
gi|12654785|gb|AAH01235.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 [Homo sapiens]
gi|51094496|gb|EAL23752.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 [Homo sapiens]
gi|119581498|gb|EAW61094.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56, isoform CRA_b [Homo
sapiens]
gi|123980624|gb|ABM82141.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 [synthetic construct]
gi|123995445|gb|ABM85324.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 [synthetic construct]
gi|168277808|dbj|BAG10882.1| ATP-dependent RNA helicase DDX56 [synthetic construct]
Length = 547
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 237/507 (46%), Positives = 326/507 (64%), Gaps = 51/507 (10%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+ LGW PTLIQE+AIPL L+ KD+L RARTGSGKT A+AIPM+Q +++ K T V
Sbjct: 19 LQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQLLLHRKATGPV 78
Query: 90 --QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
Q + LVL P+KEL Q IQ+L C+RDV+ ++S D Q +L+E+PD+V
Sbjct: 79 VEQAVRGLVLVPTKELARQAQSMIQQLATYCARDVRVANVSAAEDSVSQRAVLMEKPDVV 138
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
V TP+R L+HL+ +L L+ SLE++++DEADL+FSFG+E+++K++L LP++YQA L SA
Sbjct: 139 VGTPSRILSHLQQDSLKLRDSLELLVVDEADLLFSFGFEEELKSLLCHLPRIYQAFLMSA 198
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQ-EDEKATILYTLLKLNLVQ 266
T +EDV +LK LIL NPV LKL+E + QL + ++ + E++K +LY LLKL+L++
Sbjct: 199 TFNEDVQALKELILHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLLLYALLKLSLIR 258
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
GK+++FVNT+++ Y+L+L+LEQF I TCVLN ELP ++RCH + QFNQG YD +IA+D +
Sbjct: 259 GKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGELPLRSRCHIISQFNQGFYDCVIATDAE 318
Query: 327 ALETPQINSTNNRKRKRDK----ESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTAR 382
L P R K DK E+GV+RGIDF VS V+NFD P + YIHRAGRTAR
Sbjct: 319 VLGAPVKGKRRGRGPKGDKASDPEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTAR 378
Query: 383 GKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFN 442
N G L+FV EQ F + ++L++ N I+ PYQF
Sbjct: 379 ANNPGIVLTFVLPTEQ----------FHLGKIEELLSGENR---------GPILLPYQFR 419
Query: 443 LDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKA 477
++E++GF YR +DA RS YFEDNP DL+ LRHD
Sbjct: 420 MEEIEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQLLRHDLP 479
Query: 478 LYTVRIQSHLADVPDYIVPPALKKLAR 504
L+ ++ HL VPDY+VPPAL+ L R
Sbjct: 480 LHPAVVKPHLGHVPDYLVPPALRGLVR 506
>gi|296209197|ref|XP_002751433.1| PREDICTED: probable ATP-dependent RNA helicase DDX56 [Callithrix
jacchus]
Length = 547
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 235/507 (46%), Positives = 329/507 (64%), Gaps = 51/507 (10%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+ LGW PTLIQE+AIPL L+ KD+L RARTGSGKT A+AIPM+Q +++ K T V
Sbjct: 19 LQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQLLLHRKATGPV 78
Query: 90 --QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
Q + LVL P+KEL Q IQ+L C+RDV+ ++S D++ Q +L+E+PD++
Sbjct: 79 VEQAVRGLVLVPTKELARQAQCMIQQLATYCARDVRVANVSAAEDLASQRAVLMEKPDVI 138
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
V TP+R L+HL+ +L L+ SLE++++DEADL+FSFG+E+++K++L LP++YQA L SA
Sbjct: 139 VGTPSRILSHLQQDSLKLRDSLELLVVDEADLLFSFGFEEELKSLLCHLPRIYQAFLMSA 198
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQ-EDEKATILYTLLKLNLVQ 266
T +EDV +LK L+L NPV LKL+E + QL + ++ + E++K +LYTLLKL+L++
Sbjct: 199 TFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLLLYTLLKLSLIR 258
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
GK+++FVNT+++ Y+L+L+LEQF I TCVLN ELP ++RCH + QFNQG YD +IA+D +
Sbjct: 259 GKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGELPLRSRCHIISQFNQGFYDCVIATDAE 318
Query: 327 ALETPQINSTNNRKRKRDK----ESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTAR 382
L P R K DK E+GV+RGIDF VS V+NFD P + YIHRAGRTAR
Sbjct: 319 VLGAPVKGKRRGRGPKGDKASDLEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTAR 378
Query: 383 GKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFN 442
N G L+FV EQ + + ++L++ N I+ PYQF
Sbjct: 379 ANNPGIVLTFVLPTEQSHLG----------KIEELLSGENR---------GPILLPYQFR 419
Query: 443 LDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKA 477
++E++GF YR +DA RS YFEDNP DL+ LRHD
Sbjct: 420 MEEIEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQLLRHDLP 479
Query: 478 LYTVRIQSHLADVPDYIVPPALKKLAR 504
L+ ++ HL VPDY+VPPAL+ L R
Sbjct: 480 LHPAVVKPHLGHVPDYLVPPALRGLVR 506
>gi|114613145|ref|XP_001145021.1| PREDICTED: probable ATP-dependent RNA helicase DDX56 isoform 6 [Pan
troglodytes]
gi|410207178|gb|JAA00808.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 [Pan troglodytes]
gi|410263070|gb|JAA19501.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 [Pan troglodytes]
gi|410292962|gb|JAA25081.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 [Pan troglodytes]
gi|410328987|gb|JAA33440.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 [Pan troglodytes]
Length = 547
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 237/507 (46%), Positives = 326/507 (64%), Gaps = 51/507 (10%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+ LGW PTLIQE+AIPL L+ KD+L RARTGSGKT A+AIPM+Q +++ K T V
Sbjct: 19 LQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQLLLHRKATGPV 78
Query: 90 --QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
Q + LVL P+KEL Q IQ+L C+RDV+ ++S D Q +L+E+PD+V
Sbjct: 79 VEQAVRGLVLVPTKELARQAQSMIQQLATYCARDVRVANVSAAEDSVSQRAVLMEKPDVV 138
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
V TP+R L+HL+ +L L+ SLE++++DEADL+FSFG+E+++K++L LP++YQA L SA
Sbjct: 139 VGTPSRILSHLQQDSLKLRDSLELLVVDEADLLFSFGFEEELKSLLCHLPRIYQAFLMSA 198
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQ-EDEKATILYTLLKLNLVQ 266
T +EDV +LK LIL NPV LKL+E + QL + ++ + E++K +LY LLKL+L++
Sbjct: 199 TFNEDVQALKELILHNPVTLKLQESQLPGPDQLQQFQVICETEEDKFLLLYALLKLSLIR 258
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
GK+++FVNT+++ Y+L+L+LEQF I TCVLN ELP ++RCH + QFNQG YD +IA+D +
Sbjct: 259 GKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGELPLRSRCHIISQFNQGFYDCVIATDAE 318
Query: 327 ALETPQINSTNNRKRKRDK----ESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTAR 382
L P R K DK E+GV+RGIDF VS V+NFD P + YIHRAGRTAR
Sbjct: 319 VLGAPVKGKRRGRGPKGDKASDLEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTAR 378
Query: 383 GKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFN 442
N G L+FV EQ F + ++L++ N I+ PYQF
Sbjct: 379 ANNPGIVLTFVLPTEQ----------FHLGKIEELLSGENR---------GPILLPYQFR 419
Query: 443 LDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKA 477
++E++GF YR +DA RS YFEDNP DL+ LRHD
Sbjct: 420 MEEIEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQLLRHDLP 479
Query: 478 LYTVRIQSHLADVPDYIVPPALKKLAR 504
L+ ++ HL VPDY+VPPAL+ L R
Sbjct: 480 LHPAVVKPHLGHVPDYLVPPALRGLVR 506
>gi|62896883|dbj|BAD96382.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 variant [Homo sapiens]
Length = 547
Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust.
Identities = 236/507 (46%), Positives = 325/507 (64%), Gaps = 51/507 (10%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+ LGW PTLIQE+AIPL L+ KD+L RARTGSGKT A+AIPM+Q +++ K T V
Sbjct: 19 LQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQLLLHRKATGPV 78
Query: 90 --QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
Q + LVL P+KEL Q IQ+L C+RDV+ ++S D Q +L+E+PD+V
Sbjct: 79 VEQAVRGLVLVPTKELARQAQSMIQQLATYCARDVRVANVSAAEDSVSQRAVLMEKPDVV 138
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
V TP+R L+HL+ +L L+ SLE++++DEADL+FSFG+E+++K++L LP++YQA L SA
Sbjct: 139 VGTPSRILSHLQQDSLKLRDSLELLVVDEADLLFSFGFEEELKSLLCHLPRIYQAFLMSA 198
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQ-EDEKATILYTLLKLNLVQ 266
T +EDV +LK LIL NP LKL+E + QL + ++ + E++K +LY LLKL+L++
Sbjct: 199 TFNEDVQALKELILHNPATLKLQESQLPGPDQLQQFQVVCETEEDKFLLLYALLKLSLIR 258
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
GK+++FVNT+++ Y+L+L+LEQF I TCVLN ELP ++RCH + QFNQG YD +IA+D +
Sbjct: 259 GKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGELPLRSRCHIISQFNQGFYDCVIATDAE 318
Query: 327 ALETPQINSTNNRKRKRDK----ESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTAR 382
L P R K DK E+GV+RGIDF VS V+NFD P + YIHRAGRTAR
Sbjct: 319 VLGAPVKGKRRGRGPKGDKASDPEAGVARGIDFHHVSAVLNFDLPPTTEAYIHRAGRTAR 378
Query: 383 GKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFN 442
N G L+FV EQ F + ++L++ N I+ PYQF
Sbjct: 379 ANNPGIVLTFVLPTEQ----------FHLGKIEELLSGENR---------GPILLPYQFR 419
Query: 443 LDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKA 477
++E++GF YR +DA RS YFEDNP DL+ LRHD
Sbjct: 420 MEEIEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQLLRHDLP 479
Query: 478 LYTVRIQSHLADVPDYIVPPALKKLAR 504
L+ ++ HL VPDY+VPPAL+ L R
Sbjct: 480 LHPAVVKPHLGHVPDYLVPPALRGLVR 506
>gi|397467114|ref|XP_003846141.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
DDX56 [Pan paniscus]
Length = 547
Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust.
Identities = 237/507 (46%), Positives = 325/507 (64%), Gaps = 51/507 (10%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+ LGW PTLIQE+AIPL L+ KD+L RARTGSGKT A+AIPM+Q +++ K T V
Sbjct: 19 LQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQLLLHRKATGPV 78
Query: 90 --QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
Q + LVL P+KEL Q IQ+L C+RDV+ ++S D Q +L+E+PD+V
Sbjct: 79 VEQAVRGLVLVPTKELARQAQSMIQQLATYCARDVRVANVSAAEDSVSQRAVLMEKPDVV 138
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
V TP+R L+HL+ +L L+ SLE++++DEADL FSFG+E+++K++L LP++YQA L SA
Sbjct: 139 VGTPSRILSHLQQDSLKLRDSLELLVVDEADLXFSFGFEEELKSLLCHLPRIYQAFLMSA 198
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQ-EDEKATILYTLLKLNLVQ 266
T +EDV +LK LIL NPV LKL+E + QL + ++ + E++K +LY LLKL+L++
Sbjct: 199 TFNEDVQALKELILHNPVTLKLQESQLPGPDQLQQFQVICETEEDKFLLLYALLKLSLIR 258
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
GK+++FVNT+++ Y+L+L+LEQF I TCVLN ELP ++RCH + QFNQG YD +IA+D +
Sbjct: 259 GKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGELPLRSRCHIISQFNQGFYDCVIATDAE 318
Query: 327 ALETPQINSTNNRKRKRDK----ESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTAR 382
L P R K DK E+GV+RGIDF VS V+NFD P + YIHRAGRTAR
Sbjct: 319 VLGAPVKGKRRGRGPKGDKASDLEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTAR 378
Query: 383 GKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFN 442
N G L+FV EQ F + ++L++ N I+ PYQF
Sbjct: 379 ANNPGIVLTFVLPTEQ----------FHLGKIEELLSGENR---------GPILLPYQFR 419
Query: 443 LDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKA 477
++E++GF YR +DA RS YFEDNP DL+ LRHD
Sbjct: 420 MEEIEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQLLRHDLP 479
Query: 478 LYTVRIQSHLADVPDYIVPPALKKLAR 504
L+ ++ HL VPDY+VPPAL+ L R
Sbjct: 480 LHPAVVKPHLGHVPDYLVPPALRGLVR 506
>gi|351706201|gb|EHB09120.1| Putative ATP-dependent RNA helicase DDX56 [Heterocephalus glaber]
Length = 546
Score = 446 bits (1148), Expect = e-122, Method: Compositional matrix adjust.
Identities = 238/505 (47%), Positives = 325/505 (64%), Gaps = 51/505 (10%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQAIA GW PTLIQE+AIPL L+ KD+L RARTGSGKT A+AIPM+Q +++ K T V
Sbjct: 19 LQAIADQGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQLLLHRKATGPV 78
Query: 90 --QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
Q + LVL P+KEL Q IQ+L C+RDV+ ++S D + Q +L+E+PD+V
Sbjct: 79 VEQAVRGLVLVPTKELARQAQSMIQQLAAYCARDVRVANVSAAEDSASQRAVLMEKPDVV 138
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
V TP+R L HL+ TL L+ SLE++++DE DL+FSFG+E+++K +L LP++YQA L SA
Sbjct: 139 VGTPSRILNHLQQDTLKLRDSLELLVMDETDLLFSFGFEEELKNLLCHLPRIYQAFLMSA 198
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQ-EDEKATILYTLLKLNLVQ 266
T +EDV +LK L+L NPV LKL+E + QL + ++ + E++K +LY LLKL+L++
Sbjct: 199 TFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLLLYALLKLSLIR 258
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
GK+++FVNT+++ Y+L+L+LEQF I TCVLN ELP +RCH + QFNQGLYD +IA+D +
Sbjct: 259 GKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGELPLHSRCHIISQFNQGLYDCVIATDAE 318
Query: 327 ALETPQINSTNNRKRKRDK----ESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTAR 382
L P RK K DK E+GV+RGIDF VS V+NFD P + YIHRAGRTAR
Sbjct: 319 VLGPPGKGKQWGRKSKGDKASDPEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTAR 378
Query: 383 GKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFN 442
N G L+FV LRE+ L E L+++ ++ PYQF+
Sbjct: 379 ANNPGIVLTFV------------------LREEQLQLGKIEELLSDEGSAPVLL-PYQFH 419
Query: 443 LDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKA 477
++E++GF YR +DA RS YFEDNP DL+ LRHD
Sbjct: 420 MEEIEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQLLRHDLP 479
Query: 478 LYTVRIQSHLADVPDYIVPPALKKL 502
L+ ++ HL VPDY+VPPAL+ L
Sbjct: 480 LHPAVVKPHLGHVPDYLVPPALRGL 504
>gi|403278477|ref|XP_003930831.1| PREDICTED: probable ATP-dependent RNA helicase DDX56 isoform 1
[Saimiri boliviensis boliviensis]
Length = 547
Score = 446 bits (1148), Expect = e-122, Method: Compositional matrix adjust.
Identities = 235/507 (46%), Positives = 328/507 (64%), Gaps = 51/507 (10%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+ LGW PTLIQE+AIPL L+ KD+L RARTGSGKT A+AIPM+Q +++ K T V
Sbjct: 19 LQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQLLLHRKATGPV 78
Query: 90 --QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
Q + LVL P+KEL Q IQ+L C+RDV+ ++S D + Q +L+E+PD++
Sbjct: 79 VEQAVRGLVLVPTKELARQAQCMIQQLATYCARDVRVANVSAVEDSASQRAVLMEKPDVI 138
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
V TP+R L+HL+ +L L+ SLE++++DEADL+FSFG+E+++K++L LP++YQA L SA
Sbjct: 139 VGTPSRILSHLQQDSLKLRDSLELLVMDEADLLFSFGFEEELKSLLCHLPRIYQAFLMSA 198
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQ-EDEKATILYTLLKLNLVQ 266
T +EDV +LK L+L NPV LKL+E + QL + ++ + E++K +LYTLLKL+L++
Sbjct: 199 TFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLLLYTLLKLSLIR 258
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
GK+++FVNT+++ Y+L+L+LEQF I TCVLN ELP ++RCH + QFNQG YD +IA+D +
Sbjct: 259 GKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGELPLRSRCHIISQFNQGFYDCVIATDAE 318
Query: 327 ALETPQINSTNNRKRKRDK----ESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTAR 382
L P R K DK E+GV+RGIDF VS V+NFD P + YIHRAGRTAR
Sbjct: 319 VLGAPVKGKRRGRGPKGDKASDPEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTAR 378
Query: 383 GKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFN 442
N G L+FV EQ + + ++L++ N I+ PYQF
Sbjct: 379 ANNPGVVLTFVLPTEQSHLG----------KIEELLSGENR---------GPILLPYQFQ 419
Query: 443 LDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKA 477
++E++GF YR +DA RS YFEDNP DL+ LRHD
Sbjct: 420 MEEIEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQLLRHDLP 479
Query: 478 LYTVRIQSHLADVPDYIVPPALKKLAR 504
L+ ++ HL VPDY+VPPAL+ L R
Sbjct: 480 LHPAVVKPHLGHVPDYLVPPALRGLVR 506
>gi|119581499|gb|EAW61095.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56, isoform CRA_c [Homo
sapiens]
Length = 547
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 236/507 (46%), Positives = 325/507 (64%), Gaps = 51/507 (10%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+ LGW PTLIQE+AIPL L+ KD+L RARTGSGKT A+AIPM+Q +++ K V
Sbjct: 19 LQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQLLLHRKAVGPV 78
Query: 90 --QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
Q + LVL P+KEL Q IQ+L C+RDV+ ++S D Q +L+E+PD+V
Sbjct: 79 VEQAVRGLVLVPTKELARQAQSMIQQLATYCARDVRVANVSAAEDSVSQRAVLMEKPDVV 138
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
V TP+R L+HL+ +L L+ SLE++++DEADL+FSFG+E+++K++L LP++YQA L SA
Sbjct: 139 VGTPSRILSHLQQDSLKLRDSLELLVVDEADLLFSFGFEEELKSLLCHLPRIYQAFLMSA 198
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQ-EDEKATILYTLLKLNLVQ 266
T +EDV +LK LIL NPV LKL+E + QL + ++ + E++K +LY LLKL+L++
Sbjct: 199 TFNEDVQALKELILHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLLLYALLKLSLIR 258
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
GK+++FVNT+++ Y+L+L+LEQF I TCVLN ELP ++RCH + QFNQG YD +IA+D +
Sbjct: 259 GKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGELPLRSRCHIISQFNQGFYDCVIATDAE 318
Query: 327 ALETPQINSTNNRKRKRDK----ESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTAR 382
L P R K DK E+GV+RGIDF VS V+NFD P + YIHRAGRTAR
Sbjct: 319 VLGAPVKGKRRGRGPKGDKASDPEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTAR 378
Query: 383 GKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFN 442
N G L+FV EQ F + ++L++ N I+ PYQF
Sbjct: 379 ANNPGIVLTFVLPTEQ----------FHLGKIEELLSGENR---------GPILLPYQFR 419
Query: 443 LDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKA 477
++E++GF YR +DA RS YFEDNP DL+ LRHD
Sbjct: 420 MEEIEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQLLRHDLP 479
Query: 478 LYTVRIQSHLADVPDYIVPPALKKLAR 504
L+ ++ HL VPDY+VPPAL+ L R
Sbjct: 480 LHPAVVKPHLGHVPDYLVPPALRGLVR 506
>gi|427795535|gb|JAA63219.1| Putative atp-dependent rna helicase, partial [Rhipicephalus
pulchellus]
Length = 532
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 240/532 (45%), Positives = 330/532 (62%), Gaps = 57/532 (10%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AIAKLGW +PT IQE+A+PLIL+ KDVL RARTGSGKTG F +PMI +++ + Q
Sbjct: 22 LKAIAKLGWGKPTPIQEKAVPLILEGKDVLARARTGSGKTGGFCLPMIHRLMQYR-VDQE 80
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T+ ++L+P+KELC Q+ + + +L+ ++CVD+S D+++Q PLL ERP IVV
Sbjct: 81 PATRGIILAPTKELCGQIARCVSQLS---GTWLRCVDVSGTADLAIQRPLLAERPAIVVG 137
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP+R LAHLKA L LK LE+++IDEADLV SFG+E D+ +L LP Q IL SATL
Sbjct: 138 TPSRILAHLKAGHLTLK--LEMLVIDEADLVLSFGHEQDLNELLTRLPNKCQTILTSATL 195
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
S +VL+LK L LRN V LKL+E +LA Y I +ED+K +L L KL L+ GKT
Sbjct: 196 SPEVLNLKRLALRNAVTLKLQE-GEQDQQRLAQYVIRCEEDDKFALLCALFKLRLIVGKT 254
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
+IFV TVD+C+ +KL+LEQF + CVLNSELP +R + QFN+G Y++++ASDEK E
Sbjct: 255 LIFVTTVDRCFVVKLFLEQFGVRCCVLNSELPLASRALILNQFNEGRYEIMVASDEKGAE 314
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
++KR +D E GV RG+DFQ V+NVIN DFP +Q Y HR GRTARG +GTA
Sbjct: 315 VQDKAPKKSKKRNQDPEYGVCRGLDFQNVANVINLDFPATVQAYQHRVGRTARGDRKGTA 374
Query: 390 LSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGF 449
LS V RE L+ E + L E +KPY F ++E++ F
Sbjct: 375 LSLVKDREAHLL---------------------EAVQKALPEG--TLKPYLFRMEEIEPF 411
Query: 450 EYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKALYTVRIQ 484
YR+KDA+R+ ++FE+NP + + LRHDKAL+ ++ Q
Sbjct: 412 RYRSKDAFRAVTRIAVREARLKEIKTEMLSSQKLQSFFEENPRERQLLRHDKALHIIKHQ 471
Query: 485 SHLADVPDYIVPPALKKLARIED--DGDEDVRAEPITDEEYNKQYEEYKKRS 534
HL PDYI+PP L++ + E + P+T E N++Y + +R+
Sbjct: 472 PHLKHCPDYIIPPTLQRTLQKEGATKAPQQPVKRPMTREAKNRKYGKKPRRN 523
>gi|48146543|emb|CAG33494.1| DDX56 [Homo sapiens]
Length = 547
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 236/507 (46%), Positives = 325/507 (64%), Gaps = 51/507 (10%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+ LGW TLIQE+AIPL L+ KD+L RARTGSGKT A+AIPM+Q +++ K T V
Sbjct: 19 LQAVTDLGWSRSTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQLLLHRKATGPV 78
Query: 90 --QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
Q + LVL P+KEL Q IQ+L C+RDV+ ++S D Q +L+E+PD+V
Sbjct: 79 VEQAVRGLVLVPTKELARQAQSMIQQLATYCARDVRVANVSAAEDSVSQRAVLMEKPDVV 138
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
V TP+R L+HL+ +L L+ SLE++++DEADL+FSFG+E+++K++L LP++YQA L SA
Sbjct: 139 VGTPSRILSHLQQDSLKLRDSLELLVVDEADLLFSFGFEEELKSLLCHLPRIYQAFLMSA 198
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQ-EDEKATILYTLLKLNLVQ 266
T +EDV +LK LIL NPV LKL+E + QL + ++ + E++K +LY LLKL+L++
Sbjct: 199 TFNEDVQALKELILHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLLLYALLKLSLIR 258
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
GK+++FVNT+++ Y+L+L+LEQF I TCVLN ELP ++RCH + QFNQG YD +IA+D +
Sbjct: 259 GKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGELPLRSRCHIISQFNQGFYDCVIATDAE 318
Query: 327 ALETPQINSTNNRKRKRDK----ESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTAR 382
L P R K DK E+GV+RGIDF VS V+NFD P + YIHRAGRTAR
Sbjct: 319 VLGAPVKGKRRGRGPKGDKASDPEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTAR 378
Query: 383 GKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFN 442
N G L+FV EQ F + ++L++ N I+ PYQF
Sbjct: 379 ANNPGIVLTFVLPTEQ----------FHLGKIEELLSGENR---------GPILLPYQFR 419
Query: 443 LDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKA 477
++E++GF YR +DA RS YFEDNP DL+ LRHD
Sbjct: 420 MEEIEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQLLRHDLP 479
Query: 478 LYTVRIQSHLADVPDYIVPPALKKLAR 504
L+ ++ HL VPDY+VPPAL+ L R
Sbjct: 480 LHPAVVKPHLGHVPDYLVPPALRGLVR 506
>gi|21312650|ref|NP_080814.1| probable ATP-dependent RNA helicase DDX56 [Mus musculus]
gi|20139152|sp|Q9D0R4.1|DDX56_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX56; AltName:
Full=ATP-dependent 61 kDa nucleolar RNA helicase;
AltName: Full=DEAD box protein 56
gi|12847068|dbj|BAB27426.1| unnamed protein product [Mus musculus]
gi|17390686|gb|AAH18291.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 [Mus musculus]
gi|26345784|dbj|BAC36543.1| unnamed protein product [Mus musculus]
gi|26346376|dbj|BAC36839.1| unnamed protein product [Mus musculus]
gi|74143954|dbj|BAE41278.1| unnamed protein product [Mus musculus]
gi|74204609|dbj|BAE35375.1| unnamed protein product [Mus musculus]
gi|74216851|dbj|BAE26549.1| unnamed protein product [Mus musculus]
gi|148708631|gb|EDL40578.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 [Mus musculus]
Length = 546
Score = 443 bits (1140), Expect = e-121, Method: Compositional matrix adjust.
Identities = 233/506 (46%), Positives = 325/506 (64%), Gaps = 53/506 (10%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+ LGW PTLIQE+AIPL L+ KD+L RARTGSGKT A+AIPM+Q +++ K T V
Sbjct: 19 LQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQSLLHKKATGPV 78
Query: 90 QE--TKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
E + LVL P+KEL Q IQ+L C+RDV+ ++S D + Q +L+E+PD+V
Sbjct: 79 MEQAVRGLVLVPTKELARQAQAMIQQLAAYCARDVRVANVSAAEDSASQRAVLMEKPDVV 138
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
V TP+R L+HL+ TL L+ SLE++++DEADL+FSFG+ED++K++L LP++YQA L SA
Sbjct: 139 VGTPSRVLSHLQQNTLKLRDSLELLVVDEADLLFSFGFEDELKSLLCHLPRIYQAFLMSA 198
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQ-EDEKATILYTLLKLNLVQ 266
T +EDV +LK L+L NPV LKL+E + QL + ++ + E++K +LY LLKL+L++
Sbjct: 199 TFNEDVQTLKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLLLYALLKLSLIR 258
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
GK ++FVNT+++ Y+L+L+LEQF I +CVLN ELP ++RCH + QFNQGLYD +IA+D +
Sbjct: 259 GKALLFVNTLERGYRLRLFLEQFSIPSCVLNGELPLRSRCHIISQFNQGLYDCVIATDAE 318
Query: 327 ALETPQINSTNNRK-----RKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTA 381
L PQ+ + + D ESGV+RGIDF VS V+NFD P + Y+HRAGRTA
Sbjct: 319 IL-GPQVKGKRRGRGSKGNKASDPESGVARGIDFHHVSAVLNFDLPPTAEAYVHRAGRTA 377
Query: 382 RGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQF 441
R N G L+FV EQ + + +DL++ E I+ PYQF
Sbjct: 378 RANNPGIVLTFVLPAEQPFLG----------KIEDLLSGEGEAP---------ILLPYQF 418
Query: 442 NLDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDK 476
++E++ F YR +DA RS YFEDNP DL+ LRHD
Sbjct: 419 QMEEIESFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQLLRHDL 478
Query: 477 ALYTVRIQSHLADVPDYIVPPALKKL 502
L+ ++ HL VPDY+VP AL+ L
Sbjct: 479 PLHPAVVKPHLGHVPDYLVPAALRGL 504
>gi|26344992|dbj|BAC36145.1| unnamed protein product [Mus musculus]
Length = 546
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 233/506 (46%), Positives = 325/506 (64%), Gaps = 53/506 (10%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+ LGW PTLIQE+AIPL L+ KD+L RARTGSGKT A+AIPM+Q +++ K T V
Sbjct: 19 LQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQSLLHKKATGPV 78
Query: 90 --QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
Q + LVL P+KEL Q IQ+L C+RDV+ ++S D + Q +L+E+PD+V
Sbjct: 79 MEQAVRGLVLVPTKELARQAQAMIQQLAAYCARDVRVANVSAAEDSASQRAVLMEKPDVV 138
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
V TP+R L+HL+ TL L+ SLE++++DEADL+FSFG+ED++K++L LP++YQA L SA
Sbjct: 139 VGTPSRVLSHLQQNTLKLRDSLELLVVDEADLLFSFGFEDELKSLLCHLPRIYQAFLMSA 198
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQ-EDEKATILYTLLKLNLVQ 266
T +EDV +LK L+L NPV LKL+E + QL + ++ + E++K +LY LLKL+L++
Sbjct: 199 TFNEDVQTLKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLLLYALLKLSLIR 258
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
GK ++FVNT+++ Y+L+L+LEQF I +CVLN ELP ++RCH + QFNQGLYD +IA+D +
Sbjct: 259 GKALLFVNTLERGYRLRLFLEQFSIPSCVLNGELPLRSRCHIISQFNQGLYDCVIATDAE 318
Query: 327 ALETPQINSTNNRK-----RKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTA 381
L PQ+ + + D ESGV+RGIDF VS V+NFD P + Y+HRAGRTA
Sbjct: 319 IL-GPQVKGKRRGRGSKGNKASDPESGVARGIDFHHVSAVLNFDLPPTAEAYVHRAGRTA 377
Query: 382 RGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQF 441
R N G L+FV EQ + + +DL++ E I+ PYQF
Sbjct: 378 RANNPGIVLTFVLPAEQPFLG----------KIEDLLSGEGEAP---------ILLPYQF 418
Query: 442 NLDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDK 476
++E++ F YR +DA RS YFEDNP DL+ LRHD
Sbjct: 419 QMEEIESFRYRCRDAMRSVTKQAIREARLKEIKEELLHSGKLKTYFEDNPRDLQLLRHDL 478
Query: 477 ALYTVRIQSHLADVPDYIVPPALKKL 502
L+ ++ HL VPDY+VP AL+ L
Sbjct: 479 PLHPAVVKPHLGHVPDYLVPAALRGL 504
>gi|301777320|ref|XP_002924074.1| PREDICTED: probable ATP-dependent RNA helicase DDX56-like
[Ailuropoda melanoleuca]
Length = 545
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 235/505 (46%), Positives = 322/505 (63%), Gaps = 51/505 (10%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQAIA LGW PTLIQE+AIPL L+ KD+L RARTGSGKT A+AIP +Q +++ K T
Sbjct: 19 LQAIADLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPALQLLLHRKATGPA 78
Query: 90 --QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
Q + LVL P+KEL Q IQ+L C+RD++ D+S D + Q +L+E+PD+V
Sbjct: 79 VEQAVRGLVLVPTKELARQARSMIQQLAAYCARDIRVADVSAAEDSASQRAVLMEKPDMV 138
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
V TP+R L HL+ +L L+ SLE++++DEADL+FSFG+E+++K++L LP++YQA L SA
Sbjct: 139 VGTPSRVLNHLQQDSLVLRDSLELLVLDEADLLFSFGFEEELKSLLCHLPRIYQAFLMSA 198
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQ-EDEKATILYTLLKLNLVQ 266
T +EDV +LK L+L NPV LKL+E + QL + ++ Q E++K +LY LLKL+LV+
Sbjct: 199 TFNEDVQALKELVLHNPVTLKLQESQLPGPDQLRQFQVVCQTEEDKFLLLYALLKLSLVR 258
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
GK+++FVNT+D+ Y+L+L+LEQF I TCVLN ELP +RCH + QFNQG YD +IA+D +
Sbjct: 259 GKSLLFVNTLDRSYRLRLFLEQFSIPTCVLNGELPLCSRCHIISQFNQGFYDCVIATDAE 318
Query: 327 ALETPQINSTNNRKRKRDK----ESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTAR 382
L P R K D+ E+GV+RGIDF VS V+NFD P + YIHRAGRTAR
Sbjct: 319 VLGAPVKGKRRGRGSKGDRASDPEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTAR 378
Query: 383 GKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFN 442
N G L+FV EQ ++ ++L+ N ++ PYQF
Sbjct: 379 ANNPGMVLTFVLPTEQSHLHT----------IEELLRGEN---------GAPVLLPYQFR 419
Query: 443 LDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKA 477
++E++GF YR +DA RS YFEDNP DL+ LRHD
Sbjct: 420 MEEIEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSERLKTYFEDNPRDLQLLRHDLP 479
Query: 478 LYTVRIQSHLADVPDYIVPPALKKL 502
L+ ++ HL VPDY+VPPAL+ L
Sbjct: 480 LHPAVVKPHLGHVPDYLVPPALRGL 504
>gi|440903065|gb|ELR53772.1| Putative ATP-dependent RNA helicase DDX56 [Bos grunniens mutus]
Length = 546
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 230/505 (45%), Positives = 323/505 (63%), Gaps = 51/505 (10%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+ LGW PTLIQE+AIPL L+ KD+L RARTGSGKT A+AIPM+Q +++ K T V
Sbjct: 19 LQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQLLLHRKATGPV 78
Query: 90 --QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
Q +ALVL P+KEL Q IQ+L C+RD++ ++S D + Q +L+E+PD+V
Sbjct: 79 VEQAVRALVLVPTKELARQAQSMIQQLAAYCARDIRVANVSAAEDSASQRAVLMEKPDVV 138
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
V TP+R L HL+ L L+ S+E++++DEADL+FSFG+E+++K++L LP++YQA L SA
Sbjct: 139 VGTPSRILNHLQQDNLKLRDSMELLVVDEADLLFSFGFEEELKSLLCHLPRIYQAFLMSA 198
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQ-EDEKATILYTLLKLNLVQ 266
T +EDV +LK L+L NPV LKL+E + QL + ++ + E++K +LY LLKL+L++
Sbjct: 199 TFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLLLYALLKLSLIR 258
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
GK+++FVNT+++ Y+L+L+LEQF I CVLN ELP ++RCH + QFNQG YD +IA+D +
Sbjct: 259 GKSLLFVNTLERSYRLRLFLEQFSIPACVLNGELPLRSRCHIISQFNQGFYDCVIATDAE 318
Query: 327 ALETPQINSTNNRKRKRDK----ESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTAR 382
L P + KRDK E+GV+RGIDF V V+NFD P + YIHRAGRTAR
Sbjct: 319 VLGPPVKGKHRGKGPKRDKASDPEAGVARGIDFHHVCAVLNFDLPPTPEAYIHRAGRTAR 378
Query: 383 GKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFN 442
N G L+FV EQ + + E L + ++ PYQF+
Sbjct: 379 AN-----------------NPGIVLTFVLPTEQSQLGKIEELLSGD--SGAPVLLPYQFH 419
Query: 443 LDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKA 477
++E++GF YR +DA RS YFEDNP DL+ LRHD
Sbjct: 420 MEEIEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQLLRHDLP 479
Query: 478 LYTVRIQSHLADVPDYIVPPALKKL 502
L+ ++ HL +VPDY+VPPAL+ L
Sbjct: 480 LHPAVVKPHLGNVPDYLVPPALRGL 504
>gi|77735611|ref|NP_001029501.1| probable ATP-dependent RNA helicase DDX56 [Bos taurus]
gi|122140173|sp|Q3SZ40.1|DDX56_BOVIN RecName: Full=Probable ATP-dependent RNA helicase DDX56; AltName:
Full=DEAD box protein 56
gi|74267874|gb|AAI03170.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 [Bos taurus]
gi|296488364|tpg|DAA30477.1| TPA: probable ATP-dependent RNA helicase DDX56 [Bos taurus]
Length = 546
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 230/505 (45%), Positives = 323/505 (63%), Gaps = 51/505 (10%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+ LGW PTLIQE+AIPL L+ KD+L RARTGSGKT A+AIPM+Q +++ K T V
Sbjct: 19 LQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQLLLHRKATGPV 78
Query: 90 --QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
Q +ALVL P+KEL Q IQ+L C+RD++ ++S D + Q +L+E+PD+V
Sbjct: 79 VEQAVRALVLVPTKELARQAQSMIQQLAAYCARDIRVANVSAAEDSASQRAVLMEKPDVV 138
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
V TP+R L HL+ L L+ S+E++++DEADL+FSFG+E+++K++L LP++YQA L SA
Sbjct: 139 VGTPSRILNHLQQDNLKLRDSMELLVVDEADLLFSFGFEEELKSLLCHLPRIYQAFLMSA 198
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQ-EDEKATILYTLLKLNLVQ 266
T +EDV +LK L+L NPV LKL+E + QL + ++ + E++K +LY LLKL+L++
Sbjct: 199 TFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLLLYALLKLSLIR 258
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
GK+++FVNT+++ Y+L+L+LEQF I CVLN ELP ++RCH + QFNQG YD +IA+D +
Sbjct: 259 GKSLLFVNTLERSYRLRLFLEQFSIPACVLNGELPLRSRCHIISQFNQGFYDCVIATDAE 318
Query: 327 ALETPQINSTNNRKRKRDK----ESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTAR 382
L P + KRDK E+GV+RGIDF V V+NFD P + YIHRAGRTAR
Sbjct: 319 VLGPPVKGKHRGKGPKRDKASDPEAGVARGIDFHHVCAVLNFDLPPTPEAYIHRAGRTAR 378
Query: 383 GKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFN 442
N G L+FV EQ + + E L + ++ PYQF+
Sbjct: 379 AN-----------------NPGIVLTFVLPTEQSQLGKIEELLSGD--SGAPVLLPYQFH 419
Query: 443 LDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKA 477
++E++GF YR +DA RS YFEDNP DL+ LRHD
Sbjct: 420 MEEIEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQLLRHDLP 479
Query: 478 LYTVRIQSHLADVPDYIVPPALKKL 502
L+ ++ HL +VPDY+VPPAL+ L
Sbjct: 480 LHPAVVKPHLGNVPDYLVPPALRGL 504
>gi|354485265|ref|XP_003504804.1| PREDICTED: probable ATP-dependent RNA helicase DDX56 [Cricetulus
griseus]
gi|344252527|gb|EGW08631.1| putative ATP-dependent RNA helicase DDX56 [Cricetulus griseus]
Length = 545
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 233/505 (46%), Positives = 322/505 (63%), Gaps = 52/505 (10%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+A LGW +PTLIQE+AIPL L+ KD+L RARTGSGKT A+AIPM+Q +++ K T V
Sbjct: 19 LQAVADLGWSQPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQLLLHKKATGPV 78
Query: 90 QE--TKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
E + LVL P+KEL Q +Q+L C+RDV+ ++S D + Q +L+E+PD+V
Sbjct: 79 MEQAVRGLVLVPTKELARQAQSMMQQLAAYCARDVRVANVSAAEDSASQRAVLMEKPDVV 138
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
V TP+R L HL+ L L+ SLE+++IDEADL+FSFG+ED++K +L LP++YQA L SA
Sbjct: 139 VGTPSRILNHLQQDNLKLRDSLELLVIDEADLLFSFGFEDELKGLLCHLPRIYQAFLMSA 198
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQ-EDEKATILYTLLKLNLVQ 266
T +EDV +LK L+L NPV LKL+E + QL + ++ + E++K +LY LLKL+L++
Sbjct: 199 TFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLLLYALLKLSLIR 258
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
GK ++FVNT+++ Y+L+L+LEQF I +CVLN ELP ++RCH + QFNQG YD +IA+D +
Sbjct: 259 GKALLFVNTLERGYRLRLFLEQFSIPSCVLNGELPLRSRCHIISQFNQGFYDCVIATDAE 318
Query: 327 ALETPQINSTNNRKRKRDK----ESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTAR 382
L P R K DK ESGV+RGIDF VS V+NFD P + Y+HRAGRTAR
Sbjct: 319 ILGPPVKGKRRGRGSKGDKAADPESGVARGIDFHHVSAVLNFDLPPTPEAYVHRAGRTAR 378
Query: 383 GKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFN 442
N G L+FV EQ + E L++ E + I+ PYQF
Sbjct: 379 ANNPGIVLTFVLPTEQSCLAK------------------IEALLSG--EGEAILLPYQFR 418
Query: 443 LDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKA 477
++E++ F YR +DA RS YFEDNP DL+ LRHD
Sbjct: 419 MEEIESFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQLLRHDLP 478
Query: 478 LYTVRIQSHLADVPDYIVPPALKKL 502
L+ ++ HL +VPDY+VP AL+ +
Sbjct: 479 LHPAVVKPHLGNVPDYLVPAALRGI 503
>gi|410951930|ref|XP_003982643.1| PREDICTED: probable ATP-dependent RNA helicase DDX56 [Felis catus]
Length = 547
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 230/505 (45%), Positives = 320/505 (63%), Gaps = 51/505 (10%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+A LGW PTLIQE+AIPL L+ KD+L RARTGSGKT A+AIPM+Q +++ K T
Sbjct: 19 LQAVADLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQLLLHRKATGPA 78
Query: 90 --QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
Q + LVL P+KEL Q +Q+L C+RD++ D+S D + Q +L+E+PDIV
Sbjct: 79 VEQAVRGLVLVPTKELARQARSMVQQLAAYCARDIRVADVSAAEDSASQRAVLMEKPDIV 138
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
V TP+R L HL+ +L L+ SLE++++DEADL+FSFG+E+++K++L LP++YQA L SA
Sbjct: 139 VGTPSRILNHLQQDSLTLRDSLELLVVDEADLLFSFGFEEELKSLLCHLPRIYQAFLMSA 198
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQ-EDEKATILYTLLKLNLVQ 266
T +EDV +LK L+L NPV LKL+E + QL + ++ + E++K +LY LLKL+L++
Sbjct: 199 TFNEDVQALKELVLHNPVTLKLQESQLPGPDQLKQFQVVCETEEDKFLLLYALLKLSLIR 258
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
GK+++FVNT+++ Y+L+L+LEQF I CVLN ELP ++RCH + QFNQG YD +IA+D +
Sbjct: 259 GKSLLFVNTLERSYRLRLFLEQFGIPACVLNGELPLRSRCHIISQFNQGFYDCVIATDTE 318
Query: 327 ALETPQINSTNNRK----RKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTAR 382
L P + R D E+GV+RGIDF V V+NFD P + YIHRAGRTAR
Sbjct: 319 VLGAPVKGKRRGKGPKGDRASDPEAGVARGIDFHHVCAVLNFDLPPTPEAYIHRAGRTAR 378
Query: 383 GKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFN 442
N G L+FV EQ + D E L+ +E ++ PYQF
Sbjct: 379 ANNPGMVLTFVLPAEQSHL------------------DTIEELLCGENEAPVLL-PYQFR 419
Query: 443 LDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKA 477
++E++ F YR +DA RS YFEDNP DL+ LRHD
Sbjct: 420 MEEIEAFRYRCRDAMRSVTKQAIREARLKEIKEELLHSERLKTYFEDNPRDLQLLRHDLP 479
Query: 478 LYTVRIQSHLADVPDYIVPPALKKL 502
L+ ++ HL VPDY+VPPAL+ L
Sbjct: 480 LHPAVVKPHLGHVPDYLVPPALRGL 504
>gi|149047667|gb|EDM00337.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 [Rattus norvegicus]
Length = 546
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 234/506 (46%), Positives = 327/506 (64%), Gaps = 53/506 (10%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+ LGW PTLIQE+AIPL L+ KD+L RARTGSGKT A+AIPM+Q +++ K T V
Sbjct: 19 LQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQLLLHKKATGPV 78
Query: 90 QE--TKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
E + LVL P+KEL Q IQ+L C+RDV+ ++S D + Q +L+E+PD+V
Sbjct: 79 MEQAVRGLVLVPTKELARQAQSMIQQLASYCARDVRVANVSAAEDSASQRAVLMEKPDVV 138
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
V TP+R L HL+ K L L+ SLE++++DEADL+FSFG+ED++K++L LP++YQA L SA
Sbjct: 139 VGTPSRILNHLQQKNLKLRDSLELLVVDEADLLFSFGFEDELKSLLCHLPRIYQAFLMSA 198
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQ-EDEKATILYTLLKLNLVQ 266
T +EDV +LK L+L NPV LKL+E + QL + ++ + E++K +LY LLKL+L++
Sbjct: 199 TFNEDVQTLKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLLLYALLKLSLIR 258
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
GK ++FVNT+++ Y+L+L+LEQF I +CVLN ELP ++RCH + QFNQGLYD +IA+D +
Sbjct: 259 GKALLFVNTLERGYRLRLFLEQFSIPSCVLNGELPLRSRCHIISQFNQGLYDCVIATDAE 318
Query: 327 ALETPQINST-NNRKRKRDK----ESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTA 381
L PQ+ + R K DK ESGV+RGIDF VS V+NFD P + Y+HRAGRTA
Sbjct: 319 IL-GPQVKAKRQGRGSKGDKASDPESGVARGIDFHHVSAVLNFDLPPTAEAYVHRAGRTA 377
Query: 382 RGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQF 441
R N G L+FV EQ + + ++L++ + I+ PYQF
Sbjct: 378 RANNPGIVLTFVLPTEQSSLG----------KIEELLSGEGQAP---------ILLPYQF 418
Query: 442 NLDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDK 476
++E++ F YR +DA RS YFEDNP DL+ LRHD
Sbjct: 419 QMEEIESFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQLLRHDL 478
Query: 477 ALYTVRIQSHLADVPDYIVPPALKKL 502
L+ ++ HL +VPDY+VP AL+ L
Sbjct: 479 PLHPAVVKPHLGNVPDYLVPAALRGL 504
>gi|355560653|gb|EHH17339.1| Putative ATP-dependent RNA helicase DDX56 [Macaca mulatta]
Length = 529
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 228/499 (45%), Positives = 320/499 (64%), Gaps = 51/499 (10%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+ +GW PTLIQE+AIPL L+ KD+L RARTGSGKT A+AIPM+Q +++ K T V
Sbjct: 19 LQAVTDMGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQLLLHRKATGPV 78
Query: 90 --QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
Q + LVL P+KEL Q IQ+L C+RDV+ ++S D + Q +L+E+PD+V
Sbjct: 79 VEQAVRGLVLVPTKELARQAQSMIQQLATYCARDVRVANVSAAEDSASQRAMLMEKPDVV 138
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
V TP+R L+HL+ +L L+ SLE++++DEADL+FSFG+E+++K++L LP++YQA L SA
Sbjct: 139 VGTPSRILSHLQQDSLKLRDSLELLVVDEADLLFSFGFEEELKSLLCHLPRIYQAFLMSA 198
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQ-EDEKATILYTLLKLNLVQ 266
T +EDV +LK L+L NPV LKL+E + QL + ++ + E++K +LY LLKL+L++
Sbjct: 199 TFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLLLYALLKLSLIR 258
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
GK+++FVNT+++ Y+L+L+LEQF I TCVLN ELP ++RCH + QFNQG YD +IA+D +
Sbjct: 259 GKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGELPLRSRCHIISQFNQGFYDCVIATDAE 318
Query: 327 ALETPQINSTNNRKRKRDK----ESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTAR 382
L P R K DK E+GV+RGIDF VS V+NFD P + YIHRAGRTAR
Sbjct: 319 VLGAPVKGKRRGRGPKGDKASDPEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTAR 378
Query: 383 GKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFN 442
N G L+FV EQ + + ++L++ N I+ PYQF
Sbjct: 379 ANNPGIVLTFVLPTEQSHLG----------KIEELLSGENR---------GPILLPYQFR 419
Query: 443 LDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKA 477
++E++GF YR +DA RS YFEDNP DL+ LRHD
Sbjct: 420 MEEIEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQLLRHDLP 479
Query: 478 LYTVRIQSHLADVPDYIVP 496
L+ ++ HL VPDY+ P
Sbjct: 480 LHPAVVKPHLGHVPDYLAP 498
>gi|417402574|gb|JAA48132.1| Putative atp-dependent rna helicase [Desmodus rotundus]
Length = 545
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 229/507 (45%), Positives = 318/507 (62%), Gaps = 51/507 (10%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+ LGW PTLIQE+AIPL L+ KD+L RARTGSGKT A+AIPM+Q +++ K T
Sbjct: 19 LQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQLLLHRKATGPA 78
Query: 90 --QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
Q + LVL P+KEL Q IQ+L C+RD++ ++S D + Q +L+E+PD+V
Sbjct: 79 VEQAVRGLVLVPTKELARQAQSMIQQLAAYCARDIRVANVSAAEDSASQRAVLMEKPDVV 138
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
V TP+R L HL+ +L L+ SLE++++DEADL+FSFG+E+++K++L LP++YQA L SA
Sbjct: 139 VGTPSRILNHLQQDSLKLRDSLELLVMDEADLLFSFGFEEELKSLLCHLPRIYQAFLMSA 198
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILA-QEDEKATILYTLLKLNLVQ 266
T +EDV +LK L+L NPV LKL+E + QL + ++ E++K +LY LLKL+L++
Sbjct: 199 TFNEDVQTLKELVLHNPVTLKLQESQLPGPEQLQQFQVVCDMEEDKFLLLYALLKLSLIR 258
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
GK+++FVNT+++ Y+L+L+LEQF I CVLN ELP ++RCH + QFNQG YD +IA+D +
Sbjct: 259 GKSLLFVNTLERSYRLRLFLEQFSIPACVLNGELPLRSRCHIISQFNQGFYDCVIATDAE 318
Query: 327 ALETP----QINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTAR 382
L P + R D E+GV+RGIDF VS V+NFD P + YIHRAGRTAR
Sbjct: 319 VLGAPVKGKHRGTGPKGDRASDPEAGVARGIDFHHVSAVLNFDLPPSPEAYIHRAGRTAR 378
Query: 383 GKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFN 442
N G L+FV EQ + + E L + PYQF+
Sbjct: 379 AN-----------------NPGIVLTFVLPTEQSQLGKIEELLDGETGAPALL--PYQFH 419
Query: 443 LDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKA 477
++E++GF YR +DA RS YFEDNP DL+ LRHD
Sbjct: 420 MEEIEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQLLRHDLP 479
Query: 478 LYTVRIQSHLADVPDYIVPPALKKLAR 504
L+ ++ HL VPDY+VPPAL+ L R
Sbjct: 480 LHPAVVKPHLGHVPDYLVPPALRGLVR 506
>gi|344293830|ref|XP_003418623.1| PREDICTED: probable ATP-dependent RNA helicase DDX56 [Loxodonta
africana]
Length = 545
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 227/503 (45%), Positives = 321/503 (63%), Gaps = 51/503 (10%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+ LGW PTLIQE+AIPL L+ KD+L RARTGSGKT A+A+PM+Q +++ K T V
Sbjct: 18 LQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYALPMLQLLLHRKATGPV 77
Query: 90 --QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
Q + LVL P+KEL Q IQ+L C+RD++ D+S + Q +L+E+PD+V
Sbjct: 78 VEQAVRVLVLVPTKELAKQAQSMIQQLATYCARDIRVADVSAAEHSASQRAVLIEKPDVV 137
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
V TP+R L+HL+ L L SLE++++DEADL+FSFG+E+++K++L LP++YQA L SA
Sbjct: 138 VGTPSRILSHLQQDNLKLHDSLELLVMDEADLLFSFGFEEELKSLLCHLPRIYQAFLMSA 197
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQ-EDEKATILYTLLKLNLVQ 266
T +EDV +LK L+L NPV LKL+E + QL + ++ + E++K +LY LLKL+L++
Sbjct: 198 TFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLLLYALLKLSLIR 257
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
GK+++FVNT+++ Y+L+L+LEQF I CVLN ELP ++RCH + QFNQG YD +IA+D +
Sbjct: 258 GKSLLFVNTLERSYRLRLFLEQFSIPACVLNGELPLRSRCHIISQFNQGFYDCVIATDAE 317
Query: 327 ALETPQINSTNNRKRKRDK----ESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTAR 382
L P R K D+ E+GV+RGIDF VS V+NFD P + YIHRAGRTAR
Sbjct: 318 VLGAPVKGKHRGRGAKGDRASDPEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTAR 377
Query: 383 GKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFN 442
N G L+FV EQ + + ++L++ N ++ PYQF
Sbjct: 378 ASNPGVVLTFVLPAEQAHLG----------KIEELLSGENGVP---------VLLPYQFR 418
Query: 443 LDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKA 477
++E++GF YR +DA RS YFEDNP DL+ LRHD
Sbjct: 419 MEEIEGFRYRCRDAMRSVTKQAIREARLKEVKEELLRSEKLKTYFEDNPRDLQLLRHDLP 478
Query: 478 LYTVRIQSHLADVPDYIVPPALK 500
L+ ++ HL +VPDY+VPP L+
Sbjct: 479 LHPAVVKPHLGNVPDYLVPPTLR 501
>gi|426227857|ref|XP_004008031.1| PREDICTED: probable ATP-dependent RNA helicase DDX56 isoform 1
[Ovis aries]
Length = 552
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 230/511 (45%), Positives = 324/511 (63%), Gaps = 57/511 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+ LGW PTLIQE+AIPL L+ KD+L RARTGSGKT A+AIPM+Q +++ K T V
Sbjct: 19 LQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQLLLHRKATGPV 78
Query: 90 --QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
Q +ALVL P+KEL Q IQ+L C+RD++ ++S D++ Q +L+E+PD+V
Sbjct: 79 VEQAVRALVLVPTKELARQAQSMIQQLAAYCARDIRVANVSAAEDLASQRAVLMEKPDVV 138
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
V TP+R L HL+ L L+ S+E++++DEADL+FSFG+E+++K++L LP++YQA L SA
Sbjct: 139 VGTPSRILNHLQQDNLKLRDSMELLVVDEADLLFSFGFEEELKSLLCHLPRIYQAFLMSA 198
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQ-EDEKATILYTLLKLNLVQ 266
T +EDV +LK L+L NPV LKL+E + QL + ++ + E++K +LY LLKL+L++
Sbjct: 199 TFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLLLYALLKLSLIR 258
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
GK+++FVNT+++ Y+L+L+LEQF I CVLN ELP ++RCH + QFNQG YD +IA+D +
Sbjct: 259 GKSLLFVNTLERSYRLRLFLEQFSIPACVLNGELPLRSRCHIISQFNQGFYDCVIATDAE 318
Query: 327 ALETPQINSTNNRKRKRDK----ESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTAR 382
L P + KRDK E+GV+RGIDF V V+NFD P + YIHRAGRTAR
Sbjct: 319 VLGPPVKGKHRGKGPKRDKASDPEAGVARGIDFHHVCAVLNFDLPPTPEAYIHRAGRTAR 378
Query: 383 GKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFN 442
N G L+FV EQ + + E L + ++ PYQF+
Sbjct: 379 AN-----------------NPGIVLTFVLPTEQSQLGKIEELLSGD--SGAPVLLPYQFH 419
Query: 443 LDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKA 477
++E++GF YR +DA RS YFEDNP DL+ LRHD
Sbjct: 420 MEEIEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQLLRHDLP 479
Query: 478 LYTVRIQSHLADVPDY------IVPPALKKL 502
L+ ++ HL +VPDY +VPPAL+ L
Sbjct: 480 LHPAVVKPHLGNVPDYLVQLLTLVPPALRGL 510
>gi|444517809|gb|ELV11805.1| Niemann-Pick C1-like protein 1 [Tupaia chinensis]
Length = 1837
Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust.
Identities = 228/514 (44%), Positives = 324/514 (63%), Gaps = 58/514 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA++ LGW PTLIQE+AIPL L KD+L RARTGSGKT A+A+PM+Q +++ K
Sbjct: 19 LQAVSDLGWSRPTLIQEKAIPLALDGKDLLARARTGSGKTAAYALPMLQLLLHGKTVGSP 78
Query: 90 ---QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDI 146
Q + LVL P+KEL Q IQ+L C+RD++ ++S D + Q +L+E+PDI
Sbjct: 79 VVEQAVRGLVLVPTKELARQAQSMIQQLATYCARDIRVANVSAAEDAASQRAVLMEKPDI 138
Query: 147 VVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
VV TP+R L+HL+ +L L+ S+E++++DEADL+FSFG+E+++K++L LP++YQA L S
Sbjct: 139 VVGTPSRILSHLQRDSLKLRDSMELLVVDEADLLFSFGFEEELKSLLCHLPRIYQAFLMS 198
Query: 207 ATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDE-------KATILYTL 259
AT +EDV +LK L+L NPV LKL+E + QL + ++ + +E +LY L
Sbjct: 199 ATFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVICETEEDKLLLLFFFLLLYAL 258
Query: 260 LKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDV 319
LKL+LV+GK+++FVNT+++ Y+L+L+LEQF I +CVLN ELP ++RCH + QFNQG YD
Sbjct: 259 LKLSLVRGKSLLFVNTLERSYRLRLFLEQFSIPSCVLNGELPLRSRCHIISQFNQGFYDC 318
Query: 320 IIASDEKALETPQINSTNNRKRKRDK----ESGVSRGIDFQFVSNVINFDFPLDIQCYIH 375
+IA+D + L P R K +K E+GV+RGIDF VS V+NFD P + YIH
Sbjct: 319 VIATDAEVLGAPVKGKRQGRGPKANKASDPEAGVARGIDFHHVSAVLNFDLPPTPEAYIH 378
Query: 376 RAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFI 435
RAGRTAR N GT L+FV E+ +N + ++L+ N +
Sbjct: 379 RAGRTARANNPGTVLTFVLPVERPHLN----------KIEELLGGENRAP---------V 419
Query: 436 IKPYQFNLDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLE 470
+ PYQF ++E++GF YR +DA RS YFEDNP DL+
Sbjct: 420 LLPYQFRMEEIEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQ 479
Query: 471 TLRHDKALYTVRIQSHLADVPDYIVPPALKKLAR 504
LRHD L+ ++ HL VP+Y+VPPAL+ L R
Sbjct: 480 LLRHDLPLHPAVVKPHLGHVPEYLVPPALRGLVR 513
>gi|149704807|ref|XP_001495871.1| PREDICTED: probable ATP-dependent RNA helicase DDX56 [Equus
caballus]
Length = 546
Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust.
Identities = 227/505 (44%), Positives = 317/505 (62%), Gaps = 51/505 (10%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+ LGW PTLIQE+AIPL L+ KD+L RARTGSGKT A+AIPM+Q +++ K T
Sbjct: 19 LQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQLLLHRKATGPA 78
Query: 90 --QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
Q + LVL P+KEL Q IQ+L C+RD++ ++S D + Q +L+E+PD+V
Sbjct: 79 VEQAVRGLVLVPTKELARQAQSMIQQLAAYCARDIRVANVSAAEDSASQRAVLMEKPDVV 138
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
V TP+R L HL+ +L L+ SLE++++DEADL+FSFG+E+++K++L LP++YQA L SA
Sbjct: 139 VGTPSRILNHLQQDSLKLRDSLELLVVDEADLLFSFGFEEELKSLLCHLPRIYQAFLMSA 198
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQ-EDEKATILYTLLKLNLVQ 266
T +EDV +LK L+L NPV LKL+E + QL + ++ + E++K +LY LLKL+L++
Sbjct: 199 TFNEDVQALKELVLHNPVTLKLQESQLPGPEQLQQFQVVCETEEDKFLLLYALLKLSLIR 258
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
GK+++FVNT+++ Y+L+L+LEQF I TCVLN ELP ++RCH + QFNQG YD +IA+D +
Sbjct: 259 GKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGELPLRSRCHIISQFNQGFYDCVIATDAE 318
Query: 327 ALETPQINSTNNRK----RKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTAR 382
L P + R D E+GV+RGIDF V V+NFD P + YIHRAGRTAR
Sbjct: 319 VLGAPVKGKRQGKGPKGDRASDPEAGVARGIDFHHVCAVLNFDLPPTPEAYIHRAGRTAR 378
Query: 383 GKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFN 442
N G L+FV EQ + + E L ++ PYQF
Sbjct: 379 AN-----------------NPGIVLTFVLPTEQSHLGKIEELLGGE--STAPVLLPYQFR 419
Query: 443 LDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKA 477
++E++GF YR +DA RS YFEDNP DL+ LRHD
Sbjct: 420 MEEIEGFRYRCRDAMRSVTKQSIREARLKEIKEELLHSEKLKTYFEDNPRDLQLLRHDLP 479
Query: 478 LYTVRIQSHLADVPDYIVPPALKKL 502
L+ ++ HL VPDY+VP AL+ L
Sbjct: 480 LHPAVVKPHLGHVPDYLVPSALRGL 504
>gi|347300354|ref|NP_001231472.1| probable ATP-dependent RNA helicase DDX56 [Sus scrofa]
Length = 546
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 229/509 (44%), Positives = 322/509 (63%), Gaps = 53/509 (10%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+ LGW PTLIQE+AIPL L+ KD+L RARTGSGKT A+AIPM+Q +++ K
Sbjct: 19 LQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQLLLHRKAIGPA 78
Query: 90 --QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
Q + LVL P+K+L Q IQ+L C+RD++ ++S D + Q +L+E+PDIV
Sbjct: 79 VEQAVRGLVLVPTKDLARQAQSMIQQLAAYCARDIRVANVSAAEDSASQRAVLMEKPDIV 138
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
V TP+R L HL+ L L+ SLE++++DEADL+FSFG+E+++K++L LP++YQA L SA
Sbjct: 139 VGTPSRILNHLQQDNLKLRDSLELLVVDEADLLFSFGFEEELKSLLCHLPRIYQAFLMSA 198
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQ-EDEKATILYTLLKLNLVQ 266
T +EDV +LK L+L NPV LKL+E + QL + ++ + E++K +LY LLKL+L++
Sbjct: 199 TFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLLLYALLKLSLIR 258
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
GK+++FVNT+++ Y+L+L+LEQF I CVLN ELP ++RCH + QFNQGLYD +IA+D +
Sbjct: 259 GKSLLFVNTLERSYRLRLFLEQFSIPACVLNGELPLRSRCHIISQFNQGLYDCVIATDAE 318
Query: 327 ALETP------QINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRT 380
L P Q +R D E+GV+RGIDF V V+NFD P + YIHRAGRT
Sbjct: 319 VLGPPVKGKGKQRGKGPKGERASDPEAGVARGIDFHHVCGVLNFDLPPTPEAYIHRAGRT 378
Query: 381 ARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQ 440
AR N G L+FV EQ + + ++L++ N + PYQ
Sbjct: 379 ARANNPGIVLTFVLPTEQSHLG----------KIEELLSGEN---------GAPALLPYQ 419
Query: 441 FNLDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHD 475
F ++E++GF YR +DA RS YFEDNP DL+ LRHD
Sbjct: 420 FRMEEIEGFRYRRRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQLLRHD 479
Query: 476 KALYTVRIQSHLADVPDYIVPPALKKLAR 504
L+ ++ HL +VPDY+VPPAL+ L R
Sbjct: 480 LPLHPAVVKPHLGNVPDYLVPPALRGLVR 508
>gi|395850076|ref|XP_003797626.1| PREDICTED: probable ATP-dependent RNA helicase DDX56 [Otolemur
garnettii]
Length = 547
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 231/507 (45%), Positives = 321/507 (63%), Gaps = 51/507 (10%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+ LGW PTLIQE+AIPL L+ KD+L RARTGSGKT A+AIPM+Q +++ K T V
Sbjct: 19 LQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQLLLHRKATGPV 78
Query: 90 --QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
Q + LVL P+KEL Q IQ+L C+RDV+ ++S D + Q +L+E+PD+V
Sbjct: 79 VEQAVRGLVLVPTKELARQAQSMIQQLAAYCARDVRVANVSAADDSASQRAVLMEKPDVV 138
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
V TP+R L+HL+ L L SLE++++DEADL+FSFG+E+++K +L LP++YQA L SA
Sbjct: 139 VGTPSRILSHLQQDNLKLHDSLELLVVDEADLLFSFGFEEELKNLLCHLPRIYQAFLMSA 198
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILA-QEDEKATILYTLLKLNLVQ 266
T +EDV +LK L+L NPV LKL+E + QL + ++ E++K +LY LLKL+L++
Sbjct: 199 TFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCDTEEDKFLLLYALLKLSLIR 258
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
GK+++FVNT+++ Y+L+L+LEQF I TCVLN ELP ++RCH + QFNQG YD +IA+D +
Sbjct: 259 GKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGELPLRSRCHIISQFNQGFYDSVIATDAE 318
Query: 327 ALETP----QINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTAR 382
L P + + D E+GV+RGIDF VS V+NFD P + YIHRAGRTAR
Sbjct: 319 VLGPPAKGKRRGRGPRGDKGSDPEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTAR 378
Query: 383 GKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFN 442
N G L+FV E+ + D E L++ + ++ PYQF
Sbjct: 379 ANNLGIVLTFVLPTEKAHL------------------DKIEKLLSGENGAPVLL-PYQFR 419
Query: 443 LDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKA 477
++E++GF YR +DA RS YFEDNP DL+ LRHD
Sbjct: 420 MEEIEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQLLRHDLP 479
Query: 478 LYTVRIQSHLADVPDYIVPPALKKLAR 504
L+ ++ HL VPDY+VPPAL+ L R
Sbjct: 480 LHPAVVKPHLGHVPDYLVPPALRGLVR 506
>gi|281340691|gb|EFB16275.1| hypothetical protein PANDA_013325 [Ailuropoda melanoleuca]
Length = 496
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 229/497 (46%), Positives = 315/497 (63%), Gaps = 51/497 (10%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQAIA LGW PTLIQE+AIPL L+ KD+L RARTGSGKT A+AIP +Q +++ K T
Sbjct: 19 LQAIADLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPALQLLLHRKATGPA 78
Query: 90 --QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
Q + LVL P+KEL Q IQ+L C+RD++ D+S D + Q +L+E+PD+V
Sbjct: 79 VEQAVRGLVLVPTKELARQARSMIQQLAAYCARDIRVADVSAAEDSASQRAVLMEKPDMV 138
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
V TP+R L HL+ +L L+ SLE++++DEADL+FSFG+E+++K++L LP++YQA L SA
Sbjct: 139 VGTPSRVLNHLQQDSLVLRDSLELLVLDEADLLFSFGFEEELKSLLCHLPRIYQAFLMSA 198
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQ-EDEKATILYTLLKLNLVQ 266
T +EDV +LK L+L NPV LKL+E + QL + ++ Q E++K +LY LLKL+LV+
Sbjct: 199 TFNEDVQALKELVLHNPVTLKLQESQLPGPDQLRQFQVVCQTEEDKFLLLYALLKLSLVR 258
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
GK+++FVNT+D+ Y+L+L+LEQF I TCVLN ELP +RCH + QFNQG YD +IA+D +
Sbjct: 259 GKSLLFVNTLDRSYRLRLFLEQFSIPTCVLNGELPLCSRCHIISQFNQGFYDCVIATDAE 318
Query: 327 ALETPQINSTNNRKRKRDK----ESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTAR 382
L P R K D+ E+GV+RGIDF VS V+NFD P + YIHRAGRTAR
Sbjct: 319 VLGAPVKGKRRGRGSKGDRASDPEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTAR 378
Query: 383 GKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFN 442
N G L+FV EQ ++ ++L+ N ++ PYQF
Sbjct: 379 ANNPGMVLTFVLPTEQSHLHT----------IEELLRGEN---------GAPVLLPYQFR 419
Query: 443 LDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKA 477
++E++GF YR +DA RS YFEDNP DL+ LRHD
Sbjct: 420 MEEIEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSERLKTYFEDNPRDLQLLRHDLP 479
Query: 478 LYTVRIQSHLADVPDYI 494
L+ ++ HL VPDY+
Sbjct: 480 LHPAVVKPHLGHVPDYL 496
>gi|391337668|ref|XP_003743188.1| PREDICTED: probable ATP-dependent RNA helicase DDX56-like
[Metaseiulus occidentalis]
Length = 506
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 225/504 (44%), Positives = 320/504 (63%), Gaps = 49/504 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++AIA+LGW +PT IQE+AIP L+ KD+L RARTGSGKT FA+P IQK++ K
Sbjct: 21 VKAIARLGWKQPTPIQEQAIPFALKGKDILARARTGSGKTAGFAVPAIQKVLEAKAQGSS 80
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
Q LVL+PSKELC Q+ ++ L C V+ VD++E V +SV P L+E+PD+VV
Sbjct: 81 QNVTVLVLAPSKELCKQICRHFVALGQCCGGLVQVVDVAEHVQLSVLRPQLLEKPDVVVG 140
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP+R LAH+KA LD+ SSL+I+++DEADLVF+FG E D + +LK LP +YQAI++SATL
Sbjct: 141 TPSRILAHIKAGNLDV-SSLKILMVDEADLVFTFGQEKDTEQLLKQLPPIYQAIVSSATL 199
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+EDVLSLK L+L NP+ L+L+E ++ L Y + +E +K IL L +L L++GKT
Sbjct: 200 NEDVLSLKRLVLHNPITLRLDENSLTDNEGLTQYVVKCEELDKHAILAALFQLKLIKGKT 259
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
+IF+N+VD+ Y+ KL+L+QF + +CVLNSELP +R + +FN+G YDVI+ +D+ LE
Sbjct: 260 LIFLNSVDRGYRTKLFLDQFAVRSCVLNSELPLSSRQVVIDRFNEGRYDVIVVTDDSNLE 319
Query: 330 TPQINSTNNRKRKRDKES--GVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQG 387
Q + ++R E SRG+DFQFVSNVIN +FP ++ Y+HR GRTAR N+G
Sbjct: 320 ASQKSKKKKGSKQRQNEGEFAASRGLDFQFVSNVINLEFPPSVEAYVHRVGRTARAGNKG 379
Query: 388 TALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVK 447
TAL+FVS+RE + + A + E + KPY+F +DE++
Sbjct: 380 TALNFVSVREMPIYKEVEA--------------------RMIAEKKNMFKPYRFKIDEIE 419
Query: 448 GFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKALYTVR 482
GF+YRA+ A S +FE NP + LRHD+AL T
Sbjct: 420 GFKYRAQTALNSLQKKVIRDARLRDIKEEMLNSEKLKTFFESNPRETSLLRHDRALRTKG 479
Query: 483 IQ-SHLADVPDYIVPPALKKLARI 505
+ + L VP+YIVPP L+++ ++
Sbjct: 480 AKHTSLKHVPEYIVPPTLQRIMQV 503
>gi|449690217|ref|XP_002156431.2| PREDICTED: probable ATP-dependent RNA helicase DDX56-like [Hydra
magnipapillata]
Length = 534
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 226/507 (44%), Positives = 318/507 (62%), Gaps = 53/507 (10%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++AI+KLGW P+ IQ+RAIP L+ KD+++RA+TGSGKT A+ IP+IQKI+ K++ +
Sbjct: 15 VKAISKLGWATPSEIQKRAIPPALEGKDIIIRAKTGSGKTAAYLIPLIQKILKNKESNK- 73
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+T ++VL PSKELC Q ++N +LT CS+ V VD+ S L+ DI+++
Sbjct: 74 PKTLSVVLVPSKELCKQSYRNALDLTSYCSKLVSVVDLGNSTVQSSSS--LINNADILIS 131
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP++ LAH+ KT++LK L+ +I+DEAD++FS+GYE D+K + LPK+YQA+L SAT+
Sbjct: 132 TPSKILAHINNKTINLKDFLDYLILDEADMMFSYGYEQDLKTITTSLPKIYQALLVSATI 191
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
SED+ L+ LIL PVILKLEE + +L + I + +K ++Y L KLNLVQGKT
Sbjct: 192 SEDIKCLEALILNKPVILKLEESHLPEKEKLNQFVIKCESSDKYLLIYALFKLNLVQGKT 251
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
+IFVN++D+CY+LKL+LEQF I TCVLNSELP +R H V +FN+G+YD++IA+DE +
Sbjct: 252 LIFVNSIDRCYRLKLFLEQFYIRTCVLNSELPQSSRIHIVDEFNRGVYDIVIATDEAVVI 311
Query: 330 TPQINST---------NNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRT 380
+++T N + K K+ V+RGIDFQ V NV+NFDFP YIHR GRT
Sbjct: 312 NTNLSNTNQNKEKTKKNKKAMKTKKDYAVARGIDFQDVDNVLNFDFPETGDAYIHRVGRT 371
Query: 381 ARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQ 440
ARG N GTALSFV+ E +Q + V E L T++ + +KPY
Sbjct: 372 ARGNNHGTALSFVASSE----------------DQKHLMMVEEKLKTDVIAKENALKPYN 415
Query: 441 FNLDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHD 475
F ++E++G YR D S YFE+NP DL LRHD
Sbjct: 416 FKIEEIEGLRYRVNDVINSVTRIKVKDARFKEIKSEILHSNKLKMYFEENPKDLRVLRHD 475
Query: 476 KALYTVRIQSHLADVPDYIVPPALKKL 502
K L Q H+ DVP+Y+VP +L+ +
Sbjct: 476 KILKPTDQQPHMKDVPEYLVPSSLRHI 502
>gi|21064833|gb|AAM29646.1| RH74035p [Drosophila melanogaster]
Length = 388
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 207/362 (57%), Positives = 265/362 (73%), Gaps = 5/362 (1%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+A+LGW +PTLIQ AIPL+L+ KDV+VRARTGSGKT +A+P+IQKI+N K A
Sbjct: 21 LKAVAQLGWQQPTLIQSTAIPLLLEGKDVVVRARTGSGKTATYALPLIQKILNSKLNASE 80
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQV-DVSVQEPLLVERPDIVV 148
Q A+VL+P+KELC Q K I++L C + V+ DI++ D Q L E PDIVV
Sbjct: 81 QYVSAVVLAPTKELCRQSRKVIEQLVESCGKVVRVADIADSSNDTVTQRHALSESPDIVV 140
Query: 149 ATPARALAHLKAKTL-DLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
ATPA LA+ +A ++ DLK +E +++DEADLVF++GYE D K ++K LP +YQA+L SA
Sbjct: 141 ATPANLLAYAEAGSVVDLKH-VETLVVDEADLVFAYGYEKDFKRLIKHLPPIYQAVLVSA 199
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
TL++DV +K L L NPV LKLEEP + P QL+H ILA+E++K ILY LLKL L++G
Sbjct: 200 TLTDDVARMKGLCLNNPVTLKLEEPELVPQDQLSHQRILAEENDKPAILYALLKLRLIRG 259
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
K+IIFVN++D+CYK++L+LEQF I CVLNSELPA R H + QFN+G YD+IIASDE
Sbjct: 260 KSIIFVNSIDRCYKVRLFLEQFGIRACVLNSELPANIRIHTISQFNKGTYDIIIASDEHH 319
Query: 328 LETPQINSTNNRK--RKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKN 385
+E P S NRK R D ES SRGIDFQ V+NVINFDFP D+ YIHRAGRTARG
Sbjct: 320 MEKPGGKSATNRKSPRSGDMESSASRGIDFQCVNNVINFDFPRDVTSYIHRAGRTARGNK 379
Query: 386 QG 387
+
Sbjct: 380 RA 381
>gi|328771085|gb|EGF81125.1| hypothetical protein BATDEDRAFT_16201 [Batrachochytrium
dendrobatidis JAM81]
Length = 588
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 223/533 (41%), Positives = 326/533 (61%), Gaps = 72/533 (13%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLK--QTAQ 88
+A+AKLG+++PTL+Q +AIPL L+ KD+L RARTGSGKT A+ IP+IQKI+ K +
Sbjct: 9 RAVAKLGFVQPTLVQAKAIPLALEGKDILARARTGSGKTAAYCIPIIQKILTFKTNNASA 68
Query: 89 VQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISE-QVDVSVQEPLLVERPDIV 147
+AL+L P++EL Q+H++IQ+LTM +++V+ V+IS V V+ Q +L E PDI+
Sbjct: 69 PPAIRALILVPTRELAEQVHRHIQQLTMYATKEVRSVNISTGDVSVAGQRSILAETPDII 128
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
VATPA+ +AH++ L+LK ++E ++IDEADL+ S+G+++D+K +L LP++ Q+ L SA
Sbjct: 129 VATPAKIMAHIRENNLELKETVESMVIDEADLILSYGHDEDVKKLLLHLPRILQSYLMSA 188
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNL--- 264
TLS DV L+ L+LRNPVILKLEE A +S L Y I +E EK + + + KL++
Sbjct: 189 TLSTDVEELRQLVLRNPVILKLEESA-EELSMLTQYVIQCEEKEKFLLTFFIFKLHVHPF 247
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
GK I+FVNT+D+CYKLK++LE F I +C LNSELP K+R H V +FN+G+YD+IIA+D
Sbjct: 248 GSGKAIVFVNTIDRCYKLKIFLESFGIKSCALNSELPLKSRFHIVQEFNKGVYDIIIATD 307
Query: 325 EKA----------LETPQINS-------------TNNR-KRKRDKESGVSRGIDFQFVSN 360
E + LET + + TNN+ KR+ + E GVSRGIDF V
Sbjct: 308 ENSGLFDAEDRADLETEEAKANMTVDDKGKTASKTNNKSKRESNHEYGVSRGIDFVNVQA 367
Query: 361 VINFDFPLDIQCYIHRAGRTARG-KNQGTALSFV-----------SLREQDLMNDGTALS 408
VINFD P + Y HR GRTARG N+G ALSFV S ++Q + +
Sbjct: 368 VINFDLPRSSRAYQHRVGRTARGVHNKGYALSFVTNSSEHTVVHSSRKKQRAAAEQQSSK 427
Query: 409 FVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWR---------- 458
+ + +L+ + + E I P+ F++ +V+GF YR D
Sbjct: 428 IKQMTDAELLPRIEKRQAAMGRE----ILPFAFDMTQVEGFRYRVDDVLGLITKNAIKEA 483
Query: 459 ---------------SNYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVP 496
+FE+NP D + LRHD+ ++VR ++HL VP+Y++P
Sbjct: 484 RLKEIKAEILNSEKLKTHFENNPQDFQALRHDRTTHSVRAENHLRHVPNYLLP 536
>gi|441650301|ref|XP_004091008.1| PREDICTED: probable ATP-dependent RNA helicase DDX56 isoform 2
[Nomascus leucogenys]
Length = 507
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 219/503 (43%), Positives = 305/503 (60%), Gaps = 83/503 (16%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+ LGW PTLIQE+AIPL L+ KD+L RARTGSGKT A+AIPM+Q +++ K T V
Sbjct: 19 LQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQLLLHRKATGPV 78
Query: 90 --QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
Q + LVL P+KEL Q IQ+L C+RDV+ ++S D + Q +L+E+PD+V
Sbjct: 79 VEQAVRGLVLVPTKELARQAQSMIQQLATYCARDVRVANVSAAEDSASQRAVLMEKPDVV 138
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
V TP+R L+HL+ +L L+ SLE++++DEADL+FSFG+E+++K++L LP++YQA L SA
Sbjct: 139 VGTPSRILSHLQQDSLKLRDSLELLVVDEADLLFSFGFEEELKSLLCHLPRIYQAFLMSA 198
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQ-EDEKATILYTLLKLNLVQ 266
T +EDV +LK L+L NPV LKL+E + QL + ++ + E++K +LY LLKL+L++
Sbjct: 199 TFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLLLYALLKLSLIR 258
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
GK+++FVNT+D+ Y+L+L+LEQF I +CVLN ELP
Sbjct: 259 GKSLLFVNTLDRSYRLRLFLEQFSIPSCVLNGELPL------------------------ 294
Query: 327 ALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQ 386
R R D E+GV+RGIDF VS V+NFD P + YIHRAGRTAR N
Sbjct: 295 ------------RSRASDPEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTARANNP 342
Query: 387 GTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEV 446
G L+FV EQ + + ++L++ N I+ PYQF ++E+
Sbjct: 343 GIVLTFVLPTEQSHLG----------KIEELLSGENR---------SPILLPYQFRMEEI 383
Query: 447 KGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKALYTV 481
+GF YR +DA RS YFEDNP DL+ LRHD L+
Sbjct: 384 EGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQLLRHDLPLHPA 443
Query: 482 RIQSHLADVPDYIVPPALKKLAR 504
++ HL VPDY+VPPAL+ L R
Sbjct: 444 VVKPHLGHVPDYLVPPALRGLVR 466
>gi|402863584|ref|XP_003896087.1| PREDICTED: probable ATP-dependent RNA helicase DDX56 isoform 2
[Papio anubis]
Length = 506
Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust.
Identities = 218/503 (43%), Positives = 305/503 (60%), Gaps = 83/503 (16%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+ +GW PTLIQE+AIPL L+ KD+L RARTGSGKT A+AIPM+Q +++ K T V
Sbjct: 19 LQAVTDMGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQLLLHRKATGPV 78
Query: 90 --QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
Q + LVL P+KEL Q IQ+L C+RDV+ ++S D + Q +L+E+PD+V
Sbjct: 79 VEQAVRGLVLVPTKELARQAQSMIQQLATYCARDVRVANVSAAEDSASQRAMLMEKPDVV 138
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
V TP+R L+HL+ +L L+ SLE++++DEADL+FSFG+E+++K++L LP++YQA L SA
Sbjct: 139 VGTPSRILSHLQQDSLKLRDSLELLVVDEADLLFSFGFEEELKSLLCHLPRIYQAFLMSA 198
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQ-EDEKATILYTLLKLNLVQ 266
T +EDV +LK L+L NPV LKL+E + QL + ++ + E++K +LY LLKL+L++
Sbjct: 199 TFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLLLYALLKLSLIR 258
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
GK+++FVNT+++ Y+L+L+LEQF I TCVLN ELP
Sbjct: 259 GKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGELPL------------------------ 294
Query: 327 ALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQ 386
R R D E+GV+RGIDF VS V+NFD P + YIHRAGRTAR N
Sbjct: 295 ------------RSRASDPEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTARANNP 342
Query: 387 GTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEV 446
G L+FV EQ + + ++L++ N I+ PYQF ++E+
Sbjct: 343 GIVLTFVLPPEQSHLG----------KIEELLSGENR---------GPILLPYQFRMEEI 383
Query: 447 KGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKALYTV 481
+GF YR +DA RS YFEDNP DL+ LRHD L+
Sbjct: 384 EGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQLLRHDLPLHPA 443
Query: 482 RIQSHLADVPDYIVPPALKKLAR 504
++ HL VPDY+VPPAL+ L R
Sbjct: 444 VVKPHLGHVPDYLVPPALRGLVR 466
>gi|380692328|ref|NP_001244118.1| probable ATP-dependent RNA helicase DDX56 isoform 2 [Homo sapiens]
gi|426356103|ref|XP_004045431.1| PREDICTED: probable ATP-dependent RNA helicase DDX56 isoform 2
[Gorilla gorilla gorilla]
Length = 507
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 221/503 (43%), Positives = 304/503 (60%), Gaps = 83/503 (16%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+ LGW PTLIQE+AIPL L+ KD+L RARTGSGKT A+AIPM+Q +++ K T V
Sbjct: 19 LQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQLLLHRKATGPV 78
Query: 90 --QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
Q + LVL P+KEL Q IQ+L C+RDV+ ++S D Q +L+E+PD+V
Sbjct: 79 VEQAVRGLVLVPTKELARQAQSMIQQLATYCARDVRVANVSAAEDSVSQRAVLMEKPDVV 138
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
V TP+R L+HL+ +L L+ SLE++++DEADL+FSFG+E+++K++L LP++YQA L SA
Sbjct: 139 VGTPSRILSHLQQDSLKLRDSLELLVVDEADLLFSFGFEEELKSLLCHLPRIYQAFLMSA 198
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQ-EDEKATILYTLLKLNLVQ 266
T +EDV +LK LIL NPV LKL+E + QL + ++ + E++K +LY LLKL+L++
Sbjct: 199 TFNEDVQALKELILHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLLLYALLKLSLIR 258
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
GK+++FVNT+++ Y+L+L+LEQF I TCVLN ELP
Sbjct: 259 GKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGELPL------------------------ 294
Query: 327 ALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQ 386
R R D E+GV+RGIDF VS V+NFD P + YIHRAGRTAR N
Sbjct: 295 ------------RSRASDPEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTARANNP 342
Query: 387 GTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEV 446
G L+FV EQ F + ++L++ N I+ PYQF ++E+
Sbjct: 343 GIVLTFVLPTEQ----------FHLGKIEELLSGENR---------GPILLPYQFRMEEI 383
Query: 447 KGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKALYTV 481
+GF YR +DA RS YFEDNP DL+ LRHD L+
Sbjct: 384 EGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQLLRHDLPLHPA 443
Query: 482 RIQSHLADVPDYIVPPALKKLAR 504
++ HL VPDY+VPPAL+ L R
Sbjct: 444 VVKPHLGHVPDYLVPPALRGLVR 466
>gi|410058883|ref|XP_003951047.1| PREDICTED: probable ATP-dependent RNA helicase DDX56 [Pan
troglodytes]
Length = 507
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 221/503 (43%), Positives = 304/503 (60%), Gaps = 83/503 (16%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+ LGW PTLIQE+AIPL L+ KD+L RARTGSGKT A+AIPM+Q +++ K T V
Sbjct: 19 LQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQLLLHRKATGPV 78
Query: 90 --QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
Q + LVL P+KEL Q IQ+L C+RDV+ ++S D Q +L+E+PD+V
Sbjct: 79 VEQAVRGLVLVPTKELARQAQSMIQQLATYCARDVRVANVSAAEDSVSQRAVLMEKPDVV 138
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
V TP+R L+HL+ +L L+ SLE++++DEADL+FSFG+E+++K++L LP++YQA L SA
Sbjct: 139 VGTPSRILSHLQQDSLKLRDSLELLVVDEADLLFSFGFEEELKSLLCHLPRIYQAFLMSA 198
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQ-EDEKATILYTLLKLNLVQ 266
T +EDV +LK LIL NPV LKL+E + QL + ++ + E++K +LY LLKL+L++
Sbjct: 199 TFNEDVQALKELILHNPVTLKLQESQLPGPDQLQQFQVICETEEDKFLLLYALLKLSLIR 258
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
GK+++FVNT+++ Y+L+L+LEQF I TCVLN ELP
Sbjct: 259 GKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGELPL------------------------ 294
Query: 327 ALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQ 386
R R D E+GV+RGIDF VS V+NFD P + YIHRAGRTAR N
Sbjct: 295 ------------RSRASDLEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTARANNP 342
Query: 387 GTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEV 446
G L+FV EQ F + ++L++ N I+ PYQF ++E+
Sbjct: 343 GIVLTFVLPTEQ----------FHLGKIEELLSGENR---------GPILLPYQFRMEEI 383
Query: 447 KGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKALYTV 481
+GF YR +DA RS YFEDNP DL+ LRHD L+
Sbjct: 384 EGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQLLRHDLPLHPA 443
Query: 482 RIQSHLADVPDYIVPPALKKLAR 504
++ HL VPDY+VPPAL+ L R
Sbjct: 444 VVKPHLGHVPDYLVPPALRGLVR 466
>gi|403278479|ref|XP_003930832.1| PREDICTED: probable ATP-dependent RNA helicase DDX56 isoform 2
[Saimiri boliviensis boliviensis]
Length = 507
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 219/503 (43%), Positives = 306/503 (60%), Gaps = 83/503 (16%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+ LGW PTLIQE+AIPL L+ KD+L RARTGSGKT A+AIPM+Q +++ K T V
Sbjct: 19 LQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQLLLHRKATGPV 78
Query: 90 --QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
Q + LVL P+KEL Q IQ+L C+RDV+ ++S D + Q +L+E+PD++
Sbjct: 79 VEQAVRGLVLVPTKELARQAQCMIQQLATYCARDVRVANVSAVEDSASQRAVLMEKPDVI 138
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
V TP+R L+HL+ +L L+ SLE++++DEADL+FSFG+E+++K++L LP++YQA L SA
Sbjct: 139 VGTPSRILSHLQQDSLKLRDSLELLVMDEADLLFSFGFEEELKSLLCHLPRIYQAFLMSA 198
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQ-EDEKATILYTLLKLNLVQ 266
T +EDV +LK L+L NPV LKL+E + QL + ++ + E++K +LYTLLKL+L++
Sbjct: 199 TFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLLLYTLLKLSLIR 258
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
GK+++FVNT+++ Y+L+L+LEQF I TCVLN ELP
Sbjct: 259 GKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGELPL------------------------ 294
Query: 327 ALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQ 386
R R D E+GV+RGIDF VS V+NFD P + YIHRAGRTAR N
Sbjct: 295 ------------RSRASDPEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTARANNP 342
Query: 387 GTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEV 446
G L+FV EQ + + ++L++ N I+ PYQF ++E+
Sbjct: 343 GVVLTFVLPTEQSHLG----------KIEELLSGENR---------GPILLPYQFQMEEI 383
Query: 447 KGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKALYTV 481
+GF YR +DA RS YFEDNP DL+ LRHD L+
Sbjct: 384 EGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQLLRHDLPLHPA 443
Query: 482 RIQSHLADVPDYIVPPALKKLAR 504
++ HL VPDY+VPPAL+ L R
Sbjct: 444 VVKPHLGHVPDYLVPPALRGLVR 466
>gi|257215840|emb|CAX83072.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 [Schistosoma japonicum]
Length = 529
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 220/509 (43%), Positives = 313/509 (61%), Gaps = 46/509 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AIA L W++PT IQ+ IPL+ ++V A+TGSGKT AFAIP++ ++ KQ A
Sbjct: 17 LKAIADLNWIKPTDIQQAVIPLVFAKHCIVVHAKTGSGKTAAFAIPVLNDLLQEKQFASC 76
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
Q T ++L+P+KELC+Q+ NI+ L ++ + VDIS D+ +PL++E PDIV+
Sbjct: 77 QATSVVILTPTKELCSQVASNIKYLCKYAAKSISSVDISASYDIDQIKPLILENPDIVIG 136
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP+R + L++ L LK L +++DEADL+F+FG+E +++ + +LP+ QAIL SATL
Sbjct: 137 TPSRLMQVLRSGFLSLK-HLRCIVVDEADLIFTFGHEAEIRDLRTYLPQKIQAILMSATL 195
Query: 210 SEDVLSLKHLILRNPVILKLEEP--AIAPV-SQLAHYHILAQEDEKATILYTLLKLNLVQ 266
+ ++ ++++ +++E P A P +QL Y I A++++K IL L KL +V+
Sbjct: 196 DDTSKIIRRYLVKHANWVRVELPDEAFLPGDNQLTQYIISAEDEDKYAILIALFKLRIVR 255
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
GKT+IF N+VD+CYKL+L+L++F I +LNSELP K+R H + QFN+GLYD ++A+DE
Sbjct: 256 GKTLIFTNSVDRCYKLRLFLDEFGIRAALLNSELPVKSRSHIIDQFNRGLYDYLLATDES 315
Query: 327 ALE--TPQ---INSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTA 381
+ TP N ++ R R RD E GVSRGIDFQ VSNVINFDFP Y+HR GRTA
Sbjct: 316 QADHNTPSSEVSNKSSKRIRHRDTEYGVSRGIDFQMVSNVINFDFPPTPILYVHRVGRTA 375
Query: 382 RGKNQGTALSFVSLREQDLMNDGTAL---SFVSLREQDLMNDVNEYLMTNLHEDDFIIKP 438
R GTALSFVS E+ + D AL S ++ + + N+ N + +P
Sbjct: 376 RADQMGTALSFVSKAEESRLVDVEALLNPSGAAVVKPGVANEKNVA--------SSVFRP 427
Query: 439 YQFNLDEVKGFEYRAKDAWR-------------------------SNYFEDNPTDLETLR 473
YQF L EV GF+YRA D R YF+D+ DLE LR
Sbjct: 428 YQFRLSEVDGFKYRAADVMRHITRKVVREARLKEIKIELLNSERLKGYFQDHIPDLEALR 487
Query: 474 HDKALYTVRIQSHLADVPDYIVPPALKKL 502
HDK L + Q HL DVPDY+VP +LK L
Sbjct: 488 HDKPLKHI-AQPHLKDVPDYLVPQSLKAL 515
>gi|409040682|gb|EKM50169.1| hypothetical protein PHACADRAFT_166739 [Phanerochaete carnosa
HHB-10118-sp]
Length = 585
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 215/518 (41%), Positives = 313/518 (60%), Gaps = 62/518 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIIN--LKQTA 87
L+A+A LG+ PTL+Q +AIPL L+N+D+L RARTGSGKT A+ IP++QKI+N ++
Sbjct: 25 LRALADLGFARPTLVQSKAIPLALENRDILARARTGSGKTAAYCIPVVQKILNNTAASSS 84
Query: 88 QVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
Q T+AL+L P++EL Q+ +++ L C ++V ++S +Q LL ++PDIV
Sbjct: 85 DSQSTRALILVPTRELSEQISAHLRGLVTYCDKEVTIANVSSGTTHHLQRTLLSDKPDIV 144
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLK--FLPKLYQAILA 205
VATP++ALA L++K + ++IDEADL+ S+G+++D++ + +LPK+YQ+ L
Sbjct: 145 VATPSKALALLQSK------ANTTLVIDEADLILSYGHDEDVRQIFSSGYLPKVYQSFLM 198
Query: 206 SATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLV 265
SAT+++DV LK L LR+PVILKLEE + L Y + E +K ++Y +LKL L+
Sbjct: 199 SATMTDDVEQLKGLALRSPVILKLEEDE-DEAANLTQYSVRCSEVDKFLLIYVILKLRLI 257
Query: 266 QGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE 325
+GK IIFVN VD+CY+LKL+LEQF I +CVLNSELP +R H V +FN+G+Y+ IIASDE
Sbjct: 258 KGKCIIFVNDVDRCYRLKLFLEQFSIKSCVLNSELPLNSRYHVVQEFNKGVYEYIIASDE 317
Query: 326 K--------------ALETPQINSTNNRKRKR--------DKESGVSRGIDFQFVSNVIN 363
A ET N ++ RKR DKE GV+RG+DF VS V+N
Sbjct: 318 SIKKGEQDVESEEEDAAETKDDNCDQSKSRKRKHRHKGEGDKEYGVTRGVDFVDVSCVVN 377
Query: 364 FDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNE 423
FD P + Y HR GRTAR G +LSFV + E++ + S ++ + ++
Sbjct: 378 FDLPPSSRSYTHRVGRTARAGRSGMSLSFV-VPEKEWGKNKVVGCVESTKKDE---KISA 433
Query: 424 YLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS------------------------ 459
+ IK Y+F++ +V+ F YR +DA R+
Sbjct: 434 RIEAEQAARGSKIKEYKFDMKQVEAFRYRMEDALRAVTRSAVREARIKELKTEILNSDKL 493
Query: 460 -NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVP 496
+FEDNP DLE LRHDK L+ R+QSH+ VP Y++P
Sbjct: 494 KAHFEDNPLDLEYLRHDKPLHPARVQSHMKHVPKYMLP 531
>gi|332022664|gb|EGI62950.1| Putative ATP-dependent RNA helicase DDX56 [Acromyrmex echinatior]
Length = 323
Score = 390 bits (1001), Expect = e-105, Method: Compositional matrix adjust.
Identities = 191/295 (64%), Positives = 239/295 (81%)
Query: 39 LEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLS 98
+EPTLIQ++ IPL+L+ KD+L++ARTGSGKT AF +P+IQKI+ K+ + QE K L+++
Sbjct: 1 MEPTLIQDKVIPLLLEGKDLLIKARTGSGKTAAFVVPLIQKILINKRIQEKQEIKGLIIA 60
Query: 99 PSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHL 158
PSKELC Q+H I LT KC R+V+ +D+S Q D++ Q+ LL + PDIVV TP R L HL
Sbjct: 61 PSKELCRQIHDVIVSLTTKCCREVRTIDLSLQTDLNAQKLLLRDMPDIVVVTPGRLLQHL 120
Query: 159 KAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKH 218
KAK L LK SL+ +IIDEADL+FSFGYE D+KAVL +LP +YQA+LASATLSEDV SLK
Sbjct: 121 KAKNLMLKHSLDTLIIDEADLLFSFGYEKDLKAVLAYLPTVYQAVLASATLSEDVQSLKK 180
Query: 219 LILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDK 278
LIL NP ILKLEEP +AP +QLAHY + A+E++KA ILY LLKL+L++GK+IIFV+TVD+
Sbjct: 181 LILHNPAILKLEEPPLAPPTQLAHYTLAAEENDKAAILYALLKLHLIRGKSIIFVHTVDR 240
Query: 279 CYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQI 333
CYKLKL+LEQF I TCVLNSELPA +RC AV QFN G YD+IIASDEK LE +I
Sbjct: 241 CYKLKLFLEQFGIPTCVLNSELPATSRCRAVSQFNNGTYDIIIASDEKILEEVRI 295
>gi|302685648|ref|XP_003032504.1| hypothetical protein SCHCODRAFT_67090 [Schizophyllum commune H4-8]
gi|300106198|gb|EFI97601.1| hypothetical protein SCHCODRAFT_67090 [Schizophyllum commune H4-8]
Length = 610
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 216/554 (38%), Positives = 320/554 (57%), Gaps = 87/554 (15%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINL------ 83
L+A+A LG+ PTL+Q +AIPL L+++D+L RARTGSGKT A+ +P++QKI+NL
Sbjct: 25 LRALADLGFARPTLVQAKAIPLALESRDILARARTGSGKTAAYCVPLVQKILNLNAKSVG 84
Query: 84 -KQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVE 142
+ A+ T+AL+L P++EL Q++ ++++L C +V ++++ +Q L+ +
Sbjct: 85 TSRRAEAPATRALILVPTRELAEQVNGHLRKLLAYCEGEVSVINVASGNTAGLQRTLISD 144
Query: 143 RPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLK--FLPKLY 200
IV+ATP+RALA L++K L L S+L+ ++IDEADL+ S+G+++D++ + +LPK+Y
Sbjct: 145 THHIVIATPSRALAFLQSKALSL-SALDSLVIDEADLILSYGHDEDVRGIFNGGYLPKVY 203
Query: 201 QAILASATLSEDVLSLKHLILRNPVILKLEE-PAIAPVSQLAHYHILAQEDEKATILYTL 259
Q+ L SAT++EDV LK L LRNP ILKLEE PA A ++Q Y + + +K + Y +
Sbjct: 204 QSFLMSATMTEDVEMLKGLALRNPAILKLEEDPAAANLTQ---YAVRCTQRDKFLLTYVI 260
Query: 260 LKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDV 319
LKL L+ GK IIFVN VD+CY+LKL+LEQF I +CVLNSELP +R H V +FN+G+YD
Sbjct: 261 LKLKLIHGKCIIFVNDVDRCYRLKLFLEQFSIKSCVLNSELPLNSRYHTVQEFNKGVYDY 320
Query: 320 IIASDEKAL--------------------------------------ETPQINSTNNRKR 341
IIA+DE L + R R
Sbjct: 321 IIATDESGLGERDEEDIERETEAEAAGEEEAESSEDEAAKPDPPSASSAASPPTKAKRPR 380
Query: 342 KRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLM 401
D+E GV+RG+DF V+ V+NFD P + Y HR GRTAR G ALSFVS DL
Sbjct: 381 ASDREYGVTRGVDFLDVAAVLNFDLPGSARAYTHRVGRTARAGRAGMALSFVS--RPDLS 438
Query: 402 NDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS-- 459
+ + R++++ + + +K Y+F++ +V+ F YR +DA RS
Sbjct: 439 DKDPVNRTLGRRDEEVFARIER------EQGAGAVKEYRFDMRQVEAFRYRMEDALRSVT 492
Query: 460 -----------------------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVP 496
+FEDNP DLE L+HD+AL+ R+Q H+ VP Y++P
Sbjct: 493 RVAVREARVRELKAEVLGSEKLKAHFEDNPLDLEFLKHDRALHPQRVQPHMKFVPKYLIP 552
Query: 497 PALKKLARIEDDGD 510
+ A I+ GD
Sbjct: 553 GGVA--AGIKGPGD 564
>gi|426227859|ref|XP_004008032.1| PREDICTED: probable ATP-dependent RNA helicase DDX56 isoform 2
[Ovis aries]
Length = 512
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 214/507 (42%), Positives = 301/507 (59%), Gaps = 89/507 (17%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+ LGW PTLIQE+AIPL L+ KD+L RARTGSGKT A+AIPM+Q +++ K T V
Sbjct: 19 LQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQLLLHRKATGPV 78
Query: 90 --QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
Q +ALVL P+KEL Q IQ+L C+RD++ ++S D++ Q +L+E+PD+V
Sbjct: 79 VEQAVRALVLVPTKELARQAQSMIQQLAAYCARDIRVANVSAAEDLASQRAVLMEKPDVV 138
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
V TP+R L HL+ L L+ S+E++++DEADL+FSFG+E+++K++L LP++YQA L SA
Sbjct: 139 VGTPSRILNHLQQDNLKLRDSMELLVVDEADLLFSFGFEEELKSLLCHLPRIYQAFLMSA 198
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQ-EDEKATILYTLLKLNLVQ 266
T +EDV +LK L+L NPV LKL+E + QL + ++ + E++K +LY LLKL+L++
Sbjct: 199 TFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLLLYALLKLSLIR 258
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
GK+++FVNT+++ Y+L+L+LEQF I CVLN ELP
Sbjct: 259 GKSLLFVNTLERSYRLRLFLEQFSIPACVLNGELPL------------------------ 294
Query: 327 ALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQ 386
R R D E+GV+RGIDF V V+NFD P + YIHRAGRTAR
Sbjct: 295 ------------RSRASDPEAGVARGIDFHHVCAVLNFDLPPTPEAYIHRAGRTARAN-- 340
Query: 387 GTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEV 446
N G L+FV EQ + + E L + ++ PYQF+++E+
Sbjct: 341 ---------------NPGIVLTFVLPTEQSQLGKIEELLSGD--SGAPVLLPYQFHMEEI 383
Query: 447 KGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKALYTV 481
+GF YR +DA RS YFEDNP DL+ LRHD L+
Sbjct: 384 EGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQLLRHDLPLHPA 443
Query: 482 RIQSHLADVPDY------IVPPALKKL 502
++ HL +VPDY +VPPAL+ L
Sbjct: 444 VVKPHLGNVPDYLVQLLTLVPPALRGL 470
>gi|395507002|ref|XP_003757817.1| PREDICTED: probable ATP-dependent RNA helicase DDX56 [Sarcophilus
harrisii]
Length = 492
Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust.
Identities = 206/454 (45%), Positives = 288/454 (63%), Gaps = 51/454 (11%)
Query: 83 LKQTAQV--QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLL 140
L QT V Q + LVL P+KEL Q I++LT C+RDV+ VD+S D + Q PLL
Sbjct: 12 LLQTGPVIEQAVRGLVLVPTKELARQAQTMIRQLTAYCARDVRVVDVSASEDFAFQRPLL 71
Query: 141 VERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLY 200
+E+PD+VV TP+R L+HL L+L+ SLE++++DEADL+FSFG+E+++K +L LP++Y
Sbjct: 72 MEKPDVVVGTPSRVLSHLLQGNLNLRDSLELLVMDEADLLFSFGFEEELKTLLCHLPRIY 131
Query: 201 QAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQ-EDEKATILYTL 259
QA L SAT +EDV +LK L+L NPV LKL+E + QL + ++ + E++K +LY L
Sbjct: 132 QAFLMSATFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLLLYAL 191
Query: 260 LKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDV 319
LKL+L++GK+++FVNT+++ Y+L+L+LEQF I CVLN ELP ++RCH + QFNQG YD
Sbjct: 192 LKLSLLRGKSLLFVNTLERSYRLRLFLEQFSIPACVLNGELPLRSRCHIISQFNQGFYDC 251
Query: 320 IIASDEKALETP----QINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIH 375
+IA+DE+ L P + + +R D ESGV+RGIDF V+ V+NFD P + YIH
Sbjct: 252 VIATDEEVLGAPVKGKRQGQGSKGERSADTESGVARGIDFHNVTAVLNFDLPPSPEAYIH 311
Query: 376 RAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFI 435
RAGRTAR N GTAL+FV E R Q + ++ E L E F+
Sbjct: 312 RAGRTARANNPGTALTFVLPTE---------------RPQ--LKEIEEALGGESAESMFL 354
Query: 436 IKPYQFNLDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLE 470
PYQF ++E++GF YR +DA RS YFEDNP DL+
Sbjct: 355 --PYQFRMEEIEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQ 412
Query: 471 TLRHDKALYTVRIQSHLADVPDYIVPPALKKLAR 504
LRHD+ L+ ++ HL VPDY+VPP L+ +AR
Sbjct: 413 LLRHDRPLHPAVVKPHLGHVPDYLVPPTLRGIAR 446
>gi|320167827|gb|EFW44726.1| ATP-dependent RNA helicase dbp9 [Capsaspora owczarzaki ATCC 30864]
Length = 631
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 220/559 (39%), Positives = 310/559 (55%), Gaps = 107/559 (19%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ 90
+AIAKLGW PTLIQ +AIPL LQ KD+L RARTGSGKT A+AIP+IQ+I+ A +
Sbjct: 18 RAIAKLGWSRPTLIQAKAIPLALQGKDILARARTGSGKTAAYAIPVIQRILADTAAAAIA 77
Query: 91 ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVD---VSVQEPLLVERPDIV 147
+A+VL P++EL Q +N ++LT CSR+V V+++ + Q L+ PDIV
Sbjct: 78 VEQAIVLVPTRELSLQAKQNFKDLTQYCSREVTAVELAGDTSATAIEAQRHELLANPDIV 137
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
+ TP+R +AH++A LD+++SL+++++DEADLVF FGYE+D+K +L+ LP++ QA L SA
Sbjct: 138 IGTPSRIVAHIEAGHLDVRTSLQMIVVDEADLVFGFGYENDIKTLLRHLPRIVQAFLMSA 197
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
TLS DV SLK L+L +PVILKL+E + +L Y I ++K +++T LKL L++G
Sbjct: 198 TLSPDVDSLKRLMLHSPVILKLQESQLPDADRLMQYVIKCDMNDKFLLVFTFLKLRLLRG 257
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK- 326
KTIIFVN VD+CY++KL+LEQF I CVLNSELP +R H V +FN+G+YD IIA+DE
Sbjct: 258 KTIIFVNDVDRCYRVKLFLEQFGIRACVLNSELPQNSRYHIVQEFNRGVYDYIIATDEHD 317
Query: 327 ---------------------ALETPQIN---------------------------STNN 338
ET + ++
Sbjct: 318 SNSQVDDSDSDSDNDEEESNETAETDTVEAVFENDDDAEQATTTATASAEPVATAAASKG 377
Query: 339 RKRKRDK-ESGVSRGIDFQF-------VSNVIN---FDFPLDIQCYIHRAGRTARGKNQG 387
+ ++R K ++G G D ++ NV N FDFP + Y+HR GRTARG G
Sbjct: 378 KAQQRPKRKAGRKAGADSEYGVARGIDFQNVSNVINFDFPETARSYVHRVGRTARGDKSG 437
Query: 388 TALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVK 447
+LS ++ D L+ V + + H + +QF + E+
Sbjct: 438 QSLSLIA------PEDEGRLAIVQRK-------------LSKHNSGHKFQQFQFAMHEIA 478
Query: 448 GFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKALYTVR 482
F YRA DA R+ YFEDNP DLE LRHDK + R
Sbjct: 479 AFRYRAADALRAVTAASVKEARLKEIKNEIFNSQKLKAYFEDNPKDLEALRHDKPSHPAR 538
Query: 483 IQSHLADVPDYIVPPALKK 501
IQ+HL +P Y++P +L K
Sbjct: 539 IQAHLKHIPSYLMPESLMK 557
>gi|160380696|sp|A6SNX1.2|DBP9_BOTFB RecName: Full=ATP-dependent RNA helicase dbp9
Length = 607
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 210/529 (39%), Positives = 305/529 (57%), Gaps = 64/529 (12%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQ IAK + PTL+Q +AIPL L+ +D+L RA+TGSGKT A+ +P++ I+ K+ +
Sbjct: 36 LQGIAKQNFQSPTLVQSKAIPLTLEGRDILARAKTGSGKTAAYLLPILHSILKRKELSST 95
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
Q T AL+L P++EL +Q++K ++ T C++DV+ V+++++V +VQ LL + PDIV+A
Sbjct: 96 QCTTALILVPTRELADQVYKTVESFTAFCAKDVRAVNLTQRVSDAVQRSLLADSPDIVIA 155
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TPARA + L L ++L ++IDEADLV S+GY++D++ V K +PK Q +L SATL
Sbjct: 156 TPARASLNANTSALSL-ANLTHMVIDEADLVLSYGYDEDLQNVAKIMPKGVQTVLMSATL 214
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+ +V +LK L RNP +LKLEE A ++ + + EDEK + Y + KL L++GK
Sbjct: 215 TSEVETLKGLFCRNPEVLKLEE-AEDEGEGVSQFVVKCAEDEKFLLTYVIFKLKLIKGKC 273
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE---- 325
IIFV +D+CY+LKL+LEQF +C+LNS+LP +R H V +FN+ +YD+IIASDE
Sbjct: 274 IIFVGDIDRCYRLKLFLEQFGTRSCILNSQLPVNSRIHVVEEFNKNVYDIIIASDEHEVL 333
Query: 326 ------KALETPQINSTNNRKRKRD----------------------KESGVSRGIDFQF 357
K+ + ++ + + + K D KE GVSRGIDF+
Sbjct: 334 GDEDEPKSGDAEEVEADDADEEKEDAKDAKKETKQPSKKKQKTGKKDKEYGVSRGIDFKN 393
Query: 358 VSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDL 417
V+ V+NFD P + Y HR GRTAR G ALSFV EQ + T++ E+ L
Sbjct: 394 VACVLNFDLPTSSKSYTHRIGRTARAGQTGMALSFVIPSEQYRKHKPTSIESAKNDEKVL 453
Query: 418 MNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS------------------ 459
V +KPY F++ +V F YR DA R+
Sbjct: 454 AKIVKHQAKKGKE-----VKPYNFDMKQVDAFRYRMGDALRAVTSIAVQEAKTREIRQEL 508
Query: 460 -------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPPALKK 501
+FE+NP DL LRHD L R+Q+HL VPDY++P KK
Sbjct: 509 MKSDKLKRHFEENPGDLYHLRHDGELRPARVQAHLKHVPDYLLPKEGKK 557
>gi|347838407|emb|CCD52979.1| similar to ATP-dependent RNA helicase dbp9 [Botryotinia fuckeliana]
Length = 607
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 210/529 (39%), Positives = 305/529 (57%), Gaps = 64/529 (12%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQ IAK + PTL+Q +AIPL L+ +D+L RA+TGSGKT A+ +P++ I+ K+ +
Sbjct: 36 LQGIAKQNFQSPTLVQSKAIPLTLEGRDILARAKTGSGKTAAYLLPILHSILKRKELSST 95
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
Q T AL+L P++EL +Q++K ++ T C++DV+ V+++++V +VQ LL + PDIV+A
Sbjct: 96 QCTTALILVPTRELADQVYKTVESFTAFCAKDVRAVNLTQRVSDAVQRSLLADSPDIVIA 155
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TPARA + L L ++L ++IDEADLV S+GY++D++ V K +PK Q +L SATL
Sbjct: 156 TPARASLNANTSALSL-TNLTHMVIDEADLVLSYGYDEDLQNVAKIMPKGVQTVLMSATL 214
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+ +V +LK L RNP +LKLEE A ++ + + EDEK + Y + KL L++GK
Sbjct: 215 TSEVETLKGLFCRNPEVLKLEE-AEDEGEGVSQFVVKCAEDEKFLLTYVIFKLKLIKGKC 273
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE---- 325
IIFV +D+CY+LKL+LEQF +C+LNS+LP +R H V +FN+ +YD+IIASDE
Sbjct: 274 IIFVGDIDRCYRLKLFLEQFGTRSCILNSQLPVNSRIHVVEEFNKNVYDIIIASDEHEVL 333
Query: 326 ------KALETPQINSTNNRKRKRD----------------------KESGVSRGIDFQF 357
K+ + ++ + + + K D KE GVSRGIDF+
Sbjct: 334 GDEDEPKSGDAEEVEADDADEEKEDAKDAKKETKQPSKKKQKTGKKDKEYGVSRGIDFKN 393
Query: 358 VSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDL 417
V+ V+NFD P + Y HR GRTAR G ALSFV EQ + T++ E+ L
Sbjct: 394 VACVLNFDLPTSSKSYTHRIGRTARAGQTGMALSFVIPSEQYRKHKPTSIESAKNDEKVL 453
Query: 418 MNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS------------------ 459
V +KPY F++ +V F YR DA R+
Sbjct: 454 AKIVKHQAKKGKE-----VKPYNFDMKQVDAFRYRMGDALRAVTSIAVQEAKTREIRQEL 508
Query: 460 -------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPPALKK 501
+FE+NP DL LRHD L R+Q+HL VPDY++P KK
Sbjct: 509 MKSDKLKRHFEENPGDLYHLRHDGELRPARVQAHLKHVPDYLLPKEGKK 557
>gi|296423379|ref|XP_002841232.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637467|emb|CAZ85423.1| unnamed protein product [Tuber melanosporum]
Length = 590
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 211/500 (42%), Positives = 301/500 (60%), Gaps = 35/500 (7%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQ IAK + PTL+Q +AIPL L+ KD+L RA+TGSGKT A+ +P++Q I+ K+T++
Sbjct: 45 LQGIAKQNFSHPTLVQAKAIPLALEGKDILARAKTGSGKTAAYLLPVLQAILKRKETSEE 104
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ T AL+L P+KEL Q+HK I+ L C + ++ +++++ + VQ+ LL E+ D+VV+
Sbjct: 105 RFTSALILVPTKELAQQVHKVIESLAAYCGKHIRSINLAQNISEKVQQSLLSEKQDVVVS 164
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP+RAL H+ + L S L ++IDEADLV S+GYE+D++ V K LPK Q L SATL
Sbjct: 165 TPSRALVHINI-SESLTSQLTHLVIDEADLVLSYGYENDLQGVSKALPKGLQTFLMSATL 223
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+ +V +LK L RNP IL+LEE A L Y + EDEK +LY + KL L++GKT
Sbjct: 224 TTEVETLKSLFCRNPAILRLEEDVDAEGEGLTQYCVKCSEDEKFLLLYVIFKLKLIKGKT 283
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
IIFV +D+ Y++KL+LEQF I +CVLNSELP +R H V +FN+ +Y++IIASDE
Sbjct: 284 IIFVGDIDRSYRVKLFLEQFGIRSCVLNSELPVNSRLHIVEEFNKNVYEIIIASDENEQA 343
Query: 330 ----TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKN 385
TP+ N K ++DKE G+SRG+DF+ ++ V+NFD P + Y HR GRTAR
Sbjct: 344 EPEPTPKSKKKKNAKNRKDKEYGISRGLDFKNLACVLNFDLPTTSKSYTHRIGRTARAHK 403
Query: 386 QGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDE 445
G +LSFV + T + E+ L + + + + IKPY F++ +
Sbjct: 404 NGISLSFVIPTHLFGKHKPTTHPICANNEKTL-----QRIRRSQAKLGREIKPYVFDMAQ 458
Query: 446 VKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKALYT 480
V F YR DA R+ +FE+NP DL LRHD
Sbjct: 459 VDAFRYRMDDALRAVTKIAVREARMRELRVELVKSERLKRHFEENPEDLLALRHDGESGR 518
Query: 481 VRIQSHLADVPDYIVPPALK 500
VR+Q+HL VP Y++P K
Sbjct: 519 VRVQAHLRHVPGYLLPKGGK 538
>gi|154292863|ref|XP_001546999.1| hypothetical protein BC1G_14464 [Botryotinia fuckeliana B05.10]
Length = 676
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 210/529 (39%), Positives = 305/529 (57%), Gaps = 64/529 (12%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQ IAK + PTL+Q +AIPL L+ +D+L RA+TGSGKT A+ +P++ I+ K+ +
Sbjct: 36 LQGIAKQNFQSPTLVQSKAIPLTLEGRDILARAKTGSGKTAAYLLPILHSILKRKELSST 95
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
Q T AL+L P++EL +Q++K ++ T C++DV+ V+++++V +VQ LL + PDIV+A
Sbjct: 96 QCTTALILVPTRELADQVYKTVESFTAFCAKDVRAVNLTQRVSDAVQRSLLADSPDIVIA 155
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TPARA + L L ++L ++IDEADLV S+GY++D++ V K +PK Q +L SATL
Sbjct: 156 TPARASLNANTSALSL-ANLTHMVIDEADLVLSYGYDEDLQNVAKIMPKGVQTVLMSATL 214
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+ +V +LK L RNP +LKLEE A ++ + + EDEK + Y + KL L++GK
Sbjct: 215 TSEVETLKGLFCRNPEVLKLEE-AEDEGEGVSQFVVKCAEDEKFLLTYVIFKLKLIKGKC 273
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE---- 325
IIFV +D+CY+LKL+LEQF +C+LNS+LP +R H V +FN+ +YD+IIASDE
Sbjct: 274 IIFVGDIDRCYRLKLFLEQFGTRSCILNSQLPVNSRIHVVEEFNKNVYDIIIASDEHEVL 333
Query: 326 ------KALETPQINSTNNRKRKRD----------------------KESGVSRGIDFQF 357
K+ + ++ + + + K D KE GVSRGIDF+
Sbjct: 334 GDEDEPKSGDAEEVEADDADEEKEDAKDAKKETKQPSKKKQKTGKKDKEYGVSRGIDFKN 393
Query: 358 VSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDL 417
V+ V+NFD P + Y HR GRTAR G ALSFV EQ + T++ E+ L
Sbjct: 394 VACVLNFDLPTSSKSYTHRIGRTARAGQTGMALSFVIPSEQYRKHKPTSIESAKNDEKVL 453
Query: 418 MNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS------------------ 459
V +KPY F++ +V F YR DA R+
Sbjct: 454 AKIVKHQAKKGKE-----VKPYNFDMKQVDAFRYRMGDALRAVTSIAVQEAKTREIRQEL 508
Query: 460 -------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPPALKK 501
+FE+NP DL LRHD L R+Q+HL VPDY++P KK
Sbjct: 509 MKSDKLKRHFEENPGDLYHLRHDGELRPARVQAHLKHVPDYLLPKEGKK 557
>gi|330798693|ref|XP_003287385.1| hypothetical protein DICPUDRAFT_32400 [Dictyostelium purpureum]
gi|325082590|gb|EGC36067.1| hypothetical protein DICPUDRAFT_32400 [Dictyostelium purpureum]
Length = 634
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 208/571 (36%), Positives = 318/571 (55%), Gaps = 89/571 (15%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+ K+G+ P+L+Q +AIPL LQ KD+L +ARTGSGKT A++IP+IQKI+ K+ +
Sbjct: 28 LRALKKMGFKNPSLVQSKAIPLSLQGKDILAKARTGSGKTAAYSIPIIQKILTAKEKTNI 87
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ KA++L P++ELC Q+ ++ +L+ S V V + + Q+ LL + PD++++
Sbjct: 88 KGVKAVILVPTRELCEQVKQHFTQLSCYSSHLVSVVQLGGDKSIDEQKGLLRDIPDVIIS 147
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + HL+ KT+ L+SSL+I++IDEADLV S+G+++D+ + FLPK+ Q L SATL
Sbjct: 148 TPTRLVQHLQNKTIQLQSSLDILVIDEADLVLSYGHQEDINIIKSFLPKVCQCFLMSATL 207
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
++ V LK L+L P ILKLEE A + L Y I E +K ++++LL+L L+QGK
Sbjct: 208 TQQVEELKKLVLHTPAILKLEEDK-AIQTNLTEYSIKCAETDKFLLIFSLLRLRLMQGKI 266
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
+ FVN + CYKLKL+ E+F I VLNSELP +R + + QFN+G++D +IA+DE
Sbjct: 267 LFFVNDTNNCYKLKLFFERFHIKCAVLNSELPINSRHNIILQFNKGIFDYLIATDESFSS 326
Query: 330 TPQI------------------------------------NSTNNRKRKRDKESGVSRGI 353
T N +N K DKE GV+RGI
Sbjct: 327 TTSTLKEEELEDKDEEEMEDSIDGEEEDIENLIKKNITKSNKSNKSDPKVDKEYGVARGI 386
Query: 354 DFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLR 413
DF+ V V+NFDFP I+ YIHR GRTARG N+G ALSFV+ ++L++
Sbjct: 387 DFKNVDIVVNFDFPRTIKNYIHRIGRTARGTNKGIALSFVTFNNENLLSK---------- 436
Query: 414 EQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS-------------- 459
+ E + +KP++F ++ ++GF YR +D R+
Sbjct: 437 -----------VQKTRGEAGYNLKPFEFKMNAIEGFRYRVEDVLRNVNVRSIKEARKSEL 485
Query: 460 -----------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPPALKKLARIEDD 508
++F +NP DL L+HD AL ++ +HL VP+Y++P K
Sbjct: 486 KQEVLNNEKLKSHFSENPQDLLALKHDTALIKKQVSNHLKYVPEYLLPQQFKSHV----- 540
Query: 509 GDEDVRAEPITDEEYNKQYEEYKKRSKENER 539
D+ + P T+ + Y K++++ R
Sbjct: 541 -DQKLEVIPSTNNPEKVRGVNYSKKTEQRRR 570
>gi|430812630|emb|CCJ29978.1| unnamed protein product [Pneumocystis jirovecii]
Length = 582
Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust.
Identities = 202/531 (38%), Positives = 306/531 (57%), Gaps = 71/531 (13%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQ--TA 87
L+AI+K+G+ +PT +Q + IPL L+ KDV +ARTGSGKT A+ IP+I+ ++ K+ T
Sbjct: 14 LRAISKIGFHKPTYVQSQVIPLALEGKDVFAQARTGSGKTAAYLIPIIESLLKTKKVVTQ 73
Query: 88 QVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
ETK+++L P++EL +Q+ KNI+ELT C + V+ V+++ + + + L+ + P+IV
Sbjct: 74 DQLETKSIILVPTRELASQVVKNIKELTFYCGKIVRVVNLAANISDNAAKILVSDYPEIV 133
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
V TP+R L HL L ++ SL+ ++IDE DL+ S+GY +D+ +++++PK Q L SA
Sbjct: 134 VGTPSRILVHLNGSNLHVQESLQHLVIDEFDLILSYGYLEDLNHIIRYIPKSAQMFLMSA 193
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
TL+EDV LK +I ++P+ILKL+E + L Y + EDEK + +LKL L++G
Sbjct: 194 TLTEDVDELKKMICKDPIILKLDET--NKNANLVQYSVKCSEDEKFLFAFVILKLRLIKG 251
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
K IIFVN++D+CY+LKL+LEQF I C+LNSELP +R H + +FN+ +Y++I+A+DE
Sbjct: 252 KIIIFVNSIDRCYRLKLFLEQFGIRCCILNSELPVNSRLHIIEEFNKNIYNIILATDEND 311
Query: 328 LETPQINSTNNRKR-------------------------------------KRDKESGVS 350
L ++++ + R RD E GVS
Sbjct: 312 LLKKPDSASSIKGRVIFFLCIYLISNSEENINCDTTQAVLKNNSSKKQKKIHRDNEYGVS 371
Query: 351 RGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFV 410
RGIDF+ V+ V+NFD P ++ YIHR+GRTAR G +SF+ + T L
Sbjct: 372 RGIDFKNVTCVLNFDLPTTVKSYIHRSGRTARADKDGMVMSFIVPENLWGKHKSTILESA 431
Query: 411 SLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS----------- 459
E + + + + IKPY FN++ V F YR +DA R+
Sbjct: 432 KYDES-----IFQAIEKDQEAKGATIKPYSFNMEHVNAFRYRMEDALRAITRTVIREARE 486
Query: 460 --------------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVP 496
YF++NP DLE LRHDK L+ RIQ HL +PDY++P
Sbjct: 487 KELRMEILSSKKLKEYFDENPNDLEQLRHDKELHPARIQPHLKHIPDYLLP 537
>gi|393221845|gb|EJD07329.1| ATP-dependent RNA helicase dbp9 [Fomitiporia mediterranea MF3/22]
Length = 633
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 218/554 (39%), Positives = 313/554 (56%), Gaps = 93/554 (16%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+A +G+ PTL+Q +AIPL L+ +D+L RARTGSGKT ++ +P+ QKI+ K +
Sbjct: 25 LRALADMGFARPTLVQAQAIPLALEGRDILARARTGSGKTASYCVPLAQKILRKKDAFSI 84
Query: 90 -----QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERP 144
Q +ALVL P+KEL +Q+ K++++L C +++ V++ +Q L E+P
Sbjct: 85 EDPARQAVRALVLVPTKELADQVAKHLRQLLAYCEKEIVVVNLVSGTSTHLQRVLTSEKP 144
Query: 145 DIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLK--FLPKLYQA 202
DIV+ TP+RAL+ L+ K L L S LE ++IDEADLV S+G+++D++ V+ +LPK+YQ+
Sbjct: 145 DIVIGTPSRALSALQVKALSL-SDLESLVIDEADLVLSYGHDEDIRTVINGGYLPKVYQS 203
Query: 203 ILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKL 262
L SAT+++DV LK L+LRNP IL+LEE ++L+ Y + E +K + Y +LKL
Sbjct: 204 FLMSATMTKDVELLKGLVLRNPAILRLEEDE-GDAARLSQYVVKCNEVDKFLLTYVILKL 262
Query: 263 NLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIA 322
LV+GKTIIFVN VD+CY++KL+LEQF I +CVLNSELP +R H V +FN+G+YD IIA
Sbjct: 263 KLVKGKTIIFVNDVDRCYRVKLFLEQFSIKSCVLNSELPLNSRVHIVQEFNKGVYDYIIA 322
Query: 323 SDEKAL--------ET-------------------------PQINSTNNRKRKR------ 343
+DE + ET P +ST KRKR
Sbjct: 323 TDEGSGSIEPDSDDETDEEVQVDGEQLTSTQRDVEPIEPGDPGPSSTKTMKRKRSPSPRP 382
Query: 344 ----------------DKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQG 387
DKE GV RG+DF V+ V+NFD P + Y HR GRTAR G
Sbjct: 383 TPEGTTTKKNKSRTQNDKEYGVVRGVDFIDVACVLNFDLPTSARAYTHRVGRTARAGRTG 442
Query: 388 TALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVK 447
ALSFV + N + R++ + + T + I Y+F++ +V+
Sbjct: 443 MALSFVVPAAEWGKNKVVGCLPSARRDEVRFSRIERQQATRGSK----INEYKFDMKQVE 498
Query: 448 GFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKALYTVR 482
F YR +DA RS +FE+NP DLE LRHDK L+ R
Sbjct: 499 AFRYRMQDALRSVTRTAIREARVKELKSEILNSEKLKAHFEENPLDLEYLRHDKPLHPTR 558
Query: 483 IQSHLADVPDYIVP 496
+Q H+ VP Y++P
Sbjct: 559 VQPHMKHVPKYLMP 572
>gi|390600267|gb|EIN09662.1| ATP-dependent RNA helicase dbp9 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 634
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 215/560 (38%), Positives = 316/560 (56%), Gaps = 90/560 (16%)
Query: 21 FTFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKI 80
F+ L L+A+A LG+ PTL+Q +AIPL L+ +D+L RARTGSGKT A+ IP+IQK+
Sbjct: 16 FSHILDARLLRALADLGFARPTLVQAKAIPLALEGRDILARARTGSGKTAAYCIPVIQKV 75
Query: 81 INL--------KQTAQV-QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQV 131
++ +Q+A + T AL+L P++EL Q+ +++ L C +V +++
Sbjct: 76 LSANGVAIDPRQQSAPTDKHTHALILVPTRELAEQVSSHLRALLAYCENEVIVSNVASGA 135
Query: 132 DVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKA 191
+Q+ LL +RP IVV+TP+R L LK+KT+D+ S +E ++IDEADL+FS+G+++D++
Sbjct: 136 TSHLQKTLLEDRPQIVVSTPSRVLTLLKSKTVDI-SRIECLVIDEADLIFSYGHDEDIRQ 194
Query: 192 VLK--FLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQE 249
+L +LPK++Q+ L SAT++EDV +LK L LRNP IL+LEE + L Y + E
Sbjct: 195 ILGGGYLPKIFQSFLMSATMTEDVETLKGLALRNPAILRLEE-GEDQAANLTQYSVRCSE 253
Query: 250 DEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAV 309
+K + Y +LKL L++GK IIFVNTVD+CY+LKL+LEQF I +CVLNSELP +R H V
Sbjct: 254 VDKFLLTYVILKLKLIKGKCIIFVNTVDRCYRLKLFLEQFSIKSCVLNSELPLNSRYHVV 313
Query: 310 YQFNQGLYDVIIASDEKA---------------LET------------------------ 330
+FNQG+YD IIA+DE L T
Sbjct: 314 QEFNQGVYDYIIATDESGGRGEEDSDDETDAEVLSTQREDPEDGETSKRKPKKRKRTETS 373
Query: 331 ---------PQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTA 381
P S + + D+E GV+RG+DF V+ V+NFD P + Y HR GRTA
Sbjct: 374 ATPDSQHPKPSKRSKGGKVKSTDREYGVTRGVDFIDVACVLNFDLPSSSRAYTHRVGRTA 433
Query: 382 RGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQF 441
R G +LS+V +E+ N + +++ + + + IK Y+F
Sbjct: 434 RAGRTGMSLSYVVPKEEWGKNKIVGCLETAKKDEKTFARIEKEQAARGSK----IKEYKF 489
Query: 442 NLDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDK 476
++ +V+ F YR +DA RS +FEDNP DLE LRHDK
Sbjct: 490 DMAQVEAFRYRMEDALRSVTRAAVKEARIKELKTEILNSDKLKAHFEDNPLDLEYLRHDK 549
Query: 477 ALYTVRIQSHLADVPDYIVP 496
L+ R+Q H+ VP Y++P
Sbjct: 550 PLHPTRVQPHMKHVPKYLLP 569
>gi|242780444|ref|XP_002479596.1| ATP dependent RNA helicase (Dbp9), putative [Talaromyces stipitatus
ATCC 10500]
gi|218719743|gb|EED19162.1| ATP dependent RNA helicase (Dbp9), putative [Talaromyces stipitatus
ATCC 10500]
Length = 620
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 221/590 (37%), Positives = 329/590 (55%), Gaps = 77/590 (13%)
Query: 14 QVYFE-LPFTFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAF 72
Q+ FE LP L QA+ K + +PTL+Q +AIPL L+ KD+L RA+TGSGKT A+
Sbjct: 23 QITFESLPLDPRL----RQALVKENFSKPTLVQSKAIPLALEGKDILARAKTGSGKTAAY 78
Query: 73 AIPMIQKIINLKQT-AQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQV 131
+P++Q I+ K ++ET AL+L P++EL Q+ + I + C + V+ V+++++V
Sbjct: 79 VLPVLQSILQRKSNDLSLKETSALILVPTRELSEQVQRVIVSFSSFCGKAVRSVNLTQKV 138
Query: 132 DVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKA 191
SVQ +L + PDI+++TPAR ++++ L L L ++IDEADLV S+GYEDD+ A
Sbjct: 139 SDSVQRAMLADVPDIIISTPARVVSNVNNSALSL-DHLRQLVIDEADLVLSYGYEDDINA 197
Query: 192 VLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDE 251
+ K +P+ Q L SATL+ +V +LK L RNPVILKL E A ++ + + EDE
Sbjct: 198 LAKAVPRGVQTFLMSATLTSEVDTLKGLFCRNPVILKLTE-AEDEGGGISQFAVRCAEDE 256
Query: 252 KATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQ 311
K + Y + KL LV+GK IIFV +D+CY+LKL+LEQF I +CVLNSELPA +R H V +
Sbjct: 257 KFLLTYVIFKLQLVKGKCIIFVGDIDRCYRLKLFLEQFGIKSCVLNSELPANSRIHVVQE 316
Query: 312 FNQGLYDVIIASDEK-ALETPQIN-----------------------------------S 335
FN+G+YD+IIA+D++ L T +I S
Sbjct: 317 FNKGVYDIIIAADDQEVLGTKKIKKTAAVKNADSNEVDDDAEAEIEESSDDEVQPDESAS 376
Query: 336 TNNRKRK---RDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSF 392
T+N+K+K + K+ G+SRGIDFQ V+ V+NFD P + Y HR GRT R G ALSF
Sbjct: 377 TSNKKQKLSGKQKDYGISRGIDFQNVACVLNFDLPTTSKSYTHRIGRTGRAGKTGMALSF 436
Query: 393 VSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYR 452
V +E+ + T+ + ++ +++ + + HE ++PY F + +V+ F YR
Sbjct: 437 VVPKEEYGKHKPTSYP-TAKHDEAVLSKIIKRQGKLGHE----VRPYHFEMKQVESFRYR 491
Query: 453 AKDAWRS-------------------------NYFEDNPTDLETLRHDKALYTVRIQSHL 487
DA R+ +FE+NP +L LRHD + VRIQ HL
Sbjct: 492 MTDALRAVTRLAIQEARAREIRQELIKSEKLRRHFEENPDELRHLRHDGEIRAVRIQPHL 551
Query: 488 ADVPDYIVPPALKKLARIEDDGDEDVRAEPITDEEYNKQYEEYKKRSKEN 537
VPDY++P K+ ED V ++ K E + + +
Sbjct: 552 KHVPDYLMPSKGKQGLMAEDSQRHGVGIGKTSENRIRKARERNRGKGRRG 601
>gi|156052519|ref|XP_001592186.1| hypothetical protein SS1G_06425 [Sclerotinia sclerotiorum 1980]
gi|160380645|sp|A7EM78.1|DBP9_SCLS1 RecName: Full=ATP-dependent RNA helicase dbp9
gi|154704205|gb|EDO03944.1| hypothetical protein SS1G_06425 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 607
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 209/529 (39%), Positives = 307/529 (58%), Gaps = 64/529 (12%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQ IAK + PTL+Q +AIPL L+ +D+L RA+TGSGKT A+ +P++ I+ K+ +
Sbjct: 36 LQGIAKQNFQSPTLVQSKAIPLTLEGRDILARAKTGSGKTAAYLLPILHSILKRKELSPT 95
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
Q T AL+L P++EL +Q++K ++ T C++DV+ V+++++V +VQ LL + PDIV+A
Sbjct: 96 QCTSALILVPTRELADQVYKTVESFTAFCAKDVRAVNLTQRVSDAVQRSLLADSPDIVIA 155
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TPARA + L L ++L ++IDEADLV S+GY++D++ V K +PK Q +L SATL
Sbjct: 156 TPARASLNANTSAL-LLTNLTHMVIDEADLVLSYGYDEDLQNVAKIMPKGVQTVLMSATL 214
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+ +V +LK L RNP +LKLEE A ++ + + EDEK ++Y + KL L++GK
Sbjct: 215 TSEVETLKGLFCRNPEVLKLEE-AEDEGKGVSQFVVKCAEDEKFLLVYVIFKLKLIKGKC 273
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE---- 325
IIFV +D+CY+LKL+LEQF +C+LNS+LP +R H V +FN+ +YD+IIASDE
Sbjct: 274 IIFVGDIDRCYRLKLFLEQFGTRSCILNSQLPVNSRIHVVEEFNKNVYDIIIASDEHEVL 333
Query: 326 ------KALETPQINSTNNRKRKRD----------------------KESGVSRGIDFQF 357
K ET ++ + + K D KE GVSRGIDF+
Sbjct: 334 GDEDEPKPEETEEVEADDASGEKEDAKDAKKETKQPSKKKQKTGKKDKEYGVSRGIDFKN 393
Query: 358 VSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDL 417
V+ V+NFD P + Y HR GRTAR G ALSFV + T++ E+ L
Sbjct: 394 VACVLNFDLPTSSKSYTHRIGRTARAGQTGMALSFVIPSALYRKHKPTSIESAKDDEKVL 453
Query: 418 MNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS------------------ 459
++ + + +KPY F++ +V F YR DA R+
Sbjct: 454 AK-----IIKHQAKKGKEVKPYNFDMKQVDAFRYRMGDALRAVTSIAVQEAKAREIRQEL 508
Query: 460 -------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPPALKK 501
+FE+NP+DL LRHD L R+Q+HL VPDY++P KK
Sbjct: 509 MKSEKLKRHFEENPSDLYHLRHDGELRPARVQAHLKHVPDYLLPKEGKK 557
>gi|212526270|ref|XP_002143292.1| ATP dependent RNA helicase (Dbp9), putative [Talaromyces marneffei
ATCC 18224]
gi|210072690|gb|EEA26777.1| ATP dependent RNA helicase (Dbp9), putative [Talaromyces marneffei
ATCC 18224]
Length = 621
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 219/575 (38%), Positives = 313/575 (54%), Gaps = 77/575 (13%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQT-AQV 89
QA+ K + +PTL+Q +AIPL L+ KD+L RA+TGSGKT A+ +P++Q I+ K +
Sbjct: 37 QALVKENFSKPTLVQSKAIPLALEGKDILARAKTGSGKTAAYVLPVLQSILQRKSNDPSL 96
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ T AL+L P++EL Q+ + I + C +D++ V+++++V SVQ +L + PDIV++
Sbjct: 97 KATSALILVPTRELSEQVQRVIVSFSSFCGKDIRPVNLTQKVSDSVQRAMLADVPDIVIS 156
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TPAR ++++ L L L ++IDEADLV S+GYEDD+ A+ K +P+ Q L SATL
Sbjct: 157 TPARVVSNVNNSALSL-DHLTQLVIDEADLVLSYGYEDDINALAKAVPRGVQTFLMSATL 215
Query: 210 SEDVLSLKHLILRNPVILKLEEPA--IAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
+ +V +LK L RNPVILKL E +SQ A + EDEK + Y + KL LV+G
Sbjct: 216 TSEVDTLKGLFCRNPVILKLTETEDEGGGISQFA---VRCAEDEKFLLTYVIFKLQLVKG 272
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIA----- 322
K IIFV +D+CY+LKL+LEQF I +CVLNSELPA +R H V +FN+G+YD+IIA
Sbjct: 273 KCIIFVGDIDRCYRLKLFLEQFGIKSCVLNSELPANSRIHVVQEFNKGVYDIIIAADDQE 332
Query: 323 --------------------------------SDEKALETPQINSTNNRKRK---RDKES 347
SDE+A S +N+K+K + K+
Sbjct: 333 VLGTKKIKKTSAIKNADNNENDEDAEAELEESSDEEAQPAENAQSKSNKKQKLSGKQKDY 392
Query: 348 GVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTAL 407
G+SRGIDFQ V+ V+NFD P + Y HR GRT R G ALSFV +E+ + T+
Sbjct: 393 GISRGIDFQNVACVLNFDLPTTSKSYTHRIGRTGRAGKTGMALSFVVPKEEYGKHKPTSY 452
Query: 408 SFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS-------- 459
E L + HE +KPY F + +V+ F YR DA R+
Sbjct: 453 PTAKHDEAVLAKIIKRQSKLG-HE----VKPYHFEMKQVESFRYRMTDALRAVTRLAIQE 507
Query: 460 -----------------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPPALKKL 502
+FE+NP +L LRHD + VRIQ HL VPDY++P K+
Sbjct: 508 ARAREIRQELIKSEKLRRHFEENPDELRHLRHDGEIRAVRIQPHLKHVPDYLMPSKGKQG 567
Query: 503 ARIEDDGDEDVRAEPITDEEYNKQYEEYKKRSKEN 537
ED V ++ K E + + +
Sbjct: 568 LMKEDSQRHGVGIGKTSENRIRKARERNRAKGRRG 602
>gi|169774379|ref|XP_001821657.1| ATP-dependent RNA helicase dbp9 [Aspergillus oryzae RIB40]
gi|91206553|sp|Q2UFL0.1|DBP9_ASPOR RecName: Full=ATP-dependent RNA helicase dbp9
gi|83769520|dbj|BAE59655.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391867816|gb|EIT77056.1| RNA helicase [Aspergillus oryzae 3.042]
Length = 605
Score = 373 bits (958), Expect = e-100, Method: Compositional matrix adjust.
Identities = 206/521 (39%), Positives = 314/521 (60%), Gaps = 59/521 (11%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQT-AQV 89
QA+ K + +PTL+Q +AIPL L+ KD+L RA+TGSGKT A+ +P++Q I+ K T
Sbjct: 40 QALIKEKFTKPTLVQAKAIPLALEGKDILARAKTGSGKTAAYVLPILQTILQKKATDPSF 99
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ T L+L P++EL Q+ + C +DV+ V+++++V +VQ +L + PD+VV+
Sbjct: 100 KATTGLILVPTRELAEQVQNVVTTFAAFCGKDVRSVNLTQKVSDAVQRTMLADYPDLVVS 159
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TPAR + +L + L L++ L ++IDEADLV S+GYE+D+ A+ K +P+ Q L SATL
Sbjct: 160 TPARVVTNLGSSALSLEN-LTHLVIDEADLVLSYGYEEDINALAKAIPRGVQTFLMSATL 218
Query: 210 SEDVLSLKHLILRNPVILKLEEP--AIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
+++V +LK L R+PV LKLE+ A VSQ + + EDEK + Y + KL L++G
Sbjct: 219 TDEVDTLKGLFCRSPVTLKLEDKDDQGAGVSQ---FVVRCAEDEKFLLTYVIFKLQLIKG 275
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE-- 325
K IIFV+ VD+CY++KL+LEQF I +CVLNSELP +R H V +FN+G+YD++IA+DE
Sbjct: 276 KVIIFVDDVDRCYRVKLFLEQFGIKSCVLNSELPINSRIHVVQEFNKGVYDILIAADEQE 335
Query: 326 --------KALETPQINSTN---------NRKRK---RDKESGVSRGIDFQFVSNVINFD 365
K+ ET + S++ +++RK ++K+ G+SRGIDFQ V+ V+NFD
Sbjct: 336 VIGARKSKKSKETEEAGSSDEDEGEPEDKSKRRKVSGKEKDYGISRGIDFQNVACVLNFD 395
Query: 366 FPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYL 425
P + Y HR GRT R G ALSFV ++Q + T+ + S ++ ++ + +
Sbjct: 396 LPSTSKSYTHRIGRTGRAGKTGMALSFVIPKDQHGKHRPTSTA-TSKHDESVLAKIVKRQ 454
Query: 426 MTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS-------------------------N 460
HE +KPY F + +V+ F YR DA R+
Sbjct: 455 GKLGHE----VKPYHFEMKQVEAFRYRMTDALRAVTRLAVQEARAREIRQELIKSEKLKR 510
Query: 461 YFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPPALKK 501
+FE+NP +L LRHD L + R+Q HL +P+Y++P KK
Sbjct: 511 HFEENPEELRQLRHDDELRSARVQPHLKHIPEYLMPAKGKK 551
>gi|326476368|gb|EGE00378.1| ATP-dependent RNA helicase DBP9 [Trichophyton tonsurans CBS 112818]
gi|326484727|gb|EGE08737.1| ATP-dependent RNA helicase DBP9 [Trichophyton equinum CBS 127.97]
Length = 618
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 215/553 (38%), Positives = 310/553 (56%), Gaps = 90/553 (16%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+ + +PTL+Q AIPL L KD+L RA+TGSGKT A+ IP++QKI+ K
Sbjct: 36 LQALTSQNFSKPTLVQAEAIPLALSGKDILARAKTGSGKTAAYLIPILQKILQKKAADPA 95
Query: 90 QET-KALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
++ LVL P++EL Q+HK + + CS+D++ +++++V +VQ LL + PDIV+
Sbjct: 96 HKSISTLVLVPTRELAQQVHKTVTAFSEFCSKDIRSGNLTQKVSDAVQRALLADLPDIVI 155
Query: 149 ATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
+TPARA+ ++ L L ++ V+IDEADL+ S+GYE DM+ + K +P+ Q L SAT
Sbjct: 156 STPARAIVNVNNSALVL-DNISQVVIDEADLLLSYGYEQDMQNLAKAIPRGVQTFLMSAT 214
Query: 209 LSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGK 268
L+ +V +LK L R+P ILKLEE A + ++ + + ED+K + Y + KL LV+GK
Sbjct: 215 LTSEVDTLKGLFCRSPAILKLEE-AEDEGAGISQFAVKCAEDDKFLLTYVIFKLQLVKGK 273
Query: 269 TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE--- 325
IIFV VD+CY+LKL+LEQF I +C+LNSELPA +R HAV +FN+G+YD+IIA+D+
Sbjct: 274 CIIFVGDVDRCYRLKLFLEQFGIKSCILNSELPANSRIHAVEEFNKGVYDIIIAADDQEV 333
Query: 326 -------------------------KALETPQ------INSTNNRKRKR---DKESGVSR 351
K L P+ S N+KRKR +K+ G+SR
Sbjct: 334 IGKIESKKEPSESEVPIADGATEENKDLSEPEEVEEKAAPSNKNKKRKRSGKEKDYGISR 393
Query: 352 GIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLRE----------QDLM 401
GIDFQ V+ V+NFD P + Y HR GRT R G ALSFV E
Sbjct: 394 GIDFQDVACVLNFDLPTTAKSYTHRIGRTGRAGKTGMALSFVVPSELYGKHKPTIFPPAK 453
Query: 402 NDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS-- 459
ND + L+ + R+ + +V KPY F+ +++ F YR DA R+
Sbjct: 454 NDESVLAKIEKRQAKMGREV---------------KPYHFDKKQIEVFRYRMTDALRAVT 498
Query: 460 -----------------------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVP 496
+FE+NP +L LRHD+ L +VR+QS L +VP+Y++P
Sbjct: 499 RIAVQEARAKEIRQELVKSEKLKRHFEENPQELRELRHDQELGSVRVQSQLKNVPEYLMP 558
Query: 497 PALKKLARIEDDG 509
K ED G
Sbjct: 559 TKGKSSLTSEDIG 571
>gi|403414059|emb|CCM00759.1| predicted protein [Fibroporia radiculosa]
Length = 660
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 224/589 (38%), Positives = 315/589 (53%), Gaps = 119/589 (20%)
Query: 21 FTFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKI 80
F+ L L+A+A +G+ PTL+Q +AIPL L+N+D+L RARTGSGKT A+ IP++QK+
Sbjct: 16 FSHILDARLLRALADMGFARPTLVQTKAIPLALENRDILARARTGSGKTAAYCIPLVQKV 75
Query: 81 INLK--QTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEP 138
+N K + Q T+AL+L P++EL Q+ ++ L C ++V +I +Q+
Sbjct: 76 LNAKAVEDPSRQITRALILVPTRELSEQVSAHLNSLIAYCDKEVTIANICTGSTTQLQKT 135
Query: 139 LLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLK--FL 196
LL + PDIV+ATPARAL L++K L L + +VI DEADL+ S+G+++ ++ V + FL
Sbjct: 136 LLSDHPDIVIATPARALTLLQSKALLLDALDTLVI-DEADLILSYGHDESVRQVFQGGFL 194
Query: 197 PKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATIL 256
PK++Q+ L SAT++EDV +LK L+LR+PVILKLEE + L+ Y++ E +K ++
Sbjct: 195 PKVFQSFLMSATMTEDVEALKGLVLRSPVILKLEEDE-DEAANLSQYYVRCSEVDKFLLV 253
Query: 257 YTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGL 316
Y +LKL L++GK I+FVN VD+CY+LKL+LEQF I +CVLNSELP +R H V +FN+G+
Sbjct: 254 YVILKLRLIKGKCILFVNDVDRCYRLKLFLEQFSIKSCVLNSELPLNSRYHTVQEFNKGV 313
Query: 317 YDVIIASDEKALET--------PQINSTNN------------------------------ 338
YD IIASDE A T P S ++
Sbjct: 314 YDYIIASDESAGRTEHDSDEEEPHAESDDDEYTTTQRETLSGQPASDEEKEQPSSSGSSL 373
Query: 339 -RKRKRDK--------------------------ESGVSRGIDFQFVSNVINFDFPLDIQ 371
RKR+ D E GVSRG+DF VS VINFD P +
Sbjct: 374 KRKRRSDTLATEGTAAKSSSKSSKRKQRRRNNDAEYGVSRGVDFVDVSCVINFDLPTSAR 433
Query: 372 CYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHE 431
Y HR GRTAR G ALSFV R+Q N S ++ + V +
Sbjct: 434 SYTHRVGRTARAGRTGMALSFVIPRDQWGRNKVVGSVESSKEDEKVFARVEREQAARGSQ 493
Query: 432 DDFIIKPYQFNLDEVKGFEYRAKDAWRS-------------------------------- 459
+K Y F++ +V+ F YR +DA RS
Sbjct: 494 ----VKEYSFDMKQVEAFRYRMEDALRSVTRSAIKEARIKELKSEILNSDKLKVTTLLLL 549
Query: 460 ------------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVP 496
+FEDNP DLE LRHDK L+ R+Q H+ VP Y++P
Sbjct: 550 FSKAMLIAYGIQAHFEDNPNDLEYLRHDKPLHPTRVQPHMKHVPKYLLP 598
>gi|336368382|gb|EGN96725.1| hypothetical protein SERLA73DRAFT_161756 [Serpula lacrymans var.
lacrymans S7.3]
Length = 634
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 216/591 (36%), Positives = 325/591 (54%), Gaps = 105/591 (17%)
Query: 21 FTFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKI 80
F+ L L+A+A +G+ PTL+Q +AIPL L+ +D+L RARTGSGKT A+ IP++QKI
Sbjct: 16 FSHLLDARILRALADMGFARPTLVQSKAIPLALEGRDILARARTGSGKTAAYCIPVVQKI 75
Query: 81 INLKQTAQVQE-----TKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSV 135
++ K + + + L+L P++EL Q+ ++ L C +++ +++ +
Sbjct: 76 LSAKASLPPDDDAHTSARVLILVPTRELSEQVTAYLRGLVAYCEKNIVLANVASGATSHL 135
Query: 136 QEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVL-- 193
Q LL ++PDIV++TP+R L L++K L L +SL+ +IIDEADL+ S+G+++D++ +
Sbjct: 136 QRALLADKPDIVISTPSRTLGFLQSKALSL-ASLDSLIIDEADLILSYGHDEDIRQIFGG 194
Query: 194 KFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKA 253
++LPK+YQ+ L SAT+++DV +LK L LRNP ILKLEE S L Y + E +K
Sbjct: 195 EYLPKVYQSFLMSATMTDDVETLKGLALRNPAILKLEEGEDEAAS-LTQYAVRCSEVDKF 253
Query: 254 TILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFN 313
+ Y +LKL L++GK I+FVN VD+CY+LKL+LEQF I +CVLNSELP +R H V +FN
Sbjct: 254 LLTYVILKLKLIKGKCILFVNDVDRCYRLKLFLEQFSIKSCVLNSELPLNSRYHTVQEFN 313
Query: 314 QGLYDVIIASDE-----------KALETPQINS--------------------------- 335
+G+YD IIA+DE +A+E Q +
Sbjct: 314 KGVYDYIIATDESGGRAEQDSDDEAVEDQQAQAEEDAVAVVPTQRESTDIENATEALGEV 373
Query: 336 ---TNNRKRKR---------------------DKESGVSRGIDFQFVSNVINFDFPLDIQ 371
T ++KRKR DKE GV+RG+DF V+ V+NFD P +
Sbjct: 374 QSETGSKKRKRTEGSSTPGPSKSRKRKHRKGKDKEYGVTRGVDFVDVACVLNFDLPTSSR 433
Query: 372 CYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHE 431
Y HR GRTAR G +LSFV +Q N + +++ + + + + +
Sbjct: 434 SYTHRVGRTARAGRTGMSLSFVVSEDQWGKNKAVGCLESAKKDELVFSKIEKEQAARGSK 493
Query: 432 DDFIIKPYQFNLDEVKGFEYRAKDAWRS-------------------------NYFEDNP 466
IK Y F++ +V+ F YR +D R+ +FEDNP
Sbjct: 494 ----IKEYNFDMKQVEAFRYRMEDGLRAVTRSAIKEARVKELKTEIINSEKLKAHFEDNP 549
Query: 467 TDLETLRHDKALYTVRIQSHLADVPDYIVPPALKKLARIEDDGDEDVRAEP 517
DLE LRHDK L+ R+Q+H+ VP Y++P K+A + D D EP
Sbjct: 550 LDLEYLRHDKPLHPTRVQAHMKHVPKYLLP----KIAAV-DSAFADAELEP 595
>gi|336381184|gb|EGO22336.1| hypothetical protein SERLADRAFT_416842 [Serpula lacrymans var.
lacrymans S7.9]
Length = 633
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 216/590 (36%), Positives = 325/590 (55%), Gaps = 104/590 (17%)
Query: 21 FTFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKI 80
F+ L L+A+A +G+ PTL+Q +AIPL L+ +D+L RARTGSGKT A+ IP++QKI
Sbjct: 16 FSHLLDARILRALADMGFARPTLVQSKAIPLALEGRDILARARTGSGKTAAYCIPVVQKI 75
Query: 81 INLKQTAQVQE-----TKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSV 135
++ K + + + L+L P++EL Q+ ++ L C +++ +++ +
Sbjct: 76 LSAKASLPPDDDAHTSARVLILVPTRELSEQVTAYLRGLVAYCEKNIVLANVASGATSHL 135
Query: 136 QEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVL-- 193
Q LL ++PDIV++TP+R L L++K L L +SL+ +IIDEADL+ S+G+++D++ +
Sbjct: 136 QRALLADKPDIVISTPSRTLGFLQSKALSL-ASLDSLIIDEADLILSYGHDEDIRQIFGG 194
Query: 194 KFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKA 253
++LPK+YQ+ L SAT+++DV +LK L LRNP ILKLEE S L Y + E +K
Sbjct: 195 EYLPKVYQSFLMSATMTDDVETLKGLALRNPAILKLEEGEDEAAS-LTQYAVRCSEVDKF 253
Query: 254 TILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFN 313
+ Y +LKL L++GK I+FVN VD+CY+LKL+LEQF I +CVLNSELP +R H V +FN
Sbjct: 254 LLTYVILKLKLIKGKCILFVNDVDRCYRLKLFLEQFSIKSCVLNSELPLNSRYHTVQEFN 313
Query: 314 QGLYDVIIASDE-----------KALETPQINS--------------------------- 335
+G+YD IIA+DE +A+E Q +
Sbjct: 314 KGVYDYIIATDESGGRAEQDSDDEAVEDQQAQAEEDVAVVPTQRESTDIENATEALGEVQ 373
Query: 336 --TNNRKRKR---------------------DKESGVSRGIDFQFVSNVINFDFPLDIQC 372
T ++KRKR DKE GV+RG+DF V+ V+NFD P +
Sbjct: 374 SETGSKKRKRTEGSSTPGPSKSRKRKHRKGKDKEYGVTRGVDFVDVACVLNFDLPTSSRS 433
Query: 373 YIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHED 432
Y HR GRTAR G +LSFV +Q N + +++ + + + + +
Sbjct: 434 YTHRVGRTARAGRTGMSLSFVVSEDQWGKNKAVGCLESAKKDELVFSKIEKEQAARGSK- 492
Query: 433 DFIIKPYQFNLDEVKGFEYRAKDAWRS-------------------------NYFEDNPT 467
IK Y F++ +V+ F YR +D R+ +FEDNP
Sbjct: 493 ---IKEYNFDMKQVEAFRYRMEDGLRAVTRSAIKEARVKELKTEIINSEKLKAHFEDNPL 549
Query: 468 DLETLRHDKALYTVRIQSHLADVPDYIVPPALKKLARIEDDGDEDVRAEP 517
DLE LRHDK L+ R+Q+H+ VP Y++P K+A + D D EP
Sbjct: 550 DLEYLRHDKPLHPTRVQAHMKHVPKYLLP----KIAAV-DSAFADAELEP 594
>gi|170087916|ref|XP_001875181.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650381|gb|EDR14622.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 620
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 219/534 (41%), Positives = 311/534 (58%), Gaps = 79/534 (14%)
Query: 36 LGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLK-----QTAQVQ 90
+G+ PTL+Q +AIPL L+ +D+L RARTGSGKT A+ +PM+QKI++ K + + +
Sbjct: 31 MGFARPTLVQAKAIPLALEGRDILARARTGSGKTAAYCVPMVQKILSAKSGLDEEDQRRR 90
Query: 91 ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVAT 150
T+AL+L P++EL Q+ ++ L C +D+ +++ +Q LL ++PDIV+AT
Sbjct: 91 ATRALILVPTRELSEQVSTYMRGLLAYCDKDIIYSNLATGTTTHLQRTLLSDQPDIVIAT 150
Query: 151 PARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLK--FLPKLYQAILASAT 208
P+RALA L++K L L S +VI DEADL+ S+G++DD++++ FLPK+YQ+ L SAT
Sbjct: 151 PSRALALLQSKVLSLSSLDSLVI-DEADLILSYGHDDDIRSIFSSGFLPKVYQSFLMSAT 209
Query: 209 LSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGK 268
++EDV LK L LRNP ILKLEE + L+ Y + E +K + Y +LK+ L++GK
Sbjct: 210 MTEDVEILKGLALRNPAILKLEEDE-DEAANLSQYAVRCSEVDKFLLTYVILKVKLIKGK 268
Query: 269 TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE--- 325
I+FVN VD+ Y+LKL+LEQF I +CVLNSELP +R H V +FN+G+YD IIA+DE
Sbjct: 269 CILFVNDVDRSYRLKLFLEQFSIKSCVLNSELPLNSRYHVVQEFNKGVYDYIIATDEAGA 328
Query: 326 ---------------KALETPQINSTNNR-KRKR----------------------DKES 347
++L+T Q ++T ++ KRKR DKE
Sbjct: 329 RAEYDTDEEVEQASQQSLDTEQPSATTDKGKRKRSNSSPAPSARKTRKRKHRKAGGDKEY 388
Query: 348 GVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTAL 407
GV+RG+DF V+ V+NFD P + Y HR GRTAR G +LSFV R D +
Sbjct: 389 GVTRGVDFVDVACVLNFDLPTSSRSYTHRVGRTARAGRTGMSLSFVVPR--DKWGKNKVV 446
Query: 408 SFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS-------- 459
+ EQD M V + IK YQF++ +V+ F YR +DA RS
Sbjct: 447 GCLPSAEQDEM--VFSKIEKEQGARGSKIKEYQFDMKQVEAFRYRMEDALRSVTRTAIKE 504
Query: 460 -----------------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVP 496
+FEDNP DLE LRHDK L+ RIQ H+ VP Y++P
Sbjct: 505 ARVKELKTEILNSEKLKAHFEDNPLDLEYLRHDKPLHPTRIQPHMKHVPKYLLP 558
>gi|134034084|sp|Q0CY48.2|DBP9_ASPTN RecName: Full=ATP-dependent RNA helicase dbp9
Length = 619
Score = 370 bits (949), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 214/573 (37%), Positives = 321/573 (56%), Gaps = 74/573 (12%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQT-AQV 89
QA+ K + +PTL+Q +AIPL L+ KD+L RA+TGSGKT A+ +P++Q I+ K +
Sbjct: 40 QALVKEKFTKPTLVQAKAIPLALEGKDILARAKTGSGKTAAYVLPILQTILQKKANDPSL 99
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ T L+L P++EL Q+ I C +DV+ V+++++V +VQ +L + PD++V+
Sbjct: 100 KATTGLILVPTRELAEQVQNVITTFAAFCGKDVRSVNLTQKVSDAVQRTMLADYPDLIVS 159
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP+R +A+L + L L++ L ++IDEADLV S+GY++D+ A+ K +P+ Q L SATL
Sbjct: 160 TPSRVIANLGSSALSLEN-LTHLVIDEADLVLSYGYDEDINALAKAIPRGVQTFLMSATL 218
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+ +V +LK L R+PVILKLE+ S ++ + + EDEK + Y + KL L++GK
Sbjct: 219 TAEVDTLKGLFCRSPVILKLEDKDDQG-SGVSQFVVKCAEDEKFLLTYVIFKLQLIKGKV 277
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL- 328
IIFV VD+CY++KL+LEQF I +CVLNSELP +R H V +FN+G+YD+IIA+DE+ +
Sbjct: 278 IIFVGDVDRCYRVKLFLEQFGIKSCVLNSELPVNSRLHVVQEFNKGVYDIIIAADEQEVM 337
Query: 329 ---------------------------------ETPQINSTNNRKRK---RDKESGVSRG 352
T + + + ++RK +DK+ G+SRG
Sbjct: 338 GARKSKKSKEAEENDAGEAAGSSDEDEGEAQKPSTTRSDKPSEKRRKTAGKDKDYGISRG 397
Query: 353 IDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSL 412
IDFQ V+ V+NFD P + Y HR GRT R G ALSFV +Q + T+ +
Sbjct: 398 IDFQNVACVLNFDLPTTSKSYTHRIGRTGRAGKTGMALSFVVPADQFGKHKPTSFP-TAK 456
Query: 413 REQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS------------- 459
++ ++ + + HE +KPY F + +V F YR DA RS
Sbjct: 457 HDETVLAKITKRQAKLGHE----VKPYHFEMKQVDAFRYRMTDALRSITRLAVQEARARE 512
Query: 460 ------------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPPALKKLARIED 507
+FE+NP +L LRHD L + RIQ HL +PDY++P KK E+
Sbjct: 513 IRQELIKSEKLKRHFEENPEELRQLRHDDELRSARIQPHLKHIPDYLMPSKGKKGISSEN 572
Query: 508 DGDEDVRAEPITDEEYNKQYEEYKKRSKENERN 540
G R T E ++ E K R K RN
Sbjct: 573 VGYVGFRK---TSENRIRKARE-KNRGKGKGRN 601
>gi|169849877|ref|XP_001831637.1| ATP-dependent RNA helicase dbp9 [Coprinopsis cinerea okayama7#130]
gi|116507275|gb|EAU90170.1| ATP-dependent RNA helicase dbp9 [Coprinopsis cinerea okayama7#130]
Length = 633
Score = 369 bits (948), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 216/573 (37%), Positives = 317/573 (55%), Gaps = 97/573 (16%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQT--- 86
L+A+A +G+ PTL+Q +AIPL L+++D+L RARTGSGKT A+ IP++QKI++ K
Sbjct: 25 LRALADMGFARPTLVQAKAIPLALESRDILARARTGSGKTAAYCIPVVQKILSAKNGLDE 84
Query: 87 --AQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERP 144
+ + T+AL+L P++EL Q+ ++ L + C ++V + + +Q+ LL ++P
Sbjct: 85 DDPKRRATRALILVPTRELAEQVSGYLRTLLVYCDQEVTLCNATSGSASHLQKQLLADQP 144
Query: 145 DIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLK--FLPKLYQA 202
DI++ATP+R L+ +++K L L S++ ++IDEADL+ S+G++DD++ + K PK+YQ+
Sbjct: 145 DILIATPSRTLSLVQSKALSL-GSIDSLVIDEADLILSYGHDDDVRQLFKGSHFPKVYQS 203
Query: 203 ILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKL 262
L SAT++EDV LK L LRNP ILKLEE + L Y + E +K + Y +LKL
Sbjct: 204 FLMSATMTEDVEMLKGLTLRNPAILKLEE-GEDEAALLTQYAVRCSEVDKFLLTYVILKL 262
Query: 263 NLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIA 322
L++GK IIFVN VD+ Y+LKL+LEQF I +CVLNSELP +R H V +FN+G+YD IIA
Sbjct: 263 KLIKGKCIIFVNDVDRSYRLKLFLEQFSIKSCVLNSELPLNSRYHTVQEFNKGVYDYIIA 322
Query: 323 SDEKALE------------------------------------TPQINSTNNRKRKR--- 343
+DE ++ +P+ + +KRKR
Sbjct: 323 TDEAGVQDEYDTEDEDEGDGEGEEFTSTQRGEADENEASEEEESPKKSKNQGKKRKRVDS 382
Query: 344 -----------------DKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQ 386
DKE GV+RG+DF V+ V+NFD P + Y HR GRTAR
Sbjct: 383 PEPSSKSKKRKQSKHVSDKEYGVTRGVDFVDVACVLNFDLPTSSRSYTHRVGRTARAGRT 442
Query: 387 GTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEV 446
G +LSFV RE L + + E D V + + IK Y F++ +V
Sbjct: 443 GMSLSFVVPRE--LWGKDKVVGGLPSAEHD--EKVFKRIEKEQGARGSTIKEYNFDMKQV 498
Query: 447 KGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKALYTV 481
+ F YR +DA RS +FEDNP DLE LRHDK L+
Sbjct: 499 EAFRYRMQDALRSVTRAAIREARVKELKTEILNSDKLKAHFEDNPLDLEYLRHDKPLHPA 558
Query: 482 RIQSHLADVPDYIVP---PALKKLARIEDDGDE 511
R+Q H+ +P Y++P PA+ A +G E
Sbjct: 559 RVQPHMKHIPKYLLPRIAPAVNAEASSGAEGTE 591
>gi|51948394|ref|NP_001004211.1| probable ATP-dependent RNA helicase DDX56 [Rattus norvegicus]
gi|50925531|gb|AAH78919.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 [Rattus norvegicus]
Length = 482
Score = 368 bits (945), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 201/460 (43%), Positives = 289/460 (62%), Gaps = 53/460 (11%)
Query: 76 MIQKIINLKQTAQVQE--TKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDV 133
M+Q +++ K T V E + LVL P+KEL Q IQ+L C+RDV+ ++S D
Sbjct: 1 MLQLLLHKKATGPVMEQAVRGLVLVPTKELARQAQSMIQQLASYCARDVRVANVSAAEDS 60
Query: 134 SVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVL 193
+ Q +L+E+PD+VV TP+R L HL+ K L L+ SLE++++DEADL+FSFG+ED++K++L
Sbjct: 61 ASQRAVLMEKPDVVVGTPSRILNHLQQKNLKLRDSLELLVVDEADLLFSFGFEDELKSLL 120
Query: 194 KFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQ-EDEK 252
LP++YQA L SAT +EDV +LK L+L NPV LKL+E + QL + ++ + E++K
Sbjct: 121 CHLPRIYQAFLMSATFNEDVQTLKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDK 180
Query: 253 ATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQF 312
+LY LLKL+L++GK ++FVNT+++ Y+L+L+LEQF I +CVLN ELP ++RCH + QF
Sbjct: 181 FLLLYALLKLSLIRGKALLFVNTLERGYRLRLFLEQFSIPSCVLNGELPLRSRCHIISQF 240
Query: 313 NQGLYDVIIASDEKALETPQINST-NNRKRKRDK----ESGVSRGIDFQFVSNVINFDFP 367
NQGLYD +IA+D + L PQ+ + R K DK ESGV+RGIDF VS V+NFD P
Sbjct: 241 NQGLYDCVIATDAEIL-GPQVKAKRQGRGSKGDKASDPESGVARGIDFHHVSAVLNFDLP 299
Query: 368 LDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMT 427
+ Y+HRAGRTAR N G L+FV EQ + + ++L++ +
Sbjct: 300 PTAEAYVHRAGRTARANNPGIVLTFVLPTEQSSLG----------KIEELLSGEGQAP-- 347
Query: 428 NLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS-------------------------NYF 462
I+ PYQF ++E++ F YR +DA RS YF
Sbjct: 348 -------ILLPYQFQMEEIESFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYF 400
Query: 463 EDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPPALKKL 502
EDNP DL+ LRHD L+ ++ HL +VPDY+VP AL+ L
Sbjct: 401 EDNPRDLQLLRHDLPLHPAVVKPHLGNVPDYLVPAALRGL 440
>gi|322700573|gb|EFY92327.1| ATP-dependent RNA helicase dbp9 [Metarhizium acridum CQMa 102]
Length = 612
Score = 368 bits (944), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 209/524 (39%), Positives = 298/524 (56%), Gaps = 58/524 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
+QA+A+ +L+PTL+Q +AIPL L KDVL +++TGSGKT A+ +P++ I+ K V
Sbjct: 43 VQAVAEQTFLKPTLVQRKAIPLALNGKDVLCKSKTGSGKTAAYVLPVLTAILKKKAAETV 102
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T AL+L P++EL +Q+ K I++ + C++DV+ V +++++ +VQ LL PDIV++
Sbjct: 103 AATSALILVPTRELADQVFKVIEQFSSFCAKDVRAVKLTDKLSDAVQRSLLSTNPDIVIS 162
Query: 150 TPARALAHLKAKTLDLK-SSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
TPARA ++K+ L L +++DEADL+ S+GY++D++ + +PK Q I+ SAT
Sbjct: 163 TPARAWYNVKSNQSSLSLDKLTHLVLDEADLLLSYGYDEDLENLSWSIPKGIQTIMMSAT 222
Query: 209 LSEDVLSLKHLILRN--PVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQ 266
L+ ++ SLK R+ P +L LEEP A + EDEK + Y + KL LV+
Sbjct: 223 LTTEIDSLKKTFYRDNAPTLLDLEEPD-AEGEGITQLFTKCAEDEKFLLAYIIFKLQLVK 281
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
GK IIFV VD+CY+LKL+ EQF I +C+LNSELP +R H V +FN+ +YD+IIASDEK
Sbjct: 282 GKCIIFVGDVDRCYRLKLFFEQFGIRSCILNSELPVNSRIHVVEEFNRNVYDIIIASDEK 341
Query: 327 AL-----------------------ETPQINSTNNRK-RKRDKESGVSRGIDFQFVSNVI 362
+ E + RK KRDKE GVSRGIDF+ V+ VI
Sbjct: 342 EVLGNEEKADEEENHEGDQEEDSDAEKEERRPKKKRKASKRDKEYGVSRGIDFKNVAAVI 401
Query: 363 NFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVN 422
NFD P Y HR GRTAR G ALSFV +EQ + T++ E+ L
Sbjct: 402 NFDLPTSASSYTHRVGRTARAGKAGMALSFVIPKEQFRKHMPTSIQSAENDEKVLARITK 461
Query: 423 EYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS----------------------- 459
+ IKPY FN +V+ F YR DA R+
Sbjct: 462 QQAKKGKE-----IKPYNFNTKQVEAFRYRMNDALRAVTKVAVREARTRELRQELMKSEK 516
Query: 460 --NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPPALKK 501
YFE+NP+++ LRHD L T R Q+HL +PDY++P KK
Sbjct: 517 LKRYFEENPSEINHLRHDGELRTARQQAHLKHIPDYLLPKDGKK 560
>gi|239610502|gb|EEQ87489.1| ATP-dependent RNA helicase DBP9 [Ajellomyces dermatitidis ER-3]
Length = 628
Score = 368 bits (944), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 205/538 (38%), Positives = 300/538 (55%), Gaps = 78/538 (14%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+ + + +PTLIQ AIPL L KDVL RA+TGSGKT A+ +P++Q I+ K
Sbjct: 36 LQALTQQKFTKPTLIQAEAIPLALDGKDVLARAKTGSGKTAAYLLPILQSILQKKTNDPT 95
Query: 90 QET-KALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
+ L+L P++EL Q+HK + + +D++ +++++V +VQ +L + PDIV+
Sbjct: 96 HKAISTLILVPTRELAEQVHKTVTSFSAFAGKDIRSTNLTQKVSDAVQRSILADLPDIVI 155
Query: 149 ATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
+TPARA+ ++ + L L+ L ++IDEADLV S+GYE+DM+++ K +P+ QA L SAT
Sbjct: 156 STPARAVVNINSSALTLQH-LTHLVIDEADLVLSYGYEEDMQSLAKAVPRGVQAFLMSAT 214
Query: 209 LSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGK 268
+ +V +LK L RNPV+LKLEE ++ + + EDEK + Y + KL LV+GK
Sbjct: 215 FTSEVDALKGLFCRNPVVLKLEEKEDEGAG-ISQFVVRCAEDEKFLLTYVIFKLQLVKGK 273
Query: 269 TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL 328
IIFV VD+CY+LKL+LEQF I +CVLNSELP +R H V +FN+G+YD+IIA+D++ +
Sbjct: 274 CIIFVGDVDRCYRLKLFLEQFGIRSCVLNSELPVNSRIHVVQEFNKGVYDIIIAADDQEV 333
Query: 329 --ETPQ-------------------------INSTNN------------------RKRKR 343
E P+ + +TNN +K +
Sbjct: 334 LGELPKKPRKPSRKSDQSSKDPEQENDDGSGVKTTNNYLQDSSEDETKARPSKRPKKSAK 393
Query: 344 DKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND 403
+K+ G+SRGIDFQ V+ V+NFD P + + Y HR GRT R G ALSFV +Q +
Sbjct: 394 EKDYGISRGIDFQDVACVLNFDLPTNSKSYTHRIGRTGRAGKTGMALSFVVPSDQFGKHK 453
Query: 404 GTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS---- 459
T+ S E L + +KPY F + +V F YR DA R+
Sbjct: 454 PTSFSSAKHDEAVLGKIIKRQGKLGRE-----VKPYHFEMKQVDAFRYRMSDALRAVTRV 508
Query: 460 ---------------------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVP 496
+FE+NP +L LRHD L R+Q+HL VPDY++P
Sbjct: 509 AVQEARAREIRQELVKSEKLKRHFEENPEELRQLRHDGELRAARVQAHLKHVPDYLMP 566
>gi|322711278|gb|EFZ02852.1| ATP-dependent RNA helicase dbp9 [Metarhizium anisopliae ARSEF 23]
Length = 612
Score = 367 bits (943), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 208/524 (39%), Positives = 299/524 (57%), Gaps = 58/524 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
+QA+A+ +L+PTL+Q +AIPL L KDVL +++TGSGKT A+ +P++ I+ K V
Sbjct: 43 VQAVAEQTFLKPTLVQRKAIPLALNGKDVLCKSKTGSGKTAAYVLPVLTAILKKKTAETV 102
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T AL+L P++EL +Q+ K I++ + C++DV+ V +++++ +VQ LL PDIV++
Sbjct: 103 AATSALILVPTRELADQVFKVIEQFSSFCAKDVRAVKLTDKLSDAVQRSLLSTNPDIVIS 162
Query: 150 TPARALAHLKAKTLDLK-SSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
TPARA ++K+ L L +++DEADL+ S+GY++D++ + +PK Q I+ SAT
Sbjct: 163 TPARAWYNVKSNQSSLSLDKLTHLVLDEADLLLSYGYDEDLENLSWSIPKGIQTIMMSAT 222
Query: 209 LSEDVLSLKHLILRN--PVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQ 266
L+ ++ SLK + R+ P +L LEEP A + EDEK + Y + KL LV+
Sbjct: 223 LTAEIESLKKIFYRDNAPTLLDLEEPD-AEGEGITQLVTKCAEDEKFLLAYIIFKLQLVK 281
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
GK IIFV +D+CY+LKL+ EQF I +C+LNSELP +R H V +FN+ +YD+IIASDEK
Sbjct: 282 GKCIIFVGDIDRCYRLKLFFEQFGIRSCILNSELPVNSRIHVVEEFNRNVYDIIIASDEK 341
Query: 327 AL-----------------------ETPQINSTNNRK-RKRDKESGVSRGIDFQFVSNVI 362
+ E + RK KRDKE GVSRGIDF+ V+ VI
Sbjct: 342 EVLGNEEKADEEENNEDEQEEDSDAEKEERRPKKKRKASKRDKEYGVSRGIDFKNVAAVI 401
Query: 363 NFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVN 422
NFD P Y HR GRTAR G ALSFV +EQ + T++ E+ L
Sbjct: 402 NFDLPTSASSYTHRIGRTARAGKAGMALSFVIPKEQFRKHMPTSIQSAENDEKVLARITR 461
Query: 423 EYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS----------------------- 459
+ IKPY FN +V+ F YR DA R+
Sbjct: 462 QQAKKGKE-----IKPYNFNTKQVEAFRYRMNDALRAVTKVAVREARTRELRQELMKSEK 516
Query: 460 --NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPPALKK 501
YFE+NP+++ LRHD L T R Q+HL +PDY++P KK
Sbjct: 517 LKRYFEENPSEINHLRHDGELRTARQQAHLKHIPDYLLPKDGKK 560
>gi|406602502|emb|CCH45896.1| hypothetical protein BN7_5483 [Wickerhamomyces ciferrii]
Length = 579
Score = 367 bits (941), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 203/538 (37%), Positives = 327/538 (60%), Gaps = 58/538 (10%)
Query: 15 VYFELPFTFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNK-DVLVRARTGSGKTG 70
VY + +F F + +QAI +LG+ PTL+Q +AIPL LQ K D++ +A TGSGKT
Sbjct: 9 VYIDDSISFESFKLDPRLIQAIKQLGFKNPTLVQSKAIPLALQEKRDIIAKASTGSGKTV 68
Query: 71 AFAIPMIQKIINLK--QTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDIS 128
A+++P++Q I+N K + E +++L P+KEL Q+ +++L + C + +K +++S
Sbjct: 69 AYSVPVVQSILNAKANNNSSDHEISSIILVPTKELATQVTSFLEKLILYCGKSIKILNLS 128
Query: 129 EQVDVSVQEPLLVERPDIVVATPARALAHLKAK--TLDLKSSLEIVIIDEADLVFSFGYE 186
Q++ VQ LL+E P+I+V+TP+R + L+ ++DL S L ++IDE DL+ S+GY+
Sbjct: 129 NQINEQVQHSLLLENPEILVSTPSRLINSLQKNNDSIDL-SKLTYLVIDEVDLILSYGYQ 187
Query: 187 DDMKAVLKFLP--KLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYH 244
+D+ + +LP K Q L SATLSED+ LK R+P ILKL + + S+L Y+
Sbjct: 188 EDLDKLASYLPLKKTLQTFLMSATLSEDIQDLKTKFCRSPAILKLNDDELNNKSKLVQYY 247
Query: 245 ILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKA 304
E +K + Y + KLNL++GKT+IFVN +D+ Y+LKL+LEQF I +C+LNSELP +
Sbjct: 248 AKTTEFDKFLLSYVIFKLNLIKGKTLIFVNNIDRGYRLKLFLEQFGIKSCILNSELPINS 307
Query: 305 RCHAVYQFNQGLYDVIIASDEK-----------------ALETPQINSTNNRKRKRDKES 347
R H V ++N+ +Y+++IA+D+ +E ++ + K K+DKE
Sbjct: 308 RLHIVDEYNKNVYNLLIATDDSDNIQENDEEDEDQEGEGEVENNDKSNKKDSKLKKDKEY 367
Query: 348 GVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTAL 407
GVSRG+DF+ V+ V+NFD PL + Y+HR GRTAR G +LSFV + E+++ +
Sbjct: 368 GVSRGVDFKNVACVLNFDLPLSAKSYVHRVGRTARAGKAGISLSFV-IPEKEVGKHKASF 426
Query: 408 SFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS-------- 459
+ R++ ++ + + ++ F IKPYQF++ +V+GF YR++DA+RS
Sbjct: 427 LKSTKRDEKILRRI----IKQQNKLGFEIKPYQFDMKQVEGFRYRSEDAFRSVTQVSIRE 482
Query: 460 -----------------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPPALK 500
+FE+NP DL +LRHDK L+ R+Q+HL +P+Y++P +
Sbjct: 483 ARVKELKNELLTNEKLKRHFEENPQDLASLRHDKELHPARVQTHLKRIPNYLLPEGAR 540
>gi|261195464|ref|XP_002624136.1| ATP-dependent RNA helicase DBP9 [Ajellomyces dermatitidis SLH14081]
gi|239588008|gb|EEQ70651.1| ATP-dependent RNA helicase DBP9 [Ajellomyces dermatitidis SLH14081]
Length = 628
Score = 365 bits (938), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 204/538 (37%), Positives = 299/538 (55%), Gaps = 78/538 (14%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+ + + +PTLIQ AIPL L KDVL RA+TGSGKT A+ +P++Q I+ K
Sbjct: 36 LQALTQQKFTKPTLIQAEAIPLALDGKDVLARAKTGSGKTAAYLLPILQSILQKKTNDPT 95
Query: 90 QET-KALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
+ L+L P++EL Q+HK + + +D++ +++++V +VQ +L + PDIV+
Sbjct: 96 HKAISTLILVPTRELAEQVHKTVTSFSAFAGKDIRSTNLTQKVSDAVQRSILADLPDIVI 155
Query: 149 ATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
+TPARA+ ++ + L L+ L ++IDEADLV S+GYE+DM+++ +P+ QA L SAT
Sbjct: 156 STPARAVVNINSSALTLQH-LTHLVIDEADLVLSYGYEEDMQSLANAVPRGVQAFLMSAT 214
Query: 209 LSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGK 268
+ +V +LK L RNPV+LKLEE ++ + + EDEK + Y + KL LV+GK
Sbjct: 215 FTSEVDALKGLFCRNPVVLKLEEKEDEGAG-ISQFVVRCAEDEKFLLTYVIFKLQLVKGK 273
Query: 269 TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL 328
IIFV VD+CY+LKL+LEQF I +CVLNSELP +R H V +FN+G+YD+IIA+D++ +
Sbjct: 274 CIIFVGDVDRCYRLKLFLEQFGIRSCVLNSELPVNSRIHVVQEFNKGVYDIIIAADDQEV 333
Query: 329 --ETPQ-------------------------INSTNN------------------RKRKR 343
E P+ + +TNN +K +
Sbjct: 334 LGELPKKPRKPSRKSDQSSKDPEQENDDGSGVKTTNNYLQDSSEDETKARPSKRPKKSAK 393
Query: 344 DKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND 403
+K+ G+SRGIDFQ V+ V+NFD P + + Y HR GRT R G ALSFV +Q +
Sbjct: 394 EKDYGISRGIDFQDVACVLNFDLPTNSKSYTHRIGRTGRAGKTGMALSFVVPSDQFGKHK 453
Query: 404 GTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS---- 459
T+ S E L + +KPY F + +V F YR DA R+
Sbjct: 454 PTSFSSAKHDEAVLGKIIKRQGKLGRE-----VKPYHFEMKQVDAFRYRMSDALRAVTRV 508
Query: 460 ---------------------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVP 496
+FE+NP +L LRHD L R+Q+HL VPDY++P
Sbjct: 509 AVQEARAREIRQELVKSEKLKRHFEENPEELRQLRHDGELRAARVQAHLKHVPDYLMP 566
>gi|71002100|ref|XP_755731.1| ATP dependent RNA helicase (Dbp9) [Aspergillus fumigatus Af293]
gi|74675200|sp|Q4X0C2.1|DBP9_ASPFU RecName: Full=ATP-dependent RNA helicase dbp9
gi|66853369|gb|EAL93693.1| ATP dependent RNA helicase (Dbp9), putative [Aspergillus fumigatus
Af293]
gi|159129787|gb|EDP54901.1| ATP dependent RNA helicase (Dbp9), putative [Aspergillus fumigatus
A1163]
Length = 649
Score = 365 bits (938), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 212/544 (38%), Positives = 306/544 (56%), Gaps = 74/544 (13%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQT-AQV 89
QA+ K + +PT +Q +AIPL L+ KD+L RA+TGSGKT A+ +P++Q I+ K +
Sbjct: 70 QALIKEQFTKPTPVQSKAIPLALEGKDILARAKTGSGKTAAYVLPILQTILQKKAADPSL 129
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ T L+L P++EL Q+ I + + C +DV+ V+++++V +VQ +L + PD++V+
Sbjct: 130 KATTGLILVPTRELAEQVQSVIIKFSAFCGKDVRSVNLTQKVSDAVQRTMLADYPDLIVS 189
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TPAR +A+L L L++ L ++IDEADLV S+GY++D+ A+ K +P+ Q L SATL
Sbjct: 190 TPARVIANLGTSALSLEN-LTHLVIDEADLVLSYGYDEDINALAKAIPRGVQTFLMSATL 248
Query: 210 SEDVLSLKHLILRNPVILKLE--EPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
+ +V +LK L R+PVILKLE E A +SQ + + EDEK + Y + KL L++G
Sbjct: 249 TSEVDTLKGLFCRSPVILKLEDKEDEGAGISQ---FVVRCAEDEKFLLTYVIFKLQLIKG 305
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK- 326
K IIFV +D+CY+LKL+LEQF I +CVLNSELP +R H V +FN+G+YD+IIA+DE+
Sbjct: 306 KVIIFVGDIDRCYRLKLFLEQFGIKSCVLNSELPINSRIHVVQEFNKGVYDIIIAADEQE 365
Query: 327 --ALET----------------------------PQINSTNNRKRKRDKES------GVS 350
L T P+ + + R KR K S G+S
Sbjct: 366 VMGLRTSSKKSKEATDGDDEAKDKMGSSEDEDNEPEQSGKSARPEKRRKTSGKAKDYGIS 425
Query: 351 RGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFV 410
RGIDFQ V+ V+NFD P + Y HR GRT R G ALSFV ++ + T+
Sbjct: 426 RGIDFQNVACVLNFDLPTTSKSYTHRIGRTGRAGKAGMALSFVVPADKFGKHKPTSFPTA 485
Query: 411 SLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS----------- 459
E L V + HE +KPY F + +V F YR DA R+
Sbjct: 486 KHDESVLAKIVKKQAKLG-HE----VKPYHFEMKQVDAFRYRMTDALRAVTRLAIQEARA 540
Query: 460 --------------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPPALKKLARI 505
+FE+NP +L+ LRHD L RIQ HL +PDY++P +K
Sbjct: 541 REIRQELVKSEKLKRHFEENPEELKQLRHDGELRAARIQPHLKHIPDYLMPSKGRKGISS 600
Query: 506 EDDG 509
ED G
Sbjct: 601 EDVG 604
>gi|121716290|ref|XP_001275754.1| ATP dependent RNA helicase (Dbp9), putative [Aspergillus clavatus
NRRL 1]
gi|134034082|sp|A1C7F7.1|DBP9_ASPCL RecName: Full=ATP-dependent RNA helicase dbp9
gi|119403911|gb|EAW14328.1| ATP dependent RNA helicase (Dbp9), putative [Aspergillus clavatus
NRRL 1]
Length = 621
Score = 365 bits (937), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 215/577 (37%), Positives = 320/577 (55%), Gaps = 86/577 (14%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQT-AQV 89
QA+ K + +PT +Q +AIPL L+ KD+L RA+TGSGKT A+ +P++Q I+ K +
Sbjct: 40 QALIKEQFTKPTPVQSKAIPLALEGKDILARAKTGSGKTAAYVLPILQTILQKKAADPSL 99
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ T L+L P++EL Q+ I + T C +DV+ V+++++V +VQ +L + PD++V+
Sbjct: 100 KATTGLILVPTRELAEQVQSVITKFTAFCGKDVRSVNLTQKVSDAVQRTMLADYPDLIVS 159
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TPAR +A+L + L L +L ++IDEADLV S+GY++D+ A+ K +P+ Q L SATL
Sbjct: 160 TPARVIANLGSSALAL-DNLTHLVIDEADLVLSYGYDEDINALAKAIPRGVQTFLMSATL 218
Query: 210 SEDVLSLKHLILRNPVILKLE--EPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
+ +V +LK L RNPV+LKLE E A +SQ + + EDEK + Y + KL L++G
Sbjct: 219 TSEVDTLKGLFCRNPVVLKLEDKEDEGAGISQ---FVVRCAEDEKFLLTYVIFKLQLIKG 275
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
K IIFV +D+CY++KL+LEQF I +CVLNSELP +R H V +FN+G+YD+IIA+DE+
Sbjct: 276 KVIIFVGDIDRCYRVKLFLEQFGIKSCVLNSELPINSRIHVVQEFNKGVYDIIIAADEQE 335
Query: 328 L-------------------ET-------------PQIN---STNNRKRK----RDKESG 348
+ ET P+ N S + KR+ + K+ G
Sbjct: 336 VMGARTTFKKSKEITDGDEEETRDKMGSSEDEDNEPEDNDKKSAHPEKRRKTSGKGKDYG 395
Query: 349 VSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALS 408
+SRGIDFQ V+ V+NFD P + Y HR GRT R G ALSFV ++ + T+
Sbjct: 396 ISRGIDFQNVACVLNFDLPTTSKSYTHRIGRTGRAGKAGMALSFVVPADEFGKHKPTSFP 455
Query: 409 FVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS--------- 459
E L V + HE +KPY F + +V F YR DA RS
Sbjct: 456 TAKYDESVLAKIVKRQAKLD-HE----VKPYHFEMKQVDAFRYRMTDALRSVTRLAIQEA 510
Query: 460 ----------------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPPALKKLA 503
+FE+NP +L+ LRHD L RIQ HL +PDY++P
Sbjct: 511 RAREIRQELVKSEKLKRHFEENPEELKQLRHDGELRAARIQPHLKHIPDYLMP------- 563
Query: 504 RIEDDGDEDVRAEPITDEEYNKQYEEYKKRSKENERN 540
G + + +E + + KQ + ++++E R
Sbjct: 564 ---SKGRKGISSENVGYVGFTKQSDNRIRKAREKNRG 597
>gi|402216480|gb|EJT96567.1| DEAD-domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 621
Score = 365 bits (937), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 213/557 (38%), Positives = 308/557 (55%), Gaps = 93/557 (16%)
Query: 22 TFTLFCIPL-----QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPM 76
TFT PL +A+A L +L PT IQ RAIPL L+ +D+L RARTGSGKT A+ +P+
Sbjct: 15 TFTSISPPLDFRLLRALADLSFLRPTPIQARAIPLALEGRDILARARTGSGKTAAYCLPV 74
Query: 77 IQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQ 136
Q+I+ + T+ L+L P++EL Q+ K + C +V +I+ +S
Sbjct: 75 TQRILQARNAGGRHATRGLILVPTRELAEQVKKFLDGALKYCQNEVMVSNIAAGAQLS-- 132
Query: 137 EPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLK-- 194
+ LL E PDIV++TP++ L+ L +K L L +S+E ++IDEADL+ S+G++ D++ +L+
Sbjct: 133 KTLLTEIPDIVISTPSKVLSALSSKYLTL-ASVESLVIDEADLILSYGHDADVRKLLQGD 191
Query: 195 FLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKAT 254
+LP +YQ+ L SAT++EDV L+ ++LRNP IL+LE+ +A L+ Y + E++K
Sbjct: 192 YLPNIYQSFLMSATMTEDVEQLRGMVLRNPAILRLEDTDVA--RSLSQYSVHCSEEDKFL 249
Query: 255 ILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQ 314
+LY +LKL L++GK IIFVN+ D+CY+LKL+LEQF I CVL++ELP +R H V +FN
Sbjct: 250 LLYVILKLRLIRGKCIIFVNSPDRCYRLKLFLEQFSIRACVLDAELPLNSRFHIVQEFNS 309
Query: 315 GLYDVIIASDEKAL---------------------------------------------- 328
GLYD ++A+DE +
Sbjct: 310 GLYDYVVATDESGVAAEGEEADQTKKEDTVIVEEQTTEISTQPDEDAIIESSTGDSLKRK 369
Query: 329 ETPQINSTNNRKRKR----DKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384
+P+ S N +KRK DKE GVSRGIDF VS VINFD P + Y HR GRTAR
Sbjct: 370 RSPEPASQNKKKRKSRVRTDKEYGVSRGIDFVDVSCVINFDLPPTSRAYTHRIGRTARAG 429
Query: 385 NQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLD 444
G A+SF+ L N +SL +V + ++ + + IK + F
Sbjct: 430 KTGIAISFIVLFAHWGKN-----KIISLPGAKEDENVFDRILKD-QSNRGGIKEWTFEEK 483
Query: 445 EVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKALY 479
+V+ F YRA DA R+ +FEDNP DL LRHDK L+
Sbjct: 484 QVEAFRYRAGDAMRAVTRAAVREARIKEVKEEILKSEKLKAHFEDNPLDLAYLRHDKPLH 543
Query: 480 TVRIQSHLADVPDYIVP 496
RIQSH+ +P Y++P
Sbjct: 544 PQRIQSHMKHIPSYLIP 560
>gi|119481657|ref|XP_001260857.1| ATP dependent RNA helicase (Dbp9), putative [Neosartorya fischeri
NRRL 181]
gi|134034085|sp|A1DHV3.1|DBP9_NEOFI RecName: Full=ATP-dependent RNA helicase dbp9
gi|119409011|gb|EAW18960.1| ATP dependent RNA helicase (Dbp9), putative [Neosartorya fischeri
NRRL 181]
Length = 619
Score = 365 bits (936), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 210/544 (38%), Positives = 304/544 (55%), Gaps = 74/544 (13%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQT-AQV 89
QA+ + + +PT +Q +AIPL L+ KD+L RA+TGSGKT A+ +P++Q I+ K +
Sbjct: 40 QALIREQFTKPTPVQSKAIPLALEGKDILARAKTGSGKTAAYVLPILQTILQKKAADPSL 99
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ T LVL P++EL Q+ I + + C +DV+ V+++++V +VQ +L + PD++V+
Sbjct: 100 KATTGLVLVPTRELAEQVQSVIIKFSAFCGKDVRSVNLTQKVSDAVQRTMLADYPDLIVS 159
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TPAR +A+L L L+ L ++IDEADLV S+GY++D+ A+ K +P+ Q L SATL
Sbjct: 160 TPARVIANLGTSALSLEH-LTHLVIDEADLVLSYGYDEDINALAKAIPRGVQTFLMSATL 218
Query: 210 SEDVLSLKHLILRNPVILKLE--EPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
+ +V +LK L R+PVILKLE E A +SQ + + EDEK + Y + KL L++G
Sbjct: 219 TSEVDTLKGLFCRSPVILKLEDKEDEGAGISQ---FVVRCAEDEKFLLTYVIFKLQLIKG 275
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
K IIFV +D+CY+LKL+LEQF I +CVLNSELP +R H V +FN+G+YD+IIA+DE+
Sbjct: 276 KVIIFVGDIDRCYRLKLFLEQFGIKSCVLNSELPINSRIHVVQEFNKGVYDIIIAADEQE 335
Query: 328 L-------------------------------ETPQINSTNNRKRKRDKES------GVS 350
+ P+ + + R KR K S G+S
Sbjct: 336 VMGSRTSSKKSKEATDGDDEAKDKMGSSEDEDNEPEQSGKSARPEKRRKTSGKAKDYGIS 395
Query: 351 RGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFV 410
RGIDFQ V+ V+NFD P + Y HR GRT R G ALSFV ++ + T+
Sbjct: 396 RGIDFQNVACVLNFDLPTTSKSYTHRIGRTGRAGKAGMALSFVVPADEFGKHKPTSFPTA 455
Query: 411 SLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS----------- 459
E L V + HE +KPY F + +V F YR DA R+
Sbjct: 456 KHDESVLAKIVKKQAKLG-HE----VKPYHFEMKQVDAFRYRMTDALRAVTRLAIQEARA 510
Query: 460 --------------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPPALKKLARI 505
+FE+NP +L+ LRHD L RIQ HL +PDY++P +K
Sbjct: 511 REIRQELVKSEKLKRHFEENPEELKQLRHDGELRAARIQPHLKHIPDYLMPSKGRKGISS 570
Query: 506 EDDG 509
ED G
Sbjct: 571 EDVG 574
>gi|119581497|gb|EAW61093.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56, isoform CRA_a [Homo
sapiens]
Length = 375
Score = 365 bits (936), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 184/357 (51%), Positives = 255/357 (71%), Gaps = 7/357 (1%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+ LGW PTLIQE+AIPL L+ KD+L RARTGSGKT A+AIPM+Q +++ K T V
Sbjct: 19 LQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQLLLHRKATGPV 78
Query: 90 --QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
Q + LVL P+KEL Q IQ+L C+RDV+ ++S D Q +L+E+PD+V
Sbjct: 79 VEQAVRGLVLVPTKELARQAQSMIQQLATYCARDVRVANVSAAEDSVSQRAVLMEKPDVV 138
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
V TP+R L+HL+ +L L+ SLE++++DEADL+FSFG+E+++K++L LP++YQA L SA
Sbjct: 139 VGTPSRILSHLQQDSLKLRDSLELLVVDEADLLFSFGFEEELKSLLCHLPRIYQAFLMSA 198
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQ-EDEKATILYTLLKLNLVQ 266
T +EDV +LK LIL NPV LKL+E + QL + ++ + E++K +LY LLKL+L++
Sbjct: 199 TFNEDVQALKELILHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLLLYALLKLSLIR 258
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
GK+++FVNT+++ Y+L+L+LEQF I TCVLN ELP ++RCH + QFNQG YD +IA+D +
Sbjct: 259 GKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGELPLRSRCHIISQFNQGFYDCVIATDAE 318
Query: 327 ALETPQINSTNNRKRKRDK----ESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGR 379
L P R K DK E+GV+RGIDF VS V+NFD P + YIHRAGR
Sbjct: 319 VLGAPVKGKRRGRGPKGDKASDPEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGR 375
>gi|115384408|ref|XP_001208751.1| hypothetical protein ATEG_01386 [Aspergillus terreus NIH2624]
gi|114196443|gb|EAU38143.1| hypothetical protein ATEG_01386 [Aspergillus terreus NIH2624]
Length = 637
Score = 364 bits (935), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 215/591 (36%), Positives = 321/591 (54%), Gaps = 92/591 (15%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV- 89
QA+ K + +PTL+Q +AIPL L+ KD+L RA+TGSGKT A+ +P++Q I+ K V
Sbjct: 40 QALVKEKFTKPTLVQAKAIPLALEGKDILARAKTGSGKTAAYVLPILQTILQKKAVRTVT 99
Query: 90 ------------------QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQV 131
+ T L+L P++EL Q+ I C +DV+ V+++++V
Sbjct: 100 SSIAIYFLTVPFQNDPSLKATTGLILVPTRELAEQVQNVITTFAAFCGKDVRSVNLTQKV 159
Query: 132 DVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKA 191
+VQ +L + PD++V+TP+R +A+L + L L++ L ++IDEADLV S+GY++D+ A
Sbjct: 160 SDAVQRTMLADYPDLIVSTPSRVIANLGSSALSLEN-LTHLVIDEADLVLSYGYDEDINA 218
Query: 192 VLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDE 251
+ K +P+ Q L SATL+ +V +LK L R+PVILKLE+ S ++ + + EDE
Sbjct: 219 LAKAIPRGVQTFLMSATLTAEVDTLKGLFCRSPVILKLEDKDDQG-SGVSQFVVKCAEDE 277
Query: 252 KATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQ 311
K + Y + KL L++GK IIFV VD+CY++KL+LEQF I +CVLNSELP +R H V +
Sbjct: 278 KFLLTYVIFKLQLIKGKVIIFVGDVDRCYRVKLFLEQFGIKSCVLNSELPVNSRLHVVQE 337
Query: 312 FNQGLYDVIIASDEKAL----------------------------------ETPQINSTN 337
FN+G+YD+IIA+DE+ + T + + +
Sbjct: 338 FNKGVYDIIIAADEQEVMGARKSKKSKEAEENDAGEAAGSSDEDEGEAQKPSTTRSDKPS 397
Query: 338 NRKRK---RDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVS 394
++RK +DK+ G+SRGIDFQ V+ V+NFD P + Y HR GRT R G ALSFV
Sbjct: 398 EKRRKTAGKDKDYGISRGIDFQNVACVLNFDLPTTSKSYTHRIGRTGRAGKTGMALSFVV 457
Query: 395 LREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAK 454
+Q + T+ + ++ ++ + + HE +KPY F + +V F YR
Sbjct: 458 PADQFGKHKPTSFP-TAKHDETVLAKITKRQAKLGHE----VKPYHFEMKQVDAFRYRMT 512
Query: 455 DAWRS-------------------------NYFEDNPTDLETLRHDKALYTVRIQSHLAD 489
DA RS +FE+NP +L LRHD L + RIQ HL
Sbjct: 513 DALRSITRLAVQEARAREIRQELIKSEKLKRHFEENPEELRQLRHDDELRSARIQPHLKH 572
Query: 490 VPDYIVPPALKKLARIEDDGDEDVRAEPITDEEYNKQYEEYKKRSKENERN 540
+PDY++P KK E+ G R T E ++ E K R K RN
Sbjct: 573 IPDYLMPSKGKKGISSENVGYVGFRK---TSENRIRKARE-KNRGKGKGRN 619
>gi|327303856|ref|XP_003236620.1| ATP-dependent RNA helicase DBP9 [Trichophyton rubrum CBS 118892]
gi|326461962|gb|EGD87415.1| ATP-dependent RNA helicase DBP9 [Trichophyton rubrum CBS 118892]
Length = 613
Score = 364 bits (935), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 212/552 (38%), Positives = 309/552 (55%), Gaps = 89/552 (16%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+ + +PTL+Q AIPL L KD+L RA+TGSGKT A+ IP+IQKI+ K
Sbjct: 36 LQALTSQKFSKPTLVQAEAIPLALSGKDILARAKTGSGKTAAYLIPIIQKILQKKAVDPA 95
Query: 90 QET-KALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
++ L+L P++EL Q+HK + + CS+D++ +++++V +VQ LL + PDIV+
Sbjct: 96 HKSISTLILVPTRELAQQVHKTVTAFSEFCSKDIRSGNLTQKVSDAVQRALLADLPDIVI 155
Query: 149 ATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
+TPARA+ ++ L L ++ V+IDEADLV S+GYE DM+ + K +P+ Q L SAT
Sbjct: 156 STPARAIVNVNNSALAL-DTISQVVIDEADLVLSYGYEQDMQNLAKAIPRGVQTFLMSAT 214
Query: 209 LSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGK 268
L+ +V +LK L R+P ILKLEE A + ++ + + ED+K + Y + KL LV+GK
Sbjct: 215 LTSEVDTLKGLFCRSPAILKLEE-AEDEGAGISQFAVKCAEDDKFLLTYVIFKLQLVKGK 273
Query: 269 TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL 328
IIFV VD+CY+LKL+LEQF I +C+LNSELPA +R HAV +FN+G+YD+IIA+D++ +
Sbjct: 274 CIIFVGDVDRCYRLKLFLEQFGIKSCILNSELPANSRIHAVEEFNKGVYDIIIAADDQEV 333
Query: 329 --------ET----------------------------PQINSTNNRKRKRDKESGVSRG 352
ET P N +K +++K+ G+SRG
Sbjct: 334 IGKIESKKETSESEVPITDAATEENKDLSEPEEVEEKLPPSNKKKRKKSEKEKDYGISRG 393
Query: 353 IDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLRE----------QDLMN 402
IDFQ V+ V+NFD P + Y HR GRT R G ALSFV E N
Sbjct: 394 IDFQDVACVLNFDLPTTAKSYTHRIGRTGRAGKTGMALSFVVPSELYGKHKPTIFPPAKN 453
Query: 403 DGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS--- 459
D + L+ + R+ + +V KPY F+ +++ F YR DA R+
Sbjct: 454 DESVLAKIEKRQAKMGREV---------------KPYHFDKKQIEVFRYRMTDALRAVTR 498
Query: 460 ----------------------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPP 497
+FE+NP +L LRHD+ L +VR+QS L +VP+Y++P
Sbjct: 499 IAVQEARAKEIRQELVKSEKLKRHFEENPQELRELRHDQELGSVRVQSQLKNVPEYLMPT 558
Query: 498 ALKKLARIEDDG 509
K ED G
Sbjct: 559 KGKSSLTSEDIG 570
>gi|225563337|gb|EEH11616.1| ATP-dependent RNA helicase DBP9 [Ajellomyces capsulatus G186AR]
Length = 624
Score = 364 bits (934), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 206/543 (37%), Positives = 299/543 (55%), Gaps = 93/543 (17%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+ + + +PTLIQ AIPL L KDVL RA+TGSGKT A+ +P++Q I+ K
Sbjct: 36 LQALTQQKFTKPTLIQAEAIPLALDGKDVLARAKTGSGKTAAYLLPVLQSILQQKMNNPA 95
Query: 90 QET-KALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
++ AL+L P++EL Q+H+ + +D++ +++++V +VQ LL + PDIVV
Sbjct: 96 HKSISALILVPTRELAEQVHRTAISFSAFSGKDIRSANLTQKVSDAVQRALLADLPDIVV 155
Query: 149 ATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
+TPARA+A++ + L L+ L ++IDEADLV S+GYE+DM+ + K +P+ Q L SAT
Sbjct: 156 STPARAVANVNSSALSLER-LTHLVIDEADLVLSYGYEEDMQNLAKAVPRGVQTFLMSAT 214
Query: 209 LSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGK 268
+ +V +LK L RNPV+LKLEE ++ + + EDEK + Y + KL LV+GK
Sbjct: 215 FTSEVDTLKGLFCRNPVVLKLEEKEDEGAG-ISQFVVRCAEDEKFLLTYVIFKLQLVKGK 273
Query: 269 TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL 328
IIFV VD+CY+LKL+LEQF I +CVLNSELP +R H V +FN+G+YD+IIA+D++ +
Sbjct: 274 CIIFVGDVDRCYRLKLFLEQFGIRSCVLNSELPVNSRIHVVQEFNKGVYDIIIAADDQEV 333
Query: 329 ------------------------ETPQINSTNN----------------RKRKRDKESG 348
+ Q + N+ +K ++K+ G
Sbjct: 334 LGELRKNSKKQPRKSDQSSRDSEYDGAQASKNNDQYSSEDDAETQPSKRPKKSAKEKDYG 393
Query: 349 VSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQ---------- 398
+SRGIDFQ V+ V+NFD P + Y HR GRT R G ALSFV +Q
Sbjct: 394 ISRGIDFQNVACVLNFDLPTTSKSYTHRIGRTGRAGKTGMALSFVIPSDQFGKHKPTSIP 453
Query: 399 DLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWR 458
+D LS + R+ L +V KPY F++ +V F YR DA R
Sbjct: 454 SAKHDEAMLSKIIKRQGKLGREV---------------KPYHFDMKQVDAFRYRMSDALR 498
Query: 459 S-------------------------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDY 493
+ +FE+NP +L LRHD L R+Q+HL VPDY
Sbjct: 499 AVTRVAVQEARAREIRQELVKSEKLKRHFEENPEELRQLRHDGELRAARVQAHLKHVPDY 558
Query: 494 IVP 496
++P
Sbjct: 559 LMP 561
>gi|213409936|ref|XP_002175738.1| ATP-dependent RNA helicase dbp9 [Schizosaccharomyces japonicus
yFS275]
gi|212003785|gb|EEB09445.1| ATP-dependent RNA helicase dbp9 [Schizosaccharomyces japonicus
yFS275]
Length = 563
Score = 364 bits (934), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 216/550 (39%), Positives = 321/550 (58%), Gaps = 62/550 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AI K G+ PTL+Q +AIPL L+ D+LVRARTGSGKT ++ IP+I++I+ K++ +
Sbjct: 22 LRAIEKNGFETPTLVQSKAIPLALKGHDLLVRARTGSGKTASYLIPIIEQILRKKESKSL 81
Query: 90 QETK--ALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
L+L P++EL Q+ K +++LT CS++++ +++ V +VQ+PLL++ PD+V
Sbjct: 82 TTGGILGLILVPTRELAQQVMKVLEKLTAFCSKNIRFTNLASNVSTAVQKPLLLDLPDLV 141
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
+ATP+RA+AH+ A + L L +VI DEADLVFSFGY+DD+ + K LP+ Q+ L SA
Sbjct: 142 IATPSRAVAHITAGNMSLNELLYLVI-DEADLVFSFGYKDDIVTLTKSLPQGCQSFLMSA 200
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
TL+++ SLK L+ RNPV LKLEE QL Y + E EK + Y L KL+L++G
Sbjct: 201 TLNDNTDSLKGLVCRNPVTLKLEESEAE--GQLTQYVVKCGEQEKFLLAYVLFKLSLIKG 258
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
K ++FVN +D+CY+LKL+LEQF I + VLNSELP R H V QFN+GLY +IIA+DE
Sbjct: 259 KILVFVNEIDRCYRLKLFLEQFGIKSLVLNSELPINTRMHIVDQFNKGLYQIIIAADEGE 318
Query: 328 LETPQINSTNNRKRKRDK--------------ESGVSRGIDFQFVSNVINFDFPLDIQCY 373
+ + N + + E GV+RG+DF+ V+ V+NFD P + Y
Sbjct: 319 RDDEGVEEQANTETEAQSSGESKKSKHGKKDKEYGVARGLDFEDVACVLNFDMPTTTKSY 378
Query: 374 IHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDD 433
IHR GRTAR G +LSFV + + + T L+ S ++ +E ++ L +
Sbjct: 379 IHRVGRTARAGKPGISLSFVVPKNEVGKHRPTTLA--SCKK-------DERVLHRLEKKG 429
Query: 434 FIIKPYQFNLDEVKGFEYRAKDAWRS-------------------------NYFEDNPTD 468
+ PY+FN ++ + F+YR +DA RS +YF +NP D
Sbjct: 430 IELAPYKFNKEQTQAFQYRMEDALRSVTRVAVQEARTAELKQEILASEKLKSYFSENPDD 489
Query: 469 LETLRHDKA--LYTVRIQSHLADVPDYIVPPALKKLARIEDDGDEDVRAEPITDEEYNKQ 526
L +L HD A + R Q HL VPDY++P + +A +V P T + K
Sbjct: 490 LVSLTHDTAASVRMARTQKHLKHVPDYLLPKGKQAVA-------AEVGFVPYTKQNGRKH 542
Query: 527 YEEYKKRSKE 536
+ + R K+
Sbjct: 543 VQRSRTRGKQ 552
>gi|440633789|gb|ELR03708.1| ATP-dependent RNA helicase dbp9 [Geomyces destructans 20631-21]
Length = 620
Score = 364 bits (934), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 202/538 (37%), Positives = 301/538 (55%), Gaps = 73/538 (13%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQAIAK + PTL+Q++AIPL ++ +DVL RA+TGSGKT A+ +P++ I+ K+ +
Sbjct: 35 LQAIAKQNFKAPTLVQKKAIPLAIKGRDVLARAKTGSGKTAAYLLPILHAILKQKEISTK 94
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T AL+L P++EL +Q+ K ++ T C++DV+ ++++++V +VQ LL + PDIVVA
Sbjct: 95 PCTAALILVPTRELADQVFKAVELFTSFCAKDVRAINLTQKVSDAVQRSLLADAPDIVVA 154
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TPARA ++ L L +L ++IDEADLV S+GY++D++ V K + K Q IL SATL
Sbjct: 155 TPARAALNINTSALSL-DNLTHLVIDEADLVLSYGYDEDLQNVAKTMRKGVQTILMSATL 213
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+ +V +LK L RNP +LKL+E +++ Y + EDEK ++Y + KL L++GK
Sbjct: 214 TSEVDTLKGLFCRNPAVLKLDEQN-DEGEEISQYVVKCAEDEKFLLIYVIFKLKLIKGKC 272
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL- 328
I+FV +D+CY+LKL+LEQF I +C+LNSELP +R H V +FN+ +YD+IIASDE +
Sbjct: 273 IVFVQDIDRCYRLKLFLEQFGIKSCILNSELPVNSRIHVVAEFNKNVYDIIIASDEYEII 332
Query: 329 ----ETPQINSTNNRKRKRDK------------------------------------ESG 348
+ P++ + K E G
Sbjct: 333 GDEEDAPRVQELEEATPEEPKKAAGDDEMEVDVAESEEVVKEEKPAKKKRKQAKRDKEYG 392
Query: 349 VSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALS 408
VSRGIDF+ V+ V+NFDFP + Y HR GRT R G ALSFV +Q + T++
Sbjct: 393 VSRGIDFKNVACVLNFDFPTTSKSYTHRVGRTGRAGQSGMALSFVIPADQYRKHKPTSVE 452
Query: 409 FVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS--------- 459
E+ L + +KPY F++ +V+ F YR DA R+
Sbjct: 453 SCKHDEEVLAKIIRHQTKKGKE-----VKPYNFDMKQVEAFRYRMGDALRAVTRIAVREA 507
Query: 460 ----------------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPPALKK 501
+FE+NP DL LRHD L ++Q H+ VP Y++P +K
Sbjct: 508 RTRELRQELMKSDKLKRHFEENPEDLHHLRHDGELRAAKVQGHMKHVPSYLMPSGGQK 565
>gi|355747655|gb|EHH52152.1| Putative ATP-dependent RNA helicase DDX56 [Macaca fascicularis]
Length = 475
Score = 363 bits (933), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 195/446 (43%), Positives = 277/446 (62%), Gaps = 51/446 (11%)
Query: 83 LKQTAQV--QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLL 140
L QT V Q + LVL P+KEL Q IQ+L C+RDV+ ++S D + Q +L
Sbjct: 18 LLQTGPVVEQAVRGLVLVPTKELARQAQSMIQQLATYCARDVRVANVSAAEDSASQRAML 77
Query: 141 VERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLY 200
+E+PD+VV TP+R L+HL+ +L L+ SLE++++DEADL+FSFG+E+++K++L LP++Y
Sbjct: 78 MEKPDVVVGTPSRILSHLQQDSLKLRDSLELLVVDEADLLFSFGFEEELKSLLCHLPRIY 137
Query: 201 QAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQ-EDEKATILYTL 259
QA L SAT +EDV +LK L+L NPV LKL+E + QL + ++ + E++K +LY L
Sbjct: 138 QAFLMSATFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLLLYAL 197
Query: 260 LKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDV 319
LKL+L++GK+++FVNT+++ Y+L+L+LEQF I TCVLN ELP ++RCH + QFNQG YD
Sbjct: 198 LKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGELPLRSRCHIISQFNQGFYDC 257
Query: 320 IIASDEKALETPQINSTNNRKRKRDK----ESGVSRGIDFQFVSNVINFDFPLDIQCYIH 375
+IA+D + L P R K DK E+GV+RGIDF VS V+NFD P + YIH
Sbjct: 258 VIATDAEVLGAPVKGKRRGRGPKGDKASDPEAGVARGIDFHHVSAVLNFDLPPTPEAYIH 317
Query: 376 RAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFI 435
RAGRTAR N G L+FV EQ + + ++L++ N I
Sbjct: 318 RAGRTARANNPGIVLTFVLPTEQSHLG----------KIEELLSGENR---------GPI 358
Query: 436 IKPYQFNLDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLE 470
+ PYQF ++E++GF YR +DA RS YFEDNP DL+
Sbjct: 359 LLPYQFRMEEIEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQ 418
Query: 471 TLRHDKALYTVRIQSHLADVPDYIVP 496
LRHD L+ ++ HL VPDY+ P
Sbjct: 419 LLRHDLPLHPAVVKPHLGHVPDYLAP 444
>gi|164659008|ref|XP_001730629.1| hypothetical protein MGL_2425 [Malassezia globosa CBS 7966]
gi|159104525|gb|EDP43415.1| hypothetical protein MGL_2425 [Malassezia globosa CBS 7966]
Length = 576
Score = 363 bits (933), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 208/498 (41%), Positives = 297/498 (59%), Gaps = 46/498 (9%)
Query: 38 WLEPTLIQERAIPLILQN--KDVLVRARTGSGKTGAFAIPMIQKIINLKQ-----TAQVQ 90
+ PT +Q ++ L +D+L RARTGSGKT A+ +P+IQKI+ KQ +
Sbjct: 29 YSTPTPVQRESLEHSLGGVARDILARARTGSGKTLAYGLPVIQKILAEKQDIPRSSTAYA 88
Query: 91 ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVAT 150
T+ALVL PS+EL Q + + + C V+ +I+ V SVQ+ LL E+PDIVVAT
Sbjct: 89 NTRALVLVPSRELAEQATRQLSAILTYCRDVVQVANIARSVKASVQKLLLSEKPDIVVAT 148
Query: 151 PARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLK--FLPKLYQAILASAT 208
P+RALA L++ L ++ SL+ ++IDE DLV S+GY+ D+KA+L FL + +Q L SAT
Sbjct: 149 PSRALACLQSGDLVIRDSLQSLVIDETDLVLSYGYDADVKAILHEGFLSRTHQTFLMSAT 208
Query: 209 LSEDVLSLKHLILRNPVILKLE-EPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
L +D +L+ L+L++PV+L+LE +P A + L Y++ E +K ++Y +LKL L++G
Sbjct: 209 LDDDTNALRGLMLKDPVVLRLEHDPTTA--ANLTQYYVYTSEQDKFLLVYVILKLRLIRG 266
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
K ++FVN +D+CY+LKL+LEQF + TCVLN ELP +R H V +FN+G YD IIA+D A
Sbjct: 267 KCLLFVNDIDRCYRLKLFLEQFGLRTCVLNEELPVNSRFHIVEEFNKGKYDYIIATDVNA 326
Query: 328 LE---TP-QINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARG 383
E TP + +S+ + K +R KE VSRGIDF V+ VINFD P + Y HR GRTAR
Sbjct: 327 AELDPTPAKSSSSASSKSQRSKEFSVSRGIDFVAVACVINFDLPTSTRAYTHRIGRTARA 386
Query: 384 KNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNL 443
N GTALSF+ R + S EQ V + ++ + I P+ ++
Sbjct: 387 GNTGTALSFIVPRSEFGQKKAIGCSTCKYDEQ-----VWDRILADQKAHGLQIHPWNYDH 441
Query: 444 DEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKAL 478
+V F YR +DA RS +FE NP DLE LRHD+AL
Sbjct: 442 TQVDAFRYRMEDALRSVTKVAIKEARIQEIKQEILNSEALKAHFEQNPRDLEYLRHDRAL 501
Query: 479 YTVRIQSHLADVPDYIVP 496
+ R+Q+H+ VP Y+ P
Sbjct: 502 HPARVQAHMKHVPSYLRP 519
>gi|240275931|gb|EER39444.1| ATP-dependent RNA helicase DBP9 [Ajellomyces capsulatus H143]
Length = 621
Score = 361 bits (927), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 208/543 (38%), Positives = 301/543 (55%), Gaps = 93/543 (17%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+ + + +PT IQ AIPL L KDVL RA+TGSGKT A+ +P++Q I+ K
Sbjct: 33 LQALTQQKFTKPTPIQAEAIPLALDGKDVLARAKTGSGKTAAYLLPVLQSILQQKMNNPT 92
Query: 90 QET-KALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
++ AL+L P++EL Q+H+ + +DV+ V+++++V +VQ LL + PDIVV
Sbjct: 93 HKSISALILVPTRELAEQVHRTAILFSAFSGKDVRSVNLTQKVSDAVQRSLLADLPDIVV 152
Query: 149 ATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
+TPARA+ ++ + L L+ L ++IDEADLV S+GYE+DM+++ K +P+ Q L SAT
Sbjct: 153 STPARAVTNVNSSALSLER-LTHLVIDEADLVLSYGYEEDMQSLAKAVPRGVQTFLMSAT 211
Query: 209 LSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGK 268
+ +V +LK L RNPV+LKLEE ++ + + EDEK + Y + KL LV+GK
Sbjct: 212 FTSEVDTLKGLFCRNPVVLKLEEKEDEGAG-ISQFVVRCAEDEKFLLTYVIFKLQLVKGK 270
Query: 269 TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL 328
IIFV VD+CY+LKL+LEQF I +CVLNSELP +R H V +FN+G+YD+IIA+D++ +
Sbjct: 271 CIIFVGDVDRCYRLKLFLEQFGIRSCVLNSELPVNSRIHVVQEFNKGVYDIIIAADDQEV 330
Query: 329 ---------ETPQIN--------------STNN-----------------RKRKRDKESG 348
+ P+ + S NN +K ++K+ G
Sbjct: 331 LGELRKNSKKQPRKSDQSSRDSEYDGAQPSNNNDQYSSEDDAETQPSKRPKKSAKEKDYG 390
Query: 349 VSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQ---------- 398
+SRGIDFQ V+ V+NFD P + Y HR GRT R G ALSFV +Q
Sbjct: 391 ISRGIDFQNVACVLNFDLPTTSKSYTHRIGRTGRAGKSGMALSFVIPSDQFGKHKPTSIP 450
Query: 399 DLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWR 458
+D LS + R+ L +V KPY F++ +V F YR DA R
Sbjct: 451 SAKHDEAMLSKIIKRQGKLGREV---------------KPYHFDMKQVDAFRYRMSDALR 495
Query: 459 S-------------------------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDY 493
+ +FE+NP +L LRHD L R+Q+HL VPDY
Sbjct: 496 AVTRVAVQEARAREIRQELVKSEKLKRHFEENPEELRELRHDGELRAARVQAHLKHVPDY 555
Query: 494 IVP 496
++P
Sbjct: 556 LMP 558
>gi|325093293|gb|EGC46603.1| ATP-dependent RNA helicase DBP9 [Ajellomyces capsulatus H88]
Length = 621
Score = 361 bits (927), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 205/533 (38%), Positives = 299/533 (56%), Gaps = 73/533 (13%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+ + + +PT IQ AIPL L KDVL RA+TGSGKT A+ +P++Q I+ K
Sbjct: 33 LQALTQQKFTKPTPIQAEAIPLALDGKDVLARAKTGSGKTAAYLLPVLQSILQQKMNNPT 92
Query: 90 QET-KALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
++ AL+L P++EL Q+H+ + +DV+ V+++++V +VQ LL + PDIVV
Sbjct: 93 HKSISALILVPTRELAEQVHRTAILFSAFSGKDVRSVNLTQKVSDAVQRSLLADLPDIVV 152
Query: 149 ATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
+TPARA+ ++ + L L+ L ++IDEADLV S+GYE+DM+++ K +P+ Q L SAT
Sbjct: 153 STPARAVTNVNSSALSLER-LTHLVIDEADLVLSYGYEEDMQSLAKAVPRGVQTFLMSAT 211
Query: 209 LSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGK 268
+ +V +LK L RNPV+LKLEE ++ + + EDEK + Y + KL LV+GK
Sbjct: 212 FTSEVDTLKGLFCRNPVVLKLEEKEDEGAG-ISQFVVRCAEDEKFLLTYVIFKLQLVKGK 270
Query: 269 TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL 328
IIFV VD+CY+LKL+LEQF I +CVLNSELP +R H V +FN+G+YD+IIA+D++ +
Sbjct: 271 CIIFVGDVDRCYRLKLFLEQFGIRSCVLNSELPVNSRIHVVQEFNKGVYDIIIAADDQEV 330
Query: 329 ---------ETPQIN--------------STNN-----------------RKRKRDKESG 348
+ P+ + S NN +K ++K+ G
Sbjct: 331 LGELRKNSKKQPRKSDQSSRDSEYDGAQPSNNNDQYSSEDDAETQPSKRPKKSAKEKDYG 390
Query: 349 VSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALS 408
+SRGIDFQ V+ V+NFD P + Y HR GRT R G ALSFV +Q + T++
Sbjct: 391 ISRGIDFQNVACVLNFDLPTTSKSYTHRIGRTGRAGKSGMALSFVIPSDQFGKHKPTSIP 450
Query: 409 FVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS--------- 459
E L + +KPY F++ +V F YR DA R+
Sbjct: 451 SAKHDEAMLSKIIKRQGKLGRE-----VKPYHFDMKQVDAFRYRMSDALRAVTRVAVQEA 505
Query: 460 ----------------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVP 496
+FE+NP +L LRHD L R+Q+HL VPDY++P
Sbjct: 506 RAREIRQELVKSEKLKRHFEENPEELRELRHDGELRAARVQAHLKHVPDYLMP 558
>gi|254582140|ref|XP_002497055.1| ZYRO0D14388p [Zygosaccharomyces rouxii]
gi|238939947|emb|CAR28122.1| ZYRO0D14388p [Zygosaccharomyces rouxii]
Length = 583
Score = 360 bits (924), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 198/521 (38%), Positives = 314/521 (60%), Gaps = 55/521 (10%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNK-DVLVRARTGSGKTGAFAIPMIQKIINLKQTAQ 88
LQA+ + G+L PTLIQ AIPL LQ K D++ +A TGSGKT A+ IP+IQ I+N K++ Q
Sbjct: 30 LQAVKRNGFLHPTLIQSHAIPLALQQKRDIIAKAATGSGKTLAYLIPVIQTILNYKESLQ 89
Query: 89 VQ----ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERP 144
+ +T +VL P+KEL NQ++ ++++T+ CS+D++ +++S + SV LL+E+P
Sbjct: 90 DENDQNQTLGIVLVPTKELANQVYSVLEKMTLYCSKDIRSLNVSSDISNSVLNTLLLEKP 149
Query: 145 DIVVATPARALAHLKAKTLDLK-SSLEIVIIDEADLVFSFGYEDDMKAVLKFLP--KLYQ 201
+I+VATP + + L+ T + L+ ++IDE DLV +FGYE+D+ + ++LP K Q
Sbjct: 150 EIIVATPGKLVTLLETNTEAISLDELKFLVIDEVDLVLTFGYEEDLTKIAQYLPLKKNLQ 209
Query: 202 AILASATLSEDVLSLKHLILRNPVILKLEEPAIA-PVSQLAHYHILAQEDEKATILYTLL 260
L SATL++D+ +LK R P ILK + I+ +LA Y++ E +K + Y +
Sbjct: 210 TFLMSATLNDDIQNLKQQFCRFPAILKFNDDEISRDQKKLAQYYVKTTEFDKFLLCYVIF 269
Query: 261 KLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVI 320
KL L++GKT++FVN +D+ YKLKL LEQF I + +LNSELP +R H V QFN+ L+ ++
Sbjct: 270 KLALIRGKTLVFVNNIDRGYKLKLVLEQFGIKSSILNSELPINSRQHIVDQFNKNLFHIL 329
Query: 321 IASDE--------------KALETPQINSTNNRKR--KRDKESGVSRGIDFQFVSNVINF 364
IA+D+ + + S N K K+++E GVSRG+DF+ VS V+NF
Sbjct: 330 IATDDTDYIKEEEEELAHEEGRDDGNTESQNKSKHGSKKNREYGVSRGVDFKNVSCVLNF 389
Query: 365 DFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEY 424
D P + Y+HR GRTAR GTA+SFV R ++ ++ +++++ +++ +
Sbjct: 390 DLPTTAKSYVHRVGRTARAGKSGTAISFVVPR-KEYGKHKPSMCTTAIKDEKILSRI--- 445
Query: 425 LMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS------------------------- 459
+ + + PY F+ +V+GF YR +D +R+
Sbjct: 446 -IKQQSKLGLEMLPYSFDKKQVEGFRYRMEDGFRAVTQVAVREARIKELKQELLMSDKLK 504
Query: 460 NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPPALK 500
+FE+NP +L++LRHDK L+ R+Q HL VPDY++P L+
Sbjct: 505 RHFEENPQELQSLRHDKELHPARVQQHLKRVPDYLLPEPLR 545
>gi|126303427|ref|XP_001379754.1| PREDICTED: probable ATP-dependent RNA helicase DDX56-like
[Monodelphis domestica]
Length = 495
Score = 359 bits (922), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 212/507 (41%), Positives = 284/507 (56%), Gaps = 108/507 (21%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQAIA+ GW PTLIQE+AIPL L+ KD+L RARTGSGKT A+AIP++Q +++ K T V
Sbjct: 19 LQAIAEQGWARPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPLLQHLLHRKATGPV 78
Query: 90 --QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
Q + LVL P+KEL Q I++LT CSRDV+ VD VS E
Sbjct: 79 VEQAIRGLVLVPTKELARQAQTMIRQLTAYCSRDVRVVD------VSASE---------- 122
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
D F LP++YQA L SA
Sbjct: 123 ------------------------------DFAFQ-----------SHLPRIYQAFLMSA 141
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQ-EDEKATILYTLLKLNLVQ 266
T +EDV +LK L+L NPV LKL+E + QL + ++ + E++K +LY LLKL+L++
Sbjct: 142 TFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLLLYALLKLSLLR 201
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
GK+++FVNT+++ Y+L+L+LEQF I CVLN ELP ++RCH + QFNQG YD +IA+DE+
Sbjct: 202 GKSLLFVNTLERGYRLRLFLEQFSIPACVLNGELPLRSRCHIISQFNQGFYDCVIATDEE 261
Query: 327 ALETP----QINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTAR 382
L P + + +R D ESGV+RGIDF V+ V+NFD P + YIHRAGRTAR
Sbjct: 262 VLGAPFKGKRRGQGSKGERASDTESGVARGIDFHNVTAVLNFDLPPSPEAYIHRAGRTAR 321
Query: 383 GKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFN 442
N GTAL+FV E R Q + ++ E L E F+ PYQF
Sbjct: 322 ANNPGTALTFVLPTE---------------RPQ--LKEIEEALGGESAESMFL--PYQFR 362
Query: 443 LDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKA 477
++E++GF YR +DA RS YFEDNP DL+ LRHD+
Sbjct: 363 MEEIEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQLLRHDRP 422
Query: 478 LYTVRIQSHLADVPDYIVPPALKKLAR 504
L+ ++ HL VPDY+VPP L+ +AR
Sbjct: 423 LHPAVVKPHLGHVPDYLVPPTLRGIAR 449
>gi|296812221|ref|XP_002846448.1| ATP-dependent RNA helicase DBP9 [Arthroderma otae CBS 113480]
gi|238841704|gb|EEQ31366.1| ATP-dependent RNA helicase DBP9 [Arthroderma otae CBS 113480]
Length = 617
Score = 359 bits (922), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 209/558 (37%), Positives = 304/558 (54%), Gaps = 98/558 (17%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+ + +PTL+Q AIPL L KD+L RA+TGSGKT A+ +P++Q+I+ K
Sbjct: 36 LQALKLQKFSKPTLVQAEAIPLALDGKDILARAKTGSGKTAAYLLPILQRILQKKAADPA 95
Query: 90 QET-KALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
+ L+L P++EL Q+H+ + + CS+D++ +++++V +VQ LL + PDIV+
Sbjct: 96 HRSISTLILVPTRELAQQVHRTVTAFSEFCSKDIRSGNLTQKVSDAVQRALLADMPDIVI 155
Query: 149 ATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
+TPARA+ ++ L L ++ V+IDEADLV S+GYE DM+++ K +P Q L SAT
Sbjct: 156 STPARAIVNVNNSALVL-DNISQVVIDEADLVLSYGYEQDMQSLAKAIPHGVQTFLMSAT 214
Query: 209 LSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGK 268
L+ +V +LK L R+P ILKLEE A + ++ + + EDEK + Y + KL LV+GK
Sbjct: 215 LTSEVDTLKGLFCRSPAILKLEE-AEDEGAGISQFAVKCAEDEKFLLTYVIFKLQLVKGK 273
Query: 269 TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL 328
IIFV VD+CY+LKL+LEQF I +C+LNSELPA +R HAV +FN+G+YD+IIA+D++ +
Sbjct: 274 CIIFVGDVDRCYRLKLFLEQFGIKSCILNSELPANSRIHAVQEFNKGVYDIIIAADDQEV 333
Query: 329 ETPQINSTNNRKRKRD----------------------------------------KESG 348
++ S +D K+ G
Sbjct: 334 -IGKVESKKETVESKDGPVEDTATEEAKEELSEPEEVEEKTVLSNKNKKRKKSGKEKDYG 392
Query: 349 VSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLM------- 401
+SRGIDFQ V+ V+NFD P + Y HR GRT R G ALSFV DL
Sbjct: 393 ISRGIDFQDVACVLNFDLPTTAKSYTHRIGRTGRAGKTGMALSFVV--PSDLYGKHKPTI 450
Query: 402 -----NDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDA 456
ND + L+ + R+ + +V KPY F+ +++ F YR DA
Sbjct: 451 FPPAKNDESVLAKIEKRQAKMGREV---------------KPYHFDKKQIEVFRYRMTDA 495
Query: 457 WRS-------------------------NYFEDNPTDLETLRHDKALYTVRIQSHLADVP 491
R+ +FE+NP +L LRHD L +VR+QSHL VP
Sbjct: 496 LRAVTRIAIQEARAKEIRQELVKSEKLKKHFEENPQELRQLRHDDELGSVRVQSHLKHVP 555
Query: 492 DYIVPPALKKLARIEDDG 509
DY++P K ED G
Sbjct: 556 DYLMPAKGKSALTSEDIG 573
>gi|154281927|ref|XP_001541776.1| hypothetical protein HCAG_03874 [Ajellomyces capsulatus NAm1]
gi|160380634|sp|A6R2L6.1|DBP9_AJECN RecName: Full=ATP-dependent RNA helicase DBP9
gi|150411955|gb|EDN07343.1| hypothetical protein HCAG_03874 [Ajellomyces capsulatus NAm1]
Length = 625
Score = 359 bits (922), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 209/545 (38%), Positives = 299/545 (54%), Gaps = 96/545 (17%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+ + + +PT IQ AIPL L KDVL RA+TGSGKT A+ +P++Q I+ K+
Sbjct: 36 LQALTQQKFTKPTPIQAEAIPLALDGKDVLARAKTGSGKTAAYLLPVLQSILQQKRNTPA 95
Query: 90 QET-KALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
++ AL+L P++EL Q+H+ + + V+ V+++++V +VQ LL + PDIVV
Sbjct: 96 HKSISALILVPTRELAEQVHRTAISFSAFSGKHVRSVNLTQKVSDAVQRSLLADLPDIVV 155
Query: 149 ATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
+TPARA+A++ + L L+ L ++IDEADLV S+GYE+DM+++ K +P+ Q L SAT
Sbjct: 156 STPARAVANVNSSALSLER-LTHLVIDEADLVLSYGYEEDMQSLAKAVPRGVQTFLMSAT 214
Query: 209 LSEDVLSLKHLILRNPVILKLEEPA--IAPVSQLAHYHILAQEDEKATILYTLLKLNLVQ 266
+ +V +LK L RNPV+LKLEE A +SQ EDEK + Y + KL LV+
Sbjct: 215 FTSEVDTLKGLFCRNPVVLKLEEKEDEGAGISQFVVRR--CAEDEKFLLTYVIFKLQLVK 272
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
GK IIFV VD+CY+LKL+LEQF I +CVLNSELP +R H V +FN+G+YD+IIA D++
Sbjct: 273 GKCIIFVGDVDRCYRLKLFLEQFGIRSCVLNSELPVNSRIHVVQEFNKGVYDIIIAVDDQ 332
Query: 327 AL------------------------ETPQINSTNN----------------RKRKRDKE 346
+ + Q + N+ +K ++K+
Sbjct: 333 EVLGELRKNSKKQPRKSDQCSRDSEYDGAQTSRNNDQYSSEDDAETQPSKRPKKSAKEKD 392
Query: 347 SGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQ-------- 398
G+SRGIDFQ V+ V+NFD P + Y HR GRT R G ALSFV +Q
Sbjct: 393 YGISRGIDFQNVACVLNFDLPTTSKSYTHRIGRTGRAGKTGMALSFVIPSDQFGKHKPTS 452
Query: 399 --DLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDA 456
+D LS + R+ L +V KPY F++ +V F YR DA
Sbjct: 453 IPSAKHDEAMLSKIIKRQDKLGREV---------------KPYHFDMKQVDAFRYRMSDA 497
Query: 457 WRS-------------------------NYFEDNPTDLETLRHDKALYTVRIQSHLADVP 491
R+ +FE+NP +L LRHD L R+Q+HL VP
Sbjct: 498 LRAVTRVAVQEARAREIRQELVKSEKLKRHFEENPEELRQLRHDGELRAARVQAHLKHVP 557
Query: 492 DYIVP 496
DY++P
Sbjct: 558 DYLMP 562
>gi|345806339|ref|XP_850575.2| PREDICTED: probable ATP-dependent RNA helicase DDX56 [Canis lupus
familiaris]
Length = 521
Score = 359 bits (922), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 194/445 (43%), Positives = 275/445 (61%), Gaps = 49/445 (11%)
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
Q + LVL P+KEL Q IQ+L C+RD++ D+S D + Q +L+E+PDIVV
Sbjct: 57 QAVRGLVLVPTKELARQARSMIQQLASYCARDIRVADVSAAEDSASQRAVLMEKPDIVVG 116
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP+R L HL+ +L L+ SLE++++DEADL+FSFG+E+++K +L LP++YQA L SAT
Sbjct: 117 TPSRILNHLQQDSLVLRDSLELLVLDEADLLFSFGFEEELKGLLCHLPRIYQAFLMSATF 176
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQ-EDEKATILYTLLKLNLVQGK 268
+EDV +LK L+L NPV LKL+E + QL + ++ + E++K +LY LLKL+L++GK
Sbjct: 177 NEDVQALKELVLHNPVTLKLQESQLPGPDQLRQFQVVCETEEDKFLLLYALLKLSLIRGK 236
Query: 269 TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL 328
++FVNT+++ Y+L+L+LEQF I CVLN ELP +RCH + QFNQG YD +IA+D + L
Sbjct: 237 CLLFVNTLERSYRLRLFLEQFSIPACVLNGELPLCSRCHIISQFNQGFYDCVIATDAEVL 296
Query: 329 ET----PQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384
+ + + R D E+GV+RGIDF VS+V+NFD P + YIHRAGRTAR
Sbjct: 297 GSLVKGRRRGRGSRGTRASDPEAGVARGIDFHHVSSVLNFDLPPTPEAYIHRAGRTARAN 356
Query: 385 NQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLD 444
N G L+FV EQ + D E L++ + ++ PYQF ++
Sbjct: 357 NPGMVLTFVLPTEQSHL------------------DTIEELLSGENRAPVLL-PYQFRME 397
Query: 445 EVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKALY 479
E++GF YR +DA RS YFEDNP DL+ LRHD L+
Sbjct: 398 EIEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSERLKTYFEDNPRDLQLLRHDLPLH 457
Query: 480 TVRIQSHLADVPDYIVPPALKKLAR 504
++ HL VPDY+VPPAL+ L R
Sbjct: 458 PAIVKPHLGHVPDYLVPPALRGLVR 482
>gi|255718829|ref|XP_002555695.1| KLTH0G15224p [Lachancea thermotolerans]
gi|238937079|emb|CAR25258.1| KLTH0G15224p [Lachancea thermotolerans CBS 6340]
Length = 596
Score = 359 bits (921), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 212/553 (38%), Positives = 322/553 (58%), Gaps = 71/553 (12%)
Query: 15 VYFELPFTFTLFCIP---LQAIAKLGWLEPTLIQERAIPLIL-QNKDVLVRARTGSGKTG 70
Y + TF F + LQ+I G+ PTLIQ AIPL L Q +DV+ +A TGSGKT
Sbjct: 9 AYIDDSVTFESFQLDPRLLQSIKYNGYDRPTLIQSSAIPLALEQRRDVIAKAATGSGKTL 68
Query: 71 AFAIPMIQKIINLKQT----AQVQETKAL--VLSPSKELCNQLHKNIQELTMKCSRDVKC 124
A+ IP+IQ I+N KQ+ +Q QE K L +L P++EL Q+ + +L + CS+DV
Sbjct: 69 AYLIPVIQTILNYKQSEQNNSQTQEPKTLGIILVPTRELAQQVQSVLSKLVLYCSKDVHS 128
Query: 125 VDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLK-SSLEIVIIDEADLVFSF 183
+++S Q+ SV LL++RP+++++TP++ L L+ K+ L L+ ++IDE DLV +F
Sbjct: 129 LNLSSQLSESVLTSLLLDRPEVLISTPSKLLNVLETKSSALSLEDLKFLVIDEVDLVLTF 188
Query: 184 GYEDDMKAVLKFLP--KLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAI-APVSQL 240
GY++D+ + +LP K Q L SATL+ED+ LK R+P ILKL E I S+L
Sbjct: 189 GYQEDLNQISSYLPLKKNLQTFLMSATLNEDIQDLKMRFCRSPAILKLNEEEINKDQSKL 248
Query: 241 AHYHILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSEL 300
Y++ E +K + Y + KL L++GKT+IFVN +D+ Y+LKL LEQF I +C+LNSEL
Sbjct: 249 LQYYVKVSEFDKFLLCYVIFKLGLLKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSEL 308
Query: 301 PAKARCHAVYQFNQGLYDVIIAS-----------------DEKALE-TPQINSTNNRKR- 341
PA +R H V +FN+ +Y ++IA+ DE A E T NS+ + +
Sbjct: 309 PANSRQHIVEEFNKNVYQLLIATDDTEYIKEEEDGQNLSDDEGAGENTADANSSASTSKK 368
Query: 342 --------KRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFV 393
K+DK+ GVSRG+DFQ V+ V+NFD P + Y+HR GRTAR G A+SFV
Sbjct: 369 EKNKGINLKKDKDYGVSRGVDFQNVACVLNFDLPTTAKSYVHRIGRTARAGKSGVAISFV 428
Query: 394 SLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRA 453
+ ++ ++ + R++ +++ + + + F I PY F++ +V+GF YR
Sbjct: 429 -VPLKEFAKHKPSMCPTAKRDEKILSRI----IKQQSKLGFEILPYSFDIKQVEGFRYRM 483
Query: 454 KDAWRS-------------------------NYFEDNPTDLETLRHDKALYTVRIQSHLA 488
+D +R+ +FE+NP DL++LRHDK L+ R+Q HL
Sbjct: 484 EDGFRAVTQVAVREARVKELKQELLTSSKLKRHFEENPQDLQSLRHDKELHPARVQQHLK 543
Query: 489 DVPDYIVPPALKK 501
VPDY++P A ++
Sbjct: 544 RVPDYLLPEAARQ 556
>gi|315051032|ref|XP_003174890.1| ATP-dependent RNA helicase DBP9 [Arthroderma gypseum CBS 118893]
gi|311340205|gb|EFQ99407.1| ATP-dependent RNA helicase DBP9 [Arthroderma gypseum CBS 118893]
Length = 616
Score = 358 bits (920), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 208/554 (37%), Positives = 304/554 (54%), Gaps = 91/554 (16%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+ + +PTL+Q AIPL L KD+L RA+TGSGKT A+ IP++QKI+ K
Sbjct: 36 LQALTSQKFSKPTLVQAEAIPLALNGKDILARAKTGSGKTAAYLIPILQKILQKKAAHPA 95
Query: 90 QET-KALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
++ L+L P++EL Q+HK + + CS+ ++ +++++V +VQ LL + PDIV+
Sbjct: 96 HKSISTLILVPTRELAQQVHKTVTAFSEFCSKGIRSGNLTQKVSDAVQRALLADLPDIVI 155
Query: 149 ATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
+TPARA+ ++ L L + V+IDEADLV S+GYE DM+++ K +P+ Q L SAT
Sbjct: 156 STPARAVVNVNNSALVL-DDISQVVIDEADLVLSYGYEQDMQSLAKAIPRGVQTFLMSAT 214
Query: 209 LSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGK 268
L+ +V +LK L R+P ILKLEE A + ++ + + EDEK + Y + KL LV+GK
Sbjct: 215 LTSEVDTLKGLFCRSPAILKLEE-AEDEGAGISQFAVKCAEDEKFLLTYVIFKLQLVKGK 273
Query: 269 TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL 328
IIFV VD+CY+LKL+LEQF I +C+LNSELPA +R HAV +FN+G+YD+IIA+D++ +
Sbjct: 274 CIIFVGDVDRCYRLKLFLEQFGIKSCILNSELPANSRIHAVQEFNKGVYDIIIAADDQEV 333
Query: 329 --------------------------------------ETPQINSTNNRKRKRDKESGVS 350
P + +K ++K+ G+S
Sbjct: 334 IGKVESKKEPVGSEDATVTDAVAEESKDLSDPEEVEEKPAPSNKNKKRKKSGKEKDYGIS 393
Query: 351 RGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLRE----------QDL 400
RGIDFQ V+ V+NFD P + Y HR GRT R G ALSFV E
Sbjct: 394 RGIDFQDVACVLNFDLPTTAKSYTHRIGRTGRAGKTGMALSFVVPSELYGKHKPTIFPPA 453
Query: 401 MNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS- 459
ND + L+ + R+ + +V KPY F+ +++ F YR DA R+
Sbjct: 454 KNDESVLAKIEKRQAKMGREV---------------KPYHFDKKQIEVFRYRMTDALRAV 498
Query: 460 ------------------------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIV 495
+FE+NP +L LRHD+ L +VR+QS L VP+Y++
Sbjct: 499 TRIAIQEARAKEIRQELVKSEKLKRHFEENPQELRELRHDQELGSVRVQSQLKSVPEYLM 558
Query: 496 PPALKKLARIEDDG 509
P K ED G
Sbjct: 559 PTKGKSSLTSEDIG 572
>gi|327349068|gb|EGE77925.1| ATP-dependent RNA helicase DBP9 [Ajellomyces dermatitidis ATCC
18188]
Length = 607
Score = 358 bits (919), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 201/518 (38%), Positives = 292/518 (56%), Gaps = 59/518 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+ + + +PTLIQ AIPL L KDVL RA+TGSGKT A+ +P++Q I+ K
Sbjct: 36 LQALTQQKFTKPTLIQAEAIPLALDGKDVLARAKTGSGKTAAYLLPILQSILQKKTNDPT 95
Query: 90 QET-KALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
+ L+L P++EL Q+HK + + +D++ +++++V +VQ +L + PDIV+
Sbjct: 96 HKAISTLILVPTRELAEQVHKTVTSFSAFAGKDIRSTNLTQKVSDAVQRSILADLPDIVI 155
Query: 149 ATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
+TPARA+ ++ + L L+ L ++IDEADLV S+GYE+DM+++ K +P+ QA L SAT
Sbjct: 156 STPARAVVNINSSALTLQH-LTHLVIDEADLVLSYGYEEDMQSLAKAVPRGVQAFLMSAT 214
Query: 209 LSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGK 268
+ +V +LK L RNPV+LKLEE ++ + + EDEK + Y + KL LV+GK
Sbjct: 215 FTSEVDALKGLFCRNPVVLKLEEKEDEGAG-ISQFVVRCAEDEKFLLTYVIFKLQLVKGK 273
Query: 269 TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL 328
IIFV VD+CY+LKL+LEQF I +CVLNSELP +R H V +FN+G+ SD+ +
Sbjct: 274 CIIFVGDVDRCYRLKLFLEQFGIRSCVLNSELPVNSRIHVVQEFNKGVKPS-RKSDQSSK 332
Query: 329 ETPQIN-------STNN------------------RKRKRDKESGVSRGIDFQFVSNVIN 363
+ Q N +TNN +K ++K+ G+SRGIDFQ V+ V+N
Sbjct: 333 DPEQENDDGSGVKTTNNYLQDSSEDETKARPSKRPKKSAKEKDYGISRGIDFQDVACVLN 392
Query: 364 FDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNE 423
FD P + + Y HR GRT R G ALSFV +Q + T+ S E L +
Sbjct: 393 FDLPTNSKSYTHRIGRTGRAGKTGMALSFVVPSDQFGKHKPTSFSSAKHDEAVLGKIIKR 452
Query: 424 YLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS------------------------ 459
+KPY F + +V F YR DA R+
Sbjct: 453 QGKLGRE-----VKPYHFEMKQVDAFRYRMSDALRAVTRVAVQEARAREIRQELVKSEKL 507
Query: 460 -NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVP 496
+FE+NP +L LRHD L R+Q+HL VPDY++P
Sbjct: 508 KRHFEENPEELRQLRHDGELRAARVQAHLKHVPDYLMP 545
>gi|346971615|gb|EGY15067.1| ATP-dependent RNA helicase dbp9 [Verticillium dahliae VdLs.17]
Length = 609
Score = 358 bits (919), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 198/526 (37%), Positives = 300/526 (57%), Gaps = 63/526 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIIN---LKQT 86
LQ +A+L W PT IQ +A+PL L+ +D+L ++ TG+GKT A+ +P+++K++ +
Sbjct: 38 LQGVAQLNWHNPTDIQAKAVPLALEGRDILAKSGTGTGKTAAYVLPVLEKVLQRKEKEAK 97
Query: 87 AQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDI 146
T L+L P++EL +Q+H++I+ L C++D++ V ++++V +VQ LL PDI
Sbjct: 98 GAAAATSVLMLVPTRELADQVHRSIESLAAFCAKDIQAVKLTDKVSTTVQRALLSANPDI 157
Query: 147 VVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
V++TPARA ++ + L L ++L +++DEADLV S+GY++D++ V + LPK Q IL S
Sbjct: 158 VISTPARAWDNVSSSALSL-ANLTHLVLDEADLVLSYGYKEDLQNVARSLPKGVQTILMS 216
Query: 207 ATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQ 266
ATL+ +V ++K L RNP +L LE+P A + + + EDEK ++Y + KL L+Q
Sbjct: 217 ATLTPEVDTVKGLFCRNPALLDLEQPE-AEGDGITQFVVKCAEDEKFLLIYVIFKLKLIQ 275
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
GK ++F + VD+ YKLKLY EQF I +C+LN+ELP +R H V +FN+G+YD++IASD+
Sbjct: 276 GKALVFCHDVDRSYKLKLYFEQFGIRSCILNAELPVNSRLHVVDEFNKGVYDILIASDDN 335
Query: 327 AL------------------------ETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVI 362
+ R ++DKE GVSRGIDF+ V+ VI
Sbjct: 336 EVVGDEGQEDEGEEETTEEPKKEAKKSKKTQQQQQQRASRKDKEYGVSRGIDFKNVAAVI 395
Query: 363 NFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQD--LMND 420
NFD P + Y HR GRTAR +G ALSFV + G S V E D ++
Sbjct: 396 NFDLPTSAKSYTHRIGRTARAGQRGMALSFVIPAQH---YRGHPPSSVESAEHDEKILAR 452
Query: 421 VNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS--------------------- 459
+ + E +KPY F++ +V F+YR DA R+
Sbjct: 453 IEKQQAKKGKE----VKPYHFDMAQVSAFKYRMDDALRAVTRVAVREARTRELRQELIKS 508
Query: 460 ----NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPPALKK 501
+FE+NP +L LRHD L R+Q HL VPDY++P KK
Sbjct: 509 DKLRRHFEENPQELAHLRHDGELRAARMQPHLRHVPDYLLPADGKK 554
>gi|255933215|ref|XP_002558078.1| Pc12g12670 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211582697|emb|CAP80894.1| Pc12g12670 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 613
Score = 357 bits (917), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 208/548 (37%), Positives = 303/548 (55%), Gaps = 79/548 (14%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQT-AQV 89
QA+ K + +PTL+Q +AIPL L+ KD+L RA+TGSGKT A+ +P++Q I+ K
Sbjct: 36 QALIKEKFTKPTLVQSKAIPLALEGKDILARAKTGSGKTAAYVLPILQAILQQKTADPSS 95
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ T AL+L P++EL Q+ K I C +D++ V+++++V VQ +L + PDIVV+
Sbjct: 96 KATTALILVPTRELAEQVQKVITSFASFCGKDIRSVNLTQKVSDEVQRSMLADFPDIVVS 155
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R +++ L L +VI DEADLV S+GY++++ A+ K +P+ Q L SATL
Sbjct: 156 TPTRVYSNVNNSALSLDKVTHLVI-DEADLVLSYGYDEEINALSKAIPRGAQTFLMSATL 214
Query: 210 SEDVLSLKHLILRNPVILKLEEP--AIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
+ +V +LK L RNPVILKLEE A VSQ + + EDEK + Y + KL L++G
Sbjct: 215 TSEVDTLKDLYCRNPVILKLEEKEEKGAGVSQ---FVVRCAEDEKFLLTYVIFKLQLIKG 271
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
K IIFV VD+CY++KL+LEQF + +CVLNSELP +R H V +FN+G+YD+I+A+DE+
Sbjct: 272 KVIIFVADVDRCYRVKLFLEQFGLKSCVLNSELPINSRIHVVEEFNKGVYDIIVAADEQE 331
Query: 328 L------------------------------------ETPQINSTNNRKRK----RDKES 347
+ E+ + +KR+ ++K+
Sbjct: 332 VMGVTKSKKSREDKEAEAEEEEAKEEMGSSEDEEAVDESGKGKKPETKKRRKMTSKEKDY 391
Query: 348 GVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTAL 407
++RGIDFQ V+ V+NFD P + Y HR GRT R G ALSFV +Q + T++
Sbjct: 392 SIARGIDFQNVACVLNFDLPTSSKSYTHRIGRTGRAGKAGMALSFVIPTDQHGKHKPTSI 451
Query: 408 SFVSLREQDLMNDVNEYLMTNL-HEDDFIIKPYQFNLDEVKGFEYRAKDAWRS------- 459
E L + + T L HE +KPY F + +V F YR DA RS
Sbjct: 452 PSTKHDETMLAKIIKK--QTKLGHE----VKPYHFEMSQVDAFRYRMTDALRSVTRLAVQ 505
Query: 460 ------------------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPPALKK 501
+FE+NP +L LRHD L R+Q+HL VPDY++P +K
Sbjct: 506 EARGREIRQELIKSEKLKRHFEENPEELRQLRHDGELRAARVQAHLKHVPDYLMPAKGRK 565
Query: 502 LARIEDDG 509
E+ G
Sbjct: 566 GLSKENVG 573
>gi|358382914|gb|EHK20584.1| hypothetical protein TRIVIDRAFT_90268 [Trichoderma virens Gv29-8]
Length = 616
Score = 356 bits (914), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 204/516 (39%), Positives = 293/516 (56%), Gaps = 56/516 (10%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
+QA+A+ +L+PTL+Q +AIPL L KDVL +A+TGSGKT A+ +P++ I+ K
Sbjct: 53 VQAVAQQKFLKPTLVQRKAIPLALDGKDVLCKAKTGSGKTAAYVLPVLAGILKKKSVDST 112
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T AL+L P++EL +Q+ K+I+ + C++DV+ V +++++ +VQ LL PDIV++
Sbjct: 113 AATMALILVPTRELADQVFKSIELFSAFCAKDVRAVKLTDKLTDAVQRSLLSTCPDIVIS 172
Query: 150 TPARALAHLKAKTLDLK-SSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
TPARA ++ + L L +++DEADL+ S+GY +D++++ +PK Q I+ SAT
Sbjct: 173 TPARAWHNVNGNSSALSLDKLSYLVLDEADLLLSYGYSEDLESLSWSIPKGIQTIMMSAT 232
Query: 209 LSEDVLSLKHLILRN--PVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQ 266
L+ +V SLK + R+ P +L LEEP A + EDEK ++Y + KL LV+
Sbjct: 233 LTTEVDSLKKIFYRDQQPTLLDLEEPD-AEGEGVTQLVTKCGEDEKFLLIYVIFKLQLVK 291
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
GK IIFV +D+CY+LKLY EQF I +C+LNSELP +R H V +FN+ +YD+IIASDEK
Sbjct: 292 GKCIIFVADIDRCYRLKLYFEQFGIRSCILNSELPVNSRIHVVEEFNRNVYDIIIASDEK 351
Query: 327 AL--------------------ETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDF 366
+ + + K D E GVSRGIDF+ V+ VINFD
Sbjct: 352 EVLGNEEKAEEEQEEEENDGESKQESRPKKKRKAAKGDVEYGVSRGIDFKNVAAVINFDL 411
Query: 367 PLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLR-EQDLMNDVNEYL 425
P Y HR GRTAR G ALSFV +DL S S ++ ++ + +
Sbjct: 412 PTSASSYTHRIGRTARAGRTGMALSFVV--PKDLYRKHIHTSIASSENDEKILARITKQQ 469
Query: 426 MTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS-------------------------N 460
E IKPY FN D+V F YR DA R+
Sbjct: 470 AKKGKE----IKPYNFNKDQVDAFRYRMNDALRAVTKVAIREARTRELRQELLKSEKLKR 525
Query: 461 YFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVP 496
YFE+NP+++ LRHD L T R Q+HL VPDY++P
Sbjct: 526 YFEENPSEMNHLRHDGELRTARQQAHLKHVPDYLLP 561
>gi|320587772|gb|EFX00247.1| ATP dependent RNA helicase [Grosmannia clavigera kw1407]
Length = 613
Score = 356 bits (914), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 208/525 (39%), Positives = 301/525 (57%), Gaps = 70/525 (13%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
+QA+A+ + +PTL+Q +AIPL L +D+L +A+TGSGKT A+ +P++Q I+ KQT
Sbjct: 54 VQAVARQSFEKPTLVQRKAIPLALNGQDLLAKAKTGSGKTAAYLLPVLQVILKRKQTDTT 113
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T AL+L+P++EL +Q+ K+I E + C++D+ V ++++V +V LL PDIVV+
Sbjct: 114 AFTSALILAPTRELADQVFKSIAEFSSFCAKDITAVKLTDKVSDAVLRSLLSNMPDIVVS 173
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP+RA + + + L L +++DEADLV S+GY +D++ + LPK Q IL SATL
Sbjct: 174 TPSRAWHAVSSSFMTL-DKLTNLVLDEADLVLSYGYSEDLEQISGSLPKGIQTILMSATL 232
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+ +V +LK ++ RNP +L LEE A + Y + EDEK + Y + KL LV GK
Sbjct: 233 TTEVDTLKGMLCRNPTLLNLEERD-AEGEGVTQYVVKCAEDEKFLLAYIIFKLKLVTGKC 291
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL- 328
++FV+ VD+CY+LKL+ EQF I +C+LNSELP +R + + +FN+ +YD+IIASDE L
Sbjct: 292 LVFVSDVDRCYRLKLFFEQFGIRSCILNSELPVNSRINCIEEFNRNMYDIIIASDEHELL 351
Query: 329 ---ETPQINSTNNRK-------------RKRDKESGVSRGIDFQFVSNVINFDFPLDIQC 372
E +T K KRD+E GVSRGIDF+ V VINFD P +
Sbjct: 352 GNEEQADEQATKEGKGAEAQPKKKRKTAAKRDREFGVSRGIDFKNVRAVINFDLPTSSKS 411
Query: 373 YIHRAGRTARGKNQGTALSFV---SLREQDL-------MNDGTALSFVSLREQDLMNDVN 422
Y HR GRTAR G ALSFV +L + + ND L ++ ++ L +V
Sbjct: 412 YTHRIGRTARAGQTGMALSFVVPSALYRKHIPTTVESAENDEKVLGRITRQQAKLGKEV- 470
Query: 423 EYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS----------------------- 459
KPY F++ +V+ F YR DA RS
Sbjct: 471 --------------KPYDFDMKQVEAFRYRMNDALRSVTKVAVREARTREIRQELLKSEK 516
Query: 460 --NYFEDNPTDLETL-RHDKALYTVRIQSHLADVPDYIVPPALKK 501
+FE+NP +L+ L RHD L T+R Q HL VPDY++P KK
Sbjct: 517 LKRHFEENPGELQHLARHDHELRTLRAQPHLKHVPDYLLPRDGKK 561
>gi|303315147|ref|XP_003067581.1| ATP-dependent RNA helicase DBP9, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|240107251|gb|EER25436.1| ATP-dependent RNA helicase DBP9, putative [Coccidioides posadasii
C735 delta SOWgp]
Length = 612
Score = 356 bits (914), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 203/536 (37%), Positives = 298/536 (55%), Gaps = 86/536 (16%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+ K + +PTL+Q AIPL+L KDVL RA+TGSGKT A+ +P++Q I+ K
Sbjct: 35 LQALTKQKFTKPTLVQAEAIPLVLSGKDVLARAKTGSGKTAAYLLPILQSILQKKIANPT 94
Query: 90 QET-KALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
Q++ AL+L P++EL Q+ + + C +D++ +++++V +VQ +L + PDI++
Sbjct: 95 QKSISALILVPTRELAEQVQNAVVSFSSFCGKDIRSANLTQKVSDAVQRAILADLPDIII 154
Query: 149 ATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
+TPARA+ + + +L L + L ++IDEADLV S+GYE DM+ + K +P+ Q +L SAT
Sbjct: 155 STPARAIINTNSSSLSL-NDLTHLVIDEADLVLSYGYEQDMQNLAKAIPRGVQTLLMSAT 213
Query: 209 LSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGK 268
L+ +V +LK L R+PVILKLEE A + +A + + EDEK + Y + KL LV+GK
Sbjct: 214 LTSEVDALKGLFCRSPVILKLEE-AEDEGAGIAQFAVKCAEDEKFLLTYVIFKLQLVKGK 272
Query: 269 TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE--- 325
IIFV +D+ Y+LKL+LEQF I +CVLNSELP +R H V +FN+G+YD+IIA+D+
Sbjct: 273 CIIFVGDIDRSYRLKLFLEQFGIKSCVLNSELPVNSRIHVVQEFNKGVYDIIIAADDQEV 332
Query: 326 ------KALETP-QINSTNNRKRKRDK-----------------------ESGVSRGIDF 355
K +TP Q N N + + +K + G+SRGIDF
Sbjct: 333 IGEIPKKGSKTPEQSNGENGDEPEEEKGFSDEDEVEPPPSKKRKKSTKEKDYGISRGIDF 392
Query: 356 QFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLRE----------QDLMNDGT 405
Q V+ V+NFD P + Y HR GRT R G ALS + E ND
Sbjct: 393 QDVACVLNFDLPTTAKSYTHRIGRTGRAGKTGMALSLIVPSELYGRHKPTSFPTTKNDEA 452
Query: 406 ALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS------ 459
L+ + R+ L +V KPY F+ ++ F YR DA R+
Sbjct: 453 VLAKIIKRQAKLGREV---------------KPYNFDTKQIDAFRYRMTDALRAVTRVAV 497
Query: 460 -------------------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVP 496
+FE+NP +L LRHD L R+Q+HL VP+Y++P
Sbjct: 498 QEARTKEIKQELLNSEKLKRHFEENPEELRQLRHDGELRPTRVQAHLKHVPEYLMP 553
>gi|442570098|sp|Q1DWF4.2|DBP9_COCIM RecName: Full=ATP-dependent RNA helicase DBP9
gi|392868756|gb|EAS34544.2| ATP-dependent RNA helicase DBP9 [Coccidioides immitis RS]
Length = 612
Score = 356 bits (914), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 203/536 (37%), Positives = 298/536 (55%), Gaps = 86/536 (16%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+ K + +PTL+Q AIPL+L KDVL RA+TGSGKT A+ +P++Q I+ K
Sbjct: 35 LQALTKQKFTKPTLVQAEAIPLVLSGKDVLARAKTGSGKTAAYLLPILQSILQKKIANPT 94
Query: 90 QET-KALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
Q++ AL+L P++EL Q+ + + C +D++ +++++V +VQ +L + PDI++
Sbjct: 95 QKSISALILVPTRELAEQVQNAVVSFSSFCGKDIRSANLTQKVSDAVQRAILADLPDIII 154
Query: 149 ATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
+TPARA+ + + +L L + L ++IDEADLV S+GYE DM+ + K +P+ Q +L SAT
Sbjct: 155 STPARAIINTNSSSLSL-NDLTHLVIDEADLVLSYGYEQDMQNLAKAIPRGVQTLLMSAT 213
Query: 209 LSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGK 268
L+ +V +LK L R+PVILKLEE A + +A + + EDEK + Y + KL LV+GK
Sbjct: 214 LTSEVDALKGLFCRSPVILKLEE-AEDEGAGIAQFAVKCAEDEKFLLTYVIFKLQLVKGK 272
Query: 269 TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE--- 325
IIFV +D+ Y+LKL+LEQF I +CVLNSELP +R H V +FN+G+YD+IIA+D+
Sbjct: 273 CIIFVGDIDRSYRLKLFLEQFGIKSCVLNSELPVNSRIHVVQEFNKGVYDIIIAADDQEV 332
Query: 326 ------KALETP-QINSTNNRKRKRDK-----------------------ESGVSRGIDF 355
K +TP Q N N + + +K + G+SRGIDF
Sbjct: 333 IGEIPKKGSKTPEQSNGENGDEPEEEKGFSDEDEVEPPPSKKRKKSTKEKDYGISRGIDF 392
Query: 356 QFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLRE----------QDLMNDGT 405
Q V+ V+NFD P + Y HR GRT R G ALS + E ND
Sbjct: 393 QDVACVLNFDLPTTAKSYTHRIGRTGRAGKTGMALSLIVPSELYGRHKPTSFPTAKNDEA 452
Query: 406 ALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS------ 459
L+ + R+ L +V KPY F+ ++ F YR DA R+
Sbjct: 453 VLAKIIKRQAKLGREV---------------KPYNFDTKQIDAFRYRMTDALRAVTRVAV 497
Query: 460 -------------------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVP 496
+FE+NP +L LRHD L R+Q+HL VP+Y++P
Sbjct: 498 QEARTKEIKQELLNSEKLKRHFEENPEELRQLRHDGELRPTRVQAHLKHVPEYLMP 553
>gi|340939028|gb|EGS19650.1| hypothetical protein CTHT_0041290 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 610
Score = 356 bits (913), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 202/520 (38%), Positives = 298/520 (57%), Gaps = 54/520 (10%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
+QA+AK + +PTL+Q +AIPL L+ +DVL +A+TGSGKT A+ +P++ I+ K T
Sbjct: 49 VQAVAKQNFEKPTLVQRKAIPLALKGQDVLCKAKTGSGKTAAYLLPILTSILKRKATDPT 108
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T L+L P++EL +Q+ K ++E + C++D+ ++E V +VQ LL PD+VV+
Sbjct: 109 PFTAGLILVPTRELADQVFKAVEEFSAFCAKDIHAAKLTENVSDAVQRSLLANVPDVVVS 168
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TPARA + + L L + L+ +++DEADLV S+GY++DM+ + + LPK Q I+ SATL
Sbjct: 169 TPARAWHSVNSSALSL-AKLQFLVLDEADLVLSYGYDEDMENLSRSLPKGVQTIMMSATL 227
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
S ++ +LK + RNP IL L+E A +L +++ E++K I Y + KL L++G
Sbjct: 228 SPELDALKEIFCRNPTILDLKEEFGAEDEKLTQFYVKCGEEDKWLIAYLIFKLQLIKGPC 287
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK--- 326
+IFV +D+ Y+LKL+ EQF I +CVLNSELP R + +FN+G+YD+IIASDE+
Sbjct: 288 LIFVADIDRSYRLKLFFEQFSIRSCVLNSELPINTRIKIIEEFNKGIYDIIIASDERPEA 347
Query: 327 ----ALETPQINSTNNRKRK---------------RDKESGVSRGIDFQFVSNVINFDFP 367
A E + N K K +D+E GVSRGIDF+ V+ VINFD P
Sbjct: 348 FGEEAAEEGEEEKEKNSKSKDGQENQKSKKKRKYQKDEEYGVSRGIDFKNVAAVINFDMP 407
Query: 368 LDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMT 427
Y HR GRTAR G ALSFV ++Q + T + E+ L + +
Sbjct: 408 TSASSYTHRIGRTARAGRAGIALSFVIPKDQFGKHKPTMVKSCEKDEKVLAKIIRQQAKL 467
Query: 428 NLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS-------------------------NYF 462
++PY FN +++ F YR DA R+ YF
Sbjct: 468 GRK-----LEPYNFNKQQMEAFRYRMTDALRAVTRAAIREARTRELRQELLRSEALKRYF 522
Query: 463 EDNPTDLETLRHDKAL-YTVRIQSHLADVPDYIVPPALKK 501
E+NPT+L+ LRHD L +R Q+HL VPDY++P KK
Sbjct: 523 EENPTELQHLRHDGELGKGMRHQAHLKHVPDYLLPKEGKK 562
>gi|367005897|ref|XP_003687680.1| hypothetical protein TPHA_0K01120 [Tetrapisispora phaffii CBS 4417]
gi|357525985|emb|CCE65246.1| hypothetical protein TPHA_0K01120 [Tetrapisispora phaffii CBS 4417]
Length = 604
Score = 355 bits (912), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 214/581 (36%), Positives = 329/581 (56%), Gaps = 85/581 (14%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNK-DVLVRARTGSGKTGAFAIPMIQKIINLKQT-- 86
LQAI + G+ PTLIQ AIPL LQ K D++ +A TGSGKT A+ IP+IQ I++ +Q
Sbjct: 29 LQAIKRNGYKNPTLIQATAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDYQQNKG 88
Query: 87 ----AQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVE 142
+ T ++L P++EL Q+ + + ++ + CS+D++ ++I+ + +V LL+E
Sbjct: 89 NDVDSNSSATLGIILVPTRELAQQVTEVLDKMILYCSKDIRSLNIAGDISPAVLTSLLLE 148
Query: 143 RPDIVVATPARALAHLKAKTLDLK-SSLEIVIIDEADLVFSFGYEDDMKAVLKFLP--KL 199
+P+IVV+TP+R L L+ L L+ ++IDE DLV +FGY++D+ + +FLP K
Sbjct: 149 KPEIVVSTPSRLLGLLETNVDSLSLDDLKFLVIDEVDLVLTFGYKEDLTKISQFLPIKKN 208
Query: 200 YQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAP-VSQLAHYHILAQEDEKATILYT 258
Q L SATL++D+ LK R+P I+K + I ++L Y++ E +K + Y
Sbjct: 209 LQTFLMSATLNDDIQELKKDFCRSPAIIKFNDDEITKDQTKLIQYYVKTSEFDKFLLCYV 268
Query: 259 LLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYD 318
+ KL L++GKT+IFVN +D+ Y+LKL LEQF I C+LNSELPA +R H V QFN+ +Y
Sbjct: 269 IFKLGLIKGKTLIFVNNIDRGYRLKLVLEQFGIKACILNSELPANSRHHIVDQFNKNVYR 328
Query: 319 VIIASD-------EKALETPQINST----------------------NNRKR----KRDK 345
++IA+D E E Q++ T NN+K+ ++DK
Sbjct: 329 LLIATDDTEYIKEEDEQEEIQVDETKKDSSEETTENKEEEPNTSDNKNNKKKTITIQKDK 388
Query: 346 ESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSF-VSLREQDLMNDG 404
E GVSRG+DFQ V+ V+NFD P + Y+HR GRTAR GTA+SF V L+E +
Sbjct: 389 EYGVSRGVDFQNVACVLNFDLPTTAKSYVHRVGRTARAGKSGTAISFVVPLKE--VGKHK 446
Query: 405 TALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS----- 459
++S S R++ +++ + M + ++PY F+ +V+GF YR +D +R+
Sbjct: 447 PSMSQTSKRDEKILSRI----MKQQGKLGLELQPYSFDSKQVEGFRYRLEDGFRAVTQVA 502
Query: 460 --------------------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPPAL 499
+FE+NP +L++LRHDK LY RIQ HL VP+Y++P A
Sbjct: 503 IREARIKELKEELLASEKLKRHFEENPQELKSLRHDKELYPSRIQQHLKRVPEYLLPEAA 562
Query: 500 KKLARIEDDGDEDVRAEPITDEEYNKQYEEYKKRSKENERN 540
+K GD+ V P + + N+ K K N+R
Sbjct: 563 RK-------GDKKVGFVPFHNPKKNRH--RVSKGKKNNKRG 594
>gi|367016957|ref|XP_003682977.1| hypothetical protein TDEL_0G03990 [Torulaspora delbrueckii]
gi|359750640|emb|CCE93766.1| hypothetical protein TDEL_0G03990 [Torulaspora delbrueckii]
Length = 588
Score = 355 bits (912), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 200/527 (37%), Positives = 317/527 (60%), Gaps = 60/527 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNK-DVLVRARTGSGKTGAFAIPMIQKIINLKQTAQ 88
LQAI + G+ PTLIQ AIPL LQ K D++ +A TGSGKT A+ IP+IQ I++ K+
Sbjct: 30 LQAIHRNGYHHPTLIQSHAIPLALQQKRDIIAKAATGSGKTLAYLIPVIQTILDCKKDES 89
Query: 89 VQ----ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERP 144
+ +T +VL P+KEL +Q+ +++LT+ CS+DVK ++ S + +V LL+E P
Sbjct: 90 SELGSNKTLGIVLVPTKELASQVSTVLEQLTLYCSKDVKNLNASSDMSHAVLSSLLLESP 149
Query: 145 DIVVATPARALAHLKAKTLDLK-SSLEIVIIDEADLVFSFGYEDDMKAVLKFLP--KLYQ 201
+I++ATPA+ L+ L+ + +L+ ++IDE DLV SFGY+DD+ + +FLP K Q
Sbjct: 150 EIIIATPAKLLSLLETNINAISLENLKFLVIDEVDLVLSFGYQDDLTKISEFLPLQKSLQ 209
Query: 202 AILASATLSEDVLSLKHLILRNPVILKLEEPAIAPV-SQLAHYHILAQEDEKATILYTLL 260
L SATL++D+ LK R+P ILK + I S+L Y++ E +K + Y +
Sbjct: 210 TFLMSATLNDDIQDLKKRFCRSPAILKFNDDQITKDDSKLLQYYVKTTEFDKFLLCYVIF 269
Query: 261 KLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVI 320
KL L++GK++IFVN +D+ Y+LKL LEQF I +C+LNSELPA +R H V QFN+ +Y ++
Sbjct: 270 KLGLIKGKSLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVDQFNKNVYQLL 329
Query: 321 IASDE---------------KALETPQINSTNNRKR------KRDKESGVSRGIDFQFVS 359
IA+D+ + ++ +++ NN K+ K+DKE GVSRG+DF+ V+
Sbjct: 330 IATDDTEYIREEDEEEKESEVSEDSKEVDGKNNNKKIKRLQVKKDKEYGVSRGVDFKNVA 389
Query: 360 NVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMN 419
V+NFD P + Y+HR GRTAR GTA+SFV + ++ ++ + R++ ++
Sbjct: 390 CVLNFDLPTTAKSYVHRVGRTARAGKSGTAISFV-VPLKEFGKHKPSMCPTAKRDEKILT 448
Query: 420 DVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS-------------------- 459
+ + + ++PY F+ +V+GF YR +D +R+
Sbjct: 449 RI----IKQQSKLGLELQPYSFDNKQVEGFRYRLEDGFRAVTQVAVREARIKELKQELLA 504
Query: 460 -----NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPPALKK 501
+FE+NP +L++LRHDK L+ R+Q HL VP+Y++P ++K+
Sbjct: 505 SDKLKRHFEENPQELQSLRHDKELHPARVQQHLKRVPEYLLPDSVKQ 551
>gi|346320186|gb|EGX89787.1| ATP-dependent RNA helicase DBP9 [Cordyceps militaris CM01]
Length = 604
Score = 355 bits (911), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 205/534 (38%), Positives = 306/534 (57%), Gaps = 66/534 (12%)
Query: 21 FTFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMI 77
F+FT + +QAIA+ + +PTL+Q AIP+ L+ +DVL +A+TGSGKT A+ +P++
Sbjct: 26 FSFTDLALDARLVQAIAEQKFSQPTLVQRMAIPIALKGQDVLCKAKTGSGKTAAYVLPVL 85
Query: 78 QKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQE 137
I+ K T T AL+L P++EL +Q+ K I++ + CS+DV+ V +++++ +VQ
Sbjct: 86 AGILKRKTTDSEPATTALILVPTRELADQVFKAIEQFSAFCSKDVRAVKLTDKLSDAVQR 145
Query: 138 PLLVERPDIVVATPARALAHLKAKTLDLK-SSLEIVIIDEADLVFSFGYEDDMKAVLKFL 196
LL PDIV++TPARA ++ + L S L +++DEADL+ S+GY+ D++ + L
Sbjct: 146 SLLATLPDIVISTPARAWHNVNGNSAALSLSKLSHLVLDEADLLLSYGYDSDLENLSWSL 205
Query: 197 PKLYQAILASATLSEDVLSLKHLILRN--PVILKLEEP--AIAPVSQLAHYHILAQEDEK 252
PK Q I+ SATL+ ++ SLK + R+ P +L LEEP ++QL EDEK
Sbjct: 206 PKGIQTIMMSATLTSEIDSLKKIFYRDNVPELLDLEEPDNEGEGITQL---FTKCGEDEK 262
Query: 253 ATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQF 312
+ Y + KL LV+GK IIFV +D+CY+LKL+ EQF I +C+LNSELP +R H V +F
Sbjct: 263 FLLAYIIFKLKLVKGKCIIFVGDIDRCYRLKLFFEQFGIRSCILNSELPVNSRIHVVEEF 322
Query: 313 NQGLYDVIIASDEKALETPQ--------------------INSTNNRKRKR-----DKES 347
N+ +YD+IIASDEK + + S K+KR D E
Sbjct: 323 NKNVYDIIIASDEKEILGSEDQAAEGEAEEGQEEEAEEATETSEKRPKKKRKSTKQDLEY 382
Query: 348 GVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTAL 407
GVSRGIDF+ V+ VINFD P Y HR GRTAR G ALSFV ++Q + T +
Sbjct: 383 GVSRGIDFKNVAAVINFDLPTTASSYTHRIGRTARAGKAGMALSFVVPKDQYRKHIPTTI 442
Query: 408 SFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS-------- 459
+ +++ ++ + + E +KPY F+ ++V+ F YR DA R+
Sbjct: 443 ASAE-KDEKILARITKQQAKKGKE----MKPYNFSTEQVEAFRYRMNDALRAVTKVAVRE 497
Query: 460 -----------------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVP 496
YFE+NPT++ LRHD L T R Q+HL +P+Y++P
Sbjct: 498 ARTRELRQELLKSEKLKRYFEENPTEMAHLRHDGELRTARQQAHLKHIPEYLLP 551
>gi|400599562|gb|EJP67259.1| DEAD/DEAH box helicase [Beauveria bassiana ARSEF 2860]
Length = 604
Score = 355 bits (910), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 206/537 (38%), Positives = 308/537 (57%), Gaps = 66/537 (12%)
Query: 18 ELPFTFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAI 74
E F+FT + +QA+A+ + +PTL+Q AIP+ L+ +DVL +A+TGSGKT A+ +
Sbjct: 23 EKSFSFTDLALDPRLVQAVAEQKFSQPTLVQRMAIPIALKGQDVLCKAKTGSGKTAAYVL 82
Query: 75 PMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVS 134
P++ I+ K T T AL+L P++EL +Q+ K I++ + CS+DV+ V +++++ +
Sbjct: 83 PVLNGILKRKTTDPEPATTALILVPTRELADQVFKAIEQFSAFCSKDVRAVKLTDKLSDA 142
Query: 135 VQEPLLVERPDIVVATPARALAHLKAKTLDLK-SSLEIVIIDEADLVFSFGYEDDMKAVL 193
VQ LL PDIV++TPARA ++ + L + L +++DEADL+ S+GY+ D++ +
Sbjct: 143 VQRSLLATLPDIVISTPARAWHNVNGNSSALSLAKLSHLVLDEADLLLSYGYDGDLENLS 202
Query: 194 KFLPKLYQAILASATLSEDVLSLKHLILRN--PVILKLEEP--AIAPVSQLAHYHILAQE 249
+PK Q I+ SATL+ +V SLK + R+ P +L LEEP ++QL E
Sbjct: 203 WSIPKGIQTIMMSATLTSEVNSLKKIFYRDNVPELLDLEEPENEGEGITQLV---TKCAE 259
Query: 250 DEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAV 309
DEK + Y + KL LV+GK IIFV +D+CY+LKL+ EQF I +C+LN+ELP +R H V
Sbjct: 260 DEKFLLAYVIFKLKLVKGKCIIFVADIDRCYRLKLFFEQFGIRSCILNAELPVNSRIHVV 319
Query: 310 YQFNQGLYDVIIASDEKAL----------------------ETPQINSTNNRKRK---RD 344
+FN+ +YD+IIASDE + ET + +KRK +D
Sbjct: 320 EEFNKNVYDIIIASDENEILGNEDKAGEEEAEEAEEQEGEEETQKSEKRPKKKRKATEQD 379
Query: 345 KESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDG 404
E GVSRGIDF+ V+ VINFD P Y HR GRTAR G ALSFV ++Q +
Sbjct: 380 LEYGVSRGIDFKNVAAVINFDLPTTASSYTHRIGRTARAGKAGMALSFVVPKDQYRKHMP 439
Query: 405 TALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS----- 459
T ++ +++ +M + + E IKPY FN ++V+ F YR DA R+
Sbjct: 440 TTIASTE-KDEKIMARITKQQAKKGKE----IKPYNFNPEQVEAFRYRMNDALRAVTKVA 494
Query: 460 --------------------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVP 496
YFE+NPT++ LRHD L T R Q+HL +P+Y++P
Sbjct: 495 VREARTRELRQELLKSEKLKRYFEENPTEMAHLRHDGELRTARQQAHLKHIPEYLLP 551
>gi|340519870|gb|EGR50107.1| predicted protein [Trichoderma reesei QM6a]
Length = 633
Score = 354 bits (909), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 207/517 (40%), Positives = 298/517 (57%), Gaps = 57/517 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
+QA+A+ +L+PTL+Q RAIPL L KDVL +A+TGSGKT A+ +P++ I+ K
Sbjct: 69 VQAVAQQKFLKPTLVQRRAIPLALDGKDVLCKAKTGSGKTAAYVLPVLAGILKKKSVDPT 128
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T AL+L P++EL +Q+ K+I+ + C++DV+ V +++++ +VQ LL PDIV++
Sbjct: 129 PATTALILVPTRELADQVFKSIELFSAFCAKDVRAVKLTDKLTDAVQRSLLSTCPDIVIS 188
Query: 150 TPARALAHLKAKTLDLK-SSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
TPARA ++ + L L +++DEADL+ S+GY +D++++ LPK Q I+ SAT
Sbjct: 189 TPARAWHNVNGNSGALSLDKLAYLVLDEADLLLSYGYSEDLESLSFSLPKGIQTIMMSAT 248
Query: 209 LSEDVLSLKHLILRN--PVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQ 266
L+ +V SLK + R+ P +L LEEP A + EDEK ++Y + KL LV+
Sbjct: 249 LTTEVDSLKKIFYRDQQPTLLDLEEPD-AEGEGVTQLVTKCGEDEKFLLIYVIFKLQLVK 307
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
GK IIFV +D+CY+LKLY EQF I +C+LNSELP +R H V +FN+ YD+IIASDEK
Sbjct: 308 GKCIIFVADIDRCYRLKLYFEQFGIRSCILNSELPVNSRIHVVEEFNRNAYDIIIASDEK 367
Query: 327 ----------------ALETPQINSTNNRKRKR-----DKESGVSRGIDFQFVSNVINFD 365
A++ ++ K+KR D E GVSRGIDF+ V+ VINFD
Sbjct: 368 EVLGNEEKAEEEQEDEAMDDGEVKEGGRPKKKRKAAKGDVEYGVSRGIDFKNVAAVINFD 427
Query: 366 FPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLR-EQDLMNDVNEY 424
P Y HR GRTAR G ALSFV +DL S S ++ ++ + +
Sbjct: 428 LPTSASSYTHRIGRTARAGRAGMALSFVV--PKDLYRKHIHTSTPSAENDEKILARITKQ 485
Query: 425 LMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS------------------------- 459
E +KPY FN ++V+ F YR DA R+
Sbjct: 486 QAKKGKE----LKPYNFNKEQVEAFRYRMNDALRAVTKVAIREARTRELRQELLKSEKLK 541
Query: 460 NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVP 496
YFE+NP+++ LRHD L T R Q+HL VPDY++P
Sbjct: 542 RYFEENPSEMNHLRHDGELRTARQQAHLKHVPDYLLP 578
>gi|425768045|gb|EKV06591.1| ATP dependent RNA helicase (Dbp9), putative [Penicillium digitatum
Pd1]
gi|425769672|gb|EKV08158.1| ATP dependent RNA helicase (Dbp9), putative [Penicillium digitatum
PHI26]
Length = 616
Score = 354 bits (908), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 203/536 (37%), Positives = 298/536 (55%), Gaps = 74/536 (13%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLK-QTAQV 89
QA+ K + +PTL+Q +AIPL L+ KD+L RA+TGSGKT A+ +P++Q I+ K
Sbjct: 42 QALIKEKFTKPTLVQSKAIPLALEGKDILARAKTGSGKTAAYVLPILQAILQQKIADPSS 101
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ T AL+L P++EL Q+ K I C +D++ V+++++V VQ +L + PDI+V+
Sbjct: 102 KATTALILVPTRELAEQVQKVITSFASFCGKDIRSVNLTQKVSDEVQRSMLADFPDIIVS 161
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R +++ L L + ++IDEADLV S+GY++++ A+ K +P+ Q L SATL
Sbjct: 162 TPTRVYSNVNNSALTL-DKITHLVIDEADLVLSYGYDEEINALSKAIPRGAQTFLMSATL 220
Query: 210 SEDVLSLKHLILRNPVILKLEEP--AIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
+ +V +LK L RNPVILKLEE A VSQ + + EDEK + Y + KL L++G
Sbjct: 221 TSEVDTLKDLYCRNPVILKLEEKEEKGAGVSQ---FVVRCTEDEKFLLTYVIFKLQLIKG 277
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
K IIFV VD+CY++KL+LEQF + +CVLNSELP +R H V +FN+G+YD+I+A+DE+
Sbjct: 278 KVIIFVADVDRCYRVKLFLEQFGLKSCVLNSELPINSRIHVVEEFNKGVYDIIVAADEQE 337
Query: 328 L--------------------------ETPQINSTNNRKRK-----------RDKESGVS 350
+ E + N +++K ++K+ ++
Sbjct: 338 VLGVTKSKKSREVKEADEEAKEEIGSSEDEEAVDENGKEKKPEAKKRRKMTSKEKDYSIA 397
Query: 351 RGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFV 410
RGIDFQ V+ V+NFD P + Y HR GRT R G ALSFV EQ + T++
Sbjct: 398 RGIDFQNVACVLNFDLPTSSKSYTHRIGRTGRAGKAGMALSFVIPTEQYGKHRPTSIPST 457
Query: 411 SLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS----------- 459
E L + HE +KPY F + +V F YR DA RS
Sbjct: 458 KHDEAMLAKIIKRQSKLG-HE----VKPYHFEMTQVDAFRYRMTDALRSVTRLAVQEARG 512
Query: 460 --------------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPPALKK 501
+FE+NP +L LRHD L R+Q+HL VPDY++P +K
Sbjct: 513 REIRQELIKSEKLKRHFEENPDELRQLRHDGELRAARVQAHLKHVPDYLMPAKGRK 568
>gi|348676256|gb|EGZ16074.1| hypothetical protein PHYSODRAFT_506165 [Phytophthora sojae]
Length = 610
Score = 354 bits (908), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 206/496 (41%), Positives = 293/496 (59%), Gaps = 46/496 (9%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ 90
+A+AK+ ++ TL+Q IPL LQ KD+LVRARTGSGKT AFA+P++ KI+ KQ A
Sbjct: 31 KAVAKMRFVHATLVQVHCIPLALQGKDLLVRARTGSGKTAAFALPLLHKILQHKQDAPAS 90
Query: 91 E--TKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
E +ALVL P+KEL Q +++ EL C V + + Q ++ Q+ LL + PD++V
Sbjct: 91 EPVVRALVLVPTKELVEQTRRHMMELMYYCQDTVSLLALGGQ-SMNAQQALLRDAPDVLV 149
Query: 149 ATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
+TP R +AHL+A L LK S++ V+IDEADLV SFGY +D++ + LPK Q SAT
Sbjct: 150 STPGRLVAHLEAGNLTLKDSVQTVVIDEADLVLSFGYGEDIRTIFNALPKACQTFCMSAT 209
Query: 209 LSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGK 268
LS ++ LK +L NP ++KLEE A +L +++ + +K +LY LL+L +V GK
Sbjct: 210 LSPELEKLKRSVLHNPAVVKLEEGATD--GKLQQFYLPVKPADKDLLLYALLRLGVVSGK 267
Query: 269 TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL 328
I FVN+ D Y+LKL+ EQF I + VLN++LP +R H + +FN+GL+D +IA+D+
Sbjct: 268 VIFFVNSTDAAYRLKLFFEQFVIKSAVLNAKLPHNSRQHIIEEFNRGLFDYLIATDDSVD 327
Query: 329 ETPQINSTNNRKRKR-DKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQG 387
Q T KR R D+ GVSRG+DF+ V VIN DFP ++ Y HR GRTARG G
Sbjct: 328 RDEQEKKTVGSKRGRADEGYGVSRGVDFRGVQFVINVDFPKSVRAYTHRIGRTARGGASG 387
Query: 388 TALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQ--FNLDE 445
TALS VS +D + AL V R+Q + ++ N D I +P + F+L +
Sbjct: 388 TALSLVS---KDDPKEERALKRVQARQQAVRSESN----------DVIAQPAELAFDLKD 434
Query: 446 VKGFEYRAKDAWR-------------------------SNYFEDNPTDLETLRHDKALYT 480
+ F YR +D R + +F+ NP DL L HDK + +
Sbjct: 435 IDCFRYRVEDVRRAVTRVAVREAQLADVKKEMLNSERLAAHFQANPRDLNMLEHDKVVGS 494
Query: 481 VRIQSHLADVPDYIVP 496
+Q HLA +PDY+VP
Sbjct: 495 APVQPHLATIPDYLVP 510
>gi|45201374|ref|NP_986944.1| AGR278Cp [Ashbya gossypii ATCC 10895]
gi|74691680|sp|Q74ZC1.1|DBP9_ASHGO RecName: Full=ATP-dependent RNA helicase DBP9
gi|44986308|gb|AAS54768.1| AGR278Cp [Ashbya gossypii ATCC 10895]
gi|374110194|gb|AEY99099.1| FAGR278Cp [Ashbya gossypii FDAG1]
Length = 595
Score = 354 bits (908), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 207/557 (37%), Positives = 322/557 (57%), Gaps = 74/557 (13%)
Query: 16 YFELPFTFTLFCIPL---QAIAKLGWLEPTLIQERAIPLIL-QNKDVLVRARTGSGKTGA 71
Y + TF+ F + L Q++ G+ PTLIQ AIPL L Q +D++ +A TGSGKT A
Sbjct: 11 YLDESKTFSSFQLDLRLQQSLKSSGFHHPTLIQSSAIPLALEQKRDIIAKASTGSGKTLA 70
Query: 72 FAIPMIQKIINLKQTAQVQETKA---LVLSPSKELCNQLHKNIQELTMKCSRDVKCVDIS 128
+ IP++Q I+ K T T +VL P++EL Q+ +++L + CS+D++ ++IS
Sbjct: 71 YLIPVVQTILEHKSTQGADRTTGTLGVVLVPTRELAQQVRVVLEKLVLYCSKDIRLLNIS 130
Query: 129 EQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKS--SLEIVIIDEADLVFSFGYE 186
VD SV PLL E P+I+++TP++ + L+ K L S L ++IDE DL+ +FGY+
Sbjct: 131 ANVDDSVLGPLLAENPEIIISTPSQLVKILEGKHLQTISLRDLRFLVIDEVDLILTFGYQ 190
Query: 187 DDMKAVLKFLP--KLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAP-VSQLAHY 243
+D+ + ++LP K QA L SATL+E++ LK R+P ILKL + I ++L Y
Sbjct: 191 EDLLKISQYLPLKKNLQAFLMSATLNEEIQELKTKFCRSPAILKLNDDEINKNKNKLLQY 250
Query: 244 HILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAK 303
++ E +K + Y + KL+L++GKTIIFVNT+D+ Y+LKL LEQF I +C+LNSELP
Sbjct: 251 YVKVSEFDKFLLCYVIFKLSLIKGKTIIFVNTIDRGYRLKLVLEQFGIRSCILNSELPLN 310
Query: 304 ARCHAVYQFNQGLYDVIIASDEKALE----------------------------TPQINS 335
+R H V +FN+ +Y ++IA+D+ T + +S
Sbjct: 311 SRQHIVDEFNKNVYQLLIATDDNEYIEEEDEETVEAGEEGSEKLEEGGEKLEEITSKTSS 370
Query: 336 TNNRKR--KRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSF- 392
TN +++ K+DKE G SRG+DFQ VS V+NFD P + Y+HR GRTAR GTA+SF
Sbjct: 371 TNGKQKIAKKDKEYGASRGVDFQNVSCVLNFDLPTTAKSYVHRIGRTARAGKSGTAISFV 430
Query: 393 VSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYR 452
V L+E ++ + +++ ++ V + + F I+PY F++ +++GF YR
Sbjct: 431 VPLKEYG--KHKPSMLVTAKKDEKILARV----IKQQSKLGFQIEPYNFDVKQIEGFRYR 484
Query: 453 AKDAWRS-------------------------NYFEDNPTDLETLRHDKALYTVRIQSHL 487
+D +R+ +FE+NP DL++LRHDK L+ R+Q HL
Sbjct: 485 MEDGFRAVTQVAVREARVKELKQELLASEKLKRHFEENPHDLDSLRHDKELHPARVQQHL 544
Query: 488 ADVPDYIVPPALKKLAR 504
VPDY++P A ++ +
Sbjct: 545 KRVPDYLLPEAARETGK 561
>gi|444315237|ref|XP_004178276.1| hypothetical protein TBLA_0A09740 [Tetrapisispora blattae CBS 6284]
gi|387511315|emb|CCH58757.1| hypothetical protein TBLA_0A09740 [Tetrapisispora blattae CBS 6284]
Length = 617
Score = 353 bits (907), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 211/569 (37%), Positives = 321/569 (56%), Gaps = 91/569 (15%)
Query: 15 VYFELPFTFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNK-DVLVRARTGSGKTGAFA 73
V FE +F L LQAI G+ PTLIQ AIPL LQ K D++ +A TGSGKT A+
Sbjct: 17 VSFE---SFQLDSRLLQAIKGSGFHNPTLIQSHAIPLALQEKRDIIAKAATGSGKTLAYV 73
Query: 74 IPMIQKIINLKQTAQVQE--------TKALVLSPSKELCNQLHKNIQELTMKCSRDVKCV 125
IP+IQ I+N K+T + + T ++L P++EL Q+ I+++ + CS D+K +
Sbjct: 74 IPVIQTILNYKRTLENNQGTDITDSSTLGIILVPTRELAQQVLDVIEKMILYCSNDIKAL 133
Query: 126 DISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLK-SSLEIVIIDEADLVFSFG 184
+IS+ + SV +L E P+I+V+TPA+ L+ L +L+ ++IDE DLV +FG
Sbjct: 134 NISKDMPPSVLSTMLSESPEIIVSTPAKLNTLLETNNNSLYLDNLQFLVIDEVDLVLTFG 193
Query: 185 YEDDMKAVLKFLP--KLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAP-VSQLA 241
Y+DD+K + ++LP K Q L SATL++D+ LK R+P I+K + IA S+L
Sbjct: 194 YQDDLKNITQYLPLKKNLQTFLMSATLNDDIQELKQQYCRSPAIIKFNDDQIAKDQSKLL 253
Query: 242 HYHILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELP 301
Y++ E +K + Y + KLNL++GKT+IFVN +D+ Y+LKL LEQF I +C+LN+ELP
Sbjct: 254 QYYVTVSEFDKFLLTYVIFKLNLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNNELP 313
Query: 302 AKARCHAVYQFNQGLYDVIIASDE---------KALETPQ-------------------- 332
A +R H V QFN+ +Y ++IA+D+ + + PQ
Sbjct: 314 ANSRQHIVEQFNKNVYRLLIATDDTEYIKDEEEQDDDEPQNDKTKVVEESEVVEKESDKE 373
Query: 333 -----INST-----------NNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHR 376
NST NN K K+DKE GVSRG+DFQ ++ V+NFD P + Y+HR
Sbjct: 374 SDKDDDNSTQNEVKSKKETKNNLKVKKDKEYGVSRGVDFQNIACVLNFDLPTTSKSYVHR 433
Query: 377 AGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFII 436
GRTAR GTA+SFV + ++ ++ + R++ ++ + ++ ++ I
Sbjct: 434 IGRTARAGKSGTAISFV-IPLKEFGKHKASMCPTTKRDEKIL----QRIIKQQNKLGLEI 488
Query: 437 KPYQFNLDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLET 471
+PY F++ +++GF YR +D +R+ +FE+NP +L +
Sbjct: 489 QPYAFDIKQIEGFRYRMEDGFRAVTQVAVREARIKELKQELLASDKLKRHFEENPQELNS 548
Query: 472 LRHDKALYTVRIQSHLADVPDYIVPPALK 500
LRHDK L+ RIQ HL VPDY++P K
Sbjct: 549 LRHDKELHPARIQQHLKRVPDYLLPEGAK 577
>gi|406868160|gb|EKD21197.1| putative ATP-dependent RNA helicase dbp9 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 590
Score = 353 bits (907), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 204/529 (38%), Positives = 293/529 (55%), Gaps = 84/529 (15%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQ IAK + PTL+Q +AIPL L+ +D+L RA+TG+GKT A
Sbjct: 36 LQGIAKQNFQTPTLVQSKAIPLALEGRDILARAKTGTGKTAA------------------ 77
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T AL+L P++EL +Q+ K ++ + C+++++ V+++++V +V LL + PDIV+A
Sbjct: 78 --TSALILVPTRELADQVIKVVESFSAFCTKEIRAVNLAQKVSDAVLRSLLADSPDIVIA 135
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TPARA +L L++ L ++IDEADLV S+GY++D++ V K +PK Q IL SATL
Sbjct: 136 TPARASMNLNTAAFSLEN-LAHLVIDEADLVLSYGYDEDLQNVAKIMPKGVQTILMSATL 194
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+ +V +LK L RNPV+LKLEE + ++ + + EDEK + Y + KL L++GK
Sbjct: 195 TSEVETLKGLFCRNPVVLKLEEAEVE-GEGVSQFVVKCAEDEKFLLAYVIFKLKLIKGKC 253
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL- 328
IIFV +D+CY+LKL+LEQF +C+LNSELP +R H V +FN+ +YD+IIASDE +
Sbjct: 254 IIFVGDIDRCYRLKLFLEQFGTRSCILNSELPVNSRIHVVEEFNKNVYDIIIASDEHEVL 313
Query: 329 ----ETPQINSTN---------------------------NRKRKRDKESGVSRGIDFQF 357
E + N TN R K+DKE GVSRGIDF+
Sbjct: 314 GDEDEPKEDNGTNEAVAEDGTAAVKKDKNAEPAAQPSKKKRRTVKKDKEYGVSRGIDFKN 373
Query: 358 VSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDL 417
V+ V+NFD P + Y HR GRTAR G ALSFV +E + T++ E+ L
Sbjct: 374 VACVLNFDLPTSSKSYTHRIGRTARAGQTGMALSFVIPKELYRKHKPTSIQSAKDDEKIL 433
Query: 418 MNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS------------------ 459
V +KPY F++ +V F YR DA R+
Sbjct: 434 AKIVKHQAKKGKE-----VKPYNFDMKQVDAFRYRMGDALRAVTGIAIREARTRELRQEL 488
Query: 460 -------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPPALKK 501
+FE+NP DL LRHD L R+QSH+ VP+Y++P +K
Sbjct: 489 IKSEKLKRHFEENPEDLHHLRHDGELRAARVQSHMKHVPEYLLPKEGRK 537
>gi|358397310|gb|EHK46685.1| hypothetical protein TRIATDRAFT_132616 [Trichoderma atroviride IMI
206040]
Length = 656
Score = 353 bits (906), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 204/516 (39%), Positives = 290/516 (56%), Gaps = 56/516 (10%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
+QA+A+ G+L+PTL+Q RAIPL L KDVL +A+TGSGKT A+ +P++ I+ K
Sbjct: 94 VQAVAEQGFLKPTLVQRRAIPLALDGKDVLCKAKTGSGKTAAYVLPVLAGILKKKSVDST 153
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T AL+L P++EL +Q+ K I+ + C++DV+ V +++++ +VQ LL PDIV++
Sbjct: 154 AATTALILVPTRELADQVFKAIELFSAFCAKDVRAVKLTDKLTDAVQRSLLSTCPDIVIS 213
Query: 150 TPARALAHLKAKTLDLK-SSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
TPARA ++ + L L +++DEADL+ S+GY +D++++ +PK Q + SAT
Sbjct: 214 TPARAWHNVNGNSSALALDKLAYLVLDEADLLLSYGYSEDLESLSWSIPKGIQTTMMSAT 273
Query: 209 LSEDVLSLKHLILR--NPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQ 266
L+ +V SLK + R P +L LEEP A + EDEK ++Y + KL LV+
Sbjct: 274 LTTEVDSLKKIFYREQQPELLDLEEPD-AEGEGVTQLVTKCGEDEKFLLIYVIFKLQLVK 332
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
GK IIFV +D+CY+LKLY EQF I +C+LNSELP +R H V +FN+ +YD+IIASDEK
Sbjct: 333 GKCIIFVADIDRCYRLKLYFEQFGIRSCILNSELPVNSRIHVVEEFNRNVYDIIIASDEK 392
Query: 327 AL--------------------ETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDF 366
+ + + K D E GVSRGIDF+ V+ VINFD
Sbjct: 393 EVLGNEEKAEEEQEDEENEGESKEESRPKKKRKAAKGDVEYGVSRGIDFKNVAAVINFDL 452
Query: 367 PLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLR-EQDLMNDVNEYL 425
P Y HR GRTAR G ALSFV +DL S S ++ ++ + +
Sbjct: 453 PTSASSYTHRIGRTARAGRTGMALSFVV--PKDLYKKHIYTSIPSAENDEKILARITKQQ 510
Query: 426 MTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS-------------------------N 460
E + PY FN D+V F YR DA R+
Sbjct: 511 AKKGKE----LNPYDFNKDQVDAFRYRMNDALRAVTKVAIREARTRELRQELLKSEKLKR 566
Query: 461 YFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVP 496
YFE+NPT++ LRHD L T R Q+HL VPDY++P
Sbjct: 567 YFEENPTEMNHLRHDGELRTARQQAHLKHVPDYLLP 602
>gi|301122249|ref|XP_002908851.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
gi|262099613|gb|EEY57665.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
Length = 609
Score = 353 bits (906), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 204/501 (40%), Positives = 294/501 (58%), Gaps = 47/501 (9%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ 90
+A+AK+ ++ TL+Q IPL LQ KD+LVRARTGSGKT AFA+P++ KI+ KQ
Sbjct: 30 KAVAKMRFVHATLVQVHCIPLALQGKDLLVRARTGSGKTAAFALPLLHKILQHKQDTPAS 89
Query: 91 E--TKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
E +ALVL P+KEL Q +++ +L C V + + Q ++ Q+ LL + PD++V
Sbjct: 90 EPAVRALVLVPTKELVEQTRRHMMDLMYYCQDTVSLLALGGQ-SMNAQQALLRDAPDVLV 148
Query: 149 ATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
ATP R +AHL+A L LK S++ V+IDEADLV SFGY +D++ + LPK Q SAT
Sbjct: 149 ATPGRLVAHLEAGNLTLKDSVQTVVIDEADLVLSFGYGEDIRTIFNALPKACQTFCMSAT 208
Query: 209 LSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGK 268
LS ++ LK +L NP ++KLEE A +L +++ + +K +LY LL+L +V GK
Sbjct: 209 LSPELEKLKRSVLHNPAVVKLEEGATD--GKLQQFYLPVKASDKDLLLYALLRLGVVSGK 266
Query: 269 TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL 328
I FVN+ D Y+LKL+ EQF I + VLN++LP +R H + +FN+GL+D +IA+D+
Sbjct: 267 VIFFVNSTDAAYRLKLFFEQFVIKSAVLNAKLPHNSRQHIIEEFNRGLFDYLIATDDSVD 326
Query: 329 ETPQINSTNNRKRKR--DKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQ 386
Q KR R D+ GVSRG+DF+ V VIN DFP ++ Y HR GRTARG
Sbjct: 327 RDEQETKAVGSKRGRADDESYGVSRGVDFRGVQFVINVDFPKSVRAYTHRIGRTARGGAS 386
Query: 387 GTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQ--FNLD 444
GTALS VS ++ + AL V ++Q ++++ N D I +P + F+L
Sbjct: 387 GTALSLVS---KEDAKEERALKRVQAKQQAVLSETN----------DVIAQPAELAFDLK 433
Query: 445 EVKGFEYRAKDAWR-------------------------SNYFEDNPTDLETLRHDKALY 479
E+ F YR +D R + +F+ NP DL L HDK +
Sbjct: 434 EIDCFRYRVEDVRRAVTRVAVREAQLADVKKEMLNSDRLAAHFQANPRDLNMLEHDKVVG 493
Query: 480 TVRIQSHLADVPDYIVPPALK 500
+ +Q HLA +PDY+VP L+
Sbjct: 494 SAPVQPHLATIPDYLVPTELQ 514
>gi|343424963|emb|CBQ68500.1| probable ATP dependent RNA helicase of the DEAD-box family
[Sporisorium reilianum SRZ2]
Length = 653
Score = 353 bits (905), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 204/534 (38%), Positives = 301/534 (56%), Gaps = 74/534 (13%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTA-- 87
L+A+A LG+ PT IQ++AIPL L KD+L RARTGSGKT A+ +P++QK+++ K
Sbjct: 64 LRALADLGYGIPTPIQQKAIPLALAGKDILARARTGSGKTLAYGLPLLQKVLDAKSAVAK 123
Query: 88 ---QVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERP 144
Q T+ALVL P++EL Q+ +++ + DV+ V+++ + VQ LL E+P
Sbjct: 124 SDPNRQLTRALVLVPTRELAEQVFRHLSVIIEHVRDDVRLVNVAREASDKVQRLLLSEKP 183
Query: 145 DIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVL--KFLPKLYQA 202
D+V+ATP++ALA+L+ +LDLK+ +E + IDEADL+ S+G++ D+K++L FLP +Q
Sbjct: 184 DVVIATPSKALAYLQNASLDLKTGMESLAIDEADLILSYGHDADVKSLLGANFLPAHFQT 243
Query: 203 ILASATLSEDVLSLKHLILRNPVILKL-EEPAIAPVSQLAHYHILAQEDEKATILYTLLK 261
L SAT++ DV LK L+LRNPVILKL E A S L ++ E++K ++Y +LK
Sbjct: 244 FLMSATMTSDVSKLKGLLLRNPVILKLNHEDESASGSNLVQFYTKTTEEDKFLLVYVILK 303
Query: 262 LNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVII 321
L L++GK I+FVN +++ Y+LKL+LE+F + CVLN+ELP +R V +FN+G +D I+
Sbjct: 304 LKLIRGKAILFVNELERGYRLKLFLEKFGLRACVLNAELPINSRYSIVEEFNKGKFDYIV 363
Query: 322 ASDEKALETPQINS-----------------------------TNNRKRKRDKESGVSRG 352
A+DE + + T+ R + E GVSRG
Sbjct: 364 ATDEPTGASGAVGDDEEEEGEEEAEDGEGESKKRKSSKDKAVKTSKRAKSTSAEYGVSRG 423
Query: 353 IDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFV----SLREQDLMNDGTALS 408
+DF VS VINFD P + YIHR GRTARG + GT+LSF+ + + +
Sbjct: 424 VDFVNVSCVINFDLPSSVDAYIHRVGRTARGGSSGTSLSFIVPSAEVGRSKYLYCASTHG 483
Query: 409 FVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS--------- 459
+L +Q + L L E + ++ V GF YR D +S
Sbjct: 484 DETLFKQLARPSSHALLGGALQE-------WNYDAASVAGFRYRVTDTLKSITRATIREA 536
Query: 460 ----------------NYFEDNPTDLETLRHDKALYTVRI-QSHLADVPDYIVP 496
++FED+P DL L+HDKAL R Q+HL VP Y+VP
Sbjct: 537 RIKELKHEILSSAKLQSHFEDHPDDLAYLQHDKALLGSRAQQAHLKHVPQYLVP 590
>gi|67540408|ref|XP_663978.1| hypothetical protein AN6374.2 [Aspergillus nidulans FGSC A4]
gi|74680800|sp|Q5AZA6.1|DBP9_EMENI RecName: Full=ATP-dependent RNA helicase dbp9
gi|40739568|gb|EAA58758.1| hypothetical protein AN6374.2 [Aspergillus nidulans FGSC A4]
gi|259479407|tpe|CBF69600.1| TPA: ATP-dependent RNA helicase dbp9 (EC 3.6.1.-)
[Source:UniProtKB/Swiss-Prot;Acc:Q5AZA6] [Aspergillus
nidulans FGSC A4]
Length = 610
Score = 353 bits (905), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 213/537 (39%), Positives = 308/537 (57%), Gaps = 67/537 (12%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQT-AQV 89
QA+ K + +PT +Q +AIPL L+ KD+L RA+TGSGKT A+ +P++Q I+ K +
Sbjct: 41 QALVKEKFSKPTPVQAKAIPLALEGKDILARAKTGSGKTAAYVLPILQTILQKKAIDPSM 100
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ T L+L P++EL Q+ K I C +DV+ V+++++V +VQ+ +L + PDIVV+
Sbjct: 101 KATTGLILVPTRELAEQVQKVITTFAAFCGKDVRSVNLTQKVSDAVQKAMLADYPDIVVS 160
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TPAR +A+L L L++ L ++IDEADLV S+GYEDD+ A+ K +P+ Q L SATL
Sbjct: 161 TPARVIANLGTSALSLEN-LTHLVIDEADLVLSYGYEDDINALSKAIPRGVQTFLMSATL 219
Query: 210 SEDVLSLKHLILRNPVILKLEEP--AIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
+ +V +LK L R+PVILKLE+ A VSQ + + EDEK + Y + KL L++G
Sbjct: 220 TAEVDTLKGLFCRSPVILKLEDKDDHGAGVSQ---FVVKCAEDEKFLLTYVIFKLQLIKG 276
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
K IIFV +D+ Y+LKL+LEQF I +C+LNSELP +R H V +FN+G+YD+IIA+DE+
Sbjct: 277 KVIIFVGDIDRSYRLKLFLEQFGIKSCILNSELPVNSRIHVVEEFNKGVYDIIIAADEQE 336
Query: 328 L--------------------------ETPQINSTNNRKRK----RDKESGVSRGIDFQF 357
+ + + ST KR+ ++K+ G+SRGIDFQ
Sbjct: 337 VLGVSKSRKSKDATEGDDELLSDEDEETSAKAASTRTDKRRKLSSKEKDYGISRGIDFQN 396
Query: 358 VSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDL 417
V+ V+NFD P + Y HR GRT RG G ALSFV ++ + T++S E L
Sbjct: 397 VACVLNFDLPTSSKSYTHRIGRTGRGGKTGMALSFVIPADKYGKHKPTSISSAKHDEAVL 456
Query: 418 MNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS------------------ 459
+ HE +KPY F++ +V F YR DA R+
Sbjct: 457 AKIIKRQAKLG-HE----VKPYHFDMTQVDAFRYRMSDALRAITRLAIQEARAREIRQEL 511
Query: 460 -------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPPALKKLARIEDDG 509
+FE+NP +L LRHD L RIQ HL +P+Y++P KK ED G
Sbjct: 512 VKSEKLKRHFEENPEELRQLRHDGELRAARIQPHLKHIPEYLMPAKGKKGISNEDVG 568
>gi|443897458|dbj|GAC74798.1| RNA helicase [Pseudozyma antarctica T-34]
Length = 660
Score = 353 bits (905), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 208/544 (38%), Positives = 306/544 (56%), Gaps = 86/544 (15%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTA-- 87
L+++A LG+ PT IQ++AIPL L KD+L RARTGSGKT A+ +P++QK+++ K
Sbjct: 69 LRSLADLGFGIPTPIQQKAIPLALAGKDILARARTGSGKTLAYGLPLLQKVLDAKAAVAK 128
Query: 88 ---QVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERP 144
+ Q T+ALVL P++EL Q+ +++ + DV+ V+++ VQ LL E+P
Sbjct: 129 SDPKHQLTRALVLVPTRELAEQVFRHLSVVIEYLRDDVRIVNVARDASEKVQRLLLSEKP 188
Query: 145 DIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVL--KFLPKLYQA 202
D+V+ATP++AL++L+ +LDLKS LE + IDEADL+ S+G++ D+K++L FLP +Q+
Sbjct: 189 DVVIATPSKALSYLQNGSLDLKSGLETLAIDEADLILSYGHDSDVKSLLGGSFLPSHFQS 248
Query: 203 ILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKL 262
L SAT++ DV LK L+LRNPV+LKL E A S L ++ E++K ++Y +LKL
Sbjct: 249 FLMSATMTSDVSKLKGLLLRNPVVLKLNETDDAAGSNLVQFYTRTTEEDKFLLVYVILKL 308
Query: 263 NLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIA 322
L++GK I+FVN +++ Y+LKL+LE+F + CVLN+ELP +R V +FN+G +D I+A
Sbjct: 309 KLIRGKAILFVNDLERGYRLKLFLEKFGLRACVLNAELPINSRYSIVEEFNKGKFDYIVA 368
Query: 323 SDEKA---------------------LETPQINSTNNRKR------------KRDK---- 345
+DE E + +ST RK KR+
Sbjct: 369 TDEPTGINQEAEEGSDDESADEGEDVAENAEDDSTKKRKSGAAEGKAAGKKAKREGKKGS 428
Query: 346 ----ESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLM 401
E GVSRG+DF VS VINFD P + YIHR GRTARG GTALSFV +
Sbjct: 429 AGAAEFGVSRGVDFVNVSCVINFDLPTSVDGYIHRVGRTARGGASGTALSFVVPSSE--F 486
Query: 402 NDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFI---IKPYQFNLDEVKGFEYRAKDAWR 458
LS S R +E + + + ++ ++++ V+GF YR D +
Sbjct: 487 GRSKYLSCGSTRR-------DESVFRQIQRRNAAGGELQEWKYDASSVEGFRYRVGDTLK 539
Query: 459 S-------------------------NYFEDNPTDLETLRHDKALYTVRI-QSHLADVPD 492
S +FED+P DL L+HD+AL + R Q HL VP
Sbjct: 540 SITRTLIREARIKELKAELLTSAKLQAHFEDHPDDLAYLQHDRALLSTRSGQQHLKHVPA 599
Query: 493 YIVP 496
Y+ P
Sbjct: 600 YLAP 603
>gi|378733411|gb|EHY59870.1| ATP-dependent RNA helicase dbp9 [Exophiala dermatitidis NIH/UT8656]
Length = 601
Score = 352 bits (903), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 198/539 (36%), Positives = 307/539 (56%), Gaps = 58/539 (10%)
Query: 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII 81
+F L +QA+AK + PT +Q + IPL L+ KD+L +++TGSGKT A+ +P++Q I+
Sbjct: 28 SFGLDPRLMQAVAKANYSAPTPVQAKVIPLALEGKDILAKSKTGSGKTAAYILPILQSIL 87
Query: 82 NLKQTAQVQET-KALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLL 140
K+T+ + L+L P++EL +Q+ K L+ C++DV+ +++++++ +V + +L
Sbjct: 88 RRKKTSPKNKVISTLILVPTRELADQVQKAFVSLSAFCTKDVQSLNLTQRLSDAVLQAVL 147
Query: 141 VERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLY 200
+ PDI+V+TP R +L + + L++ + ++IDEAD+V S+GYEDD+ V LP+
Sbjct: 148 QDSPDIIVSTPGRVTQYLNSGRISLEN-ISHLVIDEADIVLSYGYEDDINTVASLLPRGV 206
Query: 201 QAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLL 260
Q L SATL+ +V LK + R+ ++K++E ++ Y + EDEK ++Y L
Sbjct: 207 QTFLVSATLTPEVEELKGMFCRDATVVKIDEKE-EKGEEITQYVVRCGEDEKFLLIYVLF 265
Query: 261 KLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVI 320
KL LV+GK+IIFV VD+ Y+LKL+LEQF I +CVLN+ELP +R H V +FN+GLYD++
Sbjct: 266 KLRLVKGKSIIFVQDVDRSYRLKLFLEQFGIKSCVLNAELPVNSRLHVVQEFNKGLYDIL 325
Query: 321 IASDEKAL------------------------ETPQINSTNNRKRKRDKESGVSRGIDFQ 356
IA+D++ + T + + +R +K+ GVSRGIDFQ
Sbjct: 326 IAADDQEVLGGIVRRPKTRAHDQENEMSDEDDGTEEHVAKKSRISNNEKDYGVSRGIDFQ 385
Query: 357 FVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQD 416
V+ VINFD P + Y HR GRTAR G ALSFV +++ + T++ E+
Sbjct: 386 NVACVINFDLPQTSKSYTHRIGRTARAGKAGMALSFVIPKDRYGKHKATSIPSAKNDERV 445
Query: 417 LMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS----------------- 459
L E ++ + +KPY F++ +V F YR DA R+
Sbjct: 446 L-----EKIIARQAKKGNEVKPYHFDMAQVDAFRYRMNDALRAVTRAAVHEARAREIKQE 500
Query: 460 --------NYFEDNPTDLETLRHDKALYT-VRIQSHLADVPDYIVPPALKKLARIEDDG 509
+FE+NP DL LRHD VR QSHL VPDY++PP +K ED G
Sbjct: 501 LIKSEKLRKHFEENPEDLRHLRHDGEHSAIVRHQSHLKHVPDYLMPPQGRKGVSAEDIG 559
>gi|358365595|dbj|GAA82217.1| ATP dependent RNA helicase [Aspergillus kawachii IFO 4308]
Length = 617
Score = 352 bits (903), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 208/542 (38%), Positives = 309/542 (57%), Gaps = 72/542 (13%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQT-AQV 89
QA+ K + +PTL+Q +AIPL L KD+L RA+TGSGKT A+ +P++Q I+ K +
Sbjct: 40 QALIKEKFTKPTLVQAKAIPLALAGKDILARAKTGSGKTAAYVLPILQTILQKKAADPSL 99
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ T L+L P++EL Q+ + C +DV+ V+++++V +VQ +L + PDIV++
Sbjct: 100 KATTGLILVPTRELAEQVQNVVTTFAAFCGKDVRSVNLTQKVSEAVQRTMLSDYPDIVIS 159
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TPAR +A+L +L L +L ++IDEADLV S+GY++D+ A+ K +P+ Q L SATL
Sbjct: 160 TPARVIANLGNSSLSL-DNLTHLVIDEADLVLSYGYDEDINALSKAIPRGVQTFLMSATL 218
Query: 210 SEDVLSLKHLILRNPVILKLE--EPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
+ +V +LK L R+PV+LKLE E A VSQ + + EDEK + Y + KL L++G
Sbjct: 219 TSEVDTLKGLFCRSPVVLKLEDKEEKGAGVSQ---FVVKCAEDEKFLLTYVIFKLQLIKG 275
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
K IIFV +D+CY+LKL+LEQF + +CVLNSELP +R H V +FN+G+YD+IIA+D++
Sbjct: 276 KVIIFVGDIDRCYRLKLFLEQFGVKSCVLNSELPVNSRIHVVQEFNKGVYDIIIAADDQE 335
Query: 328 L-----------------------------ETPQINSTNNRKRKR------DKESGVSRG 352
+ E + S +NR KR +K+ G+SRG
Sbjct: 336 VLGSKSKKAKNADADEEEEAAGVMGSSDDEEAEEDKSKSNRPDKRRKLTAKEKDYGISRG 395
Query: 353 IDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSL 412
IDFQ V+ V+NFD P + Y HR GRT RG G ALSFV +Q + T+ +
Sbjct: 396 IDFQNVACVLNFDLPTTAKSYTHRIGRTGRGGKTGMALSFVVPADQYGKHKPTSFP-TAK 454
Query: 413 REQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS------------- 459
++ ++ + + + HE +KPY F + +V F YR D R+
Sbjct: 455 HDEAVLAKIVKRQSKHGHE----VKPYHFEMSQVDAFRYRMTDGLRAITRLAVQEARARE 510
Query: 460 ------------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPPALKKLARIED 507
+FEDNP +L LRHD L + RIQ HL +P+Y++P +K ED
Sbjct: 511 IRQELVKSEKLKRHFEDNPDELRQLRHDGELRSARIQPHLKHIPEYLMPSKGRKGISSED 570
Query: 508 DG 509
G
Sbjct: 571 VG 572
>gi|71019617|ref|XP_760039.1| hypothetical protein UM03892.1 [Ustilago maydis 521]
gi|74701244|sp|Q4P7M1.1|DBP9_USTMA RecName: Full=ATP-dependent RNA helicase DBP9
gi|46099832|gb|EAK85065.1| hypothetical protein UM03892.1 [Ustilago maydis 521]
Length = 686
Score = 351 bits (901), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 215/593 (36%), Positives = 325/593 (54%), Gaps = 91/593 (15%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQT--- 86
L+A+A LG+ PT IQ++AIPL L KD+L RARTGSGKT A+ +P++QK+++ K
Sbjct: 71 LRALADLGYGIPTPIQQKAIPLALAGKDILARARTGSGKTLAYGLPLLQKVLDAKSAVAK 130
Query: 87 --AQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERP 144
A Q T+ALVL P++EL Q+ +++ + D++ V+++ + VQ LL E+P
Sbjct: 131 SDANHQLTRALVLVPTRELAEQVFRHLSVVIEYVRDDIRLVNVAREASEKVQRLLLSEKP 190
Query: 145 DIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVL--KFLPKLYQA 202
D+V+ATP++AL +L+ +LDLKS +E + IDEADL+ S+G++ D+K++L FLP +Q+
Sbjct: 191 DVVIATPSKALNYLQNASLDLKSGMESLAIDEADLILSYGHDADVKSLLGANFLPSHFQS 250
Query: 203 ILASATLSEDVLSLKHLILRNPVILKL-EEPAIAPVSQLAHYHILAQEDEKATILYTLLK 261
L SAT++ DV LK L+LRNPV+LKL + A S L ++ E++K + Y +LK
Sbjct: 251 FLMSATMTSDVSKLKGLLLRNPVVLKLNHDDEAASGSNLVQFYTKTTEEDKFLLAYVILK 310
Query: 262 LNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVII 321
L L++GK I+FVN +++ Y+LKL+LE+F + CVLN+ELP +R V +FN+G +D I+
Sbjct: 311 LKLIRGKAILFVNELERGYRLKLFLEKFGLRACVLNAELPINSRYSIVEEFNKGKFDYIV 370
Query: 322 ASDE------------------------------------------KALETPQINSTNN- 338
A+DE K+ E + +N
Sbjct: 371 ATDEPTGASGNMQDDEGDDEEEDADEREADEVDEQAEDQREAGKKRKSSEHAGAETKSNK 430
Query: 339 ------RKRKRD-KESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALS 391
RK K E GVSRG+DF VS VINFD P + YIHR GRTARG GTALS
Sbjct: 431 SKVSQHRKGKNGASEYGVSRGVDFINVSCVINFDLPTSVDSYIHRVGRTARGGASGTALS 490
Query: 392 FVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEY 451
FV +Q + + R++ + +N+ +L ++ ++++ V GF Y
Sbjct: 491 FVVPSDQ-VGRSKYLYCASTTRDESVFKMLNKPSTISLLGS--ALQEWKYDSSSVAGFHY 547
Query: 452 RAKDAWRS-------------------------NYFEDNPTDLETLRHDKALYTVRI-QS 485
R D +S ++FED+P DL L+HDKAL T R QS
Sbjct: 548 RVTDTLKSITKALIREARIKELKNEILTSSKLQSHFEDHPDDLAFLQHDKALLTSRAQQS 607
Query: 486 HLADVPDYIVPPALKKLARIEDDGDEDVRA----EPITDEEYNKQYEEYKKRS 534
HL VP Y+VP + A++ + + I D +++ + K+RS
Sbjct: 608 HLKHVPQYLVPKIINPGAKLTKSSGSEYKGYVPKNKIKDGANDRKNKGGKRRS 660
>gi|365759353|gb|EHN01145.1| Dbp9p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|401837470|gb|EJT41395.1| DBP9-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 593
Score = 351 bits (901), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 202/548 (36%), Positives = 312/548 (56%), Gaps = 67/548 (12%)
Query: 15 VYFELPFTFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNK-DVLVRARTGSGKTG 70
Y + TF F + LQAI +G+ PTLIQ +IPL LQ K D++ +A TGSGKT
Sbjct: 11 TYIDDSITFESFHLDSRLLQAIKNIGFQNPTLIQSHSIPLALQQKRDIIAKAATGSGKTL 70
Query: 71 AFAIPMIQKIINLKQTAQVQE---TKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDI 127
A+ IP+IQ I+ K+T +E T ++L P++EL Q++ +++L + CS+DV+ ++I
Sbjct: 71 AYLIPVIQTILEYKKTVDNEEENGTLGIILVPTRELAQQVYNVLEKLVLYCSKDVRTLNI 130
Query: 128 SEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLK-SSLEIVIIDEADLVFSFGYE 186
S + SV LL+++P+I+V TP + L L+ K + + ++ ++IDE DLV +FGY+
Sbjct: 131 SSDISDSVLNTLLMDQPEIIVGTPGKLLDLLQTKINSISLNEIKFLVIDEVDLVLTFGYQ 190
Query: 187 DDMKAVLKFLP--KLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAP-VSQLAHY 243
DD+ + ++LP K Q L SATL++D+ LK R+P ILK + I ++L Y
Sbjct: 191 DDLHKIGEYLPLKKNLQTFLMSATLNDDIQVLKQKFCRSPAILKFNDEEINKNQNKLLQY 250
Query: 244 HILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAK 303
++ E +K + Y + KL L++GKT+IFVN +D+ Y+LKL +EQF I +C+LNSELP
Sbjct: 251 YVKVSEFDKFLLCYVIFKLGLIKGKTLIFVNNIDRGYRLKLVMEQFGIKSCILNSELPVN 310
Query: 304 ARCHAVYQFNQGLYDVIIASDE---------------------KALETPQINSTNNRKR- 341
+R H V QFN+ +Y ++IA+D+ + LE N K
Sbjct: 311 SRQHIVDQFNKNVYQLLIATDDTEYIKEEDGDIEEHNGGNEEERNLEAESENGEKPSKEK 370
Query: 342 ----KRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLRE 397
K+DKE GVSRG+DF V+ V+NFD P + Y+HR GRTARG GTA+SFV +
Sbjct: 371 KVQVKKDKEYGVSRGVDFINVACVLNFDLPTTAKSYVHRVGRTARGGKTGTAISFVVPLK 430
Query: 398 QDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAW 457
+ + + L E+ L + + L ++PY+F+ +V+GF YR +D +
Sbjct: 431 EFGKHKQSMLQTAKRDEKILSRIIKQQSKLGLE-----LQPYKFDQKQVEGFRYRMEDGF 485
Query: 458 RS-------------------------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPD 492
R+ +FE+NP +L++LRHDK L+ R+Q HL VPD
Sbjct: 486 RAVTQVAIREARVKELKQELLASEKLKRHFEENPKELQSLRHDKELHPARVQQHLKRVPD 545
Query: 493 YIVPPALK 500
Y++P + +
Sbjct: 546 YLLPESAR 553
>gi|403216467|emb|CCK70964.1| hypothetical protein KNAG_0F03020 [Kazachstania naganishii CBS
8797]
Length = 598
Score = 351 bits (900), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 203/557 (36%), Positives = 318/557 (57%), Gaps = 78/557 (14%)
Query: 15 VYFELPFTFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNK-DVLVRARTGSGKTGAFA 73
V FE +F L LQA+ + G PTL+Q AIPL LQ K D++ +A TGSGKT A+
Sbjct: 18 VTFE---SFQLDARLLQAVKRAGLHHPTLVQSHAIPLALQQKRDIIAKAATGSGKTLAYL 74
Query: 74 IPMIQKIINLKQTA-----QVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDIS 128
+P+IQ I+N K A + T ++L P++EL Q+ ++++ + CS+D+K +++S
Sbjct: 75 VPVIQTILNYKANAPNEADEGSSTLGIILVPTRELAQQVTAVLEKMILFCSKDIKTLNVS 134
Query: 129 EQVDVSVQEPLLVERPDIVVATPARALAHLKAK----TLDLKSSLEIVIIDEADLVFSFG 184
+ SV LL+E+P+I+VATP + L K +LD +L+ +IDEADLV +FG
Sbjct: 135 SDLSASVMTALLLEKPEIIVATPGKLTNLLDTKINYISLD---NLKFFVIDEADLVLTFG 191
Query: 185 YEDDMKAVLKFLP--KLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAI-APVSQLA 241
Y+DD+ + ++LP K Q L SATL++D+ LK R P ILK + I ++L
Sbjct: 192 YQDDLNKIAEYLPLKKNLQTFLMSATLNDDINELKTKFCRAPAILKFNDDNINKDQTKLV 251
Query: 242 HYHILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELP 301
Y++ E +K + Y + KLNL++GKT+IFVN +D+ Y+LKL +EQF I +C+LNSELP
Sbjct: 252 QYYVKTNEFDKFLLCYVIFKLNLIKGKTLIFVNNIDRGYRLKLVMEQFGIKSCILNSELP 311
Query: 302 AKARCHAVYQFNQGLYDVIIASD-----------------------EKALETPQINSTNN 338
+ +R H V QFN+ LY ++IA+D ++ +T + N N
Sbjct: 312 SNSRQHIVDQFNKNLYSLLIATDDTDFLKEGDEGEEQESVEEQTDNQETKDTEEPNKEQN 371
Query: 339 RKR------KRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSF 392
K+ K+DKE GVSRG+DF+ V+ V+NFD P + Y+HR GRTAR GTA+SF
Sbjct: 372 TKKRNHTEVKQDKEYGVSRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGRSGTAISF 431
Query: 393 VSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYR 452
V + +D ++ + R++ + + + + + ++PY F+ +++GF YR
Sbjct: 432 V-VPLKDFGKHKPSMCPTAKRDEKIFSRI----LKQQSKLGLELQPYSFDPKQIEGFRYR 486
Query: 453 AKDAWRS-------------------------NYFEDNPTDLETLRHDKALYTVRIQSHL 487
+D +R+ +FE+NP +L++LRHDK L+ R+Q HL
Sbjct: 487 MEDGFRAVTQVAVREARIKELRQELLASEKLKRHFEENPKELQSLRHDKELHPARVQQHL 546
Query: 488 ADVPDYIVPPALKKLAR 504
VP+Y++P A K+ +
Sbjct: 547 KRVPEYLLPDAAKQGGK 563
>gi|350634532|gb|EHA22894.1| hypothetical protein ASPNIDRAFT_46984 [Aspergillus niger ATCC 1015]
Length = 632
Score = 350 bits (899), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 207/541 (38%), Positives = 309/541 (57%), Gaps = 71/541 (13%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQT-AQV 89
QA+ K + +PT +Q +AIPL L KD+L RA+TGSGKT A+ +P++Q I+ K +
Sbjct: 56 QALIKEKFTKPTPVQAKAIPLALAGKDILARAKTGSGKTAAYVLPILQTILQKKAADPSL 115
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ T L+L P++EL Q+ K + C +DV+ V+++++V +VQ +L + PDIV++
Sbjct: 116 KATTGLILVPTRELAEQVQKVVTTFAAFCGKDVRSVNLTQKVSEAVQRTMLSDYPDIVIS 175
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TPAR +A+L +L L +L ++IDEADLV S+GY++D+ A+ K +P+ Q L SATL
Sbjct: 176 TPARVIANLGNSSLSL-DNLTHLVIDEADLVLSYGYDEDINALSKAIPRGVQTFLMSATL 234
Query: 210 SEDVLSLKHLILRNPVILKLE--EPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
+ +V +LK L R+PV+LKLE E A VSQ + + EDEK + Y + KL L++G
Sbjct: 235 TSEVDTLKGLFCRSPVVLKLEDKEEKGAGVSQ---FVVKCAEDEKFLLTYVIFKLQLIKG 291
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
K IIFV +D+CY+LKL+LEQF + +CVLNSELP +R H V +FN+G+YD+IIA+D++
Sbjct: 292 KVIIFVGDIDRCYRLKLFLEQFGVKSCVLNSELPVNSRIHVVQEFNKGVYDIIIAADDQE 351
Query: 328 L----------------------------ETPQINSTNNRKRKR------DKESGVSRGI 353
+ E + + +NR KR +K+ G+SRGI
Sbjct: 352 VLGSKSKKAKNAGADEEEEAAGVMGSSDDEEAEDDKKSNRPDKRRKLTAKEKDYGISRGI 411
Query: 354 DFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLR 413
DFQ V+ V+NFD P + Y HR GRT RG G ALSFV +Q + T+ +
Sbjct: 412 DFQNVACVLNFDLPTTAKSYTHRIGRTGRGGKTGMALSFVVPADQYGKHKPTSFP-TAKH 470
Query: 414 EQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS-------------- 459
++ ++ + + + HE +KPY F + +V F YR D R+
Sbjct: 471 DEAVLAKIVKRQSKHGHE----VKPYHFEMSQVDAFRYRMTDGLRAITRLAVQEARAREI 526
Query: 460 -----------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPPALKKLARIEDD 508
+FEDNP +L LRHD L + RIQ HL +P+Y++P +K ED
Sbjct: 527 RQELVKSEKLKRHFEDNPDELRQLRHDGELRSARIQPHLKHIPEYLMPSKGRKGISSEDV 586
Query: 509 G 509
G
Sbjct: 587 G 587
>gi|145232376|ref|XP_001399636.1| ATP-dependent RNA helicase dbp9 [Aspergillus niger CBS 513.88]
gi|134034083|sp|A2QCW6.1|DBP9_ASPNC RecName: Full=ATP-dependent RNA helicase dbp9
gi|134056552|emb|CAK37606.1| unnamed protein product [Aspergillus niger]
Length = 616
Score = 350 bits (898), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 207/541 (38%), Positives = 309/541 (57%), Gaps = 71/541 (13%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQT-AQV 89
QA+ K + +PT +Q +AIPL L KD+L RA+TGSGKT A+ +P++Q I+ K +
Sbjct: 40 QALIKEKFTKPTPVQAKAIPLALAGKDILARAKTGSGKTAAYVLPILQTILQKKAADPSL 99
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ T L+L P++EL Q+ K + C +DV+ V+++++V +VQ +L + PDIV++
Sbjct: 100 KATTGLILVPTRELAEQVQKVVTTFAAFCGKDVRSVNLTQKVSEAVQRTMLSDYPDIVIS 159
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TPAR +A+L +L L +L ++IDEADLV S+GY++D+ A+ K +P+ Q L SATL
Sbjct: 160 TPARVIANLGNSSLSL-DNLTHLVIDEADLVLSYGYDEDINALSKAIPRGVQTFLMSATL 218
Query: 210 SEDVLSLKHLILRNPVILKLE--EPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
+ +V +LK L R+PV+LKLE E A VSQ + + EDEK + Y + KL L++G
Sbjct: 219 TSEVDTLKGLFCRSPVVLKLEDKEEKGAGVSQ---FVVKCAEDEKFLLTYVIFKLQLIKG 275
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
K IIFV +D+CY+LKL+LEQF + +CVLNSELP +R H V +FN+G+YD+IIA+D++
Sbjct: 276 KVIIFVGDIDRCYRLKLFLEQFGVKSCVLNSELPVNSRIHVVQEFNKGVYDIIIAADDQE 335
Query: 328 L----------------------------ETPQINSTNNRKRKR------DKESGVSRGI 353
+ E + + +NR KR +K+ G+SRGI
Sbjct: 336 VLGSKSKKAKNAGADEEEEAAGVMGSSDDEEAEDDKKSNRPDKRRKLTAKEKDYGISRGI 395
Query: 354 DFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLR 413
DFQ V+ V+NFD P + Y HR GRT RG G ALSFV +Q + T+ +
Sbjct: 396 DFQNVACVLNFDLPTTAKSYTHRIGRTGRGGKTGMALSFVVPADQYGKHKPTSFP-TAKH 454
Query: 414 EQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS-------------- 459
++ ++ + + + HE +KPY F + +V F YR D R+
Sbjct: 455 DEAVLAKIVKRQSKHGHE----VKPYHFEMSQVDAFRYRMTDGLRAITRLAVQEARAREI 510
Query: 460 -----------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPPALKKLARIEDD 508
+FEDNP +L LRHD L + RIQ HL +P+Y++P +K ED
Sbjct: 511 RQELVKSEKLKRHFEDNPDELRQLRHDGELRSARIQPHLKHIPEYLMPSKGRKGISSEDV 570
Query: 509 G 509
G
Sbjct: 571 G 571
>gi|47228579|emb|CAG05399.1| unnamed protein product [Tetraodon nigroviridis]
Length = 447
Score = 350 bits (897), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 209/505 (41%), Positives = 277/505 (54%), Gaps = 115/505 (22%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+A LGW +PTLIQE+AIPL L+ KD+L RARTGSGKT A+A+P+IQ+I+ KQ+ +
Sbjct: 18 LKAVADLGWSQPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAVPVIQRILASKQSVRE 77
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
Q+ KAL+L P+KEL Q+ I++LT CSR D+ VA
Sbjct: 78 QDVKALILVPTKELGQQVQTMIRQLTAYCSR------------------------DVRVA 113
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
I +ADL + LPK+YQ+ L SATL
Sbjct: 114 D----------------------ISGKADL-----------STQSHLPKIYQSFLMSATL 140
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
SEDV SLK L+L NPVILKL+ + SQL Y I +E++K ++YTLLKL LVQGKT
Sbjct: 141 SEDVQSLKELLLHNPVILKLQGSQLPDSSQLQQYSIKCEEEDKFLLIYTLLKLRLVQGKT 200
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
++FV VD+ Y+LKL+LEQF I +CVLNSELP +RCH + QFNQG YD IIA+DE++L
Sbjct: 201 LLFVGAVDRSYRLKLFLEQFGIPSCVLNSELPVGSRCHIISQFNQGFYDYIIAADEQSLA 260
Query: 330 TPQINSTN---------------NRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYI 374
P + + + + +DKE GVSRG+DFQ VSNVINFDFP ++ YI
Sbjct: 261 VPAVGAASADVTATKGKKKKTPDKGGKSKDKEFGVSRGVDFQNVSNVINFDFPTTVESYI 320
Query: 375 HRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDF 434
HR GR R A +S T R + L D
Sbjct: 321 HRVGRNGRRGGTTPARLCLSY--------PTKRWICCQRWRKLSQD----------HSGS 362
Query: 435 IIKPYQFNLDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDL 469
++KPY+F ++E++GF YR +DA RS YFEDNP DL
Sbjct: 363 VLKPYEFKMEEIEGFRYRCRDAMRSVTKQAVKEARLKEIKQELLNSEKLKTYFEDNPRDL 422
Query: 470 ETLRHDKALYTVRIQSHLADVPDYI 494
+ LRHDK L+ ++ HL ++PDY+
Sbjct: 423 QLLRHDKDLHPAVVKPHLRNLPDYL 447
>gi|402083785|gb|EJT78803.1| ATP-dependent RNA helicase DBP9 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 616
Score = 350 bits (897), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 200/520 (38%), Positives = 294/520 (56%), Gaps = 66/520 (12%)
Query: 41 PTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQET-KALVLSP 99
PTL+Q +AIPL+L KDVL +A+TGSGKT A+ +P++Q I+ KQ + AL+L P
Sbjct: 52 PTLVQSKAIPLVLDGKDVLAKAKTGSGKTAAYVLPILQAILKRKQINNGDASIAALILVP 111
Query: 100 SKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVER-PDIVVATPARALAHL 158
++EL Q+ K +++ + C++D++ V +++++ SVQ LL+ PD++V+TP+ A ++
Sbjct: 112 TRELAVQVTKEVEKFSAFCAKDIQVVGLTDKLSASVQRSLLLSNSPDVIVSTPSTAWHNI 171
Query: 159 KAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKH 218
++ L L L +++DEADLV S+GY DD++ V + LPK Q ++ SATL++++ SLK
Sbjct: 172 ESSALAL-DKLTHLVLDEADLVLSYGYSDDLEKVAQALPKGVQTVMTSATLTDEIDSLKG 230
Query: 219 LILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDK 278
L LR+ V+L LEEP A S Y + EDEK + Y + KL L++GK IIFV VD+
Sbjct: 231 LFLRDSVMLDLEEPD-AEGSGATQYVVKCGEDEKFLLAYIMFKLKLIKGKVIIFVGDVDR 289
Query: 279 CYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL---------- 328
CY+LKL+ EQF I +C+LNSELP +R V +FN+ +YD+IIASDE +
Sbjct: 290 CYRLKLFFEQFGIRSCILNSELPVNSRISVVEEFNRNVYDIIIASDENEILGDEDVGEGS 349
Query: 329 ------------------ETPQINSTNNRKR---KRDKESGVSRGIDFQFVSNVINFDFP 367
P+ + ++R KRDK+ GVSRGIDF+ V+ V+NFD P
Sbjct: 350 NKVEAESGDKAGDADEGDSKPKGSRPKKKRRTGPKRDKQYGVSRGIDFKNVAVVVNFDLP 409
Query: 368 LDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMT 427
L Y HR GRTAR G LSF +E + T++ E+ L V +
Sbjct: 410 LTATSYTHRIGRTARAGQTGMVLSFYVPKELFRKHIPTSIDSAEKDEKVLARIVKQQAKL 469
Query: 428 NLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS-------------------------NYF 462
+KPY F+ D+V+GF YR DA R+ +F
Sbjct: 470 GRE-----LKPYHFDRDQVEGFRYRMNDALRAVTKVAVREARTRELRQELLKSEKLKRHF 524
Query: 463 EDNPTDLETL-RHDKALYTVRIQSHLADVPDYIVPPALKK 501
E+NP +L+ L RHD L T R L VPDY++P +K
Sbjct: 525 EENPAELQHLARHDSELRTARANPELRHVPDYLLPKEGRK 564
>gi|345568976|gb|EGX51845.1| hypothetical protein AOL_s00043g579 [Arthrobotrys oligospora ATCC
24927]
Length = 621
Score = 349 bits (896), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 200/562 (35%), Positives = 307/562 (54%), Gaps = 92/562 (16%)
Query: 20 PFTFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPM 76
P +FT + LQAIA L + PT +Q+ IP L+ KD+L RA+TGSGKT A+ +P+
Sbjct: 12 PTSFTSLPLDPRLLQAIATLNYSTPTPVQQSVIPPALEGKDILARAKTGSGKTAAYLLPI 71
Query: 77 IQKIINLKQ--------------TAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDV 122
+ +I+ +Q T+AL+L P++EL +Q++K I++ T C + +
Sbjct: 72 LHRILTSQQDVNNANSNDGEGGSGGSAAATEALILVPTRELADQVYKVIEQYTTFCGKQI 131
Query: 123 KCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFS 182
V+I+ + S+Q+ LL+ P IV++TP+RA H +TL L+S L+ ++IDEADL+ S
Sbjct: 132 TAVNIARNISDSIQQSLLLSHPKIVISTPSRAAIHFNTETLSLES-LKYLVIDEADLILS 190
Query: 183 FGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILK---LEEPAIAPVSQ 239
+G+E+DM+ + LPK Q L SATL++DV L+ L R+P + K EE
Sbjct: 191 YGHENDMQVLSGALPKGIQTFLMSATLTDDVEGLQKLFCRHPFVYKPDAKEEDGADGAEV 250
Query: 240 LAHYHILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSE 299
+ ++I ED K +LY + KL L++GK+IIFV VD+CY+L+L+LEQF I CVLNSE
Sbjct: 251 VKQFYISTGEDTKFLLLYVIFKLKLIKGKSIIFVADVDRCYRLRLFLEQFGIRACVLNSE 310
Query: 300 LPAKARCHAVYQFNQGLYDVIIASDEKAL---------------------------ETPQ 332
LP +R H V +FN+ +Y++IIA+DE +
Sbjct: 311 LPVNSRLHIVQEFNKNVYEIIIATDENEIMGDEEEEEEDDDDEVEEGQAAGEDGDTTMEG 370
Query: 333 INSTNNR--------------KRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAG 378
+ S N RKRD E GVSRG+DFQ V+ V+NFD P+ + Y+HR G
Sbjct: 371 MESEGNPPPKKKKKSKRKSSTHRKRDTEYGVSRGVDFQNVTCVLNFDLPVTSKSYMHRIG 430
Query: 379 RTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKP 438
RTAR N G ALSF + + T+++ S++++ ++ + + E +KP
Sbjct: 431 RTARAGNSGMALSFYVPKPLYGKHRPTSVA-SSVKDEKVLERIKKQQAKLGRE----LKP 485
Query: 439 YQFNLDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLR 473
Y F++ +++ F YR DA R+ +FE+NP DL LR
Sbjct: 486 YNFDMKQLEAFRYRMDDALRAVTKVAVQNARMKELRAELVASEKLKRHFEENPEDLRHLR 545
Query: 474 HDKALYTVRIQSHLADVPDYIV 495
HD+ + VR+Q H+ VP+Y++
Sbjct: 546 HDREIKVVRVQQHMKRVPEYLL 567
>gi|453085376|gb|EMF13419.1| P-loop containing nucleoside triphosphate hydrolase protein
[Mycosphaerella populorum SO2202]
Length = 634
Score = 349 bits (895), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 204/541 (37%), Positives = 302/541 (55%), Gaps = 76/541 (14%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQ-TAQ 88
LQ++ K + PTL+Q + IPL L +KDVL RA+TGSGKT A+ +P + I+ K T +
Sbjct: 45 LQSVHKQKFSAPTLVQSKTIPLALASKDVLARAKTGSGKTLAYLLPTVHAILQRKSGTKK 104
Query: 89 VQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
V+ T AL+L P+KEL Q+ +++E+T C+ +VKC +I+ + D SV L E PDIVV
Sbjct: 105 VKSTTALILVPTKELATQVTNSVKEVTTFCAAEVKCENITRKEDPSVTRARLAELPDIVV 164
Query: 149 ATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
ATPARA+ + ++T+ L+ L+ +IIDEADLV S+ EDD++A+ LP+ Q ++ SAT
Sbjct: 165 ATPARAIQWVNSETMKLEG-LKHLIIDEADLVLSYDGEDDLRALANLLPEGVQKLMMSAT 223
Query: 209 LSEDVLSLKHLIL---RNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLV 265
L +V +L L P IL L + + LA Y + EDEK ++Y + KL L+
Sbjct: 224 LRTEVDTLTALFFAEDSKPEILDLSQEEAKEKATLAQYTVRTAEDEKFLLIYAIFKLQLI 283
Query: 266 QGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE 325
+GK I+FV +D+ Y++KL+LEQF I +CVLN+ELP +R H V +FN+G+YD+IIA+DE
Sbjct: 284 KGKVIVFVADIDRGYRVKLFLEQFGIRSCVLNAELPVNSRLHVVEEFNKGVYDIIIAADE 343
Query: 326 ----------KALETPQI-------------------------NSTNN------RKRKRD 344
K+ E+ ++ NS+N R+ ++D
Sbjct: 344 SEVVGNEDGKKSKESERVAEEDEDEDEVEPDGAEAETEPVTTENSSNTRPVKKQRRSRKD 403
Query: 345 KESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDG 404
+E GVSRGIDF+ V+ V+NFD P + + Y HR GRTAR G ALSF + +
Sbjct: 404 REYGVSRGIDFRHVTCVLNFDLPTNNKSYTHRIGRTARAGQSGMALSFYVPKSLYRKHKP 463
Query: 405 TALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS----- 459
T++ E+ L ++ + +K + + ++ GF YR DA RS
Sbjct: 464 TSIEQCEHDEEVLAK-----IVAKQADQGSEVKEWGIDWTKLDGFRYRLVDALRSVTRIA 518
Query: 460 --------------------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPPAL 499
+FE+NP DL+ LRHD + VR Q+HL VPDY++P
Sbjct: 519 VREARTKEIRNELVKSEKLKRHFEENPEDLKHLRHDTESHAVRAQAHLKHVPDYLLPQGG 578
Query: 500 K 500
K
Sbjct: 579 K 579
>gi|342874553|gb|EGU76555.1| hypothetical protein FOXB_12929 [Fusarium oxysporum Fo5176]
Length = 614
Score = 348 bits (894), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 200/520 (38%), Positives = 292/520 (56%), Gaps = 61/520 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQAIA+ + +PTL+Q +AIPL L +DVL +A GSGKT A+ +P++ I+ K T
Sbjct: 52 LQAIAQQKFAKPTLVQRKAIPLALNGQDVLAKADCGSGKTAAYVLPLLSSILKRKATDST 111
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T AL+L P++EL +Q+ K I++ C++D+ V ++++V +VQ LL PDIV++
Sbjct: 112 AFTTALILVPTRELADQVFKAIEQFASFCAKDISTVKLTDKVSNAVQRALLSNSPDIVIS 171
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TPA A + + L + L +I+DEADLV S+GY +D++ + + +PK Q ++ SATL
Sbjct: 172 TPATAWHNANSSALSI-DKLTHLILDEADLVLSYGYSEDLENLSRSVPKGIQVMMMSATL 230
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+++V +LK + R+P +L L+E A + + EDEK + Y + KL L++GK
Sbjct: 231 TDEVDALKGIFRRDPTLLDLKEKE-AEGEGITQFVAKCGEDEKFLLAYVIFKLKLIKGKC 289
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL- 328
IIFV+ +D+CY+LKL+ EQF I +C+LNSELP +R H V +FN+ +YD+IIA+DEK
Sbjct: 290 IIFVSDIDRCYRLKLFFEQFGIRSCILNSELPLNSRVHVVEEFNKHVYDIIIAADEKNEM 349
Query: 329 ----ETPQINSTNNRKRKRD----------------------KESGVSRGIDFQFVSNVI 362
E P T + +++ D KE GVSRG+DF+ VS VI
Sbjct: 350 MGDDEEPVEGETEDAEKQGDGDDAETEAKRPKKKAKKSKGGDKEYGVSRGVDFKKVSAVI 409
Query: 363 NFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSF-VSLREQDLMNDV 421
NFD P Y HR GRTAR G ALSFV +DL S S ++ +M +
Sbjct: 410 NFDLPTTASAYTHRIGRTARAGQTGMALSFVV--PKDLYRKHMPTSTPASENDEKVMAKI 467
Query: 422 NEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS---------------------- 459
E +KPY FN+ +V F YR DA R+
Sbjct: 468 IRQQAKRGKE----VKPYNFNMKQVDPFRYRMNDALRAVTKVSIREARTRELRQELLKSE 523
Query: 460 ---NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVP 496
YFE+NPT+L LRHD L T R Q+HL +P+Y++P
Sbjct: 524 KLKRYFEENPTELTHLRHDGELRTARQQAHLKHIPEYLLP 563
>gi|254573594|ref|XP_002493906.1| hypothetical protein [Komagataella pastoris GS115]
gi|238033705|emb|CAY71727.1| hypothetical protein PAS_chr4_0966 [Komagataella pastoris GS115]
gi|328354273|emb|CCA40670.1| RNA helicase [Komagataella pastoris CBS 7435]
Length = 601
Score = 348 bits (893), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 211/563 (37%), Positives = 309/563 (54%), Gaps = 85/563 (15%)
Query: 14 QVYFELPFTFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNK-DVLVRARTGSGKT 69
+ Y + TF F + LQAI +LG+ PTL+Q +AIPL LQ K DV+ +A TG+GKT
Sbjct: 9 EAYVDNSTTFDSFGLDPRILQAINELGYEHPTLVQAKAIPLALQEKRDVIAKASTGTGKT 68
Query: 70 GAFAIPMIQKII-NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDIS 128
A+ IP++Q I+ N +T +Q A++L P++EL Q+ K + LT CS+ VKC+++S
Sbjct: 69 AAYCIPILQSILSNNNRTPGIQ---AVILVPTRELSVQVDKFLDSLTSFCSKKVKCLNLS 125
Query: 129 EQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDD 188
V + L E P+IV++TP + L LK + S L+ +IDE DL+FS+GY+DD
Sbjct: 126 NSVSEQIHLAQLSELPEIVISTPTKLLQLLKKSSKVNLSQLKYFVIDEVDLIFSYGYDDD 185
Query: 189 MKAVLKF---LPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHI 245
+K + + L Q L SAT++EDV LK L + P +LKL + AI S L Y+
Sbjct: 186 LKELTELYLNLQNKIQVFLMSATMNEDVEQLKALYCKAPAVLKLNDDAIKS-SNLVQYYC 244
Query: 246 LAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKAR 305
E EK + Y + KLNL++GKT+IFVN +D+ Y+LKL+LEQF I +C+LN+ELP +R
Sbjct: 245 KTGELEKFLLSYVIFKLNLIKGKTLIFVNNIDRGYRLKLFLEQFGIKSCLLNNELPLSSR 304
Query: 306 CHAVYQFNQGLYDVIIASDEKAL---------------------ETPQINSTNNR----- 339
H V QFN+ +Y ++IA+DE ++ + + ST N
Sbjct: 305 MHTVDQFNKNVYRLLIATDESSVGEEREEDFLEEANETETNADEKVAEKKSTENNTEKTE 364
Query: 340 -----------------KRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTAR 382
K + ++SG SRG+DF+ V+ V+NFD P + Y+HR GRTAR
Sbjct: 365 ENEDGEEEIEEEEKINSKSSKQRDSGFSRGVDFKNVACVLNFDLPTTAKSYVHRVGRTAR 424
Query: 383 GKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFN 442
G ALSFV E+ L N A + S + + + +MT ++PY FN
Sbjct: 425 AGKSGMALSFVV--EKRLWNKHIASNLKSAKRDE---KILARIMTAQGRIGSKLEPYHFN 479
Query: 443 LDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKA 477
+V+GF YR +DA+R+ +FE+NP DL +LRHDK
Sbjct: 480 ESQVEGFRYRMEDAFRAVTATAIRNARIKEIKQEIMVNEKLQRHFEENPQDLLSLRHDKE 539
Query: 478 LYTVRIQSHLADVPDYIVPPALK 500
L+ R+Q HL VPDY++P +
Sbjct: 540 LHPNRVQPHLKRVPDYLLPKGAR 562
>gi|443924692|gb|ELU43680.1| ATP-dependent RNA helicase DBP9 [Rhizoctonia solani AG-1 IA]
Length = 617
Score = 348 bits (893), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 215/578 (37%), Positives = 317/578 (54%), Gaps = 108/578 (18%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+A LG+ PTL+Q +AIPL L+ +D+L RARTGSGKT A+ IP+ QKI+N K A
Sbjct: 25 LRALADLGFARPTLVQSKAIPLALEGRDILARARTGSGKTAAYCIPVAQKILNSKTIANA 84
Query: 90 QET-KALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
Q+ +A++L P++EL +Q+ K+++ L C +D+K V+I+ Q+ ++ E+PD++V
Sbjct: 85 QQAARAVILVPTRELADQVTKHLKGLLAYCDKDIKAVNIAGGASGYTQKLIIAEKPDLIV 144
Query: 149 ATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLK--FLPKLYQAILAS 206
ATP+R LA L+ K L L S +VI DEADL+ S+G+++D+K +L LPKLYQ L S
Sbjct: 145 ATPSRLLALLRVKALSLSSLESLVI-DEADLILSYGHDEDVKQILSGGHLPKLYQTFLMS 203
Query: 207 ATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQ 266
AT+++DV +LK + ILKLEE + L Y + E +K + Y +LKL LV+
Sbjct: 204 ATMTKDVETLKGI-----AILKLEEDK-DEAANLTQYAVKCSEVDKFLLTYVILKLKLVK 257
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLY--------- 317
GK +IFVN VD+ Y++KL+LEQF I +CVLNSELP +R H V +FN+G+Y
Sbjct: 258 GKCLIFVNDVDRGYRVKLFLEQFSIKSCVLNSELPLNSRFHIVQEFNKGVYDYIIATDET 317
Query: 318 ------------------------------DVIIASDEKALETPQIN------------- 334
D+I +A E N
Sbjct: 318 GGKHEDQDTDDEKEAEEEEVGSEAEAEGGEDLITTEPTEAGEAGPSNPPPKRKRAPPQPE 377
Query: 335 ----STNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTAL 390
S +R K+DKE GVSRGIDF V+ V+NFD P + Y HR GRTAR G AL
Sbjct: 378 SQKPSKKHRTAKKDKEFGVSRGIDFVDVACVLNFDLPRSSRAYTHRVGRTARAGRSGMAL 437
Query: 391 SFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFI----IKPYQFNLDEV 446
SFV +E+ LS S ++ +E + + ++ +K Y F++ +V
Sbjct: 438 SFVVPKEE--FGKDKVLSCAS-------SERDEIVFARIEKEQGARGSKVKDYVFDMAQV 488
Query: 447 KGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKALYTV 481
+ F YR +DA R+ +FE+NP DLE +RHDK+L+
Sbjct: 489 EAFRYRMEDALRAVTKSAVREARVKELKTELLNSEKLKTHFEENPLDLEYIRHDKSLHPT 548
Query: 482 RIQSHLADVPDYIVPPALKKLARIEDDGDEDVRAEPIT 519
R+Q+H+ VP Y++P ++A + ++ +DV P T
Sbjct: 549 RVQAHMKHVPKYLMP----RIASVAEEPAKDVGFVPFT 582
>gi|46111741|ref|XP_382928.1| hypothetical protein FG02752.1 [Gibberella zeae PH-1]
gi|91206554|sp|Q4IJ56.1|DBP9_GIBZE RecName: Full=ATP-dependent RNA helicase DBP9
Length = 615
Score = 348 bits (893), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 203/534 (38%), Positives = 296/534 (55%), Gaps = 62/534 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQAIA+ + +PTL+Q +AIPL L +DVL +A GSGKT A+ +P++ I+ K T
Sbjct: 52 LQAIAQQKFAKPTLVQRKAIPLALNGQDVLAKADCGSGKTAAYVLPLLSSILKRKATDST 111
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T AL+L P++EL +Q+ K I++ C++D+ ++++V VQ LL PDIV++
Sbjct: 112 AFTTALILVPTRELADQVSKAIEQFASFCAKDISTAKLTDKVSSKVQRALLSNSPDIVIS 171
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP+ A ++ + L + L +I+DEADLV S+GY +D++ + + +PK Q ++ SATL
Sbjct: 172 TPSTAWQNVNSSALSI-DKLTHLILDEADLVLSYGYSEDLENLSRSVPKGVQVMMMSATL 230
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
S++V +LK + R+P +L L+E A + + EDEK + Y + KL L++GK
Sbjct: 231 SDEVDTLKGIFRRDPTLLDLKEKE-AEGEGITQFVAKCGEDEKFLLAYVIFKLKLIKGKC 289
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK--- 326
IIFV+ +D+CY+LKL+ EQF I +C+LNSELP +R H V +FN+ +YD+IIA+DEK
Sbjct: 290 IIFVSDIDRCYRLKLFFEQFGIRSCILNSELPLNSRVHVVEEFNRHVYDIIIAADEKNEM 349
Query: 327 ------ALETPQINSTNNRKRKRD--------------------KESGVSRGIDFQFVSN 360
ET + + + D KE GVSRG+DF+ VS
Sbjct: 350 LGDDEEPAETAEAQDDAKKSNEGDDAETEAKRPKKKAKKSKGGDKEYGVSRGVDFKKVSA 409
Query: 361 VINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMND 420
VINFD P Y HR GRTAR G ALSFV +DL S + E D
Sbjct: 410 VINFDLPTTASAYTHRIGRTARAGQTGMALSFVV--PKDLYRKHMPTSTPAC-END--EK 464
Query: 421 VNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS--------------------- 459
+ ++ + D +KPY FN+ +V F YR DA R+
Sbjct: 465 IMARIIRQQAKRDKEVKPYNFNMKQVDPFRYRMNDALRAVTKVAIREARTRELRQELLKS 524
Query: 460 ----NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPPALKKLARIEDDG 509
YFE+NPT+L LRHD L T R Q+HL +P+Y++P K+ A ED G
Sbjct: 525 EKLKRYFEENPTELSHLRHDGELRTARQQAHLKHIPEYLMPKDGKQ-ALTEDVG 577
>gi|401624490|gb|EJS42546.1| dbp9p [Saccharomyces arboricola H-6]
Length = 594
Score = 347 bits (889), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 198/539 (36%), Positives = 310/539 (57%), Gaps = 65/539 (12%)
Query: 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNK-DVLVRARTGSGKTGAFAIPMIQKI 80
+F L LQAI +G+ PTLIQ +IPL LQ K D++ +A TGSGKT A+ IP+IQ I
Sbjct: 21 SFHLDSRLLQAIKNIGFQNPTLIQSHSIPLALQEKRDIIAKAATGSGKTLAYLIPVIQTI 80
Query: 81 INLKQTAQVQE---TKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQE 137
+ K+T E T ++L P++EL Q++ +++L + CS+D++ ++IS + V
Sbjct: 81 LEYKKTIANDEENGTLGIILVPTRELAQQVYNVLEKLILYCSKDIRSLNISSDMSGPVLS 140
Query: 138 PLLVERPDIVVATPARALAHLKAKTLDLK-SSLEIVIIDEADLVFSFGYEDDMKAVLKFL 196
LL+++P+I+V TP + L L+ K + + L+ +++DE DLV +FGY+DD+ + ++L
Sbjct: 141 TLLMDQPEIIVGTPGKLLDLLQTKIDSISLNDLKFLVVDEVDLVLTFGYQDDLDKIGEYL 200
Query: 197 P--KLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAP-VSQLAHYHILAQEDEKA 253
P K Q L SATL++++ +LK R+P ILK + I ++L Y++ E +K
Sbjct: 201 PLKKKLQTFLMSATLNDEIQTLKQKFCRSPAILKFNDEEINKNQNKLLQYYVKVSEFDKF 260
Query: 254 TILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFN 313
Y + KL L++GKT+IFVN +D+ Y+LKL +EQF I +C+LNSELP +R H V QFN
Sbjct: 261 LFCYVIFKLGLIKGKTLIFVNNIDRGYRLKLVMEQFGIKSCILNSELPINSRQHIVDQFN 320
Query: 314 QGLYDVIIASD----------------------EKALETPQINSTNNRKRKR-----DKE 346
+ +Y ++IA+D +K L T N K+K+ DKE
Sbjct: 321 KNVYQLLIATDDTEYIKEEDEDIGEEHSSQNEEDKNLGTETENGQAPSKKKKIQVKEDKE 380
Query: 347 SGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTA 406
GVSRG+DF+ V+ V+NFD P + Y+HR GRTARG GTA+SFV ++ + +
Sbjct: 381 YGVSRGVDFKNVACVLNFDLPTTAKSYVHRVGRTARGGKTGTAISFVVPLKEFGKHKPSM 440
Query: 407 LSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS------- 459
L E+ L + + L ++PY+F+ ++V+GF YR +D +R+
Sbjct: 441 LQTAKRDEKILSRIIKQQSKLGLE-----LQPYRFDQEQVEGFRYRMEDGFRAVTQVAIR 495
Query: 460 ------------------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPPALK 500
+FE+NP +L++LRHDK L+ R+Q HL VPDY++P + +
Sbjct: 496 EARVKELKQELLASEKLKRHFEENPKELQSLRHDKELHPARVQQHLKRVPDYLLPESAR 554
>gi|302884336|ref|XP_003041064.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256721960|gb|EEU35351.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 607
Score = 346 bits (888), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 198/516 (38%), Positives = 294/516 (56%), Gaps = 56/516 (10%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+A+ + +PTL+Q +AIPL L +DVL +A GSGKT A+ +P++ I+ K T
Sbjct: 49 LQAVAQQKFAKPTLVQRKAIPLALNGQDVLAKADCGSGKTAAYVLPLLSSILKRKTTDST 108
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T AL+L P++EL +Q+ K I++ C++D+ V ++++V +VQ LL PDIV++
Sbjct: 109 AFTSALILVPTRELADQVFKAIEQFASFCAKDISTVKLTDKVSNAVQRALLSNSPDIVIS 168
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TPA A ++ + L L L +++DEADLV S+GY +D++ + + +PK Q ++ SATL
Sbjct: 169 TPATAWHNVNSSALSL-DKLTHLVLDEADLVLSYGYSEDLENLSRSVPKGVQVMMMSATL 227
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+++V +LK + R+P +L L+E A + + EDEK + Y + KL L++GK
Sbjct: 228 TDEVDTLKGIFRRDPTLLDLKEKE-AEGEGITQFVAKCGEDEKFLLAYVIFKLRLIKGKC 286
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK--- 326
IIFV+ +D+CY+LKL+ EQF I +C+LNSELP +R H V +FN+ +YD+IIA+DEK
Sbjct: 287 IIFVSDIDRCYRLKLFFEQFGIRSCILNSELPLNSRVHVVEEFNRNVYDIIIAADEKNDM 346
Query: 327 ---------------------ALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFD 365
A + +K K DKE GVSRG+DF+ VS VINFD
Sbjct: 347 LGDDEVAEGEEAKEKAEGDDDAEVEAKRPKKKAKKSKGDKEYGVSRGVDFKKVSAVINFD 406
Query: 366 FPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYL 425
P Y HR GRTAR G ALSFV +E + T+ + +++ +M +
Sbjct: 407 LPTTASSYTHRIGRTARAGQTGMALSFVVPKELYRKHVPTSTP-TAEKDEKVMAKIIRQQ 465
Query: 426 MTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS-------------------------N 460
E +KPY FN+++V F YR DA R+
Sbjct: 466 AKRGKE----VKPYNFNMEQVDPFRYRMNDALRAVTKVAIREARTRELRQELLKSEKLKR 521
Query: 461 YFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVP 496
YFE+NPT+L LRHD L T R Q+HL VP+Y++P
Sbjct: 522 YFEENPTELTHLRHDGELRTARQQAHLKHVPEYLLP 557
>gi|255727326|ref|XP_002548589.1| hypothetical protein CTRG_02886 [Candida tropicalis MYA-3404]
gi|240134513|gb|EER34068.1| hypothetical protein CTRG_02886 [Candida tropicalis MYA-3404]
Length = 605
Score = 346 bits (888), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 206/525 (39%), Positives = 308/525 (58%), Gaps = 56/525 (10%)
Query: 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNK-DVLVRARTGSGKTGAFAIPMIQKI 80
+F L LQAI +LG+ PTLIQ AIPL L+ K D++ +A TGSGKT A++IP++
Sbjct: 54 SFNLDPRLLQAIDQLGFANPTLIQSSAIPLALEEKRDIIAKASTGSGKTAAYSIPIVN-- 111
Query: 81 INLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLL 140
NL + K++VL P++EL NQ+ + I++L + + +++S V LL
Sbjct: 112 -NLLTDGDSEGIKSIVLVPTRELSNQVFQFIEKLLSFSNNKINVLNLSSNYSDQVLNSLL 170
Query: 141 VERPDIVVATPARALAHLKA--KTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLP- 197
V +PDI+++TPA+ + L+ K +DL S+++ + IDE DLV SFGY DD+K + +LP
Sbjct: 171 VNKPDIIISTPAKLIQILEKNEKNVDL-STVKNLTIDEVDLVLSFGYMDDLKKLENYLPI 229
Query: 198 -KLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATIL 256
K Q L SAT+++D+ LK P ILKL + A A ++L Y+ E +K +
Sbjct: 230 KKNLQTFLMSATVNDDLEDLKKRYCTKPAILKLNDDA-ANQNKLVQYYAKTTEFDKFLLA 288
Query: 257 YTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGL 316
Y + KLNL++GKTI+FVN +D+ Y+LKL+LEQF I C+LNSELP +R H V +FN+ +
Sbjct: 289 YVIFKLNLIKGKTIVFVNNIDRGYRLKLFLEQFGIRCCILNSELPINSRLHIVEEFNKNV 348
Query: 317 YDVIIASDE----------------KALETPQINSTNNRKRKRDKESGVSRGIDFQFVSN 360
Y ++IA+DE +A P + K K+DKE GVSRG+DF+ V+
Sbjct: 349 YHLLIATDETNELNEEKDEDDIDEDQADGEPAAKKSKKSKFKQDKEYGVSRGVDFRNVAC 408
Query: 361 VINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMND 420
V+NFD P + YIHR GRTAR G ALSFV L + TA + +++ ++
Sbjct: 409 VLNFDLPTSSKAYIHRIGRTARAGKAGMALSFV-LPLSEFGKHKTATLSTAKKDEKVLRR 467
Query: 421 VNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS--------------------- 459
+ + ++ F IKPYQF++++V+GF YRA DA+R+
Sbjct: 468 I----VKQQSKNGFEIKPYQFDMNQVEGFRYRADDAFRAVTQTSIREARVKELKNELINS 523
Query: 460 ----NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPPALK 500
+FE+NP DL +LRHDK L+ RIQ+ L +VP Y++P + +
Sbjct: 524 EKLKRFFEENPQDLASLRHDKELHPTRIQTQLKNVPQYLLPESAR 568
>gi|428171692|gb|EKX40607.1| hypothetical protein GUITHDRAFT_46656, partial [Guillardia theta
CCMP2712]
Length = 525
Score = 346 bits (887), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 196/502 (39%), Positives = 288/502 (57%), Gaps = 54/502 (10%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII---NLKQTA 87
+AIA +GW +PTLIQ +AIPL LQ KD+L +A+TGSGKTGA+A+P++QKI+ +
Sbjct: 7 KAIAHMGWQQPTLIQTQAIPLALQGKDILAKAKTGSGKTGAYALPILQKILQSEGYNKNT 66
Query: 88 QVQETK--ALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPD 145
+++ + A+VL P++EL Q+ + EL V I+ ++ Q+ +L+ +P
Sbjct: 67 RIERSGPVAVVLVPTRELVEQVRQVFSELCFFVP-SVTLAAITADQSLAAQKSILLTKPH 125
Query: 146 IVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILA 205
+++ATP+R H+K + L+ S E++++DEADL+ SFG+ED++K++ LP + Q +L
Sbjct: 126 VLIATPSRLDQHVKLDNVLLRESTEMIVLDEADLLLSFGFEDEIKSIAGSLPNICQCMLM 185
Query: 206 SATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLV 265
SATLSED L+ L++ NPV LK E+ A +LA + + + +K I Y LLKL ++
Sbjct: 186 SATLSEDTEKLQALVMNNPVTLKAEDNESAQ-GRLAQFSLRCSQRDKFLISYVLLKLGIL 244
Query: 266 QGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE 325
QGK + FVN VD+CY+LKL+LEQF I VLNSELP +R + FN+G Y+ +E
Sbjct: 245 QGKVLFFVNDVDRCYELKLFLEQFSIRAAVLNSELPQNSRMSIIQGFNRGFYNYEEEEEE 304
Query: 326 KALETPQINSTNNRKR-KRD-KESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARG 383
+ + K KRD + GV RG+DF+ V V+NF+ P ++ Y HR GRTAR
Sbjct: 305 ASEDDESEEEEVEEKTGKRDLDDYGVMRGVDFKLVDAVVNFELPRTLRAYTHRVGRTARA 364
Query: 384 KNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNL 443
GTALS VS E R + L E M +I+P FNL
Sbjct: 365 GQNGTALSLVSPEEVG-------------RLEGLAGKQAERGMQ-------VIEPLPFNL 404
Query: 444 DEVKGFEYRAKDAWR-------------------------SNYFEDNPTDLETLRHDKAL 478
+V+GF YRA+D+ R +F+ NP DL LRHD+ L
Sbjct: 405 QQVEGFRYRAEDSLRRVTKLAIKRARLREIESELLNSKTLKEHFQHNPQDLRALRHDRTL 464
Query: 479 YTVRIQSHLADVPDYIVPPALK 500
R +HLA VPDY++PP+L+
Sbjct: 465 APNRQMAHLAKVPDYLLPPSLR 486
>gi|452843615|gb|EME45550.1| hypothetical protein DOTSEDRAFT_52793 [Dothistroma septosporum
NZE10]
Length = 644
Score = 345 bits (886), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 204/555 (36%), Positives = 295/555 (53%), Gaps = 90/555 (16%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQT-AQ 88
LQA+ + PT +Q +AIPL ++ KDVL RA+TGSGKT A+ +P I I+ K +
Sbjct: 41 LQAVNNSKFSAPTPVQVKAIPLAIEGKDVLARAKTGSGKTLAYLLPTIHNILQRKAANKR 100
Query: 89 VQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
+ T AL+L P+KEL Q+ ++ T+ C+ D++C +I+ + D +V + L ++PDIVV
Sbjct: 101 FKTTTALILVPTKELATQVVTTVKAFTLFCAGDIRCENIARKEDAAVTKARLAQKPDIVV 160
Query: 149 ATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
ATPARA+ +TL L ++ +IIDEADLV S+GY+DD+K++ LP Q I+ SAT
Sbjct: 161 ATPARAVQWSNDETLKL-DEIKQLIIDEADLVLSYGYKDDLKSIATSLPAGVQKIMMSAT 219
Query: 209 LSEDVLSLKHLILR-----NPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLN 263
L +V L L P IL L LA Y + EDEK ++Y + KL
Sbjct: 220 LRTEVDDLSSLFFSKQEGTGPEILDLSSEEAVEKPALAQYTVRTAEDEKFLLIYAIFKLQ 279
Query: 264 LVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIAS 323
L++GK IIFV +D+CY++KL+LEQF I +CVLNSELP +R H V +FN+G+YD+IIA+
Sbjct: 280 LIKGKIIIFVADIDRCYRIKLFLEQFGIRSCVLNSELPVNSRLHVVEEFNRGVYDIIIAA 339
Query: 324 DEKALETPQINSTNNRKRKR---------------------------------------- 343
DE + + T NRKR+R
Sbjct: 340 DEGEVVGIEEAKTANRKRRRLEKEAEKEEEEDEAGEGMEDAIEPVEAGAEDGAEGGAAPA 399
Query: 344 -------------DKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTAL 390
D+E GVSRGIDF++V+ V+NFD P + + Y HR GRTAR G AL
Sbjct: 400 VQGPAKKERKPRNDREYGVSRGIDFRYVTCVLNFDLPANSKSYTHRIGRTARAGQTGMAL 459
Query: 391 SFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFE 450
SF +E + T+++ + E+ +++ + + E IK + + +++GF
Sbjct: 460 SFYVPQEHYRKHKPTSIAQCEMDEK-VLDKIKQKQADKGDE----IKEWGLDWAKLEGFR 514
Query: 451 YRAKDAWRS-------------------------NYFEDNPTDLETLRHDKALYTVRIQS 485
YR DA R+ +FE+NP DL LRHD + VR Q
Sbjct: 515 YRLADALRAVTRIAVREARTKELRNELIKSEKLKRHFEENPEDLRHLRHDTESHAVRQQP 574
Query: 486 HLADVPDYIVPPALK 500
HL VPDY++P K
Sbjct: 575 HLKHVPDYLLPSGGK 589
>gi|388858151|emb|CCF48219.1| probable ATP dependent RNA helicase of the DEAD-box family
[Ustilago hordei]
Length = 679
Score = 345 bits (884), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 204/554 (36%), Positives = 302/554 (54%), Gaps = 102/554 (18%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTA-- 87
L+A+A LG+ PT IQ++AIPL L KD+L RARTGSGKT A+ +P++QK+++ K
Sbjct: 74 LRALADLGYGIPTPIQQKAIPLALAGKDILARARTGSGKTLAYGLPLLQKVLDAKSVMAK 133
Query: 88 ---QVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERP 144
Q T+ALVL P++EL Q+ +++ + D++ V+++ VQ LL E+P
Sbjct: 134 SDPNHQLTRALVLVPTRELAEQVLRHLSVIIEYVGDDIRLVNVARDASEKVQRLLLSEKP 193
Query: 145 DIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLK--FLPKLYQA 202
D+V+ATP++AL++L+ +LDLKS +E + IDEADL+ S+G++ D+K++L +LP +Q+
Sbjct: 194 DVVIATPSKALSYLQNASLDLKSGMESLAIDEADLILSYGHDADVKSLLSGNYLPSHFQS 253
Query: 203 ILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKL 262
+L SAT++ DV LK L+LR PV+LKL E + S L ++ E++K ++Y +LKL
Sbjct: 254 LLMSATMTSDVSKLKGLLLRKPVVLKLNESDESSASNLVQFYTKTSEEDKFLLVYIILKL 313
Query: 263 NLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIA 322
L++GK I+FVN +++ Y+LKL+LE+F + CVLN+ELP +R V +FN+G +D I+A
Sbjct: 314 KLIRGKAILFVNELERGYRLKLFLEKFGLKACVLNAELPINSRYSIVEEFNKGRFDYIVA 373
Query: 323 SDE-----KALETPQINSTN--------------------NRKRKRD------------- 344
+DE KA + +KRK D
Sbjct: 374 TDEPTGLGKADADQDEDKDEDENEEEEETREVEDAGEEVAGKKRKSDTASSKKSRKKQKQ 433
Query: 345 ------KESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVS---- 394
E GVSRG+DF VS VINFD P + YIHR GRTARG GT+LSFV
Sbjct: 434 SKSKTSAEFGVSRGVDFINVSCVINFDLPTTVDGYIHRIGRTARGGASGTSLSFVVPASE 493
Query: 395 ------LREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKG 448
L + D + L +S + +V E + ++ V+G
Sbjct: 494 YGKSKYLNCPSTIKDESVLRKISRSTSAIGGEVQE---------------WSYDASSVEG 538
Query: 449 FEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKALYTVRI 483
F YR D +S ++F+D+P DL L+HDKAL R
Sbjct: 539 FRYRVSDTLKSITKLLIREARIKELKHEILTSTKLQSHFQDHPDDLSYLQHDKALLNSRA 598
Query: 484 -QSHLADVPDYIVP 496
Q HL VP Y+VP
Sbjct: 599 QQGHLKHVPQYLVP 612
>gi|408390101|gb|EKJ69512.1| hypothetical protein FPSE_10337 [Fusarium pseudograminearum CS3096]
Length = 615
Score = 345 bits (884), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 202/534 (37%), Positives = 295/534 (55%), Gaps = 62/534 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQAIA+ + +PTL+Q +AIPL L +DVL +A GSGKT A+ +P++ I+ K T
Sbjct: 52 LQAIAQQKFAKPTLVQRKAIPLALNGQDVLAKADCGSGKTAAYVLPLLSSILKRKATDST 111
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T AL+L P++EL +Q+ K I++ C++D+ ++++V VQ LL PDIV++
Sbjct: 112 AFTTALILVPTRELADQVSKAIEQFASFCAKDISTAKLTDKVSSKVQRALLSNSPDIVIS 171
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP+ A ++ + L + L +I+DEADLV S+GY +D++ + + +PK Q ++ SATL
Sbjct: 172 TPSTAWQNVNSSALSI-DKLTHLILDEADLVLSYGYSEDLENLSRSVPKGVQVMMMSATL 230
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
S++V +LK + R+P +L L+E A + + EDEK + Y + KL L++GK
Sbjct: 231 SDEVDTLKGIFRRDPTLLDLKEKE-AEGEGITQFVAKCGEDEKFLLAYVIFKLKLIKGKC 289
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK--- 326
IIFV+ +D+CY+LKL+ EQF I +C+LNSELP +R H V +FN+ +YD+IIA+DEK
Sbjct: 290 IIFVSDIDRCYRLKLFFEQFGIRSCILNSELPLNSRVHVVEEFNRHVYDIIIAADEKNEM 349
Query: 327 --------------------------ALETPQINSTNNRKRKRDKESGVSRGIDFQFVSN 360
E + + + DKE GVSRG+DF+ VS
Sbjct: 350 LGDEEEPTETAEAEDDAKKSNEGDDAETEAKRPKKKAKKSKGGDKEYGVSRGVDFKKVSA 409
Query: 361 VINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMND 420
VINFD P Y HR GRTAR G ALSFV +DL S + E D
Sbjct: 410 VINFDLPTTASAYTHRIGRTARAGQTGMALSFVV--PKDLYRKHMPTSTPAC-END--EK 464
Query: 421 VNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS--------------------- 459
+ ++ + D +KPY FN+ +V F YR DA R+
Sbjct: 465 IMARIIRQQAKRDKEVKPYNFNMKQVDPFRYRMNDALRAVTKVAIREARTRELRQELLKS 524
Query: 460 ----NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPPALKKLARIEDDG 509
YFE+NPT+L LRHD L T R Q+HL +P+Y++P K+ A ED G
Sbjct: 525 EKLKRYFEENPTELSHLRHDGELRTARQQAHLKHIPEYLMPKDGKQ-ALTEDVG 577
>gi|365990357|ref|XP_003672008.1| hypothetical protein NDAI_0I01960 [Naumovozyma dairenensis CBS 421]
gi|343770782|emb|CCD26765.1| hypothetical protein NDAI_0I01960 [Naumovozyma dairenensis CBS 421]
Length = 608
Score = 344 bits (883), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 199/572 (34%), Positives = 321/572 (56%), Gaps = 84/572 (14%)
Query: 11 TLIQVYFELPFTFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNK-DVLVRARTGS 66
T + Y + TF F + LQAI G+ PTLIQ AIPL LQ K D++ +A TGS
Sbjct: 5 TASEAYIDDSTTFESFQLDSRLLQAIKSFGFHHPTLIQSTAIPLALQQKRDIIAKAATGS 64
Query: 67 GKTGAFAIPMIQKIINLKQTA------QVQETKALVLSPSKELCNQLHKNIQELTMKCSR 120
GKT ++ +P+I+ I++ K+T + T ++L P++EL +Q+ ++++ + CS
Sbjct: 65 GKTLSYLVPVIETILDYKKTRVGNDIIEENSTLGIILVPTRELAHQVATVLEQMILFCSN 124
Query: 121 DVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLK-SSLEIVIIDEADL 179
D++ ++IS + SV LL RP+I+++TP + + L+ K + L+ ++IDE DL
Sbjct: 125 DIRYLNISSDISNSVLSSLLTNRPEIIISTPGKLMNVLETKITSITLEDLKFLVIDEVDL 184
Query: 180 VFSFGYEDDMKAVLKFLP--KLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAI-AP 236
V +FGY++D+ + ++LP K Q L SATL++D+ LK R+P ILK + I
Sbjct: 185 VLTFGYQEDLNKISEYLPLKKNLQTFLMSATLNDDIQQLKQKFCRSPAILKFNDDEINKD 244
Query: 237 VSQLAHYHILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVL 296
++L Y++ E +K + Y + KL L++GKT++FVN +D+ Y+LKL LEQF I +C+L
Sbjct: 245 QTKLIQYYVKVSEFDKFLMCYVIFKLGLIKGKTLLFVNNIDRGYRLKLVLEQFGIKSCIL 304
Query: 297 NSELPAKARCHAVYQFNQGLYDVIIASDE-----------------KALET--------- 330
NSELPA +R H V QFN+ +Y+++IA+D+ K ET
Sbjct: 305 NSELPANSRQHIVDQFNKNIYNLLIATDDTEYIKEEEDEDEDEGDSKGDETNAKDKVEVG 364
Query: 331 ------------PQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAG 378
Q + N +K ++DKE GVSRG+DF+ V+ V+NFD P + YIHR G
Sbjct: 365 VEGKDDSTKESETQNKNNNKQKTRKDKEYGVSRGVDFKNVACVLNFDLPTTAKSYIHRIG 424
Query: 379 RTARGKNQGTALSF-VSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIK 437
RTAR GTA+SF V L+E ++ + R++ +++ + + + ++
Sbjct: 425 RTARAGKSGTAISFVVPLKEYG--KHKPSMCQTTKRDEKILSRI----IKQQSKLGLEMQ 478
Query: 438 PYQFNLDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETL 472
PY F+ +V+GF YR +D +R+ +FE+NP +L++L
Sbjct: 479 PYSFDTKQVEGFRYRLEDGFRAVTQVAVREARIKELKQELLTSEKLKRHFEENPKELQSL 538
Query: 473 RHDKALYTVRIQSHLADVPDYIVPPALKKLAR 504
RHDK L++ R+Q HL VP+Y++P A +K +
Sbjct: 539 RHDKELHSARVQQHLKRVPEYLLPEAARKGGK 570
>gi|50424613|ref|XP_460896.1| DEHA2F12232p [Debaryomyces hansenii CBS767]
gi|74688654|sp|Q6BLM5.1|DBP9_DEBHA RecName: Full=ATP-dependent RNA helicase DBP9
gi|49656565|emb|CAG89246.1| DEHA2F12232p [Debaryomyces hansenii CBS767]
Length = 586
Score = 344 bits (882), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 198/533 (37%), Positives = 315/533 (59%), Gaps = 63/533 (11%)
Query: 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNK-DVLVRARTGSGKTGAFAIPMIQKI 80
+F L LQAI +LG+ PTLIQ AIPL ++ K D++ +A TGSGKT A++IP+IQ +
Sbjct: 25 SFGLDARLLQAIDQLGFENPTLIQSSAIPLAIEEKRDIIAKASTGSGKTAAYSIPIIQNL 84
Query: 81 INLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLL 140
L+ + +E K+++L P++EL NQ+ + +++L + C+ ++ ++IS + V LL
Sbjct: 85 --LQDESTEREIKSIILVPTRELSNQVSQFLEKLLIFCNSKIRLINISSNLSDQVINSLL 142
Query: 141 VERPDIVVATPARAL----AHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFL 196
+ +P+I+V+TPA+ + ++ + ++L S+++ + IDE DLV S+GY +D++ + +L
Sbjct: 143 INKPEIIVSTPAKLIQILEKNVNSNLINL-STVKNLTIDEVDLVLSYGYLEDLQKLESYL 201
Query: 197 P--KLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKAT 254
P K Q L SAT+++D+ +K P ILKL + + + L Y+ E +K
Sbjct: 202 PIKKNLQTFLMSATINDDLNDIKSKFCSRPAILKLNDED-SNQNNLVQYYAKTTEFDKFL 260
Query: 255 ILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQ 314
+ Y + KLNL++GKT++FVN +D+ Y+LKL+LEQF + C+LNSELP +R + V Q+N+
Sbjct: 261 LTYVIFKLNLIKGKTLVFVNNIDRGYRLKLFLEQFGVRCCILNSELPINSRLNIVEQYNK 320
Query: 315 GLYDVIIASDEKALETPQI--------------------NSTNNRK--RKRDKESGVSRG 352
+Y+++IA+DE T Q S N +K +K+DKE GVSRG
Sbjct: 321 NVYNLLIATDETNDFTIQEDEKDEGEEIEENKNEENDGKTSKNTKKPNQKKDKEYGVSRG 380
Query: 353 IDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSL 412
+DF+ V+ V+NFD P + YIHR GRTAR G ALSFV + + +LS
Sbjct: 381 VDFRNVACVLNFDLPTSSKSYIHRVGRTARAGKSGMALSFVLPLNEFGKHKTASLSTAKK 440
Query: 413 REQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS------------- 459
E+ L V + + F IKPYQF++ +V+GF YRA+DA+R+
Sbjct: 441 DEKVLRRIVRQQ-----SNNGFEIKPYQFDMKQVEGFRYRAEDAFRAVTQSAVREARIKE 495
Query: 460 ------------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPPALK 500
+FE+NP DL +LRHDK L+ R+Q+HL VP+Y++P + +
Sbjct: 496 LKNELVNSDKLKRFFEENPQDLASLRHDKELHPTRVQTHLKRVPEYLLPESAR 548
>gi|258565271|ref|XP_002583380.1| ATP-dependent helicase [Uncinocarpus reesii 1704]
gi|237907081|gb|EEP81482.1| ATP-dependent helicase [Uncinocarpus reesii 1704]
Length = 607
Score = 343 bits (881), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 203/534 (38%), Positives = 293/534 (54%), Gaps = 89/534 (16%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+ K + +PTL+Q AIPL L KDVL GSGKT A+ +P++Q I++ K
Sbjct: 36 LQALTKQKFTKPTLVQAEAIPLALSGKDVL-----GSGKTAAYLLPVLQSILHKKIANPT 90
Query: 90 QE-TKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
Q+ T AL+L P++EL Q+H I + C +D++ +++++V +VQ +L + PDIVV
Sbjct: 91 QKSTSALILVPTRELAEQVHDTILSFSSYCGKDLQTANLTQKVSDAVQRAILADLPDIVV 150
Query: 149 ATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
+TPARA+ + +L L +L ++IDEADLV S+GYE DM+ + K +P+ Q +L SAT
Sbjct: 151 STPARAVVNANNSSLAL-DNLTHLVIDEADLVLSYGYEQDMQHLAKSIPRGVQTLLMSAT 209
Query: 209 LSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGK 268
L+ +V +LK L R+PV LKLEE A + ++ + + EDEK + Y + KL LV+GK
Sbjct: 210 LTSEVDTLKGLFCRSPVTLKLEE-AEDEGAGISQFAVKCAEDEKFLLTYVIFKLQLVKGK 268
Query: 269 TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL 328
IIFV VD+ Y+LKL+LEQF I +CVLNSELP +R H V +FN+G+YD+IIA+D++ +
Sbjct: 269 CIIFVGDVDRSYRLKLFLEQFGIKSCVLNSELPVNSRIHVVQEFNKGVYDIIIAADDQEV 328
Query: 329 --ETP--QINSTNNRKRKRDKES---------------------------GVSRGIDFQF 357
E P Q +N + E+ G+SRGIDFQ
Sbjct: 329 VGEVPRKQPKDSNREAQNSADEAQKGLSEDEEVDRPPVKKRKKSSKEKDYGISRGIDFQD 388
Query: 358 VSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLRE----------QDLMNDGTAL 407
V+ V+NFD P + Y HR GRT R G ALSF+ E +D T L
Sbjct: 389 VACVLNFDLPTTAKSYTHRIGRTGRAGKTGMALSFIVPSELYGKHKPTSFPTAKHDETVL 448
Query: 408 SFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS-------- 459
+ + R+ L +V KPY F+ ++ F YR DA R+
Sbjct: 449 AKIVKRQAKLGREV---------------KPYNFDTKQIDAFRYRMTDALRAVTRVAVQE 493
Query: 460 -----------------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVP 496
+FE+NP +L LRHD L R+Q+HL VP+Y++P
Sbjct: 494 ARAKEIKQELLKSEKLKRHFEENPEELRQLRHDGELRPARVQAHLKHVPEYLMP 547
>gi|119190623|ref|XP_001245918.1| hypothetical protein CIMG_05359 [Coccidioides immitis RS]
Length = 607
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 200/536 (37%), Positives = 294/536 (54%), Gaps = 91/536 (16%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+ K + +PTL+Q AIPL+L KDVL GSGKT A+ +P++Q I+ K
Sbjct: 35 LQALTKQKFTKPTLVQAEAIPLVLSGKDVL-----GSGKTAAYLLPILQSILQKKIANPT 89
Query: 90 QET-KALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
Q++ AL+L P++EL Q+ + + C +D++ +++++V +VQ +L + PDI++
Sbjct: 90 QKSISALILVPTRELAEQVQNAVVSFSSFCGKDIRSANLTQKVSDAVQRAILADLPDIII 149
Query: 149 ATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
+TPARA+ + + +L L + L ++IDEADLV S+GYE DM+ + K +P+ Q +L SAT
Sbjct: 150 STPARAIINTNSSSLSL-NDLTHLVIDEADLVLSYGYEQDMQNLAKAIPRGVQTLLMSAT 208
Query: 209 LSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGK 268
L+ +V +LK L R+PVILKLEE A + +A + + EDEK + Y + KL LV+GK
Sbjct: 209 LTSEVDALKGLFCRSPVILKLEE-AEDEGAGIAQFAVKCAEDEKFLLTYVIFKLQLVKGK 267
Query: 269 TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE--- 325
IIFV +D+ Y+LKL+LEQF I +CVLNSELP +R H V +FN+G+YD+IIA+D+
Sbjct: 268 CIIFVGDIDRSYRLKLFLEQFGIKSCVLNSELPVNSRIHVVQEFNKGVYDIIIAADDQEV 327
Query: 326 ------KALETP-QINSTNNRKRKRDK-----------------------ESGVSRGIDF 355
K +TP Q N N + + +K + G+SRGIDF
Sbjct: 328 IGEIPKKGSKTPEQSNGENGDEPEEEKGFSDEDEVEPPPSKKRKKSTKEKDYGISRGIDF 387
Query: 356 QFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLRE----------QDLMNDGT 405
Q V+ V+NFD P + Y HR GRT R G ALS + E ND
Sbjct: 388 QDVACVLNFDLPTTAKSYTHRIGRTGRAGKTGMALSLIVPSELYGRHKPTSFPTAKNDEA 447
Query: 406 ALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS------ 459
L+ + R+ L +V KPY F+ ++ F YR DA R+
Sbjct: 448 VLAKIIKRQAKLGREV---------------KPYNFDTKQIDAFRYRMTDALRAVTRVAV 492
Query: 460 -------------------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVP 496
+FE+NP +L LRHD L R+Q+HL VP+Y++P
Sbjct: 493 QEARTKEIKQELLNSEKLKRHFEENPEELRQLRHDGELRPTRVQAHLKHVPEYLMP 548
>gi|336465803|gb|EGO53968.1| hypothetical protein NEUTE1DRAFT_148439 [Neurospora tetrasperma
FGSC 2508]
gi|350287366|gb|EGZ68613.1| P-loop containing nucleoside triphosphate hydrolase protein
[Neurospora tetrasperma FGSC 2509]
Length = 676
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 196/516 (37%), Positives = 294/516 (56%), Gaps = 55/516 (10%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
+QA+AK + +PTL+Q +AIPL L +DVL +A+TGSGKT A+ +P++ I+ K T
Sbjct: 107 VQAVAKQSFEKPTLVQRKAIPLALAGQDVLCKAKTGSGKTAAYVLPVLSGILKRKATDPT 166
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T AL+L P++EL +Q+HK I + C++D++ +++ V +V LL PD++V+
Sbjct: 167 PFTSALILVPTRELADQVHKAIDAFSAFCTKDIQSAKLTDNVSDAVLRSLLANAPDVIVS 226
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPK-LYQAILASAT 208
TPARA ++++ L + + L+ +++DEADLV S+GY++DM+ + + LPK Q + SAT
Sbjct: 227 TPARAWHNIESGALSI-AKLQYLVLDEADLVLSYGYDEDMENIARSLPKGGVQTTMMSAT 285
Query: 209 LSEDVL-SLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
L D L +LK RNP +L L+E +L +++ ED+K I Y + KL L++G
Sbjct: 286 LVSDELDTLKGFFCRNPTMLDLKEEFSNEDEKLTQFYVKCGEDDKWLISYLIFKLQLIKG 345
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
++FV +D+ Y+LKL+ EQF I +CVLNSELP R + +FN+G+YD+IIASDE++
Sbjct: 346 PCLVFVADIDRAYRLKLFFEQFSIRSCVLNSELPINTRIKIIEEFNRGIYDIIIASDERS 405
Query: 328 ---------------------LETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDF 366
E + +K +RD+E GVSRGIDF+ V+ VINFD
Sbjct: 406 EVFLEDEKTEEKKEEQGEKKEGEEKKNGKGKKKKGRRDQEYGVSRGIDFKNVAAVINFDM 465
Query: 367 PLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLM 426
P YIHR GRTAR G ALS V DL S+++ + V +M
Sbjct: 466 PTSSSSYIHRIGRTARAGRAGIALSMVV--PHDLFGKHKP---TSIKQCEKDEKVLAKVM 520
Query: 427 TNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS-------------------------NY 461
+ + ++PY FN D+++ F YR DA R+ Y
Sbjct: 521 RQQAKLNRKLEPYNFNKDQMEAFRYRMNDALRAVTKVAIREARTRELRQELLRSETLKRY 580
Query: 462 FEDNPTDLETLRHDKALYT-VRIQSHLADVPDYIVP 496
FE+NP +L LRHD L T +R Q+HL VPDY++P
Sbjct: 581 FEENPHELSHLRHDGELGTKMRQQAHLKHVPDYLLP 616
>gi|448533726|ref|XP_003870686.1| DEAD-box helicase [Candida orthopsilosis Co 90-125]
gi|380355041|emb|CCG24557.1| DEAD-box helicase [Candida orthopsilosis]
Length = 570
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 192/515 (37%), Positives = 308/515 (59%), Gaps = 54/515 (10%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNK-DVLVRARTGSGKTGAFAIPMIQKIINLKQTAQ 88
LQAI +LG+ PTLIQ AIPL L+ K D++ +A TGSGKT A+AIP+IQ NL
Sbjct: 28 LQAIDQLGFENPTLIQSSAIPLALEEKRDIIAKASTGSGKTAAYAIPVIQ---NLLLDNS 84
Query: 89 VQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
K+++L P++EL NQ+ + +++L ++ + +++S V LL +P+I++
Sbjct: 85 GPGIKSIILVPTRELSNQVFQFMEQLIKHSNKKIGILNLSSSYSDQVLNSLLANKPEIII 144
Query: 149 ATPARALAHLKAKT----LDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLP--KLYQA 202
+TP + + L+ +DL SS+ + IDE DL+ SFGY +D+ + +LP K Q
Sbjct: 145 STPNKLIQILEMNDEKIPIDL-SSVRNLTIDEVDLILSFGYLEDLAKLESYLPVKKNLQT 203
Query: 203 ILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKL 262
L SAT+++D+ LK P ILKL++ + +L ++ E +K + Y + KL
Sbjct: 204 FLMSATINDDINELKTKFCTKPAILKLDDEQ-SSNDKLVQFYAKTTEFDKFLLSYVIFKL 262
Query: 263 NLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIA 322
NL++GKTI+FVN +D+ Y+LKL+LEQF I C+LNSELP +R H V +FN+ +Y ++IA
Sbjct: 263 NLIKGKTIVFVNNIDRGYRLKLFLEQFGIRCCILNSELPINSRLHIVEEFNKNVYHLLIA 322
Query: 323 SDEKALE------------TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDI 370
+DE ++E + Q T +++ K+DKE GVSRG+DF+ V+ V+NFD P
Sbjct: 323 TDEISVEKDEGENDVEEGKSAQKEETKSKRSKKDKEYGVSRGVDFKNVACVLNFDLPTTS 382
Query: 371 QCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLH 430
+ Y+HR GRTAR G ALSFV + +++ TA + R++ +++ + +
Sbjct: 383 KAYVHRIGRTARAGKSGMALSFV-IPLKEVGKHKTATLSTAKRDEKILSKI----VKQQE 437
Query: 431 EDDFIIKPYQFNLDEVKGFEYRAKDAWRS-------------------------NYFEDN 465
++ F IKPYQF++ +V+GF YRA DA+R+ +F++N
Sbjct: 438 KNGFEIKPYQFDMKQVEGFRYRADDAFRAVTQTAIREARVKELKNELINSEKLKRFFQEN 497
Query: 466 PTDLETLRHDKALYTVRIQSHLADVPDYIVPPALK 500
P +L +LRHDK L+ R+Q+HL ++P+Y++P + +
Sbjct: 498 PQNLASLRHDKELHPARVQAHLKNLPEYLLPESAR 532
>gi|50287517|ref|XP_446188.1| hypothetical protein [Candida glabrata CBS 138]
gi|74691026|sp|Q6FUA6.1|DBP9_CANGA RecName: Full=ATP-dependent RNA helicase DBP9
gi|49525495|emb|CAG59112.1| unnamed protein product [Candida glabrata]
Length = 595
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 201/539 (37%), Positives = 307/539 (56%), Gaps = 69/539 (12%)
Query: 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNK-DVLVRARTGSGKTGAFAIPMIQKI 80
+F L LQAI G+ PTLIQ AIPL L+ K D++ +A TGSGKT A+ IP+IQ I
Sbjct: 18 SFKLDARLLQAIKGSGFTHPTLIQSHAIPLALEEKRDIIAKAATGSGKTLAYLIPVIQTI 77
Query: 81 INLKQTAQVQE---TKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQE 137
++ K++ + T +++ P++EL Q+ +++L CS+D+K ++++ + SV
Sbjct: 78 LDYKKSRTNGDEPGTLGIIMVPTRELTQQVTAVLEKLIHYCSKDIKVLNLAADLSTSVLN 137
Query: 138 PLLVERPDIVVATPARALAHLKAKTLDLK-SSLEIVIIDEADLVFSFGYEDDMKAVLKFL 196
LL E P+I+V TP++ L L+ T + L+ ++IDE DLV +FGY+DD+ + ++L
Sbjct: 138 TLLSENPEIIVGTPSKILNILERNTDTVGIDDLKFLVIDEVDLVLTFGYQDDLDKIAEYL 197
Query: 197 P--KLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAI-APVSQLAHYHILAQEDEKA 253
P K Q L SATLS+D+ SLK R+P I+K + I ++L Y++ E +K
Sbjct: 198 PLKKNLQTFLMSATLSDDIQSLKQKYCRSPAIIKFNDDEINKDKTKLVQYYVRVGEFDKF 257
Query: 254 TILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFN 313
Y + KL L++GKT++FVN +D+ Y+LKL LEQF I +C+LN+ELPA +R H V QFN
Sbjct: 258 LFCYVIFKLGLIKGKTLVFVNNIDRGYRLKLVLEQFGIKSCILNNELPANSRQHIVDQFN 317
Query: 314 QGLYDVIIASD-------------------EKALETPQI------NSTNNRKR------K 342
+ +Y ++IA+D EK ET + NST K K
Sbjct: 318 KNVYHLLIATDDADNIKEFDDEQKDDIQVEEKNDETNTVVAEESTNSTTGIKSKTKNNYK 377
Query: 343 RDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMN 402
+DKE GVSRG+DF+ V+ V+NFD P + Y+HR GRTAR GTA+SFV ++ +
Sbjct: 378 QDKEYGVSRGVDFKNVACVVNFDLPTTAKAYVHRVGRTARAGKSGTAISFVVPLKEFGKH 437
Query: 403 DGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS--- 459
+ L E+ L + + L I+PY F+L +V+GF YR +D +R+
Sbjct: 438 KPSMLPSAKKDEKILSRIIKQQSKLGLE-----IQPYSFDLKQVEGFRYRMEDGFRAVTQ 492
Query: 460 ----------------------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVP 496
+FE+NP +L++LRHDK L+ R+Q+HL +P+Y++P
Sbjct: 493 VAVREARIKELKEELLASEKLKRHFEENPIELKSLRHDKELHPARVQNHLKRIPEYLLP 551
>gi|167517018|ref|XP_001742850.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163779474|gb|EDQ93088.1| predicted protein [Monosiga brevicollis MX1]
Length = 550
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 206/548 (37%), Positives = 303/548 (55%), Gaps = 41/548 (7%)
Query: 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIIN 82
F L L+AI +LGW +PTLIQ+ AI ++ +DVL RARTGSGKTGA+ +P++ +
Sbjct: 6 FGLDGRLLKAIGRLGWGKPTLIQQHAIRELMNGRDVLARARTGSGKTGAYTVPLLN--VL 63
Query: 83 LKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVE 142
L T + Q +VL P+KEL Q+ +NI+EL C + ++ + L
Sbjct: 64 LSATDEEQGVLGIVLVPTKELAFQVTENIKELAKFCLDVINVGVLATNQSKKQLKSLAAS 123
Query: 143 RPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQA 202
+P I+V TP R L H++ + +++ +L+++I+DEADL+FS+GY +D++ + LP+L Q
Sbjct: 124 KPPILVGTPTRILQHIQNEAKEVRQTLKLMILDEADLLFSYGYHEDLRRLCALLPRLRQT 183
Query: 203 ILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKL 262
IL SAT+ +DV +LK L LRNP ++KLEE + QL Y + + E+ L LLK
Sbjct: 184 ILMSATMGDDVNALKELALRNPAVIKLEESDLPDEDQLKQYKLYCEPSERLLHLCALLKF 243
Query: 263 NLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIA 322
LV+GKT+IFVN +D CY++KL+L++F I CVLNSELP +R H V QFN+G+YD IIA
Sbjct: 244 QLVRGKTLIFVNDIDSCYRVKLFLDKFGIRCCVLNSELPLNSRRHIVSQFNKGVYDYIIA 303
Query: 323 SDEKALETPQINSTNNRKRKR-----DKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRA 377
SDE A R + R D+E GV+RG+DF+ + NVINFDFP Y+HR
Sbjct: 304 SDEGATGKSLWGGICKRGKGRAEPSADQEYGVARGVDFKGIKNVINFDFPATAAAYVHRV 363
Query: 378 GRTARGKNQGTALSFVSLREQD-------LMNDGTALSFVSLREQDLMNDVNEYLMTNLH 430
GRTARG G ALSF + + L+ A ++ + + +
Sbjct: 364 GRTARGHRAGLALSFYLHADNERVAQVERLLEVAEAQEQEEAETAKPNSEASAHRLVAYS 423
Query: 431 EDDFIIKPYQFNLDEVKGFEYRA--KDAWRSN-------------YFEDNPTDLETLRHD 475
D ++ ++ +++V R K A R+ +FEDNP DLE LRHD
Sbjct: 424 IDKRVLDKIRYRVEDVLSMVSRNAIKKARRAEIENEILNSEKLQAHFEDNPKDLEVLRHD 483
Query: 476 KALYTVRIQ--SHLADVPDYIVP----PALKKLARIEDDGDEDVRAEPITDEEYNKQYEE 529
+ L R Q HL +P YI PA++ A D++ RA + + +
Sbjct: 484 RNLQQ-RDQHMHHLKHLPAYIKQGVSVPAIQSGA-----NDKNGRAGGANGKRRPNKNNK 537
Query: 530 YKKRSKEN 537
KR K++
Sbjct: 538 SSKRRKDD 545
>gi|85096857|ref|XP_960335.1| hypothetical protein NCU07070 [Neurospora crassa OR74A]
gi|74628745|sp|Q7S6F3.1|DBP9_NEUCR RecName: Full=ATP-dependent RNA helicase dbp-9
gi|28921823|gb|EAA31099.1| hypothetical protein NCU07070 [Neurospora crassa OR74A]
Length = 676
Score = 342 bits (876), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 195/516 (37%), Positives = 294/516 (56%), Gaps = 55/516 (10%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
+QA+AK + +PTL+Q +AIPL L +DVL +A+TGSGKT A+ +P++ I+ K T
Sbjct: 107 VQAVAKQSFEKPTLVQRKAIPLALAGQDVLCKAKTGSGKTAAYVLPVLSGILKRKATDPT 166
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T AL+L P++EL +Q+HK I + C++D++ +++ V +V LL PD++V+
Sbjct: 167 PFTSALILVPTRELADQVHKAIDAFSAFCTKDIQSAKLTDNVSDAVLRSLLANAPDVIVS 226
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPK-LYQAILASAT 208
TPARA ++++ L + + L+ +++DEADLV S+GY++DM+ + + LPK Q + SAT
Sbjct: 227 TPARAWHNIESGALSV-AKLQYLVLDEADLVLSYGYDEDMENIARSLPKGGVQTTMMSAT 285
Query: 209 LSEDVL-SLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
L D L +LK RNP +L L+E +L +++ ED+K I Y + KL L++G
Sbjct: 286 LVSDELDTLKGFFCRNPTMLDLKEEFSNEDEKLTQFYVKCGEDDKWLISYLIFKLQLIKG 345
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
++FV +D+ Y+LKL+ EQF I +CVLNSELP R + +FN+G+YD+IIASDE++
Sbjct: 346 PCLVFVADIDRAYRLKLFFEQFSIRSCVLNSELPINTRIKIIEEFNRGIYDIIIASDERS 405
Query: 328 ---------------------LETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDF 366
+ + +K +RD+E GVSRGIDF+ V+ VINFD
Sbjct: 406 EVFLEDEKTEEKKEEQGEKKEGDEKKNGKGKKKKGRRDQEYGVSRGIDFKNVAAVINFDM 465
Query: 367 PLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLM 426
P YIHR GRTAR G ALS V DL S+++ + V +M
Sbjct: 466 PTSSSSYIHRIGRTARAGRAGIALSMVV--PHDLFGKHKP---TSIKQCEKDEKVLAKVM 520
Query: 427 TNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS-------------------------NY 461
+ + ++PY FN D+++ F YR DA R+ Y
Sbjct: 521 RQQAKLNRKLEPYNFNKDQMEAFRYRMNDALRAVTKVAIREARTRELRQELLRSETLKRY 580
Query: 462 FEDNPTDLETLRHDKALYT-VRIQSHLADVPDYIVP 496
FE+NP +L LRHD L T +R Q+HL VPDY++P
Sbjct: 581 FEENPHELSHLRHDGELGTKMRQQAHLKHVPDYLLP 616
>gi|358057669|dbj|GAA96434.1| hypothetical protein E5Q_03101 [Mixia osmundae IAM 14324]
Length = 642
Score = 342 bits (876), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 213/571 (37%), Positives = 317/571 (55%), Gaps = 116/571 (20%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+++LG+ PTL+Q + IPL L DVL RARTGSGKT A+ IP++Q I+ K
Sbjct: 19 LRALSELGFTHPTLVQHKVIPLALAGNDVLARARTGSGKTLAYGIPVVQSILRTKAALSA 78
Query: 90 QE-----TKALVLSPSKELCNQLHKNIQELT--MKCSRDVKCVDI-------------SE 129
T+AL+L P+KEL Q+ ++++ L + + VK ++I ++
Sbjct: 79 ASPDRAATRALILVPTKELSEQVTQHLRSLCSFLGETDAVKILNIASSSGSRSKKGKATD 138
Query: 130 QVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYE-DD 188
+ + + L E+PDIVVATP+RAL HL+++TL L ++LE ++IDEADL+ S+G+ DD
Sbjct: 139 RTNDKAHKLGLAEKPDIVVATPSRALDHLRSETLAL-TALESLVIDEADLILSYGHSSDD 197
Query: 189 MKAVLKF---LPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHI 245
+KA+L LP +YQ+ L SATL+++V LK ++LR PV+LKL+E ++ L + +
Sbjct: 198 IKALLSGSWNLPAVYQSYLMSATLNDEVDELKGIVLRRPVVLKLDEQEDG-LANLTQHCV 256
Query: 246 LAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKAR 305
E++K +Y +LKL LV+GK +IFVN VD+ Y++KL+LE+F + + VLN+ELP +R
Sbjct: 257 RCSEEDKFLFIYVILKLKLVKGKALIFVNDVDRGYRVKLFLEKFGLRSGVLNAELPFNSR 316
Query: 306 CHAVYQFNQGLYDVIIASDEKAL--------ETPQIN----------------------- 334
HAV +FN+G++D +IA+DE L PQ+
Sbjct: 317 YHAVQEFNRGVFDYLIATDESGLSEAPSTAASMPQVEDLIPAQAGEAVDPAQEPIEELDN 376
Query: 335 ------------STNNRKRKRDKES----GVSRGIDFQFVSNVINFDFPLDIQCYIHRAG 378
T ++KRK K S GVSRG+DF V+ VINFD P +++ Y HR G
Sbjct: 377 IETGKRKREDKPETASKKRKASKNSQIDYGVSRGVDFVDVACVINFDLPANVESYTHRVG 436
Query: 379 RTARGKNQGTALSFV---SLREQDLMNDGTALSFVSLREQD-----LMNDVNEYLMTNLH 430
RTAR G ALSFV +L + D LS + R + + D +T+L
Sbjct: 437 RTARAGRTGMALSFVVPKALWGKQTFGD---LSLPNARRDEAHWRKIEKDQKARGVTDLK 493
Query: 431 EDDFIIKPYQFNLDEVKGFEYRAKDAWRS-------------------------NYFEDN 465
E Y+F++ +V+GF YR +D RS +FEDN
Sbjct: 494 E-------YKFDMKQVEGFRYRMEDGLRSVTRASIREARVREIKQEVINSDKLKAHFEDN 546
Query: 466 PTDLETLRHDKALYTVRIQSHLADVPDYIVP 496
P DL+ LRHDK L+ R+Q H+ VP Y++P
Sbjct: 547 PADLDFLRHDKPLHPARVQPHMKHVPSYLMP 577
>gi|324508234|gb|ADY43479.1| ATP-dependent RNA helicase DDX56 [Ascaris suum]
Length = 665
Score = 341 bits (875), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 205/520 (39%), Positives = 305/520 (58%), Gaps = 70/520 (13%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AI +LGW +PT IQ+ IPL L+ K++ RARTGSGKT AF +P+IQK+++L +
Sbjct: 126 LKAIGELGWEKPTQIQQTMIPLALEGKNITARARTGSGKTAAFMLPIIQKLLHLTSMSSS 185
Query: 90 QETK---ALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDI 146
+ AL ++PS+EL Q+ K + +LT + V+ S+ D + + L E PD+
Sbjct: 186 CTSAGPYALFIAPSRELAAQIFKLLLQLTAAFPF-LLSVNFSD-FDFNAEIAWLKEHPDM 243
Query: 147 VVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
+V+TP+R + K K L L V++DEADL+ S+GYE+DM+ + +FLP+ YQ I S
Sbjct: 244 IVSTPSRLVDACKRKP-QLCEQLRYVVLDEADLLLSYGYENDMRQLKQFLPQNYQTIFTS 302
Query: 207 ATLSEDVLSLKHLILRNP-VILKLEEPAIAPVSQLAHYHILAQ-EDEKATILYTLLKLNL 264
ATL+ED+ LK + L V L+L+E + QLA Y I + E+E+ +L ++KL L
Sbjct: 303 ATLTEDISPLKKMFLNGALVTLRLKEGQLPDSDQLAQYLITCRNEEERFAVLLAMMKLKL 362
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
+ GK+IIFV+ D+CY+L L+L+ F+I +C+LN+++PA +RCH V +FN+G Y IIASD
Sbjct: 363 LVGKSIIFVSNPDRCYQLGLFLQAFQIRSCILNAQMPANSRCHVVDEFNEGRYSYIIASD 422
Query: 325 EKAL---------ETPQINSTN------NRKRKR-DKESGVSRGIDFQFVSNVINFDFPL 368
+ + PQ + + +KRKR DKESGV+RGIDF VSNV+NFDFP
Sbjct: 423 VSGVLAERDTQEGQWPQNDEYSLGIIREKKKRKRFDKESGVARGIDFTHVSNVVNFDFPT 482
Query: 369 DIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTN 428
Y+HR GRTARG N+GTA+SF + E SFV L +++++ +M
Sbjct: 483 SFDGYVHRVGRTARGWNKGTAISFATPNEA---------SFVELVRHKMVSEMGRVIM-- 531
Query: 429 LHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS-------------------------NYFE 463
PY ++ E++ F RA++A + YF
Sbjct: 532 ---------PYAIHIKELESFVLRAREALAACTRSVIREARLAEIRGEALRSKKLDGYFA 582
Query: 464 DNPTDLETLRHDKALYTVRIQS-HLADVPDYIVPPALKKL 502
+NP + L HDK LYT+ + S +ADVPDY+VP +L+ +
Sbjct: 583 ENPRERTLLEHDKKLYTLSLHSPAIADVPDYMVPASLRGM 622
>gi|71024867|ref|XP_762663.1| hypothetical protein UM06516.1 [Ustilago maydis 521]
gi|46099685|gb|EAK84918.1| hypothetical protein UM06516.1 [Ustilago maydis 521]
Length = 672
Score = 341 bits (875), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 213/577 (36%), Positives = 319/577 (55%), Gaps = 73/577 (12%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQT--- 86
L+A+A LG+ PT IQ++AIPL L KD+L RARTGSGKT A+ +P++QK+++ K
Sbjct: 71 LRALADLGYGIPTPIQQKAIPLALAGKDILARARTGSGKTLAYGLPLLQKVLDAKSAVAK 130
Query: 87 --AQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERP 144
A Q T+ALVL P++EL Q+ +++ + D++ V+++ + VQ LL E+P
Sbjct: 131 SDANHQLTRALVLVPTRELAEQVFRHLSVVIEYVRDDIRLVNVAREASEKVQRLLLSEKP 190
Query: 145 DIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVL--KFLPKLYQA 202
D+V+ATP++AL +L+ +LDLKS +E + IDEADL+ S+G++ D+K++L FLP +Q+
Sbjct: 191 DVVIATPSKALNYLQNASLDLKSGMESLAIDEADLILSYGHDADVKSLLGANFLPSHFQS 250
Query: 203 ILASATLSEDVLSLKHLILRNPVILKL-EEPAIAPVSQLAHYHILAQEDEKATILYTLLK 261
L SAT++ DV LK L+LRNPV+LKL + A S L ++ E++K + Y +LK
Sbjct: 251 FLMSATMTSDVSKLKGLLLRNPVVLKLNHDDEAASGSNLVQFYTKTTEEDKFLLAYVILK 310
Query: 262 LNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVII 321
L L++GK I+FVN +++ Y+LKL+LE+F + CVLN+ELP +R V +FN+G +D I+
Sbjct: 311 LKLIRGKAILFVNELERGYRLKLFLEKFGLRACVLNAELPINSRYSIVEEFNKGKFDYIV 370
Query: 322 ASDE------------------------------------------KALETPQINSTNN- 338
A+DE K+ E + +N
Sbjct: 371 ATDEPTGASGNMQDDEGDDEEEDADEREADEVDEQAEDQREAGKKRKSSEHAGAETKSNK 430
Query: 339 ------RKRKRD-KESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALS 391
RK K E GVSRG+DF VS VINFD P + YIHR GRTARG GTALS
Sbjct: 431 SKVSQHRKGKNGASEYGVSRGVDFINVSCVINFDLPTSVDSYIHRVGRTARGGASGTALS 490
Query: 392 FVSLREQDLMNDGTALSFVSLREQDLMNDVNE-----YLMTNLHEDDFIIKPYQFNLDEV 446
FV +Q + + R++ + +N+ L + L E + L E
Sbjct: 491 FVVPSDQ-VGRSKYLYCASTTRDESVFKMLNKPSTISLLGSALQEWKYDSSASPRRLSEK 549
Query: 447 KGFEYRAKDAWRS----NYFEDNPTDLETLRHDKALYTVRI-QSHLADVPDYIVPPALKK 501
+ + S ++FED+P DL L+HDKAL T R QSHL VP Y+VP +
Sbjct: 550 HAIKELKNEILTSSKLQSHFEDHPDDLAFLQHDKALLTSRAQQSHLKHVPQYLVPKIINP 609
Query: 502 LARIEDDGDEDVRA----EPITDEEYNKQYEEYKKRS 534
A++ + + I D +++ + K+RS
Sbjct: 610 GAKLTKSSGSEYKGYVPKNKIKDGANDRKNKGGKRRS 646
>gi|50304895|ref|XP_452403.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74690379|sp|Q6CUI6.1|DBP9_KLULA RecName: Full=ATP-dependent RNA helicase DBP9
gi|49641536|emb|CAH01254.1| KLLA0C04576p [Kluyveromyces lactis]
Length = 594
Score = 341 bits (875), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 194/532 (36%), Positives = 312/532 (58%), Gaps = 67/532 (12%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNK-DVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
QAI +G+ PTLIQ AIPL LQ K D++ +A TGSGKT A+ IP+IQ I++ K+ Q
Sbjct: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
Query: 90 QE--TKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISE-QVDVSVQEPLLVERPDI 146
E T ++L P++EL Q+ + +++L + CS+++KC+++S V ++ + LL E P+I
Sbjct: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEI 147
Query: 147 VVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLP--KLYQAIL 204
++ATPA+ + L A+ +++ L+ ++IDE DLV +FGY++D+ + + LP K Q L
Sbjct: 148 LIATPAKLVDLLDAQDVNI-DRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFL 206
Query: 205 ASATLSEDVLSLKHLILRNPVILKLEEPAI-APVSQLAHYHILAQEDEKATILYTLLKLN 263
SATL++D+ LK R+P ILKL + + ++L Y++ E +K + Y + KL
Sbjct: 207 MSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKLG 266
Query: 264 LVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIAS 323
L++GKT+IFVN +D+ Y+LKL LEQF I +C+LNSELPA +R H V +FN+ +Y ++IA+
Sbjct: 267 LIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIAT 326
Query: 324 DE---------------------KALETPQINSTNNRKRK--------RDKESGVSRGID 354
D+ + ++ + + +N K++ +DKE GVSRG+D
Sbjct: 327 DDTEYIKEEDEDLESEKTEDGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGVSRGVD 386
Query: 355 FQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLRE 414
F+ V+ V+NFD P + Y+HR GRTAR G ++SFV ++ + + + E
Sbjct: 387 FKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFVVPLKEFGKHKPSMIKSAKKDE 446
Query: 415 QDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS--------------- 459
+ L + + F ++PY F++ +V+GF YR +D +R+
Sbjct: 447 KILGRIIKQQAKLG-----FELQPYNFDIKQVEGFRYRMEDGFRAVTQVAIREARIKELK 501
Query: 460 ----------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPPALKK 501
+FE+NP DLE+LRHDK L+ R+Q HL VPDY++P +K
Sbjct: 502 QELLASEKLKRHFEENPHDLESLRHDKELHPARVQQHLKRVPDYLLPETARK 553
>gi|326437945|gb|EGD83515.1| hypothetical protein PTSG_04124 [Salpingoeca sp. ATCC 50818]
Length = 632
Score = 341 bits (875), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 204/520 (39%), Positives = 297/520 (57%), Gaps = 60/520 (11%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQ----T 86
+A ++GW PT IQ I L+ +D+L RARTGSGKTGA+A+P+I ++ K+ T
Sbjct: 26 KASQRMGWSRPTAIQRAVITCALEGRDILARARTGSGKTGAYALPLINAVLKAKEERATT 85
Query: 87 AQVQETK---ALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSV------QE 137
A E ALVL P+KEL +Q ++++ C + V V + S
Sbjct: 86 ASGGEDHGILALVLVPTKELVDQTADTLKQIAAHCEQQVSVVSVVASASSSRSRKKMDDA 145
Query: 138 PLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLP 197
LL + PDIVVATP L+ + K + + +++++DEADL+ ++G++D ++ + LP
Sbjct: 146 SLLTDLPDIVVATPTTVLSKILEKRVVVTDDFKMLVLDEADLILTYGHDDAVRQLSTVLP 205
Query: 198 KLYQAILASATLSEDVLSLK-HLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATIL 256
+ Q IL SAT+SED+ +LK H++LR+P I+KLEE + QL + ++ +++K
Sbjct: 206 SVKQTILLSATMSEDIQALKSHIVLRSPAIIKLEESDLPDDEQLKQHALVCNDEDKYLNF 265
Query: 257 YTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGL 316
Y LL L L+ GKT++FVNTV++CYKLKL+LE+F I +C LNS LPA +R H V QFN+G+
Sbjct: 266 YALLALKLLSGKTLVFVNTVNECYKLKLFLEKFSIRSCALNSRLPANSRRHIVTQFNKGI 325
Query: 317 YDVIIASDEK-ALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIH 375
YD+IIASDE + +I N + D E GV RG+DF+ V+NV+NFDFP ++ Y+H
Sbjct: 326 YDIIIASDETDGNQGKKIKPRNAKFVASDNEYGVVRGVDFKDVTNVVNFDFPPTVERYVH 385
Query: 376 RAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVS--LREQDLMNDVNEYLMTNLHE-- 431
R GRTARG+ G ALSFV R++ +AL V L+EQ D ++ + E
Sbjct: 386 RVGRTARGRQSGIALSFVDPRQR------SALHRVEKFLQEQAKAQDDDDEDVDGNDEGG 439
Query: 432 ---------DDFIIKPYQFNLDEVKGFEYRAKDAWR------------------------ 458
D IIKPY +D VK +YR DA
Sbjct: 440 KAETEIDAQDGEIIKPYTIKVDVVKPLKYRVDDAIAHVTKRDIDLAIRRDIELQLLNSET 499
Query: 459 -SNYFEDNPTDLETLRHDKALYTVR-IQSHLADVPDYIVP 496
+F +NP DL+ LRHD L+ V+ I+ HL D+P Y+ P
Sbjct: 500 LKAHFVENPRDLQVLRHDTVLHDVKDIKPHLKDLPFYLKP 539
>gi|380494042|emb|CCF33441.1| ATP-dependent RNA helicase DBP9 [Colletotrichum higginsianum]
Length = 594
Score = 341 bits (875), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 190/509 (37%), Positives = 293/509 (57%), Gaps = 49/509 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
+QA+A + +PT +Q++AIPL L KDV+ +A GSGKT A+ +P++ I+ K T
Sbjct: 41 VQAVAAESFKDPTPVQQKAIPLALDGKDVVAKAPCGSGKTAAYVLPVLSSILKRKTTDSS 100
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T AL+L P++EL +Q+ K I++ + C++D+ + + +++ +VQ LL PD+V++
Sbjct: 101 PATTALILVPTRELADQVLKAIEQFSAYCAKDIHAIKLVDKISDAVQRSLLSNFPDVVIS 160
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TPA A ++ ++ L L +L +I+DEADL+ S+GY +D++ + + LPK Q + SATL
Sbjct: 161 TPATAWRNIVSEALSL-DNLTCMILDEADLILSYGYNEDLENIARKLPKGVQLTMMSATL 219
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
S DV SL+ + R P +L L++ S L+ + + EDEK + + + KL LV+GK
Sbjct: 220 STDVTSLQGIFGRKPTVLDLDDEETEGDS-LSQFVVSCGEDEKFLLAFIIFKLKLVKGKC 278
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA-- 327
+IFVN VD+ Y+LKL+LEQF++ +C+LNSELP +R H + +FN+G+YD+IIASDEK+
Sbjct: 279 LIFVNDVDRSYRLKLFLEQFQVRSCILNSELPVTSRAHVLEEFNRGVYDIIIASDEKSAM 338
Query: 328 -LETPQINSTNNRKR--------------KRDKESGVSRGIDFQFVSNVINFDFPLDIQC 372
E + ++ KRD E GVSRGIDF+ V+ V+NFD P
Sbjct: 339 GAEEKDVEGEEGTEQPEKEKEQSKKKRKSKRDAEFGVSRGIDFKNVAAVVNFDLPTSASS 398
Query: 373 YIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHED 432
Y HR GRTAR G ALSF E + T++ + ++ ++ + + E
Sbjct: 399 YTHRIGRTARAGRTGMALSFYVPSELYRKHLPTSIE-TAENDEKILARIKKQQAKQGKE- 456
Query: 433 DFIIKPYQFNLDEVKGFEYRAKDAWRS-------------------------NYFEDNPT 467
+KPY F + + F YR DA R+ YFE+NPT
Sbjct: 457 ---VKPYNFKKEHLDAFRYRLDDALRAVTKVAVREARMRELKQELLKSEKLKRYFEENPT 513
Query: 468 DLETLRHDKALYTVRIQSHLADVPDYIVP 496
+L+ LRHD L T R Q HL +P+Y++P
Sbjct: 514 ELQHLRHDGELRTARQQPHLKHIPEYLLP 542
>gi|349579984|dbj|GAA25145.1| K7_Dbp9p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 594
Score = 341 bits (874), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 202/548 (36%), Positives = 314/548 (57%), Gaps = 68/548 (12%)
Query: 16 YFELPFTFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNK-DVLVRARTGSGKTGA 71
Y + TF F + LQAI +G+ PTLIQ AIPL LQ K D++ +A TGSGKT A
Sbjct: 12 YIDDSTTFEAFHLDSRLLQAIKNIGFQYPTLIQSHAIPLALQQKRDIIAKAATGSGKTLA 71
Query: 72 FAIPMIQKIINLKQTAQVQE---TKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDIS 128
+ IP+I+ I+ K+T E T ++L P++EL Q++ +++L + CS+D++ ++IS
Sbjct: 72 YLIPVIETILEYKKTIDNGEENGTLGIILVPTRELAQQVYNVLEKLVLYCSKDIRTLNIS 131
Query: 129 EQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLK-SSLEIVIIDEADLVFSFGYED 187
+ SV LL+++P+I+V TP + L L+ K + + L+ +++DE DLV +FGY+D
Sbjct: 132 SDMSDSVLSTLLMDQPEIIVGTPGKLLDLLQTKINSISLNELKFLVVDEVDLVLTFGYQD 191
Query: 188 DMKAVLKFLP--KLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAP-VSQLAHYH 244
D+ + ++LP K Q L SATL++D+ +LK R+P ILK + I ++L Y+
Sbjct: 192 DLNKIGEYLPLKKNLQTFLMSATLNDDIQALKQKFCRSPAILKFNDEEINKNQNKLLQYY 251
Query: 245 ILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKA 304
+ E +K + Y + KLNL++GKT+IFVN +D+ Y+LKL +EQF I +C+LNSELP +
Sbjct: 252 VKVSEFDKFLLCYVIFKLNLIKGKTLIFVNNIDRGYRLKLVMEQFGIKSCILNSELPVNS 311
Query: 305 RCHAVYQFNQGLYDVIIASD----------------------EKALETPQIN-----STN 337
R H V QFN+ +Y ++IA+D EK+LE N
Sbjct: 312 RQHIVDQFNKNVYQLLIATDDTEYIKEEDDEIEEGHNTEDQEEKSLEGEPENDKKPSKKK 371
Query: 338 NRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLRE 397
+ K+DKE GVSRG+DF+ V+ V+NFD P + Y+HR GRTARG GTA+SFV +
Sbjct: 372 KVQVKKDKEYGVSRGVDFKNVACVLNFDLPTTAKSYVHRVGRTARGGKTGTAISFVVPLK 431
Query: 398 QDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAW 457
+ + + L E+ L + + L ++PY+F+ +V+ F YR +D +
Sbjct: 432 EFGKHKPSMLQTAKKDERILSRIIKQQSKLGLE-----LQPYKFDQKQVEAFRYRMEDGF 486
Query: 458 RS-------------------------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPD 492
R+ +FE+NP +L++LRHDK L+ R+Q HL VPD
Sbjct: 487 RAVTQVAIREARVKELKQELLASEKLKRHFEENPKELQSLRHDKELHPARVQQHLKRVPD 546
Query: 493 YIVPPALK 500
Y++P + +
Sbjct: 547 YLLPESAR 554
>gi|448103033|ref|XP_004199934.1| Piso0_002489 [Millerozyma farinosa CBS 7064]
gi|359381356|emb|CCE81815.1| Piso0_002489 [Millerozyma farinosa CBS 7064]
Length = 572
Score = 341 bits (874), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 193/521 (37%), Positives = 307/521 (58%), Gaps = 61/521 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNK-DVLVRARTGSGKTGAFAIPMIQKIINLKQTAQ 88
+QAI +G+ PT +Q AIPL L+ K D++ +A TGSGKT A+ IP++ + T++
Sbjct: 27 VQAIDHVGFSNPTYVQSSAIPLALEEKRDIIAKASTGSGKTAAYCIPILNNLF----TSE 82
Query: 89 VQET--KALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDI 146
+E K+++L P++EL +Q+ K +++L + S V +++S + V LL+ +PDI
Sbjct: 83 TEEKSIKSVILVPTRELSSQVTKFLEQLLLFNSDKVSVLNLSSNISEQVLNSLLINKPDI 142
Query: 147 VVATPARALAHLK----AKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLP--KLY 200
V++TPA+ L L+ + ++L S ++ + IDE DLV S+GY DD++ + +LP K
Sbjct: 143 VISTPAKLLQFLEKNVNSNLINL-SKVQSLTIDEVDLVISYGYSDDLQKLGAYLPAKKNL 201
Query: 201 QAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLL 260
Q L SAT++++V LK P ILKL++ A + L Y+ E +K + Y +
Sbjct: 202 QTYLMSATINDEVNELKSRFCTKPAILKLDDDE-ATQNNLVQYYAKTTEFDKFLLAYVIF 260
Query: 261 KLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVI 320
KLNL++GKTIIFVN +D+ Y+LKL+LEQF I +C+LNSELP +R H V +FN+ +Y ++
Sbjct: 261 KLNLIKGKTIIFVNNIDRGYRLKLFLEQFGIRSCILNSELPVNSRIHIVEEFNKNVYKLL 320
Query: 321 IASDEKALETPQIN----------------STNNRKRKRDKESGVSRGIDFQFVSNVINF 364
IA+DE + +++ ST + K+ KE GVSRG+DF+ V+ V+NF
Sbjct: 321 IATDENSNNRSEMDVDSDQEQDEAQENDKKSTKSNKQNNGKEYGVSRGVDFKNVACVLNF 380
Query: 365 DFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEY 424
D P + YIHR GRTAR G ALSFV + +++ TA + +++ ++ +
Sbjct: 381 DLPTSSKAYIHRIGRTARAGKSGMALSFV-IPLKEVGKHKTACLKTAKKDEKILRRI--- 436
Query: 425 LMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS------------------------- 459
+ F IKPYQF++ +V+GF YRA+DA+R+
Sbjct: 437 -VKQQSRSGFDIKPYQFDMKQVEGFRYRAEDAFRAVTSVSIKEARYKELKEEILTSDKLK 495
Query: 460 NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPPALK 500
+FE+NP DL LRHDK L+ ++Q+HL VP+Y++P + +
Sbjct: 496 RFFEENPQDLSALRHDKELHPAKVQAHLKRVPEYLLPESAR 536
>gi|323303814|gb|EGA57597.1| Dbp9p [Saccharomyces cerevisiae FostersB]
Length = 594
Score = 341 bits (874), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 202/548 (36%), Positives = 314/548 (57%), Gaps = 68/548 (12%)
Query: 16 YFELPFTFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNK-DVLVRARTGSGKTGA 71
Y + TF F + LQAI +G+ PTLIQ AIPL LQ K D++ +A TGSGKT A
Sbjct: 12 YIDDSTTFEAFHLDSRLLQAIKNIGFQYPTLIQSHAIPLALQQKRDIIAKAATGSGKTLA 71
Query: 72 FAIPMIQKIINLKQTAQVQE---TKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDIS 128
+ IP+I+ I+ K+T E T ++L P++EL Q++ +++L + CS+D++ ++IS
Sbjct: 72 YLIPVIETILEYKKTIDNGEENGTLGIILVPTRELAQQVYNVLEKLVLYCSKDIRTLNIS 131
Query: 129 EQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLK-SSLEIVIIDEADLVFSFGYED 187
+ SV LL+++P+I+V TP + L L+ K + + L+ +++DE DLV +FGY+D
Sbjct: 132 SDMSDSVLSTLLMDQPEIIVGTPGKLLDLLQTKINSISLNELKFLVVDEVDLVLTFGYQD 191
Query: 188 DMKAVLKFLP--KLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAP-VSQLAHYH 244
D+ + ++LP K Q L SATL++D+ +LK R+P ILK + I ++L Y+
Sbjct: 192 DLNKIGEYLPLKKNLQTFLMSATLNDDIQALKQKFCRSPAILKFNDEEINKNQNKLLQYY 251
Query: 245 ILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKA 304
+ E +K + Y + KLNL++GKT+IFVN +D+ Y+LKL +EQF I +C+LNSELP +
Sbjct: 252 VKVSEFDKFLLCYVIFKLNLIKGKTLIFVNNIDRGYRLKLVMEQFGIKSCILNSELPVNS 311
Query: 305 RCHAVYQFNQGLYDVIIASD----------------------EKALETPQIN-----STN 337
R H V QFN+ +Y ++IA+D EK+LE N
Sbjct: 312 RQHIVDQFNKNVYQLLIATDDTEYIKEEDDEIEEGHNTENQEEKSLEGEPENDKKPSKKK 371
Query: 338 NRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLRE 397
+ K+DKE GVSRG+DF+ V+ V+NFD P + Y+HR GRTARG GTA+SFV +
Sbjct: 372 KVQVKKDKEYGVSRGVDFKNVACVLNFDLPTTAKSYVHRVGRTARGGKTGTAISFVVPLK 431
Query: 398 QDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAW 457
+ + + L E+ L + + L ++PY+F+ +V+ F YR +D +
Sbjct: 432 EFGKHKPSMLQTAKKDERILSRIIKQQSKLGLE-----LQPYKFDQKQVEAFRYRMEDGF 486
Query: 458 RS-------------------------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPD 492
R+ +FE+NP +L++LRHDK L+ R+Q HL VPD
Sbjct: 487 RAVTQVAIREARVKELKQELLASEKLKRHFEENPKELQSLRHDKELHPARVQQHLKRVPD 546
Query: 493 YIVPPALK 500
Y++P + +
Sbjct: 547 YLLPESAR 554
>gi|241956492|ref|XP_002420966.1| ATP-dependent RNA helicase, putative; ribosome biogenesis protein,
putative [Candida dubliniensis CD36]
gi|223644309|emb|CAX41122.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
Length = 570
Score = 341 bits (874), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 207/521 (39%), Positives = 304/521 (58%), Gaps = 64/521 (12%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNK-DVLVRARTGSGKTGAFAIPMIQKIINLKQTAQ 88
LQAI +LG+ PTLIQ AIPL L+ K D++ +A TGSGKT A+ IP++ NL
Sbjct: 26 LQAIDQLGFSNPTLIQSSAIPLALEEKRDIIAKASTGSGKTAAYCIPIVN---NLLTNDS 82
Query: 89 VQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
Q K+++L P++EL NQ+ + I++L + + + +++S V LLV +P+I++
Sbjct: 83 TQGIKSIILVPTRELSNQVFQFIEKLLIFSNNKINILNLSSSYSDQVLNSLLVNKPEIII 142
Query: 149 ATPARALAHLKA--KTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLP--KLYQAIL 204
+TPA+ + L+ K +DL ++++ + IDE DLV SFGY DD+K + +LP K Q L
Sbjct: 143 STPAKLIQILEKNEKNIDL-TTVKNLTIDEVDLVLSFGYLDDLKKLESYLPVKKNLQTFL 201
Query: 205 ASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNL 264
SAT+++D+ LK P ILKL E A A ++L Y+ E +K + Y + KLNL
Sbjct: 202 MSATVNDDLDDLKQRYCTKPAILKLNEDA-ASQNKLVQYYAKTTEFDKFLLAYVIFKLNL 260
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
++GKTI FVN +D+ Y+LKL+LEQF I C+LNSELP +R H V +FN+ +Y ++IA+D
Sbjct: 261 IKGKTIAFVNNIDRGYRLKLFLEQFGIRCCILNSELPINSRLHIVEEFNKNVYHLLIATD 320
Query: 325 EKALETPQIN--------------------STNNRKRKRDKESGVSRGIDFQFVSNVINF 364
ET ++N + K K+DKE GVSRG+DF+ V+ V+NF
Sbjct: 321 ----ETNELNEEQDEDDDDEGEGEIETKSKKSKKSKFKQDKEYGVSRGVDFRNVACVLNF 376
Query: 365 DFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEY 424
D P + YIHR GRTAR G ALSFV L + TA S S ++ + V
Sbjct: 377 DLPTSSKAYIHRIGRTARAGKAGMALSFV-LPLSEFGKHKTA-SLPSAKKDE---KVLRR 431
Query: 425 LMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS------------------------- 459
++ ++ F IKPYQF++ +V+GF YRA DA+R+
Sbjct: 432 IVKQQSKNGFEIKPYQFDMKQVEGFRYRADDAFRAVTQTVVREARVKELKNELINSEKLK 491
Query: 460 NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPPALK 500
+FE+NP DL +LRHDK L+ RIQS L +VP Y++P + +
Sbjct: 492 RFFEENPQDLASLRHDKELHPARIQSQLKNVPQYLLPESAR 532
>gi|6323306|ref|NP_013378.1| Dbp9p [Saccharomyces cerevisiae S288c]
gi|2500536|sp|Q06218.1|DBP9_YEAST RecName: Full=ATP-dependent RNA helicase DBP9; AltName: Full=DEAD
box protein 9
gi|160380635|sp|A7A1G0.1|DBP9_YEAS7 RecName: Full=ATP-dependent RNA helicase DBP9; AltName: Full=DEAD
box protein 9
gi|577189|gb|AAB67366.1| Ylr276cp [Saccharomyces cerevisiae]
gi|151940983|gb|EDN59364.1| DEAD box protein [Saccharomyces cerevisiae YJM789]
gi|190405335|gb|EDV08602.1| hypothetical protein SCRG_04227 [Saccharomyces cerevisiae RM11-1a]
gi|207342874|gb|EDZ70505.1| YLR276Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256269829|gb|EEU05089.1| Dbp9p [Saccharomyces cerevisiae JAY291]
gi|259148259|emb|CAY81506.1| Dbp9p [Saccharomyces cerevisiae EC1118]
gi|285813693|tpg|DAA09589.1| TPA: Dbp9p [Saccharomyces cerevisiae S288c]
gi|323336336|gb|EGA77604.1| Dbp9p [Saccharomyces cerevisiae Vin13]
gi|392297784|gb|EIW08883.1| Dbp9p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 594
Score = 341 bits (874), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 202/548 (36%), Positives = 314/548 (57%), Gaps = 68/548 (12%)
Query: 16 YFELPFTFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNK-DVLVRARTGSGKTGA 71
Y + TF F + LQAI +G+ PTLIQ AIPL LQ K D++ +A TGSGKT A
Sbjct: 12 YIDDSTTFEAFHLDSRLLQAIKNIGFQYPTLIQSHAIPLALQQKRDIIAKAATGSGKTLA 71
Query: 72 FAIPMIQKIINLKQTAQVQE---TKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDIS 128
+ IP+I+ I+ K+T E T ++L P++EL Q++ +++L + CS+D++ ++IS
Sbjct: 72 YLIPVIETILEYKKTIDNGEENGTLGIILVPTRELAQQVYNVLEKLVLYCSKDIRTLNIS 131
Query: 129 EQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLK-SSLEIVIIDEADLVFSFGYED 187
+ SV LL+++P+I+V TP + L L+ K + + L+ +++DE DLV +FGY+D
Sbjct: 132 SDMSDSVLSTLLMDQPEIIVGTPGKLLDLLQTKINSISLNELKFLVVDEVDLVLTFGYQD 191
Query: 188 DMKAVLKFLP--KLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAP-VSQLAHYH 244
D+ + ++LP K Q L SATL++D+ +LK R+P ILK + I ++L Y+
Sbjct: 192 DLNKIGEYLPLKKNLQTFLMSATLNDDIQALKQKFCRSPAILKFNDEEINKNQNKLLQYY 251
Query: 245 ILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKA 304
+ E +K + Y + KLNL++GKT+IFVN +D+ Y+LKL +EQF I +C+LNSELP +
Sbjct: 252 VKVSEFDKFLLCYVIFKLNLIKGKTLIFVNNIDRGYRLKLVMEQFGIKSCILNSELPVNS 311
Query: 305 RCHAVYQFNQGLYDVIIASD----------------------EKALETPQIN-----STN 337
R H V QFN+ +Y ++IA+D EK+LE N
Sbjct: 312 RQHIVDQFNKNVYQLLIATDDTEYIKEEDDEIEEGHNTENQEEKSLEGEPENDKKPSKKK 371
Query: 338 NRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLRE 397
+ K+DKE GVSRG+DF+ V+ V+NFD P + Y+HR GRTARG GTA+SFV +
Sbjct: 372 KVQVKKDKEYGVSRGVDFKNVACVLNFDLPTTAKSYVHRVGRTARGGKTGTAISFVVPLK 431
Query: 398 QDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAW 457
+ + + L E+ L + + L ++PY+F+ +V+ F YR +D +
Sbjct: 432 EFGKHKPSMLQTAKKDERILSRIIKQQSKLGLE-----LQPYKFDQKQVEAFRYRMEDGF 486
Query: 458 RS-------------------------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPD 492
R+ +FE+NP +L++LRHDK L+ R+Q HL VPD
Sbjct: 487 RAVTQVAIREARVKELKQELLASEKLKRHFEENPKELQSLRHDKELHPARVQQHLKRVPD 546
Query: 493 YIVPPALK 500
Y++P + +
Sbjct: 547 YLLPESAR 554
>gi|323347358|gb|EGA81630.1| Dbp9p [Saccharomyces cerevisiae Lalvin QA23]
gi|365764102|gb|EHN05627.1| Dbp9p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 594
Score = 340 bits (873), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 202/548 (36%), Positives = 314/548 (57%), Gaps = 68/548 (12%)
Query: 16 YFELPFTFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNK-DVLVRARTGSGKTGA 71
Y + TF F + LQAI +G+ PTLIQ AIPL LQ K D++ +A TGSGKT A
Sbjct: 12 YIDDSTTFEAFHLDSRLLQAIKNIGFQYPTLIQSHAIPLALQQKRDIIAKAATGSGKTLA 71
Query: 72 FAIPMIQKIINLKQTAQVQE---TKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDIS 128
+ IP+I+ I+ K+T E T ++L P++EL Q++ +++L + CS+D++ ++IS
Sbjct: 72 YLIPVIETILEYKKTIDNGEENGTLGIILVPTRELAQQVYNVLEKLVLYCSKDIRTLNIS 131
Query: 129 EQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLK-SSLEIVIIDEADLVFSFGYED 187
+ SV LL+++P+I+V TP + L L+ K + + L+ +++DE DLV +FGY+D
Sbjct: 132 SDMSDSVLSTLLMDQPEIIVGTPGKLLDLLQTKINSISLNELKFLVVDEVDLVLTFGYQD 191
Query: 188 DMKAVLKFLP--KLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAP-VSQLAHYH 244
D+ + ++LP K Q L SATL++D+ +LK R+P ILK + I ++L Y+
Sbjct: 192 DLNKIGEYLPLKKNLQTFLMSATLNDDIQALKQKFCRSPAILKFNDEEINKNQNKLLQYY 251
Query: 245 ILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKA 304
+ E +K + Y + KLNL++GKT+IFVN +D+ Y+LKL +EQF I +C+LNSELP +
Sbjct: 252 VKVSEFDKFLLCYVIFKLNLIKGKTLIFVNNIDRGYRLKLVMEQFGIKSCILNSELPVNS 311
Query: 305 RCHAVYQFNQGLYDVIIASD----------------------EKALETPQIN-----STN 337
R H V QFN+ +Y ++IA+D EK+LE N
Sbjct: 312 RQHIVDQFNKNVYQLLIATDDXEYIKEEDDEIEEGHNTENQEEKSLEGEPENDKKPSKKK 371
Query: 338 NRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLRE 397
+ K+DKE GVSRG+DF+ V+ V+NFD P + Y+HR GRTARG GTA+SFV +
Sbjct: 372 KVQVKKDKEYGVSRGVDFKNVACVLNFDLPTTAKSYVHRVGRTARGGKTGTAISFVVPLK 431
Query: 398 QDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAW 457
+ + + L E+ L + + L ++PY+F+ +V+ F YR +D +
Sbjct: 432 EFGKHKPSMLQTAKKDERILSRIIKQQSKLGLE-----LQPYKFDQKQVEAFRYRMEDGF 486
Query: 458 RS-------------------------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPD 492
R+ +FE+NP +L++LRHDK L+ R+Q HL VPD
Sbjct: 487 RAVTQVAIREARVKELKQELLASEKLKRHFEENPKELQSLRHDKELHPARVQQHLKRVPD 546
Query: 493 YIVPPALK 500
Y++P + +
Sbjct: 547 YLLPESAR 554
>gi|51830470|gb|AAU09764.1| YLR276C [Saccharomyces cerevisiae]
Length = 594
Score = 340 bits (873), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 198/531 (37%), Positives = 308/531 (58%), Gaps = 65/531 (12%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNK-DVLVRARTGSGKTGAFAIPMIQKIINLKQTAQ 88
LQAI +G+ PTLIQ AIPL LQ K D++ +A TGSGKT A+ IP+I+ I+ K+T
Sbjct: 29 LQAIKNIGFQYPTLIQSHAIPLALQQKRDIIAKAATGSGKTLAYLIPVIETILEYKKTID 88
Query: 89 VQE---TKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPD 145
E T ++L P++EL Q++ +++L + CS+D++ ++IS + SV LL+++P+
Sbjct: 89 NGEENGTLGIILVPTRELAQQVYNVLEKLVLYCSKDIRTLNISSDMSDSVLSTLLMDQPE 148
Query: 146 IVVATPARALAHLKAKTLDLK-SSLEIVIIDEADLVFSFGYEDDMKAVLKFLP--KLYQA 202
I+V TP + L L+ K + + L+ +++DE DLV +FGY+DD+ + ++LP K Q
Sbjct: 149 IIVGTPGKLLDLLQTKINSISLNELKFLVVDEVDLVLTFGYQDDLNKIGEYLPLKKNLQT 208
Query: 203 ILASATLSEDVLSLKHLILRNPVILKLEEPAIAP-VSQLAHYHILAQEDEKATILYTLLK 261
L SATL++D+ +LK R+P ILK + I ++L Y++ E +K + Y + K
Sbjct: 209 FLMSATLNDDIQALKQKFCRSPAILKFNDEEINKNQNKLLQYYVKVSEFDKFLLCYVIFK 268
Query: 262 LNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVII 321
LNL++GKT+IFVN +D+ Y+LKL +EQF I +C+LNSELP +R H V QFN+ +Y ++I
Sbjct: 269 LNLIKGKTLIFVNNIDRGYRLKLVMEQFGIKSCILNSELPVNSRQHIVDQFNKNVYQLLI 328
Query: 322 ASD----------------------EKALETPQIN-----STNNRKRKRDKESGVSRGID 354
A+D EK+LE N + K+DKE GVSRG+D
Sbjct: 329 ATDDTEYIKEEDDEIEEGHNTENQEEKSLEGEPENDKKPSKKKKVQVKKDKEYGVSRGVD 388
Query: 355 FQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLRE 414
F+ V+ V+NFD P + Y+HR GRTARG GTA+SFV ++ + + L E
Sbjct: 389 FKNVACVLNFDLPTTAKSYVHRVGRTARGGKTGTAISFVVPLKEFGKHKPSMLQTAKKDE 448
Query: 415 QDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS--------------- 459
+ L + + L ++PY+F+ +V+ F YR +D +R+
Sbjct: 449 RILSRIIKQQSKLGLE-----LQPYKFDQKQVEAFRYRMEDGFRAVTQVAIREARVKELK 503
Query: 460 ----------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPPALK 500
+FE+NP +L++LRHDK L+ R+Q HL VPDY++P + +
Sbjct: 504 QELLASEKLKRHFEENPKELQSLRHDKELHPARVQQHLKRVPDYLLPESAR 554
>gi|380091313|emb|CCC11170.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 680
Score = 340 bits (872), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 196/508 (38%), Positives = 293/508 (57%), Gaps = 47/508 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
+QA+AK + +PTL+Q +AIPL L +DVL +A TGSGKT A+ +P++ I+ K T
Sbjct: 119 VQAVAKQSFEKPTLVQRKAIPLALAGQDVLCKANTGSGKTAAYVLPVLSGILKRKATDSA 178
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T AL+L P++EL +Q+HK I + C++D++ +++ V +V LL PD++V+
Sbjct: 179 PFTSALILVPTRELADQVHKAIDAFSAFCTKDIQSAKLTDNVSDAVLRSLLANAPDVIVS 238
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPK-LYQAILASAT 208
TPARA ++++ L + + L+ +++DEADLV S+GY++DM+ + + LPK Q + SAT
Sbjct: 239 TPARAWHNIESGALSV-AKLQYLVLDEADLVLSYGYDEDMENIARSLPKGGVQTTMMSAT 297
Query: 209 LSEDVL-SLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
L D L +LK RNP +L L+E A +L +++ ED+K I Y + KL L++G
Sbjct: 298 LVSDELDTLKGFFCRNPTMLDLKESFSAEDEKLTQFYVKCGEDDKWLISYLIFKLQLIKG 357
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
++FV +D+ Y+LKL+ EQF I +CVLNSELP R + +FN+G+YD+IIASDE++
Sbjct: 358 PCLVFVADIDRAYRLKLFFEQFSIRSCVLNSELPINTRIKIIEEFNRGIYDIIIASDERS 417
Query: 328 ---------------------LETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDF 366
+ + +K +RD+E GVSRGIDF+ V+ VINFD
Sbjct: 418 EVFLEDEKKTEEKAEKKEDGEDKDKKSGKGKKKKGRRDQEYGVSRGIDFKNVAAVINFDM 477
Query: 367 PLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLM 426
P YIHR GRTAR G ALS V DL S+++ + V +M
Sbjct: 478 PTSSSSYIHRIGRTARAGRAGIALSMVV--PHDLFGKHKP---TSIKQCEKDEKVLAKVM 532
Query: 427 TNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWR-----------------SNYFEDNPTDL 469
+ + ++PY FN D+++ F YR DA R YFE+NP +L
Sbjct: 533 RQQAKLNRKLEPYNFNKDQMEAFRYRMNDAIREARTRELRQELMRSETLKRYFEENPNEL 592
Query: 470 ETLRHDKALYT-VRIQSHLADVPDYIVP 496
LRHD L T +R Q+HL VPDY++P
Sbjct: 593 SHLRHDGELGTKMRQQAHLKHVPDYLLP 620
>gi|336266016|ref|XP_003347778.1| hypothetical protein SMAC_03876 [Sordaria macrospora k-hell]
Length = 680
Score = 340 bits (872), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 196/508 (38%), Positives = 293/508 (57%), Gaps = 47/508 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
+QA+AK + +PTL+Q +AIPL L +DVL +A TGSGKT A+ +P++ I+ K T
Sbjct: 119 VQAVAKQSFEKPTLVQRKAIPLALAGQDVLCKANTGSGKTAAYVLPVLSGILKRKATDSA 178
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T AL+L P++EL +Q+HK I + C++D++ +++ V +V LL PD++V+
Sbjct: 179 PFTSALILVPTRELADQVHKAIDAFSAFCTKDIQSAKLTDNVSDAVLRSLLANAPDVIVS 238
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPK-LYQAILASAT 208
TPARA ++++ L + + L+ +++DEADLV S+GY++DM+ + + LPK Q + SAT
Sbjct: 239 TPARAWHNIESGALSV-AKLQYLVLDEADLVLSYGYDEDMENIARSLPKGGVQTTMMSAT 297
Query: 209 LSEDVL-SLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
L D L +LK RNP +L L+E A +L +++ ED+K I Y + KL L++G
Sbjct: 298 LVSDELDTLKGFFCRNPTMLDLKESFSAEDEKLTQFYVKCGEDDKWLISYLIFKLQLIKG 357
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
++FV +D+ Y+LKL+ EQF I +CVLNSELP R + +FN+G+YD+IIASDE++
Sbjct: 358 PCLVFVADIDRAYRLKLFFEQFSIRSCVLNSELPINTRIKIIEEFNRGIYDIIIASDERS 417
Query: 328 ---------------------LETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDF 366
+ + +K +RD+E GVSRGIDF+ V+ VINFD
Sbjct: 418 EVFLEDEKKTEEKVEKKEDGEDKDKKSGKGKKKKGRRDQEYGVSRGIDFKNVAAVINFDM 477
Query: 367 PLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLM 426
P YIHR GRTAR G ALS V DL S+++ + V +M
Sbjct: 478 PTSSSSYIHRIGRTARAGRAGIALSMVV--PHDLFGKHKP---TSIKQCEKDEKVLAKVM 532
Query: 427 TNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWR-----------------SNYFEDNPTDL 469
+ + ++PY FN D+++ F YR DA R YFE+NP +L
Sbjct: 533 RQQAKLNRKLEPYNFNKDQMEAFRYRMNDAIREARTRELRQELMRSETLKRYFEENPNEL 592
Query: 470 ETLRHDKALYT-VRIQSHLADVPDYIVP 496
LRHD L T +R Q+HL VPDY++P
Sbjct: 593 SHLRHDGELGTKMRQQAHLKHVPDYLLP 620
>gi|389629680|ref|XP_003712493.1| ATP-dependent RNA helicase DBP9 [Magnaporthe oryzae 70-15]
gi|152013498|sp|A4QTR1.1|DBP9_MAGO7 RecName: Full=ATP-dependent RNA helicase DBP9
gi|351644825|gb|EHA52686.1| ATP-dependent RNA helicase DBP9 [Magnaporthe oryzae 70-15]
gi|440475945|gb|ELQ44591.1| ATP-dependent RNA helicase dbp9 [Magnaporthe oryzae Y34]
gi|440487798|gb|ELQ67573.1| ATP-dependent RNA helicase dbp9 [Magnaporthe oryzae P131]
Length = 636
Score = 340 bits (872), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 198/536 (36%), Positives = 297/536 (55%), Gaps = 71/536 (13%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQ-TAQ 88
LQA+A+ + +PTL+Q +AIPL L+ +DVL +A+TGSGKT A+ +P++Q ++ KQ
Sbjct: 55 LQAVAQQSFQKPTLVQSKAIPLALEGRDVLAKAKTGSGKTAAYVLPILQAVLKRKQINPG 114
Query: 89 VQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLL-VERPDIV 147
+L+L P++EL Q+ K ++ + C+++V+ V ++++V +VQ LL PDIV
Sbjct: 115 ATYISSLILVPTRELTVQVTKEVERFSAFCAKEVQVVGLTDKVSDAVQRSLLQSSSPDIV 174
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
V+TP+ A ++ + L L L +++DEADLV S+GY++D++ V + LPK Q ++ SA
Sbjct: 175 VSTPSTAWRNVDSGALSL-DKLTHLVLDEADLVLSYGYDEDLEKVARGLPKGVQTVMTSA 233
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
TL++++ +LK + LR+PV+L LEEP A S++ Y + EDEK + Y L KL L++G
Sbjct: 234 TLTDEIDTLKGIFLRDPVLLDLEEPD-AEGSEITQYIVKCGEDEKFLLAYILFKLQLIKG 292
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
K IIFV VD+CY+LKL+ EQF I +C+LNSELP +R V +FN+ +YD+IIASDE
Sbjct: 293 KVIIFVADVDRCYRLKLFFEQFGIRSCILNSELPVNSRISVVEEFNRNVYDIIIASDENE 352
Query: 328 L----ETPQINSTNNRKRKRDKES--------------------------------GVSR 351
+ + P N + + DK+ GVSR
Sbjct: 353 MMGDEDRPAPNGDGKEEAEVDKKHENEDEGQDGEASKAAPRPKKKRKMDRKRDKQYGVSR 412
Query: 352 GIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVS 411
GIDF+ V+ V+NFD PL Y HR GRT R G LSF +E + T++
Sbjct: 413 GIDFKNVAVVVNFDLPLSSTSYTHRIGRTGRAGQAGMVLSFYVPKELFRKHIPTSIDSAE 472
Query: 412 LREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS------------ 459
E+ L + + IKPY F+ D+V+ F YR DA R+
Sbjct: 473 NDEKVLARVIKQQKKLGRE-----IKPYNFDRDQVESFRYRMNDALRAVTKIAVREARTR 527
Query: 460 -------------NYFEDNPTDLETL-RHDKALYTVRIQSHLADVPDYIVPPALKK 501
+FE+NP +L+ L RHD L T R L VPDY++P +K
Sbjct: 528 ELRQELLKSEKLKRHFEENPAELQHLVRHDGELRTARANPELRHVPDYLLPKEGRK 583
>gi|310795147|gb|EFQ30608.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
Length = 594
Score = 339 bits (869), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 192/509 (37%), Positives = 292/509 (57%), Gaps = 49/509 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
+QA+A + EPT +Q++AIPL L KDV+ +A GSGKT A+ +P++ I+ K T
Sbjct: 41 VQAVAAESFKEPTPVQQKAIPLALDGKDVVAKAPCGSGKTAAYVLPVLSSILKRKTTDSS 100
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T AL+L P++EL +Q+ K I++ + C++D+ + + +++ +VQ LL PD+V++
Sbjct: 101 PATTALILVPTRELADQVLKAIEKFSAYCAKDIHAIKLVDKISDAVQRSLLSNFPDVVIS 160
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TPA A ++ ++ L L +L +++DEADL+ S+GY +D++ + + LPK Q + SATL
Sbjct: 161 TPATAWRNIVSEAL-LLGNLTSIVLDEADLIMSYGYNEDLENIARKLPKGVQLTMMSATL 219
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
S DV +L+ R P IL L++ S L+ + + EDEK + + + KL LV+GK
Sbjct: 220 STDVTTLQGTFGRKPTILDLDDEETEGDS-LSQFVVSCGEDEKFLLAFIIFKLKLVKGKC 278
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK--- 326
+IFVN VD+ Y+LKL+LEQF++ +C+LNSELP +R H + +FN+G+YD+IIASDEK
Sbjct: 279 LIFVNDVDRSYRLKLFLEQFQVRSCILNSELPVTSRAHVLEEFNRGVYDIIIASDEKSAM 338
Query: 327 -ALETPQINSTNNRKR-------------KRDKESGVSRGIDFQFVSNVINFDFPLDIQC 372
A E + +R KRD E GVSRGIDF+ V+ V+NFD P
Sbjct: 339 GAEEKDGEEEEDTEQRQKEKEQSKKKRKSKRDSEFGVSRGIDFKNVAAVVNFDLPTSASS 398
Query: 373 YIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHED 432
Y HR GRTAR G ALSF E + T++ + ++ ++ + + E
Sbjct: 399 YTHRIGRTARAGRTGMALSFYVPTELYRKHLPTSIE-TAEHDEKILARIKKQQAKQGKE- 456
Query: 433 DFIIKPYQFNLDEVKGFEYRAKDAWRS-------------------------NYFEDNPT 467
+KPY F + + F YR DA R+ YFE+NPT
Sbjct: 457 ---VKPYSFKKEHLDAFRYRLNDALRAVTKVAVREARMRELKQELLKSEKLKRYFEENPT 513
Query: 468 DLETLRHDKALYTVRIQSHLADVPDYIVP 496
+L+ LRHD L T R Q HL +P+Y++P
Sbjct: 514 ELQHLRHDGELRTARQQPHLKHIPEYLLP 542
>gi|3850123|emb|CAA21924.1| dead box helicase [Candida albicans]
Length = 574
Score = 339 bits (869), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 201/522 (38%), Positives = 303/522 (58%), Gaps = 60/522 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNK-DVLVRARTGSGKTGAFAIPMIQKIINLKQTAQ 88
LQAI +LG+ PTLIQ AIPL L+ K D++ +A TGSGKT A+ IP++ NL
Sbjct: 26 LQAIDQLGFSNPTLIQSSAIPLALEEKRDIIAKASTGSGKTAAYCIPIVN---NLLTDDS 82
Query: 89 VQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
Q K+++L P++EL NQ+ + +++L + + +++S V LLV +P+I++
Sbjct: 83 SQGIKSIILVPTRELSNQVFQFVEKLLTFSTNKINVLNLSSSYSDQVLNSLLVNKPEIII 142
Query: 149 ATPARALAHLKA--KTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLP--KLYQAIL 204
+TPA+ + L+ K +DL S+++ + IDE DLV SFGY DD+K + +LP K Q L
Sbjct: 143 STPAKLIQILEKNEKNIDL-STVKNLTIDEVDLVLSFGYLDDLKKLESYLPVKKNLQTFL 201
Query: 205 ASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNL 264
SAT+++D+ LK P ILKL E + A + L Y+ E +K + Y + KLNL
Sbjct: 202 MSATVNDDLDDLKQRYCTKPAILKLNEDS-ANQNNLVQYYAKTTEFDKFLLAYVIFKLNL 260
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
++GKTI FVN +D+ Y+LKL+LEQF I C+LNSELP +R H V +FN+ +Y ++IA+D
Sbjct: 261 IKGKTIAFVNNIDRGYRLKLFLEQFGIRCCILNSELPINSRLHIVEEFNKNVYHLLIATD 320
Query: 325 E-KALETPQINSTNNRKRKRDK-------------------ESGVSRGIDFQFVSNVINF 364
E L Q ++ + + +DK E GVSRG+DF+ V+ V+NF
Sbjct: 321 ETNELNEEQDDNEDGDEDTKDKGNAETKPKKSKKSKFKQDKEYGVSRGVDFRNVACVLNF 380
Query: 365 DFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEY 424
D P + YIHR GRTAR G ALSFV L + TA + +++ ++ +
Sbjct: 381 DLPTSSKAYIHRIGRTARAGKAGMALSFV-LPLSEFGKHKTASLASAKKDEKVLGRI--- 436
Query: 425 LMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS------------------------- 459
+ ++ F IKPYQF++++V+GF YRA DA+R+
Sbjct: 437 -VKQQSKNGFEIKPYQFDMNQVEGFRYRADDAFRAVTQTAVREARVKELKNELINSEKLK 495
Query: 460 NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPPALKK 501
+FE+NP DL +LRHDK L+ RIQS L +VP Y++P + ++
Sbjct: 496 RFFEENPQDLASLRHDKELHPARIQSQLKNVPQYLLPESARQ 537
>gi|68478403|ref|XP_716703.1| hypothetical protein CaO19.3393 [Candida albicans SC5314]
gi|68478522|ref|XP_716643.1| hypothetical protein CaO19.10896 [Candida albicans SC5314]
gi|74679968|sp|Q5A4P9.1|DBP9_CANAL RecName: Full=ATP-dependent RNA helicase DBP9
gi|46438316|gb|EAK97648.1| hypothetical protein CaO19.10896 [Candida albicans SC5314]
gi|46438381|gb|EAK97712.1| hypothetical protein CaO19.3393 [Candida albicans SC5314]
Length = 574
Score = 338 bits (868), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 201/522 (38%), Positives = 302/522 (57%), Gaps = 60/522 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNK-DVLVRARTGSGKTGAFAIPMIQKIINLKQTAQ 88
LQAI +LG+ PTLIQ AIPL L+ K D++ +A TGSGKT A+ IP++ NL
Sbjct: 26 LQAIDQLGFSNPTLIQSSAIPLALEEKRDIIAKASTGSGKTAAYCIPIVN---NLLTDDS 82
Query: 89 VQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
Q K+++L P++EL NQ+ + +++L + + +++S V LLV +P+I++
Sbjct: 83 AQGIKSIILVPTRELSNQVFQFVEKLLTFSTNKINVLNLSSSYSDQVLNSLLVNKPEIII 142
Query: 149 ATPARALAHLKA--KTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLP--KLYQAIL 204
+TPA+ + L+ K +DL S+++ + IDE DLV SFGY DD+K + +LP K Q L
Sbjct: 143 STPAKLIQILEKNEKNIDL-STVKNLTIDEVDLVLSFGYLDDLKKLESYLPVKKNLQTFL 201
Query: 205 ASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNL 264
SAT+++D+ LK P ILKL E + A + L Y+ E +K + Y + KLNL
Sbjct: 202 MSATVNDDLDDLKQRYCTKPAILKLNEDS-ANQNNLVQYYAKTTEFDKFLLAYVIFKLNL 260
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
++GKTI FVN +D+ Y+LKL+LEQF I C+LNSELP +R H V +FN+ +Y ++IA+D
Sbjct: 261 IKGKTIAFVNNIDRGYRLKLFLEQFGIRCCILNSELPINSRLHIVEEFNKNVYHLLIATD 320
Query: 325 E-KALETPQINSTNNRKRKRDK-------------------ESGVSRGIDFQFVSNVINF 364
E L Q ++ + + +DK E GVSRG+DF+ V+ V+NF
Sbjct: 321 ETNELNEEQDDNEDGDEDTKDKGNAETKPKKSKKSKFKQDKEYGVSRGVDFRNVACVLNF 380
Query: 365 DFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEY 424
D P + YIHR GRTAR G ALSFV L + TA + +++ ++ +
Sbjct: 381 DLPTSSKAYIHRIGRTARAGKAGMALSFV-LPLSEFGKHKTASLASAKKDEKVLGRI--- 436
Query: 425 LMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS------------------------- 459
+ ++ F IKPYQF++ +V+GF YRA DA+R+
Sbjct: 437 -VKQQSKNGFEIKPYQFDMKQVEGFRYRADDAFRAVTQTAVREARVKELKNELINSEKLK 495
Query: 460 NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPPALKK 501
+FE+NP DL +LRHDK L+ RIQS L +VP Y++P + ++
Sbjct: 496 RFFEENPQDLASLRHDKELHPARIQSQLKNVPQYLLPESARQ 537
>gi|405123669|gb|AFR98433.1| ATP-dependent RNA helicase DBP9 [Cryptococcus neoformans var.
grubii H99]
Length = 625
Score = 338 bits (868), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 217/581 (37%), Positives = 317/581 (54%), Gaps = 98/581 (16%)
Query: 16 YFELPFTFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIP 75
+ + PF+ + L A+A + PTL+Q +AIPL+L+ KDVL RARTGSGKT A+ +P
Sbjct: 18 FSQPPFSTLIDSRVLVALADQKFAHPTLVQAKAIPLLLEGKDVLARARTGSGKTAAYVVP 77
Query: 76 MIQKIINLKQ-----TAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQ 130
+QKI+ K +A+ Q T+A++L P+KEL Q+ I+ +T C V+CVD++
Sbjct: 78 AVQKILEAKADLSPASAEYQATRAVILVPTKELALQVTSFIKNVTKYCEGLVQCVDVAAG 137
Query: 131 VDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMK 190
S+Q LL ++PDIV++TP + L+ L++K+L L + I DEADL+ S+G++DD+
Sbjct: 138 -GASIQRVLLNDKPDIVISTPTKLLSLLQSKSLSLSQLSLLAI-DEADLLLSYGFKDDLT 195
Query: 191 AVL----KFLPKL-YQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHI 245
++ ++PKL Q L SATLS+DV +K L+LRNP IL L EPA A S LA ++
Sbjct: 196 RIMDPTSGWIPKLGVQGCLMSATLSDDVEGIKGLVLRNPAILTLSEPAAA-SSLLAQHYT 254
Query: 246 LAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKAR 305
E +K ++Y LLKL L++GK+IIFVN V++ Y++KL+LEQF + CV+NSELP +R
Sbjct: 255 HTSERDKFLLIYVLLKLKLIRGKSIIFVNDVERGYRVKLFLEQFGVKCCVVNSELPLASR 314
Query: 306 CHAVYQFNQGLYDVIIASDEKA-------------------------------------- 327
H V +FN+G+YDV++A+DE A
Sbjct: 315 YHVVEEFNRGVYDVVVATDEGAGADAEEEEDVKQEEGESEGEEDEDVDKEAKDEEEAKED 374
Query: 328 ----------LETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRA 377
T + N R R+ D S ++RGIDF S+VINFD PL Y+HR
Sbjct: 375 AKPAPGPSKRRATSPPSKPNKRARRADPTSSLARGIDFTSASSVINFDLPLTSTSYMHRV 434
Query: 378 GRTARGKNQGTALSFVSLREQDLMNDGTALSFVSL-REQDLMNDVNEYLMTNLHEDDFII 436
GRTAR G ALSFV RE+ A+S S +++ + + E E I
Sbjct: 435 GRTARAGQSGLALSFVVPREK--WGKDKAVSIKSAEKDEKVFERIKERAK---KESGSEI 489
Query: 437 KPYQFNL--DEVKGFEYRAKDAWRS-------------------------NYFEDNPTDL 469
K + + E++GF YR +DA ++ ++F NP DL
Sbjct: 490 KEWDWGGRKGEIEGFRYRMEDALKAVTGKRVAEARREEVRRELLNSEKLKSHFAANPLDL 549
Query: 470 ETLRHDKALYTVRIQSHLADVPDYIVPPALKKLARIEDDGD 510
LRHD L+ R Q+HL VP+Y++P K+A + GD
Sbjct: 550 SYLRHDTPLHPTRQQTHLKHVPNYLMP----KIAALPAGGD 586
>gi|366992942|ref|XP_003676236.1| hypothetical protein NCAS_0D02940 [Naumovozyma castellii CBS 4309]
gi|342302102|emb|CCC69875.1| hypothetical protein NCAS_0D02940 [Naumovozyma castellii CBS 4309]
Length = 611
Score = 338 bits (868), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 200/563 (35%), Positives = 312/563 (55%), Gaps = 81/563 (14%)
Query: 14 QVYFELPFTFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNK-DVLVRARTGSGKT 69
+VY + TF F + LQA+ G+ PTLIQ AIPL LQ K D++ +A TGSGKT
Sbjct: 12 EVYIDDSATFESFQLDSRLLQAVKGFGFQHPTLIQSNAIPLALQQKRDIIAKAATGSGKT 71
Query: 70 GAFAIPMIQKIINLKQTAQV------QETKALVLSPSKELCNQLHKNIQELTMKCSRDVK 123
A+ IP+IQ I++ K+T +T ++L P++EL Q+ ++++ + CS +++
Sbjct: 72 LAYLIPVIQTILDYKKTKATSMDLEENDTLGIILVPTRELAQQVSNVLEKMILYCSNEIR 131
Query: 124 CVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLK-SSLEIVIIDEADLVFS 182
+++S + SV LL +P+I+VATP + + L+ + L+ ++IDE DLV +
Sbjct: 132 QLNVSADMSNSVLTSLLASKPEILVATPGKLINILETNISSISLDELKFLVIDEVDLVLT 191
Query: 183 FGYEDDMKAVLKFLP--KLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAI-APVSQ 239
FGY+DD+ + ++LP K Q L SATL++D+ LK R+P ILK + I ++
Sbjct: 192 FGYQDDLNKISEYLPLKKNLQTFLMSATLNDDIQELKKKFCRSPAILKFNDDEINKDQTK 251
Query: 240 LAHYHILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSE 299
L Y++ E +K + Y + KL L++GKT+IFVN +D+ Y+LKL LEQF I +C+LNSE
Sbjct: 252 LIQYYVKVSEFDKFLLCYVIFKLGLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSE 311
Query: 300 LPAKARCHAVYQFNQGLYDVIIASD-------EKALETPQ-------------------- 332
LPA +R H V QFN+ +Y ++IA+D E LE
Sbjct: 312 LPANSRQHIVDQFNKNIYSLLIATDDTEYIKEEDELENESKVEDVSGEEKTEQNETLSTG 371
Query: 333 -------INSTNNRKR---KRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTAR 382
IN+ + +K+ ++DKE GVSRG+DF+ V+ V+NFD P + YIHR GRTAR
Sbjct: 372 NADDKVDINNDDKKKKQTFRKDKEYGVSRGVDFKNVACVLNFDLPTTSKSYIHRIGRTAR 431
Query: 383 GKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFN 442
GTA+SFV ++ + + S E+ L + + L ++PY F+
Sbjct: 432 AGQSGTAISFVVPLKEFGKHKPSMCSTAKRDEKILSRIIKQQSKLGLE-----MQPYSFD 486
Query: 443 LDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKA 477
+V+GF YR +D +R+ +FE+NP +L++LRHDK
Sbjct: 487 TKQVEGFRYRLEDGFRAVTQVAVREARVKELKQELLASEKLKRHFEENPKELQSLRHDKE 546
Query: 478 LYTVRIQSHLADVPDYIVPPALK 500
L+ R+Q HL VP+Y++P + +
Sbjct: 547 LHPARVQQHLKRVPEYLLPESAR 569
>gi|448099184|ref|XP_004199083.1| Piso0_002489 [Millerozyma farinosa CBS 7064]
gi|359380505|emb|CCE82746.1| Piso0_002489 [Millerozyma farinosa CBS 7064]
Length = 572
Score = 338 bits (868), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 194/540 (35%), Positives = 312/540 (57%), Gaps = 64/540 (11%)
Query: 14 QVYFELPFTFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNK-DVLVRARTGSGKT 69
+ Y T++LF + QAI +G+ PT +Q AIPL L+ K D++ +A TGSGKT
Sbjct: 8 ESYLNTDSTWSLFNLDPRLFQAIDHVGFSNPTYVQSSAIPLALEEKRDIIAKASTGSGKT 67
Query: 70 GAFAIPMIQKIINLKQTAQVQET--KALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDI 127
A+ IP++ + T + +E K+++L P++EL +Q+ K +++L + S V +++
Sbjct: 68 AAYCIPILNNLF----TTETEEKSIKSVILVPTRELSSQVTKFLEQLLLFNSDKVSVLNL 123
Query: 128 SEQVDVSVQEPLLVERPDIVVATPARALAHLK----AKTLDLKSSLEIVIIDEADLVFSF 183
S + V LL+ +PDI+++TPA+ L L+ + ++L S ++ + IDE DL+ S+
Sbjct: 124 SSNISEQVLNSLLINKPDIIISTPAKLLQFLEKNVNSNLINL-SKVQSLTIDEVDLIISY 182
Query: 184 GYEDDMKAVLKFLP--KLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLA 241
GY DD++ + +LP K Q L SAT++++V LK P ILKL++ A + L
Sbjct: 183 GYSDDLQKLGAYLPAKKNLQTYLMSATINDEVNELKSRFCTKPAILKLDDDE-ATQNNLV 241
Query: 242 HYHILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELP 301
Y+ E +K + Y + KLNL++GKTIIFVN +D+ Y+LKL+LEQF I +C+LNSELP
Sbjct: 242 QYYAKTTEFDKFLLAYVIFKLNLIKGKTIIFVNNIDRGYRLKLFLEQFGIRSCILNSELP 301
Query: 302 AKARCHAVYQFNQGLYDVIIASDEKALETPQIN----------------STNNRKRKRDK 345
+R H V +FN+ +Y ++IA+DE + +++ ST K+ +
Sbjct: 302 VNSRIHIVEEFNKNVYKLLIATDENSNNRLEMDVDSDQEQDDSQENDKKSTKGNKQNNGR 361
Query: 346 ESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGT 405
E GVSRG+DF+ V+ V+NFD P + YIHR GRTAR G ALSFV + +++ T
Sbjct: 362 EYGVSRGVDFKNVACVLNFDLPTSSKAYIHRIGRTARAGKSGMALSFV-IPLKEVGKHKT 420
Query: 406 ALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS------ 459
A + +++ ++ + + F IKPYQF++ +V+GF YRA+DA+R+
Sbjct: 421 ACLKTAKKDEKILRRI----VKQQSRSGFDIKPYQFDMKQVEGFRYRAEDAFRAVTSVSI 476
Query: 460 -------------------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPPALK 500
+FE+NP DL LRHDK L+ ++Q+HL VP+Y++P + +
Sbjct: 477 KEARYKELKEEILTSDKLKRFFEENPQDLSALRHDKELHPAKVQAHLKRVPEYLLPESAR 536
>gi|344230357|gb|EGV62242.1| ATP-dependent RNA helicase DBP9 [Candida tenuis ATCC 10573]
Length = 560
Score = 338 bits (867), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 191/507 (37%), Positives = 313/507 (61%), Gaps = 50/507 (9%)
Query: 31 QAIAKLGWLEPTLIQERAIPLIL-QNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
QAI LG+ PTL+Q AIPL L + +D++ +A TGSGKT A+ IP+IQ I+ K +
Sbjct: 32 QAIEHLGFRTPTLVQSNAIPLALDEKRDIIAKASTGSGKTAAYCIPIIQNILTGKD---I 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+E ++++L P++EL NQ+H+ I +L + C+ + +++S + V +LV +P+I+++
Sbjct: 89 KEIQSVILVPTRELANQVHQFIIKLLVYCANKINVINLSSNLSDQVINSMLVNKPEIIIS 148
Query: 150 TPARALAHLKAKTLDLK-SSLEIVIIDEADLVFSFGYEDDMKAVLKFLP--KLYQAILAS 206
TP++ + L + + +S++ + IDE DL+ S+GY+DD+ + ++LP K Q L S
Sbjct: 149 TPSKLIQVLDKASPSISLASVKNLTIDEVDLILSYGYKDDVIKLEEYLPIKKNLQVFLMS 208
Query: 207 ATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQ 266
AT+++D+ LK P ILKL + I+ ++L Y+ E +K + Y + KLNL++
Sbjct: 209 ATVNDDLNELKAKFCSKPAILKLNDENISS-NKLVQYYCRTTEFDKFLLSYVIFKLNLIK 267
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD-- 324
GKT++FVN++D+ Y+LKL+LEQF I C+LNSELP +R H V +FN+ +Y+++IA+D
Sbjct: 268 GKTLVFVNSIDRGYRLKLFLEQFGIRCCILNSELPVNSRLHIVDEFNKNIYNLLIATDDT 327
Query: 325 ----EKALETPQINSTNN--RKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAG 378
EK +E +ST+N K K+DKE GVSRG+DF+ V+ V+NFD P + Y+HR G
Sbjct: 328 NDTNEKEVE----DSTSNKKDKVKKDKEYGVSRGVDFRNVACVLNFDLPTTSRAYVHRVG 383
Query: 379 RTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKP 438
RTAR G ALSFV + +++ A + R++ ++ ++ + F +KP
Sbjct: 384 RTARAGKSGMALSFV-IPDKEFGKHKVASLKTAKRDEKIL----ARIVKQQTKSGFELKP 438
Query: 439 YQFNLDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLR 473
YQF++ +V+GF YR++DA+R+ +FE+NP DL +LR
Sbjct: 439 YQFDIKQVEGFRYRSEDAFRAVTQTAIREARVKELKQELINSDKLKRFFEENPQDLVSLR 498
Query: 474 HDKALYTVRIQSHLADVPDYIVPPALK 500
HDK L+ R+Q+ L VP+Y++P + +
Sbjct: 499 HDKELHPSRVQTQLKRVPEYLLPESAR 525
>gi|58262184|ref|XP_568502.1| hypothetical protein CNM02050 [Cryptococcus neoformans var.
neoformans JEC21]
gi|134118521|ref|XP_772034.1| hypothetical protein CNBM1920 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338818062|sp|P0CR11.1|DBP9_CRYNB RecName: Full=ATP-dependent RNA helicase DBP9
gi|338818063|sp|P0CR10.1|DBP9_CRYNJ RecName: Full=ATP-dependent RNA helicase DBP9
gi|50254640|gb|EAL17387.1| hypothetical protein CNBM1920 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57230675|gb|AAW46985.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 627
Score = 337 bits (865), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 217/582 (37%), Positives = 318/582 (54%), Gaps = 99/582 (17%)
Query: 16 YFELPFTFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIP 75
+ + PF+ + L A+A + PTL+Q +AIPL+L+ KDVL RARTGSGKT A+ +P
Sbjct: 19 FSQPPFSTLIDSRVLVALADQKFAHPTLVQAKAIPLLLEGKDVLARARTGSGKTAAYIVP 78
Query: 76 MIQKIINLKQ-----TAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQ 130
+QKI+ K +A+ Q T+A++L P+KEL Q+ + +T C V+CVD++
Sbjct: 79 AVQKILEAKADLSPASAEYQATRAIILVPTKELALQVSSFTKNVTKYCDGLVQCVDVAAG 138
Query: 131 VDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMK 190
S+Q LL ++PDIV++TP + L+ L++K+L S L + IDEADL+ S+G++DD+
Sbjct: 139 -GASIQRVLLNDKPDIVISTPTKLLSLLQSKSL-SLSQLSFLAIDEADLLLSYGFKDDLT 196
Query: 191 AVL----KFLPKL-YQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHI 245
++ ++PKL Q L SATLS+DV +K L+LRNP IL L EPA A S L+ ++
Sbjct: 197 RIMDPTSGWIPKLGVQGCLMSATLSDDVEGIKGLVLRNPAILTLSEPASA-SSLLSQHYT 255
Query: 246 LAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKAR 305
E +K ++Y LLKL L++GK+IIFVN V++ Y++KL+LEQF + CV+NSELP +R
Sbjct: 256 HTSERDKFLLIYVLLKLKLIRGKSIIFVNDVERGYRVKLFLEQFGVKCCVVNSELPLASR 315
Query: 306 CHAVYQFNQGLYDVIIASDEKA-------------------------------------- 327
H V +FN+G+YDV++A+DE A
Sbjct: 316 YHVVEEFNRGVYDVVVATDEGAGADAEEEEDVKQEESESEGEEDEDDDKEAEDKEKEAKE 375
Query: 328 -----------LETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHR 376
T + N R R+ D S ++RGIDF S+VINFD PL Y+HR
Sbjct: 376 EAKPAPGPSKRRATSPPSKPNKRARRADPTSSLARGIDFTSASSVINFDLPLTSTSYMHR 435
Query: 377 AGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSL-REQDLMNDVNEYLMTNLHEDDFI 435
GRTAR G ALSFV RE A+S S +++ + + E + E D
Sbjct: 436 VGRTARAGQSGLALSFVVPREN--WGKDKAVSIKSAEKDEKVFERIKERVK---KESDSE 490
Query: 436 IKPYQFNL--DEVKGFEYRAKDAWRS-------------------------NYFEDNPTD 468
IK + + E++GF YR +DA ++ ++F NP D
Sbjct: 491 IKEWDWKGRKGEIEGFRYRMEDALKAVTGKRVAEARREEVRRELLNSEKLKSHFAANPLD 550
Query: 469 LETLRHDKALYTVRIQSHLADVPDYIVPPALKKLARIEDDGD 510
L LRHD L+ R Q+HL VP+Y++P K+A + GD
Sbjct: 551 LSYLRHDAPLHPARQQTHLKHVPNYLMP----KIAALPTGGD 588
>gi|149236141|ref|XP_001523948.1| hypothetical protein LELG_04761 [Lodderomyces elongisporus NRRL
YB-4239]
gi|152013497|sp|A5E572.1|DBP9_LODEL RecName: Full=ATP-dependent RNA helicase DBP9
gi|146452324|gb|EDK46580.1| hypothetical protein LELG_04761 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 606
Score = 337 bits (864), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 200/548 (36%), Positives = 313/548 (57%), Gaps = 87/548 (15%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNK-DVLVRARTGSGKTGAFAIPMIQKIINLKQTAQ 88
LQAI KLG+ PTLIQ AIPL L+ K D++ +A TGSGKT A+AIP+IQ I + Q +Q
Sbjct: 32 LQAIDKLGFENPTLIQSSAIPLALEEKRDIIAKASTGSGKTAAYAIPIIQNI--MVQGSQ 89
Query: 89 VQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
+ T+++VL P++EL NQ+++ +++L + + +++S V + LL+ +P+I++
Sbjct: 90 LG-TQSVVLVPTRELSNQVYQFMEQLIKFSNNKIGILNLSSNYSDQVLKSLLINKPEIII 148
Query: 149 ATPARAL----AHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLP--KLYQA 202
+TP++ + AH +DL S+++ + IDE DL+ SFGY+DD++ + +LP K Q
Sbjct: 149 STPSKLIQTLEAHEGKDIIDL-STVKNLTIDEVDLILSFGYKDDLQKLESYLPVKKNLQT 207
Query: 203 ILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKL 262
L SAT+++D+ LK P ILKL++ + ++L ++ E +K + Y + KL
Sbjct: 208 FLMSATVNDDLNELKAKFCTKPAILKLDDDQ-SNNNKLVQFYAKTTEFDKFLLSYVIFKL 266
Query: 263 NLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIA 322
NL++GKTI+FVN +D+ Y+LKL+LEQF I C+LNSELP +R H V +FN+ +Y ++IA
Sbjct: 267 NLIKGKTIVFVNNIDRGYRLKLFLEQFGIRCCILNSELPINSRLHIVEEFNKNVYHLLIA 326
Query: 323 SDEKAL--------------------------------------------ETPQINSTNN 338
+D+ ++ E + N N
Sbjct: 327 TDDISVEKEEVDEVDEGEEEHEDAADADEKKQQNNNNNNNNHNNNNKEHKEVLKKNEKNK 386
Query: 339 R-KRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLRE 397
+ K+DKE GVSRG+DF+ V+ V+NFD P + Y+HR GRTAR G ALSFV + E
Sbjct: 387 KHSSKKDKEYGVSRGVDFRNVACVLNFDLPTTSKSYVHRVGRTARAGKSGMALSFV-IPE 445
Query: 398 QDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAW 457
+++ TA SLR V ++ ++ F IKPYQF++ +V+GF YRA DA+
Sbjct: 446 KEVGKHKTA----SLRSAKKDEKVLNRIVKQQQKNGFEIKPYQFDMKQVEGFRYRADDAF 501
Query: 458 RS-------------------------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPD 492
R+ +F++NP DL +LRHDK L+ R+Q+HL P
Sbjct: 502 RAVTQTAIREARVKELKNELINSEKLKRFFQENPRDLASLRHDKELHPARVQAHLKRTPQ 561
Query: 493 YIVPPALK 500
Y++P + +
Sbjct: 562 YLLPESAR 569
>gi|189192450|ref|XP_001932564.1| ATP-dependent RNA helicase DBP9 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187974170|gb|EDU41669.1| ATP-dependent RNA helicase DBP9 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 605
Score = 337 bits (864), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 188/500 (37%), Positives = 293/500 (58%), Gaps = 44/500 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AI L W PT IQ +AIPL L+ +D+L R+ TG+GKT A+ +P++ K + KQT+
Sbjct: 73 LRAIRDLKWASPTDIQSKAIPLALEGRDILARSGTGTGKTAAYLLPILHKTLQRKQTS-- 130
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
L+L+P++ELC Q+ + L+ C ++++ +I+ + V + L ++P++VVA
Sbjct: 131 -----LILAPTRELCLQIATVAKSLSQHCGQEIRVRNIAGKESEVVTKAALADKPEVVVA 185
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TPARA A++ + L + S L +++DE DL+ +G+ +DM+ + + +P Q I+ SATL
Sbjct: 186 TPARAWANINSSNLAI-SDLGTLVVDEGDLINGYGFSEDMENIAREMPAGVQKIVLSATL 244
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
S DV SL L+ NPV+LKL + +++ Y + EDEK ++Y + KL L++GKT
Sbjct: 245 STDVESLGSLLCTNPVVLKLAD-LDKDSNKVKQYVLKVGEDEKFLLIYAMFKLQLIKGKT 303
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK--- 326
I+FV VD+ Y++KL+LEQF I +CVLNSELP +R H V FN+ Y+++IASDE
Sbjct: 304 IVFVGDVDRSYRVKLFLEQFGIKSCVLNSELPLASRTHIVECFNRNEYNILIASDETDVV 363
Query: 327 ALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQ 386
++ + + +K +SGVSRGIDF VS V+NFDFP + Y HR GRTAR
Sbjct: 364 GVQDSETRPKKKKAKKDSNDSGVSRGIDFLNVSCVLNFDFPGTYKSYFHRIGRTARAGKS 423
Query: 387 GTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEV 446
GTA+SF+ ++Q + T + +++++ V ++ ++ ++ Y F++ +
Sbjct: 424 GTAISFIIPKDQYRKHKPTTFAGCE-HDEEVLKKVEKH-----QQEGQKLENYNFDMKRL 477
Query: 447 KGFEYRAKDAWR-------------------------SNYFEDNPTDLETLRHDKAL-YT 480
+ F YR DA R S YFE+NP L LRHD+ L +
Sbjct: 478 EPFRYRFSDALRSVTRIAIREARIKEIHMELAKSQKLSRYFEENPEALAHLRHDQTLNHP 537
Query: 481 VRIQSHLADVPDYIVPPALK 500
RIQ HL VPDY++P K
Sbjct: 538 ARIQPHLKHVPDYLLPGGKK 557
>gi|312066294|ref|XP_003136202.1| DEAD/DEAH box helicase [Loa loa]
Length = 621
Score = 337 bits (864), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 205/519 (39%), Positives = 303/519 (58%), Gaps = 68/519 (13%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ I +LGW PTLIQ R IP +NK++L RARTGSGKT AF +P+IQ+++ LK +
Sbjct: 83 LKVIGELGWERPTLIQSRMIPAAFENKNILARARTGSGKTAAFMLPIIQRVLQLKCNSSS 142
Query: 90 QETK---ALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDI 146
A+ + P+KEL Q + + LT K + ++ SE ++++ + L+++PD
Sbjct: 143 NGDAGPFAVFIVPTKELAKQTYSLLCRLTEKFPF-LMSLNFSE-LNINTDDNWLLKKPDF 200
Query: 147 VVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
VV+TP+R L L +K S++ V++DEADL+ SFGY ++M+ + FLP +Q I S
Sbjct: 201 VVSTPSRFLQAL-SKYGKPCESVKHVVLDEADLLLSFGYSEEMRLIKNFLPTHHQTIFTS 259
Query: 207 ATLSEDVLSLKHLILRNPVIL-KLEEPAIAPVSQLAHYHILAQ-EDEKATILYTLLKLNL 264
AT++E V +LK L + P+IL KL+E + QL+ YHI Q E+E+ I LLKL L
Sbjct: 260 ATMTEKVEALKELYVTGPIILMKLKEGQLPNSDQLSQYHISCQNEEERFAIFLALLKLKL 319
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIAS- 323
+ GK+IIFV D+CY+L L+L+ F I +C+LN+++P +RCH V QFN+G Y +IAS
Sbjct: 320 IIGKSIIFVRDTDRCYQLGLFLQAFNIRSCILNAQMPVNSRCHVVEQFNEGRYSYVIASD 379
Query: 324 ------DEKALETPQINSTNNRK---RKR-----DKESGVSRGIDFQFVSNVINFDFPLD 369
D +A+ + + +RK RK+ D+ESGVSRGIDF V+NVINFDFP
Sbjct: 380 INDVSCDSQAVMKDEDDGNVSRKERIRKKKQKHIDRESGVSRGIDFHHVANVINFDFPTS 439
Query: 370 IQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNL 429
+ YIHR GRTARG N+G ALSFVS +E+ + +++ +++N L
Sbjct: 440 LNSYIHRVGRTARGWNKGNALSFVSPQEKPFL-------------EEVQDEINAQLGHR- 485
Query: 430 HEDDFIIKPYQFNLDEVKGFEYRAK---------------------DAWRSN----YFED 464
I PY+ + E++ F RA+ + RS YF
Sbjct: 486 -----AITPYEVRIKELESFFLRAREVLVACTKTAIREARLAEIRAEVLRSKRLEAYFAK 540
Query: 465 NPTDLETLRHDKALYTVRIQS-HLADVPDYIVPPALKKL 502
NP + L HDK L++V + S +ADVPDY+VP +L+ +
Sbjct: 541 NPRERAALEHDKKLFSVNLHSPAIADVPDYMVPLSLRGI 579
>gi|393911673|gb|EFO27871.2| DEAD/DEAH box helicase [Loa loa]
Length = 629
Score = 337 bits (863), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 205/519 (39%), Positives = 303/519 (58%), Gaps = 68/519 (13%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ I +LGW PTLIQ R IP +NK++L RARTGSGKT AF +P+IQ+++ LK +
Sbjct: 91 LKVIGELGWERPTLIQSRMIPAAFENKNILARARTGSGKTAAFMLPIIQRVLQLKCNSSS 150
Query: 90 QETK---ALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDI 146
A+ + P+KEL Q + + LT K + ++ SE ++++ + L+++PD
Sbjct: 151 NGDAGPFAVFIVPTKELAKQTYSLLCRLTEKFPF-LMSLNFSE-LNINTDDNWLLKKPDF 208
Query: 147 VVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
VV+TP+R L L +K S++ V++DEADL+ SFGY ++M+ + FLP +Q I S
Sbjct: 209 VVSTPSRFLQAL-SKYGKPCESVKHVVLDEADLLLSFGYSEEMRLIKNFLPTHHQTIFTS 267
Query: 207 ATLSEDVLSLKHLILRNPVIL-KLEEPAIAPVSQLAHYHILAQ-EDEKATILYTLLKLNL 264
AT++E V +LK L + P+IL KL+E + QL+ YHI Q E+E+ I LLKL L
Sbjct: 268 ATMTEKVEALKELYVTGPIILMKLKEGQLPNSDQLSQYHISCQNEEERFAIFLALLKLKL 327
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIAS- 323
+ GK+IIFV D+CY+L L+L+ F I +C+LN+++P +RCH V QFN+G Y +IAS
Sbjct: 328 IIGKSIIFVRDTDRCYQLGLFLQAFNIRSCILNAQMPVNSRCHVVEQFNEGRYSYVIASD 387
Query: 324 ------DEKALETPQINSTNNRK---RKR-----DKESGVSRGIDFQFVSNVINFDFPLD 369
D +A+ + + +RK RK+ D+ESGVSRGIDF V+NVINFDFP
Sbjct: 388 INDVSCDSQAVMKDEDDGNVSRKERIRKKKQKHIDRESGVSRGIDFHHVANVINFDFPTS 447
Query: 370 IQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNL 429
+ YIHR GRTARG N+G ALSFVS +E+ + +++ +++N L
Sbjct: 448 LNSYIHRVGRTARGWNKGNALSFVSPQEKPFL-------------EEVQDEINAQLGHR- 493
Query: 430 HEDDFIIKPYQFNLDEVKGFEYRAK---------------------DAWRSN----YFED 464
I PY+ + E++ F RA+ + RS YF
Sbjct: 494 -----AITPYEVRIKELESFFLRAREVLVACTKTAIREARLAEIRAEVLRSKRLEAYFAK 548
Query: 465 NPTDLETLRHDKALYTVRIQS-HLADVPDYIVPPALKKL 502
NP + L HDK L++V + S +ADVPDY+VP +L+ +
Sbjct: 549 NPRERAALEHDKKLFSVNLHSPAIADVPDYMVPLSLRGI 587
>gi|330934123|ref|XP_003304424.1| hypothetical protein PTT_17014 [Pyrenophora teres f. teres 0-1]
gi|311318967|gb|EFQ87486.1| hypothetical protein PTT_17014 [Pyrenophora teres f. teres 0-1]
Length = 605
Score = 336 bits (862), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 188/500 (37%), Positives = 293/500 (58%), Gaps = 44/500 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AI L W PT IQ +AIPL L+ +D+L R+ TG+GKT A+ +P++ K + KQT+
Sbjct: 73 LRAIRDLKWASPTDIQSKAIPLALEGRDILARSGTGTGKTAAYLLPILHKTLQRKQTS-- 130
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
L+L+P++ELC Q+ + L+ C ++++ +I+ + V + L ++P++VVA
Sbjct: 131 -----LILAPTRELCLQIATVAKSLSQHCGQEIRVRNIAGKESEVVTKAALADKPEVVVA 185
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TPARA A++ + L + S I+++DE DL+ +G+ +DM+ + + +P Q I+ SATL
Sbjct: 186 TPARAWANINSSNLTI-SDFGILVVDEGDLINGYGFSEDMENIAREMPAGVQKIVLSATL 244
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
S DV SL L+ NPVILKL + +++ Y + ED+K ++Y + KL L++GKT
Sbjct: 245 STDVESLGSLLCTNPVILKLAD-LDKDSNKVKQYVLKVAEDDKFLLIYAMFKLQLIKGKT 303
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK--- 326
I+FV VD+ Y++KL+LEQF I +CVLNSELP +R H V FN+ Y+++IASDE
Sbjct: 304 IVFVGDVDRSYRVKLFLEQFGIKSCVLNSELPLASRTHIVECFNRNEYNILIASDETDVV 363
Query: 327 ALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQ 386
++ + + +K +SGVSRGIDF VS V+NFDFP + Y HR GRTAR
Sbjct: 364 GVQDSEARPKKKKAKKESNDSGVSRGIDFLNVSCVLNFDFPGTYKSYFHRIGRTARAGKS 423
Query: 387 GTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEV 446
GTA+SF+ ++Q + T + +++++ V ++ ++ ++ Y F++ +
Sbjct: 424 GTAISFIIPKDQYRKHKPTTFAGCE-HDEEVLEKVEKH-----QQEGQKLENYNFDMKRL 477
Query: 447 KGFEYRAKDAWR-------------------------SNYFEDNPTDLETLRHDKAL-YT 480
+ F YR DA R S YFE+NP L LRHD+ L +
Sbjct: 478 EPFRYRFGDALRSVTRIAIREARIKEIHIELAKSQKLSRYFEENPEALAHLRHDQTLNHP 537
Query: 481 VRIQSHLADVPDYIVPPALK 500
RIQ HL VPDY++P K
Sbjct: 538 ARIQPHLKYVPDYLLPGGKK 557
>gi|321265279|ref|XP_003197356.1| ATP-dependent RNA helicase [Cryptococcus gattii WM276]
gi|317463835|gb|ADV25569.1| ATP-dependent RNA helicase, putative [Cryptococcus gattii WM276]
Length = 627
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 217/582 (37%), Positives = 316/582 (54%), Gaps = 99/582 (17%)
Query: 16 YFELPFTFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIP 75
+ + PF+ + L A+A + PTL+Q +AIPL+L+ KDVL RARTGSGKT A+ +P
Sbjct: 19 FSQPPFSTLIDSRVLVALADQKFAHPTLVQAKAIPLLLEGKDVLARARTGSGKTAAYVVP 78
Query: 76 MIQKIINLKQ-----TAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQ 130
+QKI+ K +A+ Q T+A++L P+KEL Q+ I+ +T C V+CVD++
Sbjct: 79 AVQKILEAKADLSPASAEYQATRAVILVPTKELALQVSSFIKNVTKYCEGLVQCVDVAAG 138
Query: 131 VDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMK 190
S+Q LL ++PDIV++TP + L+ L++K+L L + I DEADL+ S+G++DD+
Sbjct: 139 -GSSIQRVLLNDKPDIVISTPTKLLSLLQSKSLSLSELSFLAI-DEADLLLSYGFKDDLT 196
Query: 191 AVL----KFLPKL-YQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHI 245
++ ++PKL Q L SATLS+DV +K LILRNP IL L EPA A S L ++
Sbjct: 197 RIMDPTCGWIPKLGVQGCLMSATLSDDVEGIKGLILRNPAILTLSEPAAAS-SLLTQHYT 255
Query: 246 LAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKAR 305
E +K ++Y LLKL L++GK+IIFVN V++ Y++KL+LEQF + CV+NSELP +R
Sbjct: 256 HTSERDKFLLIYVLLKLKLIRGKSIIFVNDVERGYRVKLFLEQFGVKCCVVNSELPLASR 315
Query: 306 CHAVYQFNQGLYDVIIASDE--------------------------------------KA 327
H V +FN+G+YDVI+A+DE K
Sbjct: 316 YHVVEEFNRGVYDVIVATDEGAGADAEEEEDVKQEENESEEEEGEDADEEAKDEEKETKG 375
Query: 328 LETPQINSTNNR-----------KRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHR 376
P + R R+ D S ++RGIDF S+VINFD PL Y+HR
Sbjct: 376 EAEPAAGPSKRRAASPPSKPNKRARRADPTSSLARGIDFTSASSVINFDLPLTSTSYMHR 435
Query: 377 AGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSL-REQDLMNDVNEYLMTNLHEDDFI 435
GRTAR G ALSFV RE+ A+S S +++ + + E + E
Sbjct: 436 VGRTARAGQSGLALSFVVPREK--WGKDKAVSIKSAEKDEKVFERIKERVK---KESGSE 490
Query: 436 IKPYQFNL--DEVKGFEYRAKDAWRS-------------------------NYFEDNPTD 468
IK + + E++GF YR +DA ++ ++F NP D
Sbjct: 491 IKEWDWGGRKGEIEGFRYRMEDALKAVTGKRVAEARREEVRRELLNSEKLKSHFAANPLD 550
Query: 469 LETLRHDKALYTVRIQSHLADVPDYIVPPALKKLARIEDDGD 510
L LRHD L+ R Q+HL VP+Y++P K+A + GD
Sbjct: 551 LSYLRHDAPLHPTRQQTHLKHVPNYLMP----KIAALPTGGD 588
>gi|320583899|gb|EFW98112.1| ATP-dependent RNA helicase DBP9 (DEAD-box protein 9) [Ogataea
parapolymorpha DL-1]
Length = 542
Score = 335 bits (858), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 200/515 (38%), Positives = 305/515 (59%), Gaps = 53/515 (10%)
Query: 15 VYFELPFTFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQ-NKDVLVRARTGSGKTGAFA 73
V FE +F L +QAI KLG+ PTLIQ + I L L+ KD++ RA TGSGKT A+
Sbjct: 14 VSFE---SFDLDARLIQAINKLGFEHPTLIQTQTIKLSLEERKDIIARASTGSGKTAAYC 70
Query: 74 IPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDV 133
IP++Q I L + + KALVL P+KEL Q+ + + +LT+ C R + +++++ V
Sbjct: 71 IPIVQSI--LASGSDSEGVKALVLVPTKELSKQVAEFLGQLTVFCGRSARVLNLNDNVSE 128
Query: 134 SVQEPLLVERPDIVVATPARALAHL-KAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAV 192
VQ LL E +I V+TPA+ ++ L K K++ L ++L ++IDE DL+ S+GY+DD+ +
Sbjct: 129 QVQLQLLNEGREIYVSTPAKLISVLEKNKSIQL-TNLRFLVIDEVDLMVSYGYKDDLDKL 187
Query: 193 LKFLPKLY--QAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQED 250
++L Q L SATL+E+V LK P +LKLE+ + +L Y+I E
Sbjct: 188 GEYLSTKTNTQTFLMSATLNEEVTELKTKFCNKPAVLKLED-VDSDKKKLVQYYIKTNEL 246
Query: 251 EKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVY 310
+K ++Y +LKL L++GK ++FVN +D+ YKLKL+L+ F I +C+LNSELP +R H V
Sbjct: 247 DKFLLIYVILKLGLIKGKILLFVNELDRGYKLKLFLQNFGIKSCLLNSELPVNSRLHIVE 306
Query: 311 QFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDI 370
+FN+ +Y+++IA+DE A + Q N + GVSRG+DF+ V+ V+NFD P+
Sbjct: 307 EFNKNVYNLLIATDE-ANQEGQSN-----------DFGVSRGVDFKNVACVLNFDLPVSS 354
Query: 371 QCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLH 430
+ Y+HR GRTARG G ALSFV ++ + ++L+ E+ L + +
Sbjct: 355 KTYVHRVGRTARGGKSGMALSFVVAAKEWGKHKASSLASAKKDEKVLAR-----IERSQS 409
Query: 431 EDDFIIKPYQFNLDEVKGFEYRAKDAWRS-------------------------NYFEDN 465
+ + +KPYQFN+ +V+ F YR +D++RS +FE+N
Sbjct: 410 KLGYELKPYQFNMKQVEAFRYRMEDSFRSVTRAAVRDARLREIKQELMASEKLKRHFEEN 469
Query: 466 PTDLETLRHDKALYTVRIQSHLADVPDYIVPPALK 500
P DL TLRHDK L +VR +HL VP Y++P +
Sbjct: 470 PQDLVTLRHDKDLASVRADAHLKRVPTYLLPEGAR 504
>gi|410074969|ref|XP_003955067.1| hypothetical protein KAFR_0A04960 [Kazachstania africana CBS 2517]
gi|372461649|emb|CCF55932.1| hypothetical protein KAFR_0A04960 [Kazachstania africana CBS 2517]
Length = 591
Score = 334 bits (856), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 202/544 (37%), Positives = 311/544 (57%), Gaps = 63/544 (11%)
Query: 16 YFELPFTFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNK-DVLVRARTGSGKTGA 71
Y + TF F + LQA+ G+ PTLIQ IPL LQ K DV+ +A TGSGKT +
Sbjct: 13 YIDESVTFESFQLDPRLLQAVKGSGFHHPTLIQSHGIPLALQQKRDVIAKAATGSGKTLS 72
Query: 72 FAIPMIQKIINLKQTAQ---VQETKAL--VLSPSKELCNQLHKNIQELTMKCSRDVKCVD 126
+ IP+IQ I++ K + V E+K L +L P++EL Q+ I+++ + C+++++ ++
Sbjct: 73 YLIPVIQTILDYKGSVASDGVNESKTLGIILVPTRELAQQVTNVIEKMILYCTKEIRSLN 132
Query: 127 ISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLK-SSLEIVIIDEADLVFSFGY 185
+S + +V LL+E P+IVVATPA+ ++ L+ +T + S L+ ++IDE DLV +FGY
Sbjct: 133 VSGDMSNAVLNSLLLENPEIVVATPAKLMSLLETQTNAISLSDLKFLVIDEVDLVLTFGY 192
Query: 186 EDDMKAVLKFLP--KLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAP-VSQLAH 242
++D+ + ++LP K Q L SATL++D+ LK R P ILK + I ++L
Sbjct: 193 QEDLNKIAEYLPLKKNLQTFLMSATLNDDIQELKQKFCRAPAILKFNDDEINKDKTKLIQ 252
Query: 243 YHILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPA 302
Y++ E +K + Y + KL L++GK+++FVN +D+ Y+LKL LEQF I +C+LNSELPA
Sbjct: 253 YYVKTNEFDKFLLCYVIFKLGLIKGKSLVFVNDIDRGYRLKLVLEQFGIKSCILNSELPA 312
Query: 303 KARCHAVYQFNQGLYDVIIASD-------------EKALETPQINSTNN-------RKRK 342
+R H V QFN+ +Y ++IA+D E LE TN + K
Sbjct: 313 NSRQHIVDQFNKNVYHLLIATDDTEYIKEEDEGIEENRLEDSVAEETNGGSQKKKQVQSK 372
Query: 343 RDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMN 402
+DKE GVSRG+DF+ V+ V+NFD P + Y+HR GRTAR GTA+SFV + +
Sbjct: 373 KDKEYGVSRGVDFKNVACVLNFDLPTTSKSYVHRIGRTARAGKSGTAISFVVPLKDFGKH 432
Query: 403 DGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS--- 459
+ S E+ V + L + PY F+ +++GF YR +D +R+
Sbjct: 433 KPSTCSTAKHDEKIFSRIVKQQAKLGLE-----LLPYSFDPKQIEGFRYRMEDGFRAVTQ 487
Query: 460 ----------------------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPP 497
+FE+NP +L++LRHDK L+ +RIQ HL VP+Y++P
Sbjct: 488 VAVREARIKELKEELLASEKLKRHFEENPKELQSLRHDKELHPMRIQQHLKRVPEYLLPE 547
Query: 498 ALKK 501
A +K
Sbjct: 548 AARK 551
>gi|432092632|gb|ELK25167.1| Putative ATP-dependent RNA helicase DDX56 [Myotis davidii]
Length = 445
Score = 334 bits (856), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 180/424 (42%), Positives = 257/424 (60%), Gaps = 49/424 (11%)
Query: 111 IQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLE 170
IQ+L C+RD++ ++S D + Q +L+E+PDIVV TP+R L HL+ +L L+ SLE
Sbjct: 2 IQQLAAYCARDIRVANVSAAEDSASQRAVLMEKPDIVVGTPSRLLNHLQQDSLKLRDSLE 61
Query: 171 IVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLE 230
++++DEADL+FSFG+E+++K++L LP++YQA L SAT +EDV +LK L+L NPV LKL+
Sbjct: 62 LLVMDEADLLFSFGFEEELKSLLCHLPRIYQAFLMSATFNEDVQTLKELVLHNPVTLKLQ 121
Query: 231 EPAIAPVSQLAHYHIL-AQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQF 289
E + QL + ++ E++K +LY LLKL+LV+GK+++FVNT+++ Y+L+L+LEQF
Sbjct: 122 ESQLPGPEQLQQFQVVCGAEEDKFLLLYALLKLSLVRGKSLLFVNTLERGYRLRLFLEQF 181
Query: 290 KISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNR----KRKRDK 345
I CVLN ELP ++RCH + QFNQG YD +IA+D + L P + R D
Sbjct: 182 SIPACVLNGELPLRSRCHIISQFNQGFYDCVIATDAEVLGAPVKGKRQGKGPKGNRASDL 241
Query: 346 ESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGT 405
E+GV+RGIDF V V+NFD P + Y+HRAGRTAR N G L+FV EQ +
Sbjct: 242 EAGVARGIDFHHVCAVLNFDLPPTPEAYVHRAGRTARANNPGVVLTFVLPTEQSQLG--- 298
Query: 406 ALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS------ 459
R ++L+ N + PYQF ++E++GF YR +DA RS
Sbjct: 299 -------RIEELLGGEN---------GAPALLPYQFRMEEIEGFRYRCRDAMRSVTKQAI 342
Query: 460 -------------------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPPALK 500
YFEDNP DL+ LRHD L+ ++ HL VPPAL+
Sbjct: 343 REARLKEIKEELLHSERLKTYFEDNPRDLQLLRHDLPLHPAVVKPHLGRHVSLPVPPALR 402
Query: 501 KLAR 504
L R
Sbjct: 403 GLVR 406
>gi|172087520|ref|XP_001913302.1| ATP-dependent 61 kDa nucleolar RNA helicase-like protein
[Oikopleura dioica]
gi|42601431|gb|AAS21454.1| ATP-dependent 61 kDa nucleolar RNA helicase-like protein
[Oikopleura dioica]
gi|313228721|emb|CBY17872.1| unnamed protein product [Oikopleura dioica]
Length = 548
Score = 333 bits (855), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 199/547 (36%), Positives = 300/547 (54%), Gaps = 82/547 (14%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L IA LGW EPT IQE +P+ L+ KD+L +ARTGSGKTGA+ IP++Q+I++ +
Sbjct: 23 LSGIAALGWKEPTEIQEAGLPIALKGKDILAKARTGSGKTGAYLIPIVQRILH------I 76
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T+AL++ P++ELC+Q+ ++EL +KC V ++ +V+ IV+
Sbjct: 77 ASTRALIIGPTRELCSQIEAVVRELCVKCLDVVSIYELGSEVETEADIS-----ASIVIG 131
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L LK++ L L + L ++++DEADL+F FG + + ++ LP Q+ L SATL
Sbjct: 132 TPGRILNALKSERLSL-TELSVMVLDEADLLFGFGNDKMVTEIVSHLPGTQQSFLMSATL 190
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQED-EKATILYTLLKLNLVQGK 268
SE V +K L LRNPV LKL++ ++ L Y I ED EK ++ + LKL +V+GK
Sbjct: 191 SEQVEKIKKLTLRNPVTLKLDDSSLPNAETLQQYQINLNEDFEKYLVILSFLKLRIVRGK 250
Query: 269 TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL 328
+++F ++CYKLKL+L+QF I + VL+SEL A +R +AV QFN+G +DV+IA+D+ L
Sbjct: 251 SLVFACGTNRCYKLKLFLKQFGIPSVVLSSELAAASRHNAVQQFNKGKFDVMIANDQVDL 310
Query: 329 E---------------TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCY 373
+ + + + +E GVSRGIDFQ VSNVINFDFP + Y
Sbjct: 311 DEEIEEGEHTKAKKEEKDSKKKKSKTQEEDHREFGVSRGIDFQNVSNVINFDFPTSAKQY 370
Query: 374 IHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDD 433
IHRAGRTARG N+G ++ + + E+D ++ V E +T + D
Sbjct: 371 IHRAGRTARGDNKGRVINLM----------------IGQEERDCLDKVTE--VTGISVDR 412
Query: 434 FIIKPYQFNLDEVKGFEYRAKDAW--------------------------RSNYFEDNPT 467
F +F +++V+G RA DA + YF +
Sbjct: 413 F-----KFKMEQVEGLRGRASDALDKCSKRAIRDGRVAEIKQAILNSKKLQEEYFTRHEN 467
Query: 468 DLETLRHDKALYTVRIQSHLADVPDYIVPPALKKLARIEDDGDEDVRAEPITDEEYNKQY 527
DL LRHD L V +S LA++P Y++P +K I E+ R +P T + K
Sbjct: 468 DLMALRHDANLKKVSKRSDLANIPTYLLPAQIKNSLNI-----ENARLKPQTKNYHKKGL 522
Query: 528 EEYKKRS 534
+K++
Sbjct: 523 STKEKQA 529
>gi|354543099|emb|CCE39817.1| hypothetical protein CPAR2_602350 [Candida parapsilosis]
Length = 573
Score = 333 bits (855), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 191/520 (36%), Positives = 305/520 (58%), Gaps = 61/520 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNK-DVLVRARTGSGKTGAFAIPMIQKII--NLKQT 86
LQAI KLG+ PTLIQ AIPL L+ K D++ +A TGSGKT A+A+P+IQ ++ NL
Sbjct: 28 LQAIDKLGFENPTLIQSSAIPLALEEKRDIIAKASTGSGKTAAYALPIIQNLLLDNLGPG 87
Query: 87 AQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDI 146
K++VL P++EL NQ+ + +++L ++ + +++S V LL +P+I
Sbjct: 88 -----IKSVVLVPTRELSNQVFQFMEQLIKHSNKKIGILNLSSSYSDQVLNSLLANKPEI 142
Query: 147 VVATPARALAHL-----KAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLP--KL 199
+++TP + + L K +DL SS+ + IDE DL+ SFGY +D+ + +LP K
Sbjct: 143 IISTPNKLIQVLEMNDEKKSPIDL-SSVRNLTIDEVDLILSFGYLEDLAKLESYLPVKKN 201
Query: 200 YQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTL 259
Q L SAT+++D+ LK P ILKL++ + +L ++ E +K + Y +
Sbjct: 202 LQTFLMSATINDDINELKTKFCTRPAILKLDDEQ-SNNDKLVQFYAKTTEFDKFLLSYVI 260
Query: 260 LKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDV 319
KLNL++GKTI+FVN +D+ Y+LKL+LEQF I C+LNSELP +R H V +FN+ +Y +
Sbjct: 261 FKLNLIKGKTIVFVNNIDRGYRLKLFLEQFGIRCCILNSELPINSRLHIVEEFNKNVYHL 320
Query: 320 IIASDEKALETPQINSTNNRKRKRDK--------------ESGVSRGIDFQFVSNVINFD 365
+IA+DE ++E + + N + K E GVSRG+DF+ V+ V+NFD
Sbjct: 321 LIATDEISVEKDEGENDNEDGKSSQKVVDNPKAKKSKKDKEYGVSRGVDFKNVACVLNFD 380
Query: 366 FPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYL 425
P + Y+HR GRTAR G ALSFV + +++ TA + R++ +++ +
Sbjct: 381 LPTTSKAYVHRIGRTARAGKSGMALSFV-VASKEVGKHKTATLSTAKRDEKILSRI---- 435
Query: 426 MTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS-------------------------N 460
+ ++ F IKPYQF++ +V+GF YRA DA+R+
Sbjct: 436 VKQQEKNGFEIKPYQFDMKQVEGFRYRADDAFRAVTQTAIREARVKELKNELINSEKLKR 495
Query: 461 YFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPPALK 500
+F++NP +L +LRHDK L+ R+Q+HL ++P+Y++P + +
Sbjct: 496 FFQENPQNLASLRHDKELHPARVQAHLKNLPEYLLPESAR 535
>gi|126136425|ref|XP_001384736.1| ATP-dependent RNA helicase DBP9 (DEAD-box protein 9)
[Scheffersomyces stipitis CBS 6054]
gi|146286107|sp|A3LV40.1|DBP9_PICST RecName: Full=ATP-dependent RNA helicase DBP9
gi|126091958|gb|ABN66707.1| ATP-dependent RNA helicase DBP9 (DEAD-box protein 9)
[Scheffersomyces stipitis CBS 6054]
Length = 581
Score = 333 bits (854), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 199/535 (37%), Positives = 316/535 (59%), Gaps = 65/535 (12%)
Query: 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNK-DVLVRARTGSGKTGAFAIPMIQKI 80
+F L +QAI +LG+ PTLIQ AIPL L+ K D++ +A TGSGKTGA+ IP+I
Sbjct: 19 SFHLDARLVQAIDQLGFEHPTLIQASAIPLALEEKRDIIAKASTGSGKTGAYVIPIIH-- 76
Query: 81 INLKQTAQVQ----ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQ 136
NL A+V+ K+++L P++EL NQ+ + +++L + + + +++S + V
Sbjct: 77 -NLLTDAEVESGNHHIKSIILVPTRELSNQVLQFVEKLLVYSNNRINAINLSANLSDQVV 135
Query: 137 EPLLVERPDIVVATPARALAHLKAKT----LDLKSSLEIVIIDEADLVFSFGYEDDMKAV 192
LL+ +P+I+++TPA+ + L+ +DL S++ + IDE DLV S+GY +D++ +
Sbjct: 136 NSLLMNKPEIIISTPAKLIQVLEKNANKDLIDL-STVRNLTIDEVDLVLSYGYLEDLQKL 194
Query: 193 LKFLP--KLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQED 250
+LP K Q L SAT+++D+ LK P ILKL + A ++L Y+ E
Sbjct: 195 ETYLPIKKNLQTFLMSATVNDDLNDLKTRFCSRPAILKLNDEESAQ-NKLIQYYARTTEF 253
Query: 251 EKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVY 310
+K + Y + KLNL++GKT++FVN +D+ Y+LKL+LEQF I C+LNSELP +R H V
Sbjct: 254 DKFLLAYVIFKLNLIKGKTLVFVNNIDRGYRLKLFLEQFGIRCCILNSELPINSRLHIVE 313
Query: 311 QFNQGLYDVIIASDE-------------------KALETPQINSTNNRKRKRDKESGVSR 351
++N+ +Y+++IA+DE KA S ++K+K+D E GVSR
Sbjct: 314 EYNKNVYNLLIATDETNDFTVEKDEQQQEESQDKKASSAKTKQSKKSKKQKKDTEYGVSR 373
Query: 352 GIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVS 411
G+DF+ V+ V+NFD P + YIHR GRTAR G ALSFV L +++ TA +
Sbjct: 374 GVDFRNVACVLNFDLPTTSKAYIHRIGRTARAGKAGMALSFV-LPIKEVGKHKTASLSTA 432
Query: 412 LREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS------------ 459
+++ ++ + + ++ F IKPYQF++ +V+GF YR++DA+R+
Sbjct: 433 KKDEKILRRI----VKQQSKNGFEIKPYQFDMKQVEGFRYRSEDAFRAVTQTAIREARIK 488
Query: 460 -------------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPPALKK 501
+FE+NP DL +LRHDK L+ R+QSHL VPDY++P + ++
Sbjct: 489 ELKNELINSDKLKRFFEENPQDLASLRHDKELHPTRVQSHLKRVPDYLLPESARQ 543
>gi|451853432|gb|EMD66726.1| hypothetical protein COCSADRAFT_138680 [Cochliobolus sativus
ND90Pr]
Length = 611
Score = 333 bits (853), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 190/523 (36%), Positives = 302/523 (57%), Gaps = 50/523 (9%)
Query: 9 EPTLIQVYFELPFTFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGK 68
EPT + EL L L+AI L W PT +Q +AIPL L+ +D+L R+ TG+GK
Sbjct: 60 EPTPFASFAELQLEPRL----LRAIRDLKWASPTAVQSQAIPLALEGRDILARSGTGTGK 115
Query: 69 TGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDIS 128
T A+ +P++ K + KQT+ L+L+P++ELC Q+ + L CS++++ +I+
Sbjct: 116 TAAYLLPILHKTLQRKQTS-------LILAPTRELCQQIANVAKSLAQHCSQEIRVRNIA 168
Query: 129 EQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDD 188
+ +V + L ++P++VVATPARA ++ TL + + L +++DE DL+ +G+ +D
Sbjct: 169 GKESDAVVKAALADKPEVVVATPARAWTNINNSTLAV-NDLGTLVVDEGDLMNGYGFAED 227
Query: 189 MKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQ 248
M + + +P Q I+ SATLS DV +L L+ +PVILKL + ++ Y +
Sbjct: 228 MTNIAREIPVGVQKIVLSATLSTDVEALGSLLCIDPVILKLAD-LDKDSKRVKQYVLKVA 286
Query: 249 EDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHA 308
EDEK ++Y + KL L++GKTI+FV VD+ Y++KL+LEQF I + VLNSELP +R H
Sbjct: 287 EDEKFLLIYAMFKLQLIKGKTIVFVGDVDRSYRVKLFLEQFGIKSAVLNSELPLASRTHI 346
Query: 309 VYQFNQGLYDVIIASDEKAL-----ETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVIN 363
V +FN+ +Y+++IASDE + E + ++ K+SGVSRGIDF V+ V+N
Sbjct: 347 VEEFNKNVYNILIASDENDVVGVQDEDSKPKKKKAKRNNDSKDSGVSRGIDFLNVACVLN 406
Query: 364 FDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNE 423
FDFP + + Y HR GRTAR GTA+SF+ +E+ + T+ + +++++ V +
Sbjct: 407 FDFPGNYKSYFHRIGRTARAGKSGTAISFIIPKEKYRKHKPTSFAGCE-NDEEVLKKVEK 465
Query: 424 YLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWR------------------------- 458
+ ++ ++ Y F++ ++ F YR DA +
Sbjct: 466 H-----QQEGQKLENYNFDMKRLEPFRYRFADALKSVTRIAIREARIKEIHSELAKSQKL 520
Query: 459 SNYFEDNPTDLETLRHDKAL-YTVRIQSHLADVPDYIVPPALK 500
S YFE+NP L LRHD+ L + +RIQ HL VPDY++P K
Sbjct: 521 SRYFEENPEALAHLRHDQTLNHPLRIQPHLKHVPDYLLPGGKK 563
>gi|405958064|gb|EKC24228.1| Putative ATP-dependent RNA helicase DDX56 [Crassostrea gigas]
Length = 521
Score = 332 bits (852), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 179/358 (50%), Positives = 228/358 (63%), Gaps = 65/358 (18%)
Query: 1 AIAKLGWLEPTLIQVYFELPFTF----------------TLFCIP--------------- 29
AI++LGW EPT IQ +P FCIP
Sbjct: 20 AISQLGWSEPTPIQEK-AIPLALDGKDILARARTGSGKTAAFCIPVIQKILTAKQTSSTE 78
Query: 30 ---------------------LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGK 68
L AI++LGW EPT IQE+AIPL L KD+L RARTGSGK
Sbjct: 79 QCVKALVLTPTKELCHQAYRNLMAISQLGWSEPTPIQEKAIPLALDGKDILARARTGSGK 138
Query: 69 TGAFAIPMIQKIINLKQTAQVQE-TKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDI 127
T AF IP+IQKI+ KQT+ ++ KALVL+P+KELC+Q +KN+ D
Sbjct: 139 TAAFCIPVIQKILTAKQTSSTEQCVKALVLTPTKELCHQAYKNLM-----------VYDS 187
Query: 128 SEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYED 187
+ +V V + P+L+E+PDI+VATP RALAH+KA LDL+ SLE++IIDEADL+FSFGYED
Sbjct: 188 TYRVHVHILRPMLMEKPDIIVATPTRALAHIKAGNLDLRQSLELLIIDEADLLFSFGYED 247
Query: 188 DMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILA 247
D++ +L LPK+YQA L SATLSEDV +LK ++L N VILKLEE + SQL YHI
Sbjct: 248 DVRGILSNLPKIYQAFLMSATLSEDVRALKRMVLHNAVILKLEESQLPEASQLTQYHIKC 307
Query: 248 QEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKAR 305
+E +K T++Y L+KLNL++GK+IIFVN V++CYKLKL+LEQF I CVLNSELP +R
Sbjct: 308 EEQDKFTLVYALMKLNLLRGKSIIFVNEVNRCYKLKLFLEQFAIPACVLNSELPVNSR 365
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 90/178 (50%), Gaps = 35/178 (19%)
Query: 355 FQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLRE 414
F + V+N + P++ RTARG NQG+ALSF VS+++
Sbjct: 349 FAIPACVLNSELPVN--------SRTARGDNQGSALSF-----------------VSVKD 383
Query: 415 QDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRSNYFEDNPTDLETLRH 474
DL+ + ++T + L E+K E A + ++ YFEDNP DL+ LRH
Sbjct: 384 MDLLGEDAMRMVTK-------TAIREARLKEIKQ-EMLASNKLKT-YFEDNPRDLQVLRH 434
Query: 475 DKALYTVRIQSHLADVPDYIVPPALKKLARIEDD-GDEDVRAEPITDEEYNKQYEEYK 531
DK+L+TV++Q HL +VPDY+VP L+ + + D G R + + + K +YK
Sbjct: 435 DKSLHTVKVQKHLKNVPDYLVPQTLRHMRGMSDKPGKSKARRKNMAPKGPTKAEIKYK 492
>gi|452004861|gb|EMD97317.1| hypothetical protein COCHEDRAFT_1209171 [Cochliobolus
heterostrophus C5]
Length = 611
Score = 332 bits (852), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 184/502 (36%), Positives = 294/502 (58%), Gaps = 46/502 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AI L W PT +Q +AIPL L+ +D+L R+ TG+GKT A+ +P++ K + KQT+
Sbjct: 77 LRAIRDLKWASPTAVQSQAIPLALEGRDILARSGTGTGKTAAYLLPILHKTLQRKQTS-- 134
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
L+L+P++ELC Q+ + L C ++++ +I+ + +V + L ++P++VVA
Sbjct: 135 -----LILAPTRELCQQIANVAKSLAQHCGQEIRVRNIAGKESDAVVKAALADKPEVVVA 189
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TPARA ++ TL + + L +++DE DL+ +G+ +DM + + +P Q I+ SATL
Sbjct: 190 TPARAWTNINNSTLAV-NDLGTLVVDEGDLINGYGFAEDMTNIAREIPVGVQKIVLSATL 248
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
S DV +L L+ +PVILKL + ++ Y + EDEK ++Y + KL L++GKT
Sbjct: 249 STDVEALGSLLCTDPVILKLAD-LDKDSKRVKQYVLKVAEDEKFLLIYAMFKLQLIKGKT 307
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL- 328
I+FV VD+ Y++KL+LEQF I + VLNSELP +R H V +FN+ +Y+++IASDE +
Sbjct: 308 IVFVGDVDRSYRVKLFLEQFGIKSAVLNSELPLASRTHIVEEFNKNVYNILIASDENDVV 367
Query: 329 ----ETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384
E + ++ K+SGVSRGIDF V+ V+NFDFP + + Y HR GRTAR
Sbjct: 368 GVQDEDSKPKKKKAKRNNDSKDSGVSRGIDFLNVACVLNFDFPGNYKSYFHRIGRTARAG 427
Query: 385 NQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLD 444
GTA+SF+ +E+ + T+ + +++++ V ++ E+ ++ Y F++
Sbjct: 428 KSGTAISFIIPKEKYRKHKPTSFAGCE-NDEEVLKKVEKH-----QEEGQKLENYNFDMK 481
Query: 445 EVKGFEYRAKDAWR-------------------------SNYFEDNPTDLETLRHDKAL- 478
++ F YR DA + S YFE+NP L LRHD+ L
Sbjct: 482 RLEPFRYRFADALKSVTRIAIREARIKEIHSELAKSQKLSRYFEENPEALAHLRHDQTLN 541
Query: 479 YTVRIQSHLADVPDYIVPPALK 500
+ +RIQ HL VPDY++P K
Sbjct: 542 HPLRIQPHLKHVPDYLLPGGKK 563
>gi|223590194|sp|A5DC85.2|DBP9_PICGU RecName: Full=ATP-dependent RNA helicase DBP9
gi|190344991|gb|EDK36792.2| hypothetical protein PGUG_00890 [Meyerozyma guilliermondii ATCC
6260]
Length = 586
Score = 332 bits (851), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 196/516 (37%), Positives = 309/516 (59%), Gaps = 57/516 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNK-DVLVRARTGSGKTGAFAIPMIQKIINLKQTAQ 88
LQA+ +LG+ +PTLIQ AIPL L++K D++ +A TGSGKTGA++IP+IQ I L +
Sbjct: 47 LQAVYQLGFEKPTLIQSNAIPLSLEDKRDIIAKASTGSGKTGAYSIPIIQNI--LSEGLS 104
Query: 89 VQETKALVLSPSKELCNQLHKNIQELTMKCSRDVK---CVDISEQVDVSVQEPLLVERPD 145
K+++L P+KEL NQ+ K I++L + C+ + ++S+QV VS LL +P+
Sbjct: 105 EHNIKSVILVPTKELANQVTKFIEKLLVYCNSITQINLATNVSDQVVVS----LLSAKPE 160
Query: 146 IVVATPARALAHLK--AKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLP--KLYQ 201
I+++TP+R L+ A +DL +++ + IDE DL+ S+GY +D++ + FLP + Q
Sbjct: 161 IIISTPSRLTTVLEKHASIVDL-TTVTSLAIDEVDLMLSYGYMEDLQKLDDFLPIKRNLQ 219
Query: 202 AILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLK 261
L SAT+++DV LK P I+KL + ++L ++ E +K Y + K
Sbjct: 220 TYLMSATVNDDVNDLKARFCTKPAIIKLNDNE-ENQNRLVQFYARTSEFDKFLFAYVIFK 278
Query: 262 LNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVII 321
L+L++GKT+ FVN +D+ Y+LKL+LEQF + C+LNSELP +R H V +FN+ +Y+++I
Sbjct: 279 LHLIKGKTLAFVNNIDRGYRLKLFLEQFGVRCCILNSELPVNSRLHIVDEFNKNVYNLLI 338
Query: 322 ASDEKALETPQINSTNNRKRKR-----------DKESGVSRGIDFQFVSNVINFDFPLDI 370
ASDE T Q + K D E GVSRG+DF+ V+ V+NFD P
Sbjct: 339 ASDESTEVTEQEGEDDQEDSKPEKSKKKKGKKVDGEYGVSRGVDFRNVACVLNFDLPTTS 398
Query: 371 QCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLH 430
+ Y+HR GRTAR G ALSFV + +++ TA + + R++ ++ + + +
Sbjct: 399 RSYVHRVGRTARAGKAGMALSFV-VPVKEVGKHKTATNPGAKRDEKVLARI----VKSQS 453
Query: 431 EDDFIIKPYQFNLDEVKGFEYRAKDAWRS-------------------------NYFEDN 465
++ F IKPYQF++ +V+GF YRA+DA+R+ +FE+N
Sbjct: 454 KNGFEIKPYQFDMTQVEGFRYRAEDAFRAVTSAAIREARIRELKNEIMNSEKLKRFFEEN 513
Query: 466 PTDLETLRHDKALYTVRIQSHLADVPDYIVPPALKK 501
P DL +LRHDK L+ ++QS L VPDY++P + ++
Sbjct: 514 PQDLASLRHDKELHPAKVQSQLKRVPDYLLPESARQ 549
>gi|19076031|ref|NP_588531.1| ATP-dependent RNA helicase Dbp9 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|74676034|sp|O60080.1|DBP9_SCHPO RecName: Full=ATP-dependent RNA helicase dbp9
gi|3184061|emb|CAA19304.1| ATP-dependent RNA helicase Dbp9 (predicted) [Schizosaccharomyces
pombe]
Length = 595
Score = 331 bits (849), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 190/542 (35%), Positives = 310/542 (57%), Gaps = 85/542 (15%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ 90
+AI K + +PT +Q IPL L+ KD++ +ARTGSGKT A+ IP+++ ++ KQ + Q
Sbjct: 27 RAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQ 86
Query: 91 ETK-ALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
AL+L P++EL Q++ +++LT CS+ ++ ++++ +VQ PLL++ PDIV+A
Sbjct: 87 RGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQRPLLLDLPDIVIA 146
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP+R + H+ + L L L+ ++IDEADL+ SFGY +DMK + + LP+ Q+ L SATL
Sbjct: 147 TPSRCVVHVASGVLPL-DKLKFLVIDEADLMLSFGYNEDMKTLSRSLPRGTQSFLMSATL 205
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
S+++ SL+ L+ RNP IL +++ + +L Y + E +K + Y LLKL L++GK
Sbjct: 206 SKNIASLQKLVCRNPFILAVKDKEAS--GKLTQYVVKCSEQDKFLLAYILLKLRLIKGKI 263
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL- 328
+IFVN +++CY+LKL+LEQF + + VLNSELP +R H + Q+N+GLY +IIA+DE +
Sbjct: 264 LIFVNEINRCYRLKLFLEQFGLKSLVLNSELPVNSRLHILEQYNKGLYQIIIATDESGMM 323
Query: 329 --------------------ETPQINSTNNRKR----------------------KRDKE 346
+ P ++ +++ K+DKE
Sbjct: 324 GEIEELENNVDFVEEEVISTDQPTLDKMKDQENADVNDESILAAAKDKSKKKKRVKQDKE 383
Query: 347 SGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTA 406
GV+RG+DF+ V+ V+NFD P + + YIHR GRTAR GTA+SFV + + + T+
Sbjct: 384 YGVARGLDFENVACVLNFDMPSNTKSYIHRIGRTARAGKPGTAMSFVVPKSEVGKHKPTS 443
Query: 407 LSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS------- 459
L +E ++ L + ++PY F+ +++ F YR +DA R+
Sbjct: 444 LESCK---------KDESVLRRLEKKQISLQPYSFDKNQIDAFRYRMEDALRAVTTVAVS 494
Query: 460 ------------------NYFEDNPTDLETLRHDKALYTVRI---QSHLADVPDYIVPPA 498
+YF +NP +L +L HD + +VR+ Q HL VP+Y++P
Sbjct: 495 AARAAELKQELLISEKLKSYFAENPDELLSLTHD-TVSSVRLGHTQRHLRHVPEYLLPKG 553
Query: 499 LK 500
++
Sbjct: 554 MQ 555
>gi|260944756|ref|XP_002616676.1| hypothetical protein CLUG_03917 [Clavispora lusitaniae ATCC 42720]
gi|238850325|gb|EEQ39789.1| hypothetical protein CLUG_03917 [Clavispora lusitaniae ATCC 42720]
Length = 598
Score = 331 bits (849), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 193/544 (35%), Positives = 306/544 (56%), Gaps = 81/544 (14%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNK-DVLVRARTGSGKTGAFAIPMIQKIINLKQTAQ 88
LQAI LG+ PTLIQ AIPL L+ K D++ ++ TGSGKT A+ IP++Q II+ + + +
Sbjct: 26 LQAIDHLGFKYPTLIQSSAIPLALEEKRDIIAKSSTGSGKTAAYCIPILQNIISTENSNE 85
Query: 89 VQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
+ K+++L P++EL +Q+ + ++ L + C+ V++S V V + LLV +PDI+V
Sbjct: 86 -KSVKSIILVPTRELSSQVCQFLESLLVYCNHKFSAVNLSSNVSEQVLKSLLVNKPDIIV 144
Query: 149 ATPARAL----AHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLP--KLYQA 202
+TPA+ + ++ +DL S + ++IDE DLV S+GY +D++ + +LP Q
Sbjct: 145 STPAKLIEVLEQNVNTNMIDL-SKVRSLVIDEVDLVLSYGYMEDLQQLESYLPVKTNLQT 203
Query: 203 ILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKL 262
L SAT+++D+ LK P +L+L E + + L Y+ E +K + Y + KL
Sbjct: 204 FLMSATINDDLEELKTRFCSRPAVLRLNEQNLTK-ANLVQYYARTTEFDKFLLSYVIFKL 262
Query: 263 NLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIA 322
NL++GKT+IFVNT+D+ Y+LKL+LEQF I C+LNSELP +R H V +FN+G+Y+++IA
Sbjct: 263 NLIKGKTLIFVNTIDRGYRLKLFLEQFGIRCCILNSELPVNSRLHIVDEFNKGVYNLLIA 322
Query: 323 SDE------------------KALETPQINSTNNRKRKRDK------------------- 345
+DE K E Q +++ + +
Sbjct: 323 TDETNDFTKEEDEDEEEGTTKKVAENEQQGNSDEKTENNENVTEESEASHKKSKKNKNKA 382
Query: 346 ----ESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLM 401
E GVSRG+DF+ V+ V+NFD P + YIHR GRTAR G ALSFV + ++++
Sbjct: 383 KKDKEYGVSRGVDFRNVACVLNFDLPTTSRAYIHRVGRTARAGKAGMALSFV-IPKKEVG 441
Query: 402 NDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS-- 459
A ++ ++ + + N F +KPYQF++ +V+GF YRA+DA+R+
Sbjct: 442 RHRVAGLGGPQKDDKILKRIEKQQSKN----GFELKPYQFDMKQVEGFRYRAEDAFRAIT 497
Query: 460 -----------------------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVP 496
+FE+NP DL +LRHDK L+ R+QS L VP+Y++P
Sbjct: 498 LVAIREARVMELKNELLNSDKLKRFFEENPQDLASLRHDKELHPSRVQSQLKRVPEYLLP 557
Query: 497 PALK 500
+ +
Sbjct: 558 ASAR 561
>gi|146423163|ref|XP_001487513.1| hypothetical protein PGUG_00890 [Meyerozyma guilliermondii ATCC
6260]
Length = 586
Score = 331 bits (848), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 197/516 (38%), Positives = 307/516 (59%), Gaps = 57/516 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNK-DVLVRARTGSGKTGAFAIPMIQKIINLKQTAQ 88
LQA+ +LG+ +PTLIQ AIPL L++K D++ +A TGSGKTGA++IP+IQ I L +
Sbjct: 47 LQAVYQLGFEKPTLIQSNAIPLSLEDKRDIIAKASTGSGKTGAYSIPIIQNI--LSEGLS 104
Query: 89 VQETKALVLSPSKELCNQLHKNIQELTMKCSRDVK---CVDISEQVDVSVQEPLLVERPD 145
K+++L P+KEL NQ+ K I++L + C+ + ++S+QV VS LL+ +P+
Sbjct: 105 EHNIKSVILVPTKELANQVTKFIEKLLVYCNSITQINLATNVSDQVVVS----LLLAKPE 160
Query: 146 IVVATPARALAHLK--AKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLP--KLYQ 201
I+++TP R L+ A +DL +++ + IDE DL+ S+GY +D++ + FLP + Q
Sbjct: 161 IIISTPLRLTTVLEKHASIVDL-TTVTSLAIDEVDLMLSYGYMEDLQKLDDFLPIKRNLQ 219
Query: 202 AILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLK 261
L SAT+++DV LK P I+KL + ++L ++ E +K Y + K
Sbjct: 220 TYLMSATVNDDVNDLKARFCTKPAIIKLNDNE-ENQNRLVQFYARTSEFDKFLFAYVIFK 278
Query: 262 LNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVII 321
L+L++GKT+ FVN +D+ Y+LKL+LEQF + C+LNSELP +R H V +FN+ +Y+++I
Sbjct: 279 LHLIKGKTLAFVNNIDRGYRLKLFLEQFGVRCCILNSELPVNSRLHIVDEFNKNVYNLLI 338
Query: 322 ASDEKALETPQINSTNNRKRKR-----------DKESGVSRGIDFQFVSNVINFDFPLDI 370
ASDE T Q + K D E GVSRG+DF+ V+ V+NFD P
Sbjct: 339 ASDESTEVTEQEGEDDQEDSKPEKSKKKKGKKVDGEYGVSRGVDFRNVACVLNFDLPTTS 398
Query: 371 QCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLH 430
+ Y+HR GRTAR G ALSFV + +++ TA + + R++ ++ + + N
Sbjct: 399 RSYVHRVGRTARAGKAGMALSFV-VPVKEVGKHKTATNPGAKRDEKVLARIVKLQSKN-- 455
Query: 431 EDDFIIKPYQFNLDEVKGFEYRAKDAWRS-------------------------NYFEDN 465
F IKPYQF++ +V+GF YRA+DA+R+ +FE+N
Sbjct: 456 --GFEIKPYQFDMTQVEGFRYRAEDAFRAVTLAAIREARIRELKNEIMNSEKLKRFFEEN 513
Query: 466 PTDLETLRHDKALYTVRIQSHLADVPDYIVPPALKK 501
P DL +LRHDK L+ ++QS L VPDY++P + ++
Sbjct: 514 PQDLASLRHDKELHPAKVQSQLKRVPDYLLPESARQ 549
>gi|219112795|ref|XP_002178149.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217411034|gb|EEC50963.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 512
Score = 330 bits (847), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 197/511 (38%), Positives = 303/511 (59%), Gaps = 68/511 (13%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQN-KDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
+A+++LG + PTL+Q + +PL L + +D+LVRARTGSGKT A+++P++QKI+ ++
Sbjct: 25 KAVSRLGHVRPTLVQSKCLPLALSSGRDLLVRARTGSGKTLAYSLPLLQKILQRSKSG-- 82
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISE--------QVDVSVQEPLLV 141
A+VL P++ELC Q+H+ +Q L+ C+ + +S Q +++ QE +L
Sbjct: 83 --VGAVVLIPTRELCTQVHQVLQGLSYYCNDIISIAILSAGRGRGEKAQEELTRQEAMLR 140
Query: 142 ERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQ 201
++P+++VATPA L +++ LDLKSS+E +++DEADLV SFGY D+ ++K LP++ Q
Sbjct: 141 DQPNVLVATPAGLLTQIRSGLLDLKSSVETLVVDEADLVLSFGYAKDIAEIVKSLPRICQ 200
Query: 202 AILASATLSEDVLSLKHLILRNPVILKLE--EPAIAPVSQLAHYHILAQEDEKATILYTL 259
L SATLS ++ SLK ++L +PV+LKLE E V L +++ + +K ++Y
Sbjct: 201 GFLMSATLSPELDSLKKIVLNSPVVLKLEQDEKTSTGVGHLKQFYVALPKRDKNLVVYVF 260
Query: 260 LKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDV 319
LKL L++GK + FVN+ D Y+LKL+LEQF I + VLN+ELP ++R + + QFN G +D
Sbjct: 261 LKLGLLKGKGLFFVNSTDAGYRLKLFLEQFSIRSAVLNAELPFRSRLNIIEQFNVGNFDY 320
Query: 320 IIASD--------EKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQ 371
+IA+D E + + + N + RK D + GVSRG+DF+ VS V+N DFPL+ +
Sbjct: 321 LIATDASTDAEQKEDSDDEHEANVKKLKTRKADSQYGVSRGLDFRNVSFVVNVDFPLNSR 380
Query: 372 CYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHE 431
Y HR GRTARG +G ALSFV L S ++ D + V +
Sbjct: 381 SYSHRVGRTARGGAKGVALSFVELE--------------SKQQHDTLLAVQDD-----QP 421
Query: 432 DDFIIKPYQFNLDEVKGFEYRAKDAWRS-------------------------NYFEDNP 466
+ P F+L E++GF YR +D R+ +FEDNP
Sbjct: 422 STPLPVPLDFDLHEIEGFRYRCEDVQRAVTRMAVRETRAAELKAEILNSERLQAHFEDNP 481
Query: 467 TDLETLRHDK-ALYTVRIQSHLADVPDYIVP 496
DL+ LRHD+ A + R+Q HL VP Y++P
Sbjct: 482 ADLQLLRHDRVATHISRVQDHLKHVPKYLLP 512
>gi|169600249|ref|XP_001793547.1| hypothetical protein SNOG_02955 [Phaeosphaeria nodorum SN15]
gi|118578053|sp|Q0UZ59.1|DBP9_PHANO RecName: Full=ATP-dependent RNA helicase DBP9
gi|111068566|gb|EAT89686.1| hypothetical protein SNOG_02955 [Phaeosphaeria nodorum SN15]
Length = 597
Score = 330 bits (847), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 189/509 (37%), Positives = 292/509 (57%), Gaps = 47/509 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ I W PT +Q +AIPL LQ +D+L R+ TG+GKTGA+ +P++ + K
Sbjct: 59 LRGIRDQKWGSPTAVQSKAIPLALQGRDILARSGTGTGKTGAYLLPILHNTLLRKGKT-- 116
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+L+L P+KEL Q+ K + L+ C + V+ +I+ + V + L + PDIV+A
Sbjct: 117 ----SLILVPTKELALQITKVAKALSAHCGQAVRIQNIAGKESEVVTKAKLADNPDIVIA 172
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TPARA A++ L + + L +++DE DLV +G+++D+ + + +PK Q L SATL
Sbjct: 173 TPARASANINTGALAV-TELAHLVVDEGDLVMGYGFKEDLDQIAQNIPKGVQMFLMSATL 231
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+ +V SL L+ +PV+LKL++ ++ Y I E+EK ++Y + KL L++GKT
Sbjct: 232 NTEVESLGSLLCNDPVVLKLDD-LDKDSKRVKQYVIKCAEEEKFLLIYAMFKLGLIKGKT 290
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+FV D+ Y++KL+LEQF I +CVLNSELP +R H V +FN+ +Y+++IASDE +
Sbjct: 291 IVFVGDTDRSYRVKLFLEQFGIKSCVLNSELPLASRLHIVEEFNKNIYNILIASDETEIL 350
Query: 330 TPQINSTNNRKRKR---DKE----SGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTAR 382
Q + +R +K+ DKE SGVSRGIDF VS V+NFDFP + Y HR GRTAR
Sbjct: 351 GSQKKADESRPKKKPKTDKEAKNDSGVSRGIDFLNVSCVLNFDFPATYKSYFHRIGRTAR 410
Query: 383 GKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFN 442
GTA+SF+ +++ + T + +++++ V ++ E ++ Y F+
Sbjct: 411 AGKSGTAISFIIPKDKYRKHKSTTFAGCE-NDEEVLKKVEKH-----QEAGQKLENYNFD 464
Query: 443 LDEVKGFEYRAKDAWR-------------------------SNYFEDNPTDLETLRHDKA 477
+ ++ F YR DA R S YFE+NP L LRHD+
Sbjct: 465 MKRLEPFRYRFGDALRSVTRIAIREARIKEIRLELSKSQKLSRYFEENPEALAHLRHDQT 524
Query: 478 L-YTVRIQSHLADVPDYIVPPALKKLARI 505
L + RIQ HL VPDY++P +K A +
Sbjct: 525 LNHPARIQPHLKHVPDYLLPGGSRKPADV 553
>gi|160380693|sp|A7TPC9.2|DBP9_VANPO RecName: Full=ATP-dependent RNA helicase DBP9
Length = 597
Score = 330 bits (846), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 188/528 (35%), Positives = 300/528 (56%), Gaps = 66/528 (12%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNK-DVLVRARTGSGKTGAFAIPMIQKIINLKQTAQ 88
LQAI + G+ PTLIQ AIPL LQ K D++ +A TG GKT A+ IP+IQ I++ K+T
Sbjct: 29 LQAIKRNGFKNPTLIQSHAIPLALQEKRDIIAKAATGCGKTLAYLIPVIQTILDYKKTNT 88
Query: 89 -----VQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVER 143
T ++L P++EL Q++ + ++ + CS D++ ++IS + SV LL+E+
Sbjct: 89 DKIDGTSNTLGIILVPTRELAQQVNDVLDKMILYCSNDIRSLNISSDMPSSVLTSLLLEK 148
Query: 144 PDIVVATPARALAHLKAKTLDLK-SSLEIVIIDEADLVFSFGYEDDMKAVLKFLP--KLY 200
P+I++ATP + + L + L+ ++IDE DLV +FGY++D+ + ++LP K
Sbjct: 149 PEIIIATPGKLMTLLDTNVESVSLEELKFLVIDEVDLVLTFGYKEDLSKIAEYLPLKKNL 208
Query: 201 QAILASATLSEDVLSLKHLILRNPVILKLEEPAIAP-VSQLAHYHILAQEDEKATILYTL 259
Q L SATL++D+ LK R P ILK + I+ ++L Y++ E +K + Y +
Sbjct: 209 QTFLMSATLNDDIQELKKEFCRAPAILKFNDDEISKDKNKLIQYYVKTSEFDKFLLCYVI 268
Query: 260 LKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDV 319
KL L++GKT+IFVN +D+ Y+LKL LEQF I +C+LNSELPA +R H V QFN+ +Y +
Sbjct: 269 FKLGLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVDQFNKNVYHL 328
Query: 320 IIASDE----KALETPQINSTNNRKRKRDK----------------------ESGVSRGI 353
+IA+D+ K + + ++DK E GVSRG+
Sbjct: 329 LIATDDTEYIKEEDEENDDEIETNSEEQDKVEDSNDTKDKKGKKASKIKKDKEFGVSRGV 388
Query: 354 DFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLR 413
DFQ V+ V+NFD P + Y+HR GRTAR GTA+SFV + ++ ++ + R
Sbjct: 389 DFQNVACVLNFDLPTTAKSYVHRIGRTARAGKTGTAISFV-VPLKEFGKHKPSMYQSTKR 447
Query: 414 EQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS-------------- 459
++ +++ + + + ++PY F+ +++GF YR +D +R+
Sbjct: 448 DEKILSRI----IKQQSKLGLELQPYSFDTKQIEGFRYRMEDGFRAVTQVAIREARVKEL 503
Query: 460 -----------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVP 496
+FE+NP +L++LRHDK L+ R+Q HL VPDY++P
Sbjct: 504 KDELLASEKLKRHFEENPQELQSLRHDKELHPSRVQQHLKRVPDYLLP 551
>gi|344300058|gb|EGW30398.1| hypothetical protein SPAPADRAFT_157367 [Spathaspora passalidarum
NRRL Y-27907]
Length = 578
Score = 330 bits (846), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 199/529 (37%), Positives = 302/529 (57%), Gaps = 71/529 (13%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNK-DVLVRARTGSGKTGAFAIPMIQKIINLKQTAQ 88
LQA+ +LG+ +PTLIQ +IPL L+ K D++ +A TGSGKTGA+ IP++ + L ++
Sbjct: 27 LQALDQLGFEKPTLIQSSSIPLALEEKRDIIAKASTGSGKTGAYCIPIVNNL--LTRSTD 84
Query: 89 VQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
E K+++L P++EL NQ+++ +++L + ++ + +++S V LL+ +P+I++
Sbjct: 85 EHEIKSIILVPTRELSNQVYEFLEKLLVFNNQKINILNLSSNYSDQVLNSLLINKPEIII 144
Query: 149 ATPARALAHLKAKT---LDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLP--KLYQAI 203
+TPA+ + L+ + +DL S++ + IDE DLV SFGY DD+K + +LP K Q
Sbjct: 145 STPAKLIQTLEKNSKGLIDL-STVSNLTIDEVDLVLSFGYLDDLKKLESYLPIKKNLQTF 203
Query: 204 LASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLN 263
L SAT++E++ LK P ILKL + A L Y+ E +K + Y + KLN
Sbjct: 204 LMSATINEELNDLKMRYCTKPAILKLNDET-AEKQSLVQYYAKTTEFDKFLLCYVIFKLN 262
Query: 264 LVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIAS 323
L++GKTIIFVN +D+ Y+LKLYLEQF I C+LNSELP +R H V +FN+ +Y ++IA+
Sbjct: 263 LIKGKTIIFVNNIDRGYRLKLYLEQFGIRCCILNSELPINSRLHIVEEFNKNVYHLLIAT 322
Query: 324 DEKALETPQ-----------------------INSTNNRKRKRDKESGVSRGIDFQFVSN 360
DE T + + + K+D E GVSRG+DF+ V+
Sbjct: 323 DETNDFTVEKEEDSEGEREREEQEQAQEEKKESKKSKKKGAKKDSEYGVSRGVDFRNVAC 382
Query: 361 VINFDFPLDIQCYIHRAGRTARGKNQGTALSFV----SLREQDLMNDGTALSFVSLREQD 416
V+NFD P + YIHR GRTAR G ALSF+ + + N TA ++D
Sbjct: 383 VLNFDLPTTSKAYIHRIGRTARAGKSGMALSFIIPLKEFGKHKIANLATA-------KKD 435
Query: 417 LMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS----------------- 459
V ++ + F IKPYQF++ +V+GF YRA+DA+R+
Sbjct: 436 --EKVLRRIIKQQSRNGFEIKPYQFDMKQVEGFRYRAEDAFRAVTQTSVREARVKELKNE 493
Query: 460 --------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPPALK 500
+FE+NP DL TLRHDK L+ RIQS L VP Y++P + +
Sbjct: 494 LINSEKLKRFFEENPQDLATLRHDKELHPTRIQSQLKRVPQYLLPESAR 542
>gi|449297989|gb|EMC94006.1| hypothetical protein BAUCODRAFT_112682 [Baudoinia compniacensis
UAMH 10762]
Length = 624
Score = 328 bits (841), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 194/538 (36%), Positives = 296/538 (55%), Gaps = 72/538 (13%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQT-AQ 88
LQA+ + + PT +Q + IPL L +DVL RA+TGSGKT A+ +P++ ++ K ++
Sbjct: 39 LQAVNREKFAAPTPVQAKTIPLALTGRDVLARAKTGSGKTLAYLLPVLHGVLRHKAGFSK 98
Query: 89 VQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
V+ET AL+L P+KEL Q+ ++ T C+++++ ++S+ D +V + L E PDIVV
Sbjct: 99 VRETTALLLVPTKELAAQITSTLKTFTSYCTQEIRYENLSKTEDAAVTKARLAETPDIVV 158
Query: 149 ATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
ATPARA+ + ++L L+ ++IDEADLV S+GYE+D++ + LP Q ++ SAT
Sbjct: 159 ATPARAVYWMN-QSLLKSDRLKYLVIDEADLVLSYGYEEDLQTLAAALPNGVQKLMMSAT 217
Query: 209 LSEDVLSLKHLILRN---PVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLV 265
L ++ +L + + P IL L A LA Y I E +K ++YT+ KL L+
Sbjct: 218 LRTEIDTLNSVFFADGTKPEILDLSAEEAAEKPTLAQYTIRTGEADKFLLIYTIFKLQLI 277
Query: 266 QGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE 325
+GK I+FV +++CY++KL+LEQF I + VLNSELP +R HAV +FN+G+YD+I+A+DE
Sbjct: 278 KGKVILFVADIERCYRVKLFLEQFGIRSVVLNSELPVNSRLHAVEEFNKGVYDIIVAADE 337
Query: 326 KAL----------------------ETPQI--------------NSTNNRKR-KRDKESG 348
+ + E P + N RKR +RD+E G
Sbjct: 338 EEVVGQEEAKRKRRKLEIEEDVEGQERPSAEQPPDEESIHHEVKQAANVRKRNRRDREFG 397
Query: 349 VSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALS 408
VSRGIDF+ V+ V+NFD P + Y HR GRTAR G ALSF ++Q + T++
Sbjct: 398 VSRGIDFRNVTCVLNFDLPTTSKSYTHRIGRTARAGQTGMALSFYVPKDQYRKHKSTSIP 457
Query: 409 FVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS--------- 459
E+ L E + I+ + F++ +++ F YR DA R+
Sbjct: 458 QTEHDERIL-----ERIRKRQASVGGSIQEWNFDMAKLEPFRYRFNDALRAVTRIAVREA 512
Query: 460 ----------------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPPALKK 501
+FE+NP DL LRHD + VR Q HL VPDY++P ++
Sbjct: 513 RTKELRQALINSEKLKRHFEENPEDLRHLRHDAETHAVRRQEHLKHVPDYLLPAGGRQ 570
>gi|224003339|ref|XP_002291341.1| dead-box RNA helicase [Thalassiosira pseudonana CCMP1335]
gi|220973117|gb|EED91448.1| dead-box RNA helicase, partial [Thalassiosira pseudonana CCMP1335]
Length = 529
Score = 327 bits (839), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 199/508 (39%), Positives = 298/508 (58%), Gaps = 55/508 (10%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLIL-QNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQ 88
L+A+++L ++ PTL+Q ++IPL L +D+LVRARTGSGKT A+ IP+IQKI+ K+ Q
Sbjct: 7 LKALSRLNYVHPTLVQSKSIPLALTSGRDLLVRARTGSGKTLAYCIPVIQKILGRKKEEQ 66
Query: 89 VQET--KALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDI 146
+ T K ++L P++ELC Q+ K I +LT C+ VK V ++ + QE LL +RPDI
Sbjct: 67 GEGTAVKGVILVPTRELCTQVAKVIDDLTYYCADHVKVVVLNNNSNNLQQEALLRDRPDI 126
Query: 147 VVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
VVATPA + H+++ L+LK S+E +++DEADL+ SFGY +D+ ++K LPK Q L S
Sbjct: 127 VVATPAGLVGHVRSGKLNLKRSVETLVVDEADLILSFGYANDVTEIMKSLPKTCQGFLMS 186
Query: 207 ATLSEDVLSLKHLILRNPVILKLEEP-AIAPVSQLAHYHILAQEDEKATILYTLLKLNLV 265
ATLS ++ +LKH++L +P +LKLEE L +++ +K +LY LKL L+
Sbjct: 187 ATLSPELHNLKHVVLHSPAVLKLEEEDEDGGNGNLMQFYLDLPGKDKFLVLYVFLKLGLL 246
Query: 266 QGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE 325
+GK + FVNT+D Y+LKL+LEQF I + VLN+ELP ++R + + FN G +D +IA+DE
Sbjct: 247 KGKGLFFVNTIDGGYRLKLFLEQFHIRSAVLNAELPLRSRLNIIEHFNVGNFDYLIATDE 306
Query: 326 KA-------LETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAG 378
+ +N++R+RD E GVSRG+DF+ VS V+N D P + Y HR G
Sbjct: 307 ATDMRSHHDGKKKSTKGKSNKRRRRDGEYGVSRGLDFRGVSFVVNVDLPTSPESYTHRIG 366
Query: 379 RTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKP 438
RTARG G AL+ V D D A ++E P
Sbjct: 367 RTARGGANGVALTLV-----DGSKDEEAEMLFQIQENQPTKSSGPC-------------P 408
Query: 439 YQFNLDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLR 473
F+L E++GF YR +D R+ ++F++NP DL+ L+
Sbjct: 409 LDFDLKEIEGFRYRVEDGTRAVTRVAVRETRAAEVKAEILNSERLQSHFQENPADLQLLQ 468
Query: 474 HDK-ALYTVRIQSHLADVPDYIVPPALK 500
HD+ A + ++Q HL VP Y++P ++
Sbjct: 469 HDRQATHISKVQDHLKHVPKYLLPRGME 496
>gi|260817772|ref|XP_002603759.1| hypothetical protein BRAFLDRAFT_86587 [Branchiostoma floridae]
gi|229289082|gb|EEN59770.1| hypothetical protein BRAFLDRAFT_86587 [Branchiostoma floridae]
Length = 359
Score = 327 bits (838), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 174/341 (51%), Positives = 221/341 (64%), Gaps = 56/341 (16%)
Query: 196 LPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATI 255
LPK+YQA L SATLSEDV +LK LIL NPV LKLEE + +L YHI+ +E +K I
Sbjct: 2 LPKIYQAFLMSATLSEDVQALKKLILHNPVTLKLEESQLPESDRLTQYHIMCEEGDKFLI 61
Query: 256 LYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQG 315
+YTLLKL LV+GKTI+FVN++D+CY+LKL+LEQF + CVLNSELP +RCH V QFNQG
Sbjct: 62 IYTLLKLRLVRGKTILFVNSIDRCYRLKLFLEQFSVPACVLNSELPVSSRCHIVNQFNQG 121
Query: 316 LYDVIIASDEKALETPQINS----------TNNRKRKRDKESGVSRGIDFQFVSNVINFD 365
LY+++IA+DE AL+ K+K+DKE GVSRGIDFQFVSNVINFD
Sbjct: 122 LYNLVIATDESALDAEDSGGKEKTGKAKKKAKRFKKKKDKEYGVSRGIDFQFVSNVINFD 181
Query: 366 FPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDG-TALSFVSLREQDLMNDVNEY 424
FP + YIHR GRTARG +QGTALS +S +E L+ TALS D N
Sbjct: 182 FPTQVDSYIHRVGRTARGDSQGTALSLISAQELPLLQQAETALS----------GDTN-- 229
Query: 425 LMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS------------------------- 459
D +IKPY+F ++E++GF YRAKDA RS
Sbjct: 230 --------DPVIKPYRFKMEEIEGFRYRAKDALRSVTKTNVREARLKEIRSEILNSEKLK 281
Query: 460 NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPPALK 500
+YFEDNP DL+ LRHDKAL +++ H+ +VP+Y++PP++K
Sbjct: 282 SYFEDNPRDLQVLRHDKALAASKVKPHMKNVPEYLMPPSMK 322
>gi|401885210|gb|EJT49333.1| ATP-dependent RNA helicase [Trichosporon asahii var. asahii CBS
2479]
Length = 614
Score = 324 bits (830), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 208/549 (37%), Positives = 304/549 (55%), Gaps = 80/549 (14%)
Query: 20 PFTFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQK 79
PF+ L L+A+A L + PTL+Q +AIPL+L+ KDVL RARTGSGKT A+ +P +Q+
Sbjct: 20 PFSTLLDARILRALADLKFANPTLVQAKAIPLLLEGKDVLARARTGSGKTAAYVVPAVQR 79
Query: 80 IINLKQTAQVQE-----TKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVS 134
++ LK E T+A++L P++EL Q+ ++ ++ C V V+++ +
Sbjct: 80 VLELKGATSPAESDYQVTRAVILVPTRELAMQVTNFVKSISTYCEGLVSVVNVASGA-TN 138
Query: 135 VQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDD----MK 190
VQ+ LL + PDIVVATP + LA L++K++DL + L + IDEADL+ S+G++DD M
Sbjct: 139 VQKILLNDNPDIVVATPTKLLALLQSKSIDL-AHLAFLAIDEADLLLSYGHKDDLTRIMD 197
Query: 191 AVLKFLPKL-YQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQE 249
+ F+PKL Q L SATLSEDV +K L+LRNP IL L EPA A S L + + E
Sbjct: 198 PAMGFVPKLGVQGCLMSATLSEDVEGVKGLVLRNPAILTLSEPATAS-SLLTQHFTFSSE 256
Query: 250 DEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAV 309
+K +L+ LLKL L++GK+IIFVN +++ Y+++L+LEQF I CV+NSELP +R H V
Sbjct: 257 RDKFLLLFVLLKLKLIKGKSIIFVNDIERGYRVRLFLEQFGIKCCVVNSELPLASRYHVV 316
Query: 310 YQFNQGLYDVIIASDEKAL-----------------------------------ETPQIN 334
+FN+G+Y V+IA+DE +L +
Sbjct: 317 EEFNRGVYQVVIATDEASLGDEEPEDEEEESEAEEDAEEEQEEKNAEAGPSKRRASSPAP 376
Query: 335 STNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVS 394
+K+KR S ++RGIDF S+VINFD P Y+HR GRTAR + G ALSFV
Sbjct: 377 GAPGKKKKRSAGS-MARGIDFTSASSVINFDLPTTTTAYLHRVGRTARAGHSGLALSFVV 435
Query: 395 LREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFN--LDEVKGFEYR 452
++Q D + + R++ + + + + D IK + + E++GF YR
Sbjct: 436 PKDQ-WGKDKSVSIKTAERDEQVFDRIKSKVKAEGGGD---IKEWDWGGRRGEIEGFRYR 491
Query: 453 AKDAWRS-------------------------NYFEDNPTDLETLRHDKALYTVRIQSHL 487
+DA R+ +F NP DL LRHD L+ R SHL
Sbjct: 492 MEDALRAVTSKRVSDARREEVRRELLNSEKLKQHFAANPLDLAYLRHDAPLHPGRTSSHL 551
Query: 488 ADVPDYIVP 496
VP Y++P
Sbjct: 552 KHVPGYLMP 560
>gi|295674119|ref|XP_002797605.1| ATP-dependent RNA helicase DBP9 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226280255|gb|EEH35821.1| ATP-dependent RNA helicase DBP9 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 607
Score = 323 bits (829), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 199/541 (36%), Positives = 284/541 (52%), Gaps = 106/541 (19%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+ + +PTLIQ +AIPL L KDVL ++N V
Sbjct: 36 LQALTAQKFTKPTLIQAKAIPLALDGKDVL-------------------GVLNDPTNKAV 76
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
Q AL+L P++EL Q+ K + ++++ +++++V +VQ +L + PD+V++
Sbjct: 77 Q---ALILVPTRELAEQVQKVVASFCAFAGKNIRSANLTQKVSDAVQRSILADLPDVVIS 133
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP RA+ ++ + L L+ L ++IDEADLV S+GYE DM+ + K +P+ Q L SAT
Sbjct: 134 TPGRAVVNINSSALSLER-LAHLVIDEADLVLSYGYEQDMQNLAKAVPRGVQTFLMSATF 192
Query: 210 SEDVLSLKHLILRNPVILKLEEP--AIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
S +V +LK L RNPVILKLEE A +SQ + + EDEK + Y + KL LV+G
Sbjct: 193 SSEVDTLKGLFCRNPVILKLEEKDDEGAGISQ---FVVRCAEDEKFLLTYVIFKLQLVKG 249
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
K IIFV VD+CY+LKL+LEQF I +CVLNSELP +R H V +FN+G+YD+IIA+D++
Sbjct: 250 KCIIFVGDVDRCYRLKLFLEQFGIRSCVLNSELPVNSRIHVVQEFNKGVYDIIIAADDQE 309
Query: 328 L--ETPQINSTNNRK--------------------------------------RKRDKES 347
+ E P+ + NRK KR K+S
Sbjct: 310 VLGELPKKSKKPNRKSDEAPKGAGQEDSEENSDTKTSKDGAQDSSDEEVQEHPSKRHKKS 369
Query: 348 ------GVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLM 401
G+SRGIDFQ V+ V+NFD P + Y HR GRT R G ALSFV Q
Sbjct: 370 VKEKDYGISRGIDFQDVACVLNFDLPTTAKSYTHRIGRTGRAGKTGMALSFVVPSNQ--F 427
Query: 402 NDGTALSFVSL-REQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS- 459
SF S R++ ++ + + + E +KPY F + +V+ F YR DA R+
Sbjct: 428 GKHKPTSFPSAKRDEAVLAKITKRQVKAGQE----VKPYHFEMKQVEAFRYRMSDALRAV 483
Query: 460 ------------------------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIV 495
+FE+NP +L LRHD L R+Q+HL VPDY++
Sbjct: 484 TRIAVQEARAREIRQELLKSEKLKRHFEENPEELRQLRHDGELRAARVQAHLKHVPDYLM 543
Query: 496 P 496
P
Sbjct: 544 P 544
>gi|392579442|gb|EIW72569.1| hypothetical protein TREMEDRAFT_72807 [Tremella mesenterica DSM
1558]
Length = 606
Score = 323 bits (828), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 213/577 (36%), Positives = 318/577 (55%), Gaps = 107/577 (18%)
Query: 14 QVYFELPFTFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFA 73
Q++ + PF+ L L+A+A L + PTL+Q +AIPL+L+ KDVL +ARTGSGKT A+A
Sbjct: 12 QLFSQPPFSTLLDARILRALADLSFAHPTLVQAKAIPLLLEGKDVLAKARTGSGKTAAYA 71
Query: 74 IPMIQKIINLKQT-----AQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDIS 128
+P +QKI+++K+T Q T++L+L P++EL Q+ K I L + S
Sbjct: 72 VPALQKILDVKETLSPASENYQVTRSLILVPTRELSLQVTKFITSL----------LAYS 121
Query: 129 EQVDV---SVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGY 185
E + + S L + PDI+V+TP+R L L+++ +DL + L +++IDEADLV S+G+
Sbjct: 122 EHITIYNASSSSTLRADSPDIIVSTPSRLLTLLESRQVDL-THLVLLVIDEADLVLSYGH 180
Query: 186 EDDMKAVL----KFLPKL-YQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQL 240
+++++ + ++P+L Q L SATL E+V S+K +IL NP IL L EP S L
Sbjct: 181 KEELQRLCDPNEGWIPRLGVQGCLMSATLGEEVQSIKGMILHNPAILTLSEPT---SSLL 237
Query: 241 AHYHILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSEL 300
Y+ E +K +LY LLKL L++GK+I+FVNTVD+ Y +KL+LEQF I +CV+N+EL
Sbjct: 238 TQYYTHTSERDKFLLLYVLLKLKLIRGKSIVFVNTVDRGYMVKLFLEQFGIKSCVVNAEL 297
Query: 301 PAKARCHAVYQFNQGLYDVIIASDEKALET------------------------------ 330
P +R H V +FN+G+YDVI+A+DE A +
Sbjct: 298 PLGSRYHVVEEFNRGVYDVIVATDEVAGDGEPPEEESQSVEAELDEGAEEGGEGNDAAEE 357
Query: 331 ---------------PQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIH 375
P +N+ +KR++D S ++RGIDF S+VINFD P + Y+H
Sbjct: 358 VAEEKKAGSSKRKVPPPLNNRKRQKRQKDPASSLARGIDFTSASSVINFDLPTNPTAYMH 417
Query: 376 RAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLH-EDDF 434
R GRTAR + G +LSF+ R + + L VSL + +V E ++ + E
Sbjct: 418 RVGRTARAGHSGLSLSFIVSRSKWSQDK---LRQVSLSTAEHDEEVWERILYRVSKEGGG 474
Query: 435 IIKPYQFN--LDEVKGFEYRAKDAWRS-------------------------NYFEDNPT 467
+K + + E+ GF YR +DA +S +F NP
Sbjct: 475 EMKEWDWGGRKSEIDGFRYRMEDALKSVTTKRVQDARREEVRRELLNSEKLKAHFAANPL 534
Query: 468 DLETLRHDKALYTVRIQSHLADVPDYIVPPALKKLAR 504
DL LRHD L+ RIQSHL VP Y++P K+AR
Sbjct: 535 DLNYLRHDAPLHPARIQSHLKHVPSYLMP----KVAR 567
>gi|256088729|ref|XP_002580478.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
Length = 500
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 197/518 (38%), Positives = 287/518 (55%), Gaps = 76/518 (14%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AI+ L W++PT IQ+ IPL+ K ++V A+TGSGKT AFAIP++ ++ KQ A
Sbjct: 17 LKAISDLNWVKPTDIQQAVIPLVFAKKCLIVHAKTGSGKTAAFAIPILNDLLQEKQFAMC 76
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
Q T +VL+P+KELC+Q+ NI+ L ++ + VDIS D +PL++E PDI++
Sbjct: 77 QSTSVVVLAPTKELCSQVASNIKCLCKYAAKSISSVDISTGHDTDQIKPLILENPDIIIG 136
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP+R + L++ L LK L +++DEADL+F+FGYED+++ + +LP+ QAIL SATL
Sbjct: 137 TPSRLMKVLRSGILSLK-DLRCIVVDEADLIFTFGYEDEIRDLRSYLPQKIQAILMSATL 195
Query: 210 SEDVLSLKHLILRNPVILKLEEP--AIAPV-SQLAHYHILAQEDEKATILYTLLKLNLVQ 266
+ ++ +++N +++E P A P SQL Y I A++++K IL L KL +V+
Sbjct: 196 DDTSKVIRRYLVKNADWVRVELPDEAFLPGDSQLTQYIISAEDNDKYAILIALFKLRIVR 255
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
GKT+IF N+VD+CYKL+L+LE+F I +LNSELP K+R H + QFN+GLYD ++A+DE
Sbjct: 256 GKTLIFTNSVDRCYKLRLFLEEFGIRAALLNSELPVKSRSHVIDQFNRGLYDYLLATDES 315
Query: 327 ALETPQINSTNNRK-----RKRDKESGVSRGIDFQF--VSNVINFDFPLDIQCYIHRAGR 379
+ N+ +K R RD E GVSRGIDFQ +S V F +
Sbjct: 316 QADHSTSNNEGGKKSLKKPRCRDVEYGVSRGIDFQLFRLSEVDGFRY------------- 362
Query: 380 TARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPY 439
R D+M + ++ + IK
Sbjct: 363 ---------------------------------RAADVMRHITRKVVREARLKE--IKIE 387
Query: 440 QFNLDEVKGFEYRAKDAWRSNYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPPAL 499
N + +KG YF+D+ DLE LRHDK L V Q HL DVPDY+VPP+L
Sbjct: 388 LLNSERLKG------------YFQDHIPDLEALRHDKPLKHV-AQPHLKDVPDYLVPPSL 434
Query: 500 KKL----ARIEDDGDEDVRAEPITDEEYNKQYEEYKKR 533
K L + R TD++ N Y + KKR
Sbjct: 435 KALMPGSCHSRKATERWKRRNLHTDDKSNTSYVDLKKR 472
>gi|339245489|ref|XP_003378670.1| putative ATP-dependent RNA helicase DDX56 [Trichinella spiralis]
gi|316972407|gb|EFV56085.1| putative ATP-dependent RNA helicase DDX56 [Trichinella spiralis]
Length = 909
Score = 321 bits (823), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 200/518 (38%), Positives = 278/518 (53%), Gaps = 106/518 (20%)
Query: 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIIN 82
F + + A+ LGW +PTLIQE+ IPL LQ KD++ RARTGSGKT AF+IP+IQKI+
Sbjct: 34 FEVLRVAQMAVKLLGWKKPTLIQEKFIPLALQGKDIVSRARTGSGKTAAFSIPIIQKILE 93
Query: 83 LKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVE 142
KQ++ +Q +A+VL+PS+EL QL +I L + +++CVD+ Q L
Sbjct: 94 EKQSSGMQCIRAVVLAPSRELAKQLCDHINSLCQFLTPEIQCVDLVIAEHAVAQRFSLNS 153
Query: 143 RPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQA 202
PDIVV+TP+R LA LK L L+ +L+ ++DEADLV S+GYE ++ ++ +LP YQA
Sbjct: 154 NPDIVVSTPSRLLAQLKQNNLSLRETLKYFVVDEADLVLSYGYESEITEIISYLPNNYQA 213
Query: 203 ILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKL 262
L SAT++E+V LK L L N VILK+EE + QL YHI
Sbjct: 214 FLTSATMNENVKLLKKLTLHNAVILKIEEAQLPAADQLTQYHI----------------- 256
Query: 263 NLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIA 322
+C+ ++QF NS L YD IIA
Sbjct: 257 ---------------RCH----IVQQF-------NSGL----------------YDTIIA 274
Query: 323 SDEKALETPQINSTNNRKRKRD-KESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTA 381
SDE ++E+P+ + K + KES SRGIDF +SNVINFDFP ++ YIHR GRTA
Sbjct: 275 SDEISVESPEERKQSGTIIKLEKKESTASRGIDFNQISNVINFDFPKTVEEYIHRVGRTA 334
Query: 382 RGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQF 441
R NQGTALSF + RE FVS ++ L +E +F +KPY+
Sbjct: 335 RAWNQGTALSFSTKREA---------KFVSRVKKALAKQ---------YEGEF-LKPYRI 375
Query: 442 NLDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDK 476
N++E+ GF YR DA R+ +YF +NP DL+ +RHD+
Sbjct: 376 NMEELDGFHYRCLDALRAATTLAVKEARLKEIREEVLKSTKLKSYFVENPRDLQLIRHDR 435
Query: 477 ALYTVRIQSHLADVPDYIVPPALKK--LARIEDDGDED 512
R HL VP+YIVP +L+ + +++D D+D
Sbjct: 436 IFKRNRSLKHLKHVPEYIVPKSLRGVPVKSVQNDDDDD 473
>gi|452985016|gb|EME84773.1| hypothetical protein MYCFIDRAFT_207390 [Pseudocercospora fijiensis
CIRAD86]
Length = 658
Score = 321 bits (823), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 196/538 (36%), Positives = 290/538 (53%), Gaps = 72/538 (13%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQAI+K + PT +Q RAIPL L +DVL RA+TGSGKT A+ +P + I+ K ++
Sbjct: 73 LQAISKQKFTTPTPVQSRAIPLALTGQDVLARAKTGSGKTLAYLLPTVHAILQRKAGSKK 132
Query: 90 QETKA-LVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
+T + L+L P+KEL Q+ +++T C+ ++ +I+ D +V L E+PDIV+
Sbjct: 133 SKTTSVLILVPTKELATQVTNAAKDITSFCANAIRIENITRNEDANVTRARLSEQPDIVI 192
Query: 149 ATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
ATP RA + + L L ++L+ +IIDEADL+ + DD++A+ LP Q ++ SA+
Sbjct: 193 ATPGRANQYYNQEVLKL-NALKHLIIDEADLILGYEENDDVQAIAGALPAGVQKMMVSAS 251
Query: 209 LSEDVLSLKHLIL----RNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNL 264
LS+ + L L + P IL L+ LA Y + EDEK +LY + KL L
Sbjct: 252 LSDQLDKLSLLFFPEGSQQPEILDLKSEEAKEKPTLAQYTVKTAEDEKFLLLYAIFKLQL 311
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
++GK IIFV +D+CY++KL+LEQF I +CVLNSELP +R H V +FN+G+Y+ IIA+D
Sbjct: 312 IKGKFIIFVADIDRCYRVKLFLEQFGIRSCVLNSELPVNSRLHVVQEFNRGVYNTIIAAD 371
Query: 325 EKAL------------------------------ETPQINSTNN------RKRKRDKESG 348
E + E +S+ + RK + D+E G
Sbjct: 372 EAEVIGNEGGKRKKRREAEQEDEEVEQEAEAQDAEKENGDSSTSRPAKKQRKSRNDREYG 431
Query: 349 VSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALS 408
VSRGIDFQ V+ V+NFD P + Y HR GRTAR G ALSF +E + T+++
Sbjct: 432 VSRGIDFQNVTCVLNFDLPQSNKSYTHRIGRTARAGQTGMALSFWVPKELYRKHKPTSIA 491
Query: 409 FVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS--------- 459
E+D +V ++ E +K + + +++GF YR DA R+
Sbjct: 492 QC---EKD--EEVITKIVKKQAEKGAEVKEWGLDWAKLEGFRYRLADALRAVTRIAVREA 546
Query: 460 ----------------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPPALKK 501
+FE+NP DL+ LRHD + VR Q HL VPDY++P K+
Sbjct: 547 RTQELRNELIKSEKLKRHFEENPEDLKHLRHDTETHAVRSQPHLKHVPDYLLPQGGKQ 604
>gi|385305572|gb|EIF49536.1| atp-dependent rna helicase dbp9 (dead-box protein 9) [Dekkera
bruxellensis AWRI1499]
Length = 564
Score = 321 bits (823), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 187/504 (37%), Positives = 296/504 (58%), Gaps = 38/504 (7%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNK-DVLVRARTGSGKTGAFAIPMIQKIINLKQTAQ 88
+QAI KLG+ PTL+Q ++I L L++K D++ RA TGSGKT A+ IP+IQ I+ K+ ++
Sbjct: 26 IQAINKLGYEHPTLVQTQSIKLSLEDKKDIIARASTGSGKTAAYCIPIIQSILTDKEGSR 85
Query: 89 VQE--TKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDI 146
E TKA++L P+KEL Q+ + +L + CS++V+ ++ +E + + L+ E P+I
Sbjct: 86 SSEHXTKAIILVPTKELSKQVSDFLNDLCVFCSKEVRLLNATESLGDDLLNSLVDEHPEI 145
Query: 147 VVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAI--- 203
+++TP++ ++ + + L+ +IDE DLV S+GY DD++ + + Q +
Sbjct: 146 IISTPSKLVSIFENHKNLTFADLKYFVIDEVDLVVSYGYNDDLEKLSDQYLNMKQGVQVF 205
Query: 204 LASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLN 263
+ SATL+EDV +LK P +L+L++ + L Y+I E +K ++Y +LKLN
Sbjct: 206 MMSATLNEDVDALKKRFCTKPAVLRLQDVS-EDNKDLRQYYIKTGELDKFLLIYVILKLN 264
Query: 264 LVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIAS 323
L++GK +IFVN +D+ Y+LKLYL+ F I +C+LNSELP +R H V QFN+ +Y ++IA+
Sbjct: 265 LIKGKILIFVNDLDRGYRLKLYLQNFGIRSCILNSELPLNSRLHIVEQFNKNVYHLLIAT 324
Query: 324 DEKALETPQINSTNNRKRKRDKES-GVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTAR 382
DE + + + K GVSRG+DF+ V+ V+NFD P + YIHR GRTAR
Sbjct: 325 DESNEQDAEDKDEKKSSKSSKKXDYGVSRGVDFKNVACVLNFDLPTSSRAYIHRVGRTAR 384
Query: 383 GKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFN 442
G +LSFV ++ A S + R+ + + + T L + ++PYQF+
Sbjct: 385 AGKSGISLSFVVDAKE--WGKHRASSLATARKDEKVMERIRRAQTKL---GYELEPYQFD 439
Query: 443 LDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKA 477
++ F YR +D++RS +FE+NP DL TLRHDKA
Sbjct: 440 KAQLDNFRYRMEDSFRSITRAAIREARLREIKMELITSEKLKRHFEENPEDLATLRHDKA 499
Query: 478 LYTVRIQSHLADVPDYIVPPALKK 501
+ VR +L DVPDY++P A +K
Sbjct: 500 VSKVRSDQNLKDVPDYLLPKAARK 523
>gi|50557380|ref|XP_506098.1| YALI0F31493p [Yarrowia lipolytica]
gi|74689228|sp|Q6BZR4.1|DBP9_YARLI RecName: Full=ATP-dependent RNA helicase DBP9
gi|49651968|emb|CAG78911.1| YALI0F31493p [Yarrowia lipolytica CLIB122]
Length = 544
Score = 321 bits (822), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 183/494 (37%), Positives = 289/494 (58%), Gaps = 39/494 (7%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLIL-QNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQ 88
L +A +PTLIQ IPL L + D+ +A TGSGKT A+ +P+ + ++ ++ +
Sbjct: 21 LSGLAACDMKQPTLIQNTTIPLALDKGVDITAKAVTGSGKTVAYLLPIFELMLRAEKEKR 80
Query: 89 VQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
+T AL++ P++ELC Q+ K I +LT C +K +++++Q+ V LL E+P I+V
Sbjct: 81 DIQT-ALIVVPTRELCEQVSKVITKLTQFCPH-LKSLNVTQQLGDDVISSLLEEKPSIIV 138
Query: 149 ATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
TP+R L + AK +D S + ++IDEADL+ S+GY++D+ + + LPK + SAT
Sbjct: 139 GTPSRLLKY--AKEMDC-SKVGYLVIDEADLLLSYGYKEDLIELSEMLPKTKHTFIMSAT 195
Query: 209 LSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGK 268
L+++ +K R+ V + A +L Y++ E +K + Y + KL LV+GK
Sbjct: 196 LNKESDLMKQQFCRSTVA-SVAVTAAEEERKLLQYYVKCSERDKFLLAYVMFKLQLVKGK 254
Query: 269 TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE--K 326
TI+FVN +D+CY+L+L+LEQF I CVLNSELP +R H V QFN+G+++++I +DE K
Sbjct: 255 TIVFVNEIDRCYRLRLFLEQFGIKACVLNSELPIASRLHIVEQFNKGVFNLLICTDEANK 314
Query: 327 ALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQ 386
E + S ++ R E +RG+DF V+ V+NFD PL + Y+HR GRTAR
Sbjct: 315 LAEASKSASKQTKEVSRAHEYSSTRGLDFMNVAFVLNFDLPLSSRAYVHRVGRTARANKA 374
Query: 387 GTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEV 446
GTALSFV +Q D A + R++ ++ + + N + IKPY F++ +V
Sbjct: 375 GTALSFVVPADQ-WGKDKVAKLDTAKRDEKVLKKI----IKNQESQNMEIKPYSFDMKQV 429
Query: 447 KGFEYRAKDAWR-------------------------SNYFEDNPTDLETLRHDKALYTV 481
+GF YR DA+R + +F++NP DL+ LRHDK L+T
Sbjct: 430 EGFRYRMDDAFRAVTTVGVREARVKEIKTELLNSERLARHFDENPDDLKALRHDKELHTS 489
Query: 482 RIQSHLADVPDYIV 495
++Q+H+ VPDY++
Sbjct: 490 KVQAHMKRVPDYLL 503
>gi|353231552|emb|CCD77970.1| putative dead box ATP-dependent RNA helicase [Schistosoma mansoni]
Length = 555
Score = 321 bits (822), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 200/518 (38%), Positives = 288/518 (55%), Gaps = 76/518 (14%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AI+ L W++PT IQ+ IPL+ K ++V A+TGSGKT AFAIP++ ++ KQ A
Sbjct: 17 LKAISDLNWVKPTDIQQAVIPLVFAKKCLIVHAKTGSGKTAAFAIPILNDLLQEKQFAMC 76
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
Q T +VL+P+KELC+Q+ NI+ L ++ + VDIS D +PL++E PDI++
Sbjct: 77 QSTSVVVLAPTKELCSQVASNIKCLCKYAAKSISSVDISTGHDTDQIKPLILENPDIIIG 136
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP+R + L++ L LK L +++DEADL+F+FGYED+++ + +LP+ QAIL SATL
Sbjct: 137 TPSRLMKVLRSGILSLK-DLRCIVVDEADLIFTFGYEDEIRDLRSYLPQKIQAILMSATL 195
Query: 210 SEDVLSLKHLILRNPVILKLEEP--AIAPV-SQLAHYHILAQEDEKATILYTLLKLNLVQ 266
+ ++ +++N +++E P A P SQL Y I A++++K IL L KL +V+
Sbjct: 196 DDTSKVIRRYLVKNADWVRVELPDEAFLPGDSQLTQYIISAEDNDKYAILIALFKLRIVR 255
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
GKT+IF N+VD+CYKL+L+LE+F I +LNSELP K+R H + QFN+GLYD ++A+DE
Sbjct: 256 GKTLIFTNSVDRCYKLRLFLEEFGIRAALLNSELPVKSRSHVIDQFNRGLYDYLLATDES 315
Query: 327 ALETPQINSTNNRK-----RKRDKESGVSRGIDFQF--VSNVINFDFPLDIQCYIHRAGR 379
+ N+ +K R RD E GVSRGIDFQ +S V F +
Sbjct: 316 QADHSTSNNEGGKKSLKKPRCRDVEYGVSRGIDFQLFRLSEVDGFRY------------- 362
Query: 380 TARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPY 439
R D+M T +RE L IK
Sbjct: 363 ----------------RAADVMRHITR---KVVREARLKE----------------IKIE 387
Query: 440 QFNLDEVKGFEYRAKDAWRSNYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPPAL 499
N + +KG+ F+D+ DLE LRHDK L V Q HL DVPDY+VPP+L
Sbjct: 388 LLNSERLKGY------------FQDHIPDLEALRHDKPLKHV-AQPHLKDVPDYLVPPSL 434
Query: 500 KKL----ARIEDDGDEDVRAEPITDEEYNKQYEEYKKR 533
K L + R TD++ N Y + KKR
Sbjct: 435 KALMPGSCHSRKATERWKRRNLHTDDKSNTSYVDLKKR 472
>gi|225684674|gb|EEH22958.1| ATP-dependent RNA helicase dbp9 [Paracoccidioides brasiliensis
Pb03]
Length = 885
Score = 320 bits (821), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 198/541 (36%), Positives = 281/541 (51%), Gaps = 106/541 (19%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+ + +PTLIQ AIPL L KDVL G P + +
Sbjct: 314 LQALTAQKFTKPTLIQAEAIPLALDGKDVL----------GVLDDPTNRAV--------- 354
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+AL+L P++EL Q+ K + ++++ +++++V +VQ +L + PD+V++
Sbjct: 355 ---QALILVPTRELAEQVQKVVASFCAFAGKNIRSANLTQKVSDAVQRSILADLPDVVIS 411
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP RA+ ++ + L L+ L ++IDEADLV S+GYE DM+ + K +P+ Q L SAT
Sbjct: 412 TPGRAVVNINSSALSLER-LAHLVIDEADLVLSYGYEQDMQNLAKAVPRGVQTFLMSATF 470
Query: 210 SEDVLSLKHLILRNPVILKLEEP--AIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
S +V +LK L RNPVILKLEE A +SQ + EDEK + Y + KL LV+G
Sbjct: 471 SSEVDTLKGLFCRNPVILKLEEKDDEGAGISQFV---VRCAEDEKFLLTYVIFKLQLVKG 527
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
K IIFV VD+CY+LKL+LEQF I +CVLNSELP +R H V +FN+G+YD+IIA+D++
Sbjct: 528 KCIIFVGDVDRCYRLKLFLEQFGIRSCVLNSELPVNSRIHVVQEFNKGVYDIIIAADDQE 587
Query: 328 L--ETPQINSTNNRK--------------------------------------RKRDKES 347
+ E P+ + NRK KR K+S
Sbjct: 588 VLGELPKKSKKPNRKSDEAPGGAGQEDSEENPDTKTSKDGAQDSSDEEVQEHPSKRHKKS 647
Query: 348 ------GVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLM 401
G+SRGIDFQ V+ V+NFD P + Y HR GRT R G ALSFV Q
Sbjct: 648 VKEKDYGISRGIDFQDVACVLNFDLPTTAKSYTHRIGRTGRAGKTGMALSFVVPSNQ--F 705
Query: 402 NDGTALSFVSL-REQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS- 459
SF S R++ ++ + + E +KPY F + +V+ F YR DA R+
Sbjct: 706 GKHKPTSFPSAKRDEAVLAKITKRQAKAGQE----VKPYHFEMKQVEAFRYRMSDALRAV 761
Query: 460 ------------------------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIV 495
+FE+NP +L LRHD L R+Q+HL VPDY++
Sbjct: 762 TRIAVQEARAREIRQELLKSEKLKRHFEENPEELRQLRHDGELRAARVQAHLKHVPDYLM 821
Query: 496 P 496
P
Sbjct: 822 P 822
>gi|397565637|gb|EJK44705.1| hypothetical protein THAOC_36732 [Thalassiosira oceanica]
Length = 698
Score = 320 bits (820), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 198/568 (34%), Positives = 305/568 (53%), Gaps = 98/568 (17%)
Query: 22 TFTLFCIPL-------QAIAKLGWLEPTLIQERAIPL-ILQNKDVLVRARTGSGKTGAFA 73
TF C + +A+++L ++ PTL+Q R+IPL + +D+LVRARTGSGKT A+
Sbjct: 17 TFPSLCASVGIDPRLRKALSRLNYVHPTLVQSRSIPLAVTSGRDLLVRARTGSGKTVAYC 76
Query: 74 IPMIQKIINLKQTAQVQE-----TKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDI- 127
+P + ++L P++ELCNQ+ + + +LT C+ V+ V +
Sbjct: 77 VPAGIDGDGGGDDETDGGGGGAAVRGVILVPTRELCNQVAQVLNDLTYYCADVVRTVVLS 136
Query: 128 ------SEQVDVSV--QEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADL 179
S++ D + QE LL +RPDIVVATPA +A+++A LDLK S+E +++DEADL
Sbjct: 137 SKGSKGSKRRDAATLQQEALLRDRPDIVVATPAGLVANVRAGLLDLKRSVETLVVDEADL 196
Query: 180 VFSFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEP-----AI 234
+ SFGY DD+ ++K LP+ Q L SAT+S ++ LK ++L +P +LKLEE A
Sbjct: 197 ILSFGYADDVTEIMKALPRTCQGFLMSATISPELNKLKGVVLHSPAVLKLEEDDGAELAN 256
Query: 235 APVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTC 294
A L +++ ++ ++Y LKL L++GK + FVN++D Y+LKL+LEQF I +
Sbjct: 257 AREGNLMQFYLDLPSKDRYLLVYVFLKLGLLRGKGLFFVNSIDGGYRLKLFLEQFHIRSA 316
Query: 295 VLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKR----------- 343
VLNSELP K+R + + FN G +D +IA+DE +T+ R R
Sbjct: 317 VLNSELPLKSRLNIIEHFNVGNFDYLIATDE---------ATHRRSRSENESGGGGGDDG 367
Query: 344 --------------DKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
D E G SRG+DF+ VS V+NFD P + + Y HR GRTARG G A
Sbjct: 368 GRKKSRRKSEKRRRDGEYGASRGLDFRGVSFVVNFDMPPNPESYTHRIGRTARGGASGVA 427
Query: 390 LSFV--SLREQ-----DLMNDGTALSFVSLREQDL---MNDVNEYLMTNLH-EDDFIIKP 438
L+ V S+ E+ D+ + S + +L +D + +H + P
Sbjct: 428 LTLVDGSVAEEAETLLDIQESQPSRSAAGSGDGELREAADDGAGMEGSGVHPQVQAQPGP 487
Query: 439 YQFNLDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLR 473
+F+L E++GF YR +D R+ +FE NP DL+ L+
Sbjct: 488 LEFDLKEIEGFRYRVEDVNRAVTRVAVKETRAAEVKAEILNSERLQAHFEANPADLQLLQ 547
Query: 474 HDK-ALYTVRIQSHLADVPDYIVPPALK 500
HD+ A + ++QSHL +VP Y++P ++
Sbjct: 548 HDRQATHVSKVQSHLKNVPGYLLPRGMQ 575
>gi|367040143|ref|XP_003650452.1| hypothetical protein THITE_2072362 [Thielavia terrestris NRRL 8126]
gi|346997713|gb|AEO64116.1| hypothetical protein THITE_2072362 [Thielavia terrestris NRRL 8126]
Length = 866
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 190/523 (36%), Positives = 281/523 (53%), Gaps = 92/523 (17%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
+QA+AK + +PTL+Q +AIPL LQ +DVL +ARTGSGKT A+ +P++ I+ K T
Sbjct: 323 VQAVAKQSFEKPTLVQRKAIPLALQGQDVLCKARTGSGKTAAYVLPVLSGILRRKITDPT 382
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T AL+L P++EL +Q+ K I++ + C++D+ ++E V +VQ LL PD+VVA
Sbjct: 383 PCTAALILVPTRELADQIFKAIEQFSAFCAKDIHAARLTENVSDAVQRSLLANIPDVVVA 442
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TPARA + + L L + L+ +++DEADLV S+GY++DM+ + + LPK Q I+ SATL
Sbjct: 443 TPARAWHSVNSSALSL-AKLQYLVLDEADLVLSYGYDEDMENLSRALPKGVQTIMMSATL 501
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
S ++ +LK + RNP +L L+E A +L +++ ED+K I Y + KL L++G
Sbjct: 502 STELETLKGMFCRNPTLLDLKEEFGAEDEKLTQFYVKCGEDDKWLIAYLIFKLQLIKGPC 561
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA-- 327
+IFV +D+ Y+LKL+ EQF I +C+LNSELP R + +FN+G+YD+IIASDEK+
Sbjct: 562 LIFVADIDRSYRLKLFFEQFSIRSCILNSELPVNTRIKIIEEFNRGIYDIIIASDEKSEL 621
Query: 328 ----------------------------LETPQINSTNNRKRKRDKESGVSRGIDFQFVS 359
+E P+ RK ++D+E GVSR
Sbjct: 622 FGDEAAGEGGDDKKESKKKSKAKEGEDNVEPPK----KRRKNRKDEEYGVSR-------- 669
Query: 360 NVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMN 419
GRTAR G ALSFV +E + T++ E+ L
Sbjct: 670 ------------------GRTARAGRAGIALSFVVPKELFGKHKPTSIKSCEKDEKVLAK 711
Query: 420 DVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS-------------------- 459
+ + N ++PY FN +++ F YR DA R+
Sbjct: 712 IIKQQAKLNRK-----LEPYNFNKSQMEAFRYRMNDALRAVTKVAIREARTKELRQELLR 766
Query: 460 -----NYFEDNPTDLETLRHDKAL-YTVRIQSHLADVPDYIVP 496
YFE+NPT+L LRHD L R Q HL VPDY++P
Sbjct: 767 SETLKRYFEENPTELAHLRHDGELGRRTRQQPHLKHVPDYLLP 809
>gi|396501090|ref|XP_003845894.1| similar to ATP-dependent RNA helicase dbp9 [Leptosphaeria maculans
JN3]
gi|312222475|emb|CBY02415.1| similar to ATP-dependent RNA helicase dbp9 [Leptosphaeria maculans
JN3]
Length = 634
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 184/503 (36%), Positives = 289/503 (57%), Gaps = 46/503 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ I W PT +Q +AIPL LQ +D+L R+ TG+GKTGA+ +P++ + K +
Sbjct: 97 LRGIRDQKWSIPTAVQSQAIPLALQGRDILARSGTGTGKTGAYLLPILHNTLRRKGKS-- 154
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+L+L P+KEL Q+ K + L+ C +D++ +I+ + V + L +RPDIV+A
Sbjct: 155 ----SLILVPTKELALQITKVAKALSAYCGQDIRIQNIAGKESELVTKAKLADRPDIVIA 210
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TPARA ++ L + + L +++DE DLV +G++DD+ + + +P Q L SATL
Sbjct: 211 TPARAWININNGALSV-TELAHLVVDEGDLVMGYGFKDDLDQIEENIPTGVQKFLMSATL 269
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+ +V SL L+ +PV+LKL++ ++ Y I E+EK ++Y + KL L++GK+
Sbjct: 270 NTEVKSLGTLLCVDPVVLKLDD-LDKNAQKVKQYVIKCAEEEKFLLIYAMFKLQLIKGKS 328
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE-KAL 328
I+FV D+ Y++KL+LEQF I +CVLNSELP +R H V +FN+ +Y+++IASDE + L
Sbjct: 329 IVFVGDTDRSYRVKLFLEQFGIKSCVLNSELPLASRLHIVEEFNKNIYNILIASDETEIL 388
Query: 329 ETPQINSTN-----NRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARG 383
+I + ++ + +SGVSRGIDF VS V+NFDFP + Y HR GRTAR
Sbjct: 389 GQQEIGESRPKKKSKKENESKTDSGVSRGIDFLNVSCVLNFDFPGTYKSYFHRIGRTARA 448
Query: 384 KNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNL 443
GTA+SF+ +++ + T S +++++ V ++ E+ ++ Y F++
Sbjct: 449 GKSGTAISFIIPKDKYRKHKSTTFSGCE-NDEEILKKVEKH-----QEEGQKLENYNFDM 502
Query: 444 DEVKGFEYRAKDAWR-------------------------SNYFEDNPTDLETLRHDKAL 478
++ F YR DA R S YFE+NP L LRHD+ L
Sbjct: 503 KRLEPFRYRFGDALRSVTRIAIREARIKEIRLELSKSAKLSRYFEENPEALAHLRHDQTL 562
Query: 479 -YTVRIQSHLADVPDYIVPPALK 500
+ RIQ HL VPDY++P K
Sbjct: 563 NHPARIQPHLKHVPDYLLPGGKK 585
>gi|146197830|dbj|BAF57628.1| DEAD/H box protein [Dugesia japonica]
Length = 529
Score = 318 bits (814), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 191/539 (35%), Positives = 301/539 (55%), Gaps = 54/539 (10%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ +++L W PT IQ IP IL+ K++++ ARTGSGKT A+ IP IQ+++ K
Sbjct: 13 LKTLSELNWDRPTDIQSGVIPHILEKKNLIISARTGSGKTAAYMIPTIQELLVSKIGDSE 72
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
Q+ L+L PSKELC Q +KN+ LT D+ V+IS Q + +P+L++RPD ++
Sbjct: 73 QKVSVLILCPSKELCAQSYKNLTMLTKYL--DLSSVNISSQKKHDILKPILLKRPDYIIG 130
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL-YQAILASAT 208
TP++ L ++K +++K L+ +IIDEADL+ FGY +D++ + + Q ++ SAT
Sbjct: 131 TPSQVLGYVKEGLINIKE-LKFLIIDEADLMSGFGYREDIEKLSNDINAANSQILMLSAT 189
Query: 209 LSEDVLSLKHLILRNPVILKLEEPAIAPVS-QLAHYHILAQEDEKATILYTLLKLNLVQG 267
L EDV +L+H+ L+L + P + QL E+EK IL + KLNL++G
Sbjct: 190 LGEDVKALRHIFKVRWFRLELNNSEMLPSTEQLTQLVKKCDEEEKFNILVGMFKLNLIKG 249
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
KTIIF NTVDKCY++++ + F IS+ VLN+E+P +R H V++FN G YD+++ASDE
Sbjct: 250 KTIIFANTVDKCYRMRIVFDTFHISSVVLNAEMPVASRNHIVHEFNVGRYDLLLASDEDN 309
Query: 328 LETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQG 387
L +K +D+E +SRGIDF VSNVIN D P ++ Y+HR GR AR +G
Sbjct: 310 LIDNAEKDFTKKKLNKDEEFKISRGIDFNQVSNVINMDCPSTVESYVHRVGRAARVNQKG 369
Query: 388 TALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVK 447
A+ FVS+++ D F ++ + LM D N + KP++ + + +
Sbjct: 370 QAVLFVSIKDND--------KFTAI-DNMLMKDNNGV---------SVFKPFKCSRNIYE 411
Query: 448 GFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKALYTVR 482
GF YR +A YF++NPT+++ L+H+K + R
Sbjct: 412 GFVYRITEALSKCTRASIRQARLLDIHKEIENSHALQAYFQENPTEMKVLQHNKPVIKER 471
Query: 483 IQSHLADVPDYIVPPALKKLARIEDDGDEDVRAEPITDEEYNKQYE-----EYKKRSKE 536
Q H+ +VP Y++PP L++ + R + T NK+ +KK++K+
Sbjct: 472 NQ-HMKNVPSYLIPPILQEKLKKNSKKRRRTRFKEGTKPSINKKKSSNPLFSFKKKAKK 529
>gi|238497093|ref|XP_002379782.1| ATP dependent RNA helicase (Dbp9), putative [Aspergillus flavus
NRRL3357]
gi|220694662|gb|EED51006.1| ATP dependent RNA helicase (Dbp9), putative [Aspergillus flavus
NRRL3357]
Length = 526
Score = 318 bits (814), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 177/459 (38%), Positives = 270/459 (58%), Gaps = 58/459 (12%)
Query: 92 TKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATP 151
T L+L P++EL Q+ + C +DV+ V+++++V +VQ +L + PD+VV+TP
Sbjct: 23 TTGLILVPTRELAEQVQNVVTTFAAFCGKDVRSVNLTQKVSDAVQRTMLADYPDLVVSTP 82
Query: 152 ARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSE 211
AR + +L + L L++ L ++IDEADLV S+GYE+D+ A+ K +P+ Q L SATL++
Sbjct: 83 ARVVTNLGSSALSLEN-LTHLVIDEADLVLSYGYEEDINALAKAIPRGVQTFLMSATLTD 141
Query: 212 DVLSLKHLILRNPVILKLEEP--AIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+V +LK L R+PV LKLE+ A VSQ + EDEK + Y + KL L++GK
Sbjct: 142 EVDTLKGLFCRSPVTLKLEDKDDQGAGVSQFV---VRCAEDEKFLLTYVIFKLQLIKGKV 198
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE---- 325
IIFV+ VD+CY++KL+LEQF I +CVLNSELP +R H V +FN+G+YD++IA+DE
Sbjct: 199 IIFVDDVDRCYRVKLFLEQFGIKSCVLNSELPINSRIHVVQEFNKGVYDILIAADEQEVI 258
Query: 326 ------KALETPQINSTN---------NRKRK---RDKESGVSRGIDFQFVSNVINFDFP 367
K+ ET + S++ +++RK ++K+ G+SRGIDFQ V+ V+NFD P
Sbjct: 259 GARKSKKSKETEEAGSSDEDEGEPEDKSKRRKVSGKEKDYGISRGIDFQNVACVLNFDLP 318
Query: 368 LDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMT 427
+ Y HR GRT R G ALSFV ++Q + T+ + S ++ ++ + +
Sbjct: 319 STSKSYTHRIGRTGRAGKTGMALSFVIPKDQHGKHRPTSTA-TSKHDESVLAKIVKRQGK 377
Query: 428 NLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS-------------------------NYF 462
HE +KPY F + +V+ F YR DA R+ +F
Sbjct: 378 LGHE----VKPYHFEMKQVEAFRYRMTDALRAVTRLAVQEARAREIRQELIKSEKLKRHF 433
Query: 463 EDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPPALKK 501
E+NP +L LRHD L + R+Q HL +P+Y++P KK
Sbjct: 434 EENPEELRQLRHDDELRSARVQPHLKHIPEYLMPAKGKK 472
>gi|168019520|ref|XP_001762292.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686370|gb|EDQ72759.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 558
Score = 317 bits (812), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 188/532 (35%), Positives = 293/532 (55%), Gaps = 72/532 (13%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A++K G PT +Q +A+PLIL+ KDV+ RA+TGSGKT ++ +P++ K+ L +
Sbjct: 8 LRALSKKGLSYPTPVQAKAMPLILEGKDVVARAKTGSGKTLSYLLPLVHKL--LAEGGSK 65
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ +A+VL P++ELC Q++ L C ++ V ++ + + + L PDI+VA
Sbjct: 66 KGPRAMVLVPTRELCQQVYDEATSLAEYCGATLRVVQLATTMSTATMKMSLARVPDILVA 125
Query: 150 TPARALAHLKAKTLD---LKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
TPAR A + + L+ SL ++++DEADL+FS+GYE+D++++ ++P+ Q +L S
Sbjct: 126 TPARIAACISQNVIQPAVLEESLAMLVLDEADLLFSYGYEEDLRSLAVYVPRKCQCLLMS 185
Query: 207 ATLSEDVLSLKHLILRNPVILKLEE-------PAIAPVSQLAHYHILAQEDEKATILYTL 259
AT S DV LK L+L NPV L L E ++ P S + + + + +K + ++
Sbjct: 186 ATASPDVDKLKKLVLHNPVTLTLTEEVDGSGDTSVVPKS-VQQFSVHCKSKDKLLYMLSI 244
Query: 260 LKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDV 319
LK +L+Q K IIFVNT+D ++LKL+LEQF I + VLN ELP +R H + QFN GL++
Sbjct: 245 LKYDLIQKKAIIFVNTIDTGFRLKLFLEQFGIKSAVLNGELPQNSRLHILQQFNVGLFEH 304
Query: 320 IIASDE-KAL----------------ETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVI 362
+IA+D+ K+L E + S +++K RD E GV RGIDF+ V V+
Sbjct: 305 LIATDDGKSLQPVSSTSKESSSTKDSEAEPVESKSSKKAVRDTEFGVVRGIDFKNVRTVV 364
Query: 363 NFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND-GTALSFVSLREQDLMNDV 421
N+D P + YIHR GRT R N G +LS V +++++ LS V +Q+
Sbjct: 365 NYDMPETVAGYIHRIGRTGRAGNAGISLSLVPPEDEEILKQIKVELSGVDEGQQN----- 419
Query: 422 NEYLMTNLHEDDFIIKPYQ-FNLDEVKGFEYRAKDAWRS--------------------- 459
+ +I P+ + V+ YRA+D RS
Sbjct: 420 ----------NKALISPFPLLSKTAVESLRYRAEDVMRSVTKIAVREARAKELRIEILNS 469
Query: 460 ----NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPPALKKLARIED 507
+FEDNPTDLE L+HDK L V +HL VP+Y+ P + +R +
Sbjct: 470 ERLKAHFEDNPTDLELLKHDKVLSKVAPAAHLKTVPEYLRDPTTEAASRAHN 521
>gi|226286779|gb|EEH42292.1| ATP-dependent RNA helicase DBP9 [Paracoccidioides brasiliensis
Pb18]
Length = 627
Score = 315 bits (808), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 197/558 (35%), Positives = 282/558 (50%), Gaps = 120/558 (21%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+ + +PTLIQ AIPL L KDVL G P + +
Sbjct: 36 LQALTAQKFTKPTLIQAEAIPLALDGKDVL----------GVLDDPTNRAV--------- 76
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+AL+L P++EL Q+ K + ++++ +++++V +VQ +L + PD+V++
Sbjct: 77 ---QALILVPTRELAEQVQKVVASFCAFAGKNIRSANLTQKVSDAVQRSILADLPDVVIS 133
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP RA+ ++ + L L+ L ++IDEADLV S+GYE DM+ + K +P+ Q L SAT
Sbjct: 134 TPGRAVVNINSSALSLER-LAHLVIDEADLVLSYGYEQDMQNLAKAVPRGVQTFLMSATF 192
Query: 210 SEDVLSLKHLILRNPVILKLEEP--AIAPVSQL--------------AHYH---ILAQED 250
S +V +LK L RNPVILKLEE A +SQ H+ I ED
Sbjct: 193 SSEVDTLKGLFCRNPVILKLEEKDDEGAGISQFVVRYGAYWRGLPFQTHFTNRIIRCAED 252
Query: 251 EKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVY 310
EK + Y + KL LV+GK IIFV VD+CY+LKL+LEQF I +CVLNSELP +R H V
Sbjct: 253 EKFLLTYVIFKLQLVKGKCIIFVGDVDRCYRLKLFLEQFGIRSCVLNSELPVNSRIHVVQ 312
Query: 311 QFNQGLYDVIIASDEKAL--ETPQINSTNNRKRK-------------------------- 342
+FN+G+YD+IIA+D++ + E P+ + NRK
Sbjct: 313 EFNKGVYDIIIAADDQEVLGELPKKSKKPNRKSDEAARGAGQEDSEENPDTKTSKDGAQD 372
Query: 343 ------------------RDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384
++K+ G+SRGIDFQ V+ V+NFD P + Y HR GRT R
Sbjct: 373 SSDEEVQEHPSKRYKKSVKEKDYGISRGIDFQDVACVLNFDLPTTAKSYTHRIGRTGRAG 432
Query: 385 NQGTALSFVSLREQDLMNDGTALSFVSL-REQDLMNDVNEYLMTNLHEDDFIIKPYQFNL 443
G ALSFV Q SF S R++ ++ + + E +KPY F +
Sbjct: 433 KTGMALSFVVPSNQ--FGKHKPTSFPSAKRDEAVLAKITKRQAKAGQE----VKPYHFEM 486
Query: 444 DEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKAL 478
+V+ F YR DA R+ +FE+NP +L LRHD L
Sbjct: 487 KQVEAFRYRMSDALRAVTRIAVQEARAREIRQELLKSEKLKRHFEENPEELRQLRHDGEL 546
Query: 479 YTVRIQSHLADVPDYIVP 496
R+Q+HL VPDY++P
Sbjct: 547 RAARVQAHLKHVPDYLMP 564
>gi|170578156|ref|XP_001894291.1| DEAD/DEAH box helicase family protein [Brugia malayi]
gi|158599187|gb|EDP36872.1| DEAD/DEAH box helicase family protein [Brugia malayi]
Length = 599
Score = 313 bits (803), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 194/513 (37%), Positives = 294/513 (57%), Gaps = 57/513 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ I + GW PTLIQ R IP +NK++L RARTGSGKT AF +P++QK++ LK +
Sbjct: 85 LKVIGEFGWERPTLIQSRMIPTAFENKNILARARTGSGKTAAFMLPLVQKVLQLKCNSSS 144
Query: 90 QETK---ALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDI 146
A+ + PSKEL Q + + +LT K + ++ +E ++V+ + L+++PD
Sbjct: 145 NGDAGPFAVFIVPSKELAKQTYSLLCKLTEKFPF-LMSLNFAE-LNVNTDDGWLLKKPDF 202
Query: 147 VVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
VV+TP R L LK K S++ V++DEADL+ SFGY ++M+ + F P +Q I S
Sbjct: 203 VVSTPGRLLHALK-KYGKPCESVKHVVLDEADLLLSFGYAEEMRLIKNFFPAHHQTIFTS 261
Query: 207 ATLSEDVLSLKHLILRNPVIL-KLEEPAIAPVSQLAHYHILAQ-EDEKATILYTLLKLNL 264
AT++E+V +LK L + P++L KL+E + QL+ YHI Q E+E+ I LLKL L
Sbjct: 262 ATMTENVEALKELYVTGPIVLMKLKEGQLPSSKQLSQYHISCQNEEERFAIFLALLKLKL 321
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
+ GK+IIFV D+CY+L L+L+ F I +C+LN+++P +RCH V QFN+G Y +IASD
Sbjct: 322 IVGKSIIFVRDTDRCYQLGLFLQAFNIRSCILNAQMPMNSRCHVVEQFNEGRYSYVIASD 381
Query: 325 --EKALETPQINSTNNRK-------------RKRDKESGVSRGIDFQFVSNVINFDFPLD 369
+ + E+ + + + + DKESG+SRGIDF V+NVINFDFP
Sbjct: 382 INDVSGESQAVMKDEDDEDISKKKKMQKKKRKHIDKESGISRGIDFHHVANVINFDFPTS 441
Query: 370 IQCYIHRAGRTARGKNQ---GTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLM 426
+ YIHR G + N A++ +R ++L SFV LR ++++ +
Sbjct: 442 LNSYIHRVGSSKEEINAQLGHRAITPYEVRIKELE------SFV-LRTREVLAACTK--- 491
Query: 427 TNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRSNYFEDNPTDLETLRHDKALYTVRIQS- 485
T + E L E++ R+K YF NP + L HDK L++V + S
Sbjct: 492 TAIREA---------RLAEIRAEILRSKRL--EAYFAKNPRERAALEHDKKLFSVNLHSP 540
Query: 486 HLADVPDYIVPPALKKLARIEDDGDEDVRAEPI 518
+ DVPDY+VPP+L+ L + R+EP+
Sbjct: 541 AIGDVPDYMVPPSLRGL---------NYRSEPV 564
>gi|406694736|gb|EKC98058.1| ATP-dependent RNA helicase [Trichosporon asahii var. asahii CBS
8904]
Length = 644
Score = 311 bits (796), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 208/578 (35%), Positives = 303/578 (52%), Gaps = 108/578 (18%)
Query: 20 PFTFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQK 79
PF+ L L+A+A L + PTL+Q +AIPL+L+ KDVL RARTGSGKT A+ +P +Q+
Sbjct: 20 PFSTLLDARILRALADLKFANPTLVQAKAIPLLLEGKDVLARARTGSGKTAAYVVPAVQR 79
Query: 80 IINLKQTAQVQE-----TKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISE----- 129
++ LK E T+A++L P++EL Q+ ++ ++ C V V+++
Sbjct: 80 VLELKGATSPAESDYQVTRAVILVPTRELAMQVTNFVKSISTYCEGLVSVVNVASGATNV 139
Query: 130 ------------------------QVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDL 165
QV LL + PDIVVATP + LA L++K++DL
Sbjct: 140 QKAQNKCGHLRCLPSELQPSQLNPQVQALTSRILLNDNPDIVVATPTKLLALLQSKSIDL 199
Query: 166 KSSLEIVIIDEADLVFSFGYEDD----MKAVLKFLPKL-YQAILASATLSEDVLSLKHLI 220
+ L + IDEADL+ S+G++DD M + F+PKL Q L SATLSEDV +K L+
Sbjct: 200 -AHLAFLAIDEADLLLSYGHKDDLTRIMDPAMGFVPKLGVQGCLMSATLSEDVEGVKGLV 258
Query: 221 LRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCY 280
LRNP IL L EPA A S L + + E +K +L+ LLKL L++GK+IIFVN +++ Y
Sbjct: 259 LRNPAILTLSEPATAS-SLLTQHFTFSSERDKFLLLFVLLKLKLIKGKSIIFVNDIERGY 317
Query: 281 KLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL------------ 328
+++L+LEQF I CV+NSELP +R H V +FN+G+Y V+IA+DE +L
Sbjct: 318 RVRLFLEQFGIKCCVVNSELPLASRYHVVEEFNRGVYQVVIATDEASLGDEEPEDEEEES 377
Query: 329 -----------------------ETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFD 365
+ +K+KR+ S ++RGIDF S+VINFD
Sbjct: 378 EAEEDAEEEQEEKNAEAGPSKRRASSPAPGAPGKKKKRNAGS-MARGIDFTSASSVINFD 436
Query: 366 FPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYL 425
P Y+HR GRTAR + G ALSFV ++Q D + + R++ + + + +
Sbjct: 437 LPTTTTAYLHRVGRTARAGHSGLALSFVVPKDQ-WGKDKSVSIKTAERDEQVFDRIKSKV 495
Query: 426 MTNLHEDDFIIKPYQFN--LDEVKGFEYRAKDAWRS------------------------ 459
D IK + + E++GF YR +DA R+
Sbjct: 496 KAEGGGD---IKEWDWGGRRGEIEGFRYRMEDALRAVTSKRVSDARREEVRRELLNSEKL 552
Query: 460 -NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVP 496
+F NP DL LRHD L+ R SHL VP Y++P
Sbjct: 553 KQHFAANPLDLAYLRHDAPLHPGRTSSHLKHVPGYLMP 590
>gi|367029669|ref|XP_003664118.1| hypothetical protein MYCTH_2081249 [Myceliophthora thermophila ATCC
42464]
gi|347011388|gb|AEO58873.1| hypothetical protein MYCTH_2081249 [Myceliophthora thermophila ATCC
42464]
Length = 873
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 188/529 (35%), Positives = 281/529 (53%), Gaps = 89/529 (16%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
+QAIAK + +PTL+Q +AIPL L+ +DVL +A+TGSGKT A+ +P++ I+ K
Sbjct: 326 VQAIAKQNFEKPTLVQRKAIPLALKGQDVLCKAKTGSGKTAAYVLPVLSTILKRKAVDPT 385
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T AL+L P++EL +Q+ K I++ + C++D+ ++E V +VQ LL PD+VV+
Sbjct: 386 PFTAALILVPTRELADQVFKAIEQFSAFCAKDIHAARLTENVSDAVQRSLLANVPDVVVS 445
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TPARA H + + + L+ +++DEADLV S+GY++DM+ + + LPK Q I+ SATL
Sbjct: 446 TPARAW-HSVSSSALSLAKLQHLVLDEADLVLSYGYDEDMENISRSLPKGVQTIMMSATL 504
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
S ++ +LK + RNP +L L E A +L +++ E++K I Y + KL L++G
Sbjct: 505 SAELDALKGIFCRNPTVLDLHEEFGAEDEKLTQFYVKCSEEDKWLISYLIFKLQLIKGPC 564
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA-- 327
+IFV +D+ Y+LKL+ EQF I +CVLNSELP R + +FN+G+YD+IIASDEK+
Sbjct: 565 LIFVADIDRSYRLKLFFEQFSIRSCVLNSELPINTRIKIIEEFNRGIYDIIIASDEKSEL 624
Query: 328 ---------------LETPQINSTN--------------NRKRKRDKESGVSRGIDFQFV 358
+ + NS + R+ K+D+E GVSR
Sbjct: 625 FGDEAADAEEEKKKKKQKQKSNSNDEAEKKDEGAEQPKKKRRYKKDEEYGVSR------- 677
Query: 359 SNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLM 418
GRTAR G ALSFV +E + T + E+ L
Sbjct: 678 -------------------GRTARAGRAGIALSFVVPKELHGKHKPTTIKSTEKDEKVLA 718
Query: 419 NDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS------------------- 459
+ + N ++PY FN +++ F YR DA R+
Sbjct: 719 KVMRQQAKLNRK-----LEPYNFNKSQMEAFRYRMNDALRAVTKVAIREARTKELRQELL 773
Query: 460 ------NYFEDNPTDLETLRHDKAL-YTVRIQSHLADVPDYIVPPALKK 501
YFE+NPT+L LRHD L + R Q HL VPDY++P KK
Sbjct: 774 RSEALKRYFEENPTELAHLRHDGELGHATRQQPHLKHVPDYLLPKEGKK 822
>gi|320035635|gb|EFW17576.1| ATP-dependent RNA helicase [Coccidioides posadasii str. Silveira]
Length = 467
Score = 309 bits (791), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 169/408 (41%), Positives = 251/408 (61%), Gaps = 38/408 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+ K + +PTL+Q AIPL+L KDVL RA+TGSGKT A+ +P++Q I+ K
Sbjct: 35 LQALTKQKFTKPTLVQAEAIPLVLSGKDVLARAKTGSGKTAAYLLPILQSILQKKIANPT 94
Query: 90 QET-KALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
Q++ AL+L P++EL Q+ + + C +D++ +++++V +VQ +L + PDI++
Sbjct: 95 QKSISALILVPTRELAEQVQNAVVSFSSFCGKDIRSANLTQKVSDAVQRAILADLPDIII 154
Query: 149 ATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
+TPARA+ + + +L L + L ++IDEADLV S+GYE DM+ + K +P+ Q +L SAT
Sbjct: 155 STPARAIINTNSSSLSL-NDLTHLVIDEADLVLSYGYEQDMQNLAKAIPRGVQTLLMSAT 213
Query: 209 LSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGK 268
L+ +V +LK L R+PVILKLEE A + +A + + EDEK + Y + KL LV+GK
Sbjct: 214 LTSEVDALKGLFCRSPVILKLEE-AEDEGAGIAQFAVKCAEDEKFLLTYVIFKLQLVKGK 272
Query: 269 TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE--- 325
IIFV +D+ Y+LKL+LEQF I +CVLNSELP +R H V +FN+G+YD+IIA+D+
Sbjct: 273 CIIFVGDIDRSYRLKLFLEQFGIKSCVLNSELPVNSRIHVVQEFNKGVYDIIIAADDQEV 332
Query: 326 ------KALETP-QINSTNNRKRKRDK-----------------------ESGVSRGIDF 355
K +TP Q N N + + +K + G+SRGIDF
Sbjct: 333 IGEIPKKGSKTPEQSNGENGDEPEEEKGFSDEDEVEPPPSKKRKKSTKEKDYGISRGIDF 392
Query: 356 QFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND 403
Q V+ V+NFD P + Y HR GRT R G + ++SL Q+ D
Sbjct: 393 QDVACVLNFDLPTTAKSYTHRIGRTGRAGKTG--MLYLSLCLQNCTAD 438
>gi|398405364|ref|XP_003854148.1| hypothetical protein MYCGRDRAFT_92212 [Zymoseptoria tritici IPO323]
gi|339474031|gb|EGP89124.1| hypothetical protein MYCGRDRAFT_92212 [Zymoseptoria tritici IPO323]
Length = 658
Score = 308 bits (790), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 189/559 (33%), Positives = 286/559 (51%), Gaps = 94/559 (16%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+ + PT +Q++AIPL + K VL RA+TGSGKT A+ +P++ I+ K
Sbjct: 51 LQALTREKLSTPTSVQQKAIPLAIAGKHVLARAKTGSGKTLAYLLPILHAILARKAGTTT 110
Query: 90 QE-----TKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVER- 143
+ T AL+L P+KEL Q+ +++ T C+ D++C +I+ + D +V L +
Sbjct: 111 SKKSKNVTSALILVPTKELAVQVAATVKDFTTFCAGDIRCENITRKEDSAVTRARLADAV 170
Query: 144 PDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAI 203
PDIV+ATP+RA + + L ++ L ++IDEADLV S+ Y++D++++ LP Q I
Sbjct: 171 PDIVIATPSRACQWINQEVLKVED-LRHLVIDEADLVLSYEYDEDLQSLATSLPTGVQKI 229
Query: 204 LASATLSEDVLSLKHLIL-----RNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYT 258
+ SATL +V +L L P IL L + + LA + + EDEK ++Y
Sbjct: 230 MMSATLRAEVDTLTELFFGKEEGAGPTILDLSKEEADEKATLAQFTVRTAEDEKFLLIYA 289
Query: 259 LLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYD 318
+ KL L+ GK I+FV +D+CY++KL+LEQF I +CVLNSELP +R H V +FN+G+YD
Sbjct: 290 IFKLQLITGKVIVFVADIDRCYRVKLFLEQFGIRSCVLNSELPVNSRLHVVEEFNRGVYD 349
Query: 319 VIIASDEKAL----ETPQINSTNNRK---------------------------------- 340
+IIA+DE + E+ NNRK
Sbjct: 350 IIIAADEGEIIGNEESKGRRKKNNRKAAQQEDADLEDADEQPADDILPPVEDEEAEADST 409
Query: 341 --------------RKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQ 386
+ D+E GVSRGIDF++V+ V+NFD P + Y HR GRTAR
Sbjct: 410 SATVTSRPAKKPRRSQTDREYGVSRGIDFRYVTCVLNFDLPPTAKSYTHRIGRTARAGRT 469
Query: 387 GTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEV 446
G ALSF E + + + + + ++ D+ + + + +K + + ++
Sbjct: 470 GMALSFHVPAELYRKHKPSTIPQCA-NDDSVLADI----IASQAQKSAEVKAWGLDWAKL 524
Query: 447 KGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKALYTV 481
GF YR DA RS +FE+NP DL LRHD + V
Sbjct: 525 DGFRYRLADALRSVTRIAVREARTKELRAELIKSEKLKRHFEENPDDLRHLRHDTESHAV 584
Query: 482 RIQSHLADVPDYIVPPALK 500
R Q HL VP+Y++P K
Sbjct: 585 RAQPHLKHVPEYLLPSGGK 603
>gi|384495993|gb|EIE86484.1| hypothetical protein RO3G_11195 [Rhizopus delemar RA 99-880]
Length = 454
Score = 307 bits (787), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 171/411 (41%), Positives = 241/411 (58%), Gaps = 52/411 (12%)
Query: 131 VDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMK 190
+ +Q PLL+E+PDI+V+TP++ L HL+A+ + L SLE ++IDEADLV SFGYEDD++
Sbjct: 1 MSAQLQRPLLLEKPDIIVSTPSKTLTHLEAQNMVLSESLENLVIDEADLVLSFGYEDDVR 60
Query: 191 AVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQED 250
+L FLPK+YQ+ L SAT ++++ L L+LR P IL LE+ S L Y + E
Sbjct: 61 KILSFLPKIYQSFLMSATFTKEIEELTALVLRKPAILALEDSE-EEASSLTQYVVQCSEF 119
Query: 251 EKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVY 310
EK + ++KL L++GK ++FVN +D+CYKLKL+LEQF I +CVLNSELP +R H V
Sbjct: 120 EKFLFTFVIIKLRLIKGKILLFVNDIDRCYKLKLFLEQFSIKSCVLNSELPLNSRYHIVE 179
Query: 311 QFNQGLYDVIIASDEKALE-------------------TPQINSTNNRKRKRDKESGVSR 351
+FN+G+YD +IA+DE L+ N +K K+DKE GVSR
Sbjct: 180 EFNRGIYDYLIATDESELKGEQDSEDEDEEEKKEGEEEEKAKKKKNKQKVKKDKEYGVSR 239
Query: 352 GIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVS 411
G+DFQ V+ V+NFDFP + Y HR GRTARG NQG +LSFV +E + D +S
Sbjct: 240 GVDFQGVAAVVNFDFPTSSKAYTHRIGRTARGGNQGMSLSFVVTKE--FVEDNKEVS--- 294
Query: 412 LREQDLMND-VNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS----------- 459
R + + ++ V E + +K Y F V GF+YR +DA ++
Sbjct: 295 -RGRGVHDEAVYERVKKQQEAKKAELKSYSFEKKNVAGFKYRVQDALKAVNKVAIKEARI 353
Query: 460 --------------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVP 496
+FED P DLE LRHD AL ++Q H+ +P Y++P
Sbjct: 354 KEIKREILNSEKLKAHFEDKPKDLEFLRHDVALQPAKVQEHMKHIPSYLMP 404
>gi|25148203|ref|NP_740966.1| Protein C24H12.4, isoform a [Caenorhabditis elegans]
gi|351020852|emb|CCD62828.1| Protein C24H12.4, isoform a [Caenorhabditis elegans]
Length = 634
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 191/521 (36%), Positives = 287/521 (55%), Gaps = 74/521 (14%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L++I +LGW + +QE I L L+NK+++ RARTGSGKTGAF IP++QK+I +T
Sbjct: 101 LKSIGELGWEKANQVQESVISLALENKNIMGRARTGSGKTGAFLIPLVQKLIAESKTNDG 160
Query: 90 Q-ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEP--LLVERPDI 146
A++++P+KEL Q++K L +K S+ + + D++ +E L +R +
Sbjct: 161 SVGPSAVIIAPTKELITQIYK----LFVKLSQALPFLQAINLCDINEEENSVWLEDRSHV 216
Query: 147 VVATPARAL--AHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAIL 204
VV TP + L L+ + L S L ++DEADL+ SFGYE++M + LP YQ ++
Sbjct: 217 VVTTPGKLLRMCSLRPEYCTLVSYL---VMDEADLLLSFGYEEEMIKIRSKLPPTYQCLM 273
Query: 205 ASATLSEDVLSLKHLILRNPVI-LKLEEPAIAPVSQLAHYHILAQEDE-KATILYTLLKL 262
SATL +D+ +LK L + PVI +KL E + QL Y + DE + IL + KL
Sbjct: 274 TSATLKDDMTTLKKLFMTGPVITIKLTEGDLPNSDQLTQYQLTCGSDEERFAILVAMFKL 333
Query: 263 NLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIA 322
L+ G++I+FVNT+D+CYKL L L F + +C+LNS +PA +RCH + QFN+G Y ++IA
Sbjct: 334 KLIVGRSILFVNTIDRCYKLMLILRVFGLKSCILNSAMPANSRCHVINQFNEGSYQIVIA 393
Query: 323 SD--------------EKALETPQINSTNNRK-RKRDKESGVSRGIDFQFVSNVINFDFP 367
SD K+ E P+ + +K K DKESGVSRGIDF VSNV+NFDFP
Sbjct: 394 SDVSDADGSKLKEEIAGKSDEKPEKDEKKGKKASKLDKESGVSRGIDFHHVSNVVNFDFP 453
Query: 368 LDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMT 427
YIHR GRTARG N+GTALSF E+ + + + ++N+ +
Sbjct: 454 ETTDAYIHRVGRTARGFNKGTALSFCIPSERAHL-------------EQIQEEINQQMGR 500
Query: 428 NLHEDDFIIKPYQFNLDEVKGFEYRAKDA---------------------WRS----NYF 462
+++PY+F + E+ F R ++A RS +F
Sbjct: 501 K------VLQPYEFRIKELDTFLLRTREALSKCTKGVIKKARLKEIRQELMRSANLQTFF 554
Query: 463 EDNPTDLETLRHDKALYTVRIQS-HLADVPDYIVPPALKKL 502
N + ++ D ++I S +ADV Y+VP AL+ +
Sbjct: 555 AKNEREKLLMQTDCHPVMLKINSPAIADVTSYMVPEALRGM 595
>gi|116202485|ref|XP_001227054.1| hypothetical protein CHGG_09127 [Chaetomium globosum CBS 148.51]
gi|88177645|gb|EAQ85113.1| hypothetical protein CHGG_09127 [Chaetomium globosum CBS 148.51]
Length = 1029
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 191/529 (36%), Positives = 284/529 (53%), Gaps = 54/529 (10%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
+QA+AK + +PTL+Q +AIPL LQ +DVL +A+TGSGKT A+ +P++ I+ K T
Sbjct: 318 VQAVAKQSFEKPTLVQRKAIPLALQGQDVLCKAKTGSGKTAAYVLPVLSAILKRKSTDPA 377
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T L+L P++EL +Q+ K I++ + C++D+ ++E V +VQ LL PDIVV+
Sbjct: 378 PFTAGLILVPTRELADQVFKAIEQFSAFCAKDIHAAKLTENVSDAVQRSLLANVPDIVVS 437
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TPARA + + L L S L+ +++DEADLV S+GY++DM+ + + LPK Q + SATL
Sbjct: 438 TPARAWHSVNSSALSL-SQLQYLVLDEADLVLSYGYDEDMENIARALPKGVQTTMMSATL 496
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
S ++ +LK + RNP +L L+E A +L +++ ED+K + Y + KL L++G
Sbjct: 497 SAELDTLKGIFCRNPTVLDLQEEFGAEDEKLTQFYVKCAEDDKWLVSYLVFKLQLIKGPC 556
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA-- 327
+IFV +D+ Y+LK F I +CVLNSELP R + +FN+G+YD+IIASDEK+
Sbjct: 557 LIFVADIDRSYRLK-----FSIRSCVLNSELPINTRIKIIEEFNRGIYDIIIASDEKSEV 611
Query: 328 ---LETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384
+K+ ++E G + + D + + R GRTAR
Sbjct: 612 FGDAAADAEAEKEPKKKSNNEEDGAEQPKKKRRQQKK-------DEEYGVSR-GRTARAG 663
Query: 385 NQGTALSFVSLREQDLMNDGTALSFVSLREQDL--MNDVNEYLMTNLHEDDFIIKPYQFN 442
G ALSFV +E + TA+ E+ L + E L L +PY FN
Sbjct: 664 RAGIALSFVIPKEFHGKHRPTAIKSTEKDEKVLAKVTRQQEKLGRKL-------EPYNFN 716
Query: 443 LDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKA 477
+++ F YR DA R+ YFE+NPT+L LRHD
Sbjct: 717 KSQMEAFRYRMNDALRAVTKVAIREARTKELRQELLRSETLKRYFEENPTELSHLRHDGE 776
Query: 478 L-YTVRIQSHLADVPDYIVPPALKKLARIEDDGDEDVRAEPITDEEYNK 525
L T R Q HL VPDY++P KK E G + E D ++ K
Sbjct: 777 LGRTTRQQPHLKHVPDYLLPKDGKKALASEHVGFVPFKKEGGKDRKHRK 825
>gi|357441703|ref|XP_003591129.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355480177|gb|AES61380.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 604
Score = 304 bits (778), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 188/500 (37%), Positives = 286/500 (57%), Gaps = 42/500 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++A+ K +PT IQ AIPLIL+ KDV+ RA+TGSGKT A+ +P++QK+ TA V
Sbjct: 37 VRALLKKRIEKPTPIQHVAIPLILEGKDVVARAKTGSGKTLAYLLPLLQKLF----TANV 92
Query: 90 QETK----ALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPD 145
K VL+PS+ELC Q++ ++ L C +K V ++ + + + LV PD
Sbjct: 93 DRKKLAPNVFVLAPSRELCQQIYVEVKSLLELCKVPLKAVQLNSNMLATDLQAALVGPPD 152
Query: 146 IVVATP---ARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQA 202
++++TP A+ L++ + + SLE +++DEADL+ S+GYE+D+KA+ +P+ Q
Sbjct: 153 VLISTPACIAKCLSNSVLQAASINGSLETLVLDEADLLLSYGYENDIKALTPHIPRSCQC 212
Query: 203 ILASATLSEDVLSLKHLILRNPVILKLEEPA-----IAPVSQLAHYHILAQEDEKATILY 257
+L SAT S+DV LK L+L NPVIL L E + P + + I ++K +
Sbjct: 213 LLMSATSSDDVDKLKKLMLHNPVILTLPEVGNRKDEVIP-KNVQQFWIYCPANDKLLYIL 271
Query: 258 TLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLY 317
+LKL LVQ K +IF N +D ++LKL+LE+F I + VLN+ELP +R H + +FN GL+
Sbjct: 272 AMLKLELVQKKVLIFTNNIDTSFRLKLFLEKFGIKSAVLNAELPQNSRLHILEEFNAGLF 331
Query: 318 DVIIASD-----EKALETPQINSTNNRKRKR------DKESGVSRGIDFQFVSNVINFDF 366
D +IA+D EK E P+ N ++K ++ D E GV RGIDF+ V VINF+
Sbjct: 332 DYLIATDISQSTEKD-EAPKENIVGSKKSRKYTKLKLDSEFGVVRGIDFKNVYTVINFEM 390
Query: 367 PLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEY-L 425
P + Y+HR GRT R + GT++S VS E D + SFV E + N + E+ L
Sbjct: 391 PRSVTGYVHRIGRTGRAYSSGTSISLVSTDEMDTFEE--VRSFVGDNENNGSNSIAEFPL 448
Query: 426 MTNLHEDDFIIKPYQF--NLDEVKGFEYRAKD--------AWRSNYFEDNPTDLETLRHD 475
+T + + ++ ++ E RA+D A + +F+ NP DL+ L+HD
Sbjct: 449 LTKSAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSAKLTAHFQTNPRDLDLLKHD 508
Query: 476 KALYTVRIQSHLADVPDYIV 495
K L HL DVPDY++
Sbjct: 509 KVLSKTAPPPHLRDVPDYLI 528
>gi|331232346|ref|XP_003328835.1| hypothetical protein PGTG_10136 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309307825|gb|EFP84416.1| hypothetical protein PGTG_10136 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 668
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 203/552 (36%), Positives = 292/552 (52%), Gaps = 105/552 (19%)
Query: 41 PTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLK-------QTAQVQETK 93
PT +Q+ IPL L KD+L R+ TGSGKT A+AIP++Q I+ K TA T
Sbjct: 45 PTQVQKEFIPLALNGKDILARSSTGSGKTLAYAIPILQSILENKFKRRTSTTTALTTLTM 104
Query: 94 ALVLSPSKELCNQL------------HKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLV 141
A++L P++EL Q+ ++N E+ S D K S++ V +
Sbjct: 105 AVILVPTRELSAQVTLAISSLCKGLGNENAIEIINLASSDSKR---SKRKHAQVDQSYTS 161
Query: 142 ERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYE-DDMKAVLKF----- 195
PDI+V+TPAR L L+ D+ S L +++DEADL+ S+G+ DD+KA+L
Sbjct: 162 NPPDIIVSTPARLLDRLRTTPTDM-SGLSFLVLDEADLILSYGHSFDDIKAILSGSGSSG 220
Query: 196 -----LPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHI-LAQE 249
P +Q+ L SAT++ +V LK L+LRNP IL ++E +I +S L + I + E
Sbjct: 221 THSWRFPTFFQSFLMSATMTSEVAELKSLVLRNPEILYVKE-SINELSNLTQFSIKVPNE 279
Query: 250 DEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAV 309
+K ++Y + +L L++GK ++FVN+ DK Y+LKL+LE+F I + VLNSELP +R HAV
Sbjct: 280 QDKFLLIYVIFRLKLIKGKGLVFVNSTDKSYQLKLFLEKFGIRSGVLNSELPFNSRYHAV 339
Query: 310 YQFNQGLYDVIIASDEK-----------------------------ALETPQINSTNNRK 340
+FN+G++D +IA+DE A ET TN +K
Sbjct: 340 EEFNKGIFDYLIATDESENNLPIEKKASNPTPAPTDPNLIPTQPSVAEETTDNVVTNPKK 399
Query: 341 RK-RDKES-------GVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSF 392
RK RD +S GVSRGIDF V+ VINFD PL Q Y HR GRTAR G LSF
Sbjct: 400 RKNRDDKSQDKPIDYGVSRGIDFVNVACVINFDLPLSTQSYTHRIGRTARAGRTGIGLSF 459
Query: 393 V-SLREQDLMNDGTA--LSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGF 449
V S + ++ T+ L RE ++ + +T I K Y+F++ +V+GF
Sbjct: 460 VLSTARMEPSSNKTSKNLQETCARETEMWKKIEAEQITR----GSIPKEYKFDMTQVEGF 515
Query: 450 EYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKALYTVRIQ 484
YR +D RS ++FE+NP DL L+HDK L+ RIQ
Sbjct: 516 RYRMEDGLRSVTKAAIREARIKEIKNEILNSTKLKSHFEENPNDLMFLKHDKPLHPTRIQ 575
Query: 485 SHLADVPDYIVP 496
H+ VP Y++P
Sbjct: 576 PHMKHVPSYLIP 587
>gi|449451323|ref|XP_004143411.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 16-like [Cucumis
sativus]
gi|449508529|ref|XP_004163338.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 16-like [Cucumis
sativus]
Length = 596
Score = 303 bits (776), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 196/520 (37%), Positives = 276/520 (53%), Gaps = 65/520 (12%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++A+ K +PT IQ AIPLIL+ KDV+ RA+TGSGKT A+ +P++QK+ T +
Sbjct: 33 VRALIKKEIQKPTPIQHVAIPLILEGKDVVARAKTGSGKTFAYLLPLLQKLFTGSSTKKK 92
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
A+VL P++EL Q++K I L C VK ++ + S L PDI+VA
Sbjct: 93 SGPSAVVLVPTRELSQQVYKEISSLIETCRVQVKVAQLTSSMSHSDLRTALAGPPDIIVA 152
Query: 150 TPARALAHLKAKTL---DLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
TPA L A L + SLEI+++DEADL+ S+GYEDD+KA +P+ Q +L S
Sbjct: 153 TPACIPKCLSAGVLQPTSINESLEILVLDEADLLLSYGYEDDIKAFAAHVPRSCQCLLMS 212
Query: 207 ATLSEDVLSLKHLILRNPVILKLEEPAIAPV------SQLAHYHILAQEDEKATILYTLL 260
AT SEDV LK LIL NP IL L P + V + + I +K + +LL
Sbjct: 213 ATSSEDVEKLKKLILHNPFILTL--PEVGDVKDDLIPKNVQQFSISCDARDKLLHILSLL 270
Query: 261 KLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVI 320
KL+LVQ K +IF N++D ++LKL+LE+F I + +LN+ELP +R H + +FN GL+D +
Sbjct: 271 KLDLVQKKVLIFTNSIDMGFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYL 330
Query: 321 IASDEKALETPQINSTNN----RKRKR-----DKESGVSRGIDFQFVSNVINFDFPLDIQ 371
IA+D+ + + N N + RKR D E GV RGIDF+ V VINF+ P
Sbjct: 331 IATDDSQTKEKEANEEGNVDKRKSRKRAKQKIDSEFGVVRGIDFKNVYTVINFELPPSAS 390
Query: 372 CYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHE 431
YIHR GRT R N G ++S VS E D ++ +L +
Sbjct: 391 GYIHRIGRTGRA-----------------YNTGASISLVSPDEMDNFEEIQSFLRADGDT 433
Query: 432 DDFIIKPYQ-FNLDEVKGFEYRAKDAWRS-------------------------NYFEDN 465
D II P+ + V+ YRA+D +S +FE N
Sbjct: 434 D--IIVPFPLLTKNAVESLRYRAEDVSKSVTKLAIRESRALDLRNEILNSEKLKAHFESN 491
Query: 466 PTDLETLRHDKALYTVRIQSHLADVPDYIVPPALKKLARI 505
P DL+ L+HDK L HL DVPDY+V P ++ ++I
Sbjct: 492 PKDLDLLKHDKILSKNPPAPHLRDVPDYLVDPVTQEASKI 531
>gi|255579537|ref|XP_002530611.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223529859|gb|EEF31791.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 616
Score = 303 bits (776), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 183/509 (35%), Positives = 281/509 (55%), Gaps = 60/509 (11%)
Query: 40 EPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSP 99
+PT IQ AIPLIL+ KDV+ RA+TGSGKT A+ +P++QK+ + + + A +L P
Sbjct: 60 KPTPIQRVAIPLILEGKDVVARAKTGSGKTLAYLLPLLQKLFSDSGSKKKLAPSAFILVP 119
Query: 100 SKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATP---ARALA 156
S ELC Q++K + L C +K V ++ ++ S + PDI++++P A+ L+
Sbjct: 120 SGELCQQVYKEVSALIDWCKVQLKAVQLTSKMSGSDLRTAIAGPPDILISSPASLAKCLS 179
Query: 157 HLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSL 216
++ + SLEI+++DEADL+ SFGYEDD++A+ +P+ Q +L SAT S+DV L
Sbjct: 180 VGLLQSASINDSLEILVLDEADLLLSFGYEDDLRALTALIPRRCQCLLMSATSSDDVDKL 239
Query: 217 KHLILRNPVILKLEEPAI----APVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTIIF 272
K L+L NP IL L E A + + I +K + LLKL+LVQ K +IF
Sbjct: 240 KKLMLHNPYILTLPEVEGNKDEAIPKNVQQFWISCSGRDKLVHILALLKLDLVQKKVLIF 299
Query: 273 VNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE-KALETP 331
N++D ++L+L+LE+F I + +LN+ELP +R H + +FN GL+D +IA+D+ + E
Sbjct: 300 TNSIDMSFRLRLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDSETKEKE 359
Query: 332 QINSTNN---------RKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTAR 382
Q + N K+K D E GV RGIDF+ V V+N+D PL+ Y+HR GRT R
Sbjct: 360 QEQADRNLAQSRKSKKSKQKLDSEFGVVRGIDFKNVHTVVNYDMPLNAAGYVHRIGRTGR 419
Query: 383 GKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQ-F 441
G N G+++S VS E +++ DV +L + ++D II P+
Sbjct: 420 G-----------------YNSGSSVSLVSPDEMEILEDVKSFLGDDENKDSNIIAPFPLL 462
Query: 442 NLDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDK 476
+ V+ YRA+D +S +FE NP DL+ L+HDK
Sbjct: 463 TKNAVESLRYRAEDVAKSVTKIAVKEARAQDLRNEILNSEKLKAHFEANPRDLDLLKHDK 522
Query: 477 ALYTVRIQSHLADVPDYIVPPALKKLARI 505
L HL DVPDY++ K+ +++
Sbjct: 523 VLSKNPPAPHLRDVPDYLMDATTKEASKM 551
>gi|341896819|gb|EGT52754.1| hypothetical protein CAEBREN_22546 [Caenorhabditis brenneri]
Length = 637
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 187/524 (35%), Positives = 287/524 (54%), Gaps = 75/524 (14%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L++I +LGW + T +QE I L L+NK+++ RARTGSGKTGAF IP++QK+I T
Sbjct: 99 LKSIGELGWEKATQVQESLISLALENKNIMGRARTGSGKTGAFLIPLVQKLITESATNDG 158
Query: 90 Q-ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEP--LLVERPDI 146
A+V++P+KEL Q++K L +K S+ + + D++ +E L +R +
Sbjct: 159 SVGPSAVVIAPTKELITQIYK----LFVKLSQALPFLQAINLCDINEEENSVWLEDRSHV 214
Query: 147 VVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
VV TP + L + + S + +++DEADL+ SFGYE++M + LP YQ ++ S
Sbjct: 215 VVTTPGKLLRMCTLRP-EYCSLVNYLVMDEADLLLSFGYEEEMIKIRSKLPPTYQCVMTS 273
Query: 207 ATLSEDVLSLKHLILRNPVI-LKLEEPAIAPVSQLAHYHI-LAQEDEKATILYTLLKLNL 264
ATL +D+ +LK L + PVI +KL E + QL Y + A ++E+ IL + KL L
Sbjct: 274 ATLKDDMTTLKKLFMTGPVITIKLTEGDLPNSDQLTQYQLTCASDEERFAILVAMFKLKL 333
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
+ G++I+FVN++D+CYKL L L F + +C+LNS +PA +RCH + QFN+G Y ++IASD
Sbjct: 334 IVGRSILFVNSIDRCYKLMLILRVFGLKSCILNSAMPANSRCHVINQFNEGSYQIVIASD 393
Query: 325 ----------EKALETPQINSTNNRKRKR----------DKESGVSRGIDFQFVSNVINF 364
E+ P+ K + DKESGVSRGIDF VSNV+NF
Sbjct: 394 VSDADGSKLKEQLAAVPEDTPEEGGKTAKKEKKAGGKKLDKESGVSRGIDFHHVSNVVNF 453
Query: 365 DFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEY 424
DFP YIHR GRTARG N+GTALSF + +E+ ++ + ++N+
Sbjct: 454 DFPETTDAYIHRVGRTARGFNKGTALSFCTPQERPYLD-------------TIQEEINQQ 500
Query: 425 LMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDA---------------------WRS---- 459
+ +++PY+F + E+ F R ++A RS
Sbjct: 501 MGRK------VLQPYEFRIKELDTFLLRTREALAKCTKGVIKKARLKEIRQELMRSANLQ 554
Query: 460 NYFEDNPTDLETLRHDKALYTVRIQS-HLADVPDYIVPPALKKL 502
+F N + ++ D ++I S +ADV Y+VP AL+ +
Sbjct: 555 TFFAKNEREKLLMQTDCHPVMLKINSPAIADVTSYMVPEALRGM 598
>gi|325191602|emb|CCA25813.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
Length = 654
Score = 301 bits (772), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 193/548 (35%), Positives = 289/548 (52%), Gaps = 92/548 (16%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQ---- 85
++A KL + TL+Q IPL LQ KD++VRARTGSGKT AFA+P++ KI+ K+
Sbjct: 26 IKATQKLNYTHATLVQVHCIPLALQGKDLIVRARTGSGKTAAFALPLLHKILMHKESEAS 85
Query: 86 -TAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERP 144
T T+A++L P++EL +Q+ + + L C + + ++ Q +S+Q+ LL + P
Sbjct: 86 STGSRSVTQAIILVPTRELVDQVREQLWNLMHYCRNRISLLALTGQ-SMSIQQALLRDAP 144
Query: 145 DIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAIL 204
DI+++TP R ++HL+A D +++ +IIDEADL+ SFG + D+ ++ LPK Q +
Sbjct: 145 DILISTPGRIVSHLEAGYFD-PANIHSLIIDEADLILSFGSKSDLCSIFDHLPKAIQILC 203
Query: 205 ASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNL 264
SATLS D+ +LK + N ILKLEE +L +++ +K +LY LLKL L
Sbjct: 204 MSATLSPDLRALKKSVFHNAAILKLEEEVTD--GKLQQFYLRIPPKDKELLLYALLKLGL 261
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
+ GK + FVN Y+LKL+ EQF I + VLN+E+P +R H + ++N+GL+D +IA+D
Sbjct: 262 LHGKILFFVNVTASAYRLKLFFEQFHIKSAVLNAEMPHNSRKHILQEYNRGLFDNLIATD 321
Query: 325 E-------------------------KALETPQ----------------------INSTN 337
E + + PQ + +
Sbjct: 322 ESVEAEDEDVPLDDEDVPLDDEDVPLEVEDVPQEDESDEESNDDQLGDDFNHDQKVPEST 381
Query: 338 NRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLRE 397
N+ R++D GVSRG+DF V V+N DFP + YIHR GRTARG GTALS VS
Sbjct: 382 NKSRQQDALYGVSRGVDFSGVKFVVNVDFPQSARSYIHRIGRTARGNECGTALSIVS--- 438
Query: 398 QDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAW 457
D + L + ++Q L+ N+ + P F+L E+ F YR +D
Sbjct: 439 SDCQKEAKTLDKLQAKQQPLITPSNDLIKQP--------APLSFDLHEIDRFRYRVEDVQ 490
Query: 458 R-------------------------SNYFEDNPTDLETLRHDKALYTVRIQSHLADVPD 492
R +++FE NP DL L+HDK + RIQ HLA +PD
Sbjct: 491 RAVTRIAVREAQLADIKKEILNSEKLASHFEANPRDLNVLQHDKTIGKARIQPHLATIPD 550
Query: 493 YIVPPALK 500
Y+VP L+
Sbjct: 551 YLVPIGLQ 558
>gi|322786868|gb|EFZ13135.1| hypothetical protein SINV_13157 [Solenopsis invicta]
Length = 243
Score = 301 bits (771), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 152/243 (62%), Positives = 191/243 (78%), Gaps = 8/243 (3%)
Query: 32 AIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQE 91
AI KLGW+EPTLIQE+AIPL+L+ KD+L+RARTGSGKT AFAIP+IQKI++ K+T + QE
Sbjct: 1 AITKLGWMEPTLIQEKAIPLLLEGKDLLIRARTGSGKTAAFAIPLIQKILSNKRTQEKQE 60
Query: 92 TKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATP 151
K L+++PSKELC Q++ I LT+KC R+V+ VD+S Q D + Q+ LL E PDIVV TP
Sbjct: 61 IKGLIIAPSKELCKQIYHVILSLTIKCCREVRTVDLSSQTDFNAQKLLLSEMPDIVVVTP 120
Query: 152 ARALAHLKAKTLDLKSSLEIVIIDEADLV--------FSFGYEDDMKAVLKFLPKLYQAI 203
+R L HLK K L LK SL+ +IIDEADLV FSFGYE D+KAVL +LP YQA+
Sbjct: 121 SRLLQHLKTKNLMLKRSLDTLIIDEADLVRIYIIKFLFSFGYEKDLKAVLTYLPTAYQAV 180
Query: 204 LASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLN 263
LASATLSEDV +LK LIL NP ILKL+EP +AP +QLAHY + A+E++KA ILY LLKL+
Sbjct: 181 LASATLSEDVQTLKKLILHNPAILKLKEPPLAPPTQLAHYTLAAEENDKAAILYALLKLH 240
Query: 264 LVQ 266
L++
Sbjct: 241 LIR 243
>gi|392565268|gb|EIW58445.1| DEAD-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 649
Score = 301 bits (770), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 148/303 (48%), Positives = 216/303 (71%), Gaps = 9/303 (2%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+A +G+ PTL+Q +AIPL L+N+D+L RARTGSGKT A+ IP++QK++N K +
Sbjct: 25 LRALADMGFARPTLVQTKAIPLALENRDILARARTGSGKTAAYCIPVVQKVLNTKGNIAI 84
Query: 90 -----QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERP 144
Q T+AL+L P++EL Q+ +++ L C +V ++S +Q+ LL + P
Sbjct: 85 DDPKRQATRALILVPTRELAEQVSAHLRSLLTYCEDEVSVANVSSGTTTHLQKTLLSDNP 144
Query: 145 DIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLK--FLPKLYQA 202
D+V+ATP+RALA L+AKT+ L +LE ++IDEADL+ S+G+++D++ + FLPK++Q+
Sbjct: 145 DVVIATPSRALALLQAKTMSL-DALESLVIDEADLILSYGHDEDVRQIFSGGFLPKVFQS 203
Query: 203 ILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKL 262
L SAT++EDV +LK L LR+PVILKLEE + L Y + E +K + Y +LKL
Sbjct: 204 FLMSATMTEDVEALKGLALRSPVILKLEEDE-DEAANLTQYSVRCSEVDKFLLTYVILKL 262
Query: 263 NLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIA 322
L++GK I+FVN VD+CY+LKL+LEQF I +CVLNSELP +R H V +FN+G+YD IIA
Sbjct: 263 RLIKGKCILFVNDVDRCYRLKLFLEQFSIKSCVLNSELPLNSRYHTVQEFNKGVYDYIIA 322
Query: 323 SDE 325
SDE
Sbjct: 323 SDE 325
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 104/199 (52%), Gaps = 36/199 (18%)
Query: 330 TPQINST----NNRKRKR---DKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTAR 382
TP+ +S+ N RKR++ D E GVSRG+DF VS VINFD P + Y HR GRTAR
Sbjct: 387 TPEPSSSKSKANKRKRRKGASDAEYGVSRGVDFVDVSCVINFDLPTSSRAYTHRVGRTAR 446
Query: 383 GKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFN 442
G ALSFV +EQ N +LR++++ + + +K YQF+
Sbjct: 447 AGRTGMALSFVVPKEQWGRNKVVGGVESALRDEEIFARIEREQAARGSQ----LKEYQFD 502
Query: 443 LDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKA 477
+ +V+ F YR +DA R+ +FEDNP DLE LRHDK
Sbjct: 503 MKQVEAFRYRMEDALRAVTRSAIKEARIKELKTEILNSDKLKAHFEDNPLDLEYLRHDKP 562
Query: 478 LYTVRIQSHLADVPDYIVP 496
L+ R+QSH+ +P Y++P
Sbjct: 563 LHPTRVQSHMKHIPKYLLP 581
>gi|389745435|gb|EIM86616.1| DEAD-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 666
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 154/320 (48%), Positives = 223/320 (69%), Gaps = 14/320 (4%)
Query: 20 PFTFTLFC-----IPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAI 74
P TF F + L+A+A LG+ PTL+Q++AIPL L+N+DVL RARTGSGKT A+ I
Sbjct: 10 PQTFAAFSHIISPLLLRALADLGFARPTLVQQKAIPLALENRDVLARARTGSGKTAAYCI 69
Query: 75 PMIQKIINLKQTAQV-----QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISE 129
P++QKI+N K Q T+ALVL P+KEL Q+ +++ L C DV +++
Sbjct: 70 PLVQKILNAKANLGAGDEARQATRALVLVPTKELSEQVSTHLKGLIKYCEGDVIISNVAS 129
Query: 130 QVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDM 189
+Q+ LL E+PD+VV TP++ LA L+AK+L L +LE ++IDEADL+FS+G+++D+
Sbjct: 130 GTTTHLQKSLLAEKPDVVVGTPSKLLALLQAKSLQL-GALESLVIDEADLIFSYGHDEDV 188
Query: 190 KAVLK--FLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILA 247
+ +L +LPK++Q+ L SAT++EDV +LK L+LR+P IL+LEE + L+ Y +
Sbjct: 189 RQILSNGYLPKVFQSFLMSATMTEDVETLKGLVLRSPAILRLEEDE-DEAANLSQYSVKC 247
Query: 248 QEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCH 307
E +K ++Y +LKL L++GK IIFVN VD+ Y+LKL+LEQF I +CVLNSELP +R H
Sbjct: 248 SEVDKFLLVYVILKLKLIKGKCIIFVNDVDRSYRLKLFLEQFSIKSCVLNSELPLNSRYH 307
Query: 308 AVYQFNQGLYDVIIASDEKA 327
V +FN+G+YD IIA+DE
Sbjct: 308 VVQEFNKGVYDYIIATDESG 327
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 90/178 (50%), Gaps = 29/178 (16%)
Query: 344 DKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND 403
D E GV+RGIDF V+ V+NFD P + Y HR GRTAR G +LSF+ +
Sbjct: 417 DSEYGVTRGIDFIDVACVLNFDLPPSSRSYTHRVGRTARAGRSGMSLSFIVPESE--FGK 474
Query: 404 GTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS---- 459
+ V+ E+D + V E + ++ Y+F++ +V+ F YR +DA R+
Sbjct: 475 NKVVGGVAGTERDEV--VWERIEREQGARGSKVREYKFDMKQVEAFRYRMEDALRAVTRS 532
Query: 460 ---------------------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVP 496
+FEDNP DLE LRHDK L+ R+QSH+ VP Y++P
Sbjct: 533 AIREARVKELKQEILNSDKLKAHFEDNPLDLEFLRHDKPLHPTRVQSHMKHVPKYLLP 590
>gi|302502050|ref|XP_003013016.1| hypothetical protein ARB_00560 [Arthroderma benhamiae CBS 112371]
gi|291176578|gb|EFE32376.1| hypothetical protein ARB_00560 [Arthroderma benhamiae CBS 112371]
Length = 565
Score = 298 bits (762), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 188/556 (33%), Positives = 274/556 (49%), Gaps = 146/556 (26%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+ + +PTL+Q AIPL L KD+L
Sbjct: 36 LQALTSQKFSKPTLVQAEAIPLALDGKDIL------------------------------ 65
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+NI E + CS+D++ +++++V +VQ LL + PDIV++
Sbjct: 66 -------------------ENIAEESEFCSKDIRSGNLTQKVSDAVQRALLADLPDIVIS 106
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TPARA+ ++ L L ++ V+IDEADLV S+GYE DM+ + K +P+ Q L SATL
Sbjct: 107 TPARAIVNVNNSALAL-DNISQVVIDEADLVLSYGYEQDMQNLAKAIPRGVQTFLMSATL 165
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+ +V +LK L R+P ILKLEE A + ++ + + ED+K + Y + KL LV+GK
Sbjct: 166 TSEVDTLKGLFCRSPAILKLEE-AEDEGAGISQFAVKCAEDDKFLLTYVIFKLQLVKGKC 224
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
IIFV VD+CY+LKL+LEQF I +C+LNSELPA +R HAV +FN+G+YD+IIA+D++ +
Sbjct: 225 IIFVGDVDRCYRLKLFLEQFGIKSCILNSELPANSRIHAVEEFNKGVYDIIIAADDQEV- 283
Query: 330 TPQINSTNNRKRKRDKES-----------------------------------------G 348
I + K+ ++E G
Sbjct: 284 ---IGKIESNKKPSEREEPITDAATEENKDLSEPEEVEEKAAPSNKNKKRKKSGKEKDYG 340
Query: 349 VSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLRE----------Q 398
+SRGIDFQ V+ V+NFD P + Y HR GRT R G ALSFV E
Sbjct: 341 ISRGIDFQDVACVLNFDLPTTAKSYTHRIGRTGRAGKTGMALSFVVPSELYGKHKPTIFP 400
Query: 399 DLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWR 458
ND + L+ + R+ + +V KPY F+ +++ F YR DA R
Sbjct: 401 PAKNDESVLAKIEKRQAKMGREV---------------KPYHFDKKQIEVFRYRMTDALR 445
Query: 459 S-------------------------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDY 493
+ +FE+NP +L LRHD+ L +VR+QS L +VP+Y
Sbjct: 446 AVTRIAVQEARAKEIRQELVKSEKLKRHFEENPQELRELRHDQELGSVRVQSQLKNVPEY 505
Query: 494 IVPPALKKLARIEDDG 509
++P K ED G
Sbjct: 506 LMPTKGKSSLTSEDIG 521
>gi|449541864|gb|EMD32846.1| hypothetical protein CERSUDRAFT_108634 [Ceriporiopsis subvermispora
B]
Length = 649
Score = 298 bits (762), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 147/305 (48%), Positives = 217/305 (71%), Gaps = 9/305 (2%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLK----- 84
L+A+A +G+ PTL+Q +AIPL L+N+D+L RARTGSGKT ++ IP++QKI+N K
Sbjct: 25 LRALADMGFARPTLVQTKAIPLALENRDILARARTGSGKTASYCIPVVQKILNAKSNLPE 84
Query: 85 QTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERP 144
+ Q T+ L+L P++EL Q+ +++ L C +DV ++S +Q+ LL + P
Sbjct: 85 EDPARQATRGLILVPTRELAEQVSAHLRGLLAYCDKDVTVANVSGGTTSHLQKVLLSDSP 144
Query: 145 DIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLK--FLPKLYQA 202
DI+VATP+R L+ L++KTL L SS+E ++IDEADL+ S+G+++D++ + +LPK++Q+
Sbjct: 145 DIIVATPSRGLSLLQSKTLSL-SSVESLVIDEADLILSYGHDEDVRQIFGGGYLPKVFQS 203
Query: 203 ILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKL 262
L SAT+++DV +LK L+LRNP ILKLEE + L Y + E +K + Y +LKL
Sbjct: 204 FLMSATMTDDVEALKGLVLRNPAILKLEEDE-DEAANLTQYSVRCSEVDKFLLAYVILKL 262
Query: 263 NLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIA 322
L++GK I+FVN VD+CY+LKL+LEQF I +CVLNSELP +R H V +FN+G+YD IIA
Sbjct: 263 KLIKGKCILFVNDVDRCYRLKLFLEQFSIKSCVLNSELPLNSRYHTVQEFNKGVYDYIIA 322
Query: 323 SDEKA 327
SDE A
Sbjct: 323 SDESA 327
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 90/178 (50%), Gaps = 29/178 (16%)
Query: 344 DKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND 403
D E GVSRG+DF VS VINFD P + Y HR GRTAR G ALSFV RE+ N
Sbjct: 405 DAEYGVSRGVDFIDVSCVINFDLPSSSRAYTHRVGRTARAGRSGMALSFVVPREEWGKNK 464
Query: 404 GTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS---- 459
+ R++ + + + + +K YQF++ +V+ F YR +DA R+
Sbjct: 465 VVGGVESTRRDERVFARIEKEQAARGSQ----MKEYQFDMKQVEAFRYRMEDALRAVTRS 520
Query: 460 ---------------------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVP 496
+FEDNP DL+ LRHDK L+ R+Q H+ VP Y++P
Sbjct: 521 AIKEARIKELKSEILNSDKLKAHFEDNPNDLDYLRHDKPLHPTRVQPHMKHVPKYLLP 578
>gi|393227212|gb|EJD34901.1| P-loop containing nucleoside triphosphate hydrolase protein
[Auricularia delicata TFB-10046 SS5]
Length = 521
Score = 297 bits (761), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 172/477 (36%), Positives = 257/477 (53%), Gaps = 83/477 (17%)
Query: 96 VLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARAL 155
+L P++EL Q+ ++ L C +D+ V+++ S + +L + PDIV++TPARAL
Sbjct: 1 MLVPTRELAEQVSNLLKGLLKYCDKDLTFVNVAAG-STSHLKSILADSPDIVISTPARAL 59
Query: 156 AHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLK--FLPKLYQAILASATLSEDV 213
+ L++K L L + +E ++IDEADL+ S+G+++DMK +L F P +YQ+ L SAT+++DV
Sbjct: 60 SLLQSKVLTL-ALMESLVIDEADLILSYGHDEDMKQILGGGFFPSVYQSYLMSATMTKDV 118
Query: 214 LSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTIIFV 273
+LK L+LR+P IL+LEE + L+ Y + E +K + Y +LKL LV+GK ++FV
Sbjct: 119 ETLKGLVLRSPAILRLEEDEDV-AANLSQYAVRCNEVDKFLLTYVMLKLKLVKGKCLVFV 177
Query: 274 NTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE-------- 325
N VD+CY+LKL+LEQF I +CVLNSELP +R H V +FN+G+YD IIA+DE
Sbjct: 178 NDVDRCYRLKLFLEQFSIKSCVLNSELPLNSRFHIVQEFNKGVYDYIIATDESGEKAEAD 237
Query: 326 -----------------------------------------KALETPQINSTNNRKRKRD 344
+ P + +K+ D
Sbjct: 238 SDAESESEAEAEDEDEADPDMLPTQRPAEGEAPPKKTLKRKRGTPPPPLTQKKRQKKAGD 297
Query: 345 KESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDG 404
+E GVSRG+DF V+ V+NFD P + Y HR GRTAR G AL+FV +++ N
Sbjct: 298 REYGVSRGVDFVDVACVLNFDLPSSARAYTHRVGRTARAGKSGMALAFVVPKDEFGKNKV 357
Query: 405 TALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS----- 459
+ R++ + + E + I Y F++ +V F YR DA R+
Sbjct: 358 VGGVPSTKRDEKVFKRIEEDQAARGSK----IAEYAFDMKQVNSFRYRMDDALRAVTRAA 413
Query: 460 --------------------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVP 496
+FEDNP DLE LRHDKAL+ R+Q H+ VP Y++P
Sbjct: 414 IKEARVKELKSEILNSDKLKAHFEDNPLDLEYLRHDKALHPTRVQPHMKHVPKYLMP 470
>gi|395326974|gb|EJF59378.1| DEAD-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 651
Score = 297 bits (760), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 148/310 (47%), Positives = 218/310 (70%), Gaps = 9/310 (2%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQT--- 86
L+A+A +G+ PTL+Q + IPL L+N+D+L RARTGSGKT A+ IP++QK++N K +
Sbjct: 25 LRALADMGFSRPTLVQSKGIPLALENRDILARARTGSGKTAAYCIPVVQKVLNAKSSISE 84
Query: 87 --AQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERP 144
++ Q T+AL+L P++EL Q+ +++ L C DV + S +Q+ LL + P
Sbjct: 85 EDSRRQATRALILVPTRELAEQVSAHLKSLLTYCDADVAVANASTGTTAHLQKTLLSDNP 144
Query: 145 DIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLK--FLPKLYQA 202
DIV+ATP+RALA L++K L L SLE ++IDEADL+ S+G+++D++ + +LPK++Q+
Sbjct: 145 DIVIATPSRALALLQSKDLSL-GSLESLVIDEADLILSYGHDEDVRQIFGGGYLPKVFQS 203
Query: 203 ILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKL 262
L SAT++EDV +LK L LR+PVILKLE+ + L Y + E +K + Y +LKL
Sbjct: 204 FLMSATMTEDVEALKGLALRSPVILKLEDEE-DEAANLTQYSVRCSEVDKFLLTYVILKL 262
Query: 263 NLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIA 322
L++GK I+FVN VD+CY+LKL+LEQF I +CVLNSELP +R H V +FN+G+YD IIA
Sbjct: 263 KLIKGKCILFVNDVDRCYRLKLFLEQFSIKSCVLNSELPLNSRYHVVQEFNKGVYDYIIA 322
Query: 323 SDEKALETPQ 332
SDE + + Q
Sbjct: 323 SDENSGKAEQ 332
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 73/193 (37%), Positives = 95/193 (49%), Gaps = 32/193 (16%)
Query: 344 DKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND 403
D E GVSRG+DF VS VINFD P + Y HR GRTAR G ALSFV +E N
Sbjct: 410 DAEYGVSRGVDFVDVSCVINFDLPASSRAYTHRVGRTARAGRTGMALSFVVPKELWGKNR 469
Query: 404 GTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS---- 459
+ R++++ V + IK YQF++ +V+ F YR +DA R+
Sbjct: 470 VVGCVESAKRDEEVFARVEREQAARGSQ----IKEYQFDMKQVEAFRYRMEDALRAVTRS 525
Query: 460 ---------------------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVP-- 496
+FEDNP DLE LRHDK L+ R+QSH+ VP Y++P
Sbjct: 526 AIKEARIKELKTEILNSDKLKAHFEDNPLDLEYLRHDKPLHPTRVQSHMKHVPKYLLPRI 585
Query: 497 -PALKKLARIEDD 508
P A +E D
Sbjct: 586 APVPGADAGVESD 598
>gi|308456622|ref|XP_003090738.1| hypothetical protein CRE_04391 [Caenorhabditis remanei]
gi|308260774|gb|EFP04727.1| hypothetical protein CRE_04391 [Caenorhabditis remanei]
Length = 633
Score = 296 bits (757), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 193/545 (35%), Positives = 299/545 (54%), Gaps = 72/545 (13%)
Query: 6 GWLEPTLIQVYFELPF-TFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNKDVLVR 61
G + P + ++ FE TF F + L++I +LGW T +QE I L L+NK+++ R
Sbjct: 74 GLVGPQVDKMDFESEHKTFADFGLDERILKSIGELGWENATQVQESLISLALENKNIMGR 133
Query: 62 ARTGSGKTGAFAIPMIQKIINLKQTAQVQ-ETKALVLSPSKELCNQLHKNIQELTMKCS- 119
ARTGSGKTGAF IP++QK+I +T A+V++P+KEL Q++K +L
Sbjct: 134 ARTGSGKTGAFLIPLVQKLIAESKTNDGSIGPSAVVIAPTKELVTQIYKLFVKLAQALPF 193
Query: 120 -RDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEAD 178
+ + DI+E+ + SV L + +V++TP + L + + S ++ +++DEAD
Sbjct: 194 LQAINLCDINEEEN-SV---WLEDHSHVVISTPGKLLRMCSIRP-EYCSLVQYLVMDEAD 248
Query: 179 LVFSFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVI-LKLEEPAIAPV 237
L+ SFGYE++M + LP YQ ++ SATL +D+ +LK L + PVI +KL E +
Sbjct: 249 LLLSFGYEEEMIKIRSKLPSTYQCVMTSATLKDDMTTLKKLFMTGPVITIKLTEGDLPNS 308
Query: 238 SQLAHYHILAQEDE-KATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVL 296
QL Y + DE + IL + KL L+ G++I+FVN++D+CYKL L L F + +C+L
Sbjct: 309 DQLTQYQLTCGSDEERFAILVAMYKLKLIVGRSILFVNSIDRCYKLMLILRVFGLKSCIL 368
Query: 297 NSELPAKARCHAVYQFNQGLYDVIIASD-------------EKALETPQINSTNNRKRKR 343
NS +PA +RCH + QFN+G Y ++IASD + E + S + +K
Sbjct: 369 NSAMPANSRCHVINQFNEGAYQIVIASDVSDADGSKLKDLEPEGTEQKEKKSKKSGSKKL 428
Query: 344 DKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND 403
DKESGVSRGIDF VSNV+NFDFP YIHR GRTARG N+GTALSF + +E+ +
Sbjct: 429 DKESGVSRGIDFHHVSNVVNFDFPETTDAYIHRVGRTARGFNKGTALSFCTPQERPHL-- 486
Query: 404 GTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDA------- 456
+ + +++N + +++PY+F + E+ F R ++A
Sbjct: 487 -----------ETIQDEINAQMGRK------VLQPYEFRIKELDTFLLRTREALAKCTKG 529
Query: 457 --------------WRS----NYFEDNPTDLETLRHDKALYTVRIQS-HLADVPDYIVPP 497
RS +F N + ++ D ++I S +ADV Y+VP
Sbjct: 530 VIKKARLKEIRQEMMRSANLQTFFAKNEREKLLMQTDCHPVMLKINSPAIADVTPYMVPE 589
Query: 498 ALKKL 502
AL+ +
Sbjct: 590 ALRGM 594
>gi|302653052|ref|XP_003018360.1| hypothetical protein TRV_07630 [Trichophyton verrucosum HKI 0517]
gi|291181997|gb|EFE37715.1| hypothetical protein TRV_07630 [Trichophyton verrucosum HKI 0517]
Length = 565
Score = 295 bits (756), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 188/550 (34%), Positives = 273/550 (49%), Gaps = 138/550 (25%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+ + +PTL+Q AIPL L KD+L
Sbjct: 36 LQALTSQKFSKPTLVQAEAIPLALGGKDIL------------------------------ 65
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+NI E + CS+D++ +++++V +VQ LL + PDIV++
Sbjct: 66 -------------------ENIAEESEFCSKDIRSGNLTQKVSDAVQRALLADLPDIVIS 106
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TPARA+ ++ L L ++ V+IDEADLV S+GYE DM+ + K P+ Q L SATL
Sbjct: 107 TPARAIVNVNNSALAL-DNISQVVIDEADLVLSYGYEQDMQNLAKATPRGVQTFLMSATL 165
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+ +V +LK L RNP ILKLEE A + + + + ED+K + Y + KL LV+GK
Sbjct: 166 TSEVDTLKGLFCRNPAILKLEE-AEDEGAGINQFAVKCAEDDKFLLTYVIFKLQLVKGKC 224
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL- 328
IIFV VD+CY+LKL+LEQF I +C+LNSELPA +R HAV +FN+G+YD+IIA+D++ +
Sbjct: 225 IIFVGDVDRCYRLKLFLEQFGIKSCILNSELPANSRIHAVEEFNKGVYDIIIAADDQEVI 284
Query: 329 ------------ETPQINSTNNRKR------------------------KRDKESGVSRG 352
E P ++ + ++K+ G+SRG
Sbjct: 285 GKIESNKKPSESEEPITDAATEENKDLSEPEEVEEKAAPSNKNKKRKKSGKEKDYGISRG 344
Query: 353 IDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLRE----------QDLMN 402
IDFQ V+ V+NFD P + Y HR GRT R G ALSFV E N
Sbjct: 345 IDFQDVACVLNFDLPTTAKSYTHRIGRTGRAGKTGMALSFVVPSELYGKHKPTIFPPAKN 404
Query: 403 DGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS--- 459
D + L+ + R+ + +V KPY F+ +++ F YR DA R+
Sbjct: 405 DESVLAKIEKRQAKMGREV---------------KPYHFDKKQIEVFRYRMTDALRAVTR 449
Query: 460 ----------------------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPP 497
+FE+NP +L LRHD+ L +VR+QS L +VP+Y++P
Sbjct: 450 IAVQEARAKEIRQELVKSEKLKRHFEENPQELRELRHDQELGSVRVQSQLKNVPEYLMPT 509
Query: 498 ALKKLARIED 507
K ED
Sbjct: 510 KGKSSLTSED 519
>gi|328860912|gb|EGG10017.1| hypothetical protein MELLADRAFT_34088 [Melampsora larici-populina
98AG31]
Length = 640
Score = 295 bits (756), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 192/583 (32%), Positives = 303/583 (51%), Gaps = 97/583 (16%)
Query: 41 PTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETK------- 93
PT +Q IPL L KD+L +RTGSGKT A+AIP+IQ I++L+ ++ +
Sbjct: 44 PTQVQRDFIPLALSGKDILAGSRTGSGKTLAYAIPIIQNILDLRAKKRLNPIEIINFNLN 103
Query: 94 ALVLSPSKELCNQLHKNIQEL--TMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATP 151
A++L P++EL Q+ + L M ++ +++S ++ PD++V+TP
Sbjct: 104 AIILVPTRELSEQVSVTFRSLCNGMGSEAIIEVLNLSAPDASGSKKRNSGSSPDVLVSTP 163
Query: 152 ARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYE-DDMKAVLKF----------LPKLY 200
A+ L+ L++ +L+L S+L +++DEADL+ S+G+ DD+K++L P Y
Sbjct: 164 AKLLSKLRSGSLNL-SNLSFLVLDEADLILSYGHSSDDIKSILSGSGNADGITWRFPNFY 222
Query: 201 QAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHI-LAQEDEKATILYTL 259
Q+ L SAT++E+V LK+L+LR+P IL ++E + + L + I + E +K ++Y +
Sbjct: 223 QSFLMSATMTEEVAQLKNLVLRDPEILMVKETE-SELKNLTQFSIGITNEQDKFLLVYVI 281
Query: 260 LKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDV 319
+L L++GK +IFVN+ DK Y+LKL+LE+F I + VLNSELP +R HAV +FN+G+++
Sbjct: 282 FRLRLIKGKGLIFVNSTDKSYQLKLFLEKFGIRSGVLNSELPFNSRYHAVQEFNRGVFNY 341
Query: 320 IIASDEKA----------------------------LETP----------QINSTNNRKR 341
+IA+DE +ET + S +R
Sbjct: 342 LIATDESGDSRDDEDEQADQSVEEASSLQESKPDAEVETTVSEKSSKKRKRKESAKDRFA 401
Query: 342 KRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLM 401
R ++ GVSRG+DF V VINFD P +CY HR GRTAR G +LSFV
Sbjct: 402 DRSQDYGVSRGVDFVDVGCVINFDIPPSARCYTHRIGRTARAGRTGISLSFV-------- 453
Query: 402 NDGTALSFVSLREQDLMNDVNEY--LMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS 459
+ S +Q + D+N + + + I+ Y+F++ +V+GF YR +D RS
Sbjct: 454 RSTASTSTQKNVDQQVTKDLNTWQRIEEQQRQRGSEIREYKFDMTQVEGFRYRMQDGLRS 513
Query: 460 -------------------------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYI 494
++FE NP DL L+HDK L+ RIQ H+ VP Y+
Sbjct: 514 VTKAAIREARIKEIKNEVMNSEKLKSHFEANPNDLAFLKHDKPLHPTRIQPHMKHVPSYL 573
Query: 495 VPPALKKLARIEDDGDEDVRAEPITDEEYNKQYEEYKKRSKEN 537
V P + +A + +GD P T +K+ K N
Sbjct: 574 V-PKIAPVAINQTEGDTRTICRPETSVVKTSGARYHKEGRKSN 615
>gi|118481211|gb|ABK92556.1| unknown [Populus trichocarpa]
Length = 619
Score = 295 bits (756), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 186/511 (36%), Positives = 282/511 (55%), Gaps = 63/511 (12%)
Query: 40 EPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ-ETKALVLS 98
EPT IQ AIPLILQ KDV+ RA+TGSGKT A+ +P++QK+++ + + + A +L
Sbjct: 62 EPTPIQRAAIPLILQGKDVVARAKTGSGKTLAYLLPLLQKLLSTADSNRKKLSPSAFILV 121
Query: 99 PSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATP---ARAL 155
PS ELC Q++K + L C +K V ++ + S L PDI+V+TP A++L
Sbjct: 122 PSGELCQQVYKEVSSLIDSCKAQLKVVQLTSNMPASDLRNALAGPPDILVSTPSCVAKSL 181
Query: 156 AHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSEDVLS 215
+ K+ + SLEI+++DEADL+ SFGYE+D+KA+ +P+ Q +L SAT S DV
Sbjct: 182 SVGVLKSESINDSLEILVLDEADLLLSFGYEEDLKALTALVPRRCQCLLMSATSSADVDK 241
Query: 216 LKHLILRNPVILKLEE-----PAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTI 270
LK L+L NP +L L E + P + + + + +K + LLKL+LVQ K +
Sbjct: 242 LKKLVLHNPYVLTLPEVEGVKDEVIP-KNVQQFWVSCGDRDKLVHILALLKLDLVQKKVL 300
Query: 271 IFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD------ 324
IF N +D ++LKL+LE+F I + VLN+ELP +R H + +FN GL+D +IA+D
Sbjct: 301 IFTNAIDMSFRLKLFLEKFGIKSAVLNAELPQNSRLHILEEFNAGLFDYLIATDDRETKE 360
Query: 325 -EKALETPQINSTNNR---KRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRT 380
EKA E + ++ K+K D E GV RGIDF+ V VIN+D PL Y+HR GRT
Sbjct: 361 KEKANEGSLAETRKSKKHAKQKLDSEFGVVRGIDFKNVHTVINYDMPLSATGYVHRIGRT 420
Query: 381 ARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQ 440
R + G+++S VS E +++ ++ +L + + + +I PY
Sbjct: 421 GRA-----------------YSTGSSVSLVSPDEMEILEEIKSFLGDDENNESNVISPYP 463
Query: 441 -FNLDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRH 474
+ V+ YRA+D +S +FE NP DL+ L+H
Sbjct: 464 LLTKNAVESLRYRAEDTAKSVTKIAVREARAQDLRNEILNSEKLKAHFEVNPRDLDLLKH 523
Query: 475 DKALYTVRIQSHLADVPDYIVPPALKKLARI 505
DK L HL+DVPDY++ K+ +++
Sbjct: 524 DKVLSKKPPAPHLSDVPDYLLDATTKEASKM 554
>gi|302772787|ref|XP_002969811.1| hypothetical protein SELMODRAFT_440996 [Selaginella moellendorffii]
gi|300162322|gb|EFJ28935.1| hypothetical protein SELMODRAFT_440996 [Selaginella moellendorffii]
Length = 591
Score = 295 bits (755), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 189/508 (37%), Positives = 271/508 (53%), Gaps = 61/508 (12%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AIAK G +PTLIQ+ AIP IL+ KDV+ RA+TGSGKT A+ +PMI K+ L T
Sbjct: 25 LRAIAKRGLPKPTLIQQTAIPRILEGKDVVGRAKTGSGKTFAYLLPMIHKL--LAHTENA 82
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
KALVL P++ELC Q+ ++ L + V ++ + +V + + RP+IVV+
Sbjct: 83 TGLKALVLVPTRELCQQVFDELESLLNFSGGVLTAVQLTTSMSSAVVKGAVTRRPNIVVS 142
Query: 150 TP---ARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
TP A +A LK SL +++DEADL+ S+GYE+D++ ++ +P Q IL S
Sbjct: 143 TPGCVASCIADGTISAPSLKESLATLVLDEADLLLSYGYEEDLQKLVLHVPPRCQCILMS 202
Query: 207 ATLSEDVLSLKHLILRNPVILKLEE------PAIAPVSQLAHYHILAQEDEKATILYTLL 260
AT S DV LK L+L +PV L L E + P S + + + + ++K L TL+
Sbjct: 203 ATTSADVDKLKKLVLHDPVTLTLTEVDGSTKDDVVP-STVQQFMVRCEAEDKLLHLLTLV 261
Query: 261 KLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVI 320
+ L+Q K +IFVN +D +K+KL+LEQF I + VLN+ELP +R H + +FN GL+D +
Sbjct: 262 RFELIQKKALIFVNAIDTSFKIKLFLEQFGIKSAVLNAELPQNSRLHILKEFNLGLFDYM 321
Query: 321 IASDEKA---LETPQINSTNNRKRKR------DKESGVSRGIDFQFVSNVINFDFPLDIQ 371
IA+D+ LET + RK+ D E GV RG+DF+ V V+NFD P +
Sbjct: 322 IATDDGKSDKLETEDQAGGKLKNRKKLKKRIMDAEFGVVRGVDFKNVYTVVNFDLPRTVT 381
Query: 372 CYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHE 431
YIHR GRT R N G A+SFV ++ L++ + DV N E
Sbjct: 382 GYIHRIGRTGRAGNAGVAVSFVCEGDEGLLSS--------------LEDVLSGDSGNAGE 427
Query: 432 DDFIIKPYQFNLDEVKGFEYRAKDAWRS-------------------------NYFEDNP 466
+ P V+ YRA+D R +FEDNP
Sbjct: 428 KRILPFP-TITSGAVESLRYRAEDVARGVTKISIREARAKELKMEILNSERLKAHFEDNP 486
Query: 467 TDLETLRHDKALYTVRIQSHLADVPDYI 494
DL+ L+HDK L + HL VP+Y+
Sbjct: 487 ADLKLLKHDKPLSKRQPPQHLRSVPEYL 514
>gi|302806830|ref|XP_002985146.1| hypothetical protein SELMODRAFT_424270 [Selaginella moellendorffii]
gi|300146974|gb|EFJ13640.1| hypothetical protein SELMODRAFT_424270 [Selaginella moellendorffii]
Length = 578
Score = 295 bits (755), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 189/508 (37%), Positives = 271/508 (53%), Gaps = 61/508 (12%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AIAK G +PTLIQ+ AIP IL+ KDV+ RA+TGSGKT A+ +PMI K+ L T
Sbjct: 25 LRAIAKRGLPKPTLIQQTAIPRILEGKDVVGRAKTGSGKTFAYLLPMIHKL--LAHTENA 82
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
KALVL P++ELC Q+ ++ L + V ++ + +V + + RP+IVV+
Sbjct: 83 TGLKALVLVPTRELCQQVFDELESLLNFSGGVLTAVQLTTSMSSAVVKGAVTRRPNIVVS 142
Query: 150 TP---ARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
TP A +A LK SL +++DEADL+ S+GYE+D++ ++ +P Q IL S
Sbjct: 143 TPGCVASCIADGTISAPSLKESLATLVLDEADLLLSYGYEEDLQKLVLHVPPRCQCILMS 202
Query: 207 ATLSEDVLSLKHLILRNPVILKLEE------PAIAPVSQLAHYHILAQEDEKATILYTLL 260
AT S DV LK L+L +PV L L E + P S + + + + ++K L TL+
Sbjct: 203 ATTSADVDKLKKLVLHDPVTLTLTEVDGSTKDDVVP-STVQQFMVRCEAEDKLLHLLTLV 261
Query: 261 KLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVI 320
+ L+Q K +IFVN +D +K+KL+LEQF I + VLN+ELP +R H + +FN GL+D +
Sbjct: 262 RFELIQKKALIFVNAIDTSFKIKLFLEQFGIKSAVLNAELPQNSRLHILKEFNLGLFDYM 321
Query: 321 IASDEKA---LETPQINSTNNRKRKR------DKESGVSRGIDFQFVSNVINFDFPLDIQ 371
IA+D+ LET + RK+ D E GV RG+DF+ V V+NFD P +
Sbjct: 322 IATDDGKSDKLETEDQAGGKLKNRKKLKKRIMDAEFGVVRGVDFKNVYTVVNFDLPRTVT 381
Query: 372 CYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHE 431
YIHR GRT R N G A+SFV ++ L++ + DV N E
Sbjct: 382 GYIHRIGRTGRAGNAGVAVSFVCEGDEGLLSS--------------LEDVLSGDSGNAGE 427
Query: 432 DDFIIKPYQFNLDEVKGFEYRAKDAWRS-------------------------NYFEDNP 466
+ P V+ YRA+D R +FEDNP
Sbjct: 428 KRILPFP-TITSGAVESLRYRAEDVARGVTKISIREARAKELKMEILNSERLKAHFEDNP 486
Query: 467 TDLETLRHDKALYTVRIQSHLADVPDYI 494
DL+ L+HDK L + HL VP+Y+
Sbjct: 487 ADLKLLKHDKPLSKRQPPQHLRSVPEYL 514
>gi|268534132|ref|XP_002632196.1| Hypothetical protein CBG07062 [Caenorhabditis briggsae]
Length = 634
Score = 295 bits (755), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 187/520 (35%), Positives = 286/520 (55%), Gaps = 71/520 (13%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L++I +LGW + T +QE I L L+NK+++ RARTGSGKTGAF IP++QK+I +T
Sbjct: 100 LKSIGELGWEKCTQVQESLISLALENKNIMGRARTGSGKTGAFLIPLVQKLIAESKTNDG 159
Query: 90 Q-ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEP--LLVERPDI 146
A+V++P+KEL Q++ L +K S+ + + D++ +E L +R +
Sbjct: 160 SVGPSAVVIAPTKELITQVYT----LFVKLSQALPFLQAINLCDINEEESSVWLEDRSHV 215
Query: 147 VVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
VV TP + L + + S + +++DEADL+ SFGYE++M + LP YQ +L S
Sbjct: 216 VVTTPGKLLRMCGLRP-EYCSIVSYLVMDEADLLLSFGYEEEMIKIRSKLPPTYQCVLTS 274
Query: 207 ATLSEDVLSLKHLILRNPVI-LKLEEPAIAPVSQLAHYHILAQEDE-KATILYTLLKLNL 264
ATL +D+ +LK L + PVI +KL E + QL Y + DE + IL + KL L
Sbjct: 275 ATLKDDMTTLKKLFMTGPVITIKLTEGDLPNSDQLTQYQLTCGSDEERFAILVAMFKLKL 334
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
+ G++I+FVN++D+CYKL L L F + +C+LNS +PA +RCH + QFN+G Y ++IASD
Sbjct: 335 IVGRSILFVNSIDRCYKLMLILRVFGLKSCILNSAMPANSRCHVINQFNEGSYQIVIASD 394
Query: 325 -----------------EKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFP 367
E++ E + +K DKESGVSRGIDF VSNV+NFDFP
Sbjct: 395 VFDADGSKLKEELKDATEESTEGKKDKKEKKGGKKLDKESGVSRGIDFHHVSNVVNFDFP 454
Query: 368 LDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMT 427
YIHR GRTARG N+GTALSF + +E+ + + + ++N+ +
Sbjct: 455 ETTDAYIHRVGRTARGFNKGTALSFCTPQERQHL-------------ETIQEEINQQMGR 501
Query: 428 NLHEDDFIIKPYQFNLDEVKGFEYRAKDA--------------------WRS----NYFE 463
+++PY+F + E+ F R ++A RS +F
Sbjct: 502 K------VLQPYEFRIKELDTFLLRTREALSKTKGVIKKARLKEIRQELMRSANLQTFFA 555
Query: 464 DNPTDLETLRHDKALYTVRIQS-HLADVPDYIVPPALKKL 502
N + ++ D ++I S +ADV Y+VP AL+ +
Sbjct: 556 KNEREKLLMQTDCHPVMLKINSPAIADVTSYMVPEALRGM 595
>gi|429858013|gb|ELA32849.1| ATP dependent RNA helicase [Colletotrichum gloeosporioides Nara
gc5]
Length = 577
Score = 293 bits (750), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 177/513 (34%), Positives = 279/513 (54%), Gaps = 77/513 (15%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
+Q +A + +PT +Q++AIPL L KDV+ +A GSGKT A+ +P++ I+ K T
Sbjct: 43 VQGVAAESFKDPTPVQQKAIPLALDGKDVVAKAPCGSGKTAAYVLPVLSSILKRKTTDSS 102
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T A++L P++EL +Q+ K I++ + C++D+ V + +++ +VQ LL PDIV++
Sbjct: 103 PATTAVILVPTRELADQVLKAIEQFSAYCAKDIHAVKLVDKISDAVQRSLLSNFPDIVIS 162
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TPA A ++ L L+ L +++DEADL+ S+GY +D++ + + LPK Q ++ SATL
Sbjct: 163 TPATAWRNILNDALSLEK-LSYLVLDEADLILSYGYNEDLENIARKLPKGVQLLMMSATL 221
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
S DV SL+ + R P +L L++ L+ + + EDEK + + + KL LV+GK
Sbjct: 222 STDVTSLQGIFARKPTVLDLDDEETEG-DNLSQFVVSCAEDEKFLLAFIIFKLKLVKGKC 280
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK-AL 328
+IFVN VD+ Y+LKL+LEQF++ +C+LNSELP +R H + +FN+G+YD+IIASDEK A+
Sbjct: 281 LIFVNDVDRSYRLKLFLEQFQVRSCILNSELPITSRAHVLEEFNRGVYDIIIASDEKSAM 340
Query: 329 ETPQINS--------------------TNNRKRKRDKESGVSRGIDFQFVSNVINFDFPL 368
+ ++ + KRD E GVSRGIDF+ V+
Sbjct: 341 GVEEKDAEEEDGEGEKEKEKEKESKKKNKKKSSKRDVEFGVSRGIDFKNVA--------- 391
Query: 369 DIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTN 428
AG Q ALSF +E + T++ + ++ ++ +
Sbjct: 392 --------AG-------QRMALSFYVPKELYRKHMPTSIE-TAENDEKVLAKIKRQQAKQ 435
Query: 429 LHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS-------------------------NYFE 463
E +KPY F + + F YR DA R+ YFE
Sbjct: 436 GKE----VKPYNFKKEHLDAFRYRLDDALRAVTKVAVREARMRELKQELLKSEKLKRYFE 491
Query: 464 DNPTDLETLRHDKALYTVRIQSHLADVPDYIVP 496
+NPT+L+ LRHD L T R Q HL +P+Y++P
Sbjct: 492 ENPTELQHLRHDGELRTARQQPHLKHIPEYLLP 524
>gi|356535071|ref|XP_003536072.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 16-like [Glycine
max]
Length = 601
Score = 292 bits (747), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 185/510 (36%), Positives = 271/510 (53%), Gaps = 62/510 (12%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+ K +PT IQ AIPLIL+ KDV+ RA+TGSGKT A+ +P++QK+ +
Sbjct: 34 LRALIKKRIEKPTPIQRVAIPLILEGKDVVARAKTGSGKTLAYLLPLLQKLFTANSDRKK 93
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
A VL P++EL Q++ ++ L C +K V ++ + + L PDI+++
Sbjct: 94 LAPNAFVLVPTRELSQQVYAEVKSLVELCRVQLKVVQLNSNMLANDLRAALAGPPDILIS 153
Query: 150 TPARALAHLKAKTL---DLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
TPA L L + +SLE +++DEADL+ S+GYE+D+KA+ +P+ Q +L S
Sbjct: 154 TPACVAKCLSCGVLQAASINASLETLVLDEADLLLSYGYENDIKALTPHVPRSCQCLLMS 213
Query: 207 ATLSEDVLSLKHLILRNPVILKLEEPA-----IAPVSQLAHYHILAQEDEKATILYTLLK 261
AT S DV LK LIL NP IL L E + P + + I +K + +LK
Sbjct: 214 ATSSADVDKLKKLILHNPFILTLPEVGNHKDEVIP-KNVQQFWISCPASDKLLYILAVLK 272
Query: 262 LNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVII 321
L LVQ K +IF NT+D ++LKL+LE+F I + VLN ELP +R H + +FN GL+D +I
Sbjct: 273 LGLVQKKVLIFTNTIDMSFRLKLFLEKFGIRSAVLNPELPQNSRLHILEEFNAGLFDYLI 332
Query: 322 ASD----EKALETPQINSTNNRKRKR------DKESGVSRGIDFQFVSNVINFDFPLDIQ 371
A+D ++ E P+ + +RK ++ D E GV RGIDF+ V VINF+ P +
Sbjct: 333 ATDLSQSKEKDEVPKESIVGSRKSRKHAKIKLDSEFGVVRGIDFKNVYTVINFEMPQSVA 392
Query: 372 CYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEY-LMTNLH 430
Y+HR GRT R N G ++S VS E D + + SFV E N + E+ L+T
Sbjct: 393 GYVHRIGRTGRAYNSGASVSLVSTDEMDTLEE--IRSFVGDDENKGTNSIAEFPLLTK-- 448
Query: 431 EDDFIIKPYQFNLDEVKGFEYRAKDAWRS-------------------------NYFEDN 465
+ V+ YRA+D +S +FE N
Sbjct: 449 -------------NAVESLRYRAEDVAKSVTRIAVRESRAQDLRNEILNSEKLKTHFETN 495
Query: 466 PTDLETLRHDKALYTVRIQSHLADVPDYIV 495
P DL+ L+HDK L HL DVP+Y++
Sbjct: 496 PKDLDLLKHDKILSKNAPPPHLRDVPEYLL 525
>gi|409081610|gb|EKM81969.1| hypothetical protein AGABI1DRAFT_105361 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 654
Score = 291 bits (744), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 151/313 (48%), Positives = 217/313 (69%), Gaps = 16/313 (5%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLIL-QNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQ 88
L+A+A +G+ PTLIQ RAIPL L +++D+L RARTGSGKT A+ +P+IQKI+ K +
Sbjct: 26 LRALADMGFARPTLIQARAIPLALDEHRDILARARTGSGKTAAYCLPIIQKILLRKGKGK 85
Query: 89 -----------VQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQE 137
+ +TKAL+L P++EL Q+ ++ T C +DV ++++ +Q
Sbjct: 86 DKAVEDAGEGALNQTKALILVPTRELAEQVTSFLKGATKYCDKDVVVINVASGTTAHLQR 145
Query: 138 PLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLK--F 195
LL + PD+VVATP+RALA L+AKTL L S+L+ ++IDEADL+ S+G++ D++ + +
Sbjct: 146 LLLSDHPDVVVATPSRALALLQAKTLSL-SALDTLVIDEADLILSYGHDHDIRQIFSGSY 204
Query: 196 LPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATI 255
LPK++Q+ L SAT++EDV LK + LRNP ILKLEE A + L+ Y + E +K +
Sbjct: 205 LPKVHQSFLMSATMTEDVEMLKGITLRNPAILKLEE-AEDEAASLSQYAVQCSEVDKFLL 263
Query: 256 LYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQG 315
Y +LKL LV+GK I+FVN VD+CY+LKL+LEQF I +CVLNSELP +R H V +FN+G
Sbjct: 264 TYVILKLKLVKGKCILFVNDVDRCYRLKLFLEQFSIKSCVLNSELPLNSRYHTVQEFNKG 323
Query: 316 LYDVIIASDEKAL 328
+YD IIA+DE L
Sbjct: 324 VYDYIIATDEGGL 336
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 103/217 (47%), Gaps = 35/217 (16%)
Query: 326 KALETPQINSTNNRKR--KRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARG 383
K E + ST KR K DKE GV+RG+DF V+ V+NFD P + Y HR GRTAR
Sbjct: 408 KQSEDQSVKSTKKSKRANKLDKEYGVTRGVDFVDVACVLNFDLPTSTRSYTHRVGRTARA 467
Query: 384 KNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNL 443
G +LSFV + N + + + + + + IK Y+F++
Sbjct: 468 GRTGMSLSFVIPSSEWGKNKVVGCLPNAQNDPRVFKRIEKQQAARGSQ----IKEYKFDM 523
Query: 444 DEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKAL 478
+V+ F YR +DA RS YFEDNP DLE LRHDKAL
Sbjct: 524 RQVEAFRYRMEDALRSVTRAAIKEARIKELKNELLNSDKLKAYFEDNPLDLEHLRHDKAL 583
Query: 479 YTVRIQSHLADVPDYIVPPALKKLARIEDDGDEDVRA 515
R+Q H+ +P Y++P K+A ++ D + A
Sbjct: 584 RPARVQPHMKHIPKYLLP----KMASVQAGEDSSLVA 616
>gi|426196845|gb|EKV46773.1| hypothetical protein AGABI2DRAFT_178983 [Agaricus bisporus var.
bisporus H97]
Length = 654
Score = 291 bits (744), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 151/313 (48%), Positives = 217/313 (69%), Gaps = 16/313 (5%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLIL-QNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQ 88
L+A+A +G+ PTLIQ RAIPL L +++D+L RARTGSGKT A+ +P+IQKI+ K +
Sbjct: 26 LRALADMGFARPTLIQARAIPLALDEHRDILARARTGSGKTAAYCLPIIQKILLRKGKGK 85
Query: 89 -----------VQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQE 137
+ +TKAL+L P++EL Q+ ++ T C +DV ++++ +Q
Sbjct: 86 DKAVEDAGEGALNQTKALILVPTRELAEQVTSFLKGATKYCDKDVVVINVASGTTAHLQR 145
Query: 138 PLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLK--F 195
LL + PD+VVATP+RALA L+AKTL L S+L+ ++IDEADL+ S+G++ D++ + +
Sbjct: 146 LLLSDHPDVVVATPSRALALLQAKTLSL-SALDTLVIDEADLILSYGHDHDIRQIFSCSY 204
Query: 196 LPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATI 255
LPK++Q+ L SAT++EDV LK + LRNP ILKLEE A + L+ Y + E +K +
Sbjct: 205 LPKVHQSFLMSATMTEDVEMLKGITLRNPAILKLEE-AEDEAASLSQYAVQCSEVDKFLL 263
Query: 256 LYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQG 315
Y +LKL LV+GK I+FVN VD+CY+LKL+LEQF I +CVLNSELP +R H V +FN+G
Sbjct: 264 TYVILKLKLVKGKCILFVNDVDRCYRLKLFLEQFSIKSCVLNSELPLNSRYHTVQEFNKG 323
Query: 316 LYDVIIASDEKAL 328
+YD IIA+DE L
Sbjct: 324 VYDYIIATDEGGL 336
Score = 115 bits (288), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 103/217 (47%), Gaps = 35/217 (16%)
Query: 326 KALETPQINSTNNRKR--KRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARG 383
K E + ST KR K DKE GV+RG+DF V+ V+NFD P + Y HR GRTAR
Sbjct: 408 KQSEDQSVKSTKKSKRANKLDKEYGVTRGVDFVDVACVLNFDLPTSTRSYTHRVGRTARA 467
Query: 384 KNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNL 443
G +LSFV + N + + + + + + IK Y+F++
Sbjct: 468 GRTGMSLSFVIPSSEWGKNKVVGCLPSAQNDPRVFKRIEKQQAARGSQ----IKEYKFDM 523
Query: 444 DEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKAL 478
+V+ F YR +DA RS YFEDNP DLE LRHDKAL
Sbjct: 524 RQVEAFRYRMEDALRSVTRAAIKEARIKELKNELLNSDKLKAYFEDNPLDLEHLRHDKAL 583
Query: 479 YTVRIQSHLADVPDYIVPPALKKLARIEDDGDEDVRA 515
R+Q H+ +P Y++P K+A ++ D + A
Sbjct: 584 RPARVQPHMRHIPKYLLP----KMASVQAGEDSSLVA 616
>gi|312375531|gb|EFR22888.1| hypothetical protein AND_14047 [Anopheles darlingi]
Length = 271
Score = 291 bits (744), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 141/252 (55%), Positives = 189/252 (75%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ IA+LGW+ PTL+QE+AIP +LQ KDVL+RARTGSGKT AFAIP+IQ +++ K + V
Sbjct: 20 LKDIARLGWISPTLVQEKAIPFLLQGKDVLIRARTGSGKTAAFAIPIIQSVLSRKGESAV 79
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ET LV++PS++LC+Q+ K ELT C V+ VD+S + D + LL +RPDIVV+
Sbjct: 80 RETSVLVMAPSQDLCHQIAKVFTELTSSCGPLVRVVDLSSKEDRATYRHLLADRPDIVVS 139
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L TL+++ SL V IDEADL+FSFG+E D++ VLK P ++Q++L SATL
Sbjct: 140 TPGRLRTVLTDGTLNVRESLRCVTIDEADLMFSFGFEKDLREVLKHFPPVHQSVLCSATL 199
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
EDV+SLK LIL NPV+LKLEEP +A SQL HY I A E +KA +LYT+LKL L+QGK
Sbjct: 200 EEDVVSLKKLILHNPVVLKLEEPDLAIGSQLTHYQIEADEMDKAVVLYTILKLKLIQGKC 259
Query: 270 IIFVNTVDKCYK 281
I+FV +V++CY+
Sbjct: 260 IVFVKSVERCYR 271
>gi|297798432|ref|XP_002867100.1| hypothetical protein ARALYDRAFT_491167 [Arabidopsis lyrata subsp.
lyrata]
gi|297312936|gb|EFH43359.1| hypothetical protein ARALYDRAFT_491167 [Arabidopsis lyrata subsp.
lyrata]
Length = 634
Score = 291 bits (744), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 185/521 (35%), Positives = 280/521 (53%), Gaps = 62/521 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++A+ K G +PTLIQ+ AIP IL+ KDV+ RA+TGSGKT A+ +P++QK+ + ++
Sbjct: 60 IRALTKKGIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYLLPLLQKLFSADSGSKK 119
Query: 90 Q-ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
+ A +L PS+ELC+Q++ + L C +K V ++ + S L P+I+V
Sbjct: 120 KLAPSAFILVPSRELCHQVYSEVSSLIELCRVQLKAVQLTSSMSASDMRNALAGLPEILV 179
Query: 149 ATPARALAHLKAKTLD---LKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILA 205
+TPA A L+ + SL I+++DEADL+ S+GYED++++V +P+ Q +L
Sbjct: 180 STPACIPKCFAAGVLEPTAVSESLAILVLDEADLLLSYGYEDNLRSVTSIIPRRCQCLLM 239
Query: 206 SATLSEDVLSLKHLILRNPVILKLEEPAI---APVSQLAHYHILAQEDEKATILYTLLKL 262
SAT S DV LK LIL NP++L L E A S + + I +K + LLKL
Sbjct: 240 SATTSSDVEKLKKLILHNPIVLTLTEENDKDEAVPSNVQQFWISCSAQDKLLHILALLKL 299
Query: 263 NLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIA 322
+VQ K +IF+NT+D ++LKL+LE+F I + +LN ELP +R H + QFN GL+D +IA
Sbjct: 300 EVVQKKILIFINTIDMGFRLKLFLEKFGIKSAILNGELPQNSRLHILEQFNAGLFDYLIA 359
Query: 323 SDEKALETPQINSTNN------------RKRKRDKESGVSRGIDFQFVSNVINFDFPLDI 370
+D+ + Q K K D E GV RGIDF+ V VINFD P +
Sbjct: 360 TDDNSQTKKQKEEAKGEENKENNRNNKRSKPKLDAEFGVVRGIDFKKVHTVINFDMPQSV 419
Query: 371 QCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLH 430
YIHR GRT R + G+++S VS E + D+ +L ++ +
Sbjct: 420 TGYIHRIGRTGRA-----------------YSSGSSVSLVSPDEMEGFEDIKSFLASDKN 462
Query: 431 EDDFIIKPYQ-FNLDEVKGFEYRAKDAWRS-------------------------NYFED 464
+D II P+ + V+ YRA+D +S +FE
Sbjct: 463 KDSDIITPFPLLTENAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEIINSEKLKAHFEA 522
Query: 465 NPTDLETLRHDKALYTVRIQSHLADVPDYIVPPALKKLARI 505
NP DL+ LRHDK L HL D+P+Y+V P ++ +++
Sbjct: 523 NPRDLDLLRHDKPLSKTAPAPHLKDIPEYLVDPKTQEASKM 563
>gi|15236218|ref|NP_195217.1| DEAD-box ATP-dependent RNA helicase 16 [Arabidopsis thaliana]
gi|75337761|sp|Q9SW44.1|RH16_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 16
gi|5123708|emb|CAB45452.1| RNA helicase (RH16) [Arabidopsis thaliana]
gi|7270442|emb|CAB80208.1| RNA helicase (RH16) [Arabidopsis thaliana]
gi|27754373|gb|AAO22635.1| putative DEAD/DEAH box RNA helicase protein [Arabidopsis thaliana]
gi|28394057|gb|AAO42436.1| putative DEAD/DEAH box RNA helicase protein [Arabidopsis thaliana]
gi|332661036|gb|AEE86436.1| DEAD-box ATP-dependent RNA helicase 16 [Arabidopsis thaliana]
Length = 626
Score = 284 bits (727), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 182/511 (35%), Positives = 272/511 (53%), Gaps = 62/511 (12%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++A+ K G +PTLIQ+ AIP IL+ KDV+ RA+TGSGKT A+ +P++QK+ + ++
Sbjct: 58 IRALTKKGIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKK 117
Query: 90 Q-ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
+ A +L PS+ELC Q++ + L C +K V ++ + S L P+I+V
Sbjct: 118 KLAPSAFILVPSRELCQQVYTEVSSLIELCRVQLKAVQLTSSMSASDMRNALAGLPEILV 177
Query: 149 ATPARALAHLKAKTLD---LKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILA 205
+TPA A L+ + SL I+++DEADL+ S+GYED++++V +P+ Q +L
Sbjct: 178 STPACIPKCFAAGVLEPTAVSESLSILVLDEADLLLSYGYEDNLRSVTSIIPRRCQCLLM 237
Query: 206 SATLSEDVLSLKHLILRNPVILKLEE---PAIAPVSQLAHYHILAQEDEKATILYTLLKL 262
SAT S DV LK LIL NP++L L E A S + + I +K + LLKL
Sbjct: 238 SATTSSDVEKLKKLILHNPIVLTLTEDNDKEEAVPSNVQQFWISCSAQDKLLHILALLKL 297
Query: 263 NLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIA 322
+VQ K +IF+NT+D ++LKL+LE+F I + +LN ELP +R H + QFN GL+D +IA
Sbjct: 298 EVVQKKILIFINTIDMGFRLKLFLEKFGIKSAILNGELPQNSRLHILEQFNAGLFDYLIA 357
Query: 323 SDEKALETPQINSTNNRKRKR------------DKESGVSRGIDFQFVSNVINFDFPLDI 370
+D+ + Q K D E GV RGIDF+ V VINFD P +
Sbjct: 358 TDDNSQTKKQKEEAKGEANKENKKNNKRSKPKLDAEFGVVRGIDFKKVHTVINFDMPQSV 417
Query: 371 QCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLH 430
YIHR GRT R + G+++S +S E + D+ +L ++ +
Sbjct: 418 TGYIHRIGRTGRA-----------------YSSGSSVSLISPDEMEGFEDIKSFLASDKN 460
Query: 431 EDDFIIKPYQ-FNLDEVKGFEYRAKDAWRS-------------------------NYFED 464
+D II P+ + V+ YRA+D +S +FE
Sbjct: 461 KDIDIITPFPLLTENAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEIINSEKLKAHFEA 520
Query: 465 NPTDLETLRHDKALYTVRIQSHLADVPDYIV 495
NP DL+ LRHDK L HL D+P+Y+V
Sbjct: 521 NPRDLDLLRHDKPLSKTAPAPHLKDIPEYLV 551
>gi|300120597|emb|CBK20151.2| unnamed protein product [Blastocystis hominis]
Length = 568
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 190/555 (34%), Positives = 302/555 (54%), Gaps = 103/555 (18%)
Query: 36 LGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKAL 95
+G++ PTL+QE++IPLIL KDVL++ARTGSGKT A+AIP +QK++++ T KA+
Sbjct: 1 MGYVHPTLVQEQSIPLILSGKDVLIKARTGSGKTVAYAIPTLQKLLSITNTTD--GIKAV 58
Query: 96 VLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARAL 155
+L PSKELC Q ++ + L+ CS + V + Q+ L E D+V++TP L
Sbjct: 59 ILVPSKELCVQTYECFRSLSRYCSNVINVVSL-HLSSADQQKGYLNEYTDVVISTPKMLL 117
Query: 156 AHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSEDVLS 215
HLK + ++ ++ I+DEADL+ S+GY++DM V++ +P Q I+ SATL+E+V
Sbjct: 118 NHLKLYSDNILKNIHTFIVDEADLLLSYGYKEDMNKVVERIPATCQNIILSATLNEEVSL 177
Query: 216 LKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTIIFVNT 275
LK +L N V +KLEE + + L + I E++KA +LY LL+L++++GK IIFV++
Sbjct: 178 LKQKLLHNCVTVKLEEENTSERNDLNEFFIEVSEEKKALLLYALLRLHILKGKVIIFVDS 237
Query: 276 VDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK-ALETPQ-- 332
++ Y L ++LE+F + + VLN+ELPA +R + ++QFN+G+YD +IA+DE A P+
Sbjct: 238 LNFGYFLSIFLERFSMKSVVLNNELPALSRNNIIHQFNRGMYDYLIATDEGLAQSIPENS 297
Query: 333 ------INSTNNRK----------RKRDKESGV--------------------------- 349
NS N K ++D++S +
Sbjct: 298 EKEENGGNSGTNAKEDAELLGDSENEKDEDSEIEKDVDSEIEKDDSDDFDLEDSSEPEKE 357
Query: 350 -----------SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQ 398
SRGIDF+ V+ VIN+ P + Y+HR GRTAR N GT LSF+
Sbjct: 358 TEETQNDEYNVSRGIDFENVAAVINYSMPASVSHYVHRIGRTARAGNLGTPLSFIVP--- 414
Query: 399 DLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDF-IIKPYQFNLDEVKGFEYRA---- 453
S ++Q ++ ++ +Y N D + + F++ +++ F YR
Sbjct: 415 -----------TSDKDQRILAEIQKY---NPPRDGHPVPQRLPFDISQIESFSYRVEGVK 460
Query: 454 -----------------KDAWRSN----YFEDNPTDLETLRHDKALYTVRIQSHLADVPD 492
K+A S+ +FEDNP +LE L+H + VR ++L D+PD
Sbjct: 461 RGITPNLIRNTRMMQLRKEALNSSKLKMHFEDNPHELELLQHGLSKQLVRPIAYLRDIPD 520
Query: 493 YIVPPALKKLARIED 507
Y++P ALK + E+
Sbjct: 521 YLIPDALKPKSNPEE 535
>gi|328874326|gb|EGG22691.1| putative RNA helicase [Dictyostelium fasciculatum]
Length = 712
Score = 281 bits (720), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 140/312 (44%), Positives = 207/312 (66%), Gaps = 9/312 (2%)
Query: 22 TFTLFCIPL---QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQ 78
TF C+ + +A+ K+G+ PTLIQ ++IPL LQ KD+L +ARTGSGKT A+ IP++Q
Sbjct: 27 TFESMCLDMRIIKAVKKIGYEHPTLIQAKSIPLSLQGKDILAKARTGSGKTAAYTIPIVQ 86
Query: 79 KIINLKQTAQVQETK-----ALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDV 133
KI+ KQ ++ +K A++L P+KELC Q+ +N+ ++ C+ + V + + V
Sbjct: 87 KILMAKQNTKIPSSKGAGVKAVILVPTKELCEQVQQNLLQICFYCTHLINVVHLGSEQSV 146
Query: 134 SVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVL 193
Q +L + PDI+++TP R + HLK + + L SLE+++IDEADLV S+GY++D++ +
Sbjct: 147 DEQRGMLRDVPDIIISTPTRLVNHLKNQNIKLDMSLEMLVIDEADLVLSYGYQEDIQTIK 206
Query: 194 KFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKA 253
FLPK+ Q L SATL+ V LK LIL P IL+LEE + + L Y I ++
Sbjct: 207 SFLPKVCQGFLMSATLTPQVDELKKLILHTPAILRLEEDQ-SEKTNLTEYSIKTVSFDRY 265
Query: 254 TILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFN 313
+++TLL+L L+QGK + FVN +CYKLKL+LEQF I VLNSELP +R H + QFN
Sbjct: 266 LLIFTLLRLKLMQGKILFFVNDTFQCYKLKLFLEQFHIRAAVLNSELPINSRHHIILQFN 325
Query: 314 QGLYDVIIASDE 325
+G+YD +IA+DE
Sbjct: 326 KGIYDYLIATDE 337
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 94/184 (51%), Gaps = 47/184 (25%)
Query: 344 DKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND 403
DKE GV+RGIDF+ V VINFDFP + Y+HR GRTARG ++G ALSFV+ R + L+
Sbjct: 472 DKEYGVARGIDFKNVDIVINFDFPRTYKNYVHRVGRTARGNSKGVALSFVTKRNEPLL-- 529
Query: 404 GTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS---- 459
+ + E + +KP++F + ++GF YR +D S
Sbjct: 530 -------------------KKIQRKRAEHGYNVKPFEFKMATIEGFRYRVEDVLNSVTKN 570
Query: 460 ---------------------NYFEDNPTDLETLRHDKALYTVR-IQSHLADVPDYIVPP 497
N+F++NP DLE L+HD L ++ HL +P+Y+VP
Sbjct: 571 TISRARKTELEQEIINSEKLKNHFKENPKDLEILKHDIPLTRKHDLKEHLGYIPEYLVPD 630
Query: 498 ALKK 501
ALKK
Sbjct: 631 ALKK 634
>gi|359496815|ref|XP_002273641.2| PREDICTED: DEAD-box ATP-dependent RNA helicase 16, partial [Vitis
vinifera]
Length = 545
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 183/495 (36%), Positives = 266/495 (53%), Gaps = 60/495 (12%)
Query: 54 QNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQE 113
+ KDV+ RA+TGSGKT A+ +P++QK+ + ++ A VL P++ELC Q++ +
Sbjct: 3 EGKDVVARAKTGSGKTFAYLLPLLQKLFSESESRNKLAPSAFVLVPTRELCQQVYSEVLS 62
Query: 114 LTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKS---SLE 170
L C +K V ++ + S L PDI+V+TP L A L S SLE
Sbjct: 63 LIELCRGQLKVVQLTSSMSPSDLRVALAGPPDILVSTPGCIPKCLSAGVLQAASINESLE 122
Query: 171 IVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLE 230
I+++DEADL+ S+GYEDD+KA+ +P+ Q +L SAT S DV LK LIL NP IL L
Sbjct: 123 ILVLDEADLLLSYGYEDDLKALTAHVPRRCQCLLMSATSSADVEKLKKLILHNPFILTLP 182
Query: 231 EPA-----IAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLY 285
E I P + + I +K + LLKL LVQ K +IF N++D ++LKL+
Sbjct: 183 EVGDGKDEIIP-KNVQQFWISCSARDKLLYILALLKLELVQKKILIFTNSIDMAFRLKLF 241
Query: 286 LEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD-------EKALETPQINSTNN 338
LE+F I + VLN+ELP +R H + +FN GL+D +IA+D E+A E QI +
Sbjct: 242 LEKFGIKSAVLNAELPQNSRLHILEEFNAGLFDYLIATDGSQPKEKEQADEGSQIEPRKS 301
Query: 339 R---KRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSL 395
R K+K D E GV RGIDF+ V VINF+ P + Y+HR GRT R N G ++S VS
Sbjct: 302 RKHSKQKLDSEFGVVRGIDFKNVHTVINFEMPQNAPGYVHRIGRTGRAYNTGASVSLVSP 361
Query: 396 REQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKD 455
E +++ + ++ L +D N+ E +FI + V+ YRA+D
Sbjct: 362 DEMEILEEIKSI---------LGDDENK-------ESNFIAPFPLLTKNAVESLRYRAED 405
Query: 456 AWRS-------------------------NYFEDNPTDLETLRHDKALYTVRIQSHLADV 490
+S +FE N DL+ L+HDK L I +HL DV
Sbjct: 406 VSKSVTKLAVRESRAQDLRNEIVNSEKLKAHFEVNQRDLDLLKHDKVLSKKPIPTHLRDV 465
Query: 491 PDYIVPPALKKLARI 505
PDY++ P ++ ++I
Sbjct: 466 PDYLLDPTTQEASKI 480
>gi|300176507|emb|CBK24172.2| unnamed protein product [Blastocystis hominis]
Length = 565
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 190/549 (34%), Positives = 299/549 (54%), Gaps = 108/549 (19%)
Query: 36 LGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKAL 95
+G++ PTL+QE++IPLIL KDVL++ARTGSGKT A+AIP +QK++++ T KA+
Sbjct: 1 MGYVHPTLVQEQSIPLILSGKDVLIKARTGSGKTVAYAIPTLQKLLSITNTTD--GIKAV 58
Query: 96 VLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARAL 155
+L PSKELC Q ++ + L+ CS + V + Q+ L E D+V++TP L
Sbjct: 59 ILVPSKELCVQTYECFRSLSRYCSNVINVVSL-HLSSADQQKGYLNEYTDVVISTPKMLL 117
Query: 156 AHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSEDVLS 215
HLK + ++ ++ I+DEADL+ S+GY++DM V++ +P Q I+ SATL+E+V
Sbjct: 118 NHLKLYSDNILKNIHTFIVDEADLLLSYGYKEDMNKVVERIPATCQNIILSATLNEEVSL 177
Query: 216 LKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTIIFVNT 275
LK +L N V +KLEE + L + I E++KA +LY LL+L++++GK IIFV++
Sbjct: 178 LKQKLLHNCVTVKLEEEN----TNLNEFFIEVSEEKKALLLYALLRLHILKGKVIIFVDS 233
Query: 276 VDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK-ALETPQ-- 332
++ Y L ++LE+F + + VLN+ELPA +R + ++QFN+G+YD +IA+DE A P+
Sbjct: 234 LNFGYFLSIFLERFSMKSVVLNNELPALSRNNIIHQFNRGMYDYLIATDEGLAQSIPENS 293
Query: 333 ------INSTNNRK----------RKRDKESGV--------------------------- 349
NS N K ++D++S +
Sbjct: 294 EKEENGGNSGTNAKEDAELLGDSENEKDEDSEIEKDVDSEIEKDDSDDFDLEDSSEPEKE 353
Query: 350 -----------SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQ 398
SRGIDF+ V+ VIN+ P + Y+HR GRTAR N GTALSF+
Sbjct: 354 TEETQNDEYNVSRGIDFENVAAVINYSMPASVSHYVHRIGRTARAGNLGTALSFIVP--- 410
Query: 399 DLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDF-IIKPYQFNLDEVKGFEYR----- 452
S ++Q ++ ++ +Y N D + + F++ +++ F YR
Sbjct: 411 -----------TSDKDQRILAEIQKY---NPPRDGHPVPQRLPFDISQIESFSYRRVEGV 456
Query: 453 -----------------AKDAWRSN----YFEDNPTDLETLRHDKALYTVRIQSHLADVP 491
K+A S+ +FEDNP +LE L+H + VR ++L D+P
Sbjct: 457 KRGITPNLIRNTRMMQLRKEALNSSKLKMHFEDNPHELELLQHGLSKQLVRPIAYLRDIP 516
Query: 492 DYIVPPALK 500
DY++P ALK
Sbjct: 517 DYLIPDALK 525
>gi|392589759|gb|EIW79089.1| ATP-dependent RNA helicase dbp9 [Coniophora puteana RWD-64-598 SS2]
Length = 658
Score = 278 bits (711), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 146/310 (47%), Positives = 215/310 (69%), Gaps = 9/310 (2%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQT--- 86
L+A+A +G+ PTL+Q +AIPL L+ +D+L RARTGSGKT A+AIP++QK++N K
Sbjct: 25 LRALADMGFARPTLVQTKAIPLALEGRDILARARTGSGKTAAYAIPVVQKVLNAKSAWAA 84
Query: 87 --AQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERP 144
+ Q T+ +VL P+KEL Q+ ++ L C + V V+ + + +Q ++VE+P
Sbjct: 85 GDERGQLTRVMVLVPTKELAEQVMACLRTLVAYCEKSVVLVNAASGSETQLQRTMMVEKP 144
Query: 145 DIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLK--FLPKLYQA 202
D+VV+TP+RAL L++K L L S +VI DEADL+ S+G+++D++ + +LPK+YQ+
Sbjct: 145 DVVVSTPSRALKLLQSKVLSLSSLESLVI-DEADLILSYGHDEDIRQIFSGGYLPKVYQS 203
Query: 203 ILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKL 262
L SAT+++DV LK L LRNP ILKLEE + + L+ Y + E +K + Y +LKL
Sbjct: 204 FLMSATMTDDVEVLKGLALRNPAILKLEEGSDE-AALLSQYSVKCSEVDKFLLTYVILKL 262
Query: 263 NLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIA 322
L++GK I+FVN VD+CY+LKL+LEQF I +CVLNSELP +R H V +FN+G+YD IIA
Sbjct: 263 RLIKGKCILFVNDVDRCYRLKLFLEQFSIKSCVLNSELPLNSRYHTVQEFNKGVYDYIIA 322
Query: 323 SDEKALETPQ 332
+DE +T Q
Sbjct: 323 TDESNGQTEQ 332
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 78/211 (36%), Positives = 106/211 (50%), Gaps = 39/211 (18%)
Query: 327 ALETPQINSTNNRKRKR-----DKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTA 381
A +PQ +S+ +RKRK DKE GV+RG+DF VS V+NFD P + Y HR GRTA
Sbjct: 402 AATSPQ-SSSKSRKRKNKRHNPDKEYGVTRGVDFVDVSCVLNFDLPASARSYTHRVGRTA 460
Query: 382 RGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQF 441
R G ALSFV RE+ + V D +V + + ++ Y F
Sbjct: 461 RAGRSGMALSFVVPREE--WGKNKVVGCVPSARGD--GEVWARIERDQAARGSKVREYNF 516
Query: 442 NLDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDK 476
++ +V+ F YR +DA RS +FEDNP DLE LRHDK
Sbjct: 517 DMRQVEAFRYRMEDALRSVTRSAIKEARVKELKTEMLNSEKLKAHFEDNPLDLEYLRHDK 576
Query: 477 ALYTVRIQSHLADVPDYIVPPALKKLARIED 507
L+ R+QSH+ VP Y++P K+A + D
Sbjct: 577 PLHPTRVQSHMKHVPKYLLP----KIAPVTD 603
>gi|66813958|ref|XP_641158.1| hypothetical protein DDB_G0280407 [Dictyostelium discoideum AX4]
gi|74997096|sp|Q54VF1.1|DDX56_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx56; AltName:
Full=DEAD box protein 56
gi|60469187|gb|EAL67182.1| hypothetical protein DDB_G0280407 [Dictyostelium discoideum AX4]
Length = 685
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 132/296 (44%), Positives = 207/296 (69%), Gaps = 1/296 (0%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+ K+G+ P+L+Q ++IPL LQ KD+L +ARTGSGKT A++IP+IQK++ K+ + +
Sbjct: 35 LRALKKMGFQNPSLVQSKSIPLSLQGKDILAKARTGSGKTAAYSIPIIQKVLMAKEKSNI 94
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ KA+VL P++ELC Q+ + +++ C + V V + + Q+ LL + PD++V+
Sbjct: 95 KGVKAVVLVPTRELCEQVKNHFNQVSYYCQQLVSVVQLGNDKTLDEQKGLLRDIPDVIVS 154
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + HL+ KT+ L+S+L+I++IDEADLV ++G+++D+ + FLPK+ Q L SATL
Sbjct: 155 TPTRLVQHLENKTIQLQSTLDILVIDEADLVLNYGHQNDINIIKSFLPKVCQCFLMSATL 214
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+++V LK L+L P +LKLEE A + L+ Y I E +K ++++LL+L L+QGK
Sbjct: 215 TKEVEELKKLVLHTPAVLKLEEDK-AIQTNLSEYSIKCAEVDKFLLVFSLLRLRLMQGKI 273
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE 325
+ FVN + CYKLKL+ E+F I VLNSELP +R + QFN+GL+D +IA+DE
Sbjct: 274 LFFVNDTNNCYKLKLFFERFHIKCAVLNSELPINSRHDIILQFNKGLFDYLIATDE 329
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 94/187 (50%), Gaps = 46/187 (24%)
Query: 342 KRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLM 401
K DKE GV+RGIDF+ V V+NFDFP I+ YIHR GRTARG N+G ALSFV+ ++L
Sbjct: 420 KGDKEYGVARGIDFRNVDIVVNFDFPRTIKNYIHRIGRTARGTNKGIALSFVTYHNEEL- 478
Query: 402 NDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS-- 459
L VS D + +KP++F ++ ++GF YR +D R+
Sbjct: 479 -----LKKVSKTRGDA---------------GYNLKPFEFKMNAIEGFRYRVEDVLRTIG 518
Query: 460 -----------------------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVP 496
++F +NP DL L+HD L ++ HL VP+Y++P
Sbjct: 519 IRAIKEAKKTELKQELLNNEKLKSHFSENPQDLLALKHDTTLIKKQVPLHLRVVPEYLLP 578
Query: 497 PALKKLA 503
K A
Sbjct: 579 TQFKNHA 585
>gi|218193250|gb|EEC75677.1| hypothetical protein OsI_12480 [Oryza sativa Indica Group]
Length = 661
Score = 275 bits (702), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 183/521 (35%), Positives = 281/521 (53%), Gaps = 64/521 (12%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ 90
+A+ K G + T IQ AIPLIL+ KDV+ +A+TGSGKT A+ +PM+ +++ L +++
Sbjct: 96 RALRKKGLDKATPIQREAIPLILEGKDVVAKAKTGSGKTFAYLLPMLHELLKLSAEGRIR 155
Query: 91 ET--KALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
++ +L P++ELC Q+H L C+ +K V ++ + + L P+I+V
Sbjct: 156 KSAPNVFILVPTRELCQQVHNEASSLLEFCTSKLKVVQVNASMSDKDIKVALSGPPNILV 215
Query: 149 ATPARALAHLKAKTL----DLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAIL 204
TPA +A +K + +K SL ++I+DEADL+ S+ EDD+KA++ +P+ Q+IL
Sbjct: 216 TTPA-CVASCISKGIIRGSSIKESLSMMILDEADLLLSYRCEDDIKALVPHIPRSCQSIL 274
Query: 205 ASATLSEDVLSLKHLILRNPVILKLEEPAIAP----VSQLAHYHILAQEDEKATILYTLL 260
SAT S D+ L L+L NP IL L E A + + I +K + LL
Sbjct: 275 MSATSSADIEKLTKLLLHNPFILTLTEVGHAKDDLIPKNVQQFWISCDAKDKMLYILVLL 334
Query: 261 KLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVI 320
KL L+Q K +IFVN++D +KL+L+LE+F I + VLN+ELP +R H + FN L+D +
Sbjct: 335 KLELIQKKVLIFVNSIDSAFKLRLFLEKFGIRSSVLNAELPQNSRLHIIQAFNARLFDYL 394
Query: 321 IASDE-KALETPQINSTNNR----KRKR-----DKESGVSRGIDFQFVSNVINFDFPLDI 370
IA+D+ K+ E Q N N + RK+ D E GV RGIDF+ V V+N+D P D
Sbjct: 395 IATDDSKSKEERQANKGNKKDSRVSRKQLQQTLDAEFGVVRGIDFKNVFTVVNYDMPPDP 454
Query: 371 QCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLH 430
YIHR GRT R G ++S VS +E + D ++++ DV +
Sbjct: 455 AGYIHRVGRTGRANKTGASISLVSPKENGIFED----------IENMLKDVE-------N 497
Query: 431 EDDFIIKPYQ-FNLDEVKGFEYRAKDAWRS-------------------------NYFED 464
D I P+ + V+ YRA+D RS +F++
Sbjct: 498 RDTSCISPFPLLTKNAVESLRYRAQDVARSVTTRDIKEARRQDIKNEILNSEKLKAHFDE 557
Query: 465 NPTDLETLRHDKALYTVRIQSHLADVPDYIVPPALKKLARI 505
NP DL+ L+HDK L I +HL DVP+Y++ P K+ + +
Sbjct: 558 NPRDLDLLKHDKLLSNKEIPAHLRDVPEYLIDPTTKEASNV 598
>gi|115455097|ref|NP_001051149.1| Os03g0728800 [Oryza sativa Japonica Group]
gi|75323066|sp|Q6ATJ8.1|RH16_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 16
gi|50428704|gb|AAT77055.1| putative DEAD/DEAH box helicase [Oryza sativa Japonica Group]
gi|108710879|gb|ABF98674.1| DEAD/DEAH box helicase family protein, expressed [Oryza sativa
Japonica Group]
gi|113549620|dbj|BAF13063.1| Os03g0728800 [Oryza sativa Japonica Group]
gi|215695549|dbj|BAG90740.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 670
Score = 275 bits (702), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 182/521 (34%), Positives = 281/521 (53%), Gaps = 64/521 (12%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ 90
+A+ K G + T IQ AIPLIL+ KDV+ +A+TGSGKT A+ +PM+ +++ L +++
Sbjct: 105 RALRKKGLDKATPIQREAIPLILEGKDVVAKAKTGSGKTFAYLLPMLHELLKLSAEGRIR 164
Query: 91 ET--KALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
++ +L P++ELC Q+H L C+ +K V ++ + + L P+I+V
Sbjct: 165 KSAPNVFILVPTRELCQQVHNEASSLLEFCTSKLKVVQVNASMSDKDIKVALSGPPNILV 224
Query: 149 ATPARALAHLKAKTL----DLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAIL 204
TPA +A +K + +K SL ++I+DEADL+ S+ EDD+KA++ +P+ Q+IL
Sbjct: 225 TTPA-CVASCISKGIIRGSSIKESLSMMILDEADLLLSYRCEDDIKALVPHIPRSCQSIL 283
Query: 205 ASATLSEDVLSLKHLILRNPVILKLEEPAIAP----VSQLAHYHILAQEDEKATILYTLL 260
SAT S D+ L L+L NP IL L E A + + I +K + LL
Sbjct: 284 MSATSSADIEKLTKLLLHNPFILTLTEVGHAKDDLIPKNVQQFWISCDAKDKMLYILVLL 343
Query: 261 KLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVI 320
KL L+Q K +IFVN++D +KL+L+LE+F I + VLN+ELP +R H + FN L+D +
Sbjct: 344 KLELIQKKVLIFVNSIDSAFKLRLFLEKFGIRSSVLNAELPQNSRLHIIQAFNARLFDYL 403
Query: 321 IASDE-KALETPQINSTNNR----KRKR-----DKESGVSRGIDFQFVSNVINFDFPLDI 370
IA+D+ K+ E Q N N + RK+ D E GV RGIDF+ V V+N+D P D
Sbjct: 404 IATDDNKSKEERQANKGNKKDSRVSRKQLQQTLDAEFGVVRGIDFKNVFTVVNYDMPPDP 463
Query: 371 QCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLH 430
Y+HR GRT R G ++S VS +E + D ++++ DV +
Sbjct: 464 AGYVHRVGRTGRANKTGASISLVSPKENGIFED----------IENMLKDVE-------N 506
Query: 431 EDDFIIKPYQ-FNLDEVKGFEYRAKDAWRS-------------------------NYFED 464
D I P+ + V+ YRA+D RS +F++
Sbjct: 507 RDTSCISPFPLLTKNAVESLRYRAQDVARSVTTRDIKEARRQDIKNEILNSEKLKAHFDE 566
Query: 465 NPTDLETLRHDKALYTVRIQSHLADVPDYIVPPALKKLARI 505
NP DL+ L+HDK L I +HL DVP+Y++ P K+ + +
Sbjct: 567 NPRDLDLLKHDKLLSNKEIPAHLRDVPEYLIDPTTKEASNV 607
>gi|222625724|gb|EEE59856.1| hypothetical protein OsJ_12436 [Oryza sativa Japonica Group]
Length = 661
Score = 274 bits (701), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 182/521 (34%), Positives = 281/521 (53%), Gaps = 64/521 (12%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ 90
+A+ K G + T IQ AIPLIL+ KDV+ +A+TGSGKT A+ +PM+ +++ L +++
Sbjct: 96 RALRKKGLDKATPIQREAIPLILEGKDVVAKAKTGSGKTFAYLLPMLHELLKLSAEGRIR 155
Query: 91 ET--KALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
++ +L P++ELC Q+H L C+ +K V ++ + + L P+I+V
Sbjct: 156 KSAPNVFILVPTRELCQQVHNEASSLLEFCTSKLKVVQVNASMSDKDIKVALSGPPNILV 215
Query: 149 ATPARALAHLKAKTL----DLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAIL 204
TPA +A +K + +K SL ++I+DEADL+ S+ EDD+KA++ +P+ Q+IL
Sbjct: 216 TTPA-CVASCISKGIIRGSSIKESLSMMILDEADLLLSYRCEDDIKALVPHIPRSCQSIL 274
Query: 205 ASATLSEDVLSLKHLILRNPVILKLEEPAIAP----VSQLAHYHILAQEDEKATILYTLL 260
SAT S D+ L L+L NP IL L E A + + I +K + LL
Sbjct: 275 MSATSSADIEKLTKLLLHNPFILTLTEVGHAKDDLIPKNVQQFWISCDAKDKMLYILVLL 334
Query: 261 KLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVI 320
KL L+Q K +IFVN++D +KL+L+LE+F I + VLN+ELP +R H + FN L+D +
Sbjct: 335 KLELIQKKVLIFVNSIDSAFKLRLFLEKFGIRSSVLNAELPQNSRLHIIQAFNARLFDYL 394
Query: 321 IASDE-KALETPQINSTNNR----KRKR-----DKESGVSRGIDFQFVSNVINFDFPLDI 370
IA+D+ K+ E Q N N + RK+ D E GV RGIDF+ V V+N+D P D
Sbjct: 395 IATDDNKSKEERQANKGNKKDSRVSRKQLQQTLDAEFGVVRGIDFKNVFTVVNYDMPPDP 454
Query: 371 QCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLH 430
Y+HR GRT R G ++S VS +E + D ++++ DV +
Sbjct: 455 AGYVHRVGRTGRANKTGASISLVSPKENGIFED----------IENMLKDVE-------N 497
Query: 431 EDDFIIKPYQ-FNLDEVKGFEYRAKDAWRS-------------------------NYFED 464
D I P+ + V+ YRA+D RS +F++
Sbjct: 498 RDTSCISPFPLLTKNAVESLRYRAQDVARSVTTRDIKEARRQDIKNEILNSEKLKAHFDE 557
Query: 465 NPTDLETLRHDKALYTVRIQSHLADVPDYIVPPALKKLARI 505
NP DL+ L+HDK L I +HL DVP+Y++ P K+ + +
Sbjct: 558 NPRDLDLLKHDKLLSNKEIPAHLRDVPEYLIDPTTKEASNV 598
>gi|402589981|gb|EJW83912.1| DEAD/DEAH box helicase [Wuchereria bancrofti]
Length = 452
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 164/440 (37%), Positives = 243/440 (55%), Gaps = 80/440 (18%)
Query: 130 QVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDM 189
++DV+ + L+++PD VV+TP R L LK K S++ V++DEADL+ SFGY ++M
Sbjct: 7 ELDVNTDDDWLLKKPDFVVSTPGRLLHALK-KYGKPCESVKHVVLDEADLLLSFGYAEEM 65
Query: 190 KAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVIL-KLEEPAIAPVSQLAHYHILAQ 248
+ + FLP +Q I SAT++E+V +LK L + ++L KL+E + QL+ YHI Q
Sbjct: 66 RLIKDFLPTHHQTIFTSATMTENVEALKELYVTGSIVLMKLKEGQLPSSDQLSQYHISCQ 125
Query: 249 -EDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCH 307
E+E+ I LLKL L+ GK+IIFV D+CY+L L+L+ F I +C+LN+++P +RCH
Sbjct: 126 NEEERFAIFLALLKLKLIVGKSIIFVKDTDRCYQLGLFLQAFNIRSCILNAQMPINSRCH 185
Query: 308 AVYQFNQGLYDVIIASD--EKALETPQINSTNNRK---------------------RKRD 344
V QFN+G Y +IASD + + E+ + + + + D
Sbjct: 186 VVEQFNEGRYSYVIASDINDVSGESQAVMKDEDDEDVCHNFIFRYLKRKKIHKKKRKHID 245
Query: 345 KESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDG 404
KESGVSRGIDF V+NVINFDFP + YIHR GRTARG N+G ALSF S +E+ +
Sbjct: 246 KESGVSRGIDFHHVANVINFDFPTSLNSYIHRVGRTARGWNKGNALSFASPQEKPFL--- 302
Query: 405 TALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDA-------- 456
+++ ++N L I PY+ + E++ F RA++
Sbjct: 303 ----------EEVQEEINAQLGHR------AITPYEVRIKELESFVLRAREVLAACTKTA 346
Query: 457 -------------WRSN----YFEDNPTDLETLRHDKALYTVRIQS-HLADVPDYIVPPA 498
RS YF NP + L HDK L++V + S +ADVPDY+VPP+
Sbjct: 347 IREARLAEIRAEILRSKRLEAYFAKNPRERAALEHDKKLFSVNLHSPAIADVPDYMVPPS 406
Query: 499 LKKLARIEDDGDEDVRAEPI 518
L+ L + R+EP+
Sbjct: 407 LRGL---------NYRSEPV 417
>gi|407921724|gb|EKG14864.1| Helicase [Macrophomina phaseolina MS6]
Length = 640
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 140/320 (43%), Positives = 205/320 (64%), Gaps = 8/320 (2%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQ- 88
LQ I + + PT +Q +AIPL L+ KD+L R++TGSGKT A+ +P++ I+ K +
Sbjct: 42 LQGIVRQRFATPTPVQAQAIPLALEGKDILARSKTGSGKTAAYVLPILHSILKRKADSSF 101
Query: 89 VQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
Q T AL+L P++EL Q+ K ++ C +DV+ +I+ + D +VQ L + PDIVV
Sbjct: 102 TQCTSALILVPTRELAGQVTKTVEAFAAFCGQDVRVANITMREDDAVQRARLADSPDIVV 161
Query: 149 ATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
ATP R +L A L L L ++IDEADLV S+GY+DD++++ K +PK Q L SAT
Sbjct: 162 ATPGRTCVNLNAGALSL-DRLAHLVIDEADLVLSYGYDDDLQSISKSIPKGTQTFLMSAT 220
Query: 209 LSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGK 268
LS DV LK L R+PV+L+L+E +++ Y + EDEK ++Y + L LV+GK
Sbjct: 221 LSSDVEDLKGLFCRDPVLLELDEKE-EDKGKVSQYIVKCAEDEKFLLMYAIFMLKLVKGK 279
Query: 269 TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL 328
I+FV +D+CY+LKL+LEQF I +CVLNSELP +R H V +FN+ +YD+IIASDE
Sbjct: 280 VIVFVGDIDRCYRLKLFLEQFGIKSCVLNSELPVNSRIHVVEEFNRNVYDIIIASDEH-- 337
Query: 329 ETPQINSTNNRKRKRDKESG 348
++ ++K KR + G
Sbjct: 338 ---EVLGDEDKKNKRKSKGG 354
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 92/181 (50%), Gaps = 30/181 (16%)
Query: 346 ESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGT 405
E G++RGIDFQ VS V+NFD P + Y HR GRTAR G A+SFV +++ + T
Sbjct: 409 EYGIARGIDFQNVSLVLNFDLPTSSKSYTHRIGRTARAGQNGMAISFVIPKDKFRKHKPT 468
Query: 406 ALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS------ 459
++ E+ L +M + + ++PY F++ ++GF YR DA R+
Sbjct: 469 SIESCKNDEEVLAK-----IMKSQEKRGNKVQPYHFDMKALEGFRYRLADALRAVTRIAV 523
Query: 460 -------------------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPPALK 500
+FE+NP +L+ LRHD + T R Q HL VP+Y++P K
Sbjct: 524 REARARELRQELLKSEKLKRHFEENPQELQHLRHDAEVRTARQQPHLKHVPEYLLPAGGK 583
Query: 501 K 501
K
Sbjct: 584 K 584
>gi|298707633|emb|CBJ30201.1| DEAD box helicase [Ectocarpus siliculosus]
Length = 818
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 133/299 (44%), Positives = 209/299 (69%), Gaps = 6/299 (2%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQT--A 87
++A+AK+G++ PTL+Q + IPL L+ KD+LVRARTGSGKT AFA+P++QKI+ K+
Sbjct: 59 VKAVAKMGFVYPTLVQNKCIPLALRGKDLLVRARTGSGKTAAFALPLLQKILRRKEAEPG 118
Query: 88 QVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
+ +A+VL P++ELC+Q ++ EL C V + + + +++ QE L ++ D++
Sbjct: 119 LPRGVRAVVLVPTRELCDQARAHLSELMHYCRDQVSLLALVDD-NMAAQEAALRDKADVL 177
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
VATPAR +AHLKA ++LK ++E +++DEADLV SFGY +D++AV K LPK+ Q L SA
Sbjct: 178 VATPARLVAHLKAGNVELKDTVETLVVDEADLVLSFGYSEDIRAVTKRLPKICQGFLMSA 237
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAI-APVSQLAHYHILAQEDEKATILYTLLKLNLVQ 266
TLS ++ LK ++L +P +LKLEE A +SQ Y LA + +K +++ +KL L++
Sbjct: 238 TLSAELEDLKRVVLHSPAVLKLEEGARDGRLSQF--YLSLADKGDKFLVVFAFIKLGLLE 295
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE 325
GK + FVN + Y+LKL+LEQF + + VLN+ELP +R H + +FN+G++D +I +D+
Sbjct: 296 GKGLFFVNETESSYRLKLFLEQFHVRSAVLNAELPLNSRLHILQEFNRGIFDYLIVTDD 354
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/53 (56%), Positives = 34/53 (64%)
Query: 341 RKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFV 393
R D E G +RG+DF+ VS V+N DFP Y HR GRTARG GTALS V
Sbjct: 478 RGEDSEFGAARGVDFRGVSFVLNVDFPPTASSYTHRVGRTARGGASGTALSLV 530
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 26/89 (29%)
Query: 438 PYQFNLDEVKGFEYRAKDAWR-------------------------SNYFEDNPTDLETL 472
P F++ E++ F YR +D + + YF++N DL+ L
Sbjct: 609 PLAFDIREIERFRYRVEDTLKKVTRVSVREARAAELKAEIVNSQKLAGYFKENAGDLKVL 668
Query: 473 RHDKA-LYTVRIQSHLADVPDYIVPPALK 500
RHDK+ L+ +R HL +PDY++PP L+
Sbjct: 669 RHDKSVLHPLRKLDHLKHIPDYLMPPGLQ 697
>gi|281207672|gb|EFA81852.1| putative RNA helicase [Polysphondylium pallidum PN500]
Length = 729
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 138/313 (44%), Positives = 206/313 (65%), Gaps = 7/313 (2%)
Query: 22 TFTLFCIPLQ---AIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQ 78
TF C+ ++ +I K+G+ PTLIQ +AIPL LQ KD+L +ARTGSGKT A+++P++Q
Sbjct: 23 TFESMCLDMRITRSIRKMGFDHPTLIQSKAIPLALQGKDILAKARTGSGKTAAYSVPIVQ 82
Query: 79 KIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEP 138
KI+ K + +A+VL P++ELC Q+ + ++ V V ++ S Q+
Sbjct: 83 KILMSKANNNKKCIRAVVLVPTRELCEQVKNHFLQICFYTQLSV--VQLAGDQSESEQKG 140
Query: 139 LLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPK 198
LL + PDI+++TP R + HLK+ ++ L+SSLE+++IDEADLV S+GY++D+ + +LPK
Sbjct: 141 LLRDIPDIIISTPTRLVNHLKSGSIQLESSLEMLVIDEADLVLSYGYQEDINTIKSYLPK 200
Query: 199 LYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYT 258
+ Q L SATL+ V LK LIL P IL+LE+ S L+ Y I +K ++++
Sbjct: 201 VCQGFLMSATLTAQVEELKKLILHTPAILRLED--TVEKSNLSEYSIRCSNFDKFLLVFS 258
Query: 259 LLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYD 318
LL+L L+QGK + FVN CYKLKL+LE+F I VLNSELP +R H + QFN+G++D
Sbjct: 259 LLRLKLMQGKILFFVNDTSSCYKLKLFLERFHIKAAVLNSELPINSRHHIILQFNKGIFD 318
Query: 319 VIIASDEKALETP 331
+IA+DE +TP
Sbjct: 319 YLIATDESFKQTP 331
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 107/213 (50%), Gaps = 53/213 (24%)
Query: 322 ASDEKALE------TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIH 375
+ DEK +E TP++ T + + D E GVSRGIDF+ V V+NFDFP ++ Y+H
Sbjct: 448 SDDEKEMEDSFFSSTPKVK-TEKKTKLTDTEYGVSRGIDFRNVDIVVNFDFPRTVKNYVH 506
Query: 376 RAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFI 435
R GRTARG N+G ALSF++ DL+++ + E +
Sbjct: 507 RIGRTARGSNKGIALSFITPDNDDLLHE---------------------VQKKRGETGYN 545
Query: 436 IKPYQFNLDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLE 470
+KP++F ++ ++GF YR +D + ++FE NP DLE
Sbjct: 546 LKPFEFKMNAIEGFRYRVEDVLNTVSKNEISAARKKEIELEIINNEKLKSHFEANPKDLE 605
Query: 471 TLRHDKALYTVRIQSHLADVPDYIVPPALKKLA 503
L+HD L +I +L +PDY++P A+K A
Sbjct: 606 ALKHDVPLLKKKIARNLRIIPDYLLPEAMKATA 638
>gi|440300993|gb|ELP93440.1| DEAD box ATP-dependent RNA helicase, putative [Entamoeba invadens
IP1]
Length = 534
Score = 268 bits (686), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 172/530 (32%), Positives = 289/530 (54%), Gaps = 69/530 (13%)
Query: 33 IAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQET 92
I +LG+ PTLIQ + IP+ L+ KD++ ARTG+GKT A+ IP++Q ++ K ++
Sbjct: 26 INRLGYKNPTLIQSQFIPIALEGKDIITEARTGTGKTLAYVIPILQNLLTTK--SEGNYV 83
Query: 93 KALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPA 152
+AL+L+PS+ELC Q+ KN+ + +K + ++++ + Q+ PDIV ATP+
Sbjct: 84 RALILNPSRELCVQV-KNVVDQLLKGFYGISIINVASDTSMISQKGKTRGLPDIVTATPS 142
Query: 153 RALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSED 212
L +LK +L S+L++V+ DE DL+ ++GYE D+ + K LP+ + L SAT+++D
Sbjct: 143 SLLTYLKRTGTNL-STLDMVVYDEVDLMIAYGYEKDITQISKTLPETCKKWLLSATINDD 201
Query: 213 VLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTIIF 272
V ++K L +RN V ++LE+ + Y I ++ +K LY +L+LN+++GK +IF
Sbjct: 202 VETIKKLTIRNAVKIRLEDEG--EKGNITEYSIFCEQKDKILNLYIILRLNMIRGKVLIF 259
Query: 273 VNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQ 332
VN++ + + +K++L++F I + VLNS+ P R + QFN + ++IA+DE +E
Sbjct: 260 VNSIQQAFFVKIFLDRFSIPSVVLNSDFPRDIRTDIINQFNNKQFKILIATDEVTIEKVI 319
Query: 333 INSTNNRKRKRDKES-GVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALS 391
+ + KE+ V+RGIDF V+ V+NFD P+ Y HR GRTARG +GTA++
Sbjct: 320 EEKAKDLDAEEGKENFSVARGIDFVDVATVMNFDCPVSDVSYTHRIGRTARGIKKGTAIT 379
Query: 392 FVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEY 451
FV E + F ++ + + +++ P N F+
Sbjct: 380 FVDKSELE--------QFSEIKTKHTLKT-------------YVVDPVILN-----SFKT 413
Query: 452 RAKDAW-----------RSNYFEDNPTDLETLRHD---KALYTVRI---QSHLADVPDYI 494
R DA R F++ +LETL++ +T ++ Q+HL D+PDY+
Sbjct: 414 RVYDAQNTITKNTCKLARIRDFKEEKMNLETLKNSVGSGVSHTTQLAAAQNHLRDIPDYL 473
Query: 495 VPPALK-KLARIEDDGDEDVRAEPITDEEYNKQYEEYKKRSK---ENERN 540
+P ++ +L RI D E YE YK ++ +NERN
Sbjct: 474 LPKNVRERLGRIVKDKSE---------------YEFYKTKNVPKWKNERN 508
>gi|323455805|gb|EGB11673.1| hypothetical protein AURANDRAFT_52462 [Aureococcus anophagefferens]
Length = 761
Score = 268 bits (684), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 186/537 (34%), Positives = 274/537 (51%), Gaps = 79/537 (14%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ 90
+A+A+L W P+LIQ+ A+P+ +D+L+RARTGSGKT +A+P++ I LK+ A+
Sbjct: 127 RAVAELNWARPSLIQQAALPVAATGRDLLIRARTGSGKTACYALPILDLI--LKKKAETL 184
Query: 91 ETK-------ALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVER 143
E + A+VL P++EL Q ++EL C DV V + + +
Sbjct: 185 EGRREYGGVLAVVLVPTRELVAQAATQLRELAAYCRDDVAIVALRGESAAEDAAQVRSGN 244
Query: 144 PDIVVATPA-------RALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFL 196
D+V TPA RA AH L L+ + +DEADLV SFGY++D+ V + L
Sbjct: 245 ADVVAGTPAAVRDAVERARAHDDHPLLRLRRTCRAYAVDEADLVLSFGYDEDVAFVAREL 304
Query: 197 P----------KLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIA------PVSQL 240
Q L SATL +DVL LK L L+ +KL+E A +QL
Sbjct: 305 GVAGDDAADRADRPQGFLLSATLGDDVLKLKKLALKGAATVKLDERAGVFGGDRDDEAQL 364
Query: 241 AHYHILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSEL 300
A Y++ + +K + Y +LKL L++G+ ++FVN+VD CYKLKL+L+ F I VLN+EL
Sbjct: 365 AQYYVPVAKGDKYLVTYVMLKLALLEGRGVLFVNSVDACYKLKLFLDLFSIRCLVLNAEL 424
Query: 301 PAKARCHAVYQFNQGLYDVIIASDE--KALETPQINSTNNRKR----KRDKES-GVSRGI 353
P +R HA+ +N+GLYD+++A+D +A + P+ +K K+ K++ GV+RGI
Sbjct: 425 PLASRLHAIESYNRGLYDILVATDASVEATDAPEKRKRGQKKATKAPKKSKDAFGVARGI 484
Query: 354 DFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFV-SLREQDLMNDGTALSFVSL 412
DF+ V V+N D P + Y HR GRTAR +GTALS V ++ L G +L
Sbjct: 485 DFRDVKWVLNVDVPATPESYTHRVGRTARAGARGTALSLVPPMKLASLAAGGACAVLAAL 544
Query: 413 REQDLMNDVNEYLMTNLHEDDFIIKPYQFNLD--EVKGFEYRAKDAWRS----------- 459
DV+E L + +P + D + F YR D R
Sbjct: 545 -------DVDE--AAALGAGAHVPQPARLAFDGGACEPFRYRVSDVQRGVTAASVRDARA 595
Query: 460 --------------NYFEDNPTDLETLRHDKALYTVR---IQSHLADVPDYIVPPAL 499
+F DNP DL L+ KA + VR + + + VP Y+VP AL
Sbjct: 596 AELRKEMLDSEALKAHFSDNPDDLAVLQQTKAEHHVRRDLLAATIKTVPSYLVPKAL 652
>gi|302406528|ref|XP_003001100.1| ATP-dependent RNA helicase DBP9 [Verticillium albo-atrum VaMs.102]
gi|261360358|gb|EEY22786.1| ATP-dependent RNA helicase DBP9 [Verticillium albo-atrum VaMs.102]
Length = 423
Score = 268 bits (684), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 135/321 (42%), Positives = 205/321 (63%), Gaps = 25/321 (7%)
Query: 96 VLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARAL 155
+L P++EL +Q+H++I+ L C++D++ V ++++V +VQ LL PDIV++TPARA
Sbjct: 1 MLVPTRELADQVHRSIESLAAFCAKDIQAVKLTDKVSTTVQRALLSANPDIVISTPARAW 60
Query: 156 AHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSEDVLS 215
++ + L L ++L +++DEADLV S+GY++D++ V + LPK Q IL SATL+ +V +
Sbjct: 61 ENVSSSALSL-ANLTHLVLDEADLVLSYGYKEDLQNVARSLPKGVQTILMSATLTPEVDT 119
Query: 216 LKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTIIFVNT 275
+K L RNP +L LE+P A + + + EDEK ++Y + KL L+QGK ++F +
Sbjct: 120 VKGLFCRNPALLDLEQPE-AEGDGITQFVVKCAEDEKFLLIYVIFKLKLIQGKALVFCHD 178
Query: 276 VDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL------- 328
VD+ YKLKLY EQF I +C+LN+ELP +R H V +FN+G+YD++IASD+ +
Sbjct: 179 VDRSYKLKLYFEQFGIRSCILNAELPVNSRLHVVDEFNKGVYDILIASDDNEVVGDEGQE 238
Query: 329 ----------------ETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQC 372
++ + R ++DKE GVSRGIDF+ V+ VINFD P +
Sbjct: 239 DEGEEETTEEPKKETKKSKKKQQQQQRASRKDKEYGVSRGIDFKNVAAVINFDLPTSAKS 298
Query: 373 YIHRAGRTARGKNQGTALSFV 393
Y HR GRTAR +G ALSFV
Sbjct: 299 YTHRIGRTARAGQRGMALSFV 319
>gi|156840672|ref|XP_001643715.1| hypothetical protein Kpol_1009p3 [Vanderwaltozyma polyspora DSM
70294]
gi|156114338|gb|EDO15857.1| hypothetical protein Kpol_1009p3 [Vanderwaltozyma polyspora DSM
70294]
Length = 479
Score = 266 bits (681), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 153/438 (34%), Positives = 249/438 (56%), Gaps = 60/438 (13%)
Query: 114 LTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLK-SSLEIV 172
+ + CS D++ ++IS + SV LL+E+P+I++ATP + + L + L+ +
Sbjct: 1 MILYCSNDIRSLNISSDMPSSVLTSLLLEKPEIIIATPGKLMTLLDTNVESVSLEELKFL 60
Query: 173 IIDEADLVFSFGYEDDMKAVLKFLP--KLYQAILASATLSEDVLSLKHLILRNPVILKLE 230
+IDE DLV +FGY++D+ + ++LP K Q L SATL++D+ LK R P ILK
Sbjct: 61 VIDEVDLVLTFGYKEDLSKIAEYLPLKKNLQTFLMSATLNDDIQELKKEFCRAPAILKFN 120
Query: 231 EPAIAP-VSQLAHYHILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQF 289
+ I+ ++L Y++ E +K + Y + KL L++GKT+IFVN +D+ Y+LKL LEQF
Sbjct: 121 DDEISKDKNKLIQYYVKTSEFDKFLLCYVIFKLGLIKGKTLIFVNNIDRGYRLKLVLEQF 180
Query: 290 KISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE-----------------KALETPQ 332
I +C+LNSELPA +R H V QFN+ +Y ++IA+D+ + E +
Sbjct: 181 GIKSCILNSELPANSRQHIVDQFNKNVYHLLIATDDTEYIKEEDEENDDEIETNSEEQDK 240
Query: 333 INSTNN---------RKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARG 383
+ +N+ K K+DKE GVSRG+DFQ V+ V+NFD P + Y+HR GRTAR
Sbjct: 241 VEDSNDTKDKKGKKASKIKKDKEFGVSRGVDFQNVACVLNFDLPTTAKSYVHRIGRTARA 300
Query: 384 KNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNL 443
GTA+SFV + ++ ++ + R++ +++ + + + ++PY F+
Sbjct: 301 GKTGTAISFV-VPLKEFGKHKPSMYQSTKRDEKILSRI----IKQQSKLGLELQPYSFDT 355
Query: 444 DEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKAL 478
+++GF YR +D +R+ +FE+NP +L++LRHDK L
Sbjct: 356 KQIEGFRYRMEDGFRAVTQVAIREARVKELKDELLASEKLKRHFEENPQELQSLRHDKEL 415
Query: 479 YTVRIQSHLADVPDYIVP 496
+ R+Q HL VPDY++P
Sbjct: 416 HPSRVQQHLKRVPDYLLP 433
>gi|154416022|ref|XP_001581034.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
gi|121915258|gb|EAY20048.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
Length = 522
Score = 265 bits (677), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 160/487 (32%), Positives = 247/487 (50%), Gaps = 72/487 (14%)
Query: 34 AKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETK 93
AK W PT IQ+ AIP LQ KD+L +ARTGSGKT A+ IP++ I L ++ K
Sbjct: 25 AKKLWDRPTPIQQTAIPPALQGKDILAKARTGSGKTAAYIIPIL---IGLSRSPLPLNFK 81
Query: 94 ALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPD-IVVATPA 152
AL+L P++ELC Q+ EL C + + E V + Q+ L P +++ TPA
Sbjct: 82 ALILVPTRELCKQVKSQFDELAHYCR--ITSAHLGEDVSAATQKVTLAANPPAVLIGTPA 139
Query: 153 RALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSED 212
R A +++D +++ +++DEAD F + D++A++ LP Q+ L SATL ++
Sbjct: 140 RVSA---LESMDFFKNVQFLVVDEADQQLGFDHGADIEAIISKLPPTRQSFLMSATLEKN 196
Query: 213 VLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTIIF 272
V L L+L NPV + + E S L HY I ED + +LYTL+++ + + ++F
Sbjct: 197 VQELTKLVLNNPVFVDVTEEQQQ--SLLQHYFINVTEDNRYMVLYTLIQIGRLGKRILLF 254
Query: 273 VNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQ 332
VN++++ +KL L+LE+ I + VLNS+LP +R + FN G DV++A DE +
Sbjct: 255 VNSINRGFKLCLFLERMHIKSSVLNSQLPVASRISILESFNHGKVDVLVAIDEGDDDVL- 313
Query: 333 INSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSF 392
E +RG+DFQ + +V+NFD PL Y+HR GRTARG +G A++F
Sbjct: 314 ------------AEFSAARGVDFQNLHSVVNFDIPLKYDQYVHRVGRTARGNREGMAVTF 361
Query: 393 VSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYR 452
V + E +N + E L D+ + P F+ +GF YR
Sbjct: 362 VGVNEN-------------------INQIGESLAA----DNQTLAPLDFDTKSAEGFRYR 398
Query: 453 AKDAWRS-------------------------NYFEDNPTDLETLRHDKALYTVRIQSHL 487
S ++FE+NP DL+ L+HD L ++ L
Sbjct: 399 VNSVLESITRHQIKEAQKIYIKREILNAEKLKSHFEENPKDLQILKHDTTLIPEKVNPAL 458
Query: 488 ADVPDYI 494
+PDY+
Sbjct: 459 RQIPDYL 465
>gi|303273436|ref|XP_003056079.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462163|gb|EEH59455.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 598
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 176/567 (31%), Positives = 285/567 (50%), Gaps = 79/567 (13%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+AK + PT +Q RAIPL+L KDVL RA TGSGKT A+ +P I KI+ +
Sbjct: 19 LRALAKKKFKCPTAVQSRAIPLVLAGKDVLARAHTGSGKTAAYLLPAIHKIMQRSDSKTK 78
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDI--SEQVDVSVQEPLLVERPDIV 147
+ L+L P+ EL Q+ K ++C+ ++ ++ S DV + V P+I+
Sbjct: 79 SNPRVLILVPTHELAQQVMKEAVSFLVECAPTLRAGELTCSGSADVLPRNFAGVP-PEIL 137
Query: 148 VATPARALAHLKAKTLD---LKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAIL 204
V+TP+R A ++ L S LE ++DEADL+ SFGYEDD++ + + Q +L
Sbjct: 138 VSTPSRVAACIRGGKFPPRALNSGLEFFVLDEADLLLSFGYEDDIRCIADATERGCQCML 197
Query: 205 ASATLSEDVLSLKHLILRNPVILKLE------------------EPAIAPVSQLAHYHIL 246
SAT +D+ LK ++L NPV + + + A+ P+ ++HY +
Sbjct: 198 VSATSPDDLSKLKAIVLHNPVNVDIALENNFVSGRVKEEQVTTGKSAVMPL--ISHYALE 255
Query: 247 AQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARC 306
E +K LL+L L + K+++FV++ D +L+L+L +F I CVL+ ELPA +R
Sbjct: 256 ILEKDKLLYCMALLRLGLCKKKSLVFVSSPDAAVRLRLFLHKFGIPCCVLHEELPANSRA 315
Query: 307 HAVYQFNQGLYDVII-ASDEKALETPQINSTN-----NRKRKRDK------ESGVSRGID 354
H +++FN+G+YD +I A+D+ + +N N + KRKR+ E GV RGID
Sbjct: 316 HILHEFNRGVYDYMIAAADDLSSSISVVNDDNKDFTKHTKRKRNAMSHAQTEFGVVRGID 375
Query: 355 FQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLRE 414
F+ V V+N D P+ YIHR GRT R GTA++ + + + D LS S+
Sbjct: 376 FKDVHTVLNLDVPISASDYIHRVGRTGRAGQPGTAITLTTPKNARALED--MLSRHSVSR 433
Query: 415 QDLMNDVNEYLMTNLHEDDFIIKPYQ-FNLDEVKGFEYRAKDAWR--------------- 458
D + + + PY+ + V+ YRA+DA R
Sbjct: 434 HDTRSAI-------------ALMPYKMLRREAVEALRYRAEDAARAVGRTAVREARLREL 480
Query: 459 ----------SNYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPPALKKLARIEDD 508
+ +F+ NPTDL L+ L + + Q HL +P YI + +
Sbjct: 481 RAELLNSERLAAHFDGNPTDLALLKRASCLISHQEQPHLCHLPSYIRSQKVTCSSAKTGK 540
Query: 509 GDEDVRAEPITDEEYNKQYEEYKKRSK 535
++ E +TDE ++ ++++ + S+
Sbjct: 541 KNKHTEGEKLTDETTDEIHDDHDEPSE 567
>gi|255070509|ref|XP_002507336.1| helicase [Micromonas sp. RCC299]
gi|226522611|gb|ACO68594.1| helicase [Micromonas sp. RCC299]
Length = 605
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 164/541 (30%), Positives = 278/541 (51%), Gaps = 80/541 (14%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+ + + PT +Q +AIPL+L KDV+VRA TGSGKT A+ +P+ ++ +
Sbjct: 28 LKALKRKQYNAPTAVQAQAIPLVLSGKDVVVRAHTGSGKTAAYLLPVAHIVMQNHAHGAL 87
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDI-SEQVDVSVQEPLLVERPDIVV 148
+A+VL P++EL NQ+ K + +C+ ++ ++ + + P+I+V
Sbjct: 88 PNPRAIVLVPTRELANQVTKEASSILCQCAPTLRAGELPASGCAPEILREFAGAPPEILV 147
Query: 149 ATPARALAHLKAKTLD---LKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILA 205
TPAR + ++ L S L+++++DEAD++ SFGY D+K + + + Q+IL
Sbjct: 148 GTPARVVECIRCGFFPPDALNSGLDLLVLDEADMLLSFGYNHDIKCIAAEVQRGCQSILL 207
Query: 206 SATLSEDVLSLKHLILRNPVILKL-----------EEPAIAPVS--QLAHYHILAQEDEK 252
SAT +E++ ++ L+L NPV L L E A+ PV +++HY I D+K
Sbjct: 208 SATTNEELTGMQSLVLHNPVQLDLGSLNRNRCGQTETNAVQPVQSPRISHYIIKLHTDDK 267
Query: 253 ATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQF 312
L +L L + KT++FV+ D +L+L+L +F IS C L+ ELP +R H + ++
Sbjct: 268 LLYCMALFRLGLCEKKTLVFVSHSDAAIRLRLFLAKFSISCCALHHELPYNSRAHILQEY 327
Query: 313 NQGLYDVIIA--------------SDEKALETPQINSTN-----NRKRKRDKESGVSRGI 353
N+G+YD +IA + + L+ +N++ R++ K+ GV RGI
Sbjct: 328 NRGVYDCMIAVADDISARTKKESEARDLMLDGKHLNASEEVKRFGRQKDAHKDFGVVRGI 387
Query: 354 DFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLR 413
DF+ V VINFD P D Y+H+ GRT RG G+A++FVSL E +
Sbjct: 388 DFKQVRTVINFDVPSDASAYVHQIGRTGRGGEHGSAITFVSLSEVRKI------------ 435
Query: 414 EQDLMNDVNEYLMTNLHEDDFIIKPY-QFNLDEVKGFEYRAKDAWRS------------- 459
+ + D+ EY + + KP+ + +++V+ YRA+D R+
Sbjct: 436 -EAIQQDLKEY---GENGSSLVFKPFGKLAIEDVEALRYRAEDVSRTVGRASVRDARVRE 491
Query: 460 ------------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPPALKKLARIED 507
+F++NP +L L+HD L R HL +P+Y+ K + R+E+
Sbjct: 492 IRTELLNSDRLAAHFDENPDELILLKHDFRLAKQRALPHLNHLPNYL--RGGKPVKRLEE 549
Query: 508 D 508
+
Sbjct: 550 N 550
>gi|67470935|ref|XP_651424.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
gi|56468157|gb|EAL46038.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
gi|449708575|gb|EMD48009.1| ATP-dependent RNA helicase dbp9, putative [Entamoeba histolytica
KU27]
Length = 551
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 173/504 (34%), Positives = 281/504 (55%), Gaps = 76/504 (15%)
Query: 33 IAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQET 92
+ K +++PT+IQ + IP L+ KD++ +ARTGSGKT A+ IP++ ++ + Q Q +
Sbjct: 28 LKKNNFIKPTIIQSQFIPFALEGKDIICQARTGSGKTLAYVIPILNNLL-VSQEEQ-RRI 85
Query: 93 KALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPA 152
+ ++L+PS+ELC Q KN+ + +K + ++++ + V Q+ + PDI+ ATPA
Sbjct: 86 RVIILNPSRELCYQC-KNVIDQLLKGYFGISVLNVANENGVISQKGKMKSIPDIITATPA 144
Query: 153 RALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSED 212
L +LK KT + +EI + DE DL+ ++GYE+D+K + K +PK L SAT+++D
Sbjct: 145 TLLQYLK-KTGNNLDGVEISVYDEVDLMIAYGYENDIKELNKKIPKESVKWLLSATINDD 203
Query: 213 VLSLKHLILRNPVILKLEEPAIAPVSQLAHYHI-LAQEDEKATILYTLLKLNLVQGKTII 271
+ +LKHL+L++ V +++EE ++ + Y I ++++KA LY LLKLN++ GK +I
Sbjct: 204 IETLKHLMLKSAVKIRIEEEQVS----VEEYIINCERKEDKALNLYVLLKLNMIHGKVLI 259
Query: 272 FVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALET- 330
FVN++ KC+ +KL+L+ F I + VLNS+LP R + + QFN ++++IA+DE ++
Sbjct: 260 FVNSIQKCFYVKLFLDLFSIPSVVLNSDLPRDIRMNIIEQFNNKEFNILIATDETTIQKI 319
Query: 331 -----PQINSTNNRKRKRDKES------------GVSRGIDFQFVSNVINFDFPLDIQCY 373
++ NN + D VSRGIDFQ V+ VINFD P+ I Y
Sbjct: 320 IPKKLQEVKDKNNMEEVGDHSHIISEGDSAQENYSVSRGIDFQDVACVINFDCPISIVSY 379
Query: 374 IHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHE-D 432
HR GRT R +GTA++FV ++D +++ ++D HE
Sbjct: 380 THRIGRTGRASKKGTAITFVLNEDKD---------YITSIKKD-------------HEIK 417
Query: 433 DFIIKPYQFNLDEVKGFEYRAKDAWRS---NYFED-----------NPTDLE------TL 472
DFII+P V F+ R D R+ N D N +L+ +
Sbjct: 418 DFIIEP-----SVVGAFKTRVYDMQRNVTKNACNDARIKDYKKEVGNVEELKKSVGKLNI 472
Query: 473 RHDKALYTVRIQSHLADVPDYIVP 496
+H AL R Q HL D+PDY++P
Sbjct: 473 KHTAALVDQRAQ-HLKDIPDYLLP 495
>gi|224094833|ref|XP_002310257.1| predicted protein [Populus trichocarpa]
gi|222853160|gb|EEE90707.1| predicted protein [Populus trichocarpa]
Length = 597
Score = 262 bits (669), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 176/511 (34%), Positives = 268/511 (52%), Gaps = 85/511 (16%)
Query: 40 EPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ-ETKALVLS 98
EPT IQ AIPLILQ KDV+ RA+TGSGKT A+ +P++QK+++ + + + A +L
Sbjct: 62 EPTPIQRAAIPLILQGKDVVARAKTGSGKTLAYLLPLLQKLLSTADSNRKKLSPSAFILV 121
Query: 99 PSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATP---ARAL 155
PS ELC Q++K + L C +K V ++ + S L PDI+V+TP A++L
Sbjct: 122 PSGELCQQVYKEVSSLIDSCKAQLKVVQLTSNMPASDLRNALAGPPDILVSTPSCVAKSL 181
Query: 156 AHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSEDVLS 215
+ K+ + SLEI+++DEADL+ SFGYE+D+KA+ +P+ Q +L SAT S DV
Sbjct: 182 SVGVLKSESINDSLEILVLDEADLLLSFGYEEDLKALTALVPRRCQCLLMSATSSADVDK 241
Query: 216 LKHLILRNPVILKLEE-----PAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTI 270
LK L+L NP +L L E + P + + + + +K + LLKL+LVQ K +
Sbjct: 242 LKKLVLHNPYVLTLPEVEGVKDEVIP-KNVQQFWVSCGDRDKLVHILALLKLDLVQKKVL 300
Query: 271 IFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD------ 324
IF N +D ++LKL+LE+ +FN GL+D +IA+D
Sbjct: 301 IFTNAIDMSFRLKLFLEK----------------------EFNAGLFDYLIATDDRETKE 338
Query: 325 -EKALETPQINSTNNR---KRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRT 380
EKA E + ++ K+K D E GV RGIDF+ V VIN+D PL Y+HR GRT
Sbjct: 339 KEKANEGSLAETRKSKKHAKQKLDSEFGVVRGIDFKNVHTVINYDMPLSATGYVHRIGRT 398
Query: 381 ARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQ 440
R + G+++S VS E +++ ++ +L + + + +I PY
Sbjct: 399 GRA-----------------YSTGSSVSLVSPDEMEILEEIKSFLGDDENNESNVISPYP 441
Query: 441 -FNLDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRH 474
+ V+ YRA+D +S +FE NP DL+ L+H
Sbjct: 442 LLTKNAVESLRYRAEDTAKSVTKIAVREARAQDLRNEILNSEKLKAHFEVNPRDLDLLKH 501
Query: 475 DKALYTVRIQSHLADVPDYIVPPALKKLARI 505
DK L HL+DVPDY++ K+ +++
Sbjct: 502 DKVLSKKPPAPHLSDVPDYLLDATTKEASKM 532
>gi|353243874|emb|CCA75359.1| related to DBP9-ATP-dependent RNA helicase of the DEAD-box family
involved in biogenesis of the 60S ribosomal subunit
[Piriformospora indica DSM 11827]
Length = 702
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 138/336 (41%), Positives = 217/336 (64%), Gaps = 28/336 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTA-- 87
L+A+A +++PTL+QE+AIP+ L+ +DVL RARTGSGKT A+ +P++++++ ++ +
Sbjct: 29 LRALADQSFIKPTLVQEKAIPVALEGRDVLCRARTGSGKTVAYCVPVLERVLAGRKASSN 88
Query: 88 --QVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPD 145
+ Q T+A++L P++EL Q+ +++L+ C D+ +++ + + L +RPD
Sbjct: 89 DEEKQSTRAVILVPTRELSEQVTTQLKKLSKYCE-DIIVSNVTSGGNAHRNKMLGDDRPD 147
Query: 146 IVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDM---------------- 189
+VV TPAR LA ++KTL L + LEI++IDEADL+ S+G+ M
Sbjct: 148 VVVGTPARVLALAQSKTLSLHA-LEILVIDEADLILSYGHSQTMQTLLSSSTRSSDETTN 206
Query: 190 ----KAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKL-EEPAIAPVSQLAHYH 244
K +LP +YQ++L SATL+ DV +LK L+LR+PVIL L EE A S L+ Y
Sbjct: 207 DGTSKQTKSYLPSVYQSVLMSATLTADVTTLKSLVLRDPVILTLTEEEAKDSRSLLSQYV 266
Query: 245 ILAQED-EKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAK 303
+ D EK +Y +LKL L++GK I+FVN V++CY+LKL+LEQF I CVLN ELP
Sbjct: 267 LKVDNDAEKFLHIYVILKLKLIKGKAILFVNDVERCYRLKLFLEQFSIRCCVLNRELPIN 326
Query: 304 ARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNR 339
+R H + +FN+G+YD IIA+DE +++S +++
Sbjct: 327 SRYHTIQEFNKGIYDYIIATDESGARNEEVDSDSDQ 362
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 91/184 (49%), Gaps = 33/184 (17%)
Query: 344 DKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND 403
+KE SRG+DF V+ V+NFD PL + Y+HR GRTAR G A+SFV + +
Sbjct: 438 EKEYSTSRGVDFLDVACVVNFDLPLSSRSYVHRVGRTARAGRGGVAISFVVTTDYKIKGG 497
Query: 404 GTALSFVSL-----REQD-LMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAW 457
+ L + R+Q+ DV Y + + IK + + + + GF YR +DA
Sbjct: 498 KSHLEETKIWRRIERDQNGWSKDV--YSLPAEDKPQSCIKDFTLSPNLLAGFRYRMQDAL 555
Query: 458 RS-------------------------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPD 492
RS +FED+P DLE LRHDK L+ RIQSH+ VP
Sbjct: 556 RSVTGKAVKEARIKELKNEILNSGKLKAHFEDHPLDLEYLRHDKPLHPARIQSHMKYVPS 615
Query: 493 YIVP 496
Y++P
Sbjct: 616 YLLP 619
>gi|159477789|ref|XP_001696991.1| hypothetical protein CHLREDRAFT_120099 [Chlamydomonas reinhardtii]
gi|158274903|gb|EDP00683.1| predicted protein [Chlamydomonas reinhardtii]
Length = 516
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 167/506 (33%), Positives = 257/506 (50%), Gaps = 56/506 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+ K G+ +PT +Q AIP L+ KDV+ RARTGSGKT A+ +P + KI+ T V
Sbjct: 13 LRALGKRGFTKPTPVQLEAIPKTLEGKDVVARARTGSGKTLAYLLPTLHKILT---TEDV 69
Query: 90 QET-KALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
+ + +A++L P++ELC Q+ + C D+ ++ + + + IVV
Sbjct: 70 RGSFRAIILVPTRELCQQVAEEAAATAQHCGADITVRVCGARLPGAALKRAVATAGHIVV 129
Query: 149 ATPARALAHLKAKTLD---LKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILA 205
+TP + L+ L L S L ++++DEADL+ S+GYE+D++ + +P+ Q IL
Sbjct: 130 STPGKIATALREGLLPAAALTSRLAVLVLDEADLLLSYGYEEDLQLLAPQVPRSCQCILM 189
Query: 206 SATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLV 265
SAT S+DV L+ L+L NP+ L L A +K + LL+L L
Sbjct: 190 SATSSDDVERLQKLVLHNPITLNLAAAGAGAAGTGAGAEEGCPRPDKLLHVMALLRLGLC 249
Query: 266 QGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE 325
+ K ++FVNTVD+ +L+L+LE F + +LN+ELP +R H + FN+GL+D +IA+D+
Sbjct: 250 RKKVLLFVNTVDEGVRLRLFLEAFGVRPALLNAELPLNSRSHILSSFNRGLFDFLIATDD 309
Query: 326 KALETPQINSTNNRKRK------RDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGR 379
KA + + R K +D E GV+RGIDF+ V VIN+D P +Q Y+HR GR
Sbjct: 310 KAGARLGKDGSGKRGAKGGDGARKDAEFGVTRGIDFKGVRTVINYDPPSSLQGYVHRVGR 369
Query: 380 TARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPY 439
T R GTA+S + + +L ND D D ++PY
Sbjct: 370 TGRAGESGTAISLFTPQHSEL-ND----------------DEGAGAGAGGKGRDAALRPY 412
Query: 440 -QFNLDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLR 473
+ + +V+ YR +D R YFED+ + LR
Sbjct: 413 GRLSQAQVEALRYRGEDVARGITKAVIKEARAKELKNELLTSERLKEYFEDHAAEKALLR 472
Query: 474 HDKALYTVRIQSHLADVPDYIVPPAL 499
HDK L +HL +P Y+ P+L
Sbjct: 473 HDKPLAAAPAAAHLKHMPAYLKDPSL 498
>gi|407038398|gb|EKE39109.1| DEAD/DEAH box helicase, putative [Entamoeba nuttalli P19]
Length = 552
Score = 254 bits (650), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 171/504 (33%), Positives = 277/504 (54%), Gaps = 75/504 (14%)
Query: 33 IAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQET 92
+ K +++PT+IQ + IP L+ KD++ +ARTGSGKT A+ IP++ ++ + Q Q +
Sbjct: 28 LKKNNFIKPTIIQSQFIPFALEGKDIICQARTGSGKTLAYVIPILNNLL-VSQEEQ-RRI 85
Query: 93 KALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPA 152
+ ++L+PS+ELC Q KN+ + +K + ++++ + V Q+ + PDI+ ATPA
Sbjct: 86 RVIILNPSRELCYQC-KNVIDQLLKGYFGISVLNVANENGVISQKGKMKSIPDIITATPA 144
Query: 153 RALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSED 212
L +LK KT + +EI + DE DL+ ++GYE+D+K + K +PK L SAT+++D
Sbjct: 145 TLLQYLK-KTGNNLDGVEISVYDEVDLMIAYGYENDIKELNKKIPKESVKWLLSATINDD 203
Query: 213 VLSLKHLILRNPVILKLEEPAIAPVSQLAHYHI-LAQEDEKATILYTLLKLNLVQGKTII 271
+ +LKHL+L++ V +++ + Y I ++++KA LY LLKLN++ GK +I
Sbjct: 204 IETLKHLMLKSAVKIRI---EEEEQVSVEEYIINCERKEDKALNLYVLLKLNMIHGKVLI 260
Query: 272 FVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALET- 330
FVN++ KC+ +KL+L+ F I + VLNS+LP R + + QFN ++++IA+DE ++
Sbjct: 261 FVNSIQKCFYVKLFLDLFSIPSVVLNSDLPRDIRMNIIEQFNNKEFNILIATDETTIQKI 320
Query: 331 -----PQINSTNNRKRKRDKES------------GVSRGIDFQFVSNVINFDFPLDIQCY 373
++ NN + D VSRGIDFQ V+ VINFD P+ I Y
Sbjct: 321 IPKKLQEVKDKNNMEEVGDHSHIISEGDSAQENYSVSRGIDFQDVACVINFDCPISIVSY 380
Query: 374 IHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHE-D 432
HR GRT R +GTA++FV ++D +++ ++D HE
Sbjct: 381 THRIGRTGRASKKGTAITFVLNEDKD---------YITSIKKD-------------HEIK 418
Query: 433 DFIIKPYQFNLDEVKGFEYRAKDAWRS---NYFED-----------NPTDLE------TL 472
DFII+P V F+ R D R+ N D N +L+ +
Sbjct: 419 DFIIEP-----SVVGAFKTRVYDMQRNVTKNACNDARIKDYKKEVGNVEELKKSVGKLNI 473
Query: 473 RHDKALYTVRIQSHLADVPDYIVP 496
+H AL R Q HL D+PDY++P
Sbjct: 474 KHTAALVDQRAQ-HLKDIPDYLLP 496
>gi|242081725|ref|XP_002445631.1| hypothetical protein SORBIDRAFT_07g022960 [Sorghum bicolor]
gi|241941981|gb|EES15126.1| hypothetical protein SORBIDRAFT_07g022960 [Sorghum bicolor]
Length = 632
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 182/540 (33%), Positives = 282/540 (52%), Gaps = 88/540 (16%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ 90
+A+ K G + T IQ AIPLIL+ KDV+ +A+TGSGKT A+ +P++ +++ L +++
Sbjct: 53 RALRKKGIAKATPIQREAIPLILEGKDVVAKAKTGSGKTFAYLLPLLHELLKLSSEGRIR 112
Query: 91 ET--KALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQV---DVSVQEPLLVERPD 145
+ A +L P++ELC Q++ L C+ ++ V ++ + D++V L P+
Sbjct: 113 KPAPNAFILVPTRELCQQVYNEALSLLEFCTCKLRVVQVTASMSDKDITVA---LSGPPN 169
Query: 146 IVVATPARALAHLKAKTL----DLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQ 201
I+V+TPA +A +K + +K SL ++I DEADL+ S+ EDD+KA++ +P+ Q
Sbjct: 170 ILVSTPA-CVATCISKGIIRGPSVKESLSMMIFDEADLLLSYRCEDDLKALIPHIPRSCQ 228
Query: 202 AILASATLSEDVLSLKHLILRNPVILKLEEPA-----IAPVSQLAHYHILAQEDEKATIL 256
+IL SAT S DV L L+L NP IL L E + P + + I +K +
Sbjct: 229 SILMSATSSSDVDKLTKLLLHNPFILTLSEVGGTKDDMIP-KNVQQFWISCDAKDKMLHM 287
Query: 257 YTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGL 316
LLK L+Q K +IFVN++D ++L+L+LE+F I + VLN+ELP +R H + FN L
Sbjct: 288 LALLKFELIQKKVLIFVNSIDMAFRLRLFLEKFGIGSAVLNAELPQNSRLHIIEAFNARL 347
Query: 317 YDVIIASDEKAL---------------ETPQINSTNNRKRK---------RDKESGVSRG 352
+D +IA+D+ Q N N ++ K D E GV RG
Sbjct: 348 FDYLIATDDTKTKEEKENKKEPKLSRKREKQTNKENEKESKVSRKHLQQTLDAEFGVVRG 407
Query: 353 IDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSL 412
IDF+ V V+NFD PLD Y+HR GRT R G ++S VS
Sbjct: 408 IDFKNVFTVVNFDMPLDAAGYVHRVGRTGRANKTGASISLVS------------------ 449
Query: 413 REQDLMNDVNEYLMTNLHEDDF-IIKPYQ-FNLDEVKGFEYRAKDAWRS----------- 459
+E+D E+++ ++ + D I P+ D V+ YRA+D RS
Sbjct: 450 QEEDSTFKEIEHMLQDVEKKDMDCISPFPLLTKDAVESLRYRAQDVARSVTTRDIQEARR 509
Query: 460 --------------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPPALKKLARI 505
++FE+NP DL+ L+HDK L I +HL DVPDY++ P K+ + +
Sbjct: 510 QDIKNEILNSEKLKSHFEENPRDLDLLKHDKLLSNKEIPAHLRDVPDYLIDPKTKEASNV 569
>gi|226507661|ref|NP_001141827.1| uncharacterized protein LOC100273968 [Zea mays]
gi|194706072|gb|ACF87120.1| unknown [Zea mays]
gi|413933175|gb|AFW67726.1| putative DEAD-box ATP-dependent RNA helicase family protein [Zea
mays]
Length = 634
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 182/537 (33%), Positives = 283/537 (52%), Gaps = 89/537 (16%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ 90
+A+ K G L+ T IQ AIPLIL+ KDV+ +A+TGSGKT A+ +P++ +++ L +++
Sbjct: 54 RALRKKGILKATPIQREAIPLILEGKDVVAKAKTGSGKTFAYLLPLLHELLKLSSEGRIR 113
Query: 91 ET--KALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQV---DVSVQEPLLVERPD 145
+ A +L P+++LC+Q++ L C+ ++ V ++ + D++V L P+
Sbjct: 114 KPAPNAFILVPTRDLCHQVYNEALSLLELCTCKLRVVQVTASMSDKDITVA---LSGPPN 170
Query: 146 IVVATPARALAHLKAKTL----DLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQ 201
I+V+TPA +A +K + +K SL ++I+DEADL+ S+ E D+KA++ +P+ Q
Sbjct: 171 ILVSTPA-CVATCISKGIIRGPAVKESLSMMILDEADLLLSYRCEVDLKALIPHIPRSCQ 229
Query: 202 AILASATLSEDVLSLKHLILRNPVILKLEEPAIAP----VSQLAHYHILAQEDEKATILY 257
+IL SAT S DV L L+L NP +L L E A + + I +K +
Sbjct: 230 SILMSATSSSDVDKLTKLLLHNPFVLTLSEVGQAKDDVIPKNVQQFWISCDAKDKILHIL 289
Query: 258 TLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLY 317
LLK L+Q K +IFVN++D ++L+L LE+F I + VLN+ELP +R H + FN L+
Sbjct: 290 ALLKFELIQKKVLIFVNSIDMAFRLRLILEKFGIRSAVLNAELPQNSRLHIIEAFNARLF 349
Query: 318 DVIIASDEKALETPQINSTN------NRKRKR---------------------DKESGVS 350
D +IA+D+ + Q N N +RKRK+ D E GV
Sbjct: 350 DYLIATDDTKTKEKQTNEENKKEATLSRKRKKQTNKENQKEQKVSRKHLQQTLDAEFGVV 409
Query: 351 RGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFV 410
RGIDF+ V V+NFD PLD Y+HR GRT R G ++S VS +E +
Sbjct: 410 RGIDFKNVFTVVNFDMPLDATGYVHRIGRTGRANKTGASISLVSPKEDSTFKE------- 462
Query: 411 SLREQDLMNDVNEYLMTNLHEDDF-IIKPYQ-FNLDEVKGFEYRAKDAWRS--------- 459
E+++ ++ + D I P+ D V+ YRA+D RS
Sbjct: 463 -----------IEHMLQDVEKKDMDCISPFPLLTKDAVESLRYRAQDVARSVTTRDVQEA 511
Query: 460 ----------------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPPALK 500
++FE+NPTDL+ L+HDK L I ++L DVPDY++ P K
Sbjct: 512 RRQDIKNEILNSEKLKSHFEENPTDLDLLKHDKLLCNKEIPAYLRDVPDYLIDPKTK 568
>gi|326529835|dbj|BAK08197.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 661
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 179/516 (34%), Positives = 277/516 (53%), Gaps = 64/516 (12%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ 90
+A+ K G + T IQ AIPLIL+ KDV+ +A+TGSGKT A+ +P++Q+++ L + +++
Sbjct: 96 RALRKKGLTKTTPIQREAIPLILEGKDVVAKAKTGSGKTFAYLLPLLQELLKLCKEGRIR 155
Query: 91 ET--KALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
++ AL+L P++ELC Q++ L C+ +K V ++ + + L P+I+V
Sbjct: 156 KSASNALILVPTRELCQQVYNEASSLLELCTSKLKIVQVTASMSDKDIKLALSGPPNILV 215
Query: 149 ATPARALAHLKAKTL---DLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILA 205
TPA A + + +K SL ++I+DEADL+ S+ EDD+KA++ +P+ Q+IL
Sbjct: 216 TTPACVAACISKGIVQGSSIKESLSMMILDEADLLLSYRCEDDLKALVPHIPRSCQSILM 275
Query: 206 SATLSEDVLSLKHLILRNPVILKLEEPA-----IAPVSQLAHYHILAQEDEKATILYTLL 260
SAT S D+ L L+L NP +L L E + P + + I +K + +LL
Sbjct: 276 SATSSPDIDKLTKLLLHNPFVLTLTEVGHAKDDVVP-KNVQQFWISCSAKDKMLYILSLL 334
Query: 261 KLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVI 320
KL L+Q K +IFVN++D ++L+L+LE+F I + VLN+ELP +R H + FN L+D +
Sbjct: 335 KLELIQKKVLIFVNSIDNAFRLRLFLEKFAIRSAVLNAELPQNSRLHIIEAFNARLFDYL 394
Query: 321 IASDE-KALETPQINSTNNRKRKR---------DKESGVSRGIDFQFVSNVINFDFPLDI 370
IA+D+ K + Q N + + K D E GV RGIDF+ V V+NFD P +
Sbjct: 395 IATDDNKTKDAKQTNKESKKDSKASRKHLQQTLDAEFGVVRGIDFKNVFTVVNFDMPPNP 454
Query: 371 QCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLH 430
YIHR GRT R G ++S VS V + ++ DV +
Sbjct: 455 AGYIHRIGRTGRANKTGASISLVS----------PEEENVFEEIEHMLQDVEK------- 497
Query: 431 EDDFIIKPYQ-FNLDEVKGFEYRAKDAWRS-------------------------NYFED 464
+D I P+ + V+ YRA+D RS +FE+
Sbjct: 498 KDTNCILPFPLLTKNAVESLRYRAQDVARSVTSRDIQEARRQDVKNEILNSEKLKAHFEE 557
Query: 465 NPTDLETLRHDKALYTVRIQSHLADVPDYIVPPALK 500
NPTDL+ L+HDK L I +HL DVP+Y++ P K
Sbjct: 558 NPTDLDLLKHDKLLTNKSIPAHLRDVPEYLIDPTTK 593
>gi|452820880|gb|EME27917.1| ATP-dependent RNA helicase [Galdieria sulphuraria]
Length = 525
Score = 251 bits (641), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 167/502 (33%), Positives = 275/502 (54%), Gaps = 37/502 (7%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++AI + G+L PT +Q + +P +L KD L+ A TG+GKT +A+P+I +++ + T
Sbjct: 24 VKAIQRAGFLHPTPVQCQGLPCLLGGKDALISAPTGTGKTVCYAVPIIHQLLKEESTMDP 83
Query: 90 QET--------KALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLV 141
T +ALVL P+KEL Q+ Q L S ++ + + ++ S Q+ L
Sbjct: 84 NSTSFHDGMQWEALVLVPTKELAYQVTATFQLLNRYNS--IRTLALLQKQPSSWQKVALT 141
Query: 142 ERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQ 201
I+V TPA L L+ T +K+ L+ +++DEADL+FSFGYE DM+ +L +P Q
Sbjct: 142 H---ILVTTPATLLHLLQQGTYSIKN-LKWLVVDEADLLFSFGYEQDMQKILPSIPAKVQ 197
Query: 202 AILASATLSEDVLS-LKHLILRNPVILKL-------EEPAIAPVSQLAHYHILAQEDEKA 253
++ SATL ++ L+H + + ++ +E + +++ HY + +E +K
Sbjct: 198 SVFVSATLDKETYHFLRHFEDKRHAMQQIRIKHDVTQEERLQVLAK-HHYVQVEKEQDKY 256
Query: 254 TILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFN 313
+++ L+KL +++GK +IFVN+VDK ++LKL L+QF I T +LN+ELP +R H+V QFN
Sbjct: 257 LVVFALIKLQVLKGKILIFVNSVDKGFRLKLLLDQFYIHTSLLNAELPLLSRLHSVEQFN 316
Query: 314 QGLYDVIIASDEKALETPQINST---------NNRKRKRDKESGVSRGIDFQFVSNVINF 364
QG ++IA+DE + ++ S+ + ++++ E +SRG+DFQ V+ V+N
Sbjct: 317 QGKSSILIATDEACIWNQKMKSSWKANANTLDKEKTKEQENEFDLSRGMDFQQVAVVLNL 376
Query: 365 DFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQ-DLMNDGTALSFVSLREQDLMNDVNE 423
D P + YIHRAGRTAR G L+ V+ E L N + + L +++
Sbjct: 377 DCPYSLISYIHRAGRTARAGKAGDILTLVTSEEMPRLQNHFEGMGLKQEQWNPLKVKMSQ 436
Query: 424 YLMTNLHEDDFIIKPYQFNLDEVKGFEYRAK---DAWRSNYFEDNPTDLETLRHDKALYT 480
+D + K + L E + E R + YF + D E L+ D+ L T
Sbjct: 437 VEPFRYRVEDCLYKITKNVLKEARATEIRREMLNSEKMKEYFAHHALDFEALKSDRPLNT 496
Query: 481 VRIQSHLADVPDYIVPPALKKL 502
R HLAD+P Y++P AL+ L
Sbjct: 497 -RTNPHLADIPSYLMPSALRPL 517
>gi|167382435|ref|XP_001736101.1| ATP-dependent RNA helicase dbp9 [Entamoeba dispar SAW760]
gi|165901540|gb|EDR27618.1| ATP-dependent RNA helicase dbp9, putative [Entamoeba dispar SAW760]
Length = 552
Score = 251 bits (640), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 175/544 (32%), Positives = 296/544 (54%), Gaps = 66/544 (12%)
Query: 33 IAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQET 92
+ K +++PT+IQ + IP L+ KD++ +ARTGSGKT A+ IP++ ++ + Q Q +
Sbjct: 28 LKKNNFVKPTIIQSQFIPFALEGKDIICQARTGSGKTLAYVIPILNNLL-VSQEEQ-RRI 85
Query: 93 KALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPA 152
+ ++L+PS+ELC Q KN+ + +K + ++++ + V Q+ + PDI+ ATPA
Sbjct: 86 RVVILNPSRELCYQC-KNVIDQLLKGYFGISVLNVANENGVISQKGKMKSIPDIITATPA 144
Query: 153 RALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSED 212
L +LK KT + +EI + DE DL+ ++GYE+D+K + K +PK L SAT+++D
Sbjct: 145 TLLQYLK-KTGNNLDGVEISVYDEVDLMIAYGYENDIKELNKKIPKESVKWLLSATINDD 203
Query: 213 VLSLKHLILRNPVILKLEEPAIAPVSQLAHYHI-LAQEDEKATILYTLLKLNLVQGKTII 271
+ +LKHL+L++ V +++ + Y I ++++KA LY LLKLN++ GK +I
Sbjct: 204 IETLKHLMLKSAVKIRI---EEEEQVSVEEYIINCERKEDKALNLYVLLKLNMIHGKVLI 260
Query: 272 FVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALET- 330
FVN++ KC+ +KL+L+ F I + VLNS+LP + R + + QFN ++++IA+DE ++
Sbjct: 261 FVNSIQKCFYVKLFLDLFSIPSVVLNSDLPREIRMNIIEQFNNKEFNILIATDETTIQKV 320
Query: 331 -----PQINSTNNRKRKRDKES------------GVSRGIDFQFVSNVINFDFPLDIQCY 373
++ N + D VSRGIDFQ V+ VINFD P+ I Y
Sbjct: 321 IPKKLQEVKDKNIMEEDGDHSHIISEGDSAQENYSVSRGIDFQDVACVINFDCPISIVSY 380
Query: 374 IHRAGRTARGKNQGTALSFV---------SLRE----QDLMNDGTALSFVSLREQDLMND 420
HR GRT R +GTA++FV S+++ +D + + + + R D+ +
Sbjct: 381 THRIGRTGRASKKGTAITFVLNEDKDYITSIKKDHEIKDFIIEPSVVGAFKTRVYDMQRN 440
Query: 421 VNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRSNYFEDNPTDLETLRHDKALYT 480
V + +D IK Y+ EV E K + N ++H AL
Sbjct: 441 VTKNAC-----NDARIKDYK---KEVGNVEELKKSVGKLN-----------IKHTAALVD 481
Query: 481 VRIQSHLADVPDYIVPP-ALKKLARIEDDGDE----DVRAEPITDEEYNKQYEEYKKRSK 535
R Q HL D+PDY++P +++L + D +E + + P + +K+ E K R
Sbjct: 482 QRAQ-HLKDIPDYLLPDNVVQRLKGVLDRTNEYEAKETKRNP--KSKSSKKRRESKPRKS 538
Query: 536 ENER 539
N++
Sbjct: 539 SNKK 542
>gi|242038265|ref|XP_002466527.1| hypothetical protein SORBIDRAFT_01g009400 [Sorghum bicolor]
gi|241920381|gb|EER93525.1| hypothetical protein SORBIDRAFT_01g009400 [Sorghum bicolor]
Length = 634
Score = 251 bits (640), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 181/543 (33%), Positives = 283/543 (52%), Gaps = 90/543 (16%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ 90
+A+ K G + T IQ AIPLIL+ KDV+ +A+TGSGKT A+ +P++ +++ L +++
Sbjct: 50 RALRKKGITKATPIQREAIPLILEGKDVVAKAKTGSGKTFAYLLPLLHELLKLSSEGRIR 109
Query: 91 ET--KALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQV---DVSVQEPLLVERPD 145
+ A +L P++ELC Q++ L C+ ++ V ++ + D++V L P+
Sbjct: 110 KPAPNAFILVPTRELCQQVYNEALSLLEFCTCKLRVVQVTASMSNKDITVA---LSGPPN 166
Query: 146 IVVATPARALAHLKAKTL----DLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQ 201
I+V+TPA +A +K + +K SL ++I+DEADL+ S+ EDD+KA++ +P+ Q
Sbjct: 167 ILVSTPA-CVATCISKGIIRGPSVKESLSMMILDEADLLLSYRCEDDLKALIPHIPRSCQ 225
Query: 202 AILASATLSEDVLSLKHLILRNPVILKLEEPAIAP----VSQLAHYHILAQEDEKATILY 257
+IL SAT S DV L L+L NP IL L A + + + +K +
Sbjct: 226 SILMSATSSSDVDKLTKLLLHNPFILTLSVVGQAKDDVIPKNVQQFWVSCDAKDKMLHIL 285
Query: 258 TLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLY 317
LLK L+Q K +IFVN++D ++L+L+LE+F I + VLN+ELP +R H + FN L+
Sbjct: 286 ALLKFELIQKKVLIFVNSIDMAFRLRLFLEKFGIRSAVLNAELPQNSRLHIIEAFNARLF 345
Query: 318 DVIIASDE-KALETPQINSTNNR------KRKR---------------------DKESGV 349
D +IA+D+ K E Q N N + KR++ D E GV
Sbjct: 346 DYLIATDDTKTKEEKQTNKENKKEPKLSHKREKQTNKENQKEPKVSRKHLQQTLDAEFGV 405
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSF 409
RGIDF+ V V+NFD PLD Y+HR GRT R G ++S VS E +
Sbjct: 406 VRGIDFKNVFTVVNFDMPLDAAGYVHRVGRTGRANKTGASISLVSPEEDSTFKE------ 459
Query: 410 VSLREQDLMNDVNEYLMTNLHEDDF-IIKPYQ-FNLDEVKGFEYRAKDAWRS-------- 459
E+++ ++ + D I P+ D V+ YRA+D R+
Sbjct: 460 ------------IEHMLQDVEKKDMDCISPFPLLTKDAVESLRYRAQDVARTVTTRDIQE 507
Query: 460 -----------------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPPALKKL 502
++FE+NP DL+ L+HDK L I +HL DVPDY++ P K+
Sbjct: 508 ARRQDIKNEILNSEKLKSHFEENPRDLDLLKHDKLLSNKEIPAHLRDVPDYLIDPKTKEA 567
Query: 503 ARI 505
+ +
Sbjct: 568 SNV 570
>gi|357115389|ref|XP_003559471.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 16-like
[Brachypodium distachyon]
Length = 653
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 176/518 (33%), Positives = 281/518 (54%), Gaps = 62/518 (11%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ 90
+A+ K G T IQ AIPLIL+ KDV+ +A+TGSGKT A+ +P++Q+++ L +++
Sbjct: 87 RALRKKGMTTTTPIQREAIPLILEGKDVVAKAKTGSGKTFAYLLPLLQELLKLSSEGRIR 146
Query: 91 ET--KALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
++ AL+L P++ELC Q+ L C+ VK V ++ + + L P+I+V
Sbjct: 147 KSAPNALILVPTRELCQQVFNEASSLLELCTSKVKIVQVTASMSDKDIKLALSGPPNILV 206
Query: 149 ATPARALAHLKAKTL----DLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAIL 204
TPA +A +K + +K SL ++I+DEADL+ S+ EDD+KA++ +P+ Q+IL
Sbjct: 207 TTPA-CVATCISKGIVQGSSIKESLSMMILDEADLLLSYRCEDDLKALVPHIPRSCQSIL 265
Query: 205 ASATLSEDVLSLKHLILRNPVILKLEEPAIAP----VSQLAHYHILAQEDEKATILYTLL 260
SAT S D+ L L+L NP IL L E A + + I +K + LL
Sbjct: 266 MSATSSPDIDKLTKLLLHNPFILTLTEVGHAKDDVIPRNVQQFSISCSAKDKMLYILALL 325
Query: 261 KLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVI 320
KL+L+Q K +IFVN++D ++L+L+LE+F I + VLN+ELP +R H + FN L+D +
Sbjct: 326 KLDLIQKKVLIFVNSIDMAFRLRLFLEKFGIRSAVLNAELPQNSRLHIIEAFNARLFDYL 385
Query: 321 IASDE----KALETPQINSTNNRKRKR------DKESGVSRGIDFQFVSNVINFDFPLDI 370
IA+D+ + ET + N ++R+ ++ D E GV RG+DF+ V V+NFD P +
Sbjct: 386 IATDDNKPKEVKETNKENKKDSRQSRKHSQQTLDAEFGVVRGVDFKNVFTVVNFDMPPNP 445
Query: 371 QCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLH 430
YIHR GRT R G ++S VS + + + ++ D+ + ++ +
Sbjct: 446 AGYIHRIGRTGRANKSGASISLVS----------PEENNIFEEIEQMVQDIAKKDISCIS 495
Query: 431 EDDFIIKPYQFNLDEVKGFEYRAKDAWRS-------------------------NYFEDN 465
+ K + V+ YRA+D RS +F +N
Sbjct: 496 SFPLLTK------NAVESLRYRAQDVARSVTSRDIQEARRQDIKNEILNSEKLKAHFVEN 549
Query: 466 PTDLETLRHDKALYTVRIQSHLADVPDYIVPPALKKLA 503
PTDL+ L+HDK L I +HL DVP+Y++ P K+ +
Sbjct: 550 PTDLDLLKHDKLLSNKTIPAHLRDVPEYLIDPTTKEAS 587
>gi|25148205|ref|NP_740967.1| Protein C24H12.4, isoform b [Caenorhabditis elegans]
gi|351020853|emb|CCD62829.1| Protein C24H12.4, isoform b [Caenorhabditis elegans]
Length = 567
Score = 249 bits (636), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 161/456 (35%), Positives = 244/456 (53%), Gaps = 73/456 (16%)
Query: 94 ALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEP--LLVERPDIVVATP 151
A++++P+KEL Q++K L +K S+ + + D++ +E L +R +VV TP
Sbjct: 99 AVIIAPTKELITQIYK----LFVKLSQALPFLQAINLCDINEEENSVWLEDRSHVVVTTP 154
Query: 152 ARAL--AHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
+ L L+ + L S L ++DEADL+ SFGYE++M + LP YQ ++ SATL
Sbjct: 155 GKLLRMCSLRPEYCTLVSYL---VMDEADLLLSFGYEEEMIKIRSKLPPTYQCLMTSATL 211
Query: 210 SEDVLSLKHLILRNPVI-LKLEEPAIAPVSQLAHYHILAQEDE-KATILYTLLKLNLVQG 267
+D+ +LK L + PVI +KL E + QL Y + DE + IL + KL L+ G
Sbjct: 212 KDDMTTLKKLFMTGPVITIKLTEGDLPNSDQLTQYQLTCGSDEERFAILVAMFKLKLIVG 271
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD--- 324
++I+FVNT+D+CYKL L L F + +C+LNS +PA +RCH + QFN+G Y ++IASD
Sbjct: 272 RSILFVNTIDRCYKLMLILRVFGLKSCILNSAMPANSRCHVINQFNEGSYQIVIASDVSD 331
Query: 325 -----------EKALETPQINSTNNRK-RKRDKESGVSRGIDFQFVSNVINFDFPLDIQC 372
K+ E P+ + +K K DKESGVSRGIDF VSNV+NFDFP
Sbjct: 332 ADGSKLKEEIAGKSDEKPEKDEKKGKKASKLDKESGVSRGIDFHHVSNVVNFDFPETTDA 391
Query: 373 YIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHED 432
YIHR GRTARG N+GTALSF E+ + + + ++N+ +
Sbjct: 392 YIHRVGRTARGFNKGTALSFCIPSERAHL-------------EQIQEEINQQMGRK---- 434
Query: 433 DFIIKPYQFNLDEVKGFEYRAKDA---------------------WRS----NYFEDNPT 467
+++PY+F + E+ F R ++A RS +F N
Sbjct: 435 --VLQPYEFRIKELDTFLLRTREALSKCTKGVIKKARLKEIRQELMRSANLQTFFAKNER 492
Query: 468 DLETLRHDKALYTVRIQS-HLADVPDYIVPPALKKL 502
+ ++ D ++I S +ADV Y+VP AL+ +
Sbjct: 493 EKLLMQTDCHPVMLKINSPAIADVTSYMVPEALRGM 528
>gi|384250759|gb|EIE24238.1| DEAD-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 631
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 168/543 (30%), Positives = 259/543 (47%), Gaps = 101/543 (18%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L A+ K + +PT +Q IP L+ KD++ RARTGSGKT A+ +P + KI+ + + Q
Sbjct: 24 LLALEKRQYEKPTTVQAACIPAALEGKDIVARARTGSGKTLAYLLPALHKILAVPKDKQR 83
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVD-VSVQEPLLVERPDIVV 148
+AL+ P++ELC Q+ + + + +C D++ ++ VD +VQ + + IVV
Sbjct: 84 AGWQALIFVPTRELCEQVREEAEAVATRCKADIRVSSLA--VDSAAVQRDIFLHIGQIVV 141
Query: 149 ATPARALAHLKAKTLDLKS----------SLEIVIIDEADLVFSF-GYEDDMKAVLKFLP 197
+TP + LK L S L ++++DEADL+ S GYEDD++A+ +P
Sbjct: 142 STPGQVAQALKEGRLRAASFQPDERMRRPGLSVLVLDEADLMLSMPGYEDDLRAIAPLIP 201
Query: 198 KLYQAILASATLSEDVLSLKHLILRNPVILKL----------EEPAIAPVSQLAHYHILA 247
+ Q +L SAT SE+V L+ L+L NP L L P +++ H+ I
Sbjct: 202 RSCQCMLMSATSSEEVERLQKLVLHNPTTLNLLGSDADGSGAAGPGPGSAAEIEHFQIAC 261
Query: 248 QEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCH 307
+K LLKL LV+ K ++FVN+++ ++LKL+LE F I +
Sbjct: 262 DRSDKLLHTMVLLKLGLVRKKVLLFVNSINAGFRLKLFLEAFGIRSA------------- 308
Query: 308 AVYQFNQGLYDVIIASDEKA--LET----------PQINSTNNRKRKRDKES-------- 347
+FN+G++D +IA+D+ A LE P+ + R + RD++S
Sbjct: 309 ---EFNKGIFDYLIATDDPAKRLEQEEDAAKPAPLPKPAAVKGRGKGRDRDSRKRGRKTE 365
Query: 348 -----GVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMN 402
GV RGIDFQ V VIN D P +Q Y+HR GRT R GTA+S + + ++
Sbjct: 366 NDNEFGVIRGIDFQGVKTVINVDVPESVQTYVHRVGRTGRAGQAGTAISIFTPADSEVRE 425
Query: 403 DGTALSFVSLREQDLMNDVNEYLMTNLHEDD--FIIKPYQFNLDEVKGFEYRAKDAWRS- 459
EQ L T E+ + + + V+G YRA+D RS
Sbjct: 426 Q---------LEQQLGGQPASTSGTGAEEEQQAGLRRFERLTKASVEGLRYRAEDIARSL 476
Query: 460 ------------------------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIV 495
+FE++P DL L+HDK L SHL +P Y+
Sbjct: 477 TKSSIKEARAKELRLELLNSRRLQAHFEEHPADLALLKHDKPLAKAAAPSHLKHIPAYLK 536
Query: 496 PPA 498
PA
Sbjct: 537 DPA 539
>gi|388583305|gb|EIM23607.1| DEAD-domain-containing protein [Wallemia sebi CBS 633.66]
Length = 605
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 135/300 (45%), Positives = 208/300 (69%), Gaps = 6/300 (2%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+A LG+ PTL+Q +A+PL L KD+L RA+TGSGKT A+ +P+ QK++ K
Sbjct: 23 LRALADLGFARPTLVQAKAVPLALNGKDILARAKTGSGKTLAYLLPIAQKVLAEKDDGDS 82
Query: 90 Q-ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDIS-EQVDVSVQEPLLVERPDIV 147
+ ET+AL+L P++EL Q+ +++ L ++V V+++ D Q LL ++PDIV
Sbjct: 83 KPETRALILVPTRELSEQVSSHLKSLLKYSQKEVSQVNLAGSGTDNKFQRLLLSDKPDIV 142
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLK--FLPKLYQAILA 205
++TP+R + HL++K+L L S+L+ + IDEADL+ S+G+ DD+KA+L +LPK+YQ+ L
Sbjct: 143 ISTPSRLIGHLQSKSLSL-STLKTLAIDEADLILSYGHADDVKALLSGGYLPKIYQSFLM 201
Query: 206 SATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLV 265
SAT+++DV L+ ++LRNP IL LE+ S L Y++ E++K + Y LLKL L+
Sbjct: 202 SATMTQDVEKLRGMVLRNPAILTLEDNE-DDSSNLKQYYVKCPENDKYLLTYVLLKLKLI 260
Query: 266 QGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE 325
+GK I+FVN V++ +KL+L+LE F I VLN ELP +R H V +FN+G+YD +IA+DE
Sbjct: 261 KGKVIMFVNNVERGFKLRLFLEAFGIRAVVLNRELPINSRFHIVQEFNKGVYDYMIATDE 320
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 90/192 (46%), Gaps = 43/192 (22%)
Query: 332 QINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALS 391
Q N +K +KE G+SRGIDF V+ VINFD P + Y HR GRTAR G +L+
Sbjct: 390 QDNKKTKMSKKGEKEFGISRGIDFVDVACVINFDLPKNSSSYTHRVGRTARAGRSGISLT 449
Query: 392 FVSLRE--QDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGF 449
FV E + N+ +S R++ N ++F+ +V+GF
Sbjct: 450 FVVNGETKKSKRNEEKIWKKISKRQERRGGSQN----------------WEFDWKQVEGF 493
Query: 450 EYRAKDAWR-------------------------SNYFEDNPTDLETLRHDKALYTVRIQ 484
+YR DA + +FEDNP D E L+HDK L+ +R Q
Sbjct: 494 KYRVNDALKMVTPNAVKEARVKELKNEILNNDKLKAHFEDNPVDYEFLKHDKPLHPMRQQ 553
Query: 485 SHLADVPDYIVP 496
SHL VP Y++P
Sbjct: 554 SHLKHVPGYLMP 565
>gi|345316817|ref|XP_001516951.2| PREDICTED: probable ATP-dependent RNA helicase DDX56-like
[Ornithorhynchus anatinus]
Length = 353
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 128/254 (50%), Positives = 180/254 (70%), Gaps = 9/254 (3%)
Query: 143 RPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQA 202
R VV TP+R +HL+ L L+ SLE++++DEADL+FSFG+E+++K++L LP++YQA
Sbjct: 23 RRXXVVGTPSRVHSHLQQGGLVLRDSLELLVMDEADLLFSFGFEEELKSLLCHLPRIYQA 82
Query: 203 ILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQ-EDEKATILYTLLK 261
L SAT +EDV +LK L+L NPV LKL+E + +L + +L + E++K +LY LLK
Sbjct: 83 FLMSATFNEDVQALKELVLHNPVTLKLQESQLPGPERLQQFQVLCEAEEDKFLLLYALLK 142
Query: 262 LNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVII 321
L L++GK+++FVNTV++ Y+L+L+LEQF I CVLN ELP ++RCH + QFNQG YD II
Sbjct: 143 LRLLRGKSLLFVNTVERSYRLRLFLEQFSIPACVLNGELPLRSRCHIISQFNQGFYDCII 202
Query: 322 ASDEKALETPQINSTNNRKRKR--DKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGR 379
A+D I RK ++ D E+GV+RGIDF V+ V+NFD P + Y+HRAGR
Sbjct: 203 ATDGV------IRRERARKGEKASDPEAGVARGIDFHNVAAVLNFDLPPSPEAYVHRAGR 256
Query: 380 TARGKNQGTALSFV 393
TAR N GT L+FV
Sbjct: 257 TARADNPGTTLTFV 270
>gi|313222268|emb|CBY39229.1| unnamed protein product [Oikopleura dioica]
Length = 324
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 131/316 (41%), Positives = 202/316 (63%), Gaps = 14/316 (4%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L IA LGW EPT IQE +P+ L+ KD+L +ARTGSGKTGA+ IP++Q+I++ +
Sbjct: 12 LSGIAALGWKEPTEIQEAGLPIALKGKDILAKARTGSGKTGAYLIPIVQRILH------I 65
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T+AL++ P++ELC+Q+ ++EL +KC V ++ +V+ IV+
Sbjct: 66 ASTRALIIGPTRELCSQIEAVVRELCVKCLDVVSIYELGSEVETEADIS-----ASIVIG 120
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L LK++ L L + L ++++DEADL+F FG + + ++ LP Q+ L SATL
Sbjct: 121 TPGRILNALKSERLSL-TELSVMVLDEADLLFGFGNDKMVTEIVSHLPGTQQSFLMSATL 179
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQED-EKATILYTLLKLNLVQGK 268
SE V +K L LRNPV LKL++ ++ L Y I ED EK ++ + LKL +V+GK
Sbjct: 180 SEQVEKIKKLTLRNPVTLKLDDSSLPNAETLQQYQINLNEDFEKYLVILSFLKLRIVRGK 239
Query: 269 TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL 328
+++F ++CYKLKL+L+QF I + VL+SEL A +R +AV QFN+G +DV+IA+D+ L
Sbjct: 240 SLVFACGTNRCYKLKLFLKQFGIPSVVLSSELAAASRHNAVQQFNKGKFDVMIANDQVDL 299
Query: 329 ETPQINSTNNRKRKRD 344
+ +I + K K++
Sbjct: 300 D-EEIEEGEHTKAKKE 314
>gi|145341038|ref|XP_001415623.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144575846|gb|ABO93915.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 583
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 159/518 (30%), Positives = 258/518 (49%), Gaps = 82/518 (15%)
Query: 41 PTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPS 100
PT Q +P+ L+ +DV RA TGSGKT A+ +PM+ K+ + +A + +VL+P+
Sbjct: 9 PTATQRAVVPVALRGRDVCARAPTGSGKTMAYLVPMLDKMC-ARASATASGPRGIVLTPT 67
Query: 101 KELCNQLHKNIQELTMKCSRDVKCVDIS-EQVDVSVQEPLLVERPDIVVATPARALAHLK 159
+EL +Q + C+ ++ ++ +V PD++VATP R +
Sbjct: 68 RELAHQTRRACAAAMRTCAPGMRAGELPVASAGTNVLRETAGSPPDVLVATPTRVAECAR 127
Query: 160 AKTLD---LKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSL 216
L LE+V++DEADL+ SFGY DD+K V+K + + Q ++ SAT+S+++ L
Sbjct: 128 GGYFPPGALGDGLEMVVLDEADLLLSFGYVDDIKCVMKAVKRGTQVMMLSATMSKEIEEL 187
Query: 217 KHLILRNPVIL-----------KLEEPA---IAPVSQLAHY--HILAQEDEKATILY--T 258
+ +I P + K E A P + HY HI D +LY
Sbjct: 188 RDVIAHKPTTIDVDDEEDVDAEKGEAKAGEGAKPGPDIKHYSLHIPKAHDR---LLYVMA 244
Query: 259 LLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYD 318
LL+L L + K ++FV++ D +L+L+L +F + TC L+ ELPA +R H + +FN+G+YD
Sbjct: 245 LLRLGLCKKKALVFVSSADAAVRLRLFLHKFGVPTCALHGELPANSRTHILQEFNRGVYD 304
Query: 319 VIIAS----------------DEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVI 362
++A+ +E+ + P S ++ +RDKE GV RGIDFQ V+ VI
Sbjct: 305 FMVAAADDANMAEPTEEADAVEEQEDKAPTRESKKKKRDRRDKEFGVVRGIDFQAVNTVI 364
Query: 363 NFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVN 422
NF+ P Y+HR GRT R N GTA++ V+ E+ SF +++ + L + V
Sbjct: 365 NFEVPTTAAAYVHRVGRTGRAGNSGTAITLVAPSEEQ--------SFAAIQSK-LASAVG 415
Query: 423 EYLMTNLHEDDFIIKPY-QFNLDEVKGFEYRAKDAWR----------------------- 458
+ + +++P+ + + V YRA+DA R
Sbjct: 416 DAVAATQ-----VMQPFDRLPKEAVDALRYRAEDAARAVGKTAVKEARVRELRQELLNSE 470
Query: 459 --SNYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYI 494
+ +FEDN DL L+HD +L HL+ +P Y+
Sbjct: 471 RLAAHFEDNAEDLALLKHDTSLAKHPDAKHLSHLPGYL 508
>gi|307107419|gb|EFN55662.1| hypothetical protein CHLNCDRAFT_23258 [Chlorella variabilis]
Length = 611
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 173/564 (30%), Positives = 274/564 (48%), Gaps = 94/564 (16%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII-NLKQTAQ 88
L+A++K G+ +PT +Q IP L+ +D++ RARTGSGKT A+ +P + +++ + K A
Sbjct: 13 LRALSKRGFEKPTPVQAECIPKALEGRDIVARARTGSGKTLAYLLPALHRVLASGKGKAG 72
Query: 89 VQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
Q ALVL P++ELC Q+ + + C D+ ++ + +VV
Sbjct: 73 WQ---ALVLVPTRELCEQVREEAASVASLCGADLSATSVAGDAPLRAA---CATAGQLVV 126
Query: 149 ATPARALAHLKAKTLD---LKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILA 205
TPA+ L+ L L+ L+++++DEADL+ S+GYE+D++A+ +P+ Q +L
Sbjct: 127 TTPAKLAQALREGVLTPHMLEERLQVLVLDEADLLLSYGYEEDVQALAPHVPRSTQCLLM 186
Query: 206 SATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHI-----------LAQEDEKAT 254
SAT SEDV L L+L +PV L L A ++ H+ + + EK
Sbjct: 187 SATSSEDVDRLTKLVLHSPVALNLLGQATGEGGEIEHFRVDLPAGCGSGGAATEAAEKLL 246
Query: 255 ILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCH------- 307
L LLKLNLVQ K ++FVN+ D +++L+LE F + VL++ELP +R H
Sbjct: 247 HLLALLKLNLVQRKVLVFVNSADSGMRVRLFLEAFGVPAAVLSAELPLNSRHHILQARPR 306
Query: 308 -----AVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDK----------------- 345
A +FN+GL+D +IA+D+ ST + K++R K
Sbjct: 307 QGWPSAAQEFNRGLFDYLIATDDVHAGDAD-GSTGSSKQQRQKKGSRGDAGGGKGAVGGK 365
Query: 346 ------ESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQD 399
E GV+RGIDF+ V VINF+ P + Y+HR GRT R GTA+S ++ +
Sbjct: 366 RQRKEEEFGVTRGIDFKGVRTVINFEMPGSTKGYVHRVGRTGRAGQAGTAISLLAPSDAP 425
Query: 400 LMNDGTALSFVSLREQD--------LMNDVNEYLMTNLHEDDFIIKPYQ-FNLDEVKGFE 450
L + TA+ LR+ ++P+Q V+G
Sbjct: 426 LAAELTAM----LRDSGGGEAGGDHPAAAAAAGGAAAAAATQAGLQPHQRLTKAAVEGLR 481
Query: 451 YRAKDAWRS---------------------NYFEDNPTDLETLRHDKAL---YTVRIQSH 486
YRA+D RS +FE++P+DL L+HDK L +H
Sbjct: 482 YRAEDVARSITKNARAKELKNELLNSQRLAAFFEEHPSDLNLLKHDKPLAASGAAAAAAH 541
Query: 487 LADVPDYIVPPALKKLARIEDDGD 510
L +P Y+ P L+ + + + G+
Sbjct: 542 LKHIPAYLRDPTLQGKSFVGNSGE 565
>gi|294898598|ref|XP_002776294.1| ATP-dependent RNA helicase DBP9, putative [Perkinsus marinus ATCC
50983]
gi|239883204|gb|EER08110.1| ATP-dependent RNA helicase DBP9, putative [Perkinsus marinus ATCC
50983]
Length = 631
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 172/502 (34%), Positives = 275/502 (54%), Gaps = 54/502 (10%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII-NLKQTAQV 89
+A+ KL + P L+Q RAIP +L++KDVLV+ARTG GKT A+ +P++Q+++ ++
Sbjct: 48 KALNKLQFERPALVQSRAIPPVLESKDVLVKARTGCGKTIAYVVPLLQQLLATAPKSGSR 107
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
A VL P+KELC Q+++ + L + + DV D+ + P P I+V
Sbjct: 108 HPLTAFVLVPTKELCVQVNQVVNSL-LHYAFDVISCDMH-----TTTHPYRKALPSILVC 161
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TPA L+ LK++ +L +++ ++IDEADL+ S+GYE+D+K VL +L + YQ +L SATL
Sbjct: 162 TPAACLSVLKSRK-ELGPTIKHLVIDEADLMLSYGYEEDIKGVLGYLDR-YQCMLLSATL 219
Query: 210 SEDVLSLKHLILRNPVILKLEEP---AIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQ 266
++DV +LK L L PVI+KLEE A A L +++ + DEK ++Y LLKL L+
Sbjct: 220 NDDVETLKGLCLHKPVIVKLEEAESGAAAGEGHLKQFYLPLRPDEKYLVVYGLLKLKLLV 279
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKI-STCVLNSELPAKARCHAVYQFNQGLYDVIIASDE 325
GKT+IF +D Y+ KL L++F + S VLN ELP +R + FN DV+IA+++
Sbjct: 280 GKTLIFAKDIDSAYRYKLLLDKFSMGSVAVLNYELPFLSRNQIIESFNMNAIDVLIATNQ 339
Query: 326 KALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKN 385
+ +E + RG+DF V V+N D P + Y+HR GRTARG
Sbjct: 340 AVSGSGA------------EEQAIHRGLDFVDVKAVLNADMPDTAREYVHRVGRTARGGA 387
Query: 386 QGTALSFVSLREQ----------------DLMNDGTALSFVSLREQDLMNDVNEYLMTNL 429
GTAL+ V EQ L D + L+ + R +D+ + + + + +L
Sbjct: 388 NGTALTLVDDVEQWQEVLAEIEEAGVEIEALPLDISELNSLKYRVEDVSHSITKKAVASL 447
Query: 430 HEDDFIIKPYQFNLDEVKGFEYRAKDAWRSNYFEDNPTDLETLRHDKA-LYTVRIQSHLA 488
+ + + + + + K + N ED ++LR + A + I+ L
Sbjct: 448 RQSELMREVLHSD---------KMKQQLQENT-EDAKALRKSLRQNNAKVAGSTIKKSLK 497
Query: 489 DVPDYIVPPALKKLARIEDDGD 510
D+P+Y+VP + L +++DGD
Sbjct: 498 DLPEYLVPQSF--LNSLDEDGD 517
>gi|308799543|ref|XP_003074552.1| RNA helicase (ISS) [Ostreococcus tauri]
gi|116000723|emb|CAL50403.1| RNA helicase (ISS) [Ostreococcus tauri]
Length = 1934
Score = 238 bits (606), Expect = 8e-60, Method: Composition-based stats.
Identities = 157/510 (30%), Positives = 262/510 (51%), Gaps = 71/510 (13%)
Query: 41 PTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPS 100
PT +Q RAIPL L+ + V+VR+ TGSGKT ++ P++ + + + + +A+V +P+
Sbjct: 38 PTAVQRRAIPLALEGRSVVVRSSTGSGKTMSYVAPIVHALCG-TASERKRGLRAIVFAPT 96
Query: 101 KELCNQLHKNIQELTMKCSRDVKCVDI-SEQVDVSVQEPLLVERPDIVVATPARALAHLK 159
+EL Q+ + T C+ + ++ + SV P+I+V+TPAR ++
Sbjct: 97 RELARQVRRACASTTRLCAPGCRVGELPAPSAGTSVLRETAGSPPEILVSTPARVAECVR 156
Query: 160 AKTLD---LKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSL 216
L+ LE V++DE DL+ SFGY DD+K+V+K + + + ++ SATLS +V L
Sbjct: 157 GGYFPPGALEEELETVVLDEVDLLLSFGYVDDIKSVMKPVKRGTRVMMLSATLSPEVEEL 216
Query: 217 KHLILRNPVILKLEEPAIA-------------PVSQLAHYHI-LAQEDEKATILYTLLKL 262
+ ++ P + +E+ A ++HY + +A+ ++ LL+L
Sbjct: 217 RDVVAHKPTTIDVEDEEAAMKEEGDDQDDGKPSAPNISHYSLEIAKSSDRLLYTMALLRL 276
Query: 263 NLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIA 322
L + K ++FV+ D +L+L+L +F + TC L+SELPA +R H + +FN+G+YD ++A
Sbjct: 277 GLCKKKVLVFVSNADAAVRLRLFLHKFGVPTCALHSELPANSRAHILQEFNRGVYDFMVA 336
Query: 323 SDEKAL------------ETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDI 370
+ + A + P S +K +RDKE GV RGIDFQ V VINF+ P
Sbjct: 337 AADDARVATEVEEEEEEDKAPTRESKKKKKDRRDKEFGVVRGIDFQAVGTVINFEVPATA 396
Query: 371 QCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLH 430
Y+HR GRT R GTA++ VS E++ +F ++E DL++ V + +
Sbjct: 397 AAYVHRVGRTGRAGKSGTAITIVSPTEEE--------AFKQIQE-DLVSTVGDTVAATQ- 446
Query: 431 EDDFIIKPY-QFNLDEVKGFEYRAKDAWR-------------------------SNYFED 464
+I+P+ + + V YRA+DA R + +FED
Sbjct: 447 ----VIQPFDRLPKEAVDALRYRAEDAARAVGKTAVKEARVRELKQELLNSERLAAHFED 502
Query: 465 NPTDLETLRHDKALYTVRIQSHLADVPDYI 494
N DL L+HD +L HL+ +P Y+
Sbjct: 503 NADDLALLKHDSSLSKNPDAKHLSHLPGYL 532
>gi|361130742|gb|EHL02492.1| putative ATP-dependent RNA helicase dbp9 [Glarea lozoyensis 74030]
Length = 764
Score = 232 bits (592), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 144/364 (39%), Positives = 197/364 (54%), Gaps = 64/364 (17%)
Query: 196 LPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAP--VSQLAHYHILAQEDEKA 253
+PK Q +L SATL+ +V +LK L RNPV+LKLEE A VSQ + A EDEK
Sbjct: 1 MPKGVQTVLMSATLTSEVETLKGLFCRNPVVLKLEEAEEAGEGVSQYTVNYRCA-EDEKF 59
Query: 254 TILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFN 313
+LY + KL L++GK IIFV +D+CY+LKLYLEQF I +C+LNSELP +R H V +FN
Sbjct: 60 LLLYVIFKLKLIKGKCIIFVGDIDRCYRLKLYLEQFGIRSCILNSELPVNSRIHVVEEFN 119
Query: 314 QGLYDVIIASDEK-------------------ALETPQINSTNNRKR------------K 342
+ +YD+IIASDE A ET + ++ + R +
Sbjct: 120 KNVYDIIIASDEHEVLGDEEEEKTEDAEEKADAGETKEADAEEAKSRSKEPSKKKRRVVE 179
Query: 343 RDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMN 402
+DK+ GVSRGIDF+ ++ V+NFD P + Y HR GRTAR G ALSFV +Q +
Sbjct: 180 KDKDYGVSRGIDFKNLACVLNFDLPTSSKSYTHRIGRTARAGQTGMALSFVIPADQYRKH 239
Query: 403 DGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS--- 459
T++ E+ L +M + + +KPY F++ +V+ F YR DA R+
Sbjct: 240 IPTSIESAKDDEKVLAK-----IMRHQLKKGKEVKPYNFDMKQVEAFRYRMSDALRAVTR 294
Query: 460 ----------------------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPP 497
+FE+NP DL LRHD L R+QSHL VPDY++P
Sbjct: 295 VAIREARTRELRQELMKSEKLKRHFEENPGDLHHLRHDGELRAARVQSHLKHVPDYLLPE 354
Query: 498 ALKK 501
+K
Sbjct: 355 GGRK 358
>gi|294894908|ref|XP_002775012.1| ATP-dependent RNA helicase HAS1, putative [Perkinsus marinus ATCC
50983]
gi|239880795|gb|EER06828.1| ATP-dependent RNA helicase HAS1, putative [Perkinsus marinus ATCC
50983]
Length = 590
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 168/488 (34%), Positives = 264/488 (54%), Gaps = 65/488 (13%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII-NLKQTAQV 89
+A+ KL + P L+Q RAIP +L++KDVLV+ARTG GKT A+ +P++Q+++ ++
Sbjct: 46 KALNKLQFERPALVQSRAIPPVLESKDVLVKARTGCGKTIAYVVPLLQQLLATAPKSGSR 105
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
A VL P+KELC Q+++ + L + + DV D+ + P P I+V
Sbjct: 106 HPLTAFVLVPTKELCVQVNQVVNSL-LHYAFDVISCDMH-----TTTHPYRKALPTILVC 159
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TPA L+ LK++ DL +++ ++IDEADL+ S+GYE+D+K VL +L + YQ +L SATL
Sbjct: 160 TPAACLSVLKSRK-DLGPTIKHLVIDEADLMLSYGYEEDIKGVLGYLDR-YQCMLLSATL 217
Query: 210 SEDVLSLKHLILRNPVILKLEEP---AIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQ 266
++DV +LK L L PVI+KLEE A A L +++ + DEK ++Y LLKL L+
Sbjct: 218 NDDVETLKGLCLHKPVIVKLEEAESGAAAGEGHLKQFYLPLRPDEKYLVVYGLLKLKLLV 277
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKI-STCVLNSELPAKARCHAVYQFNQGLYDVIIASDE 325
GKT+IF +D Y+ KL L++F + S VLN ELP +R + FN DV+IA+++
Sbjct: 278 GKTLIFAKDIDSAYRYKLLLDKFSMGSVAVLNYELPFLSRNQIIESFNMNAIDVLIATNQ 337
Query: 326 KALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK- 384
+ +E + RG+DF V V+N D P + Y+HR GRTAR
Sbjct: 338 AVSGSGA------------EEQAIHRGLDFVDVKAVLNADMPDTAREYVHRVGRTARACC 385
Query: 385 -NQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNL 443
GT + + + + +LR+ +LM +V LH D + + Q N
Sbjct: 386 IXXGTTVGHFGTEQLE--------AVAALRQSELMREV-------LHSDK-MKQQLQENT 429
Query: 444 DEVKGFEYRAKDAWRSNYFEDNPTDLETLRHDKA-LYTVRIQSHLADVPDYIVPPALKKL 502
++ K ++LR + A + I+ L D+P+Y+VP + L
Sbjct: 430 EDAKALR-------------------KSLRQNNAKVAGSTIKKSLKDLPEYLVPQSF--L 468
Query: 503 ARIEDDGD 510
+++DGD
Sbjct: 469 NSLDEDGD 476
>gi|171682130|ref|XP_001906008.1| hypothetical protein [Podospora anserina S mat+]
gi|170941024|emb|CAP66674.1| unnamed protein product [Podospora anserina S mat+]
Length = 320
Score = 228 bits (581), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 113/264 (42%), Positives = 176/264 (66%), Gaps = 2/264 (0%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
+QA+AKLG+ +PTL+Q RAIPL L +DVL +A+TGSGKT A+ +P++Q I+ K+T
Sbjct: 55 VQAVAKLGFEKPTLVQRRAIPLALNGEDVLCKAKTGSGKTAAYVLPVLQGILGRKKTDNT 114
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T L+L P++EL +Q+HK I+E + C++DV ++E V +VQ LL PD+VV+
Sbjct: 115 PTTAGLILVPTRELADQVHKAIEEFSAFCAKDVTAAKLTENVSDAVQRSLLANVPDVVVS 174
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT- 208
TPARA + + L + ++L+ +++DEADLV S+GY++DM+ + + +PK Q + SAT
Sbjct: 175 TPARAWKSVDSGALSV-ANLQYLVLDEADLVLSYGYDEDMENLARSMPKGVQTTMMSATL 233
Query: 209 LSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGK 268
LS ++ +LK + RNP +L L+E +L Y++ ED+K I Y + KL L++G
Sbjct: 234 LSAELDTLKGIFCRNPTLLDLKEEFGEEDEKLTQYYVRTGEDDKWLITYLIFKLQLIKGP 293
Query: 269 TIIFVNTVDKCYKLKLYLEQFKIS 292
+IFV +D+ Y+LKL+ EQF I
Sbjct: 294 CLIFVADIDRSYRLKLFFEQFSIG 317
>gi|116787621|gb|ABK24578.1| unknown [Picea sitchensis]
Length = 465
Score = 225 bits (573), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 159/418 (38%), Positives = 220/418 (52%), Gaps = 69/418 (16%)
Query: 140 LVERPDIVVATPARALAHLKAKTL----DLKSSLEIVIIDEADLVFSFGYEDDMKAVLKF 195
+V PDIVVATPA +A +K + L+ SL +++DEADL+ S+GYE D+K+++
Sbjct: 1 MVGPPDIVVATPA-CIATCISKNILQSSSLEESLSTLVLDEADLLLSYGYEQDLKSLVHH 59
Query: 196 LPKLYQAILASATLSEDVLSLKHLILRNPVILKLEE------PAIAPVSQLAHYHILAQE 249
+P+ Q IL SAT S DV +K L+L +PVIL L E + P S + + I
Sbjct: 60 IPRRCQCILMSATSSADVEKIKKLVLHSPVILTLTEVEGNEYNGVVPNS-VQQFWISCDV 118
Query: 250 DEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAV 309
+K + LLKL LVQ K +IFVN++D ++LKL+LEQF I + VLNSELP +R H +
Sbjct: 119 HDKLLYILALLKLELVQKKALIFVNSIDTGFRLKLFLEQFGIKSAVLNSELPQNSRLHML 178
Query: 310 YQFNQGLYDVIIASDE--------KALETPQINSTNNRKRKR---DKESGVSRGIDFQFV 358
+FN G +D +IA D+ + +E N +RKR + D E GV RGIDF+ V
Sbjct: 179 EEFNAGSFDYLIAIDDSKPEKVENEPIEKRMANHKGSRKRHKRSFDSEFGVVRGIDFKNV 238
Query: 359 SNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLM 418
VINFD PL+ YIHR GRT R + G ++S VS E D+ + ++ +E D
Sbjct: 239 RTVINFDMPLNPSGYIHRIGRTGRAYSTGASVSLVSPSEDDVFRE-IKVALSGGKELDT- 296
Query: 419 NDVNEYLMTNLHEDDFIIKPYQ-FNLDEVKGFEYRAKDAWRS------------------ 459
E I P+ + V+ YRA+D +S
Sbjct: 297 ------------ESTKFISPFPLLTKNAVESLRYRAQDIAQSITKVAVKEARANELRNEI 344
Query: 460 -------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPPALK------KLAR 504
+FEDNP DLE L+HDK L R SHL +PDY+V P + KLAR
Sbjct: 345 LNSERLKAHFEDNPKDLELLKHDKVLSKKRPSSHLCAIPDYLVDPTTEVASKAIKLAR 402
>gi|209882032|ref|XP_002142453.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
gi|209558059|gb|EEA08104.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
Length = 615
Score = 219 bits (558), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 145/447 (32%), Positives = 246/447 (55%), Gaps = 44/447 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
+QA+ G++ PT +Q AI L+++ KDVL+ ++TGSGKT AF IP+ +++ + +
Sbjct: 17 VQALNSQGFVYPTKVQSDAIGLVIEGKDVLINSKTGSGKTLAFIIPICHNLLSNQNSGS- 75
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVD-ISEQVDVSVQEPLLVERPDIVV 148
K L+L PS+EL NQ++ + + C ++ ISE S + + +IV+
Sbjct: 76 -RMKVLILVPSRELVNQVYDVLLSVIRYCGNKIRISHLISENSSWS-----YISKCNIVI 129
Query: 149 ATPARAL-AHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLP----KLYQAI 203
+TP + + + K + ++ +++DEADL+F+FGYE M+ +L+ LP K YQ I
Sbjct: 130 STPYDIVNSSDQDKKVKWLCNVSCLVVDEADLLFAFGYEKYMEIILELLPNSAGKKYQCI 189
Query: 204 LASATLSEDVLSLKHLILRNPVILK----------LEEPAIAPVSQLAHYHI-LAQEDEK 252
SATLS+++ L +L P+ + L++ +I + L Y++ + EK
Sbjct: 190 FCSATLSKNLKLLNSKLLHKPICVNEISQANEKSVLDKSSIEGI--LKEYYVNCSNITEK 247
Query: 253 ATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQF 312
+LY L K+ ++ K +IF +++D Y ++L+L++F IS +++ LP R + F
Sbjct: 248 WLMLYVLFKMQVIPIKCLIFASSIDMAYSIRLFLDKFDISAGIMSPILPFSTRQLIIQYF 307
Query: 313 NQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQC 372
NQG D++I +D E +I++ + + KE+ RGID+Q VS+V+NFD P ++
Sbjct: 308 NQGTIDILITADITN-ELDEISTKDILSSAKSKEAVAYRGIDYQGVSSVLNFDCPTSVRS 366
Query: 373 YIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHED 432
YIHR GRTARG + GTA++F++ +D+ ND L + R N + D
Sbjct: 367 YIHRIGRTARGNSSGTAITFIN---KDIPNDVELLQLLIAR--------------NKYND 409
Query: 433 DFIIKPYQFNLDEVKGFEYRAKDAWRS 459
D I+P F +V F YR +D +S
Sbjct: 410 DKGIEPLDFGPHDVSCFNYRIEDCLKS 436
>gi|260817770|ref|XP_002603758.1| hypothetical protein BRAFLDRAFT_59676 [Branchiostoma floridae]
gi|229289081|gb|EEN59769.1| hypothetical protein BRAFLDRAFT_59676 [Branchiostoma floridae]
Length = 199
Score = 218 bits (554), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 99/167 (59%), Positives = 133/167 (79%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AIA GW PTLIQERAIPL L+ KD+L RARTGSGKT AF IP+IQ+I++ KQ A+
Sbjct: 21 LKAIASQGWRHPTLIQERAIPLALEGKDLLARARTGSGKTAAFVIPIIQRILDGKQAAKE 80
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
Q KALVL+PSKELC+Q +KN L+ CSR+V+C+D+S D++ Q P+L+E+PDIV+
Sbjct: 81 QAVKALVLTPSKELCSQAYKNAVALSSCCSREVRCLDVSGTTDITSQRPMLMEKPDIVIG 140
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFL 196
TP+R LAH++ L+L+ SLE+++IDEADLVFSFGYE D+K +L ++
Sbjct: 141 TPSRVLAHIQGGNLELQQSLEMLVIDEADLVFSFGYEKDIKTLLGYV 187
>gi|358341847|dbj|GAA49424.1| ATP-dependent RNA helicase DDX56/DBP9, partial [Clonorchis
sinensis]
Length = 564
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 117/270 (43%), Positives = 178/270 (65%), Gaps = 12/270 (4%)
Query: 32 AIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQE 91
A+ LGW +PT +Q+ IPL+ + K ++V+ARTGSGKT AFA+P++ ++ KQ Q
Sbjct: 277 AVFDLGWDKPTDVQQAVIPLMFERKSIVVQARTGSGKTAAFALPVLNFLLQEKQLQTRQT 336
Query: 92 TKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATP 151
T LVL+PSKELC+Q +KN + L S++V +D+S+ DV + PLLVE PDIV+ TP
Sbjct: 337 TTVLVLAPSKELCSQAYKNFRLLCKYASKNVSFIDVSQYHDVEILRPLLVENPDIVIGTP 396
Query: 152 ARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL-YQAILASATLS 210
AR L+HL++ + L +SL+ ++IDEADL+F+FGY+ +++ + F P +Q +L SATL
Sbjct: 397 ARILSHLRSGHITL-ASLKQLVIDEADLIFTFGYQTEIEEIRGFFPTTPFQIVLMSATLD 455
Query: 211 EDVLSLKHLILRNP--VILKLEEPAIAPV-SQLAHY-------HILAQEDEKATILYTLL 260
+ L+ +++ V ++L E A P SQL Y I A+E++K TIL L+
Sbjct: 456 DTTKILRRCLVKGGDWVRVELPEEAFLPSDSQLTQYIIRQVTIAICAEEEDKYTILIALV 515
Query: 261 KLNLVQGKTIIFVNTVDKCYKLKLYLEQFK 290
KL L++GKT+IF N+VD+C+KL L + +
Sbjct: 516 KLKLIRGKTLIFTNSVDRCFKLVTLLRKIR 545
>gi|449017498|dbj|BAM80900.1| similar to RNA helicase [Cyanidioschyzon merolae strain 10D]
Length = 552
Score = 216 bits (549), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 164/540 (30%), Positives = 266/540 (49%), Gaps = 72/540 (13%)
Query: 35 KLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINL-----KQTAQV 89
KL W P +QE IP +L KDVLV A TGSGKTGA+A+P++ ++ + + A
Sbjct: 25 KLRWRTPAPVQEAVIPAVLSGKDVLVNAPTGSGKTGAYALPLVHLLLQIYDEENARGAWC 84
Query: 90 QETKALVLSPSKELCNQLHKNIQELT----MKCSRDVKCVDISEQVDVSVQEPLLVER-- 143
+ T+A+VL PS++L QL + LT + C CV V + L++
Sbjct: 85 ESTRAIVLVPSQDLALQLGRTFVSLTENLPLHC-----CV-----VTGAFSNKALIDTWT 134
Query: 144 -PDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYE-DDMKAVLKFLPKLYQ 201
+ V TPA LA ++ T + ++ +++IDEADLV SF + V++ +P Q
Sbjct: 135 DASVCVGTPA-GLA--QSLTTERARNVVLLVIDEADLVLSFASSATQVHDVVRKIPTNAQ 191
Query: 202 AILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVS---QLAHYHI--LAQEDEKATIL 256
+L SATL E+V +L+ L L P ++E A S Y + L+ DE+ L
Sbjct: 192 GVLLSATLDEEVEALRALALHQPEACRIEASWDADPSGNKSNVQYWVSRLSGLDERFAWL 251
Query: 257 YTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGL 316
Y +L+L +++ + ++FV++V + Y++KL+L++F I VLN++LP +R H + QF+ G+
Sbjct: 252 YVVLRLRILRDRILVFVDSVLEAYRVKLFLDRFGIRCAVLNADLPVTSRQHCLQQFDAGI 311
Query: 317 YDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHR 376
+D+++ SDE + ST SRG+DF+ V VI+F P +I+ ++HR
Sbjct: 312 FDILVTSDEAT----TLKSTGY---------SASRGLDFRSVDVVIHFTAPKNIEVFLHR 358
Query: 377 AGRTARGKNQGTALSFVSL--REQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHE--D 432
+GRT R G ++ V+ Q + T + +S++ Q + V + M +
Sbjct: 359 SGRTGRAGRAGKVVTLVTNDDESQRIERFFTEHARLSMQGQPRLLAVRKETMETFRYRVE 418
Query: 433 DFIIKPYQFNLDEVKGFEYRAKDAWRSNYFED--------NPTDLETLRHDKALYTVRIQ 484
D + + E + R + RS F D + DLE L HD+ L R+
Sbjct: 419 DALCACTDLAVREARVQALR-DEMLRSRAFRDALLAARQGDRVDLEVLSHDRPLVRKRLA 477
Query: 485 SHLADVPDY---------IVPPALKKLARIEDDGDEDVRAEPITDEEYNKQYEEYKKRSK 535
+HL +PDY ++ P + DD P EE NK E+ KR +
Sbjct: 478 AHLGHIPDYMLKDDGLWQVLAPEMANAQSATDD------LRPAGPEELNKPVEKRPKRKR 531
>gi|66359422|ref|XP_626889.1| Dbp9p, eIF4A-1-family RNA SFII helicase, DEXDc+HELICc
[Cryptosporidium parvum Iowa II]
gi|46228356|gb|EAK89255.1| Dbp9p, eIF4A-1-family RNA SFII helicase, DEXDc+HELICc
[Cryptosporidium parvum Iowa II]
Length = 664
Score = 215 bits (548), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 161/526 (30%), Positives = 260/526 (49%), Gaps = 94/526 (17%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
+Q++ +L PT +Q I I++ KD+L+ + TGSGKT A+AIP+ ++N+
Sbjct: 29 IQSLTNSNYLVPTKVQVEVIKKIIEGKDLLINSYTGSGKTLAYAIPICHNLLNISNRL-A 87
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVE----RPD 145
+ +LVL PS+EL Q H+ ++L + C +V I D + + ++ R +
Sbjct: 88 NKVYSLVLVPSRELVIQTHEIFEQLLVFCENNVSVGTIFNADDNLLHKGKDLKYGSFRYN 147
Query: 146 IVVATPARALAHLKAKTLDLKSSL----EIVIIDEADLVFSFGYEDDMKAVLKFLP---- 197
I+++TP L AK + K S+ ++IDEADL+F+FGY+ DM VL LP
Sbjct: 148 ILISTPGDILC---AKGMGSKESIFQNIAHLVIDEADLLFAFGYDKDMSKVLDLLPNSQD 204
Query: 198 KLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAI-------------APVSQL--AH 242
+ YQ IL SATL+++V SLK ++L P+ + ++ P I S L +
Sbjct: 205 RKYQCILLSATLNKEVDSLKKMVLHRPIFVDIK-PEIKEDYFDQEGNDSKCQTSGLLSEY 263
Query: 243 YHILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPA 302
Y I +K +LY LLK+N++ K +IFV+ VD Y +KL+LE+F +S VL +PA
Sbjct: 264 YTICDSMVDKWLMLYILLKMNVIPRKCLIFVSEVDTAYSIKLFLERFGMSCGVLTPIIPA 323
Query: 303 KARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVS-RGIDFQFVSNV 361
R + FNQG YD+++ SD IN + K++ ++ RG+D++ V++V
Sbjct: 324 ATRRMLIQCFNQGSYDILVTSD-------TINEKDESVLSILKDNSITYRGVDYKEVASV 376
Query: 362 INFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDV 421
NFD P ++ YIH GRTARG + G +++ V+ ++ N+ L +L+ND
Sbjct: 377 FNFDCPSSVRSYIHHIGRTARGGSSGVSITIVN---SNIPNEMEVL-------DELLNDS 426
Query: 422 NEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWR----------------------- 458
N + + +EV F YR +D R
Sbjct: 427 NRKM-----------NKLKITSEEVACFRYRIEDCMRILTKGNIQRHKLQEIQGLILNNT 475
Query: 459 ----SNYFEDNPTDLETLR--HDKALYTVRIQS----HLADVPDYI 494
S YF +P D L+ H + I + H+ ++PDY+
Sbjct: 476 RLLKSGYFSKHPGDKNVLKSYHKHITNALNISNSGREHIKNIPDYL 521
>gi|67623801|ref|XP_668183.1| ENSANGP00000021948 [Cryptosporidium hominis TU502]
gi|54659367|gb|EAL37947.1| ENSANGP00000021948 [Cryptosporidium hominis]
Length = 661
Score = 214 bits (545), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 160/526 (30%), Positives = 261/526 (49%), Gaps = 94/526 (17%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
+Q++ +L PT +Q I I++ KD+L+ + TGSGKT A+AIP+ ++N+ +
Sbjct: 26 IQSLTNNNYLVPTKVQVEVIKKIIEGKDLLINSYTGSGKTLAYAIPICHNLLNISNRS-A 84
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVE----RPD 145
+ +LVL PS+EL Q H+ ++L + C +V I D + + ++ R +
Sbjct: 85 NKVYSLVLVPSRELVIQTHEVFEQLLVFCENNVSVGTIFNADDNLLHKGKDLKYGSFRYN 144
Query: 146 IVVATPARALAHLKAKTLDLK----SSLEIVIIDEADLVFSFGYEDDMKAVLKFLP---- 197
I+++TP L AK + K ++ ++IDEADL+F+FGY+ DM VL LP
Sbjct: 145 ILISTPGDILC---AKGMGSKEMIFQNIAHLVIDEADLLFAFGYDKDMSKVLDLLPNSQD 201
Query: 198 KLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAP-------------VSQL--AH 242
+ YQ IL SATL+++V SLK ++L P+ + ++ P I S L +
Sbjct: 202 RKYQCILLSATLNKEVDSLKKMVLHRPIFVDIK-PEIKEDDFNQEGNDSKYQTSGLLSEY 260
Query: 243 YHILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPA 302
Y I +K +LY LLK+N++ K +IFV+ VD Y +KL+LE+F +S VL +PA
Sbjct: 261 YTICDNMVDKWLMLYILLKMNVIPRKCLIFVSEVDTAYSIKLFLERFGMSCGVLTPIIPA 320
Query: 303 KARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVS-RGIDFQFVSNV 361
R + FNQG YD+++ SD IN + K++ ++ RG+D++ V++V
Sbjct: 321 ATRRMLIQCFNQGSYDILVTSD-------TINEKDESVLSILKDNSITYRGVDYKEVASV 373
Query: 362 INFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDV 421
NFD P ++ YIH GRTARG + G +++ V+ ++ N+ L +L+ND
Sbjct: 374 FNFDCPSSVRSYIHHIGRTARGGSSGVSITIVN---SNIPNEMEVL-------DELLNDS 423
Query: 422 NEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWR----------------------- 458
N + + +EV F YR +D R
Sbjct: 424 NRKM-----------NKLKITSEEVACFRYRIEDCMRILTKGNIQRHKLQEIQGLILNNT 472
Query: 459 ----SNYFEDNPTDLETLR--HDKALYTVRIQS----HLADVPDYI 494
S YF +P D L+ H + I + H+ ++PDY+
Sbjct: 473 RLLKSGYFSKHPGDKNVLKSYHKHITNALNISNSGREHIKNIPDYL 518
>gi|261334450|emb|CBH17444.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
gambiense DAL972]
Length = 601
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 150/455 (32%), Positives = 219/455 (48%), Gaps = 71/455 (15%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTA-- 87
++AI KL W PT +Q IPL ++ +D+ ++++TG+GKTGAF IP+IQ+II + A
Sbjct: 23 VEAIKKLKWKAPTPVQSACIPLAMKGRDLAIQSQTGTGKTGAFLIPVIQRIITENERACG 82
Query: 88 --QVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPD 145
Q AL+L PS+ELC Q + LT + D++ +V S L +
Sbjct: 83 RRNAQNPVALILLPSEELCKQTVEVANALTRYVKPRIIVNDLTSRV--STANALRLTAAP 140
Query: 146 IVVATPAR--ALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAI 203
I+V+T A L + T D L V+IDEADL+ S E ++AV LP Q I
Sbjct: 141 ILVSTAASLGKLCRNGSVTSDDMKPLRCVVIDEADLIMSIA-EGSLRAVQSVLPTSAQTI 199
Query: 204 LASATLSEDVLSLKHLILRNPVILKLE------EP----------------------AIA 235
LASATL++ V +K +L NP+ + L+ EP A
Sbjct: 200 LASATLTDGVAQIKGQLLHNPITVSLKPDDGEKEPTGCEGPVGAEDVVLESRVTVRGGAA 259
Query: 236 PVSQLAHYHILAQED-EKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTC 294
L HY++++ ++ T+LY L +L ++GKT++FVN+ D YKL +L Q I+
Sbjct: 260 AAGTLRHYYLVSTDECHHHTLLYALYRLGHIKGKTLVFVNSEDTTYKLHNFLAQLGINAL 319
Query: 295 VLNSELPAKARCHAVYQFNQGLYDVIIASD-----------------EKALETPQINSTN 337
V +S LP R A+ +F G ++ +D E TP+ NS
Sbjct: 320 VYDSNLPMNVRVDALRRFQTGKVGTLVCTDGTLESLDRMRGATDGDEETTTSTPRSNSRG 379
Query: 338 NRKR----KRDKESGVSRGIDFQFVSNVINFDF-----PLDIQCYIHRAGRTARGKNQGT 388
RK + S + RGIDF VSNVI FD D Y HR GR RG G
Sbjct: 380 KRKSLAAGGDEGGSALHRGIDFSDVSNVILFDGVTNATTSDFSRYTHRVGRAGRGNKDGV 439
Query: 389 ALSFVSLRE-----QDLMN--DGTALSFVSLREQD 416
A++F++L + Q L + GT SF ++ D
Sbjct: 440 AITFLTLHQARKVKQQLRDYLGGTFQSFAPFKQLD 474
>gi|71755317|ref|XP_828573.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|70833959|gb|EAN79461.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
Length = 601
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 150/455 (32%), Positives = 219/455 (48%), Gaps = 71/455 (15%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTA-- 87
++AI KL W PT +Q IPL ++ +D+ ++++TG+GKTGAF IP+IQ+II + A
Sbjct: 23 VEAIKKLKWKAPTPVQSACIPLAMKGRDLAIQSQTGTGKTGAFLIPVIQRIITENERACG 82
Query: 88 --QVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPD 145
Q AL+L PS+ELC Q + LT + D++ +V S L +
Sbjct: 83 RRNAQNPVALILLPSEELCKQTVEVANALTRYVKPRIIVNDLTSRV--STANALRLTAAP 140
Query: 146 IVVATPAR--ALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAI 203
I+V+T A L + T D L V+IDEADL+ S E ++AV LP Q I
Sbjct: 141 ILVSTAASLGKLCRNGSVTSDDMKPLRCVVIDEADLIMSIA-EGSLRAVQSVLPTSAQTI 199
Query: 204 LASATLSEDVLSLKHLILRNPVILKLE------EP----------------------AIA 235
LASATL++ V +K +L NP+ + L+ EP A
Sbjct: 200 LASATLTDGVAQIKGQLLHNPITVSLKPDDGEKEPTGCEGPVGAEDVVLESRVTVRGGAA 259
Query: 236 PVSQLAHYHILAQED-EKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTC 294
L HY++++ ++ T+LY L +L ++GKT++FVN+ D YKL +L Q I+
Sbjct: 260 AAGTLRHYYLVSTDECHHHTLLYALYRLGHIKGKTLVFVNSEDTTYKLHNFLAQLGINAL 319
Query: 295 VLNSELPAKARCHAVYQFNQGLYDVIIASD-----------------EKALETPQINSTN 337
V +S LP R A+ +F G ++ +D E TP+ NS
Sbjct: 320 VYDSNLPMNVRVDALRRFQTGKVGTLVCTDGTLESLDRMRGATDGDEETTTSTPRSNSRG 379
Query: 338 NRKR----KRDKESGVSRGIDFQFVSNVINFDF-----PLDIQCYIHRAGRTARGKNQGT 388
RK + S + RGIDF VSNVI FD D Y HR GR RG G
Sbjct: 380 KRKSLAAGGDEGGSALHRGIDFSDVSNVILFDGVTNATTSDFSRYTHRVGRAGRGNKDGV 439
Query: 389 ALSFVSLRE-----QDLMN--DGTALSFVSLREQD 416
A++F++L + Q L + GT SF ++ D
Sbjct: 440 AITFLTLHQARKVKQQLRDYLGGTFQSFAPFKQLD 474
>gi|342185613|emb|CCC95097.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 598
Score = 204 bits (519), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 147/432 (34%), Positives = 224/432 (51%), Gaps = 72/432 (16%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII-NLKQTAQ 88
++A+ +L W PT +Q IPL L+ +D+++++RTG+GKTGAF IP+IQ+II + ++
Sbjct: 23 VEAVKRLKWSTPTPVQSACIPLALKGRDLMIQSRTGTGKTGAFLIPIIQRIITDSERVGG 82
Query: 89 VQETK---ALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVER-- 143
+ TK AL+L PS+ELC Q E+ +R VK I D++++ P R
Sbjct: 83 GRSTKCPLALILLPSEELCKQ----TVEVANALARYVKPRIIVN--DLTLRGPTTGMRLA 136
Query: 144 PDIVVATPARALAHL----KAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199
+V T A AL L + +LK L V+IDEADL+ S E+ ++ V +P
Sbjct: 137 AAPIVITTAAALGKLCRSGGVASEELKP-LRCVVIDEADLIISIA-ENSLRLVQSLIPPS 194
Query: 200 YQAILASATLSEDVLSLKHLILRNPVILKL----EEPAIAPV------------------ 237
Q ILASATL++ V+ +K +LRNPV + L EP AP
Sbjct: 195 TQTILASATLTDGVVHVKGQLLRNPVTISLNPDNREPPGAPALADSENIVLESRVTVRGA 254
Query: 238 ----SQLAHYHILAQED-EKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKIS 292
+L+HY+++A ++ T+LY L +L +QGKT++FVN+ D YKL +LEQ +S
Sbjct: 255 GADGGKLSHYYLVATDECHHHTLLYALYRLGHIQGKTLVFVNSEDTTYKLHSFLEQLGVS 314
Query: 293 TCVLNSELPAKARCHAVYQFNQGLYDVIIASD----------EK----ALETPQINSTNN 338
V +S LP R A+++F G ++ +D EK E + + N+
Sbjct: 315 ALVYDSNLPMNVRIDALHRFQTGAVGTLVCTDGTLECLDQLQEKGNVAGSEVAEATTPNH 374
Query: 339 RKRKR--------DKESGVSRGIDFQFVSNVINFD-FPLDIQC----YIHRAGRTARGKN 385
+ +++ S + RGIDF V NVI FD P Y HR GR ARG
Sbjct: 375 KGKRKAISSCEGSPGASALHRGIDFSDVRNVILFDGVPSASNAAFSRYTHRVGRAARGNK 434
Query: 386 QGTALSFVSLRE 397
G A++F++L +
Sbjct: 435 DGMAITFLTLHQ 446
>gi|116195380|ref|XP_001223502.1| hypothetical protein CHGG_04288 [Chaetomium globosum CBS 148.51]
gi|118595827|sp|Q2H1Q8.1|RRP3_CHAGB RecName: Full=ATP-dependent rRNA helicase RRP3
gi|88180201|gb|EAQ87669.1| hypothetical protein CHGG_04288 [Chaetomium globosum CBS 148.51]
Length = 493
Score = 197 bits (502), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 134/394 (34%), Positives = 206/394 (52%), Gaps = 40/394 (10%)
Query: 32 AIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQE 91
A +LGW +PT IQ+ +IPL LQ++D++ A TGSGKTGAFA+P++Q +++ + Q
Sbjct: 79 ACKELGWKKPTPIQQESIPLALQDRDIIGLAETGSGKTGAFALPILQALLD-----KPQP 133
Query: 92 TKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATP 151
ALVL+P++EL Q+ ++ + L S ++C I +D+ Q L ++P +VVATP
Sbjct: 134 LFALVLAPTRELAAQIAQSFEALGSLIS--LRCALILGGLDMVQQAIALGKKPHVVVATP 191
Query: 152 ARALAHL-KAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLS 210
R L HL K K L++ L +++DEAD + + + +LKFLP+ + L SAT+S
Sbjct: 192 GRLLDHLEKTKGFSLRN-LRYLVMDEADRLLDMDFGPILDKILKFLPRERRTFLFSATMS 250
Query: 211 EDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTI 270
V SL+ LR+P+ + + VS L ++ K T L L N G+TI
Sbjct: 251 SKVESLQRACLRDPLKVSISSSKYQTVSTLVQNYVFIPHTHKDTYLIYLC--NEFAGQTI 308
Query: 271 I-FVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I F TV + ++ + L + L+ L AR A+ +F G D+++A+D A
Sbjct: 309 IIFTRTVIETQRIAILLRTLGMGAIPLHGGLSQSARLGALNKFRAGSRDILVATDVAA-- 366
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
RG+D V V+N D P D + Y+HR GRTAR G A
Sbjct: 367 ---------------------RGLDIPNVDCVLNLDLPGDSKTYVHRVGRTARAGRSGHA 405
Query: 390 LSFVSLREQDL-----MNDGTALSFVSLREQDLM 418
+SFV+ + +L GT L+ SL + D+M
Sbjct: 406 ISFVTQYDLELWLRIEAALGTKLTEYSLEKDDVM 439
>gi|171057308|ref|YP_001789657.1| DEAD/DEAH box helicase [Leptothrix cholodnii SP-6]
gi|170774753|gb|ACB32892.1| DEAD/DEAH box helicase domain protein [Leptothrix cholodnii SP-6]
Length = 479
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 116/377 (30%), Positives = 202/377 (53%), Gaps = 31/377 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII---NLKQT 86
L+AI G+L T IQ +AIP++L +DV+ A+TG+GKT AF++P++QK++ N +
Sbjct: 27 LRAIVDAGYLTMTPIQAKAIPIVLDGRDVMGAAQTGTGKTAAFSLPLLQKMLRHENASAS 86
Query: 87 AQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDI 146
+ALVL+P++EL +Q+ N++ V CV +D++ Q L ++
Sbjct: 87 PARHPVRALVLAPTRELADQVANNVKTYARHSQLRVTCV--FGGIDMAPQTAELKRGVEV 144
Query: 147 VVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
++ATP R L H++AK L + +E V++DEAD + G+ D++ +L +LPK Q +L S
Sbjct: 145 LIATPGRLLDHIQAKNCQL-NQVEYVVLDEADRMLDIGFLPDLQRILSYLPKTRQTLLFS 203
Query: 207 ATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQ 266
AT S ++ L L++P+++++ P + ++ + +D++ T+L+ L + ++ Q
Sbjct: 204 ATFSPEIKKLAQSYLQDPLLVEVARPNATATNVEQRFYSVTDDDKRRTVLHILRERSITQ 263
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
I+FVN+ +L E+ + T L+ + R A+ F +G DV++A+D
Sbjct: 264 A--IVFVNSKLGAARLARSFERDGLRTSALHGDKSQDERLKALDAFKRGEVDVLVATDVA 321
Query: 327 ALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQ 386
A RG+D + V NFD P + + Y+HR GRT R
Sbjct: 322 A-----------------------RGLDIADLPAVFNFDIPFNAEDYVHRIGRTGRAGAS 358
Query: 387 GTALSFVSLREQDLMND 403
G A+S VS + L++D
Sbjct: 359 GLAVSLVSHDDNRLVSD 375
>gi|120602237|ref|YP_966637.1| DEAD/DEAH box helicase [Desulfovibrio vulgaris DP4]
gi|120562466|gb|ABM28210.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris DP4]
Length = 462
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 127/387 (32%), Positives = 198/387 (51%), Gaps = 34/387 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L A+ +G+ +PT +Q AIP L +DVL A TG+GKT AF +PM+Q++++ + A
Sbjct: 13 LAALDGMGYRQPTPVQRGAIPPALAGEDVLALAATGTGKTAAFVLPMLQRLMDGPRGA-- 70
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ALV++P++EL Q H +++ L SR ++ I V V Q L ++VV
Sbjct: 71 --VRALVVAPTRELAEQTHDHVRRLG-SMSR-LRSTTIYGGVGVVAQALRLRAGVEVVVG 126
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
P R L H++ LDL SSLE++++DE D +F G+ D++ +L +P Q +L SAT+
Sbjct: 127 CPGRLLDHIRRGNLDL-SSLEVLVLDEGDSLFDLGFLADVRMLLGMVPTTCQRMLFSATM 185
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+ V L LR PV ++++ A+ P S + H + +L T L+ +G
Sbjct: 186 PDAVRVLAAEALRQPVTVQVD--AVQPASTVHHALYPVPAHLRTPLLKTFLRSG-PEGSV 242
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
++FV T +L L+ S L +L + R A+ F G YDV++A+D A
Sbjct: 243 VVFVRTRHGARRLWQQLDNVGFSVTCLQGKLSQRRRLAALEGFRDGRYDVLVATDVAA-- 300
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
RG+D V++V+N+D P YIHR GRT R GTA
Sbjct: 301 ---------------------RGLDISQVTHVVNYDVPSTADAYIHRVGRTGRAARNGTA 339
Query: 390 LSFVS-LREQDLMNDGTALSFVSLREQ 415
++FV+ E + N AL V RE+
Sbjct: 340 MTFVTPADEAQVRNIERALGTVIPRER 366
>gi|410659385|ref|YP_006911756.1| Cold-shock DEAD-box protein A [Dehalobacter sp. DCA]
gi|410662371|ref|YP_006914742.1| Cold-shock DEAD-box protein A [Dehalobacter sp. CF]
gi|409021740|gb|AFV03771.1| Cold-shock DEAD-box protein A [Dehalobacter sp. DCA]
gi|409024727|gb|AFV06757.1| Cold-shock DEAD-box protein A [Dehalobacter sp. CF]
Length = 471
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 120/377 (31%), Positives = 205/377 (54%), Gaps = 33/377 (8%)
Query: 21 FTFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKI 80
F L + QAI+++G+ E T IQER IPL+L+ KD++ +A+TG+GKT AF IPMI+++
Sbjct: 5 FEIGLSSVLTQAISEMGFEETTPIQERTIPLVLEGKDIIGQAQTGTGKTAAFGIPMIERM 64
Query: 81 INLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLL 140
+++ KALV++P++EL Q+ + + + + V+ + I D+ Q L
Sbjct: 65 KPDRES-----IKALVVTPTRELAIQVAEELNRIGQ--FKGVRSLPIYGGQDIDRQIRSL 117
Query: 141 VERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLY 200
RP I+V TP R + H++ +T+ L+ +E V++DEAD + S G+ +D++ +LK +P+
Sbjct: 118 RNRPQIIVGTPGRLMDHMRRRTIRLQ-QVETVVLDEADEMLSMGFVEDIENILKEVPEQR 176
Query: 201 QAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLL 260
Q +L SAT+ + +L L ++NP + ++ I V Q+ ++ QE +K +L LL
Sbjct: 177 QTLLFSATMPKSILDLAQRFMQNPEYISMKTKEII-VPQIEQCYVEVQEKQKFDVLCRLL 235
Query: 261 KLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVI 320
+ I+F T + +L L + S ++ +L R + F +GL +++
Sbjct: 236 DIQ-SPDLAIVFGRTKRRVDELFEALSKRGYSAEGIHGDLTQARRDMVMRHFKEGLTEIL 294
Query: 321 IASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRT 380
+A+D A RG+D V++V NFD P D + Y+HR GRT
Sbjct: 295 VATDVAA-----------------------RGLDISGVTHVYNFDVPQDPESYVHRIGRT 331
Query: 381 ARGKNQGTALSFVSLRE 397
R G A++FV+ RE
Sbjct: 332 GRAGKGGQAITFVTPRE 348
>gi|356576789|ref|XP_003556512.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase
16-like [Glycine max]
Length = 365
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 131/361 (36%), Positives = 186/361 (51%), Gaps = 59/361 (16%)
Query: 176 EADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPA-- 233
+ADL+ S+GYE+ +KA +P+ Q +L SAT S DV LK LIL +P IL L E
Sbjct: 3 QADLLLSYGYENHIKAFTPHVPRSCQCLLMSATSSADVDKLKKLILHSPFILTLPEVGNH 62
Query: 234 ---IAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFK 290
+ P + + + I +K + +LKL LVQ K +IF NT+D ++LKL+ E+F
Sbjct: 63 KDEVIPXN-VQQFWISCPASDKLLNILAVLKLGLVQKKVLIFTNTIDMSFRLKLFXEKFG 121
Query: 291 ISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD----EKALETPQ---INSTNNR---K 340
I + VLN ELP +R H + +FN GL+D +IA+D ++ E P+ + S +R K
Sbjct: 122 IRSAVLNPELPQNSRLHILEEFNAGLFDYLIATDLSQSKEKDEVPKESNVGSWKSRQHAK 181
Query: 341 RKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDL 400
K D E GV RGIDF+ V VINF+ P + Y+HR GRT R N G ++S VS E D
Sbjct: 182 IKLDSEFGVVRGIDFKNVYTVINFEMPESVAGYVHRIGRTGRAYNSGASVSLVSTDEMDT 241
Query: 401 MNDGTALSFVSLREQDLMNDVNEY-LMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS 459
+ + SFV E N + E+ L+T + V+ YRA+D +S
Sbjct: 242 LEE--IRSFVRDDENKGTNSIAEFPLLTK---------------NAVESLRYRAEDVAKS 284
Query: 460 -------------------------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYI 494
+FE NP DL+ L+HDK L HL DVP+Y+
Sbjct: 285 VTRIAVRESRAQDLRNEILNSEKLKAHFETNPKDLDLLKHDKVLSKNPPPPHLRDVPEYL 344
Query: 495 V 495
+
Sbjct: 345 L 345
>gi|412994181|emb|CCO14692.1| predicted protein [Bathycoccus prasinos]
Length = 668
Score = 195 bits (496), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 170/579 (29%), Positives = 267/579 (46%), Gaps = 106/579 (18%)
Query: 39 LEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII---NLKQTAQVQET--K 93
L PT Q R+IPL L+ DV RA TGSGKT A+ +P + K+ K+T++ + T +
Sbjct: 37 LRPTHAQIRSIPLTLKGLDVSCRAHTGSGKTLAYLLPSLHKVFLQEKKKKTSREKTTNPR 96
Query: 94 ALVLSPSKELCNQLHKNIQELTMKCSRD-VKCVDISEQVDVSVQEPLLVER----PDIVV 148
+VL P++EL Q+ K QE+ C D K + E S + E PD++V
Sbjct: 97 VIVLVPTRELATQVRKECQEILKHCGDDDEKKYRVGELPQGSSASAAVREAARNCPDVLV 156
Query: 149 ATPARALAHLKAKTLDLKS----SLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAIL 204
+TPAR LK K KS LE++++DE DL+ SFG+E D+K + + + Q ++
Sbjct: 157 STPARVAQCLKDKLFPPKSVNGDGLEMMVLDECDLLLSFGHEKDIKYIFERCREGVQTVM 216
Query: 205 ASATL-SEDVLSLKHLILRNPVILKLEEPAIAPVSQ-----------------LAHY--H 244
SAT SE+V +LK L+L P + ++ + + H+
Sbjct: 217 VSATTTSEEVGNLKSLLLSKPAEVDCDDVEEMEQKEREEREMRKELKKKKKPLITHFGLE 276
Query: 245 ILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKA 304
I +++K L LL+L L + K +IFV D+ + +L+L +F + L+SELPA +
Sbjct: 277 IKKGKNDKLLYLMALLRLGLCKKKILIFVKDADEAVRARLFLHKFGVLCVALHSELPANS 336
Query: 305 RCHAVYQFNQGLYDVIIASDE----------------------------------KALET 330
R H + +FN+G++DV++A+ E E
Sbjct: 337 RAHILEEFNRGVHDVLVAAAEDDSSSNSSNDGSNANEKENAKEEEEEEEEQPTRKSKKER 396
Query: 331 PQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTAL 390
+ N+ K+D E GVSRG+DF+ V VINF+ P + Y HR GRT R G A+
Sbjct: 397 KKEKEKRNQAAKKDSEFGVSRGVDFKKVHTVINFEVPKTFEAYQHRVGRTGRAGATGVAI 456
Query: 391 SFVSLREQD-----LMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQ-FNLD 444
+F +++ L A + E +D E + D +KP++ +
Sbjct: 457 TFFGPSDEEAYHVLLKGYADAAAVAKAAEAKEEDDDEEEDEREEEDVDDFLKPFERLPKE 516
Query: 445 EVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKALY 479
+ YRA+D RS ++FE+NP DL LRHD ++
Sbjct: 517 ATEALRYRAEDTLRSISKSAVKDARLRELRVELLNSERLASHFEENPDDLNLLRHDSSIS 576
Query: 480 TV-RIQSHLADVPDYIVPPALKKLAR-----IE-DDGDE 511
HL+ +P Y+ + KK + +E +DGDE
Sbjct: 577 KRDDANKHLSHLPAYLRNASKKKRKKNAINAVETEDGDE 615
>gi|46580391|ref|YP_011199.1| ATP-dependent RNA helicase RhlE [Desulfovibrio vulgaris str.
Hildenborough]
gi|387153190|ref|YP_005702126.1| DEAD/DEAH box helicase [Desulfovibrio vulgaris RCH1]
gi|46449808|gb|AAS96458.1| ATP-dependent RNA helicase RhlE [Desulfovibrio vulgaris str.
Hildenborough]
gi|311233634|gb|ADP86488.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris RCH1]
Length = 462
Score = 195 bits (495), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 120/365 (32%), Positives = 189/365 (51%), Gaps = 33/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L A+ +G+ +PT +Q AIP L +DVL A TG+GKT AF +PM+Q++++ + A
Sbjct: 13 LAALDGMGYRQPTPVQRGAIPPALAGEDVLALAATGTGKTAAFVLPMLQRLMDGPRGA-- 70
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ALV++P++EL Q H +++ L SR ++ I V V Q L ++VV
Sbjct: 71 --VRALVVAPTRELAEQTHDHVRRLG-SMSR-LRSTTIYGGVGVVAQALRLRAGVEVVVG 126
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
P R L H++ LDL SSLE++++DE D +F G+ D++ +L +P Q +L SAT+
Sbjct: 127 CPGRLLDHIRRGNLDL-SSLEVLVLDEGDSLFDLGFLADVRMLLGMVPATCQRMLFSATM 185
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+ V L LR PV ++++ A+ P S + H + +L T L+ +G
Sbjct: 186 PDAVRVLAAEALRQPVTVQVD--AVQPASTVHHALYPVPAHLRTPLLKTFLRSG-PEGSV 242
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
++FV T +L L+ S L +L + R A+ F G YDV++A+D A
Sbjct: 243 VVFVRTRHGARRLWQQLDNVGFSVTCLQGKLSQRRRLAALEGFRDGRYDVLVATDVAA-- 300
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
RG+D V++V+N+D P YIHR GRT R GTA
Sbjct: 301 ---------------------RGLDISQVTHVVNYDVPSTADAYIHRVGRTGRAARNGTA 339
Query: 390 LSFVS 394
++FV+
Sbjct: 340 MTFVT 344
>gi|392959166|ref|ZP_10324651.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans DSM
17108]
gi|421052970|ref|ZP_15515953.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans B4]
gi|421058006|ref|ZP_15520747.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans B3]
gi|421066428|ref|ZP_15528037.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans A12]
gi|421070041|ref|ZP_15531179.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans A11]
gi|392442444|gb|EIW20027.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans B4]
gi|392448946|gb|EIW26118.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans A11]
gi|392455967|gb|EIW32732.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans A12]
gi|392456816|gb|EIW33553.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans DSM
17108]
gi|392461699|gb|EIW37866.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans B3]
Length = 484
Score = 194 bits (494), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 121/369 (32%), Positives = 207/369 (56%), Gaps = 37/369 (10%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ 90
QA+ +LG+ T +QE IPL L KD++VR++TGSGKT AFAIP+ +KI ++ QV
Sbjct: 17 QALEELGYEILTKVQEEVIPLALAQKDIIVRSQTGSGKTAAFAIPICEKIRVEQKNPQV- 75
Query: 91 ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVAT 150
LVL+P++EL Q+ ++I + + ++C + + + +Q+ L +R ++V T
Sbjct: 76 ----LVLTPTRELAVQVKQDIANIGR--FKRIRCAAVVGRQSMEIQKRELKQRVHVIVGT 129
Query: 151 PARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLS 210
P R L HL+ K+++++ ++ +IIDEAD + G+ + M+AV+K LP +L SAT+
Sbjct: 130 PGRTLDHLERKSMNVE-EVQYLIIDEADKMLDMGFIEQMEAVIKMLPDDRVTMLFSATMP 188
Query: 211 EDVLSLKHLILRNPVILKL--EEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGK 268
E + + ++NP+ +++ E P++ + Q +Y + +E+EK T++ +L++ G
Sbjct: 189 EKIQEICSQYMKNPIKVEIDSENPSLQNIEQ-CYYDV--EENEKLTLITQVLQIER-PGT 244
Query: 269 TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL 328
I+F NT DK L +++ S L+ + + R ++ F +G + +IA+D A
Sbjct: 245 CILFCNTRDKVEMLLTKMKEKGCSCGSLHGGMEQRDRLESIQSFKRGEFQFLIATDVAA- 303
Query: 329 ETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGT 388
RGI +S V+N+D PLD + YIHR GRT R N GT
Sbjct: 304 ----------------------RGIHIDDISLVVNYDMPLDNESYIHRIGRTGRAGNVGT 341
Query: 389 ALSFVSLRE 397
A++FV+ E
Sbjct: 342 AITFVTRME 350
>gi|164660112|ref|XP_001731179.1| hypothetical protein MGL_1362 [Malassezia globosa CBS 7966]
gi|159105079|gb|EDP43965.1| hypothetical protein MGL_1362 [Malassezia globosa CBS 7966]
Length = 638
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 125/394 (31%), Positives = 200/394 (50%), Gaps = 46/394 (11%)
Query: 19 LPFTFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIP 75
+P FT + L+ +A L + PT IQ R IP+ L KD++ A TGSGKT AF IP
Sbjct: 75 IPTDFTALQLNRALLRGLAALNFSRPTPIQARTIPIALAGKDIVAGAVTGSGKTAAFLIP 134
Query: 76 MIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCS-RDVKCVDISEQVDVS 134
+++++ +++A +++ +VL P++EL Q H Q L + R CV + +
Sbjct: 135 IMERLSYRQRSADDAKSRVVVLCPTRELAIQCHSVAQALGKFMNVRFCLCVG---GLSLK 191
Query: 135 VQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLK 194
+QE L RPD+++ATP R + H++ +EI+++DEAD + G+ED++ +++
Sbjct: 192 LQEAELKTRPDVIIATPGRLIDHVRNSASFGMEDVEILVMDEADRMLEDGFEDELNEIVR 251
Query: 195 FLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQL-------------- 240
PK Q +L SAT++EDV L L LR PV L +P + S+L
Sbjct: 252 LCPKQRQTMLFSATMTEDVDQLVRLSLRTPVRL-FVDPKRSTASKLTQEFVRVRAQSRLT 310
Query: 241 AHYHILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSEL 300
H A++ +A IL TL + + + IIFV + ++LK+ +S L+ +L
Sbjct: 311 GHARQQAEDQHRAAILVTLC-MRTFRDQVIIFVRSKKLAHQLKILFGLLGLSAAELHGDL 369
Query: 301 PAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSN 360
+ R ++ F G D ++A+D SRGID + V
Sbjct: 370 SQEQRLQSLSLFRDGKVDFLLATDL-----------------------ASRGIDIRGVQT 406
Query: 361 VINFDFPLDIQCYIHRAGRTARGKNQGTALSFVS 394
VIN+D P ++ Y+HR GRTAR QG A++ V
Sbjct: 407 VINYDMPAQLEPYLHRVGRTARAGRQGRAVTLVG 440
>gi|195346170|ref|XP_002039640.1| GM22625 [Drosophila sechellia]
gi|194134866|gb|EDW56382.1| GM22625 [Drosophila sechellia]
Length = 193
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 100/176 (56%), Positives = 123/176 (69%), Gaps = 7/176 (3%)
Query: 216 LKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTIIFVNT 275
+K L L+NPV LKLEEP + P QL H ILA+E++K ILY LLKL L++GK+IIFVN+
Sbjct: 1 MKGLCLKNPVTLKLEEPELVPQDQLTHQRILAEENDKPAILYALLKLRLIRGKSIIFVNS 60
Query: 276 VDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINS 335
+D+CYK++L+LEQF I CVLNSELPA R H + QFN+G YD+IIASDE +E P
Sbjct: 61 IDRCYKVRLFLEQFGIRACVLNSELPANIRIHTISQFNKGTYDIIIASDEHHIEKP---G 117
Query: 336 TNNRK--RKRDKESGVSRGIDFQFVSNVINFDFP-LDIQCYIHRAGRTARGKNQGT 388
NRK R D ES SRGIDFQ V+NVINFD P + I AGR G N+G+
Sbjct: 118 GTNRKSPRSGDMESSASRGIDFQCVNNVINFDSPGMSRLISIGLAGRPG-GNNKGS 172
>gi|399216115|emb|CCF72803.1| unnamed protein product [Babesia microti strain RI]
Length = 579
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 144/522 (27%), Positives = 251/522 (48%), Gaps = 105/522 (20%)
Query: 33 IAKLG--WLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ 90
+ K G WL P +I+ AIP+IL +DVL+R+RTGSGKT A IPM++ + + + A Q
Sbjct: 6 VLKFGEKWLSPPIIEALAIPVILSGRDVLIRSRTGSGKTLAAIIPMVELLTSDGENADRQ 65
Query: 91 ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCV------DISEQVDVSVQEPLLVER- 143
+AL+L+P+ ELC Q++ + ++ + V I E V + + LVE+
Sbjct: 66 YPRALILAPTSELCLQIYDVVSQVIEYLQDHLTVVVKISHHSIVENVALGKRYKNLVEKY 125
Query: 144 ------------PDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKA 191
DI++ TP + +K +L L+ ++IDE D++F G+E++++
Sbjct: 126 DIQAETEEIDNFGDILICTPTSFIRDVKVA--NLHKYLKFLLIDEGDMLFLMGFEEEIEK 183
Query: 192 VLKFL-----PKLYQAILASATLSEDVLSLKHLILRNPVILKL-EEPAIAPVSQLAHYHI 245
++K L K +Q ++ SATL ++V L +IL P ++ + +E + +S+L I
Sbjct: 184 IVKLLRPNAQTKSFQTVVLSATLDDNVDKLNGMILYKPKLIDMKDEIKMGVLSELI---I 240
Query: 246 LAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKAR 305
E++K I+Y L+ +++ K +IFVNT+++ Y LKL L +I ++ L + R
Sbjct: 241 KVNENDKFLIIYIFLRFSVLPMKCLIFVNTIERAYSLKLLLSGLQIDCVAISPILALETR 300
Query: 306 CHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFD 365
+ FN+G + ++IA +K + + RGIDF+ ++ +N D
Sbjct: 301 SSIINSFNKGTFKILIACPDKL----------------GGKFSLDRGIDFKGITCAVNLD 344
Query: 366 FPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYL 425
P + Y+HR GRTAR + G AL+F+S N+V+ +L
Sbjct: 345 APHSDKDYVHRIGRTARAGSNGIALTFIS------------------------NEVDHFL 380
Query: 426 MTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS-------------------------N 460
++ +D IK + L ++ YR D R+ +
Sbjct: 381 LS--RQD---IKYIELPLGVLEQMRYRFDDVMRNVTPNAISSAQLQAISKSALTSSKLKD 435
Query: 461 YFEDNPTDLETLR---HDKALYTVRIQSHLADVPDYIVPPAL 499
YFE N D + L+ + V+ + HL+ +P Y++ AL
Sbjct: 436 YFETNRGDFDALQIYASQTDIKGVKDKKHLSLIPSYLLSEAL 477
>gi|383784621|ref|YP_005469191.1| DEAD/DEAH box helicase [Leptospirillum ferrooxidans C2-3]
gi|383083534|dbj|BAM07061.1| putative DEAD/DEAH box helicase domain protein [Leptospirillum
ferrooxidans C2-3]
Length = 437
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 124/378 (32%), Positives = 206/378 (54%), Gaps = 37/378 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII---NLKQT 86
++A+ + G+L PT IQ AIP +L +D++ A+TG+GKT F +P+I+ + + K+
Sbjct: 13 VRAVTERGYLTPTPIQVAAIPAVLSGRDLMAGAQTGTGKTAGFTLPIIEILSRKNDKKEK 72
Query: 87 AQVQETKALVLSPSKELCNQLHKNIQELT--MKCSRDVKCVDISEQVDVSVQEPLLVERP 144
+ KAL+L+P++EL Q+ +++ E MK S V I V ++ Q L
Sbjct: 73 GRRVPVKALILTPTRELAAQVEESVVEYGKHMKLSSTV----IFGGVSINPQIQKLRTGV 128
Query: 145 DIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAIL 204
DI+VATP R L H++ +TLDL S +EI+++DEAD + G+ D++ ++ LPK Q +L
Sbjct: 129 DILVATPGRLLDHVQQRTLDL-SHVEILVLDEADRMLDMGFIRDIRKIISLLPKTRQNLL 187
Query: 205 ASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKL-N 263
SAT S+++ SL IL++P+++++ P+ PV +++ L D+K +L L+K +
Sbjct: 188 FSATFSDEIKSLSSSILKDPILIEI-TPSGKPVEKVSQKIYLVDRDKKRAVLSKLIKQHD 246
Query: 264 LVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIAS 323
Q ++F T +L L + IS+ ++ AR HA+ +F G V++A+
Sbjct: 247 WFQ--ILVFTRTKHGANRLAEQLNKDGISSLAIHGNKSQGARTHALAEFKTGTLHVLVAT 304
Query: 324 DEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARG 383
D A RGID + +V+NFD P + Y+HR GRTAR
Sbjct: 305 DIAA-----------------------RGIDISELPHVVNFDLPNVPEDYVHRIGRTARA 341
Query: 384 KNQGTALSFVSLREQDLM 401
+G A+S V + E L+
Sbjct: 342 GAEGEAISLVCIDEHKLL 359
>gi|168010159|ref|XP_001757772.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691048|gb|EDQ77412.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 753
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 127/374 (33%), Positives = 192/374 (51%), Gaps = 30/374 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++A LG+ EPT IQ IPL L +D+ A TGSGKTGAFA+PM++++ L + ++
Sbjct: 140 IRACETLGYREPTPIQAACIPLALTGRDICGSAVTGSGKTGAFALPMLERL--LYRPRRI 197
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ L+L+P++EL Q+H +Q+L DV + + VQE L RPDIVVA
Sbjct: 198 PAIRCLILTPTRELAVQVHSMVQKLAQFT--DVTSAIVVGGLSSKVQEVALRARPDIVVA 255
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HL+ L I+++DEAD + G+ ++ +++ PK Q +L SAT+
Sbjct: 256 TPGRMLDHLQNSLSVGLEDLSILVLDEADRLLELGFTQEVHELVRQCPKRRQTMLFSATM 315
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHIL--AQEDEKATILYTLLKLNLVQG 267
+E+V +L +L L +PV L + PVS + A E++K +L L +
Sbjct: 316 TEEVSNLINLSLNSPVRLSADPSTKRPVSLSEEVVKIRPALENDKEAVLLALCTRTFKE- 374
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
K IIF + ++LK+ + L+ L R A+ F + D +IA+D A
Sbjct: 375 KVIIFSGMKVEAHRLKILFGLAGLKAAELHGNLTQAMRLDALESFRKQEVDFLIATDVAA 434
Query: 328 LETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQG 387
RG+D V VINF P DI Y+HR GRTAR +G
Sbjct: 435 -----------------------RGLDIVGVETVINFHCPSDITVYVHRVGRTARAGRKG 471
Query: 388 TALSFVSLREQDLM 401
A++FV+ RE+ L+
Sbjct: 472 CAVTFVTERERSLL 485
>gi|391345925|ref|XP_003747233.1| PREDICTED: ATP-dependent RNA helicase DDX54-like [Metaseiulus
occidentalis]
Length = 805
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 126/374 (33%), Positives = 193/374 (51%), Gaps = 29/374 (7%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ I K G+ +PT IQ +AIP IL+ +DV+ ARTGSGKT AF +PM + LK + V
Sbjct: 69 LKGIQKKGYRQPTPIQRKAIPPILERRDVVAMARTGSGKTAAFLLPMFEI---LKTHSPV 125
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+AL++SP++EL Q HK +EL D++ V I + Q + E PDI++
Sbjct: 126 TGGRALIISPTRELAIQTHKFCKELGKFT--DLRSVVILGGDSLDDQFAAMHENPDIIIG 183
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L + L+L+ +EIV+ DEAD +F G ++ M +L L Q +L SATL
Sbjct: 184 TPGRLLHLVMEMNLNLRM-IEIVVFDEADRLFEMGLQEQMTEILNRLRDTRQTVLFSATL 242
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
++ L++P++++L+ + P + Y ++ +ED+ A +L+ L +L + T
Sbjct: 243 PRLLIDFVQAGLKDPLLIRLDVDSRLPDTLRTVYWVMREEDKYAVLLHLLKELEVGDNLT 302
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
++FV T ++ LE+ IS + S L AR AV F +++ +D A
Sbjct: 303 VVFVPTKHHVEYIREILEKIGISCGCVYSSLDQVARTVAVNAFKSKSLKILLVTDVAA-- 360
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
RGID + NV+NF FP + ++HR GR AR GTA
Sbjct: 361 ---------------------RGIDIPLLDNVVNFSFPAKPKLFVHRVGRVARAGRFGTA 399
Query: 390 LSFVSLREQDLMND 403
SFVS E + D
Sbjct: 400 YSFVSADEASYLLD 413
>gi|148242659|ref|YP_001227816.1| superfamily II DNA/RNA helicase [Synechococcus sp. RCC307]
gi|147850969|emb|CAK28463.1| Superfamily II DNA/RNA helicase [Synechococcus sp. RCC307]
Length = 560
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 132/425 (31%), Positives = 220/425 (51%), Gaps = 43/425 (10%)
Query: 23 FTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQK 79
F F +P L+A+ K G+ +P+ IQ AIP ++ +D+L +A+TG+GKT AFA+P++ +
Sbjct: 17 FAGFGLPDSLLEALTKCGYEQPSPIQAAAIPELMLGRDLLGQAQTGTGKTAAFALPLLAR 76
Query: 80 IINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL 139
I NL + + + LVL+P++EL Q+ + Q C+ + + + D Q
Sbjct: 77 I-NL----EARHPQVLVLAPTRELAIQVSEAFQRYA-SCTPGLHVLPLYGGSDFRDQIHK 130
Query: 140 LVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199
L +VV TP R + H++ TL++ S LE +++DEAD + G+ DD+K VL+ LP
Sbjct: 131 LRRGVHVVVGTPGRVMDHMRQGTLNV-SQLETLVLDEADEMLRMGFIDDVKWVLEQLPSE 189
Query: 200 YQAILASATLSEDVLSLKHLILRNP--VILKLEEPAIAPVSQLAHYHILAQEDEKATILY 257
Q +L SAT+ ++ + L+NP VI++ ++ A S++ HIL +K + L
Sbjct: 190 RQVVLFSATMPPEIKRISQQHLQNPAEVIIRTQK---ADASRIRQRHILLPHQQKLSALL 246
Query: 258 TLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLY 317
+L+ + G IIF T + LE I+ VLN ++P R + + QG
Sbjct: 247 RVLEAH-GPGGVIIFARTKAVTVTVAEALEAEGIACSVLNGDVPQSLRERTIERLKQGRI 305
Query: 318 DVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRA 377
DV++A+D A RG+D + V+N+D P D + Y+HR
Sbjct: 306 DVLVATDVAA-----------------------RGLDVDRIGLVVNYDAPFDSEAYVHRI 342
Query: 378 GRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMND--VNEYLMTNLHE--DD 433
GRT R QG A+ F+S RE+ L++ S+ D+ +D +N+ + NL + D
Sbjct: 343 GRTGRAGRQGDAILFLSYRERRLLHSLERAVGSSIDAMDVPSDAEINQQRLDNLQQQLSD 402
Query: 434 FIIKP 438
+ +P
Sbjct: 403 LVSEP 407
>gi|308272082|emb|CBX28690.1| ATP-dependent RNA helicase rhlE [uncultured Desulfobacterium sp.]
Length = 398
Score = 191 bits (485), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 119/371 (32%), Positives = 197/371 (53%), Gaps = 33/371 (8%)
Query: 32 AIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQE 91
IA G++ PT IQ +AIPL++ +D++ A+TG+GKT AF +P++ ++I K+
Sbjct: 15 GIADAGFVTPTPIQTKAIPLVMDGQDIMGLAQTGTGKTAAFVLPILHRLIQGKRG----H 70
Query: 92 TKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATP 151
++L+++P++EL Q+H +I L K +R ++ V + V+++ Q L +IVVA P
Sbjct: 71 VRSLIIAPTRELAEQIHDDINTLG-KDTR-IRSVTVYGGVNINTQIQKLKRGAEIVVACP 128
Query: 152 ARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSE 211
R L H+ KT+DL + +E+++IDEAD +F G+ D++ +LK LP Q +L SAT+ +
Sbjct: 129 GRLLDHMTRKTIDL-TRVEVLVIDEADHMFDMGFLPDIRRILKHLPAQRQTLLFSATMPD 187
Query: 212 DVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTII 271
++ SL IL++P+ +K+ E A AHY + AQ + A +L L +N ++
Sbjct: 188 EIKSLAKDILKDPITIKVSETVPADTVSHAHYPV-AQHLKTAFLLKLLEHIN--SKSVLV 244
Query: 272 FVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETP 331
F T + L L + + L L R A+ F G V++A+D A
Sbjct: 245 FTRTKHRAKHLDEQLAKAGFRSASLQGNLSQVRRQAALDGFRNGRIQVLVATDIAA---- 300
Query: 332 QINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALS 391
RGID +S+VIN+D P YIHR GRT R G A +
Sbjct: 301 -------------------RGIDVCKISHVINYDIPDTPDAYIHRIGRTGRADQSGDAFT 341
Query: 392 FVSLREQDLMN 402
++ ++ ++N
Sbjct: 342 LITSEDKKMVN 352
>gi|340058667|emb|CCC53027.1| putative ATP-dependent RNA helicase [Trypanosoma vivax Y486]
Length = 596
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 140/423 (33%), Positives = 210/423 (49%), Gaps = 62/423 (14%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIIN----LKQ 85
L+AI +L W PT +Q IPL L+ +D+ +++RTGSGKTGAF +P++Q++I L
Sbjct: 23 LEAIKRLKWKAPTPVQGACIPLALKGRDLAIQSRTGSGKTGAFLVPILQRVITEQERLCN 82
Query: 86 TAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPD 145
VQ LVL PS+ELC Q + L+ V +++ + S+ + L P
Sbjct: 83 RRAVQNPVGLVLLPSEELCEQTVEVANALSRYIKPRVTVNNLTSRD--SITKARLASAP- 139
Query: 146 IVVATPARALAHLKAKTL---DLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQA 202
I+VAT A + T+ D++ L V+IDEADL+ S E ++ V +P Q
Sbjct: 140 ILVATAAALGKMCRNGTVTAEDMRP-LRCVVIDEADLMMSIA-ESSLRTVQSLIPPSTQT 197
Query: 203 ILASATLSEDVLSLKHLILRNPVILKL--EEPAIAP-----------------------V 237
ILASATL+++V +K +L NPV + L EE +P
Sbjct: 198 ILASATLTDEVAHIKGQLLHNPVTITLDNEEDGSSPPGGDNTENIVLETRVTVRGGDSKG 257
Query: 238 SQLAHYHILAQED-EKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVL 296
+L+H++++A ++ + T+LY L +L + GKT+IFVN+ D YKL+ +L Q I + V
Sbjct: 258 GKLSHHYLVATDECHRHTLLYALFRLGHIDGKTLIFVNSEDSTYKLQSFLAQLGIESLVY 317
Query: 297 NSELPAKARCHAVYQFNQGLYDVIIASD------------------EKALETPQINSTNN 338
+S LP R +A++ F G +I +D +A E Q +
Sbjct: 318 DSSLPMNVRLNALHSFQTGTVGALICTDGTLENMDRLRDGAEVVSESQAGEVGQGMARGK 377
Query: 339 RKRKRDKESG-VSRGIDFQFVSNVINFD-FPLDIQC----YIHRAGRTARGKNQGTALSF 392
K +G + RGIDF V+NVI FD F Y HRAGR RG G ++
Sbjct: 378 SVTYNLKNAGTLHRGIDFSDVNNVILFDGFSAPTTSAFSRYTHRAGRAGRGGKDGIVITI 437
Query: 393 VSL 395
SL
Sbjct: 438 FSL 440
>gi|313892323|ref|ZP_07825915.1| DEAD-box ATP-dependent RNA helicase CshA [Dialister microaerophilus
UPII 345-E]
gi|313119182|gb|EFR42382.1| DEAD-box ATP-dependent RNA helicase CshA [Dialister microaerophilus
UPII 345-E]
Length = 491
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 119/368 (32%), Positives = 196/368 (53%), Gaps = 33/368 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++A+A +G+ EP+ IQ+ AIP+ +Q KD++ +A+TG+GKT AF IP++Q+I K Q
Sbjct: 15 MKAVADMGFEEPSPIQKEAIPIAMQGKDLIGQAQTGTGKTAAFGIPILQRIDTSKPGPQ- 73
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
A+VLSP++EL Q + I L ++K + I D+ Q L ++P+I+VA
Sbjct: 74 ----AIVLSPTRELAIQSAEEINHLAQYM--NIKTIPIYGGQDIERQFRALKKKPNIIVA 127
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + H+K KT+DL S+++I ++DE D + G+ DD++ ++ PK Q + SAT+
Sbjct: 128 TPGRLMDHMKRKTIDL-SNVQIAVLDEGDEMVDMGFIDDIRTIMAATPKERQTLFFSATM 186
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+ L + L P I+K++ A + + +I + +K L LL + +
Sbjct: 187 PAPIRELANSFLNEPEIVKIKA-ATVTIDLIEQEYIELPDRQKFDALCRLLDMQSPE-LA 244
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+FV T + ++ L++ S L+ +L + R + QF +G D ++A+D A
Sbjct: 245 IVFVRTKRRADEVTEALKKRAYSAEGLHGDLSQQKRDSVIRQFKEGTIDFLVATDVAA-- 302
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
RG+D V++V NFD P D + Y+HR GRT R G A
Sbjct: 303 ---------------------RGLDISGVTHVYNFDMPQDPEIYVHRVGRTGRAGKTGLA 341
Query: 390 LSFVSLRE 397
+FV RE
Sbjct: 342 TTFVISRE 349
>gi|322379432|ref|ZP_08053802.1| ATP-dependent RNA helicase, DEAD-box family [Helicobacter suis HS1]
gi|322380957|ref|ZP_08055023.1| ATP-dependent DEAD box-containing RNA helicase [Helicobacter suis
HS5]
gi|321146629|gb|EFX41463.1| ATP-dependent DEAD box-containing RNA helicase [Helicobacter suis
HS5]
gi|321148141|gb|EFX42671.1| ATP-dependent RNA helicase, DEAD-box family [Helicobacter suis HS1]
Length = 471
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 125/412 (30%), Positives = 212/412 (51%), Gaps = 55/412 (13%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L++IA G+ P+ IQE+AIP+IL+ KDV+ +A+TG+GKT AFA+P+IQ + N K
Sbjct: 32 LKSIADAGFTGPSPIQEKAIPVILEGKDVIAQAQTGTGKTAAFALPIIQNLQNDKS---- 87
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCV----DISEQVDVSVQEPLLVERPD 145
+AL+++P++EL Q+ I +L CV I +Q D LL P
Sbjct: 88 --IEALIITPTRELAMQISDEIFKLGKSSRTRTICVYGGQSIKKQCD------LLERNPQ 139
Query: 146 IVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILA 205
+++ATP R L HLK K L + + +V++DE+D + G+ DD++ + +LP+ Q +L
Sbjct: 140 VMIATPGRLLDHLKNKRLK-RFAPRVVVLDESDEMLDMGFLDDIEEIFNYLPEDAQILLF 198
Query: 206 SATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLV 265
SAT+ + L + IL++PV + + + ++++ + + I+ L K N
Sbjct: 199 SATMPAPIKDLANKILQDPVSIHIAPTHVTNADISQRFYVINEHERNEAIMRLLDKEN-- 256
Query: 266 QGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE 325
K+IIF+ + +L +L T L+ ++ +AR ++ F L DV++A+D
Sbjct: 257 HSKSIIFMRMKREVDELHQFLSAKGYKTTPLHGDMEQRARRESIKAFKSKLADVLVATDV 316
Query: 326 KALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKN 385
SRG+D VS+V N+ PL+ + YIHR GRT R
Sbjct: 317 -----------------------ASRGLDISDVSHVFNYHLPLNTESYIHRIGRTGRAGK 353
Query: 386 QGTALSFVSLREQDLMNDGTALSFVSLR--EQDLMNDVNEYLMTNLHEDDFI 435
+G A++ V T L + L+ ++D+ + + Y + N++ED I
Sbjct: 354 KGVAITLV-----------TPLEYKELQRMQKDIGSSIELYEIPNMNEDRLI 394
>gi|415886177|ref|ZP_11548000.1| DEAD/DEAH box helicase domain protein [Bacillus methanolicus MGA3]
gi|387588830|gb|EIJ81151.1| DEAD/DEAH box helicase domain protein [Bacillus methanolicus MGA3]
Length = 485
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 116/374 (31%), Positives = 206/374 (55%), Gaps = 43/374 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
+++I K+G+ E T IQ + IPL L+NKD++ +A+TG+GKT AF IP+I+K I++ Q
Sbjct: 14 MKSIKKMGFEEATPIQAQTIPLSLENKDLIGQAQTGTGKTAAFGIPLIEK-IDIDQDV-- 70
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ +V++P++EL Q+ + + + + + + I D+S Q L +RP I+V
Sbjct: 71 --IQGIVVAPTRELAIQVSEEL--FKIGYGKKARVLAIFGGQDISRQIKALKKRPHIIVG 126
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H+ KT+ L ++++ ++DEAD + + G+ DD++A+L +PK Q +L SAT+
Sbjct: 127 TPGRILDHINRKTIRL-DNVKMAVLDEADEMLNMGFIDDIEAILAQIPKERQTLLFSATM 185
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLL-----KLNL 264
+ + ++NP I++++ + V Q+ +++ E K +L LL +L +
Sbjct: 186 PAPIQRMAEKFMKNPQIVRVQSKEMT-VPQIEQFYLEVHEKNKFDVLTRLLDIQSPELAI 244
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
V G+T V+ + + L+ Y+ + ++ +L R + +F +GL DV++A+D
Sbjct: 245 VFGRTKRRVDELSEALNLRGYMAEG------IHGDLSQAKRLSVLRKFKEGLIDVLVATD 298
Query: 325 EKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384
A RG+D V++V NFD P D + Y+HR GRT R
Sbjct: 299 VAA-----------------------RGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAG 335
Query: 385 NQGTALSFVSLREQ 398
G A++FV+ RE+
Sbjct: 336 KTGMAMTFVTPREK 349
>gi|197119659|ref|YP_002140086.1| ATP-dependent RNA helicase RhlE [Geobacter bemidjiensis Bem]
gi|197089019|gb|ACH40290.1| ATP-dependent RNA helicase RhlE [Geobacter bemidjiensis Bem]
Length = 471
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 112/363 (30%), Positives = 189/363 (52%), Gaps = 33/363 (9%)
Query: 32 AIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQE 91
I +G++ PT IQ +AIP ++ +DVL A+TG+GKT AF +PM+ +++ ++
Sbjct: 15 GIEAMGYVTPTPIQLQAIPSVISGQDVLGLAQTGTGKTAAFGLPMLHRLVQEERG----H 70
Query: 92 TKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATP 151
+ LVL+P++EL Q++ + + + ++ V + V+++ Q L E +IVVA P
Sbjct: 71 VRGLVLAPTRELAEQINDALNGMGKQTR--LRSVTVYGGVNINTQIKKLKEGAEIVVACP 128
Query: 152 ARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSE 211
R L H+ T+DL S +EI+++DEAD +F G+ D++ +L+ LP Q ++ SAT+ +
Sbjct: 129 GRLLDHISQGTIDL-SRVEILVLDEADQMFDMGFLPDVRKILRALPGKRQNLMFSATMPD 187
Query: 212 DVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTII 271
D+ L H ILRNPV +++ AP + ++H + K +L+ +LK + +I
Sbjct: 188 DIRRLAHEILRNPVTVQVSR--TAPAATVSHALYPVGQHLKTPLLFEMLKHTDTE-SVLI 244
Query: 272 FVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETP 331
F T + ++ LE+ L L R A+ F G + +++A+D A
Sbjct: 245 FTKTKHRAKRVGEQLEKAGYKATSLQGNLSQNRRQAALDGFRDGTFQIMVATDIAA---- 300
Query: 332 QINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALS 391
RGID +S+VIN+D P + Y HR GRT R G A +
Sbjct: 301 -------------------RGIDVSLISHVINYDIPDTPEAYTHRIGRTGRAAKTGDAFT 341
Query: 392 FVS 394
V+
Sbjct: 342 MVT 344
>gi|85860692|ref|YP_462894.1| ATP-dependent RNA helicase [Syntrophus aciditrophicus SB]
gi|85723783|gb|ABC78726.1| ATP-dependent RNA helicase [Syntrophus aciditrophicus SB]
Length = 423
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 121/386 (31%), Positives = 204/386 (52%), Gaps = 36/386 (9%)
Query: 21 FTFTLFCIPLQ---AIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMI 77
+FT F + Q I LG+ PT IQ ++IP I+Q +DV+ A+TG+GKT AFA+P++
Sbjct: 1 MSFTQFNLHPQINAGIEALGYKTPTPIQMQSIPAIIQGRDVMGLAQTGTGKTAAFALPIL 60
Query: 78 QKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQE 137
Q+++N + +AL+++P++EL Q++++I E M S +K V + V + Q
Sbjct: 61 QRLMN----GPGKMVRALIVAPTRELAEQINESINE--MSRSTKLKSVALYGGVSKNPQI 114
Query: 138 PLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLP 197
L + +I+VA P R L + DL S +E+ ++DEAD +F G+ +++ + K LP
Sbjct: 115 EKLRQGAEIIVACPGRLLDLVAQGVADL-SGIEVFVLDEADRMFDMGFLPEIRKITKQLP 173
Query: 198 KLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILY 257
+ Q +L SAT+ D+ SL IL +P+ +++ PVS ++H ++ K +L
Sbjct: 174 EKRQTLLFSATMPADIRSLAKDILHDPLTIRIGND--IPVSTVSHTLYPVEQHLKTALLI 231
Query: 258 TLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLY 317
LLK + ++F T + ++ + +++ L +L R A+ F +G Y
Sbjct: 232 KLLKETDTE-SVLVFARTKHRTTRVAMQMKKAGFPVSSLQGDLSQNQRQTALNGFREGKY 290
Query: 318 DVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRA 377
++IA+D A RGID +S+VIN+D P ++ Y HR
Sbjct: 291 RILIATDIAA-----------------------RGIDVTRISHVINYDMPDTVEAYTHRI 327
Query: 378 GRTARGKNQGTALSFVSLREQDLMND 403
GRT R G A SFV+ E+DL++
Sbjct: 328 GRTGRATKSGDAFSFVTSEERDLVDS 353
>gi|340786226|ref|YP_004751691.1| ATP-dependent RNA helicase [Collimonas fungivorans Ter331]
gi|340551493|gb|AEK60868.1| ATP-dependent RNA helicase [Collimonas fungivorans Ter331]
Length = 506
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 138/498 (27%), Positives = 234/498 (46%), Gaps = 50/498 (10%)
Query: 10 PTLIQVYFELPFTFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKT 69
PT V F F L L+A+ G++ PT IQ AIP++LQ +DV+ A+TG+GKT
Sbjct: 23 PTTPTVRFA---DFGLSPDILRALNDQGYVHPTPIQAEAIPVVLQGRDVMGAAQTGTGKT 79
Query: 70 GAFAIPMIQKII---NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVD 126
F++P+IQ ++ N + +AL+L+P++EL +Q+ +N++ ++
Sbjct: 80 AGFSLPIIQLLLAHANTSASPARHPVRALILTPTRELADQVAENVKAYCRHTP--LRSTV 137
Query: 127 ISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYE 186
+ VD++ Q L +IV+ATP R L H++ KTL+L S +I+++DEAD + G+
Sbjct: 138 VFGGVDIAPQTAALRSGIEIVIATPGRLLDHVQQKTLNL-SQTQILVMDEADRMLDMGFL 196
Query: 187 DDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEP-AIAPVSQLAHYHI 245
D++ ++ LPK Q ++ SAT S ++ L L+NPV +++ A A YH+
Sbjct: 197 PDLQRIINLLPKERQNLMFSATFSGEIKKLAATFLKNPVTIEVARSNATADNVTQTMYHV 256
Query: 246 LAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKAR 305
Q +A + Y + + NL Q I+F NT KL +LE ++ ++ + R
Sbjct: 257 NEQTKAEA-VSYIIRERNLKQ--VIVFSNTKIGASKLARHLENEGVNASAIHGDKTQNER 313
Query: 306 CHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFD 365
A+ F +G +V++A+D A RG+D + VINFD
Sbjct: 314 MAALEAFKRGEIEVLVATDVAA-----------------------RGLDIAELPCVINFD 350
Query: 366 FPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYL 425
P + + Y+HR GRT R G A+S + +++ L+ D + + +Y
Sbjct: 351 LPYNAEDYVHRIGRTGRAGASGDAISLYADKDERLLVD--------------IEKMIKYK 396
Query: 426 MTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRSNYFEDNPTDLETLRHDKALYTVRIQS 485
F+ KP + G A++ P + +H ++ YT S
Sbjct: 397 FVRAELTGFVAKPASAERERSSGRGADARNGRGERGEGRAPASDRSTQHTRSAYTSTPTS 456
Query: 486 HLADVPDYIVPPALKKLA 503
V + + P LA
Sbjct: 457 RKEKVDPWFLKPYEPTLA 474
>gi|440799062|gb|ELR20123.1| DEAD/DEAH box helicase domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 762
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 118/374 (31%), Positives = 205/374 (54%), Gaps = 36/374 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+A LG+ PT +Q +AIP+ LQ KDV A TGSGKT +F +P+++++I+ + ++
Sbjct: 205 LKAVANLGYDRPTPVQSQAIPIALQGKDVCASATTGSGKTASFVLPILERLIH--RDKRI 262
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T+ ++L+P++EL Q H I++L D+ + + VQE L PDIVVA
Sbjct: 263 MATRVVILTPTRELAIQCHSVIEKLAKFT--DITACLVVGGLSNKVQEAALRRHPDIVVA 320
Query: 150 TPARALAHLK-AKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
TP R + HL+ A++ L+ +++I+++DEAD + S G+ D+++ ++KF P Q +L SAT
Sbjct: 321 TPGRIIDHLRNAQSFTLE-TVDILVLDEADRLLSLGFADELEQIIKFCPPNRQTLLFSAT 379
Query: 209 LSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHIL---AQEDEKATILYTLLKLNLV 265
++E+V L L L PV ++L +P + S + I A+E ++ +L L +
Sbjct: 380 MTEEVDRLASLSLNRPVRVRL-DPNMRVASGIQQEFIKIKEAREFDRDAMLLALCTRSF- 437
Query: 266 QGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE 325
+ + +IF + ++LK+ + L+ L R A+ +F G +D ++A+D
Sbjct: 438 KKRVLIFFRAKKEAHRLKVIFGLAGLKAAELHGNLSQNQRLEALEKFRDGNFDYLLATDL 497
Query: 326 KALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKN 385
A RG+D + +IN++ ++ YIHR GRTAR +
Sbjct: 498 AA-----------------------RGLDILGIETIINYNMARTVESYIHRVGRTARWGH 534
Query: 386 QGTALSFVSLREQD 399
G +++F+S EQD
Sbjct: 535 SGKSVTFIS--EQD 546
>gi|387927977|ref|ZP_10130655.1| DEAD/DEAH box helicase domain protein [Bacillus methanolicus PB1]
gi|387587563|gb|EIJ79885.1| DEAD/DEAH box helicase domain protein [Bacillus methanolicus PB1]
Length = 485
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 115/374 (30%), Positives = 208/374 (55%), Gaps = 43/374 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
+++I K+G+ E T IQ + IPL L+NKD++ +A+TG+GKT AF IP+I+K I++ Q
Sbjct: 14 MKSIRKMGFEEATPIQAQTIPLSLENKDLIGQAQTGTGKTAAFGIPLIEK-IDIDQDV-- 70
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ +V++P++EL Q+ + + ++ + + + I D+S Q L +RP I+V
Sbjct: 71 --IQGIVVAPTRELAIQVSEELYKIG--YGKKARVLAIYGGQDISRQIKALKKRPHIIVG 126
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H+ KT+ L ++++ ++DEAD + + G+ DD++A+L +P+ +Q +L SAT+
Sbjct: 127 TPGRILDHINRKTIRL-DNVKMAVLDEADEMLNMGFIDDIEAILAQIPEEHQTLLFSATM 185
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLL-----KLNL 264
+ + ++NP I++++ + V Q+ +++ QE K +L LL +L +
Sbjct: 186 PAPIQRMAEKFMKNPQIVRVQSKEMT-VPQIEQFYLEVQEKNKFDVLTRLLDIQSPELAI 244
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
V G+T V+ + + L+ Y+ + ++ +L R + +F +G DV++A+D
Sbjct: 245 VFGRTKRRVDELSEALNLRGYMAEG------IHGDLSQAKRLSVLRKFKEGSIDVLVATD 298
Query: 325 EKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384
A RG+D V++V NFD P D + Y+HR GRT R
Sbjct: 299 VAA-----------------------RGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAG 335
Query: 385 NQGTALSFVSLREQ 398
G A++FV+ RE+
Sbjct: 336 KTGMAMTFVTPREK 349
>gi|253699589|ref|YP_003020778.1| DEAD/DEAH box helicase [Geobacter sp. M21]
gi|251774439|gb|ACT17020.1| DEAD/DEAH box helicase domain protein [Geobacter sp. M21]
Length = 453
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 111/363 (30%), Positives = 190/363 (52%), Gaps = 33/363 (9%)
Query: 32 AIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQE 91
I +G++ PT IQ +AIP ++ +DVL A+TG+GKT AF +PM+ +++ ++
Sbjct: 15 GIEAMGYVTPTPIQLQAIPSVVSGQDVLGLAQTGTGKTAAFGLPMLHRLVQEERG----H 70
Query: 92 TKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATP 151
+ LVL+P++EL Q+++ + + + ++ + + V+++ Q L E +IVVA P
Sbjct: 71 VRGLVLAPTRELAEQINEALNGMGKQTR--LRSITVYGGVNINTQIKKLKEGAEIVVACP 128
Query: 152 ARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSE 211
R L H+ T+DL S +EI+++DEAD +F G+ D++ +L+ LP Q ++ SAT+ +
Sbjct: 129 GRLLDHISQGTIDL-SKVEILVLDEADQMFDMGFLPDVRKILRALPGKRQNLMFSATMPD 187
Query: 212 DVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTII 271
D+ L H ILRNPV +++ AP + ++H + K +L+ +LK + +I
Sbjct: 188 DIRRLAHEILRNPVTVQVSR--TAPAATVSHALYPVGQHLKTPLLFEMLKHTDTE-SVLI 244
Query: 272 FVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETP 331
F T + ++ LE+ L L R A+ F G + +++A+D A
Sbjct: 245 FTKTKHRAKRVGEQLEKAGYKATSLQGNLSQNRRQAALDGFRDGTFQIMVATDIAA---- 300
Query: 332 QINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALS 391
RGID +S+VIN+D P + Y HR GRT R G A +
Sbjct: 301 -------------------RGIDVSLISHVINYDIPDTPEAYTHRIGRTGRAAKTGDAFT 341
Query: 392 FVS 394
V+
Sbjct: 342 MVT 344
>gi|160880145|ref|YP_001559113.1| DEAD/DEAH box helicase [Clostridium phytofermentans ISDg]
gi|160428811|gb|ABX42374.1| DEAD/DEAH box helicase domain protein [Clostridium phytofermentans
ISDg]
Length = 483
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 128/392 (32%), Positives = 203/392 (51%), Gaps = 48/392 (12%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII---NLKQT 86
+QA++ L ++EPT IQE+ IPL L+ KD++ +++TGSGKT AFAIP+ + I+ NL Q
Sbjct: 16 IQALSMLHYIEPTPIQEKVIPLALEGKDIIAKSKTGSGKTAAFAIPICESIVWEENLPQ- 74
Query: 87 AQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDI 146
ALVL P++EL Q+ I + + VK + Q L ++ I
Sbjct: 75 -------ALVLEPTRELAYQVKDEI--FNVGRMKRVKVPVVFGGFPFDKQALTLKQKSHI 125
Query: 147 VVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
VV TP R L H + TL S+++ VIIDEADL+ G+ DD+K +L +LP+ +L S
Sbjct: 126 VVGTPGRVLDHCETGTLKC-SNVKYVIIDEADLMLDMGFLDDVKRILSYLPENITIMLFS 184
Query: 207 ATLSEDVLSLKHLILRNPVILKLEEP--AIAPVSQLAHYHILAQEDEKATILYTLLKLNL 264
AT+ E + +L + +PV +KLE+ + + QL + + +ED+ L L K N
Sbjct: 185 ATMGEALYALTDEFMNSPVEVKLEDGTETVDSIEQLGCF--VTEEDKYELFLRMLYKNNP 242
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
+IF T + L L++ K+ +L+ + K R H + F G + +IA+D
Sbjct: 243 TN--AMIFCGTREMVEVLYYKLKKEKVWCGMLHGLIDQKQRIHTIDDFRTGGFRYLIATD 300
Query: 325 EKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384
A RG+DF +++VIN+D P+ + Y+HR GRT R
Sbjct: 301 VAA-----------------------RGVDFDDITHVINYDLPMSKETYVHRIGRTGRNG 337
Query: 385 NQGTALSFVSLREQDLMN-----DGTALSFVS 411
G A+SF+ E+ +++ GT + V+
Sbjct: 338 KSGKAISFIREEEKKMLSLIEKFTGTPIEIVT 369
>gi|296273966|ref|YP_003656597.1| DEAD/DEAH box helicase [Arcobacter nitrofigilis DSM 7299]
gi|296098140|gb|ADG94090.1| DEAD/DEAH box helicase domain protein [Arcobacter nitrofigilis DSM
7299]
Length = 480
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 124/375 (33%), Positives = 203/375 (54%), Gaps = 34/375 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AI G+++P+ IQE+AIP+IL+ DVL A+TG+GKT F +P++Q I++ K++
Sbjct: 13 LKAIKDKGYIKPSPIQEQAIPIILEKHDVLAGAQTGTGKTAGFTLPLLQ-ILSKKESNNT 71
Query: 90 Q-ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
+ E +AL+L+P++EL Q+ +++ + +K I V ++ Q+ L+ + DIV+
Sbjct: 72 KPEIRALILTPTRELAAQVAQSVDDYGKYLP--LKTAVIFGGVGINPQKALIRKGVDIVI 129
Query: 149 ATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
ATP R L H++ KT+D+ S +E I+DEAD + G+ D++ VL LP Q +L SAT
Sbjct: 130 ATPGRLLDHIEQKTIDI-SHVEHFILDEADRMLDMGFIRDIRKVLALLPSHRQNLLFSAT 188
Query: 209 LSEDVLSLKHLILRNPVILKLEEPAIAP--VSQLAHYHILAQEDEKATILYTLLKLNLVQ 266
S+++ L IL P ++++ + VSQ+ H L +D K T+L L+K +
Sbjct: 189 FSDEIKKLSDGILNKPKLIEVARRNTSSEMVSQVIH---LVDKDRKKTLLSKLIKEGDWR 245
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
+ ++F T KL LE I+ ++ AR A+ F G V++A+D
Sbjct: 246 -QVLVFTRTKHGANKLSQQLEIDGITATAIHGNKSQGARTKALADFKAGAVRVLVATDIA 304
Query: 327 ALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQ 386
A RGID + +V+NF+ P + Y+HR GRT R N+
Sbjct: 305 A-----------------------RGIDIDQLPHVVNFELPNVAEDYVHRIGRTGRAGNE 341
Query: 387 GTALSFVSLREQDLM 401
G A+S V + E D +
Sbjct: 342 GQAVSLVCVDEHDYL 356
>gi|421075656|ref|ZP_15536663.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans JBW45]
gi|392526215|gb|EIW49334.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans JBW45]
Length = 484
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 118/369 (31%), Positives = 205/369 (55%), Gaps = 37/369 (10%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ 90
QA+ LG+ T +QE+ IPL L KD++VR++TGSGKT AFAIP+ +KI ++ QV
Sbjct: 17 QALEGLGYEILTKVQEKVIPLALAQKDIIVRSQTGSGKTAAFAIPICEKIRVEQKKPQV- 75
Query: 91 ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVAT 150
LVL+P++EL QL ++I + + ++C + + + +Q+ L +R ++V T
Sbjct: 76 ----LVLTPTRELAVQLKQDIANIGR--FKRIRCAAVVGRQSMEIQKRELKQRVHVIVGT 129
Query: 151 PARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLS 210
P R L HL+ K+++++ ++ +IIDEAD + G+ + ++AV+K LP +L SAT+
Sbjct: 130 PGRTLDHLERKSMNVE-EVQYLIIDEADKMLDMGFIEQVEAVIKMLPNNRVTMLFSATMP 188
Query: 211 EDVLSLKHLILRNPVILKL--EEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGK 268
E + + ++NP+ +++ E P++ + Q ++ +E+EK T++ ++++
Sbjct: 189 EKIQEICRQYMKNPIKVEIDSENPSLQNIGQ---WYYSVEENEKLTLITQVIQIER-PDT 244
Query: 269 TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL 328
I+F NT DK L L++ S L+ + + R ++ F +G + +IA+D A
Sbjct: 245 CILFCNTRDKVEMLLTKLKEKGYSCGSLHGGMEQRDRLDSIQSFKRGEFQFLIATDVAA- 303
Query: 329 ETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGT 388
RGI +S V+N+D PLD + Y+HR GRT R N GT
Sbjct: 304 ----------------------RGIHIDDISLVVNYDMPLDNESYVHRIGRTGRAGNVGT 341
Query: 389 ALSFVSLRE 397
A++FV+ E
Sbjct: 342 AITFVTRME 350
>gi|444318547|ref|XP_004179931.1| hypothetical protein TBLA_0C06160 [Tetrapisispora blattae CBS 6284]
gi|387512972|emb|CCH60412.1| hypothetical protein TBLA_0C06160 [Tetrapisispora blattae CBS 6284]
Length = 757
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 124/384 (32%), Positives = 202/384 (52%), Gaps = 35/384 (9%)
Query: 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII 81
T +L L+ +A LG+ +P+ IQ AIP+ L KD++ A TGSGKT AF IP+I+++
Sbjct: 240 TLSLSRPVLKGLAALGYSKPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIERL- 298
Query: 82 NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQV---DVSVQEP 138
L + A+V T+ +VL+P++EL Q + ++ K + V V V ++ QE
Sbjct: 299 -LYKPAKVTSTRVIVLTPTRELAIQ----VSDVGKKVGKFVNGVTFGLAVGGLNLRQQEQ 353
Query: 139 LLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPK 198
L RPDIVVATP R + H++ S+EI++IDEAD + G++D++ ++ LP
Sbjct: 354 QLKSRPDIVVATPGRFIDHIRNSASFNVDSVEILVIDEADRMLEDGFQDELNEIMSLLPS 413
Query: 199 LYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHY-HILAQEDEKATILY 257
Q +L SAT++ + L L L+ PV + ++ P A + + I +++ K +LY
Sbjct: 414 KRQTLLFSATMNSKIKQLISLSLKKPVRIMIDPPKQAAAKLVQEFVRIRKRDNLKPALLY 473
Query: 258 TLLKL--NLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQG 315
TL++ Q + ++FV + +KL++ L S L+ L + R +V +F
Sbjct: 474 TLIRKLDGAGQKRIVVFVARKETAHKLRIILGLLGQSVGELHGSLTQEQRLDSVNKF--- 530
Query: 316 LYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIH 375
K+LE P + T+ SRG+D + VIN+D P + Y+H
Sbjct: 531 ----------KSLEVPVLLCTDL----------ASRGLDIPKIEVVINYDMPKSYEIYLH 570
Query: 376 RAGRTARGKNQGTALSFVSLREQD 399
R GRTAR +G +++FV QD
Sbjct: 571 RVGRTARAGREGRSVTFVGEASQD 594
>gi|424780375|ref|ZP_18207249.1| Cold-shock DEAD-box protein A [Catellicoccus marimammalium
M35/04/3]
gi|422843078|gb|EKU27524.1| Cold-shock DEAD-box protein A [Catellicoccus marimammalium
M35/04/3]
Length = 494
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 120/370 (32%), Positives = 204/370 (55%), Gaps = 37/370 (10%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ +G+ E T IQE+ IPL+L KDV+ +A+TG+GKT AF +P IQ I A+
Sbjct: 13 LKSVESVGFEEATPIQEQTIPLVLAGKDVIGQAQTGTGKTAAFGLPTIQNI-----DAKK 67
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ET+ALV++P++EL Q + + L+ + R +K + D++ Q +L + P IVV
Sbjct: 68 EETQALVIAPTRELAIQTQEELYRLSKE--RRLKVQAVYGGADINRQIRILKKNPQIVVG 125
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H++ TL L + ++++++DEAD + + G+ DD+++++K +P Q +L SAT+
Sbjct: 126 TPGRLLDHIQRGTLKL-NHVKVLVLDEADEMLNMGFLDDIESIIKSVPNDRQTLLFSATM 184
Query: 210 SEDVLSLKHLILRNP--VILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
ED+ + ++NP V +K +E + + Q Y + +E EK IL LL ++ +
Sbjct: 185 PEDIKRIGVQFMKNPEHVQIKAKEMTASLIDQ---YFMRVKEFEKFDILTRLLDVHTPE- 240
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
+IIF T + +L LE ++ +L + R + F +G D+++A+D A
Sbjct: 241 LSIIFGRTKRRVDELSRALESRGYKAEGIHGDLSQQKRMDVLKAFKKGELDILVATDVAA 300
Query: 328 LETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQG 387
RG+D V++V NFD P D + Y+HR GRT R G
Sbjct: 301 -----------------------RGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKDG 337
Query: 388 TALSFVSLRE 397
+++FV+ E
Sbjct: 338 MSVTFVTPNE 347
>gi|339482299|ref|YP_004694085.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas sp.
Is79A3]
gi|338804444|gb|AEJ00686.1| DEAD/DEAH box helicase domain protein [Nitrosomonas sp. Is79A3]
Length = 493
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 123/383 (32%), Positives = 212/383 (55%), Gaps = 43/383 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKI---INLKQT 86
++AI+ G+ +PT IQE+AIP+IL DV+ A+TG+GKT +F +PM++++ N +
Sbjct: 13 MRAISDQGYTKPTPIQEQAIPIILDGNDVMGGAQTGTGKTASFTLPMLRRLEIYANTSMS 72
Query: 87 AQVQETKALVLSPSKELCNQLHKNIQE----LTMKCSRDVKCVDISEQVDVSVQEPLLVE 142
+AL+L P++EL Q+H++++ L ++ + V+I Q++ +V+ +
Sbjct: 73 PAKHPIRALILVPTRELAVQVHESVKTYGKYLPLRSTVIYGGVNIDAQIN-AVRSGI--- 128
Query: 143 RPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQA 202
+I+VATP R L HL+ KTL L S +EI I+DEAD + G+ D+K +++ LP+ Q
Sbjct: 129 --EILVATPGRLLDHLQQKTLGL-SKIEIFILDEADRMLDMGFMPDIKQIIQLLPEKRQN 185
Query: 203 ILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQED--EKATILYTLL 260
++ SAT SE++ L IL+NPV++++ + VS+L H++ D K +L +L+
Sbjct: 186 LMFSATFSEEIKKLASKILKNPVLIEVAKQ--NSVSELI-THVVHPVDTTRKQELLISLI 242
Query: 261 KLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVI 320
K + + ++F T L +L IS+ ++ + R A+ F Q L V+
Sbjct: 243 KRQKLH-QVLVFTRTKQGADHLTKWLNHSGISSAAIHGDRNQLQRTQALTNFKQSLIPVL 301
Query: 321 IASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRT 380
+A+D A RG+D + +++VINF+ P + + Y+HR GRT
Sbjct: 302 VATDVAA-----------------------RGLDIEELTHVINFELPNNPEDYVHRIGRT 338
Query: 381 ARGKNQGTALSFVSLREQDLMND 403
R +G A+S VS E+ L+ D
Sbjct: 339 GRAGTKGFAISLVSQEEKKLLID 361
>gi|429852313|gb|ELA27456.1| ATP-dependent rRNA helicase rrp3 [Colletotrichum gloeosporioides
Nara gc5]
Length = 476
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 121/367 (32%), Positives = 192/367 (52%), Gaps = 35/367 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++A +LG+ PT IQ ++IP LQN+DV+ A TGSGKT AFA+P+IQ +++ +
Sbjct: 65 VEACDRLGYTNPTPIQAQSIPHALQNRDVIGLAETGSGKTAAFALPIIQALLD-----KP 119
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
LVL+P++EL Q+ + + L +++ I +D+ Q L ++P IVVA
Sbjct: 120 SHLFGLVLAPTRELAAQIAASFEALGSLV--NLRVAVIVGGLDMVAQAIALGKKPHIVVA 177
Query: 150 TPARALAHL-KAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
TP R + HL K K L+ SL+ +++DEAD + + + +LKF+P+ + L SAT
Sbjct: 178 TPGRLVDHLEKTKGFSLR-SLKYLVMDEADRLLDMDFGPSIDKILKFIPRERRTFLFSAT 236
Query: 209 LSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGK 268
+S + SL+ LR+PV + + + VS L +I ++K T L L +N GK
Sbjct: 237 MSSKIESLQRASLRDPVRISISSSSHQTVSTLIQNYIFCPHNKKDTYLVYL--VNEYSGK 294
Query: 269 TII-FVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
I+ F TV + +L + L ++ +L AR A+ +F G D+++A+D A
Sbjct: 295 KIVLFTRTVTETQRLAILLRTLGFGAIPIHGQLNQTARLGALNKFRAGSRDILVATDVAA 354
Query: 328 LETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQG 387
RG+D V VINFD P D + Y+HR GRTAR G
Sbjct: 355 -----------------------RGLDIPLVDVVINFDIPSDSKTYVHRVGRTARAGKSG 391
Query: 388 TALSFVS 394
A++ ++
Sbjct: 392 KAITIMT 398
>gi|423721477|ref|ZP_17695659.1| DEAD/DEAH box helicase family protein [Geobacillus
thermoglucosidans TNO-09.020]
gi|383365528|gb|EID42823.1| DEAD/DEAH box helicase family protein [Geobacillus
thermoglucosidans TNO-09.020]
Length = 465
Score = 188 bits (478), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 121/390 (31%), Positives = 208/390 (53%), Gaps = 47/390 (12%)
Query: 13 IQVYFELPFTFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAF 72
+ ++EL + L ++AI ++G+ E T IQ IPL LQNKDV+ +A+TG+GKT AF
Sbjct: 1 MTTFYELGLSNEL----MKAIRRMGFEETTPIQAETIPLSLQNKDVIGQAQTGTGKTAAF 56
Query: 73 AIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVD 132
IP+I+K+ + Q LV++P++EL Q+ + + ++ + V+ + I D
Sbjct: 57 GIPLIEKVDVTNEAIQ-----GLVVAPTRELAIQVSEELYKIG--AVKRVRVLPIYGGQD 109
Query: 133 VSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAV 192
+ Q L +RP I+V TP R + H+ KTL L+ ++ V++DEAD + + G+ DD++A+
Sbjct: 110 IGRQIRALKKRPHIIVGTPGRIIDHINRKTLHLE-NVHTVVLDEADEMLNMGFIDDIEAI 168
Query: 193 LKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEK 252
L +P+ Q +L SAT+ E + + + P I+K++ + V + Y++ QE +K
Sbjct: 169 LSNVPEKRQTLLFSATMPEPIRRIAERFMNKPQIVKVKAKEMT-VPNIQQYYLEVQEKKK 227
Query: 253 ATILYTLL-----KLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCH 307
IL LL +L +V G+T V+ + + L+ Y + ++ +L R
Sbjct: 228 FDILTRLLDIQAPELAIVFGRTKRRVDELAEALNLRGYAAEG------IHGDLSQAKRLS 281
Query: 308 AVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFP 367
+ +F +G ++++A+D A RG+D V++V NFD P
Sbjct: 282 VLRKFKEGSIEILVATDVAA-----------------------RGLDISGVTHVYNFDIP 318
Query: 368 LDIQCYIHRAGRTARGKNQGTALSFVSLRE 397
D + Y+HR GRT R G A++FV+ RE
Sbjct: 319 QDPESYVHRIGRTGRAGKTGVAMTFVTPRE 348
>gi|312112527|ref|YP_003990843.1| DEAD/DEAH box helicase [Geobacillus sp. Y4.1MC1]
gi|336236996|ref|YP_004589612.1| DEAD/DEAH box helicase [Geobacillus thermoglucosidasius C56-YS93]
gi|311217628|gb|ADP76232.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y4.1MC1]
gi|335363851|gb|AEH49531.1| DEAD/DEAH box helicase domain protein [Geobacillus
thermoglucosidasius C56-YS93]
Length = 465
Score = 188 bits (478), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 121/390 (31%), Positives = 208/390 (53%), Gaps = 47/390 (12%)
Query: 13 IQVYFELPFTFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAF 72
+ ++EL + L ++AI ++G+ E T IQ IPL LQNKDV+ +A+TG+GKT AF
Sbjct: 1 MTTFYELGLSNEL----MKAIRRMGFEETTPIQAETIPLSLQNKDVIGQAQTGTGKTAAF 56
Query: 73 AIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVD 132
IP+I+K+ + Q LV++P++EL Q+ + + ++ + V+ + I D
Sbjct: 57 GIPLIEKVDVTNEAIQ-----GLVVAPTRELAIQVSEELYKIG--AVKRVRVLPIYGGQD 109
Query: 133 VSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAV 192
+ Q L +RP I+V TP R + H+ KTL L+ ++ V++DEAD + + G+ DD++A+
Sbjct: 110 IGRQIRALKKRPHIIVGTPGRIIDHINRKTLHLE-NVHTVVLDEADEMLNMGFIDDIEAI 168
Query: 193 LKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEK 252
L +P+ Q +L SAT+ E + + + P I+K++ + V + Y++ QE +K
Sbjct: 169 LSNVPEKRQTLLFSATMPEPIRRIAERFMNEPQIVKVKAKEMT-VPNIQQYYLEVQEKKK 227
Query: 253 ATILYTLL-----KLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCH 307
IL LL +L +V G+T V+ + + L+ Y + ++ +L R
Sbjct: 228 FDILTRLLDIQAPELAIVFGRTKRRVDELAEALNLRGYAAEG------IHGDLSQAKRLS 281
Query: 308 AVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFP 367
+ +F +G ++++A+D A RG+D V++V NFD P
Sbjct: 282 VLRKFKEGSIEILVATDVAA-----------------------RGLDISGVTHVYNFDIP 318
Query: 368 LDIQCYIHRAGRTARGKNQGTALSFVSLRE 397
D + Y+HR GRT R G A++FV+ RE
Sbjct: 319 QDPESYVHRIGRTGRAGKTGVAMTFVTPRE 348
>gi|410901863|ref|XP_003964414.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like [Takifugu
rubripes]
Length = 471
Score = 188 bits (477), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 119/365 (32%), Positives = 191/365 (52%), Gaps = 34/365 (9%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ 90
+A +LGW PT IQ A+P+ LQ KDV+ A TGSGKTGAFA+P++Q ++ A Q
Sbjct: 51 EACDQLGWKSPTKIQIEAVPVALQGKDVIGLAETGSGKTGAFALPILQSLL-----ASPQ 105
Query: 91 ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVAT 150
LVL+P++EL Q+ + + L S VKC I +D+ Q +L ++P IV+AT
Sbjct: 106 RLHTLVLTPTRELAFQISEQFEALG--SSIGVKCAVIVGGIDMMSQSLVLAKKPHIVIAT 163
Query: 151 PARALAHLK-AKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
P R + HL+ K L+ +L+ +++DEAD + + +E ++ +LK +P+ + L SAT+
Sbjct: 164 PGRLIDHLENTKGFTLR-ALKFLVMDEADRILNMDFETEVDKILKVIPRERRTFLFSATM 222
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
++ V L+ L++PV + + V +L Y+I K L ++L +L
Sbjct: 223 TKKVQKLQRAALKDPVKCAV-STKYSTVDKLQQYYIFIPSKYKDCYLVSILN-DLAGNSF 280
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
IIF +T + ++ L L I+ L+ ++ R A+ +F V++A+D
Sbjct: 281 IIFCSTCNNAQRVALLLRNLGITAISLHGQMSQNKRLGALNKFKSKSRSVLLATDV---- 336
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D V VIN+D P + YIHR GRTAR G +
Sbjct: 337 -------------------ASRGLDIPHVDCVINYDIPTHSKDYIHRVGRTARAGRSGKS 377
Query: 390 LSFVS 394
++FV+
Sbjct: 378 ITFVT 382
>gi|393775871|ref|ZP_10364176.1| atp-dependent rna helicase [Ralstonia sp. PBA]
gi|392717127|gb|EIZ04696.1| atp-dependent rna helicase [Ralstonia sp. PBA]
Length = 507
Score = 188 bits (477), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 115/388 (29%), Positives = 205/388 (52%), Gaps = 33/388 (8%)
Query: 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII 81
+F L L+AI + G+ T IQ +AIP+++Q +DV+ A+TG+GKT F++P+IQ+++
Sbjct: 13 SFGLHADILRAITEQGYRVATPIQAQAIPVVMQGRDVMGAAQTGTGKTAGFSLPIIQRLL 72
Query: 82 NLKQTAQV---QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEP 138
T+ +AL+L+P++EL +Q++ N+ + + ++ + VD++ Q
Sbjct: 73 PFASTSTSPARHPVRALMLTPTRELADQVYDNVAKYAKHTA--LRSTVVFGGVDMNPQTA 130
Query: 139 LLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPK 198
L +I+VATP R L H++ KT++L S ++++++DEAD + G+ D++ +L LP
Sbjct: 131 ELRRGVEILVATPGRLLDHVQQKTVNL-SQVQMLVLDEADRMLDMGFLPDLQRILNLLPA 189
Query: 199 LYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYT 258
Q +L SAT S D+ L LR+PV +++ A + ++ + ++A +++
Sbjct: 190 QRQTLLFSATFSGDIKKLAASYLRDPVTIEVARSNSASSNVTQQVFMVPEARKQAAVVH- 248
Query: 259 LLKLNLVQG---KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQG 315
LLK QG + I+F N+ C +L LE+ I+ ++ + R + F QG
Sbjct: 249 LLKQRAEQGLPKQCIVFTNSKLGCSRLARQLEREGINASAIHGDKTQSERMQTLEGFKQG 308
Query: 316 LYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIH 375
D ++A+D A RG+D + VINFD P + + Y+H
Sbjct: 309 TIDALVATDVAA-----------------------RGLDIADMPCVINFDLPYNAEDYVH 345
Query: 376 RAGRTARGKNQGTALSFVSLREQDLMND 403
R GRT R G A+S + ++ L+ D
Sbjct: 346 RIGRTGRAGATGDAMSLCAPGDERLLAD 373
>gi|322696755|gb|EFY88543.1| ATP-dependent rRNA helicase RRP3 [Metarhizium acridum CQMa 102]
Length = 478
Score = 188 bits (477), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 124/366 (33%), Positives = 194/366 (53%), Gaps = 35/366 (9%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ 90
+A L + PT IQE++IP+ LQN+D++ A TGSGKT AFA+P++Q +++ + Q
Sbjct: 70 EACESLNYKFPTPIQEKSIPVALQNRDIIGLAETGSGKTAAFALPILQALLD-----KPQ 124
Query: 91 ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVAT 150
LVL+P++EL +Q+ ++ + L S ++C I +D+ Q L ++P I+VAT
Sbjct: 125 PLFGLVLAPTRELAHQIGQSFEALGSSIS--LRCAVIVGGLDMVPQAVALGKKPHIIVAT 182
Query: 151 PARALAHL-KAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
P R + HL K K L+ +L+ +++DEAD + + + +LKF+P+ + L SATL
Sbjct: 183 PGRLVDHLEKTKGFSLR-TLKYLVMDEADRLLDMDFGPAIDKLLKFIPRERRTYLFSATL 241
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGK- 268
S V SL+ LR+PV + + VS L ++ + K T L L +N GK
Sbjct: 242 SSKVESLQRASLRDPVRVSVSSNKYQTVSTLLQNLLVIPQMRKDTYLIYL--VNEFTGKS 299
Query: 269 TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL 328
TIIF TV + ++ + L L+ +L AR A+ +F G D+++A+D A
Sbjct: 300 TIIFTRTVWETQRIAILLRTLGFGAIPLHGQLSQSARLGALNKFRSGTRDILVATDVAA- 358
Query: 329 ETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGT 388
RG+D V V+N+D P D + YIHR GRTAR G
Sbjct: 359 ----------------------RGLDISKVDVVLNYDLPQDSKTYIHRVGRTARAGKSGI 396
Query: 389 ALSFVS 394
A+S V+
Sbjct: 397 AISLVT 402
>gi|85000803|ref|XP_955120.1| DEAD-box family (RNA) helicase [Theileria annulata strain Ankara]
gi|65303266|emb|CAI75644.1| DEAD-box family (RNA) helicase, putative [Theileria annulata]
Length = 566
Score = 188 bits (477), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 136/432 (31%), Positives = 219/432 (50%), Gaps = 54/432 (12%)
Query: 42 TLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSK 101
T +Q++AIP+IL +DV+++++TGSGKT A IP++ +++ T + K L+L PS
Sbjct: 49 TPVQQKAIPIILSGRDVMIKSQTGSGKTLAALIPLLNSLLDKSGTFSPFDLKLLILVPSN 108
Query: 102 ELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAK 161
+L NQ+ ++ L KCS + ++E L +IVV P+ A+ LK++
Sbjct: 109 DLINQVTDLLKILLRKCSDRLSVKPLTE---------LSNSLSNIVVTKPSIAVELLKSQ 159
Query: 162 TLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLP-----KLYQAILASATLSEDVLSL 216
L +IIDEADL+F FGY++DM +++ L K +Q++L SATL ++ ++
Sbjct: 160 ------QLLYLIIDEADLLFEFGYKNDMLKLIEILRNSSKFKSFQSVLLSATLDPEIKNI 213
Query: 217 KHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTIIFVNTV 276
+L+L PV + + P + + Y++L ED K LY LLK+ + +IIFVNT
Sbjct: 214 ANLLLFKPVYIDV--PYTPKLGNVKQYYVLVNEDAKLLNLYVLLKMECIPYGSIIFVNTN 271
Query: 277 DKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINST 336
Y L +L + + +++ L K R + FNQGL +I D+ +
Sbjct: 272 KTGYYLYCFLRKLCLDINIISKLLSPKLRHTILQSFNQGLLGSLILIDDDS--------- 322
Query: 337 NNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLR 396
+ E +SRGIDF+ V+ VINFD P + Y HR GRT R G++L+F +
Sbjct: 323 -------EDEFSLSRGIDFKNVNCVINFDQPKSLGIYKHRIGRTGRNYQSGSSLTFFTNE 375
Query: 397 E----QDLMNDGTALSFVSLRE------QDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEV 446
Q L+ GT L+E + +N VNE + D I+ + +
Sbjct: 376 SDQLLQQLVFSGTVSKGSQLKEVIGSENNEDLNGVNEETL------DSEIQEIKIGEEMF 429
Query: 447 KGFEYRAKDAWR 458
+ F YR D +
Sbjct: 430 ESFNYRINDVLK 441
>gi|67527984|ref|XP_661837.1| hypothetical protein AN4233.2 [Aspergillus nidulans FGSC A4]
gi|74681080|sp|Q5B5E7.1|RRP3_EMENI RecName: Full=ATP-dependent rRNA helicase rrp3
gi|40740142|gb|EAA59332.1| hypothetical protein AN4233.2 [Aspergillus nidulans FGSC A4]
gi|259481158|tpe|CBF74430.1| TPA: ATP-dependent rRNA helicase rrp3 (EC 3.6.1.-)
[Source:UniProtKB/Swiss-Prot;Acc:Q5B5E7] [Aspergillus
nidulans FGSC A4]
Length = 465
Score = 187 bits (476), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 124/366 (33%), Positives = 186/366 (50%), Gaps = 36/366 (9%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ 90
+A +G+ PT IQ +AIPL L+ +DV+ A TGSGKT AFA+PM+Q ++ QT
Sbjct: 59 EACENMGYKAPTPIQSQAIPLALEGRDVIGLAETGSGKTAAFALPMLQALMEAPQT---- 114
Query: 91 ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVAT 150
LVL+P++EL Q+ + + T+ + V+C I +D+ Q L ++P I+VAT
Sbjct: 115 -LFGLVLAPTRELAYQISQAFE--TLGSTIGVRCAVIVGGMDMVAQSIALGKKPHIIVAT 171
Query: 151 PARALAHLK-AKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
P R L HL+ K L+ +L+ + IDEAD + + + + +++ LP+ L SAT+
Sbjct: 172 PGRLLDHLENTKGFSLR-NLKYLAIDEADRLLDMDFGESLDKIIRILPRTRHTYLFSATM 230
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
S V SL+ L NPV + + VS L +I K LY + LN G++
Sbjct: 231 STKVESLQRASLSNPVRVSVSS-KYQTVSTLQSSYICIPHKHKN--LYLVYLLNEFAGQS 287
Query: 270 -IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL 328
IIF TV + ++ L L+ +L AR A+ +F D+++A+D A
Sbjct: 288 AIIFTTTVHETQRVAFMLRALGFGAIPLHGQLSQSARLGALGKFRSRSRDILVATDVAA- 346
Query: 329 ETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGT 388
RG+D V V NFD P+D + YIHR GRTAR G
Sbjct: 347 ----------------------RGLDIPSVDVVFNFDLPMDSKTYIHRVGRTARAGKSGV 384
Query: 389 ALSFVS 394
A+SFV+
Sbjct: 385 AISFVT 390
>gi|322420867|ref|YP_004200090.1| DEAD/DEAH box helicase [Geobacter sp. M18]
gi|320127254|gb|ADW14814.1| DEAD/DEAH box helicase domain protein [Geobacter sp. M18]
Length = 467
Score = 187 bits (476), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 112/370 (30%), Positives = 194/370 (52%), Gaps = 33/370 (8%)
Query: 32 AIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQE 91
+ +G+L PT IQ +AIP ++ +DVL A+TG+GKT AF +P++ +++ + +
Sbjct: 15 GVEAVGYLTPTPIQLQAIPPVMAGQDVLGLAQTGTGKTAAFGLPVLHRLVEGGRG----Q 70
Query: 92 TKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATP 151
+ALVL+P++EL Q+++++ L + +K + + V+++ Q L E DIVVA P
Sbjct: 71 VRALVLAPTRELAEQINESLNALAQQTR--LKSITVYGGVNINTQIKKLKEGTDIVVACP 128
Query: 152 ARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSE 211
R L H+ T++L S +E++++DEAD +F G+ D++ +L+ LP Q ++ SAT+ +
Sbjct: 129 GRLLDHISQGTVNL-SKVEVLVLDEADQMFDMGFLPDVRKILRALPGKRQNLMFSATMPD 187
Query: 212 DVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTII 271
D+ L H IL PV +++ AP + ++H + K +L+ LLK + +I
Sbjct: 188 DIRRLAHEILCRPVTVQVSR--TAPAATVSHALYPVGQHLKTPLLFELLKHTDTE-SVLI 244
Query: 272 FVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETP 331
F T + ++ LE+ L L R A+ F G Y +++A+D A
Sbjct: 245 FTKTKHRAKRVGEQLEKSGYKATSLQGNLSQNRRQAALDGFRDGTYQIMVATDIAA---- 300
Query: 332 QINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALS 391
RGID +S+VIN+D P + Y HR GRT R G A +
Sbjct: 301 -------------------RGIDVSLISHVINYDIPDTPEAYTHRIGRTGRAAKTGDAFT 341
Query: 392 FVSLREQDLM 401
V+ ++ ++
Sbjct: 342 MVTGEDEAMV 351
>gi|160914649|ref|ZP_02076863.1| hypothetical protein EUBDOL_00656 [Eubacterium dolichum DSM 3991]
gi|158433189|gb|EDP11478.1| DEAD/DEAH box helicase [Eubacterium dolichum DSM 3991]
Length = 472
Score = 187 bits (476), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 124/372 (33%), Positives = 204/372 (54%), Gaps = 37/372 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++A+ LG+ +P +QE IP +L +DV+V+A+TGSGKT +FAIP++Q++I ++ Q
Sbjct: 13 MEALDILGYHKPFAVQEAVIPHLLAKQDVIVQAKTGSGKTASFAIPILQQLIWNEKLPQ- 71
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+L+L+P++EL Q+ ++ K + +K + I + Q+ L +R ++ A
Sbjct: 72 ----SLILAPTRELAMQIQTEFDQIGAK--KRIKSLAIYGKFPFRFQKQDLQQRTHVICA 125
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HL+ T D SS+ V+IDEAD++ G+ D+++AVL +LPK L SAT+
Sbjct: 126 TPGRILDHLREHTFD-ASSIRYVVIDEADIMLDMGFLDEVEAVLDYLPKKRTTALFSATM 184
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQ-LAHY-HILAQEDEKATILYTLLKLNLVQG 267
++++ L + L +P+ + +E A V Q + HY + L Q+D++ +L+ L K +
Sbjct: 185 PKEIIQLANRFLHDPLSIAME--AKQDVHQNIEHYVYKLNQQDKETALLHLLGKETV--E 240
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
I+FV T ++ + L+ I L+ L + R + F G +++ASD A
Sbjct: 241 SAILFVRTQERVENIYQVLKAHHIRVTKLHGGLLQEERLANLKAFRSGEKRILVASDVAA 300
Query: 328 LETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQG 387
RGID +S+VIN DFP + YIHR GRTAR G
Sbjct: 301 -----------------------RGIDIADISHVINVDFPDKKETYIHRLGRTARKDTSG 337
Query: 388 TALSFVSLREQD 399
A+SFV+ R+Q+
Sbjct: 338 KAISFVTARDQE 349
>gi|384156092|ref|YP_005538907.1| ATP-dependent RNA helicase [Arcobacter butzleri ED-1]
gi|345469646|dbj|BAK71097.1| ATP-dependent RNA helicase [Arcobacter butzleri ED-1]
Length = 435
Score = 187 bits (476), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 119/374 (31%), Positives = 202/374 (54%), Gaps = 32/374 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AI + G+ PT IQ ++IP+IL KDVL A+TG+GKT F +P++Q++ + +
Sbjct: 13 LRAIKEEGYTTPTPIQSKSIPVILSKKDVLAAAQTGTGKTAGFTLPLLQRLKDSNLKDKK 72
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ +AL+L+P++EL Q+ ++++ T K I V ++ Q+ LL + DI++A
Sbjct: 73 TQVRALILTPTRELAAQVAQSVE--TYGKYLPFKSAVIFGGVGINPQKALLKKGVDIIIA 130
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L + +LDL S +E +++DEAD + G+ +D+K +L LPK Q +L SAT
Sbjct: 131 TPGRLLDLISQDSLDL-SKIEFLVLDEADRMLDMGFINDIKKILAILPKQRQNLLFSATF 189
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAP--VSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
S ++ L +L++PV++++ + A V Q+ H+ +D K +L L+ N Q
Sbjct: 190 SNEIKKLADGLLKSPVLVEVSKANSASFKVEQVVHH---VDKDRKKELLLHLVNKNSWQ- 245
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
+ ++F T KL L + KI++ ++ AR A+ F G V++A+D A
Sbjct: 246 QVLVFTRTKHGANKLSEALVKDKITSAAIHGNKSQGARTKALDDFKNGKVRVLVATDIAA 305
Query: 328 LETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQG 387
RGID + + +V+NF+ P + Y+HR GRT R +N G
Sbjct: 306 -----------------------RGIDIEQLPHVVNFELPNVAEDYVHRIGRTGRARNNG 342
Query: 388 TALSFVSLREQDLM 401
A+S V + E + +
Sbjct: 343 IAISLVCVDEHEYL 356
>gi|312797197|ref|YP_004030119.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
gi|312168972|emb|CBW75975.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
Length = 555
Score = 187 bits (476), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 122/380 (32%), Positives = 200/380 (52%), Gaps = 40/380 (10%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++A+ +LG+ PT IQ +AIP +L D+L A+TG+GKT F +P+++++ + + T+
Sbjct: 19 VRAVNELGYTTPTPIQRQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILERLSHSRATSGK 78
Query: 90 QETKALVLSPSKELCNQLHKNIQE----LTMKCSRDVKCVDISEQVDVSVQEPLLVERPD 145
+AL+L+P++EL Q+ ++++E L ++ + V I+ Q+D L D
Sbjct: 79 IPVRALILTPTRELAAQVEQSVREYGKYLKLRSTVMFGGVGINPQIDA------LRRGVD 132
Query: 146 IVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILA 205
IVVATP R L HL+ +T+DL SSL+I+++DEAD + G+ D+K VLK+LP Q +L
Sbjct: 133 IVVATPGRLLDHLQQRTIDL-SSLQILVLDEADRMLDMGFIHDIKRVLKYLPSQRQNLLF 191
Query: 206 SATLSEDVLSLKHLILRNPVILKL-EEPAIAPVSQLAHYHILAQEDEKATILYTLLKL-N 263
SAT S+++ +L +L +P ++++ A Y + D K +L L+K N
Sbjct: 192 SATFSDEIKALADNLLDSPALIEVARRNTTAETVTQTIYPV--DRDRKRELLTHLIKAHN 249
Query: 264 LVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIAS 323
Q ++F T +L L + IS ++ AR A+ +F G V++A+
Sbjct: 250 WFQ--VLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQAARTRALSEFKDGTLQVLVAT 307
Query: 324 DEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARG 383
D A RGID + +V+NFD P + Y+HR GRT R
Sbjct: 308 DIAA-----------------------RGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRA 344
Query: 384 KNQGTALSFVSLREQDLMND 403
G A+S V + E L+ D
Sbjct: 345 GATGEAISLVCIDEHQLLTD 364
>gi|374604838|ref|ZP_09677788.1| DEAD/DEAH box helicase [Paenibacillus dendritiformis C454]
gi|374389546|gb|EHQ60918.1| DEAD/DEAH box helicase [Paenibacillus dendritiformis C454]
Length = 517
Score = 187 bits (476), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 125/385 (32%), Positives = 204/385 (52%), Gaps = 38/385 (9%)
Query: 22 TFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQ 78
TF F + LQAI +LG+ E T IQE+AIP+ + +D++ +A+TG+GKT AF IP+I
Sbjct: 3 TFVEFGLEPKLLQAITELGFEEATPIQEKAIPVAMTGRDLIGQAQTGTGKTAAFGIPLIS 62
Query: 79 KIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEP 138
KI + ALV++P++EL Q+ + I +LT + V+ + I D+ Q
Sbjct: 63 KI-----DPSEERVVALVMTPTRELAIQVAEEIGKLTR--FKGVRSLPIYGGQDIGRQIR 115
Query: 139 LLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPK 198
L + P I++ TP R L H+ KT+ L ++ V++DEAD + G+ +D+ ++L +P+
Sbjct: 116 ALKKHPQIIIGTPGRLLDHINRKTIRL-DHVQTVVLDEADEMLDMGFMEDITSILSLVPE 174
Query: 199 LYQAILASATLSEDVLSLKHLILRNPVILKLEEPAI-APVSQLAHYHILAQEDEKATILY 257
Q +L SAT+ ++ L + LR+P + + + AP+ + A+ + E K L
Sbjct: 175 ERQTMLFSATMPPNIQKLANQFLRDPEHVSVMPKQVSAPLIEQAYIEV--PERVKFDALS 232
Query: 258 TLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLY 317
LL + + I+F T + +L L++ S L+ +L R + + +F G
Sbjct: 233 RLLDMESPE-LAIVFGRTKRRVDELSEALQKRGYSADGLHGDLSQNQRDNVMRKFRDGSI 291
Query: 318 DVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRA 377
DV++A+D A RG+D V++VINFD P D + Y+HR
Sbjct: 292 DVLVATDVAA-----------------------RGLDVSGVTHVINFDLPQDPESYVHRI 328
Query: 378 GRTARGKNQGTALSFVSLREQDLMN 402
GRT R +G+A SFV+ RE D +N
Sbjct: 329 GRTGRAGKEGSAWSFVTPREIDHLN 353
>gi|348511400|ref|XP_003443232.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like
[Oreochromis niloticus]
Length = 479
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 119/365 (32%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ 90
+A +LGW PT IQ AIP+ LQ KDV+ A TGSGKTGAFA+P++Q ++ A Q
Sbjct: 50 EACDQLGWKSPTKIQIEAIPVALQGKDVIGLAETGSGKTGAFALPILQSLL-----ASPQ 104
Query: 91 ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVAT 150
LVL+P++EL Q+ + + L S VKC I +D+ Q +L ++P +V+AT
Sbjct: 105 RLHTLVLTPTRELAFQISEQFEAL--GSSIGVKCAVIVGGIDMMSQSLVLAKKPHVVIAT 162
Query: 151 PARALAHLK-AKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
P R + HL+ K L+ +L+ +++DEAD + + +E ++ +LK +P+ + L SAT+
Sbjct: 163 PGRLIDHLENTKGFSLR-ALKFLVMDEADRILNMDFETEVDKILKVIPRERRTFLFSATM 221
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
++ V L+ L++PV + + V +L Y+I K L ++L L
Sbjct: 222 TKKVQKLERAALKDPVKCAV-STKYSTVDKLQQYYIFIPSKYKDCYLVSILN-ELAGNSF 279
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
IIF +T + ++ L L I+ L+ ++ R A+ +F V++A+D
Sbjct: 280 IIFCSTCNTAQRVALLLRNLGITAIPLHGQMSQNKRLGALNKFKSKSRSVLLATDV---- 335
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D V VIN+D P + YIHR GRTAR G +
Sbjct: 336 -------------------ASRGLDIPHVDCVINYDIPTHSKDYIHRVGRTARAGRSGKS 376
Query: 390 LSFVS 394
++FV+
Sbjct: 377 ITFVT 381
>gi|433447995|ref|ZP_20411254.1| DEAD-box ATP-dependent RNA helicase CshA [Anoxybacillus
flavithermus TNO-09.006]
gi|431999627|gb|ELK20547.1| DEAD-box ATP-dependent RNA helicase CshA [Anoxybacillus
flavithermus TNO-09.006]
Length = 471
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 119/384 (30%), Positives = 210/384 (54%), Gaps = 46/384 (11%)
Query: 22 TFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQ 78
TF F + ++A++K+G+ E T IQ IPL LQN+DV+ +A+TG+GKT AF IP+I+
Sbjct: 6 TFKEFGLSPELMKAVSKMGFEEATPIQAATIPLSLQNRDVIGQAQTGTGKTAAFGIPLIE 65
Query: 79 KIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEP 138
K I++ A +A+V++P++EL Q+ + + ++ ++ V+ + I D+ Q
Sbjct: 66 K-IDMNNDA----VQAIVVAPTRELAIQVSEELYKIG--STKRVRVLPIYGGQDIERQIR 118
Query: 139 LLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPK 198
L + P I+V TP R L H++ +TL L+ ++ V++DEAD + + G+ +D++A+L +P
Sbjct: 119 ALKKHPHIIVGTPGRVLDHIQRRTLRLQ-NVHTVVLDEADEMLNMGFVEDIEAILSHVPT 177
Query: 199 LYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYT 258
Q +L SAT+ E + + ++NP +++++ + V + Y+I QE +K L
Sbjct: 178 ERQTLLFSATMPEPIRRIAERFMQNPELVRVKAKEMT-VPNIEQYYIEIQEKKKFDTLTR 236
Query: 259 LL-----KLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFN 313
LL +L +V G+T V+ + + L+ Y + ++ +L R + +F
Sbjct: 237 LLDIQSPELAIVFGRTKRRVDELAEALNLRGYTAEG------IHGDLSQAKRLSVLRKFK 290
Query: 314 QGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCY 373
+G D+++A+D A RG+D V++V NFD P D + Y
Sbjct: 291 EGSIDILVATDVAA-----------------------RGLDISGVTHVYNFDIPQDPESY 327
Query: 374 IHRAGRTARGKNQGTALSFVSLRE 397
+HR GRT R G A++FV+ RE
Sbjct: 328 VHRIGRTGRAGKTGMAITFVTPRE 351
>gi|239825779|ref|YP_002948403.1| DEAD/DEAH box helicase [Geobacillus sp. WCH70]
gi|239806072|gb|ACS23137.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. WCH70]
Length = 466
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 119/373 (31%), Positives = 203/373 (54%), Gaps = 43/373 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++AI ++G+ E T IQ IPL LQNKDV+ +A+TG+GKT AF IP+I+K +++K A
Sbjct: 14 MKAIRRMGFEETTPIQAETIPLSLQNKDVIGQAQTGTGKTAAFGIPLIEK-VDVKNEA-- 70
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ LV++P++EL Q+ + + ++ + V+ + I D+ Q L +RP I+V
Sbjct: 71 --IQGLVVAPTRELAIQVSEELYKIG--AVKRVRVLPIYGGQDIERQIRALKKRPHIIVG 126
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + H+ KTL L ++ V++DEAD + + G+ DD++A+L +P+ Q +L SAT+
Sbjct: 127 TPGRIIDHINRKTLRL-DNVHTVVLDEADEMLNMGFIDDIEAILSNVPEKRQTLLFSATM 185
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLL-----KLNL 264
E + + + P I+K++ + V + Y++ QE +K IL LL +L +
Sbjct: 186 PEPIRRIAERFMNEPHIVKVKAKEMT-VPNIQQYYLEVQEKKKFDILTRLLDIQAPELAI 244
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
V G+T V+ + + L+ Y + ++ +L R + +F +G ++++A+D
Sbjct: 245 VFGRTKRRVDELAEALNLRGYAAEG------IHGDLSQAKRLSVLRKFKEGSIEILVATD 298
Query: 325 EKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384
A RG+D V++V NFD P D + Y+HR GRT R
Sbjct: 299 VAA-----------------------RGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAG 335
Query: 385 NQGTALSFVSLRE 397
G A++FV+ RE
Sbjct: 336 KTGVAMTFVTPRE 348
>gi|383316477|ref|YP_005377319.1| DNA/RNA helicase [Frateuria aurantia DSM 6220]
gi|379043581|gb|AFC85637.1| DNA/RNA helicase, superfamily II [Frateuria aurantia DSM 6220]
Length = 442
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 121/369 (32%), Positives = 192/369 (52%), Gaps = 34/369 (9%)
Query: 37 GWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALV 96
G+ PT IQ AIP +L +DVL A+TG+GKT AFA+P++QK+ + + A ++ +ALV
Sbjct: 20 GYTAPTPIQAEAIPAVLAGRDVLAAAQTGTGKTAAFALPLLQKLGDGARGA--RKPRALV 77
Query: 97 LSPSKELCNQLHKNIQELT--MKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARA 154
L+P++EL Q++ N++ M C+ V I V + Q L D+V+ATP R
Sbjct: 78 LTPTRELTAQVNDNLRSYAKHMHCTSTV----IFGGVGMGNQVQALRRGVDVVIATPGRL 133
Query: 155 LAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSEDVL 214
+ H++ +T+DL S +E++I+DEAD + G+ +K V++ LPK Q +L SAT + +
Sbjct: 134 IDHMQQRTIDL-SGIELLILDEADRMLDMGFLPALKRVVQALPKNRQTLLFSATFAPPIK 192
Query: 215 SLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTIIFVN 274
+L L NPV + + P + H H + ++ +L+ L K + Q T++F
Sbjct: 193 ALAMDFLSNPVEISVAPPNTVNTTISHHVHPVDAAVKRDLLLHVLAKDSRRQ--TLVFSR 250
Query: 275 TVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQIN 334
T KL +L+ + + ++ AR A+ F G V++A+D A
Sbjct: 251 TKHGADKLVKFLDAAGLRSAAIHGNKSQNARTRALADFKSGRTTVLVATDIAA------- 303
Query: 335 STNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVS 394
RGID + VINFD P+ + Y+HR GRT R +G A+S VS
Sbjct: 304 ----------------RGIDIDQLPVVINFDLPMVAEDYVHRIGRTGRAGAEGLAISLVS 347
Query: 395 LREQDLMND 403
E L+ D
Sbjct: 348 HDESGLLRD 356
>gi|315452663|ref|YP_004072933.1| ATP-dependent RNA helicase [Helicobacter felis ATCC 49179]
gi|315131715|emb|CBY82343.1| ATP-dependent RNA helicase,DEAD box helicase family protein
[Helicobacter felis ATCC 49179]
Length = 469
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 117/365 (32%), Positives = 198/365 (54%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L++IA+ G+++P+ IQE+AIP+ILQ +DV+ +A+TG+GKT AFA+P+I NLK V
Sbjct: 30 LKSIAEAGFVQPSPIQEKAIPVILQGRDVIAQAQTGTGKTAAFALPIIH---NLKNDRSV 86
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ AL+++P++EL Q+ I L K SR + + I + Q LL +RP +++A
Sbjct: 87 E---ALIITPTRELAMQISDEIFRLG-KSSR-TRTICIYGGQSIRKQCELLEKRPQVMIA 141
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK K L + ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 142 TPGRLLDHLKNKRLK-HFNPKVVVLDESDEMLDMGFLDDIEEIFDYLPNDAQILLFSATM 200
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+ L + IL++P + + I ++++ + + I+ L K N K+
Sbjct: 201 PPPIRDLANKILQDPASIHIAPANITNADISQRFYVINEHERNEAIMRLLDKEN--HTKS 258
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
IIF+ + +L +L + T L+ ++ +AR ++ F DV++A+D
Sbjct: 259 IIFMRMKREVDELHRFLVERGYKTTPLHGDMEQRARQESIKAFKSKRADVLVATD----- 313
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 314 ------------------VASRGLDISDVSHVFNYHLPLNTESYIHRIGRTGRAGKKGIA 355
Query: 390 LSFVS 394
++ V+
Sbjct: 356 ITLVT 360
>gi|326204124|ref|ZP_08193984.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
DSM 2782]
gi|325985635|gb|EGD46471.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
DSM 2782]
Length = 564
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 121/402 (30%), Positives = 214/402 (53%), Gaps = 36/402 (8%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ 90
AIA +G+ E T IQ ++IP IL+ D++ +A+TG+GKT AF IP ++KI + +
Sbjct: 17 HAIADMGFEEATPIQSQSIPYILEGNDLIGQAQTGTGKTCAFGIPAVEKI-----DSHID 71
Query: 91 ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVAT 150
+ LVL P++EL Q + ++ + +K ++ + + + Q L +RP I++ T
Sbjct: 72 SIQVLVLCPTRELAIQSCEELRNV-LKYKDGIRILPVYGGQPIDRQIMALKKRPQIIIGT 130
Query: 151 PARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLS 210
P R + H++ KTL L+ SL+++++DEAD + + G+ +D+ +L+ +P+ Q IL SAT+
Sbjct: 131 PGRVMDHMRRKTLKLE-SLKMIVLDEADEMLNMGFREDIDTILEKVPEDRQTILFSATMP 189
Query: 211 EDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTI 270
+++L L ++PV +K+ + V + Y++ +E K +L L+ N ++ ++
Sbjct: 190 KEILELTKKYQKDPVHIKIAHKELT-VPSIEQYYLEVKESAKLEVLSRLIDTNDIK-LSL 247
Query: 271 IFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALET 330
+F NT + +L L+ S L+ ++ + R + F +G +D++IA+D A
Sbjct: 248 VFCNTKKRVDELTASLQSRGFSAEALHGDMRQEHRDKVMSLFRKGNFDILIATDVAA--- 304
Query: 331 PQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTAL 390
RGID V V N+D P D + Y+HR GRT R G A
Sbjct: 305 --------------------RGIDVDDVEAVFNYDLPNDEEYYVHRIGRTGRAGRTGKAF 344
Query: 391 SFVSLREQDLMND---GTALSFVSLREQDLMNDVNEYLMTNL 429
+F+S RE + D T + V+++ L N+V E M N+
Sbjct: 345 TFISGREMYKLRDIQRYTKSTIVAMKPPSL-NEVEEKKMLNI 385
>gi|410458653|ref|ZP_11312411.1| DEAD/DEAH box helicase [Bacillus azotoformans LMG 9581]
gi|409931248|gb|EKN68234.1| DEAD/DEAH box helicase [Bacillus azotoformans LMG 9581]
Length = 501
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 116/368 (31%), Positives = 200/368 (54%), Gaps = 33/368 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
+++I +G+ E T IQ IP+ LQ KDV+ +A+TG+GKT AF IPMI+K I++K T
Sbjct: 14 MKSIQAMGFEEATPIQSETIPVSLQGKDVIGQAQTGTGKTAAFGIPMIEK-IDIKNTF-- 70
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ +V++P++EL Q+ + + + + VK + I D++ Q L RP I+V
Sbjct: 71 --IQGIVVAPTRELAIQVAEELNRIGQ--FKGVKALPIYGGQDINRQIRALKNRPQIIVG 126
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + H+ KT+ L+ ++++V++DEAD + + G+ +D++A+LK +P++ Q +L SAT+
Sbjct: 127 TPGRLMDHMNRKTIRLQ-NIQVVVLDEADEMLNMGFIEDIEAILKEVPEVRQTLLFSATM 185
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + + + +PV +K++ + V + Y+I QE +K +L LL + +
Sbjct: 186 PEPIRKIAENFMNDPVQIKVKAKEMT-VPNIEQYYIEMQEKKKFDVLTRLLDMESPE-LA 243
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L L + ++ +L R + +F G +V++A+D A
Sbjct: 244 IVFGRTKRRVDELSEALNTRGYAAEGIHGDLTQAKRSSVLKKFKAGTIEVLVATDVAA-- 301
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
RG+D V++V NFD P D + Y+HR GRT R G A
Sbjct: 302 ---------------------RGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGLA 340
Query: 390 LSFVSLRE 397
+FV+ RE
Sbjct: 341 YTFVTPRE 348
>gi|329121361|ref|ZP_08249987.1| RNA helicase DeaD [Dialister micraerophilus DSM 19965]
gi|327469770|gb|EGF15236.1| RNA helicase DeaD [Dialister micraerophilus DSM 19965]
Length = 497
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 117/368 (31%), Positives = 195/368 (52%), Gaps = 33/368 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++A+A +G+ EP+ IQ+ A+P+ +Q KD++ +A+TG+GKT AF IP++Q+I K Q
Sbjct: 21 MKAVADMGFEEPSPIQKEAVPIAMQGKDLIGQAQTGTGKTAAFGIPILQRIDTSKPGPQ- 79
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
A+VLSP++EL Q + I L ++K + I D+ Q L ++ +I+VA
Sbjct: 80 ----AIVLSPTRELAIQSAEEINHLAQYM--NIKTIPIYGGQDIERQFRALKKKTNIIVA 133
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + H+K KT+DL S+++I ++DE D + G+ DD++ ++ PK Q + SAT+
Sbjct: 134 TPGRLMDHMKRKTIDL-SNVQIAVLDEGDEMVDMGFIDDIRTIMAATPKERQTLFFSATM 192
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+ L + L P I+K+ + A + + +I + +K L LL + +
Sbjct: 193 PAPIRELANSFLNEPEIVKI-KAATVTIDLIEQEYIELPDRQKFDALCRLLDMQSPE-LA 250
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+FV T + ++ L++ S L+ +L + R + QF +G D ++A+D A
Sbjct: 251 IVFVRTKRRADEVTEALKKRAYSAEGLHGDLSQQKRDSVIRQFKEGTIDFLVATDVAA-- 308
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
RG+D V++V NFD P D + Y+HR GRT R G A
Sbjct: 309 ---------------------RGLDISGVTHVYNFDMPQDPEIYVHRVGRTGRAGKTGLA 347
Query: 390 LSFVSLRE 397
+FV RE
Sbjct: 348 TTFVISRE 355
>gi|353241604|emb|CCA73408.1| probable DEAD box protein (putative RNA helicase) [Piriformospora
indica DSM 11827]
Length = 458
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 132/381 (34%), Positives = 197/381 (51%), Gaps = 39/381 (10%)
Query: 18 ELPFTFTLFCIP--LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIP 75
E PF TL IP LQ + LG+ T IQ +AIP LQ++D++ A+TGSGKT AFA+P
Sbjct: 30 ETPFN-TLGLIPELLQTVEALGYKNATSIQAQAIPSALQDRDIIGVAKTGSGKTAAFALP 88
Query: 76 MIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSV 135
++QK + A +L+P++EL Q+ K + L V+C I +D+
Sbjct: 89 ILQKWWE-----DPKPLYACILAPTRELAYQIQKQFEALGANLG--VRCCCIVGGLDIMA 141
Query: 136 QEPLLVERPDIVVATPARALAHLK-AKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLK 194
Q+ L +RP IVVATP R HL+ K L+ SL+ +++DEAD + + + +LK
Sbjct: 142 QKVALAKRPHIVVATPGRLQDHLENTKGFSLR-SLKYLVLDEADRLLDMDFGPIIDKILK 200
Query: 195 FLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKAT 254
+PK + +L SAT+S V L+ L NPV +++ + VS L Y++ K
Sbjct: 201 VIPKERRTMLFSATMSTKVKRLQRASLVNPVKVEVSS-KYSTVSTLQQYYVFGPHMRKEV 259
Query: 255 ILYTLLKLNLVQGKTII-FVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFN 313
+ TL++ + GK+II F NTV+ +L L L I L+S+L R ++ +F
Sbjct: 260 NMITLVR--SLSGKSIIVFTNTVNDTIRLTLMLRALNIGAIPLHSKLSQSTRLGSLNKFR 317
Query: 314 QGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCY 373
G V+IA+D A RG+D V VIN+ P + + Y
Sbjct: 318 AGGRQVLIATDVAA-----------------------RGLDIPQVDVVINYGVPQNSKDY 354
Query: 374 IHRAGRTARGKNQGTALSFVS 394
IHR GRTAR G A++FV+
Sbjct: 355 IHRVGRTARAGRAGKAITFVT 375
>gi|89093138|ref|ZP_01166088.1| ATP-dependent RNA helicase [Neptuniibacter caesariensis]
gi|89082434|gb|EAR61656.1| ATP-dependent RNA helicase [Neptuniibacter caesariensis]
Length = 417
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 118/361 (32%), Positives = 189/361 (52%), Gaps = 27/361 (7%)
Query: 33 IAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQET 92
++ LG+ EPT IQ++AIP +L+ D++ A TGSGKT F +P+++K+ ++ T
Sbjct: 16 LSSLGYKEPTAIQDKAIPAVLKGHDLIAAAETGSGKTAGFVLPLLEKLHSIPAPGN-NLT 74
Query: 93 KALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPA 152
ALVL P++EL Q+ +++ + C R ++ V I ++ Q L + DIVVATP
Sbjct: 75 HALVLVPTRELAVQVSQSVDRYSENCPRKIRSVAIYGGAAINPQMQSLSKGCDIVVATPG 134
Query: 153 RALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSED 212
R L ++ LDL+ L+ +++DEAD + G+ D++ +L P Q +L SAT +
Sbjct: 135 RLLDLMRKNALDLR-GLKALVLDEADRMLDLGFADELDDILDQTPGNVQTLLFSATFPDK 193
Query: 213 VLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTIIF 272
V L +LRNPV + +++ A P QL I + + +L L+K Q + +IF
Sbjct: 194 VKELTEELLRNPVEISVKQEATLP-DQLHQRAIEVDRNNRTMLLKHLIKQEKWQ-QLLIF 251
Query: 273 VNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQ 332
V + ++L L + I + L+ +L K R A+ F++G ++IA+D A
Sbjct: 252 VGSKRTANNIELKLYRSGIQSSTLHGDLTQKERLGALEDFSKGRCKILIATDLAA----- 306
Query: 333 INSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSF 392
RGID + V+N+D P Y+HRAGRTAR G A+SF
Sbjct: 307 ------------------RGIDIPSLPCVLNYDLPRATSDYVHRAGRTARAGEAGLAISF 348
Query: 393 V 393
V
Sbjct: 349 V 349
>gi|315637497|ref|ZP_07892707.1| ATP-dependent RNA helicase RhlE [Arcobacter butzleri JV22]
gi|315478215|gb|EFU68938.1| ATP-dependent RNA helicase RhlE [Arcobacter butzleri JV22]
Length = 435
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 119/374 (31%), Positives = 201/374 (53%), Gaps = 32/374 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AI + G+ PT IQ ++IP+IL KDVL A+TG+GKT F +P++Q++ + +
Sbjct: 13 LRAIKEEGYTTPTPIQSKSIPVILSKKDVLAAAQTGTGKTAGFTLPLLQRLKDSNLKDKK 72
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ +AL+L+P++EL Q+ ++++ T K I V ++ Q+ LL + DI++A
Sbjct: 73 TQVRALILTPTRELAAQVAQSVE--TYGKYLPFKSAVIFGGVGINPQKALLKKGVDIIIA 130
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L + +LDL S +E +++DEAD + G+ +D+K +L LPK Q +L SAT
Sbjct: 131 TPGRLLDLISQDSLDL-SKIEFLVLDEADRMLDMGFINDIKKILAILPKQRQNLLFSATF 189
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAP--VSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
S ++ L +L++PV++++ + A V Q+ H+ +D K +L L+ N Q
Sbjct: 190 SNEIKKLADGLLKSPVLVEVSKANSASFKVEQVVHH---VDKDRKKELLLHLVNKNSWQ- 245
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
+ ++F T KL L + KI++ ++ AR A+ F G V++A+D A
Sbjct: 246 QVLVFTRTKHGANKLSEALVKDKITSAAIHGNKSQGARTKALDDFKNGKVRVLVATDIAA 305
Query: 328 LETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQG 387
RGID + + +V+NF+ P + Y+HR GRT R N G
Sbjct: 306 -----------------------RGIDIEQLPHVVNFELPNVAEDYVHRIGRTGRAGNNG 342
Query: 388 TALSFVSLREQDLM 401
A+S V + E + +
Sbjct: 343 IAISLVCVDEHEYL 356
>gi|401407050|ref|XP_003882974.1| putative ATP-dependent nucleolar RNA helicase [Neospora caninum
Liverpool]
gi|325117390|emb|CBZ52942.1| putative ATP-dependent nucleolar RNA helicase [Neospora caninum
Liverpool]
Length = 919
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 112/310 (36%), Positives = 187/310 (60%), Gaps = 21/310 (6%)
Query: 32 AIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQE 91
A+ ++ PT +Q + IPL LQ KD+L +ARTGSGKT A+A+P++Q+++ ++ + +
Sbjct: 208 AVQQMQLQHPTHVQAQVIPLALQGKDLLAQARTGSGKTLAYALPLLQRLLERREEEKATQ 267
Query: 92 TK-----ALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDI 146
+ ALVL PSKELC Q+H L C RD+ V+ + P L P I
Sbjct: 268 PRPEGLEALVLVPSKELCLQIHDVFVALLKYC-RDLITVNHTALASSGSLLPFLP--PSI 324
Query: 147 VVATPARALAHLKA-------KTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLP-- 197
++ TPA +A+L K+L L+ +L++++ DEADL+ SFG+E +M +L LP
Sbjct: 325 LIGTPAGVVAYLGKLDSSASIKSL-LQRNLKVLVADEADLLLSFGFESEMARLLACLPAT 383
Query: 198 --KLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHI-LAQEDEKAT 254
+ YQA+L SATL+E+V L+ ++L V++++++ SQL+ +++ L + +K
Sbjct: 384 AERHYQALLVSATLNEEVAQLQQMLLHKAVMVEIDDTLQQASSQLSEFYLSLPKPGDKWV 443
Query: 255 ILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQ 314
+LY LKL+LV K +IF + V Y ++++LE+F IS VL+ L ++R + FN+
Sbjct: 444 VLYAFLKLDLVPRKCLIFTSGVSSAYAVRIFLERFGISCGVLSPTLSLESRQSLIQAFNK 503
Query: 315 GLYDVIIASD 324
GL +++I +D
Sbjct: 504 GLLEILITTD 513
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 92/229 (40%), Gaps = 57/229 (24%)
Query: 340 KRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQD 399
KR D E G RG+D Q V+ V++FD P ++ YIHR GR RG QG ++ VS
Sbjct: 625 KRMPDDEFGSHRGLDLQSVACVLSFDMPRSVRSYIHRIGRAGRGGAQGVSVCLVSQ---- 680
Query: 400 LMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS 459
+ RE L+ + + +KP L +V+ F YR +D R
Sbjct: 681 ----------TAAREVLLLRKLVQLRREGNSGGSTALKPLSLRLQDVECFRYRVEDVCRG 730
Query: 460 -------------------------NYFEDNPTDLETLR------HDKALYTVRIQSHLA 488
++F NP D E LR D+AL + HL
Sbjct: 731 VTKRVIAALVAKELQQEVLRSRKMKDFFRRNPRDEEVLRAACKQLKDRALAG---RGHLQ 787
Query: 489 DVPDYIV---PPALKKLARIEDDGDEDVRAEPITDEEYNKQYEEYKKRS 534
+P Y++ PPA K ++ V A+ + + ++ K+R+
Sbjct: 788 HLPAYLLAQTPPAQKTAVQLA------VEAQAVQGTQATQEKRGLKRRT 830
>gi|322703417|gb|EFY95026.1| ATP-dependent rRNA helicase RRP3 [Metarhizium anisopliae ARSEF 23]
Length = 478
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 122/366 (33%), Positives = 193/366 (52%), Gaps = 35/366 (9%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ 90
+A L + PT IQE++IP+ LQ++D++ A TGSGKT AFA+P++Q +++ + Q
Sbjct: 70 EACESLNYKFPTPIQEKSIPIALQDRDIIGLAETGSGKTAAFALPILQALLD-----KPQ 124
Query: 91 ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVAT 150
LVL+P++EL +Q+ + + L S ++C I +D+ Q L ++P I+VAT
Sbjct: 125 PLFGLVLAPTRELAHQIGQAFEALGSSIS--LRCAVIVGGLDMVPQAVALGKKPHIIVAT 182
Query: 151 PARALAHL-KAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
P R + HL K K L+ +L+ +++DEAD + + + +LKF+P+ + L SATL
Sbjct: 183 PGRLVDHLEKTKGFSLR-TLKYLVMDEADRLLDMDFGPAIDKLLKFIPRERRTYLFSATL 241
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGK- 268
S V SL+ LR+PV + + VS L ++ + K T L L +N GK
Sbjct: 242 SSKVESLQRASLRDPVRVSVSSNKYQTVSTLLQNLLVVPQKRKDTYLIYL--VNEFTGKS 299
Query: 269 TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL 328
TI+F TV + ++ + L L+ +L AR A+ +F G D+++A+D A
Sbjct: 300 TIVFTRTVWETQRIAILLRTLGFGAIPLHGQLSQSARLGALNKFRSGTRDILVATDVAA- 358
Query: 329 ETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGT 388
RG+D V V+N+D P D + YIHR GRTAR G
Sbjct: 359 ----------------------RGLDISKVDVVLNYDLPQDSKTYIHRVGRTARAGKSGI 396
Query: 389 ALSFVS 394
A+S V+
Sbjct: 397 AISLVT 402
>gi|220929887|ref|YP_002506796.1| DEAD/DEAH box helicase [Clostridium cellulolyticum H10]
gi|220000215|gb|ACL76816.1| DEAD/DEAH box helicase domain protein [Clostridium cellulolyticum
H10]
Length = 565
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 119/402 (29%), Positives = 214/402 (53%), Gaps = 36/402 (8%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ 90
+AI +G+ E T IQ ++IP IL+ D++ +A+TG+GKT AF IP ++KI Q+
Sbjct: 17 RAIVDMGFEEATPIQSQSIPYILEGNDLIGQAQTGTGKTCAFGIPAVEKI-----DPQID 71
Query: 91 ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVAT 150
+ LVLSP++EL Q + ++ + +K ++ + + + Q L +RP I++ T
Sbjct: 72 SIQVLVLSPTRELAIQSCEELRNV-LKYKDGIRILPVYGGQPIDRQIMALKKRPQIIIGT 130
Query: 151 PARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLS 210
P R + H++ +T+ L+ SL+++++DEAD + + G+ +D+ +L+ +P+ Q IL SAT+
Sbjct: 131 PGRVMDHMRRRTIKLE-SLKMIVLDEADEMLNMGFREDIDTILEKVPEDRQTILFSATMP 189
Query: 211 EDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTI 270
+++L L +NPV +K+ + V + Y++ +E K +L L+ N ++ ++
Sbjct: 190 KEILELTKKYQKNPVHIKIAHKELT-VPSIEQYYLEVKESAKLEVLSRLIDTNDIK-LSL 247
Query: 271 IFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALET 330
+F NT + +L L+ S L+ ++ + R + F +G +D++IA+D A
Sbjct: 248 VFCNTKKRVDELTASLQSRGFSAEALHGDMRQEHRDKVMNLFRKGNFDILIATDVAA--- 304
Query: 331 PQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTAL 390
RGID V V N+D P D + Y+HR GRT R G A
Sbjct: 305 --------------------RGIDVDDVEAVFNYDLPNDDEYYVHRIGRTGRAGRTGKAF 344
Query: 391 SFVSLREQDLMND---GTALSFVSLREQDLMNDVNEYLMTNL 429
+F+ RE + D T + + ++ L N+V E M+N+
Sbjct: 345 TFIYGREMYKLRDIQRYTKSTIIPMKPPSL-NEVEEKKMSNI 385
>gi|189425674|ref|YP_001952851.1| DEAD/DEAH box helicase [Geobacter lovleyi SZ]
gi|189421933|gb|ACD96331.1| DEAD/DEAH box helicase domain protein [Geobacter lovleyi SZ]
Length = 439
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 118/377 (31%), Positives = 197/377 (52%), Gaps = 34/377 (9%)
Query: 19 LPFT-FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMI 77
+PF F+ + I LG+ PT IQ +AIP I+ D++ A+TG+GKT AFA+P++
Sbjct: 1 MPFQQFSFHPKVVAGINALGYTTPTPIQAQAIPKIMAGHDLMGLAQTGTGKTAAFALPIL 60
Query: 78 QKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQE 137
+++ + ++ +ALV++P++EL Q++ + EL + +K + + V+V+ Q
Sbjct: 61 HRLMQGPR----KQVRALVIAPTRELAEQINDAMLELGQQTR--LKSITVYGGVNVNPQI 114
Query: 138 PLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLP 197
L +IVVA P R L H+ T+DL ++LE++++DEAD +F G+ D++ +LK LP
Sbjct: 115 EKLKNGVEIVVACPGRLLDHINQGTIDL-TNLELLVLDEADQMFDMGFLPDIRRILKHLP 173
Query: 198 KLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILY 257
Q +L SAT+ ++ L ILR+P ++++ +AP + ++H + K +L
Sbjct: 174 AQRQTMLFSATMPAEIRGLAREILRDPATVQVDN--VAPAATVSHALYPVAQHLKTPLLM 231
Query: 258 TLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLY 317
LLK + +IF T + ++ LE+ + L L R A+ F G Y
Sbjct: 232 QLLK-HTDTDSVLIFTRTKHRAKRVGEQLEKAGYTAASLQGNLSQNRRQAAMDGFRNGTY 290
Query: 318 DVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRA 377
+++A+D A RGID VS+VIN+D P + YIHR
Sbjct: 291 QILVATDIAA-----------------------RGIDVSQVSHVINYDIPDTSEAYIHRI 327
Query: 378 GRTARGKNQGTALSFVS 394
GRT R G A + V+
Sbjct: 328 GRTGRAARNGDAFTMVT 344
>gi|443922203|gb|ELU41680.1| ATP-dependent RNA helicase drs1 [Rhizoctonia solani AG-1 IA]
Length = 1126
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 123/407 (30%), Positives = 203/407 (49%), Gaps = 42/407 (10%)
Query: 3 AKLGWLEPTLIQVYFELPFTFTLFCIPL-QAIAKLGWLEPTLIQERAIPLILQNKDVLVR 61
AK + P+ FT PL +A+ G+ PT IQ IP+ L KDV+
Sbjct: 170 AKAAYFAPSPTDAQVHTSFTSMNLSRPLLRALTSAGFNSPTPIQAATIPVALLGKDVVGG 229
Query: 62 ARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRD 121
A TGSGKT AF IP++++++ + A T+ LVL P++EL Q H ++L D
Sbjct: 230 AVTGSGKTAAFIIPILERLLYRSRDAH---TRVLVLVPTRELAVQCHAVAEKLGTFT--D 284
Query: 122 VKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVF 181
V+C I + + QE L RPD+VVATP R + HL+ +L+++++DEAD +
Sbjct: 285 VRCALIVGGLSLKAQEATLRTRPDLVVATPGRLIDHLRNSRSFALDALDVLVLDEADRML 344
Query: 182 SFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLA 241
S G+ D++K +++ P Q +L SAT+++DV +L L LR+PV L ++ P Q A
Sbjct: 345 SDGFADELKEIVQSCPTGRQTMLFSATMTDDVETLIRLSLRHPVRLFVD-----PSKQTA 399
Query: 242 HYHI-------LAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTC 294
+ +E E+ +L L + +G IIF + ++ ++ +
Sbjct: 400 RGLVQEFVRVRAGKEAERPALLVALCQRTARKG-VIIFFRSKKLAHQFRVVFGLCGLKAL 458
Query: 295 VLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGID 354
L+ L + R +A+ +F G D ++A+D SRG+D
Sbjct: 459 ELHGNLTQEQRLNALTKFRSGEADYLLATDL-----------------------ASRGLD 495
Query: 355 FQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLM 401
+ + VIN+D P I+ Y+HR GRTAR +G +++ V ++ ++
Sbjct: 496 IRGIETVINYDMPGQIEQYVHRVGRTARAGKKGRSITLVGEADRKML 542
>gi|237747736|ref|ZP_04578216.1| ATP-dependent RNA helicase [Oxalobacter formigenes OXCC13]
gi|229379098|gb|EEO29189.1| ATP-dependent RNA helicase [Oxalobacter formigenes OXCC13]
Length = 469
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 135/473 (28%), Positives = 235/473 (49%), Gaps = 45/473 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII---NLKQT 86
L+A+ LG++ PT IQ +AIPL+L+ KDV+ A+TG+GKT +++PM+Q ++ N +
Sbjct: 27 LKALDDLGYVSPTPIQVQAIPLVLEGKDVMGAAQTGTGKTAGYSLPMLQSLLFSANTSMS 86
Query: 87 AQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDI 146
+AL+L P++EL +Q+ ++++ VK + VD+S Q +L +I
Sbjct: 87 PARHPVRALILVPTRELADQVFEDVKRYAKYTP--VKSAVVFGGVDISSQTSILRAGVEI 144
Query: 147 VVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
++ATP R L H++ K ++L S +I+++DEAD + G+ D++ ++ LPK Q +L S
Sbjct: 145 LIATPGRLLDHVQQKNVNL-SHTQILVLDEADRMLDMGFLPDLQRIVNLLPKQRQNLLFS 203
Query: 207 ATLSEDVLSLKHLILRNPVILKL-EEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLV 265
AT S D+ L +++PV +++ + A A + Y I +E EK + LLK +
Sbjct: 204 ATFSNDIKKLARSFMKDPVTVEVARQNATAENVKQTVYRI--EESEKNAAVEHLLK-DRN 260
Query: 266 QGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE 325
Q + +IF NT +L LE+ + ++ + R + F G D+++A+D
Sbjct: 261 QEQVLIFSNTKAGASRLARQLERKGMKASAIHGDKTQAERMATLEAFKSGSIDILVATDV 320
Query: 326 KALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKN 385
A RG+ + + VINFD P + Y+HR GRT R +
Sbjct: 321 AA-----------------------RGLHIEELPCVINFDLPFVAEDYVHRIGRTGRAGS 357
Query: 386 QGTALSFVSLREQDLMNDGTALSFVSLREQDLMN-----DVNEYLMTNLHEDDFIIKPYQ 440
+G A+S S +++ L+ + L+ L + L + V+ + F PY+
Sbjct: 358 KGEAISLYSEKDERLLKEIEKLTKRQLPLEKLTDFEREKHVSPETGGTAYGKRFDRSPYK 417
Query: 441 FNLDEVKGFEYRAKDAWRSNYFEDNPTDLETLRHDKALYTVR--IQSHLADVP 491
G E ++KD W + + T + AL TV+ I + L +P
Sbjct: 418 -----SVGLEKKSKDPWFDQPYVPSATKSDKESEKPALKTVKKPIAALLGGLP 465
>gi|433544706|ref|ZP_20501082.1| ATP-dependent RNA helicase [Brevibacillus agri BAB-2500]
gi|432183978|gb|ELK41503.1| ATP-dependent RNA helicase [Brevibacillus agri BAB-2500]
Length = 530
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 119/390 (30%), Positives = 203/390 (52%), Gaps = 37/390 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
+Q I L + EPT IQE AIPLIL+ KDV+ +A+TG+GKT AF +P++ ++ A
Sbjct: 15 MQGIQDLYYKEPTPIQEEAIPLILEGKDVIGQAQTGTGKTAAFMLPILNRL-----DAGK 69
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
++ +AL+L+P++EL Q+ K +++L DV + + D+ Q L IVV
Sbjct: 70 RDIQALILTPTRELSIQIAKEVEKLGKHL--DVNVLSLHGGTDIDRQLSKLKSTVHIVVG 127
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H+K +L + +++DEAD + G+ +D++ V+ P Q +L SAT+
Sbjct: 128 TPGRVLDHMKRGSLHF-GRISTLVLDEADKMMEMGFLEDVEQVIVHTPSQRQVLLFSATM 186
Query: 210 SEDVLSLKHLILRNPVILKLE--EPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
+ V L H ++ P +K+E + + + Q Y+++ Q D+ ++ L +
Sbjct: 187 PDLVKRLAHRFMKQPPHIKIEGKQKTVEKIEQF--YYVVNQSDKTDALVDVLEQEQPFL- 243
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
TI+F NT + +L L++ ++ L +L R + QF + + ++A+D A
Sbjct: 244 -TIVFANTQVRVQQLTARLQENGLTAQALYGDLSQSKREQLMRQFREMRFQYLVATDIAA 302
Query: 328 LETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQG 387
RG+D + V++VIN+D P D++ YIHR GRT R G
Sbjct: 303 -----------------------RGLDVEGVTHVINYDLPNDVESYIHRVGRTGRAGQSG 339
Query: 388 TALSFVSLREQDLMNDGTALSFVSLREQDL 417
A+S +S R+++LM + S+ E+ L
Sbjct: 340 KAISLISPRQKNLMGRFAKATKASIEERIL 369
>gi|217970063|ref|YP_002355297.1| DEAD/DEAH box helicase [Thauera sp. MZ1T]
gi|217507390|gb|ACK54401.1| DEAD/DEAH box helicase domain protein [Thauera sp. MZ1T]
Length = 545
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 119/385 (30%), Positives = 207/385 (53%), Gaps = 35/385 (9%)
Query: 25 LFCIP--LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKI-- 80
L IP LQA+ G+ EPT IQ +AIP+++ KDV+ A+TG+GKT F +P++ +I
Sbjct: 6 LGLIPELLQAVTDAGYTEPTPIQRQAIPIVIAGKDVMGGAQTGTGKTAGFTLPLLHRIAR 65
Query: 81 -INLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL 139
N + +T+AL+L+P++EL Q+ ++++ + ++ V + VD+ Q+
Sbjct: 66 HANTSTSPARHQTRALILAPTRELAMQVFESVKTYSKHLP--LRSVCVYGGVDIRPQQAE 123
Query: 140 LVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199
L +IV+ATP R L HL+ K+++L S +E++++DEAD + G+ D+K +L LPK
Sbjct: 124 LRRGIEIVIATPGRLLDHLEQKSINL-SQVEVLVLDEADRMLDMGFIPDIKRILALLPKQ 182
Query: 200 YQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQ-LAHYHILAQEDEKATILYT 258
Q++L SAT S+++ L +L+ P ++++ + VS+ + H K +L
Sbjct: 183 RQSLLFSATFSDEIKRLADQMLKEPQLIEVARRNM--VSETITHVVHPVSSGMKRNLLAH 240
Query: 259 LLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYD 318
LL+ + + ++FV+T C +L YLE+ IS ++ + + R + F G
Sbjct: 241 LLR-HKPDTQALVFVDTKLMCGRLAHYLERSGISADAIHGDKGQQQRTDTLEAFKSGKLR 299
Query: 319 VIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAG 378
V++A+D A RG+D + VINF+ P + Y+HR G
Sbjct: 300 VLVATDVAA-----------------------RGLDIDELPFVINFELPHTAEDYVHRIG 336
Query: 379 RTARGKNQGTALSFVSLREQDLMND 403
RT R + G A+S VS E+ +++
Sbjct: 337 RTGRAGHHGYAISLVSSEEKHWLSE 361
>gi|334130724|ref|ZP_08504514.1| ATP-dependent RNA helicase [Methyloversatilis universalis FAM5]
gi|333444124|gb|EGK72080.1| ATP-dependent RNA helicase [Methyloversatilis universalis FAM5]
Length = 480
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 112/384 (29%), Positives = 201/384 (52%), Gaps = 31/384 (8%)
Query: 25 LFCIP--LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII- 81
L IP L+A+A G+ PT IQ +AIP++L +DV+ A+TG+GKT +F +P++Q++
Sbjct: 6 LGLIPELLRAVADTGYTSPTPIQAQAIPVVLAGRDVMGGAQTGTGKTASFTLPLLQRLAP 65
Query: 82 --NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL 139
N + +AL++ P++EL Q+H++++ + C I VD+ Q
Sbjct: 66 HANSSPSPAKHPVRALIVCPTRELAMQVHESVKTYSKHLPLRSSC--IYGGVDMKAQVAE 123
Query: 140 LVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199
L E +IVVATP R L H++ KT++L ++++++DEAD + G+ D+K +L LP
Sbjct: 124 LREGREIVVATPGRLLDHVEGKTVNL-GQVQMLVLDEADRMLDMGFIPDIKRILALLPTQ 182
Query: 200 YQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTL 259
Q++L SAT SE++ L +LR+P ++++ + H +D++A + + L
Sbjct: 183 RQSLLFSATFSEEIKKLAQAMLRDPQLIEVARRNATAETITHRVHACDTDDKRALLTHLL 242
Query: 260 LKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDV 319
+ + + ++FVNT +L +L + ++ ++ + + R A+ F G V
Sbjct: 243 TQDSYADRQALVFVNTKFGASRLAHHLVRQGVAADAIHGDKSQQQRTEALEAFKNGSVRV 302
Query: 320 IIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGR 379
++A+D A RG+D + + VINF+ P + + Y+HR GR
Sbjct: 303 LVATDVAA-----------------------RGLDIEDLPFVINFELPHNAEDYVHRIGR 339
Query: 380 TARGKNQGTALSFVSLREQDLMND 403
T R G A+S + E+ + D
Sbjct: 340 TGRAGRSGEAISLAAPEEKGRVAD 363
>gi|124265824|ref|YP_001019828.1| ATP-dependent RNA helicase 2 [Methylibium petroleiphilum PM1]
gi|124258599|gb|ABM93593.1| putative ATP-dependent RNA helicase 2 [Methylibium petroleiphilum
PM1]
Length = 494
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 115/378 (30%), Positives = 204/378 (53%), Gaps = 33/378 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+A+ G+L T IQ +AIPL+L +DV+ A+TG+GKT AF++P++QK++ + ++
Sbjct: 31 LRAVAESGYLLMTPIQAKAIPLVLAGRDVMGAAQTGTGKTAAFSLPLLQKMLKHESSSTS 90
Query: 90 ---QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDI 146
+ALVL+P++EL +Q+ N++ T ++ + +D+ Q L ++
Sbjct: 91 PARHPVRALVLAPTRELADQVANNVK--TYSKHTQLRATVVFGGIDMKPQTAELKRGVEV 148
Query: 147 VVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
++ATP R L H++AK L S +E V++DEAD + G+ D++ +L +LPK Q +L S
Sbjct: 149 LIATPGRLLDHIEAKNCSL-SQVEYVVLDEADRMLDIGFLPDLQRILSYLPKSRQTLLFS 207
Query: 207 ATLSEDVLSLKHLILRNPVILKLEEP-AIAPVSQLAHYHILAQEDEKATILYTLLKLNLV 265
AT S ++ L + L++P++++ P A A + Y + ++D+K + LL+ +
Sbjct: 208 ATFSPEIKKLANSYLQDPILVETARPNATASTVEQRFYRV--EDDDKRNAVKQLLRTRAI 265
Query: 266 QGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE 325
++I+FVN+ +L E+ + T L+ + R A+ F G D+++A+D
Sbjct: 266 T-QSIVFVNSKLGAARLARAFERDGLRTQALHGDKSQDERLKALAAFKAGEVDLLVATDV 324
Query: 326 KALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKN 385
A RG+D + V NFD P + + Y+HR GRT R
Sbjct: 325 AA-----------------------RGLDIADLPAVFNFDVPFNAEDYVHRIGRTGRAGA 361
Query: 386 QGTALSFVSLREQDLMND 403
G A++ VS + L++D
Sbjct: 362 SGLAITLVSRDDARLVSD 379
>gi|399046383|ref|ZP_10738806.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. CF112]
gi|398055540|gb|EJL47607.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. CF112]
Length = 492
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 119/390 (30%), Positives = 203/390 (52%), Gaps = 37/390 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
+Q I L + EPT IQE AIPLIL+ KDV+ +A+TG+GKT AF +P++ ++ A
Sbjct: 15 MQGIQDLYYKEPTPIQEEAIPLILEGKDVIGQAQTGTGKTAAFMLPILNRL-----DAGK 69
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
++ +AL+L+P++EL Q+ K +++L DV + + D+ Q L IVV
Sbjct: 70 RDIQALILTPTRELSIQIAKEVEKLGKHL--DVNVLSLHGGTDIDRQLSKLKSTVHIVVG 127
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H+K +L + +++DEAD + G+ +D++ V+ P Q +L SAT+
Sbjct: 128 TPGRVLDHMKRGSLHF-GRISTLVLDEADKMMEMGFLEDVEQVIVHTPSQRQVLLFSATM 186
Query: 210 SEDVLSLKHLILRNPVILKLE--EPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
+ V L H ++ P +K+E + + + Q Y+++ Q D+ ++ L +
Sbjct: 187 PDLVKRLAHRFMKQPPHIKIEGKQKTVEKIEQF--YYVVNQSDKTDALVDVLEQEQPFL- 243
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
TI+F NT + +L L++ ++ L +L R + QF + + ++A+D A
Sbjct: 244 -TIVFANTQVRVQQLTARLQENGLTAQALYGDLSQSKREQLMRQFREMRFQYLVATDIAA 302
Query: 328 LETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQG 387
RG+D + V++VIN+D P D++ YIHR GRT R G
Sbjct: 303 -----------------------RGLDVEGVTHVINYDLPNDVESYIHRVGRTGRAGQSG 339
Query: 388 TALSFVSLREQDLMNDGTALSFVSLREQDL 417
A+S +S R+++LM + S+ E+ L
Sbjct: 340 KAISLISPRQKNLMGRFAKATKASIEERIL 369
>gi|157737720|ref|YP_001490403.1| ATP-dependent RNA helicase RhlE [Arcobacter butzleri RM4018]
gi|157699574|gb|ABV67734.1| ATP-dependent RNA helicase RhlE [Arcobacter butzleri RM4018]
Length = 435
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 119/374 (31%), Positives = 201/374 (53%), Gaps = 32/374 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AI + G+ PT IQ ++IP+IL KDVL A+TG+GKT F +P++Q++ + +
Sbjct: 13 LRAIKEEGYTTPTPIQSKSIPVILSKKDVLAAAQTGTGKTAGFTLPLLQRLKDSNFKDKK 72
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ +AL+L+P++EL Q+ ++++ T K I V ++ Q+ LL + DI++A
Sbjct: 73 TQVRALILTPTRELAAQVAQSVE--TYGKYLPFKSAVIFGGVGINPQKALLKKGVDIIIA 130
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L + +LDL S +E +++DEAD + G+ +D+K +L LPK Q +L SAT
Sbjct: 131 TPGRLLDLISQDSLDL-SKIEFLVLDEADRMLDMGFINDIKKILAILPKQRQNLLFSATF 189
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAP--VSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
S ++ L +L++PV++++ + A V Q+ H+ +D K +L L+ N Q
Sbjct: 190 SNEIKKLADGLLKSPVLVEVSKANSASFKVEQVVHH---VDKDRKKELLLHLVNKNSWQ- 245
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
+ ++F T KL L + KI++ ++ AR A+ F G V++A+D A
Sbjct: 246 QVLVFTRTKHGANKLSEALVKDKITSAAIHGNKSQGARTKALDDFKNGKVRVLVATDIAA 305
Query: 328 LETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQG 387
RGID + + +V+NF+ P + Y+HR GRT R N G
Sbjct: 306 -----------------------RGIDIEQLPHVVNFELPNVAEDYVHRIGRTGRAGNNG 342
Query: 388 TALSFVSLREQDLM 401
A+S V + E + +
Sbjct: 343 IAISLVCVDEHEYL 356
>gi|432871164|ref|XP_004071864.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
[Oryzias latipes]
Length = 488
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 117/365 (32%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ 90
+A +LGW PT IQ AIP+ LQ KDV+ A TGSGKTGAFA+P++Q ++ A Q
Sbjct: 52 EACDQLGWKSPTKIQVEAIPVALQGKDVIGLAETGSGKTGAFALPILQSLL-----ASPQ 106
Query: 91 ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVAT 150
LVL+P++EL Q+ + + L S VKC I +D+ Q +L ++P IV+AT
Sbjct: 107 RLHTLVLTPTRELAFQISEQFEALG--SSIGVKCAVIVGGIDMMSQSLVLAKKPHIVIAT 164
Query: 151 PARALAHLK-AKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
P R + H++ K L+ +L+ +++DEAD + + +E ++ +LK +P+ + L SAT+
Sbjct: 165 PGRLIDHMENTKGFSLR-ALKFLVMDEADRILNMDFETEVDKILKVIPRERRTFLFSATM 223
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
++ V L+ L++PV + + V +L Y++ K L ++L L
Sbjct: 224 TKKVQKLQRAALKDPVKCAV-STKYSTVDKLQQYYVFIPAKYKDCYLVSILN-ELAGNSF 281
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
+IF +T + ++ L L I+ L+ ++ R A+ +F V++A+D
Sbjct: 282 MIFCSTCNNAQRVALMLRNLGITAIPLHGQMSQNKRLGALNKFKSKSRSVLLATDV---- 337
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D V VIN+D P + YIHR GRTAR G +
Sbjct: 338 -------------------ASRGLDIPHVDCVINYDIPTHSKDYIHRVGRTARAGRSGKS 378
Query: 390 LSFVS 394
++FV+
Sbjct: 379 ITFVT 383
>gi|15896005|ref|NP_349354.1| DEAD/DEAH box helicase [Clostridium acetobutylicum ATCC 824]
gi|337737958|ref|YP_004637405.1| DEAD-box ATP dependent DNA helicase [Clostridium acetobutylicum DSM
1731]
gi|384459469|ref|YP_005671889.1| ATP dependent RNA helicase DeaD, superfamily II [Clostridium
acetobutylicum EA 2018]
gi|15025785|gb|AAK80694.1|AE007772_6 ATP dependent RNA helicase DeaD, superfamily II [Clostridium
acetobutylicum ATCC 824]
gi|325510158|gb|ADZ21794.1| ATP dependent RNA helicase DeaD, superfamily II [Clostridium
acetobutylicum EA 2018]
gi|336292304|gb|AEI33438.1| DEAD-box ATP dependent DNA helicase [Clostridium acetobutylicum DSM
1731]
Length = 481
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 119/379 (31%), Positives = 210/379 (55%), Gaps = 43/379 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L++I KLG+ +P+ IQE+ IP+IL KD++ +A+TGSGKT AFAIP+ +KI +
Sbjct: 16 LKSIEKLGYKKPSSIQEKVIPVILNGKDIIAKAKTGSGKTAAFAIPVCEKI-----ELEE 70
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+E + LVL+P++EL Q+ ++ L + + ++C+ I + +S Q L +R IVV
Sbjct: 71 REPQVLVLAPTRELAYQIKEDF--LNIGRFKRLRCISIFGKEPISNQIRELKQRVHIVVG 128
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H++ TL+L+ ++ IIDEAD + + G+ + ++++L +PK L SATL
Sbjct: 129 TPGRVLDHIERGTLNLE-KVKYFIIDEADEMLNMGFIEQVESILIKMPKNKNTFLFSATL 187
Query: 210 SEDVLSLKHLILRN--PVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNL--- 264
E+++ L ++N + ++ E + Q+ +Y + ++E + LLK +
Sbjct: 188 PEEIVMLSKKYMKNFENIEVQNEGKTKGGIHQV-YYEVESREK------FDLLKKVIYKE 240
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
V G +IIF T + + + ++ K S ++ + + R + F +G + +IA+D
Sbjct: 241 VPGSSIIFCRTKNNVEDVLVKMKNMKFSCMAIHGGMLQENRIAVMNAFKRGEFTFLIATD 300
Query: 325 EKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384
A RGID + V++VIN+D P++ + YIHR GRT R
Sbjct: 301 VAA-----------------------RGIDVENVTHVINYDIPMEKESYIHRIGRTGRMG 337
Query: 385 NQGTALSFVSLREQDLMND 403
N+G A++FV+ +E+ + +
Sbjct: 338 NKGIAITFVTSKEERFLKE 356
>gi|126175951|ref|YP_001052100.1| DEAD/DEAH box helicase [Shewanella baltica OS155]
gi|152999102|ref|YP_001364783.1| DEAD/DEAH box helicase [Shewanella baltica OS185]
gi|217971789|ref|YP_002356540.1| DEAD/DEAH box helicase [Shewanella baltica OS223]
gi|386342704|ref|YP_006039070.1| DEAD/DEAH box helicase [Shewanella baltica OS117]
gi|125999156|gb|ABN63231.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
gi|151363720|gb|ABS06720.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
gi|217496924|gb|ACK45117.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
gi|334865105|gb|AEH15576.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS117]
Length = 640
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 116/372 (31%), Positives = 197/372 (52%), Gaps = 33/372 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+ +LG+ +PT IQ +I ++ KD+L +A+TG+GKTGAFA+P++ K+ + + T Q+
Sbjct: 18 LRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNKVTS-QTTPQI 76
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
LVL+P++EL Q+ + K ++ + I + Q L P ++V
Sbjct: 77 -----LVLAPTRELAVQVAEAFSSYA-KFMKNFHVLPIYGGQSMQQQLNALKRGPQVIVG 130
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + H++ TL L SL+ +++DEAD + G+ DD++ +L+ P Q L SAT+
Sbjct: 131 TPGRVMDHMRRGTLKL-DSLQALVLDEADEMLKMGFIDDIEWILEHTPSERQLALFSATM 189
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + + + LRNPV +++E V + + + K L +L++ +G
Sbjct: 190 PEQIKRVANQHLRNPVHVRIESSQTT-VESIEQRFVQVSQHNKLEALVRVLEVENTEG-V 247
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
IIFV T + C +L LE ++ L+ ++ +AR AV Q +G D++IA+D A
Sbjct: 248 IIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILIATDVAA-- 305
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
RG+D + + +V+N+D P D + Y+HR GRT R G A
Sbjct: 306 ---------------------RGLDVERIGHVVNYDIPYDAEAYVHRIGRTGRAGRTGMA 344
Query: 390 LSFVSLREQDLM 401
+ FV+ RE ++
Sbjct: 345 ILFVTSREMRML 356
>gi|212638043|ref|YP_002314563.1| ATP-dependent RNA helicase [Anoxybacillus flavithermus WK1]
gi|212559523|gb|ACJ32578.1| ATP-dependent RNA helicase [Anoxybacillus flavithermus WK1]
Length = 471
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 116/373 (31%), Positives = 204/373 (54%), Gaps = 43/373 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++A++K+G+ E T IQ IPL LQN+DV+ +A+TG+GKT AF IP+I+K I++ A
Sbjct: 17 MKAVSKMGFEEATPIQAATIPLSLQNRDVIGQAQTGTGKTAAFGIPLIEK-IDMNNDA-- 73
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+A+V++P++EL Q+ + + ++ ++ V+ + I D+ Q L + P I+V
Sbjct: 74 --VQAIVVAPTRELAIQVSEELYKIG--STKRVRVLPIYGGQDIERQIRALKKHPHIIVG 129
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H++ +TL L+ + V++DEAD + + G+ +D++A+L +P Q +L SAT+
Sbjct: 130 TPGRILDHIQRRTLRLQ-HVHTVVLDEADEMLNMGFVEDIEAILSHVPTERQTLLFSATM 188
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLL-----KLNL 264
E + + + NP +++++ + V + Y+I QE +K L LL +L +
Sbjct: 189 PEPIRRIAERFMNNPELVRVKAKEMT-VPNIEQYYIEIQEKKKFDTLTRLLDIQSPELAI 247
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
V G+T V+ + + L+ Y + ++ +L R + +F +G D+++A+D
Sbjct: 248 VFGRTKRRVDELAEALNLRGYAAEG------IHGDLSQAKRLSVLRKFKEGSIDILVATD 301
Query: 325 EKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384
A RG+D V++V NFD P D + Y+HR GRT R
Sbjct: 302 VAA-----------------------RGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAG 338
Query: 385 NQGTALSFVSLRE 397
G A++FV+ RE
Sbjct: 339 KTGMAITFVTPRE 351
>gi|160873699|ref|YP_001553015.1| DEAD/DEAH box helicase [Shewanella baltica OS195]
gi|373951054|ref|ZP_09611015.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
gi|378706943|ref|YP_005271837.1| DEAD/DEAH box helicase [Shewanella baltica OS678]
gi|386323127|ref|YP_006019244.1| DEAD/DEAH box helicase [Shewanella baltica BA175]
gi|418025621|ref|ZP_12664598.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS625]
gi|160859221|gb|ABX47755.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
gi|315265932|gb|ADT92785.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
gi|333817272|gb|AEG09938.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
gi|353534882|gb|EHC04447.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS625]
gi|373887654|gb|EHQ16546.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
Length = 640
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 116/372 (31%), Positives = 197/372 (52%), Gaps = 33/372 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+ +LG+ +PT IQ +I ++ KD+L +A+TG+GKTGAFA+P++ K+ + + T Q+
Sbjct: 18 LRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNKVTS-QTTPQI 76
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
LVL+P++EL Q+ + K ++ + I + Q L P ++V
Sbjct: 77 -----LVLAPTRELAVQVAEAFSSYA-KFMKNFHVLPIYGGQSMQQQLNALKRGPQVIVG 130
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + H++ TL L SL+ +++DEAD + G+ DD++ +L+ P Q L SAT+
Sbjct: 131 TPGRVMDHMRRGTLKL-DSLQALVLDEADEMLKMGFIDDIEWILEHTPSERQLALFSATM 189
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + + + LRNPV +++E V + + + K L +L++ +G
Sbjct: 190 PEQIKRVANQHLRNPVHVRIESSQTT-VESIEQRFVQVSQHNKLEALVRVLEVENTEG-V 247
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
IIFV T + C +L LE ++ L+ ++ +AR AV Q +G D++IA+D A
Sbjct: 248 IIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILIATDVAA-- 305
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
RG+D + + +V+N+D P D + Y+HR GRT R G A
Sbjct: 306 ---------------------RGLDVERIGHVVNYDIPYDAEAYVHRIGRTGRAGRTGMA 344
Query: 390 LSFVSLREQDLM 401
+ FV+ RE ++
Sbjct: 345 ILFVTSREMRML 356
>gi|374628683|ref|ZP_09701068.1| DEAD/DEAH box helicase domain protein [Methanoplanus limicola DSM
2279]
gi|373906796|gb|EHQ34900.1| DEAD/DEAH box helicase domain protein [Methanoplanus limicola DSM
2279]
Length = 529
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 114/368 (30%), Positives = 187/368 (50%), Gaps = 32/368 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AI +G+ EPT IQ +IPLI+ KD+ +A+TG+GKT AFAIP+++KI K Q
Sbjct: 17 LKAIEDMGFEEPTPIQNISIPLIMSGKDITAQAQTGTGKTAAFAIPLLEKINTDKLAVQ- 75
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
A+VL+P++EL Q+ + L +K D++ + I + Q + +++
Sbjct: 76 ----AIVLAPTRELTIQIAEEFNRL-IKYMADIRILPIYGGQPIERQISAMRRGVQVIIG 130
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + HL KTL + S + V++DEAD + G+ +D++ +L + PK Q +L SAT+
Sbjct: 131 TPGRVIDHLGRKTLSM-SEVNFVVLDEADQMLDMGFREDLEEILGYAPKERQTVLFSATM 189
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+L + NP + + P V + ++I +E EKA +L + + G++
Sbjct: 190 PAPILRISKSFQHNPEFVSI-TPKTLTVPSIEQFYIEVRESEKADLLCRFIDIK-GPGQS 247
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F NT + +L + L+ +L + R + +F G D++IA+D A
Sbjct: 248 IVFCNTKKRVDELSSIMRSRGYFAEGLHGDLKQQQRDRVMGKFRNGTIDILIATDVAA-- 305
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
RGID + + V N+D P D + Y+HR GRT R G +
Sbjct: 306 ---------------------RGIDVEDIETVYNYDVPQDTEYYVHRIGRTGRAGKSGAS 344
Query: 390 LSFVSLRE 397
+FV RE
Sbjct: 345 YTFVGPRE 352
>gi|373455480|ref|ZP_09547312.1| hypothetical protein HMPREF9453_01481 [Dialister succinatiphilus
YIT 11850]
gi|371934839|gb|EHO62616.1| hypothetical protein HMPREF9453_01481 [Dialister succinatiphilus
YIT 11850]
Length = 504
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 116/368 (31%), Positives = 195/368 (52%), Gaps = 33/368 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+ +G+ EP+ IQ+ AIP+ L KD++ +A+TG+GKT AF IP++++I K Q
Sbjct: 15 LKAVEDMGFEEPSPIQKAAIPIALTGKDLIGQAQTGTGKTAAFGIPILERIDTSKPGPQ- 73
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
A+VLSP++EL Q + I L + + I D+ Q L + P+I+VA
Sbjct: 74 ----AVVLSPTRELAIQSAEEINHLAQYLP--IHALPIYGGQDIERQFKALRKHPNIIVA 127
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + H+K T+DL S ++++++DE D + G+ DD++ +L +P+ Q + SAT+
Sbjct: 128 TPGRLMDHMKRGTIDL-SHVQVLVLDEGDEMVDMGFIDDIRTILAGIPEERQTMFFSATM 186
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L L++P ++K++ A + + +I + +K L LL + +
Sbjct: 187 PEPIRQLAETFLKDPELVKIKA-ATVTIDLIEQEYIELPDRQKFDALCRLLDMQDPE-LA 244
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+FV T +C ++ L++ L+ +L + R V QF +G D+++A+D A
Sbjct: 245 IVFVRTKRRCDEVTEALKKRGYMAEGLHGDLSQQKRDTVVRQFKEGTIDILVATDVAA-- 302
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
RG+D V++V NFD P D + Y+HR GRT R G A
Sbjct: 303 ---------------------RGLDISGVTHVYNFDMPQDPEIYVHRVGRTGRAGKTGLA 341
Query: 390 LSFVSLRE 397
++FV RE
Sbjct: 342 VTFVISRE 349
>gi|300853611|ref|YP_003778595.1| ATP-dependent RNA helicase [Clostridium ljungdahlii DSM 13528]
gi|300433726|gb|ADK13493.1| predicted ATP-dependent RNA helicase [Clostridium ljungdahlii DSM
13528]
Length = 496
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 119/370 (32%), Positives = 206/370 (55%), Gaps = 37/370 (10%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L++I KLG+ P+ +QE+ IPLI +NKD++V+++TGSGKT AFAIP+ +KI ++ QV
Sbjct: 31 LKSIEKLGYKNPSQVQEKVIPLIFKNKDIIVKSQTGSGKTAAFAIPICEKIELEEKNPQV 90
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
LVL+P++EL Q+ ++ ++ + + C I + ++ Q L +R ++V
Sbjct: 91 -----LVLAPTRELALQIKEDFYDIGR--FKRINCTAIFGKEPITTQIKELKQRTHVIVG 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H++ TL LK ++ +IIDEAD + + G+ D +KAVL LPK +L SAT+
Sbjct: 144 TPGRTLDHIEKDTLSLK-KIQYLIIDEADEMLNMGFIDQVKAVLDKLPKNRVTLLFSATI 202
Query: 210 SEDVLSLKHLILRNPVILKL--EEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
+++L L + NP+ +++ E+P I ++Q+ +Y I A +K +L L+ +
Sbjct: 203 PQEILKLCAAYMNNPINVEIDAEDPVINRINQI-YYQIEAY--KKFDLLNKLVYTQRPES 259
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
++IF T L L ++ S L+ + R + +F +G + ++ +D A
Sbjct: 260 -SMIFCRTKKNVEDLVLQMKGKGYSCSGLHGGMLQSERIDVMKRFKRGEFIFLVCTDVAA 318
Query: 328 LETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQG 387
RGID + ++++IN+D P++ + Y+HR GRT R G
Sbjct: 319 -----------------------RGIDVENITHIINYDIPMEKESYVHRIGRTGRAGKSG 355
Query: 388 TALSFVSLRE 397
TA++FV+ +E
Sbjct: 356 TAITFVTPKE 365
>gi|408907437|emb|CCM11467.1| Cold-shock DEAD-box protein A [Helicobacter heilmannii ASB1.4]
Length = 465
Score = 185 bits (470), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 113/365 (30%), Positives = 194/365 (53%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L++IA++G+ +P+ IQE+AIPL+L KDV+ +A+TG+GKT AFA+P+IQ + N K
Sbjct: 25 LKSIAEVGFTQPSPIQEKAIPLVLAGKDVIAQAQTGTGKTAAFALPIIQNLQNNK----- 79
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ALV++P++EL Q+ I +L CV + + + LL P +++A
Sbjct: 80 -SVEALVITPTRELAMQVSDEIFKLGKSSRTRTICVYGGQSIRKQCE--LLERNPQVMIA 136
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK K L + + ++V++DE+D + G+ DD++ + +LP+ Q +L SAT+
Sbjct: 137 TPGRLLDHLKNKRLK-RFAPKVVVLDESDEMLDMGFLDDIEEIFDYLPENAQILLFSATM 195
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+ L + IL+NPV + + + ++++ + + I+ L K K+
Sbjct: 196 PPPIKELANKILQNPVSVHIAPTHVTNADIAQRFYVINEHERNEAIMRLLDK--ETPSKS 253
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
IIF+ + +L +L T L+ ++ +AR ++ F DV+IA+D
Sbjct: 254 IIFMRMKREVDELHQFLSAKGYKTTPLHGDMEQRARQTSIKAFKSKQADVLIATDV---- 309
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ P++ + YIHR GRT R +G A
Sbjct: 310 -------------------ASRGLDISDVSHVFNYHLPINTESYIHRIGRTGRAGKKGVA 350
Query: 390 LSFVS 394
++ V+
Sbjct: 351 ITLVT 355
>gi|392427583|ref|YP_006468577.1| DNA/RNA helicase, superfamily II [Desulfosporosinus acidiphilus
SJ4]
gi|391357546|gb|AFM43245.1| DNA/RNA helicase, superfamily II [Desulfosporosinus acidiphilus
SJ4]
Length = 488
Score = 185 bits (470), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 109/372 (29%), Positives = 205/372 (55%), Gaps = 33/372 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
+++I +G+ E T IQE IP+ LQ +D++ +A+TG+GKT A+ IP+I++ +Q+ Q+
Sbjct: 14 IRSIVNMGFEETTPIQEMTIPIALQGRDLIGQAQTGTGKTAAYGIPLIERF--AEQSEQI 71
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
Q +VL+P++EL Q+ + + ++ + + + I ++ Q L +RP I+VA
Sbjct: 72 Q---GIVLAPTRELAVQVAEELNKIGQ--FKGIHSLPIYGGQNIDWQIRALRKRPHIIVA 126
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + H++ +T+ L + ++IV++DEAD + + G+ +D++ +LK +P++ Q +L SAT+
Sbjct: 127 TPGRLMDHMRRRTIRL-NEIKIVVLDEADEMLNMGFLEDIETILKEIPEIRQTLLFSATM 185
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+ + ++ ++ P ++++ + VS + ++I E K +L LL + + +
Sbjct: 186 PKQIQNIAQRFMKEPEFIQIKATGVT-VSDIEQHYIEVPEKLKFDVLTRLLDIQSPE-LS 243
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L L + S ++ +L R + QF G DV++A+D A
Sbjct: 244 IVFARTKRRVDELSEGLNKRGYSAEGIHGDLTQSKRDSVLRQFKDGTIDVLVATDVAA-- 301
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
RG+D V++V NFD P D + Y+HR GRT R G A
Sbjct: 302 ---------------------RGLDISGVTHVFNFDIPQDTESYVHRVGRTGRAGKTGLA 340
Query: 390 LSFVSLREQDLM 401
++FV+ RE ++
Sbjct: 341 ITFVTPREMGML 352
>gi|332525460|ref|ZP_08401618.1| putative ATP-dependent RNA helicase 2 [Rubrivivax benzoatilyticus
JA2]
gi|332108727|gb|EGJ09951.1| putative ATP-dependent RNA helicase 2 [Rubrivivax benzoatilyticus
JA2]
Length = 483
Score = 185 bits (470), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 115/377 (30%), Positives = 198/377 (52%), Gaps = 31/377 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII---NLKQT 86
L+A+A G+ T IQ +AIP++L +DV+ A+TG+GKT AF IP++QK++ N +
Sbjct: 29 LRAVADAGYRAMTPIQAKAIPIVLDGRDVMGAAQTGTGKTAAFTIPLLQKMLRHENTSMS 88
Query: 87 AQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDI 146
+ALVL+P++EL +Q+ N++ K +R ++ + VD+ Q L ++
Sbjct: 89 PARHPVRALVLAPTRELADQVAANVKTYA-KHTR-LRSAVVFGGVDMKPQTAELKAGVEV 146
Query: 147 VVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
++ATP R L H++A+ L + +E V++DEAD + G+ D++ +L FLPK Q +L S
Sbjct: 147 LIATPGRLLDHIEARNAVL-NQVEYVVLDEADRMLDIGFLPDLQRILSFLPKTRQTLLFS 205
Query: 207 ATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQ 266
AT S ++ L L++PV +++ P + ++ + +D++AT+ L + L Q
Sbjct: 206 ATFSPEIKRLAGSYLQDPVTVEVARPNATASTVEQRFYGVGDDDKRATVRQILRQRELSQ 265
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
I+FVN+ +L E+ + T L+ + R A+ F G D+++A+D
Sbjct: 266 --AIVFVNSKLGAARLARSFERDGLKTQALHGDKSQDERLKALAAFKAGEVDLLVATDVA 323
Query: 327 ALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQ 386
A RG+D + V NFD P + + Y+HR GRT R
Sbjct: 324 A-----------------------RGLDIADLPAVFNFDVPFNAEDYVHRIGRTGRAGAS 360
Query: 387 GTALSFVSLREQDLMND 403
G A++ V+ + L+ D
Sbjct: 361 GLAVTLVTRDDTRLIGD 377
>gi|392531372|ref|ZP_10278509.1| ATP-dependent RNA helicase; cold shock [Carnobacterium
maltaromaticum ATCC 35586]
gi|414082690|ref|YP_006991393.1| DEAD/DEAH box helicase [Carnobacterium maltaromaticum LMA28]
gi|412996269|emb|CCO10078.1| DEAD/DEAH box helicase family protein [Carnobacterium
maltaromaticum LMA28]
Length = 541
Score = 185 bits (470), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 118/370 (31%), Positives = 202/370 (54%), Gaps = 37/370 (10%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQ++ +LG+ E T IQE+ IPL L+ KDV+ +A+TG+GKT AF +PM+QK I+LK A
Sbjct: 13 LQSVERLGFEEATPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPMLQK-IDLKNRA-- 69
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRD--VKCVDISEQVDVSVQEPLLVERPDIV 147
+ LV++P++EL Q QE + SRD V+ + D+S Q L ++P IV
Sbjct: 70 --VQGLVIAPTRELAIQ----TQEELFRLSRDKKVRVQVVYGGADISRQIRSLKDQPHIV 123
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
V TP R L H+ +TL L +E +++DEAD + + G+ +D++ ++K +PK Q +L SA
Sbjct: 124 VGTPGRLLDHINRRTLKL-DQVETLVLDEADEMLNMGFLEDIEKIIKEVPKTRQTLLFSA 182
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
T+ + + + + P ++++ A++ S + Y++ ++ EK I+ LL + +
Sbjct: 183 TMPDAIKRIGVKFMNEPEHVRIQATAMSD-SLIDQYYVRCKDFEKFDIMTRLLDVQTPE- 240
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
TI+F T + +L LE ++ +L + R + F +G D+++A+D A
Sbjct: 241 LTIVFGRTKRRVDELSKGLEMRGYRAEGIHGDLSQQKRMSVLKSFKKGDLDILVATDVAA 300
Query: 328 LETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQG 387
RG+D V++V N+D P D + Y+HR GRT R +G
Sbjct: 301 -----------------------RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEG 337
Query: 388 TALSFVSLRE 397
+++F++ E
Sbjct: 338 MSVTFITPNE 347
>gi|389873083|ref|YP_006380502.1| ATP-dependent RNA helicase [Advenella kashmirensis WT001]
gi|388538332|gb|AFK63520.1| ATP-dependent RNA helicase [Advenella kashmirensis WT001]
Length = 476
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 117/384 (30%), Positives = 206/384 (53%), Gaps = 45/384 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII---NLKQT 86
L+A+ G+ +PT IQE+A+PLI+ +D++ A+TG+GKT AF +P++ +++ N +
Sbjct: 28 LKAVMASGYTKPTPIQEQAMPLIMDGRDIMGAAQTGTGKTAAFTLPLLHRLMPMANSSMS 87
Query: 87 AQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDI 146
+AL+L+P++EL +Q+ ++++ + S ++ + VD++ Q L + ++
Sbjct: 88 PARHPVRALILAPTRELADQVAESVKRYSH--SSPLRVAVVFGGVDMNAQRDQLRKGCEL 145
Query: 147 VVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
++ATP R L H++ K + L S + ++++DEAD + G+ D++ +++ LPK Q++L S
Sbjct: 146 LIATPGRLLDHIEQKNVSL-SQVSVLVLDEADRMLDMGFLPDLERIVRLLPKPRQSLLFS 204
Query: 207 ATLSEDVLSLKHLILRNPVILKLEEPAIAP-------VSQLAHYHILAQEDEKATILYTL 259
AT S D+ L L NPV E +AP V+Q+A+ +A ++KA +LYTL
Sbjct: 205 ATFSNDIRKLARSFLNNPV-----EINVAPRNATAETVTQIAYP--VAPNEKKAAVLYTL 257
Query: 260 LKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDV 319
NL Q I+FVNT ++ L I+ ++ + R A+ F G V
Sbjct: 258 KSRNLSQ--VIVFVNTKIGASRVARELVSEGINAESIHGDRSQAERIKALEGFKSGEIAV 315
Query: 320 IIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGR 379
++A+D A RG+D + VIN D P + + Y+HR GR
Sbjct: 316 LVATDVAA-----------------------RGLDVVGLPCVINMDLPYNAEDYVHRIGR 352
Query: 380 TARGKNQGTALSFVSLREQDLMND 403
T R +G A++F + E+ L+ D
Sbjct: 353 TGRAGAKGEAIAFYTQTEERLLED 376
>gi|398816782|ref|ZP_10575424.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. BC25]
gi|398031995|gb|EJL25360.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. BC25]
Length = 520
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 113/377 (29%), Positives = 202/377 (53%), Gaps = 33/377 (8%)
Query: 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIIN 82
F L ++A++ +G+ E T IQ++ +P+ LQ +D++ +A+TG+GKT AF IP+I+++
Sbjct: 7 FGLHHSIVRALSNMGFEEATAIQDQTVPVALQGRDLIGQAQTGTGKTAAFGIPLIERLDE 66
Query: 83 LKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVE 142
Q +VL+P++EL Q+ + I ++ +++ + I D++ Q L +
Sbjct: 67 TSGNIQ-----GVVLTPTRELAVQVAEEINKIAQ--FKNISALPIYGGQDITRQIKALKK 119
Query: 143 RPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQA 202
RP I+VATP R + H++ KT+ L ++E+VI+DEAD + + G+ DD+K +LK +P Q
Sbjct: 120 RPQIIVATPGRFMDHMRRKTIRL-DAIEVVILDEADEMLNMGFIDDIKEILKEVPDNRQT 178
Query: 203 ILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKL 262
+L SAT+ + + + P I++++ + V +A ++ E +K +L LL +
Sbjct: 179 LLFSATMPRAIQEIAQQFMNEPTIIQVKAKEVT-VPNIAQEYMEVAEKQKFDVLCRLLDI 237
Query: 263 NLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIA 322
+ + IIF T + +L L + ++ +L R + +F +G +V++A
Sbjct: 238 HSPE-LAIIFGRTKRRVDELSEALTKRGYGAEGIHGDLNQAKRDSVLRKFKEGTIEVLVA 296
Query: 323 SDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTAR 382
+D A RG+D V++V NFD P D + Y+HR GRT R
Sbjct: 297 TDVAA-----------------------RGLDISGVTHVFNFDIPQDAESYVHRIGRTGR 333
Query: 383 GKNQGTALSFVSLREQD 399
G A++FV+ RE D
Sbjct: 334 AGKTGLAITFVTSREID 350
>gi|346318712|gb|EGX88314.1| ATP-dependent rRNA helicase RRP3 [Cordyceps militaris CM01]
Length = 480
Score = 185 bits (469), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 117/366 (31%), Positives = 192/366 (52%), Gaps = 35/366 (9%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ 90
+A LG+ PT IQ ++IP+ LQ +DV+ A TGSGKT AFA+P++Q +++ + Q
Sbjct: 71 EACETLGYKTPTGIQAQSIPVALQGRDVIGLAETGSGKTAAFALPVLQALLD-----KPQ 125
Query: 91 ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVAT 150
LVL+P++EL Q+ + + L S ++C I +D+ Q L ++P ++VAT
Sbjct: 126 PLFGLVLAPTRELAAQIGQTFEALGALIS--LRCAVIVGGLDMVPQAVALGKKPHVIVAT 183
Query: 151 PARALAHL-KAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
P R + HL K K L+ +L+ +++DEAD + + + ++ +LKF+P+ + L SAT+
Sbjct: 184 PGRLVDHLEKTKGFSLR-TLKYLVLDEADRLLDMDFGESIEKLLKFIPRERRTYLFSATM 242
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
S V SL+ LR+PV + + VS L +++ K T L + +N GK+
Sbjct: 243 SSSVESLQRASLRDPVRVSVSASKYQTVSTLKQHYVFIPHKRKDTYLIHI--INEFAGKS 300
Query: 270 -IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL 328
I+F TV + + + L L+ +L AR A+ +F G ++++A+D A
Sbjct: 301 CIVFTRTVYETQRCAVLLRTLGFGAIPLHGQLSQSARLGALNKFRGGTREILVATDVAA- 359
Query: 329 ETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGT 388
RG+D V ++N+D P D + YIHR GRTAR G
Sbjct: 360 ----------------------RGLDIPKVDVILNYDIPSDSKTYIHRVGRTARAGKSGV 397
Query: 389 ALSFVS 394
A+S V+
Sbjct: 398 AISIVT 403
>gi|258645792|ref|ZP_05733261.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Dialister invisus
DSM 15470]
gi|260403163|gb|EEW96710.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Dialister invisus
DSM 15470]
Length = 510
Score = 185 bits (469), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 116/374 (31%), Positives = 199/374 (53%), Gaps = 33/374 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++AI +G+ EPT IQ+ +IP ++ KD++ +A+TG+GKT AF IP+++KI ++ Q
Sbjct: 15 MKAIEDMGFEEPTPIQKVSIPAAMEGKDLIGQAQTGTGKTAAFGIPILEKIDTTEKGPQ- 73
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
A+VLSP++EL Q + + L + + I D+ Q L ++P+I+VA
Sbjct: 74 ----AIVLSPTRELAIQSAEEMNRLAQYLP--IHALPIYGGQDIERQFRALRKKPNIIVA 127
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + H+K T+DL S ++I+++DE D + G+ DD++ +L +P+ Q + SAT+
Sbjct: 128 TPGRLMDHMKRGTIDL-SHVQILVLDEGDEMVDMGFIDDIRTILAGMPEERQTMFFSATM 186
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+ L LR+PV++K+ + A + + +I + +K L LL + +
Sbjct: 187 PAPIRELAESFLRDPVLVKI-KAATVTIDLVEQEYIELPDMQKFDCLCRLLDMENPE-LA 244
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+FV T + ++ L++ L+ +L + R V QF +G D+++A+D A
Sbjct: 245 IVFVRTKRRADEVTEALKKRGYMAEGLHGDLSQQKRDAVVRQFKEGTIDILVATDVAA-- 302
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
RG+D V++V NFD P D + Y+HR GRT R G A
Sbjct: 303 ---------------------RGLDISGVTHVYNFDMPQDSETYVHRVGRTGRAGQTGLA 341
Query: 390 LSFVSLREQDLMND 403
++FV RE ++D
Sbjct: 342 MTFVVSREIGQLHD 355
>gi|421861510|ref|ZP_16293512.1| DNA and RNA helicase [Paenibacillus popilliae ATCC 14706]
gi|410828936|dbj|GAC43949.1| DNA and RNA helicase [Paenibacillus popilliae ATCC 14706]
Length = 517
Score = 185 bits (469), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 122/374 (32%), Positives = 200/374 (53%), Gaps = 35/374 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQAI +LG+ E T IQE AIP+ + +D++ +A+TG+GKT AF IP+I KI
Sbjct: 17 LQAITELGFEEATPIQEIAIPVAMMGRDLIGQAQTGTGKTAAFGIPLISKI-----DPSE 71
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ + I +LT + V+ + I D+ Q L + P I++
Sbjct: 72 ERVVALVMTPTRELAIQVAEEIGKLTR--FKGVRSLPIYGGQDIGRQIRALKKHPQIIIG 129
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H+ KT+ L + ++ V++DEAD + G+ +D+ ++L +P+ Q +L SAT+
Sbjct: 130 TPGRLLDHINRKTIRL-NDVQTVVLDEADEMLDMGFMEDITSILSLVPEERQTMLFSATM 188
Query: 210 SEDVLSLKHLILRNPV-ILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGK 268
++ L + LR+P + + + AP+ + A+ + E K L LL + +
Sbjct: 189 PPNIQKLANQFLRDPEHVSVIPKQVSAPLIEQAYIEV--PERVKFDALSRLLDMESPE-L 245
Query: 269 TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL 328
I+F T + +L L++ S L+ +L R + + +F G DV++A+D A
Sbjct: 246 AIVFGRTKRRVDELSEALQKRGYSADGLHGDLSQNQRDNVMRKFRDGSIDVLVATDVAA- 304
Query: 329 ETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGT 388
RG+D V++VINFD P D + Y+HR GRT R +G+
Sbjct: 305 ----------------------RGLDVSGVTHVINFDLPQDPESYVHRIGRTGRAGKEGS 342
Query: 389 ALSFVSLREQDLMN 402
A SFV+ RE D +N
Sbjct: 343 AWSFVTPREIDHLN 356
>gi|336452449|ref|YP_004606915.1| cold-shock DEAD-box protein A [Helicobacter bizzozeronii CIII-1]
gi|335332476|emb|CCB79203.1| cold-shock DEAD-box protein A [Helicobacter bizzozeronii CIII-1]
Length = 470
Score = 185 bits (469), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 118/408 (28%), Positives = 210/408 (51%), Gaps = 47/408 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L++IA++G+ +P+ IQE+AIP +L+ KDV+ +A+TG+GKT AFA+P+IQ NLK +
Sbjct: 31 LKSIAEVGFTQPSPIQEKAIPAVLEGKDVIAQAQTGTGKTAAFALPIIQ---NLKNDKSI 87
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ + +L CV + + + LL P +++A
Sbjct: 88 E---ALVITPTRELAMQISDEVFKLGKNSRTRTICVYGGQSIKKQCE--LLERNPQVMIA 142
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK K L S ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 143 TPGRLLDHLKNKRLK-NFSPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 201
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+ L + IL++P+ + + + ++++ + + I+ L K N K+
Sbjct: 202 PPPIRDLANKILQDPISIHIAPTHVTNTDISQRFYVINEHERNEAIMRLLDKEN--HTKS 259
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
IIF+ + +L +L + L+ ++ +AR ++ F DV++A+D
Sbjct: 260 IIFMRMKREVDELHQFLSAKGYKSTPLHGDMEQRARRESIQAFKTKRADVLVATDV---- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 -------------------ASRGLDISDVSHVFNYHLPLNTESYIHRIGRTGRAGKKGVA 356
Query: 390 LSFVSLREQDLMNDGTALSFVSL--REQDLMNDVNEYLMTNLHEDDFI 435
++ V T L + L ++++ + + Y + N+ ED +
Sbjct: 357 ITLV-----------TPLEYKELLRMQKEIGSSIELYEIPNMDEDRLV 393
>gi|354580517|ref|ZP_08999422.1| DEAD/DEAH box helicase domain protein [Paenibacillus lactis 154]
gi|353202948|gb|EHB68397.1| DEAD/DEAH box helicase domain protein [Paenibacillus lactis 154]
Length = 529
Score = 185 bits (469), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 121/378 (32%), Positives = 201/378 (53%), Gaps = 35/378 (9%)
Query: 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIIN 82
F L LQAI +LG+ E T IQ ++IP+ L KD++ +A+TG+GKT AF +P+I KI
Sbjct: 7 FGLEPRVLQAITELGFEEATPIQSQSIPIALTGKDMIGQAQTGTGKTAAFGLPLIHKI-- 64
Query: 83 LKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVE 142
+ + ALV++P++EL Q+ + I +L+ + ++ + I D+ Q L +
Sbjct: 65 ---AKEEERIVALVMTPTRELAIQVAEEIGKLSR--FKGIRSLAIYGGQDIGRQIRALKK 119
Query: 143 RPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQA 202
+P I++ TP R L H+ KT+ L ++ V++DEAD + G+ DD++++LK +P+ Q
Sbjct: 120 KPQIIIGTPGRLLDHINRKTIRL-DDVQTVVLDEADEMLDMGFMDDIQSILKLVPENRQT 178
Query: 203 ILASATLSEDVLSLKHLILRNPV-ILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLK 261
+L SAT+ ++ L L++P + + + AP+ A+ + E +K L LL
Sbjct: 179 LLFSATMPPNIQKLASQFLKDPEHVSVIPKHVSAPLIDQAYIEV--PERQKFEALSRLLD 236
Query: 262 LNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVII 321
+ + I+F T + +L L++ S L+ +L R + +F G DV++
Sbjct: 237 MESPE-LAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQHQRDTVMRKFRDGSIDVLV 295
Query: 322 ASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTA 381
A+D A RG+D V++V+NFD P D + Y+HR GRT
Sbjct: 296 ATDVAA-----------------------RGLDVSGVTHVVNFDLPQDPESYVHRIGRTG 332
Query: 382 RGKNQGTALSFVSLREQD 399
R +GTA SFV+ RE D
Sbjct: 333 RAGKEGTAWSFVTPREMD 350
>gi|336066886|ref|YP_004561744.1| ATP-dependent RNA helicase DeaD [Erysipelothrix rhusiopathiae str.
Fujisawa]
gi|334296832|dbj|BAK32703.1| ATP-dependent RNA helicase DeaD [Erysipelothrix rhusiopathiae str.
Fujisawa]
Length = 584
Score = 184 bits (468), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 113/370 (30%), Positives = 197/370 (53%), Gaps = 33/370 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++A+ + G+ EPT IQ +AIP++L N D+L +++TG+GKT AF +PM ++L Q
Sbjct: 13 VRAVTEKGYEEPTDIQSQAIPILLGNHDLLAQSQTGTGKTAAFGLPM----LSLTQPGDK 68
Query: 90 QETKALVLSPSKELCNQLHKNIQELT-MKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
+ T +L+L P++ELC Q+ + ++ + K ++ CV +D +++ L DIVV
Sbjct: 69 KRTNSLILCPTRELCMQVAEEMRSFSKYKQGVNIACVYGGSPIDKQIRD--LKRGADIVV 126
Query: 149 ATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
ATP R + H++ KT+ L IV +DEAD + + G+ +D++ + FLP+ Q SAT
Sbjct: 127 ATPGRLMDHIRRKTIRLDDCRHIV-LDEADEMLNMGFIEDIEEIFSFLPEERQFAFFSAT 185
Query: 209 LSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGK 268
+ ++++ L L P + L + VS++ + + +K + LL+L+ G
Sbjct: 186 MPKEIVKLSEKFLVEPERITLSRNNLT-VSRIKQIYYTVESRDKVDLTIQLLQLHKTSG- 243
Query: 269 TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL 328
T+IF NT +L L + L+ ++ + R + +F +G+ V+IA+D A
Sbjct: 244 TMIFCNTKKMVDELTTQLNKAGFPALGLHGDMKQEMRSMVMSRFKKGMVSVLIATDVAA- 302
Query: 329 ETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGT 388
RGID + VIN+D P +++ Y+HR GRT R +G
Sbjct: 303 ----------------------RGIDVDSMDVVINYDIPQELEYYVHRIGRTGRAGKEGL 340
Query: 389 ALSFVSLREQ 398
A++ VS R++
Sbjct: 341 AITLVSRRQR 350
>gi|254515124|ref|ZP_05127185.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium NOR5-3]
gi|219677367|gb|EED33732.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium NOR5-3]
Length = 444
Score = 184 bits (468), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 123/376 (32%), Positives = 198/376 (52%), Gaps = 32/376 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+ K G+ E T IQ++AIPL+LQ D+L A+TG+GKT F +P++Q++ + Q Q
Sbjct: 13 LRAVEKQGYDEATPIQQKAIPLVLQGHDLLAGAQTGTGKTAGFTLPLLQRLQSKYQDVQK 72
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
K LVL+P++EL Q+H+++++ + I V ++ Q+ L++ DIVVA
Sbjct: 73 SFPKVLVLTPTRELAAQVHESVRDYGRYLP--FRSAVIFGGVSINPQKQKLIKGVDIVVA 130
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H++ +++DL S +EI+++DEAD + G+ D++ V+K +PK Q +L SAT
Sbjct: 131 TPGRLLDHVQQRSIDL-SRIEILVLDEADRMLDMGFIHDIRRVMKVIPKKRQTLLFSATF 189
Query: 210 SEDVLSLKHLILRNPVILKL--EEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
S ++ L L P +++ + A VSQL + ++ K +L + Q
Sbjct: 190 SSEIKKLASEFLEQPEQIQVTPQNTATTLVSQLVYP---VDKNRKRELLSQQIGEGNWQ- 245
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
+ +IF T KL L++ IS ++ AR A+ F G ++A+D A
Sbjct: 246 QVLIFTRTKHGANKLAEQLDKDGISAAAIHGNKSQGARTRALGDFKAGTIRALVATDIAA 305
Query: 328 LETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQG 387
RGID + +V+NF+ P + YIHR GRTAR QG
Sbjct: 306 -----------------------RGIDIDKLPHVVNFELPNVPEDYIHRIGRTARAGQQG 342
Query: 388 TALSFVSLREQDLMND 403
A+S V + E L+ D
Sbjct: 343 HAISLVCVDELKLLRD 358
>gi|441503681|ref|ZP_20985683.1| ATP-dependent RNA helicase SrmB [Photobacterium sp. AK15]
gi|441428757|gb|ELR66217.1| ATP-dependent RNA helicase SrmB [Photobacterium sp. AK15]
Length = 411
Score = 184 bits (468), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 124/373 (33%), Positives = 190/373 (50%), Gaps = 30/373 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQAI +G+ PT+IQ +AIP L +DVL A TG+GKT AF +PMIQ + + + +
Sbjct: 14 LQAIETIGYARPTVIQAQAIPHALDGRDVLASAPTGTGKTAAFLLPMIQHLQDFPRK-KP 72
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ LVL+P++EL Q+ +EL+ ++K I+ + LL + DIVVA
Sbjct: 73 GPARVLVLTPTRELAIQVADQARELSQFT--NLKVFTITGGISYDEHAELLGKTQDIVVA 130
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + +++A+ D + ++E +I+DEAD + G+ ++ + Q++L SATL
Sbjct: 131 TPGRLMEYIEAERFDCR-AIECLILDEADRMLDMGFGKAVEKINHECRWRRQSLLFSATL 189
Query: 210 -SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGK 268
+ V IL PV + E P +YH + K +L +LK +
Sbjct: 190 EGKGVREFSRTILNEPVEVNAEPPRRERKKIHQYYHRCDHMEHKLALLENILKEQ--AER 247
Query: 269 TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL 328
TIIFV T ++ L+ L K+ C L E+ AR +++ +F G +V+IA+D A
Sbjct: 248 TIIFVKTRERLATLRDQLAAMKVPCCWLQGEMAQAARNNSISRFRDGTVNVLIATDVAA- 306
Query: 329 ETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGT 388
RGID VS+VINFD P Y+HR GRTAR +GT
Sbjct: 307 ----------------------RGIDLPDVSHVINFDMPRTADIYLHRIGRTARAGKKGT 344
Query: 389 ALSFVSLREQDLM 401
A+S V +Q ++
Sbjct: 345 AISLVEAHDQTMI 357
>gi|449666070|ref|XP_002163050.2| PREDICTED: probable ATP-dependent RNA helicase DDX47-like, partial
[Hydra magnipapillata]
Length = 431
Score = 184 bits (468), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 119/365 (32%), Positives = 188/365 (51%), Gaps = 34/365 (9%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ 90
++ +LGW PT IQ AIPL L+ KD++ A TGSGKTGAFA+P++Q +++ Q
Sbjct: 8 ESCLRLGWTHPTKIQREAIPLALEGKDIIGLAETGSGKTGAFALPVLQTLLD-----NPQ 62
Query: 91 ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVAT 150
ALV++P++EL Q+ + + L S +KC I VD+ Q L ++P IV+AT
Sbjct: 63 RLYALVITPTRELAFQISEQFEAL--GSSIGIKCAVIVGGVDLMTQSLALTKKPHIVIAT 120
Query: 151 PARALAHLK-AKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
P R + HL+ K L+ SL+ +I+DEAD + + +E+++ +LK +PK L SAT+
Sbjct: 121 PGRLVDHLENTKGFSLR-SLKYLIMDEADRILNMDFEEEVNKILKVIPKERSTYLFSATM 179
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
++ V L+ L+NPV +++ V +L +I K L ++L +L
Sbjct: 180 TKKVAKLQRASLKNPVKVEV-STKFQTVEKLQQSYIFIPNKFKDCYLVSILN-DLAGNSF 237
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
IIF T + ++ L L L+ ++ R A+ ++ ++IA+D
Sbjct: 238 IIFCGTCNNVQRVCLLLRHLGFHAVPLHGQMTQAKRLGALNKYKSKSRTILIATDV---- 293
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D V VINFD P + YIHR GRTAR G +
Sbjct: 294 -------------------ASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRS 334
Query: 390 LSFVS 394
++FV+
Sbjct: 335 ITFVT 339
>gi|406973607|gb|EKD96982.1| hypothetical protein ACD_23C01154G0002, partial [uncultured
bacterium]
Length = 475
Score = 184 bits (468), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 116/376 (30%), Positives = 201/376 (53%), Gaps = 31/376 (8%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII---NLKQTA 87
+A+A++G+ T IQ +AIP++LQ +DV+ A+TG+GKT AFA+P++Q+++ N +
Sbjct: 14 RAVAEMGYETMTPIQAQAIPVVLQGRDVMGAAQTGTGKTAAFALPLMQRMLKHENASTSP 73
Query: 88 QVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
+ALVL P++EL Q+ + + EL K + +++ + +D+ Q L + +++
Sbjct: 74 ARHPVRALVLLPTRELAVQVAEQV-ELYGKYT-NLRSAVVFGGMDMKPQTIELKKGVEVL 131
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
VATP R L H++AK L + +E V++DEAD + G+ D++ +L +LPK +L SA
Sbjct: 132 VATPGRLLDHIEAKNCVL-NQVEYVVLDEADRMLDIGFLPDLQRILSYLPKQRTTLLFSA 190
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
T S ++ L L++PV +++ A + H++ + ED++ + L + + Q
Sbjct: 191 TFSPEIKRLASSYLQDPVTIEVARSNAAASTVEQHFYSVEGEDKRHALHQILRQRGIKQ- 249
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
+FVN+ C +L LE + T L+ + R A+ F G D+++ +D A
Sbjct: 250 -AFVFVNSKLGCARLARSLEHEGLKTTALHGDKSQDERLKALESFKSGGVDLLVCTDVAA 308
Query: 328 LETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQG 387
RG+D + V V NFD P + Y+HR GRT R +G
Sbjct: 309 -----------------------RGLDIKDVPAVFNFDIPFHAEDYVHRIGRTGRAGAEG 345
Query: 388 TALSFVSLREQDLMND 403
A++FVS +Q L+ D
Sbjct: 346 LAVTFVSKSDQRLVTD 361
>gi|127511701|ref|YP_001092898.1| ATP-dependent RNA helicase SrmB [Shewanella loihica PV-4]
gi|126636996|gb|ABO22639.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
Length = 419
Score = 184 bits (467), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 115/365 (31%), Positives = 192/365 (52%), Gaps = 29/365 (7%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ +G L PT IQ++ IPL L++KD+L RA TG+GKT +F +P +Q +++ +
Sbjct: 26 LESLKAMGHLAPTTIQQQTIPLALEHKDILARAPTGTGKTASFLLPALQHLLDFPRRYSG 85
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
Q + L+L+P++EL +Q+H+ L D+ I+ V + QE L E DI+VA
Sbjct: 86 Q-ARVLILAPTRELASQVHRYASHLATGLGLDIAI--ITGGVPYAPQEQALKENIDILVA 142
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + +L + D + S+EI+++DEAD + G+ ++++ + +L SATL
Sbjct: 143 TPGRLMEYLDKELFDAQ-SVEILVLDEADRMLDMGFSSAVQSIAIEAQQRKHNMLFSATL 201
Query: 210 SEDVLS-LKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGK 268
+S ++L NPV ++ + P H+ ++ K +L +LK V +
Sbjct: 202 EGGGVSRFAEMLLTNPVTIETKPPRSEKAKIHQWMHLADDKEHKFALLCDILKREEVS-R 260
Query: 269 TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL 328
I+FV T + L+ L+Q I + ++ KAR A+ +F +G +V++A+D A
Sbjct: 261 AIVFVKTREVVASLEGQLQQAGIHCAFMRGDMEQKARFQALGRFTKGEVNVLLATDVAA- 319
Query: 329 ETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGT 388
RGID +++VINFD P Y+HR GRT R N+GT
Sbjct: 320 ----------------------RGIDIDGITHVINFDMPRSADTYVHRIGRTGRAGNKGT 357
Query: 389 ALSFV 393
A+S V
Sbjct: 358 AISLV 362
>gi|374367571|ref|ZP_09625632.1| helicase [Cupriavidus basilensis OR16]
gi|373100874|gb|EHP41934.1| helicase [Cupriavidus basilensis OR16]
Length = 496
Score = 184 bits (467), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 117/380 (30%), Positives = 199/380 (52%), Gaps = 35/380 (9%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV- 89
+A+++ G+ +PT IQE+AIP++LQ KDV+ A+TG+GKT FA+P+IQ+++ L +
Sbjct: 26 RALSEQGYTKPTPIQEQAIPVVLQGKDVMGAAQTGTGKTAGFALPIIQRLLPLASASASP 85
Query: 90 --QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
+AL+L+P++EL +Q++ N+ D++ + VD++ Q L +I+
Sbjct: 86 ARHPVRALMLTPTRELADQVYDNVARYARFT--DLRSTVVFGGVDMNPQTEALRRGVEIL 143
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
VATP R L H++ K+++L S ++++++DEAD + G+ D++ ++ LP Q +L SA
Sbjct: 144 VATPGRLLDHVQQKSVNL-SQVQMLVLDEADRMLDMGFLPDLQRIINLLPAQRQTLLFSA 202
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQED-EKATILYTLLKLNLVQ 266
T S ++ L L PV +++ A ++ + ED K + LLK +
Sbjct: 203 TFSSEIKRLAASYLHQPVTIEVARSNSA--NENVRQTVFQVEDGHKQAAVVHLLKKRAAE 260
Query: 267 G---KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIAS 323
G + I+FVN+ C +L +LE+ I+ ++ + R + F QG D ++A+
Sbjct: 261 GLSRQCIVFVNSKIGCSRLARHLEREGINAAAIHGDKTQTERMQTLDGFKQGNIDALVAT 320
Query: 324 DEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARG 383
D A RG+D + VINFD P + YIHR GRT R
Sbjct: 321 DVAA-----------------------RGLDIPDMPCVINFDLPFSAEDYIHRIGRTGRA 357
Query: 384 KNQGTALSFVSLREQDLMND 403
G ALS ++ L+ D
Sbjct: 358 GASGDALSIYVPADERLLVD 377
>gi|197097992|ref|NP_001127511.1| probable ATP-dependent RNA helicase DDX56 [Pongo abelii]
gi|55730816|emb|CAH92127.1| hypothetical protein [Pongo abelii]
Length = 185
Score = 184 bits (467), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 86/166 (51%), Positives = 123/166 (74%), Gaps = 2/166 (1%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+ LGW PTLIQE+AIPL L+ KD+L RARTGSGKT A+AIPM+Q +++ K T V
Sbjct: 19 LQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQLLLHRKATGPV 78
Query: 90 --QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
Q + LVL P+KEL Q IQ+L C+RDV+ ++S D + Q +L+E+PD+V
Sbjct: 79 VEQAVRGLVLVPTKELARQAQSMIQQLATYCARDVRVANVSAAEDSASQRAVLMEKPDVV 138
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVL 193
V TP+R L+HL+ +L L+ SLE++++DEADL+FSFG+E+++K++L
Sbjct: 139 VGTPSRILSHLQQDSLKLRDSLELLVVDEADLLFSFGFEEELKSLL 184
>gi|421750235|ref|ZP_16187502.1| helicase, partial [Cupriavidus necator HPC(L)]
gi|409770743|gb|EKN53287.1| helicase, partial [Cupriavidus necator HPC(L)]
Length = 423
Score = 184 bits (467), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 120/390 (30%), Positives = 204/390 (52%), Gaps = 37/390 (9%)
Query: 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII 81
+F L L+A+++ G+ +PT IQ +AIP++L KDV+ A+TG+GKT FA+P+IQ+++
Sbjct: 23 SFGLDPRVLRALSEQGYTKPTPIQAQAIPVVLLGKDVMGAAQTGTGKTAGFALPIIQRLL 82
Query: 82 ---NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEP 138
N + +AL+L+P++EL +Q++ N+ D++ + VD++ Q
Sbjct: 83 PLANASASPARHPVRALMLTPTRELADQVYDNVARYARHT--DLRSTVVFGGVDMNPQTD 140
Query: 139 LLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPK 198
L +I+VATP R L H++ K+++L S ++++++DEAD + G+ D++ ++ LP
Sbjct: 141 ALRRGVEILVATPGRLLDHVQQKSVNL-SQVQMLVLDEADRMLDMGFLPDLQRIINLLPA 199
Query: 199 LYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIA--PVSQLAHYHILAQEDEKATIL 256
Q +L SAT S ++ L L PV +++ A V Q Y + Q+ +K +
Sbjct: 200 KRQTLLFSATFSPEIKKLAASYLHQPVTIEVARSNSANENVRQTV-YQV--QDGQKQEAV 256
Query: 257 YTLLKLNLVQG---KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFN 313
LLK QG + I+FVN+ C +L +LE+ I+ ++ + R + F
Sbjct: 257 VHLLKQRADQGLSRQCIVFVNSKIGCSRLARHLEREGINAAAIHGDKTQTERMQTLEGFK 316
Query: 314 QGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCY 373
QG D ++A+D A RG+D + VINFD P + + Y
Sbjct: 317 QGTIDALVATDVAA-----------------------RGLDIADMPCVINFDLPFNAEDY 353
Query: 374 IHRAGRTARGKNQGTALSFVSLREQDLMND 403
+HR GRT R G ALS ++ L+ D
Sbjct: 354 VHRIGRTGRAGATGDALSIFVPGDERLLAD 383
>gi|409438235|ref|ZP_11265322.1| RNA helicase [Rhizobium mesoamericanum STM3625]
gi|408750101|emb|CCM76489.1| RNA helicase [Rhizobium mesoamericanum STM3625]
Length = 546
Score = 184 bits (467), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 120/393 (30%), Positives = 199/393 (50%), Gaps = 35/393 (8%)
Query: 20 PFTFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQK 79
P TLF +LG +PT IQE+AIPL+L+ +D++ A+TG+GKT AF +P+I+K
Sbjct: 12 PIVATLF--------QLGIEKPTPIQEKAIPLLLEGRDLIGLAQTGTGKTAAFGLPLIEK 63
Query: 80 IINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL 139
+I ++ + T+ L+L+P++EL NQ+ +N++ K + V V ++ Q+
Sbjct: 64 LIPEERRPDNRTTRTLILAPTRELVNQIAQNLKNFLRKSHLRINVV--VGGVSINKQQLQ 121
Query: 140 LVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199
L + DI+VATP R L + + + L +++ +++DEAD + G+ D++ + K +PK
Sbjct: 122 LEKGTDILVATPGRLLDLVARRAIGL-TAVRYLVLDEADQMLDLGFVHDLRKIAKMVPKK 180
Query: 200 YQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTL 259
Q +L SAT+ + + L L NPV +++ P A + H + +++K +L
Sbjct: 181 RQTMLFSATMPKSIADLAGEYLTNPVTVEVTPPGKAADKVEQYVHFVNGKNDKTDLLKKS 240
Query: 260 LKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDV 319
L N G+ I+F+ T KL +L+ S ++ R A+ F G
Sbjct: 241 LTEN-PDGRAIVFLRTKHGAEKLMKHLDHVGYSVASIHGNKSQGQRERALKAFRDGDIKT 299
Query: 320 IIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGR 379
+IA+D A RGID VS+V N+D P Y+HR GR
Sbjct: 300 LIATDVAA-----------------------RGIDIPAVSHVYNYDLPEVPDAYVHRIGR 336
Query: 380 TARGKNQGTALSFVSLREQDLMNDGTALSFVSL 412
TAR G A++F + E L+ D L +S+
Sbjct: 337 TARAGRDGIAIAFCAPDETRLLRDIERLMNISI 369
>gi|301119991|ref|XP_002907723.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
gi|262106235|gb|EEY64287.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
Length = 479
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 119/395 (30%), Positives = 202/395 (51%), Gaps = 41/395 (10%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ 90
+AI +GW P+ IQ++AIP L KD++ A TGSGKTGAF IP++Q +++ Q
Sbjct: 41 EAIEAVGWSAPSKIQQQAIPHGLAGKDIIGLAETGSGKTGAFVIPILQSLLH-----NPQ 95
Query: 91 ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVAT 150
ALVL+P++EL Q+ + + L S +KC + +D+ Q+ L +P +V+AT
Sbjct: 96 RLYALVLAPTRELAYQIGEQFEAL--GASIGLKCACVVGGIDMMQQQVALARKPHVVIAT 153
Query: 151 PARALAHLK-AKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
P R + HL+ K L+ +++ +++DEAD + S +E+++ +++ +P L SAT+
Sbjct: 154 PGRLVDHLENTKGFSLR-TMKFLVLDEADRMLSMDFEEEINQIVQLMPADRNTYLFSATM 212
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+ V L+ L++PV +++ P + HY + + + + Y LN V G++
Sbjct: 213 TSKVRKLQRASLKDPVKVEITHKFATPETLKQHYLFIPAKFKDCYLAYV---LNEVAGQS 269
Query: 270 I-IFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL 328
+ IF +T + K+ L L L+ ++P +R A+ +F +V++ +D
Sbjct: 270 VLIFASTCNGTQKVTLMLRNLGFQAICLHGQMPQPSRLGALNKFKAKARNVLVCTDV--- 326
Query: 329 ETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGT 388
SRG+D V VIN+D P + YIHR GRTAR G
Sbjct: 327 --------------------ASRGLDIPSVDVVINYDIPTHGKDYIHRVGRTARAGRAGV 366
Query: 389 ALSFVSLREQDLMND-----GTALSFVSLREQDLM 418
A+SFV+ + +L GT L S E+ ++
Sbjct: 367 AISFVTQYDVELYQRIEHLLGTKLDAYSCEEETVL 401
>gi|295702421|ref|YP_003595496.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319]
gi|294800080|gb|ADF37146.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319]
Length = 503
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 112/373 (30%), Positives = 196/373 (52%), Gaps = 33/373 (8%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ 90
+A++K+G+ E T IQ IPL L+ D++ +A+TG+GKT AF IP+I+K+ V
Sbjct: 15 KAVSKMGFEEATPIQSETIPLALEGHDLIGQAQTGTGKTAAFGIPLIEKV-----DVNVD 69
Query: 91 ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVAT 150
+ L+++P++EL Q+ + + ++ ++ V+ + I D+S Q L + P I+V T
Sbjct: 70 AIQGLIIAPTRELAVQVSEELYKIGQ--TKRVRVLSIYGGQDISRQIRALKKHPHIIVGT 127
Query: 151 PARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLS 210
P R L H+ +TL L+ + VI+DEAD + + G+ +D++ +L +P+ +Q +L SAT+
Sbjct: 128 PGRMLDHINRRTLRLQ-DVHTVILDEADEMLNMGFIEDIEKILSNVPENHQTLLFSATMP 186
Query: 211 EDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTI 270
+ + + P ++K++ + + + Y++ QE K IL LL + + I
Sbjct: 187 TPIRRIAEKFMNEPKVVKVQAKEVT-MPNITQYYLEVQEKRKFDILTRLLDMQSPE-LAI 244
Query: 271 IFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALET 330
IF T + +L L S ++ +L R + QF +G DV++A+D A
Sbjct: 245 IFGRTKRRVDELSEALNMRGYSAQGIHGDLTQSKRLSVLRQFKEGSIDVLVATDVAA--- 301
Query: 331 PQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTAL 390
RG+D V++V NFD P D + Y+HR GRT R G A+
Sbjct: 302 --------------------RGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKMGAAM 341
Query: 391 SFVSLREQDLMND 403
+FV+ RE +++
Sbjct: 342 TFVTPRETGQLHN 354
>gi|389574285|ref|ZP_10164350.1| ATP-dependent RNA helicase [Bacillus sp. M 2-6]
gi|388426047|gb|EIL83867.1| ATP-dependent RNA helicase [Bacillus sp. M 2-6]
Length = 516
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 121/410 (29%), Positives = 217/410 (52%), Gaps = 49/410 (11%)
Query: 19 LPFTFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIP 75
L TF F + ++AI ++G+ E T IQ IPL LQNKDV+ +A+TG+GKT AF IP
Sbjct: 18 LTITFQDFQLSESLMKAINRMGFEEATPIQAETIPLGLQNKDVIGQAQTGTGKTAAFGIP 77
Query: 76 MIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSV 135
+++KI Q A++++P++EL Q+ + + ++ + + + I D+
Sbjct: 78 LVEKIDPASPNIQ-----AIIIAPTRELAIQVSEELYKIGQ--DKRARVLPIYGGQDIGR 130
Query: 136 QEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKF 195
Q L + P I+V TP R L H+ +T+ L+ ++E V++DEAD + + G+ +D++++L
Sbjct: 131 QIRSLKKNPHIIVGTPGRLLDHINRRTMRLQ-NVETVVLDEADEMLNMGFIEDIESILSN 189
Query: 196 LPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATI 255
+P +Q +L SAT+ + + + NP +K++ + VS + +++ E +K
Sbjct: 190 VPSEHQTLLFSATMPAPIKRIAERFMTNPEHVKVKAKEMT-VSNIQQFYLDIHERKKFDT 248
Query: 256 LYTLL-----KLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVY 310
L LL +L++V G+T V+ + + L+ Y + ++ +L R A+
Sbjct: 249 LTRLLDIQSPELSIVFGRTKRRVDELTEALNLRGYTAEG------IHGDLTQAKRMVALR 302
Query: 311 QFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDI 370
+F +G DV++A+D A RG+D V++V NFD P D
Sbjct: 303 KFKEGSIDVLVATDVAA-----------------------RGLDISGVTHVYNFDVPQDP 339
Query: 371 QCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMND 420
+ Y+HR GRT R G A++F++ RE+D++ A+ + R+ D M +
Sbjct: 340 ESYVHRIGRTGRAGRTGMAMTFITPREKDMLR---AIEQTTKRKMDRMKE 386
>gi|407686365|ref|YP_006801538.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Balearic
Sea AD45']
gi|407289745|gb|AFT94057.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Balearic
Sea AD45']
Length = 596
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 122/384 (31%), Positives = 198/384 (51%), Gaps = 35/384 (9%)
Query: 21 FTFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMI 77
TF +P LQA+ K+G+ +P+ IQ +IPL+L+ D+L +A+TG+GKT AFA+PM+
Sbjct: 7 MTFKDLNLPEPILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAAFALPML 66
Query: 78 QKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQE 137
I ++ Q+ LVL+P++EL Q+ + Q + S+ +K + + Q
Sbjct: 67 ANIDPEQRKPQL-----LVLAPTRELAIQVAEAFQ-VYASFSQKIKVLPVYGGQSYDNQI 120
Query: 138 PLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLP 197
L +VV TP R + H+K KTLDL S L+ +++DEAD + G+ DD++ +L P
Sbjct: 121 RQLKRGVQVVVGTPGRIIDHIKRKTLDL-SELKFLVLDEADEMLRMGFIDDVELILSHAP 179
Query: 198 KLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILY 257
+ Q L SAT+ + + L++P +K+ ++ S + + K L
Sbjct: 180 EERQTALFSATMPGPIKKITQRYLKDPKHVKIAS-KVSTASTIRQRYCQIAPHHKLEALT 238
Query: 258 TLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLY 317
++++ + G IIFV T +L L LN ++P AR V + QG
Sbjct: 239 RIMEVEVFDG-MIIFVRTKTATVELADKLSARGYDVEPLNGDIPQAARERTVEKLKQGKI 297
Query: 318 DVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRA 377
D+++A+D V+RG+D + VS+VIN+D P D + Y+HR
Sbjct: 298 DILVATDV-----------------------VARGLDVERVSHVINYDIPYDSESYVHRI 334
Query: 378 GRTARGKNQGTALSFVSLREQDLM 401
GRT R QG A+ F+S RE+ L+
Sbjct: 335 GRTGRAGRQGDAILFISHREKRLL 358
>gi|323342311|ref|ZP_08082543.1| DEAD/DEAH family ATP-dependent RNA helicase [Erysipelothrix
rhusiopathiae ATCC 19414]
gi|322463423|gb|EFY08617.1| DEAD/DEAH family ATP-dependent RNA helicase [Erysipelothrix
rhusiopathiae ATCC 19414]
Length = 594
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 113/370 (30%), Positives = 197/370 (53%), Gaps = 33/370 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++A+ + G+ EPT IQ +AIP++L N D+L +++TG+GKT AF +PM ++L Q
Sbjct: 29 VRAVTEKGYEEPTDIQSQAIPILLGNHDLLAQSQTGTGKTAAFGLPM----LSLTQPGDK 84
Query: 90 QETKALVLSPSKELCNQLHKNIQELT-MKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
+ T +L+L P++ELC Q+ + ++ + K ++ CV +D +++ L DIVV
Sbjct: 85 KRTNSLILCPTRELCMQVAEEMRSFSKYKQGVNIACVYGGSPIDKQIRD--LKRGADIVV 142
Query: 149 ATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
ATP R + H++ KT+ L IV +DEAD + + G+ +D++ + FLP+ Q SAT
Sbjct: 143 ATPGRLMDHIRRKTIRLDDCRHIV-LDEADEMLNMGFIEDIEEIFSFLPEERQFAFFSAT 201
Query: 209 LSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGK 268
+ ++++ L L P + L + VS++ + + +K + LL+L+ G
Sbjct: 202 MPKEIVKLSEKFLVEPERITLSRNNLT-VSRIKQIYYTVESRDKVDLTIQLLQLHKTSG- 259
Query: 269 TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL 328
T+IF NT +L L + L+ ++ + R + +F +G+ V+IA+D A
Sbjct: 260 TMIFCNTKKMVDELTTQLNKAGFPALGLHGDMKQEMRSMVMSRFKKGMVSVLIATDVAA- 318
Query: 329 ETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGT 388
RGID + VIN+D P +++ Y+HR GRT R +G
Sbjct: 319 ----------------------RGIDVDSMDVVINYDIPQELEYYVHRIGRTGRAGKEGL 356
Query: 389 ALSFVSLREQ 398
A++ VS R++
Sbjct: 357 AITLVSRRQR 366
>gi|226315226|ref|YP_002775122.1| ATP-dependent RNA helicase [Brevibacillus brevis NBRC 100599]
gi|226098176|dbj|BAH46618.1| putative ATP-dependent RNA helicase [Brevibacillus brevis NBRC
100599]
Length = 513
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 111/377 (29%), Positives = 203/377 (53%), Gaps = 33/377 (8%)
Query: 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIIN 82
F L ++A++ +G+ E T IQ++ +P+ LQ +D++ +A+TG+GKT AF IP+I+++
Sbjct: 7 FGLHHSIVRALSNMGFEEATAIQDQTVPVALQGRDLIGQAQTGTGKTAAFGIPLIERMDE 66
Query: 83 LKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVE 142
Q +VL+P++EL Q+ + I ++ +++ + I D++ Q L +
Sbjct: 67 TSGNIQ-----GVVLTPTRELAVQVAEEINKIAQ--FKNISALPIYGGQDITRQIKALKK 119
Query: 143 RPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQA 202
RP I+VATP R + H++ +T+ L ++E+V++DEAD + + G+ DD+K +LK +P+ Q
Sbjct: 120 RPQIIVATPGRFMDHMRRRTIRL-DAIEVVVLDEADEMLNMGFIDDIKEILKEVPESRQT 178
Query: 203 ILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKL 262
+L SAT+ + + + P I++++ + V +A ++ E +K +L LL +
Sbjct: 179 LLFSATMPRAIQEIAQQFMNEPTIIQVKAKEVT-VPNIAQEYMEVAEKQKFDVLCRLLDI 237
Query: 263 NLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIA 322
+ + IIF T + +L L + ++ +L R + +F +G +V++A
Sbjct: 238 HSPE-LAIIFGRTKRRVDELSEALTKRGYGAEGIHGDLNQAKRDSVLRKFKEGTIEVLVA 296
Query: 323 SDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTAR 382
+D A RG+D V++V NFD P D + Y+HR GRT R
Sbjct: 297 TDVAA-----------------------RGLDISGVTHVFNFDIPQDSESYVHRIGRTGR 333
Query: 383 GKNQGTALSFVSLREQD 399
G A++FV+ RE D
Sbjct: 334 AGKTGLAITFVTSREID 350
>gi|348689923|gb|EGZ29737.1| hypothetical protein PHYSODRAFT_309945 [Phytophthora sojae]
Length = 482
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 113/366 (30%), Positives = 191/366 (52%), Gaps = 36/366 (9%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ 90
+AI +GW +P+ IQ++AIP L KD++ A TGSGKTGAF IP++Q ++ Q
Sbjct: 44 EAIEAVGWSQPSKIQQQAIPHGLAGKDIIGLAETGSGKTGAFVIPILQSLLR-----NPQ 98
Query: 91 ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVAT 150
ALVL+P++EL Q+ + + L S +KC + +D+ Q+ L +P +V+AT
Sbjct: 99 RLYALVLAPTRELAYQIGEQFEALG--ASIGLKCACVVGGIDMMQQQVALARKPHVVIAT 156
Query: 151 PARALAHLK-AKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
P R + HL+ K L+ +++ +++DEAD + S +E+++ +++ +P L SAT+
Sbjct: 157 PGRLVDHLENTKGFSLR-TMKFLVLDEADRMLSMDFEEEINQIVQLMPAERNTYLFSATM 215
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+ V L+ L++PV +++ P + HY + + + + Y LN V G++
Sbjct: 216 TSKVRKLQRASLKDPVKVEITHKFATPETLKQHYLFIPAKFKDCYLAYV---LNEVAGQS 272
Query: 270 I-IFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL 328
+ IF +T + K+ L L L+ ++P +R A+ +F +V++ +D
Sbjct: 273 VLIFASTCNGTQKVTLMLRNLGFQAICLHGQMPQPSRLGALNKFKAKARNVLVCTDV--- 329
Query: 329 ETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGT 388
SRG+D V VIN+D P + YIHR GRTAR G
Sbjct: 330 --------------------ASRGLDIPSVDVVINYDIPTHGKDYIHRVGRTARAGRAGV 369
Query: 389 ALSFVS 394
A+SFV+
Sbjct: 370 AISFVT 375
>gi|342217228|ref|ZP_08709875.1| type III restriction enzyme, res subunit [Peptoniphilus sp. oral
taxon 375 str. F0436]
gi|341588118|gb|EGS31518.1| type III restriction enzyme, res subunit [Peptoniphilus sp. oral
taxon 375 str. F0436]
Length = 548
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 117/370 (31%), Positives = 188/370 (50%), Gaps = 31/370 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AI +G+ P+ +QE IP ILQ D+L +A+TG+GKT +F IPMI+KI Q Q+
Sbjct: 13 LRAIDDMGFERPSEVQEATIPYILQGNDILAQAQTGTGKTASFGIPMIEKI----QDKQL 68
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ + LVL P++EL Q+ + +++L K R +K I D+ Q L IVV
Sbjct: 69 KSPQGLVLVPTRELARQVTEELKKLA-KYKRFIKLAAIYGGADMGKQLSQLRNGTSIVVG 127
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + H+K K+L L LE +++DEAD +F G+ DDMK +++ Q + SAT
Sbjct: 128 TPGRIMDHMKRKSLQL-DQLEFLVLDEADEMFDMGFRDDMKTIIEKTNPNRQTLFFSATF 186
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
++ L P + LE+ + ++ Y++ + K IL LL ++ K+
Sbjct: 187 DNNIKDFSKLYQDKPKKVILEKKELT-AEKIHQYYLELNRNMKTEILNRLLLIHRPN-KS 244
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
IIF NT L++ + Q L+ ++ +R + +F G D++IA+D A
Sbjct: 245 IIFCNTKKMVDSLEVEMAQKGYQVASLHGDMRQSSRDQVMKKFRDGSIDLLIATDVAA-- 302
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
RG+D + V N+D P + Y+HR GRTAR +G +
Sbjct: 303 ---------------------RGLDVSDIDLVFNYDLPQQSEYYVHRIGRTARAGKKGIS 341
Query: 390 LSFVSLREQD 399
+FV+ ++ D
Sbjct: 342 FTFVTNKDYD 351
>gi|319654684|ref|ZP_08008763.1| ATP-dependent RNA helicase [Bacillus sp. 2_A_57_CT2]
gi|317393600|gb|EFV74359.1| ATP-dependent RNA helicase [Bacillus sp. 2_A_57_CT2]
Length = 472
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 115/372 (30%), Positives = 196/372 (52%), Gaps = 43/372 (11%)
Query: 36 LGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKAL 95
+G+ E T IQ + IPL L+NKD++ +A+TG+GKT AF IPMI KI N K Q +
Sbjct: 1 MGFEEATPIQAQTIPLSLENKDLIGQAQTGTGKTAAFGIPMIDKIDNTKDFIQ-----GI 55
Query: 96 VLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARAL 155
V++P++EL Q+ + + ++ + K + I D++ Q L +P I+V TP R L
Sbjct: 56 VIAPTRELAIQVSEELYKIG--YGKRTKVLSIYGGQDINRQIRALKNKPHIIVGTPGRIL 113
Query: 156 AHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSEDVLS 215
H+ KT+ L + I+DEAD + + G+ DD++A+L +P+ Q +L SAT+ +
Sbjct: 114 DHINRKTMRL-DHVHTAILDEADEMLNMGFIDDIEAILAQIPEERQTLLFSATMPAPIRR 172
Query: 216 LKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLL-----KLNLVQGKTI 270
+ ++ P I++++ + VS + Y+I E K +L LL +L +V G+T
Sbjct: 173 MAERFMKEPQIVRVKAKEMT-VSSIEQYYIEVHEKNKFDVLTRLLDIQSPELAIVFGRTK 231
Query: 271 IFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALET 330
V+ + + L+ Y+ + ++ +L R + +F +G DV++A+D A
Sbjct: 232 RRVDELAEALNLRGYMAEG------IHGDLSQAKRISVLRKFKEGSIDVLVATDVAA--- 282
Query: 331 PQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTAL 390
RG+D V++V NFD P D + Y+HR GRT R G A+
Sbjct: 283 --------------------RGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAM 322
Query: 391 SFVSLREQDLMN 402
+F++ RE+ ++
Sbjct: 323 TFINPREKSYLH 334
>gi|402814785|ref|ZP_10864378.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus alvei DSM
29]
gi|402507156|gb|EJW17678.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus alvei DSM
29]
Length = 526
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 123/384 (32%), Positives = 197/384 (51%), Gaps = 36/384 (9%)
Query: 22 TFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQ 78
TF F + LQAI +LG+ E T IQE+AIP+ + +D++ +A+TG+GKT AF IP+I
Sbjct: 3 TFAEFGLEPKVLQAITELGFEESTPIQEKAIPVAMTGRDLIGQAQTGTGKTAAFGIPLIS 62
Query: 79 KIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEP 138
KI + KAL+++P++EL Q+ I +LT + V+ + I D+ Q
Sbjct: 63 KI-----DPTEERVKALIMTPTRELAIQVADEIGKLTR--FKGVRSLPIYGGQDIGRQIR 115
Query: 139 LLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPK 198
L + P I++ TP R L H+ KT+ L + V++DEAD + G+ +D+ ++L +P+
Sbjct: 116 ALKKHPQIIIGTPGRLLDHINRKTIRL-DDVATVVLDEADEMLDMGFMEDITSILSLVPE 174
Query: 199 LYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYT 258
Q +L SAT+ ++ L + LR P + + P + +I E K L
Sbjct: 175 QRQTMLFSATMPPNIQKLANQFLREPEHVSV-MPKHVSAPLIDQAYIEVPERVKFDALSR 233
Query: 259 LLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYD 318
LL + + I+F T + +L L++ S L+ +L R + +F G D
Sbjct: 234 LLDMESPE-LAIVFGRTKRRVDELSEALQKRGYSADGLHGDLSQNQRDTVMRKFRDGSID 292
Query: 319 VIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAG 378
V++A+D A RG+D V++VINFD P D + Y+HR G
Sbjct: 293 VLVATDVAA-----------------------RGLDVSGVTHVINFDLPQDPESYVHRIG 329
Query: 379 RTARGKNQGTALSFVSLREQDLMN 402
RT R +G+A SFV+ RE D ++
Sbjct: 330 RTGRAGKEGSAWSFVTPREIDHLH 353
>gi|251796145|ref|YP_003010876.1| DEAD/DEAH box helicase [Paenibacillus sp. JDR-2]
gi|247543771|gb|ACT00790.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. JDR-2]
Length = 535
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 122/386 (31%), Positives = 208/386 (53%), Gaps = 40/386 (10%)
Query: 22 TFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQ 78
TF F + LQAI +LG+ E T IQ+++IP+ + D++ +A+TG+GKT AF IP+I
Sbjct: 3 TFAEFGLEPKVLQAITELGFEESTPIQDKSIPIAMAGSDMIGQAQTGTGKTAAFGIPLIN 62
Query: 79 KI-INLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQE 137
KI IN ++ AL+++P++EL Q+ I +LT + ++ + I ++ Q
Sbjct: 63 KISINEERIV------ALIMTPTRELAIQVADEIGKLTK--YKGLRSLPIYGGQEIGRQI 114
Query: 138 PLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLP 197
L ++P I++ TP R L H+ KT+ L+ ++ V++DEAD + G+ +D++++LK +P
Sbjct: 115 RALKKKPQIIIGTPGRLLDHINRKTIKLED-VQTVVLDEADEMLDMGFMEDIQSILKQVP 173
Query: 198 KLYQAILASATLSEDVLSLKHLILRNPV-ILKLEEPAIAPVSQLAHYHILAQEDEKATIL 256
+ Q +L SAT+ ++ L L+NP + + + AP Q ++ + E +K L
Sbjct: 174 EERQTLLFSATMPPNIQKLAQQFLKNPEHVAVISKQVTAPTIQQNYFEV--HERQKFEAL 231
Query: 257 YTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGL 316
LL + + IIF T + +L L++ + L+ +L R + + +F G
Sbjct: 232 CRLLDMESPE-LAIIFGRTKRRVDELSEGLQKRGYTADGLHGDLSQNQRDNVMRKFRDGS 290
Query: 317 YDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHR 376
DV++A+D A RG+D V++VINFD P D + Y+HR
Sbjct: 291 IDVLVATDVAA-----------------------RGLDVSGVTHVINFDLPQDPESYVHR 327
Query: 377 AGRTARGKNQGTALSFVSLREQDLMN 402
GRT R +G+A SFV+ RE D ++
Sbjct: 328 IGRTGRAGKEGSAYSFVTPREVDHLH 353
>gi|367014751|ref|XP_003681875.1| hypothetical protein TDEL_0E04210 [Torulaspora delbrueckii]
gi|359749536|emb|CCE92664.1| hypothetical protein TDEL_0E04210 [Torulaspora delbrueckii]
Length = 740
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 124/423 (29%), Positives = 212/423 (50%), Gaps = 35/423 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ + LG+ P+ IQ IP+ L KD++ A TGSGKT AF IP+I+++ L + A++
Sbjct: 231 LKGLGDLGYTRPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERL--LYKPAKI 288
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQV---DVSVQEPLLVERPDI 146
T+ +VL+P++EL Q + ++ K + V + V ++ QE L RPDI
Sbjct: 289 ASTRVIVLTPTRELAIQ----VSDVAKKLGKYVSGLTFGLAVGGLNLRQQEQSLKARPDI 344
Query: 147 VVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
VVATP R + H++ S+E+++IDEAD + G+++++ +L LP Q +L S
Sbjct: 345 VVATPGRFIDHIRNSASFNVDSVEVLVIDEADRMLEEGFQEELNEILSLLPSKRQTLLFS 404
Query: 207 ATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDE-KATILYTLLKL--N 263
AT++ + L L L+ PV + ++ P A + + + D K ++L+ L+K
Sbjct: 405 ATMNSKIKQLVSLTLKRPVRVMIDPPKQAASKLTQEFVRIRKRDHLKPSVLFHLIKKLDG 464
Query: 264 LVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIAS 323
Q + ++FV + ++L++ L IS L+ L + R +V QF
Sbjct: 465 TGQKRMVVFVARKEMAHRLRIILGLLGISVGELHGSLSQEQRLQSVNQF----------- 513
Query: 324 DEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARG 383
K+LE P + T+ SRG+D + VIN+D P + + Y+HR GRTAR
Sbjct: 514 --KSLEVPILVCTDL----------ASRGLDIPKIEVVINYDMPKNYEVYLHRVGRTARA 561
Query: 384 KNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNL 443
+G ++S V QD +A+ V + V N+ E + ++ + +
Sbjct: 562 GREGRSVSLVGESSQDRSVVRSAIKSVEESSEGQTAAVRNIDWNNVEEINKLVVSMEGTI 621
Query: 444 DEV 446
DE+
Sbjct: 622 DEI 624
>gi|315055611|ref|XP_003177180.1| ATP-dependent rRNA helicase RRP3 [Arthroderma gypseum CBS 118893]
gi|311339026|gb|EFQ98228.1| ATP-dependent rRNA helicase RRP3 [Arthroderma gypseum CBS 118893]
Length = 474
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 125/365 (34%), Positives = 187/365 (51%), Gaps = 35/365 (9%)
Query: 32 AIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQE 91
A LG+ PT IQ +IPL LQ +D++ A TGSGKT AFA+P++Q ++ + Q
Sbjct: 63 ACTSLGYKAPTPIQAESIPLALQGRDLVGLAETGSGKTAAFALPILQALME-----KPQP 117
Query: 92 TKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATP 151
LVL+P++EL Q+ ++ + L S V+C I +D+ Q L ++P I+VATP
Sbjct: 118 YFGLVLAPTRELAVQISESFEALGSLIS--VRCAVIVGGMDMISQSISLGKKPHIIVATP 175
Query: 152 ARALAHLK-AKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLS 210
R L HL+ K L+ +L+ +++DEAD + + + +LK LP+ + L SATLS
Sbjct: 176 GRLLDHLENTKGFSLR-NLKYLVMDEADRLLDLDFGPVLDKILKVLPRERRTYLFSATLS 234
Query: 211 EDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGK-T 269
V SL+ L NP+ + + VS L +I K +Y + LN G+ T
Sbjct: 235 SKVESLQRASLSNPLRVSISSNKYQTVSTLLQSYIFIPHKYKD--IYLVHILNEFPGQTT 292
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
IIF TV++ +L + L L+ +L AR A+ +F G D+++A+D A
Sbjct: 293 IIFTRTVNETQRLSILLRALGFGAIPLHGQLSQSARLGALGKFRSGSRDILVATDVAA-- 350
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
RG+D V V+NFD P D + YIHR GRTAR G A
Sbjct: 351 ---------------------RGLDIPAVDLVLNFDLPSDSKTYIHRVGRTARAGKSGRA 389
Query: 390 LSFVS 394
+S V+
Sbjct: 390 ISVVT 394
>gi|444920089|ref|ZP_21239933.1| ATP-independent RNA helicase dbpA [Wohlfahrtiimonas chitiniclastica
SH04]
gi|444508956|gb|ELV09124.1| ATP-independent RNA helicase dbpA [Wohlfahrtiimonas chitiniclastica
SH04]
Length = 461
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 126/386 (32%), Positives = 196/386 (50%), Gaps = 46/386 (11%)
Query: 16 YFELPFTFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIP 75
+ ELP L L+ + LG+ T IQ A+P IL+ KD+L +A+TGSGKT AF I
Sbjct: 3 FSELP----LPAAQLKNLQDLGYQSTTPIQAAALPAILKGKDLLGQAKTGSGKTAAFGIG 58
Query: 76 MIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELT-----MKCSRDVKCVDISEQ 130
+++ I ++ + A T+ALV+ P++EL +Q+ K ++ L +K S I+ Q
Sbjct: 59 VLESI-DVTRFA----TQALVICPTRELADQVSKELRRLARYIPNLKISSICGGTPIARQ 113
Query: 131 VDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMK 190
+ Q P P I V TP R L HLK TL LKS L+++++DEAD + G+ D+M
Sbjct: 114 IHAMSQHP-----PHIAVGTPGRLLDHLKRNTLSLKS-LKVLVLDEADRMLDMGFADEMD 167
Query: 191 AVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEE-PAIAPVSQLAHYHILAQE 249
A+++ P+ Q +L SAT E++ ++ I NPV + +EE PA P + ++
Sbjct: 168 AIIEHAPRQRQTLLFSATFPENIEAISARIQHNPVRVTVEETPADKP--NIDQSVVIVDN 225
Query: 250 DEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAV 309
L + T+IF NT+ C +L+ YL + I L+ +L + R +
Sbjct: 226 QGAKAATTAALLYHYAPESTVIFCNTIAACQELEDYLFEQDIDVVSLHGDLEQRERDQVL 285
Query: 310 YQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLD 369
+F+ G V++A+D A RG+D +S VIN+D P D
Sbjct: 286 LRFSNGSTRVLVATDVAA-----------------------RGLDIADLSMVINYDLPFD 322
Query: 370 IQCYIHRAGRTARGKNQGTALSFVSL 395
+ Y+HR GRT R G A+S V +
Sbjct: 323 PEVYVHRIGRTGRAGKTGIAVSLVVM 348
>gi|406595506|ref|YP_006746636.1| ATP-dependent RNA helicase [Alteromonas macleodii ATCC 27126]
gi|407682465|ref|YP_006797639.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'English
Channel 673']
gi|406372827|gb|AFS36082.1| ATP-dependent RNA helicase [Alteromonas macleodii ATCC 27126]
gi|407244076|gb|AFT73262.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'English
Channel 673']
Length = 596
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 122/384 (31%), Positives = 198/384 (51%), Gaps = 35/384 (9%)
Query: 21 FTFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMI 77
TF +P LQA+ K+G+ +P+ IQ +IPL+L+ D+L +A+TG+GKT AFA+PM+
Sbjct: 7 MTFKDLNLPEPILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAAFALPML 66
Query: 78 QKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQE 137
I ++ Q+ LVL+P++EL Q+ + Q + S+ +K + + Q
Sbjct: 67 ANIDPEERKPQL-----LVLAPTRELAIQVAEAFQ-VYASFSQKIKVLPVYGGQSYDNQI 120
Query: 138 PLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLP 197
L +VV TP R + H+K KTLDL S L+ +++DEAD + G+ DD++ +L P
Sbjct: 121 RQLKRGVQVVVGTPGRIIDHIKRKTLDL-SELKFLVLDEADEMLRMGFIDDVELILSHAP 179
Query: 198 KLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILY 257
+ Q L SAT+ + + L++P +K+ ++ S + + K L
Sbjct: 180 EERQTALFSATMPGPIKKITQRYLKDPKHVKIAS-KVSTASTIRQRYCQIAPHHKLEALT 238
Query: 258 TLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLY 317
++++ + G IIFV T +L L LN ++P AR V + QG
Sbjct: 239 RIMEVEVFDG-MIIFVRTKTATVELADKLSARGYDVEPLNGDIPQAARERTVEKLKQGKI 297
Query: 318 DVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRA 377
D+++A+D V+RG+D + VS+VIN+D P D + Y+HR
Sbjct: 298 DILVATDV-----------------------VARGLDVERVSHVINYDIPYDSESYVHRI 334
Query: 378 GRTARGKNQGTALSFVSLREQDLM 401
GRT R QG A+ F+S RE+ L+
Sbjct: 335 GRTGRAGRQGDAILFISHREKRLL 358
>gi|390953372|ref|YP_006417130.1| DNA/RNA helicase [Aequorivita sublithincola DSM 14238]
gi|390419358|gb|AFL80115.1| DNA/RNA helicase, superfamily II [Aequorivita sublithincola DSM
14238]
Length = 423
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 124/374 (33%), Positives = 194/374 (51%), Gaps = 29/374 (7%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQAI+K G+ P+ IQ++AIPLIL+ KDVL A+TGSGKT FA+PM+Q I+N + +
Sbjct: 13 LQAISKKGYETPSAIQKKAIPLILERKDVLASAQTGSGKTAGFALPMLQ-ILNSEPAFRK 71
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ +AL+L+P++EL Q+ +E + D++ I V + Q L DI+VA
Sbjct: 72 RPVRALILTPTRELAAQVEDEFREYSEFT--DLRSTVIFGGVGANPQIKALRNGVDILVA 129
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L L L S +EI+++DEAD + G+ D+K +L LP Q +L SAT
Sbjct: 130 TPGRLLDLENQNALSL-SKVEILVLDEADRMLDMGFLRDIKKILALLPNKRQNLLFSATF 188
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
S+++ L + L +PV+++ P V ++ + +K ++ L+ Q +
Sbjct: 189 SKEIKKLANEFLHHPVLVE-ATPENTTVEKIDQTVYRVDKAQKTDLIIKLISEGNWQ-QV 246
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
++F T +L LE+ KI++ ++ AR A+ F +G V++A+D A
Sbjct: 247 LVFTRTKHGANRLSEKLEKAKITSAAIHGNKSQGARTRALSGFKEGKVRVLVATDIAA-- 304
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
RG+D + +VINF+ P + Y+HR GRT R G A
Sbjct: 305 ---------------------RGLDIPLLPHVINFELPNISEDYVHRIGRTGRAGASGEA 343
Query: 390 LSFVSLREQDLMND 403
LS VSL E + D
Sbjct: 344 LSLVSLDEVGYLKD 357
>gi|121606092|ref|YP_983421.1| DEAD/DEAH box helicase [Polaromonas naphthalenivorans CJ2]
gi|120595061|gb|ABM38500.1| DEAD/DEAH box helicase domain protein [Polaromonas
naphthalenivorans CJ2]
Length = 487
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 116/376 (30%), Positives = 201/376 (53%), Gaps = 31/376 (8%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII---NLKQTA 87
+A+A++G+ T IQE+AIP++LQ KDV+ A+TG+GKT AFA+P++Q+++ N +
Sbjct: 16 RAVAEMGYETMTPIQEQAIPVVLQGKDVMGAAQTGTGKTAAFALPLLQRMMKHENASTSP 75
Query: 88 QVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
+ALVL P++EL Q+ + ++ L K + ++ + +D+ Q L + +++
Sbjct: 76 ARHPVRALVLLPTRELAVQVAEQVK-LYAKYT-NLNSAVVFGGMDMKPQTLELKKGVEVL 133
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
VATP R L H++AK L + +E V++DEAD + G+ D++ +L +LPK +L SA
Sbjct: 134 VATPGRLLDHIEAKNTVL-NQVEYVVLDEADRMLDIGFLPDLQRILSYLPKQRITLLFSA 192
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
T S ++ L L++PV +++ + H++ + +D++ + L +L Q
Sbjct: 193 TFSPEIKRLAASFLQDPVTIEVARSNATAATVEQHFYSVGADDKRRALHQILKARDLKQ- 251
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
+FVN+ C +L LE+ + T L+ + R A+ F G D+++ +D A
Sbjct: 252 -AFVFVNSKLGCARLARSLEREGLKTTALHGDKSQDERLKALESFKSGEVDLLVCTDVAA 310
Query: 328 LETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQG 387
RG+D + V V NFD P + + Y+HR GRT R G
Sbjct: 311 -----------------------RGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASG 347
Query: 388 TALSFVSLREQDLMND 403
A+SFV+ +Q L+ D
Sbjct: 348 LAVSFVAASDQRLVTD 363
>gi|311071129|ref|YP_003976052.1| ATP-dependent RNA helicase; cold shock [Bacillus atrophaeus 1942]
gi|419823024|ref|ZP_14346587.1| ATP-dependent RNA helicase [Bacillus atrophaeus C89]
gi|310871646|gb|ADP35121.1| ATP-dependent RNA helicase; cold shock [Bacillus atrophaeus 1942]
gi|388472831|gb|EIM09591.1| ATP-dependent RNA helicase [Bacillus atrophaeus C89]
Length = 497
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 120/403 (29%), Positives = 213/403 (52%), Gaps = 46/403 (11%)
Query: 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIIN 82
F L ++AI +LG+ E T IQ IPL LQ+KDV+ +A+TG+GKT AF IP+++KI
Sbjct: 8 FQLSSDLMKAINRLGFEEATPIQAETIPLGLQHKDVIGQAQTGTGKTAAFGIPLVEKI-- 65
Query: 83 LKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVE 142
+ +A+V++P++EL Q+ + + ++ + K + I D+ Q L +
Sbjct: 66 ---NPESPNIQAIVIAPTRELAIQVSEELYKIGQ--DKRAKVLPIYGGQDIGRQIRALKK 120
Query: 143 RPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQA 202
P I+V TP R L H+ +TL L +++ V++DEAD + + G+ +D++++L +P +Q
Sbjct: 121 NPHIIVGTPGRLLDHINRRTLRL-NNVNTVVMDEADEMLNMGFIEDIESILSNVPSEHQT 179
Query: 203 ILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLL-- 260
+L SAT+ + + + NP +K++ + VS + +++ E +K L LL
Sbjct: 180 LLFSATMPAPIKRIAERFMTNPEHVKVKAKEMT-VSNIQQFYLEVHERKKFDTLTRLLDI 238
Query: 261 ---KLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLY 317
+L +V G+T V+ + + L+ Y + ++ +L R A+ +F QG
Sbjct: 239 QSPELAIVFGRTKRRVDELSEALNLRGYTAEG------IHGDLTQAKRMVALRKFKQGAI 292
Query: 318 DVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRA 377
+V++A+D A RG+D V++V NFD P D + Y+HR
Sbjct: 293 EVLVATDVAA-----------------------RGLDISGVTHVYNFDVPQDPESYVHRI 329
Query: 378 GRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMND 420
GRT R G A++F++ RE+D++ A+ + R+ D M +
Sbjct: 330 GRTGRAGKTGMAMTFITPREKDMLR---AIEQTTKRKMDRMKE 369
>gi|281209095|gb|EFA83270.1| putative RNA helicase [Polysphondylium pallidum PN500]
Length = 1070
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 129/374 (34%), Positives = 197/374 (52%), Gaps = 39/374 (10%)
Query: 24 TLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINL 83
TLF +AI + G+ PT IQ + IPLIL DV+ ARTGSGKT AF +PMIQK L
Sbjct: 267 TLF----KAIVRKGFKVPTPIQRKTIPLILAGSDVVAMARTGSGKTAAFVVPMIQK---L 319
Query: 84 KQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVER 143
+ + +A++LSP++EL Q +K +++ T + V + ++ E L
Sbjct: 320 GEHSIKVGARAIILSPTRELAIQTYKVVKDFTYGSNLRSCLVVGGDSMEDQFAE--LARN 377
Query: 144 PDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAI 203
PDI+VATP R + HL+ + L S+++ ++ DEAD +F G++ + ++ L Q +
Sbjct: 378 PDIIVATPGRLVHHLQEVGMGL-STVQYIVFDEADRLFEMGFQQQLNDIVSKLSDNRQTL 436
Query: 204 LASATLSEDVLSLKHLILRNPVILKLE-EPAIAPVSQLAHYHILAQEDEKATILYTLLKL 262
L SATL ++ L NP++++L+ E I+ L+ Y I + DEK +L LLK
Sbjct: 437 LFSATLPSMLVDFVRAGLTNPILVRLDSETKISENLALSFYTI--RHDEKLAVLLYLLK- 493
Query: 263 NLVQGK--TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVI 320
+++ K TIIF T L+++L+Q KI + +++ L AR + +F V+
Sbjct: 494 EVIEDKQPTIIFTATKYHVEYLQIFLKQAKIDSTIIHGYLDPVARKINLAKFRSNNVSVM 553
Query: 321 IASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRT 380
I +D A RGID + NVINFDFP + ++HR GR
Sbjct: 554 IVTDIAA-----------------------RGIDIPLLDNVINFDFPPKEKIFVHRVGRV 590
Query: 381 ARGKNQGTALSFVS 394
AR +GTA S VS
Sbjct: 591 ARAGRKGTAYSLVS 604
>gi|430811708|emb|CCJ30841.1| unnamed protein product [Pneumocystis jirovecii]
Length = 610
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 114/381 (29%), Positives = 202/381 (53%), Gaps = 30/381 (7%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+ +G+ +PT IQ +AIP+ L KD++ A TGSGKT AF IP+++++ L + ++
Sbjct: 183 LKALESIGFDKPTTIQSKAIPIALLGKDIVGSAVTGSGKTAAFVIPVLERL--LYRPKKI 240
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T+ L+L P++EL Q + ++L D+K + + + +QE L +RPDIV+A
Sbjct: 241 AVTRVLILCPTRELAIQCYNVTKKLATYT--DIKTCICTGGLSLKIQEAELRKRPDIVIA 298
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + H++ +S+EI++IDEAD + G++D++ ++K PK Q IL SAT+
Sbjct: 299 TPGRFIDHVRNSYGFSPNSIEIIVIDEADRILDEGFQDELNEIIKICPKSRQTILFSATM 358
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAH--YHILAQEDEKATILYTLLKLNLVQG 267
++ V L L L PV L +P + V L I + ++ T + L ++ +
Sbjct: 359 TDKVDQLIRLSLNKPVRL-FVDPKNSTVKSLIQEFIRIRSHKEHLRTAILLYLCSDVFKT 417
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
KTIIF ++ +K+++ ++ L+ L + R ++ F +G + ++A+D
Sbjct: 418 KTIIFFDSKSFAHKIRIIFGLLHLNARELHGNLSQEQRIESLELFRRGRTNFLLATDL-- 475
Query: 328 LETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQG 387
SRG+D + V +IN++ P Y+HR GRTARG G
Sbjct: 476 ---------------------ASRGLDIKGVKYIINYEAPSSFNIYLHRIGRTARGGCDG 514
Query: 388 TALSFVSLREQDLMNDGTALS 408
A++ + ++ +M T ++
Sbjct: 515 VAVTLIGEGDRRIMKMATKIA 535
>gi|376260079|ref|YP_005146799.1| DNA/RNA helicase [Clostridium sp. BNL1100]
gi|373944073|gb|AEY64994.1| DNA/RNA helicase, superfamily II [Clostridium sp. BNL1100]
Length = 564
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 119/402 (29%), Positives = 213/402 (52%), Gaps = 36/402 (8%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ 90
+AI +G+ E T IQ ++IP IL+ D++ +A+TG+GKT AF IP ++KI Q+
Sbjct: 17 RAIVDMGFEEATPIQSQSIPYILEGNDLIGQAQTGTGKTCAFGIPAVEKI-----DPQID 71
Query: 91 ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVAT 150
+ LVL P++EL Q + ++ + +K ++ + + + Q L +RP I++ T
Sbjct: 72 SIQVLVLCPTRELAIQSCEELRNV-LKYKDGIRILPVYGGQPIDRQIMALKKRPQIIIGT 130
Query: 151 PARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLS 210
P R + H++ +TL L+ +L+++++DEAD + + G+ +D+ +L+ +P+ Q IL SAT+
Sbjct: 131 PGRVMDHMRRRTLKLE-ALKMIVLDEADEMLNMGFREDIDTILEKVPEDRQTILFSATMP 189
Query: 211 EDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTI 270
+++L L ++PV +K+ + V + Y++ +E K +L L+ N ++ ++
Sbjct: 190 KEILELTKKYQKDPVHIKIAHKELT-VPSIEQYYLEVKESAKLEVLSRLIDTNDIK-LSL 247
Query: 271 IFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALET 330
+F NT + +L L+ S L+ ++ + R + F +G +D++IA+D A
Sbjct: 248 VFCNTKKRVDELTASLQSRGFSAEALHGDMRQEHRDKVMSLFRKGNFDILIATDVAA--- 304
Query: 331 PQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTAL 390
RGID V V N+D P D + Y+HR GRT R G A
Sbjct: 305 --------------------RGIDVDDVEAVFNYDLPNDEEYYVHRIGRTGRAGRTGKAF 344
Query: 391 SFVSLREQDLMND---GTALSFVSLREQDLMNDVNEYLMTNL 429
+F+S RE + D T + V ++ L N+V E M N+
Sbjct: 345 TFISGREMYKLRDIQRYTKSTIVPMKPPSL-NEVEEKKMLNI 385
>gi|78486348|ref|YP_392273.1| DEAD/DEAH box helicase [Thiomicrospira crunogena XCL-2]
gi|78364634|gb|ABB42599.1| DEAD/DEAH box helicase [Thiomicrospira crunogena XCL-2]
Length = 574
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 123/385 (31%), Positives = 204/385 (52%), Gaps = 33/385 (8%)
Query: 18 ELPFTFTLFCIP-LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPM 76
E+ F+ P L+ + ++G+ P+ IQE+AIP++L+ D+L A+TG+GKT AFA+P+
Sbjct: 4 EIKFSDLGLSAPILKTLEEIGYETPSPIQEQAIPVLLKGGDILGMAQTGTGKTAAFALPI 63
Query: 77 IQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQ 136
+ KI +LKQ ++ + LVL+P++EL Q+ + Q + + + + + I + Q
Sbjct: 64 LSKI-DLKQ----KDPQVLVLAPTRELAIQVAEAFQTFS-RGVKGLHVLPIYGGSEYGTQ 117
Query: 137 EPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFL 196
L +VV TP R + H+K TL L +L+++I+DEAD + G+ DD++ +LK
Sbjct: 118 IRALKRGVHVVVGTPGRVMDHIKKGTLKL-DTLKVMILDEADEMLRMGFIDDVEWILKHT 176
Query: 197 PKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATIL 256
P Q L SAT+ ++V + + L++P + +++ A A S + + L K L
Sbjct: 177 PDTRQIALFSATMPKEVHRIANTYLQDPTEVIIKQKA-ATASLIEQKYWLVSGLHKLDAL 235
Query: 257 YTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGL 316
+L+ G IIFV T +L LE + LN ++ R V Q +G
Sbjct: 236 TRILEAETFDG-IIIFVRTKTATVELAEKLEARGYAAAALNGDVAQNQRERTVDQLKKGK 294
Query: 317 YDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHR 376
D++IA+D V+RG+D + +S+VIN+D P D + Y+HR
Sbjct: 295 LDILIATDV-----------------------VARGLDVERISHVINYDIPYDNESYVHR 331
Query: 377 AGRTARGKNQGTALSFVSLREQDLM 401
GRT R GTA+ FV+ RE+ L+
Sbjct: 332 IGRTGRAGRSGTAILFVAPRERRLL 356
>gi|372488022|ref|YP_005027587.1| DNA/RNA helicase [Dechlorosoma suillum PS]
gi|359354575|gb|AEV25746.1| DNA/RNA helicase, superfamily II [Dechlorosoma suillum PS]
Length = 641
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 119/373 (31%), Positives = 192/373 (51%), Gaps = 31/373 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+ +G+ P+ IQ IPL+++ KD+L A+TG+GKT AFA+P++QK+ ++ Q
Sbjct: 18 LQALTDVGYETPSSIQAECIPLLMEGKDLLGMAQTGTGKTAAFALPLLQKLDVTQRFPQ- 76
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
ALVL+P++EL Q+ + Q+ K + I + +Q L +++
Sbjct: 77 ----ALVLAPTRELAIQVAEACQKYA-KHLPGFHVLPIYGGQSLGIQLKQLQRGAHVIIG 131
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + HL+ K+LDL S L+ +++DEAD + G+ DD++ +L+ +P Q L SAT+
Sbjct: 132 TPGRVMDHLERKSLDL-SRLKTLVLDEADEMLRMGFIDDVEWILEHIPAERQTALFSATM 190
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + + LR+P +K++ A + VS + + K L ++++
Sbjct: 191 PEQIRRVAQKYLRDPQEVKIKS-ATSTVSAIQQRYWQVSGLHKLDALTRIMEVEDSLDAA 249
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
IIFV T +L LE + LN ++ +R + Q G D++IA+D A
Sbjct: 250 IIFVRTKTATEELAQKLEARGYAAAALNGDMNQASRERVIEQLKSGGLDIVIATDVAA-- 307
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
RGID VS+VIN+D P D++ Y+HR GRT R GTA
Sbjct: 308 ---------------------RGIDVPRVSHVINYDIPYDVEAYVHRIGRTGRAGRTGTA 346
Query: 390 LSFVSLREQDLMN 402
+ FVS RE ++
Sbjct: 347 ILFVSPREMRMLR 359
>gi|334340716|ref|YP_004545696.1| DEAD/DEAH box helicase [Desulfotomaculum ruminis DSM 2154]
gi|334092070|gb|AEG60410.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum ruminis DSM
2154]
Length = 482
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 118/387 (30%), Positives = 208/387 (53%), Gaps = 47/387 (12%)
Query: 16 YFELPFTFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIP 75
++EL + +L LQA+A +G+ E T IQE+ IP+ LQ +D++ +A TG+GKT AF +P
Sbjct: 4 FYELGLSESL----LQALANMGFEEATPIQEKTIPVALQQRDLIGQAHTGTGKTAAFGVP 59
Query: 76 MIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSV 135
M++K + + LV++P++EL Q+ + + + + ++ + I D++
Sbjct: 60 MVEKF-----EEEADRVQGLVITPTRELAVQVAEELNRIGQ--IKGIRTLPIYGGQDINR 112
Query: 136 QEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKF 195
Q L +RP I+V TP R + H+ +TL L+ +++V++DEAD + + G+ +D++A+L+
Sbjct: 113 QIKALKKRPHIIVGTPGRLMDHMDRRTLRLQ-GIKMVVLDEADEMLNMGFIEDIEAILQE 171
Query: 196 LPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATI 255
+P+ Q++L SAT+ + + L L++P + ++ + V + +I QE EK
Sbjct: 172 IPEERQSLLFSATMPKPIQVLAQRFLKDPEFISIKAKEVT-VPSIDQSYIEVQEREKFEA 230
Query: 256 LYTLL-----KLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVY 310
L LL +L +V G+T VD+ Y+ L + S ++ +L R +
Sbjct: 231 LCRLLDTQSPELAIVFGRT---KRRVDELYE---ALNKRGYSAEGIHGDLSQSKRDSVLR 284
Query: 311 QFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDI 370
QF + DV++A+D A RG+D V++V NFD P D
Sbjct: 285 QFKEATIDVLVATDVAA-----------------------RGLDISGVTHVYNFDIPQDP 321
Query: 371 QCYIHRAGRTARGKNQGTALSFVSLRE 397
+ Y+HR GRT R +G A++FV+ RE
Sbjct: 322 EGYVHRIGRTGRAGKKGEAITFVTPRE 348
>gi|342218233|ref|ZP_08710855.1| DEAD-box ATP-dependent RNA helicase CshA [Megasphaera sp. UPII
135-E]
gi|341590668|gb|EGS33904.1| DEAD-box ATP-dependent RNA helicase CshA [Megasphaera sp. UPII
135-E]
Length = 515
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 115/368 (31%), Positives = 193/368 (52%), Gaps = 31/368 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+ +G+ EPT IQ AIP+ LQ +D++ +A+TG+GKT AF IP+++KI+ +T+ V
Sbjct: 15 LQALNTMGFEEPTPIQAEAIPVALQGQDMIGQAQTGTGKTAAFGIPVLEKILASSKTSNV 74
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
Q +VLSP++EL Q+ + + L S ++ + I D+ Q L + P I+VA
Sbjct: 75 Q---TIVLSPTRELAMQVAEELNHLAQYTS--IQALPIYGGQDMERQLRRLRKHPQIIVA 129
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + H+K T+ L + +++DEAD + G+ DD+ ++ P+ Q +L SAT+
Sbjct: 130 TPGRLIDHMKRGTIHL-DEISTIVLDEADEMLDMGFIDDIHTIMSATPETRQTLLFSATM 188
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+ L L++P I++++ + + + +I + +K +L LL L
Sbjct: 189 PAPIQKLAQTFLKDPQIIRMKAKEVT-MDLIEQSYIETPDRQKFDVLCRLLDLQ-EPDLA 246
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
IIFV T + +L L++ S+ ++ +L R + QF + D+++A+D A
Sbjct: 247 IIFVRTKRRVDELSEALKKRGYSSEGIHGDLTQAKRDSVIRQFREKTIDILVATDVAA-- 304
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
RG+D V++V N+D P D + Y+HR GRT R G A
Sbjct: 305 ---------------------RGLDISGVTHVFNYDLPQDPESYVHRVGRTGRAGKTGEA 343
Query: 390 LSFVSLRE 397
+FV RE
Sbjct: 344 TTFVIPRE 351
>gi|33240544|ref|NP_875486.1| superfamily II DNA/RNA helicase [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
gi|33238072|gb|AAQ00139.1| Superfamily II DNA/RNA helicase [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
Length = 603
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 117/375 (31%), Positives = 200/375 (53%), Gaps = 34/375 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ + G+ EPT IQ+ +IP ++ +D+L +A+TG+GKT AFA+P++++I + ++ QV
Sbjct: 63 LKTLKNKGYEEPTPIQKASIPELMLGRDLLGQAQTGTGKTAAFALPLLERINSKERNPQV 122
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
LVL+P++EL Q+ ++ + + + ++ + + D Q L +I+V
Sbjct: 123 -----LVLTPTRELAMQVAESFKAYS-EGHANINILAVYGGSDFRSQIYSLKRGVEIIVG 176
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + H++ TL+ + SL+ +++DEAD + G+ DD++ +L+ LP Q +L SAT+
Sbjct: 177 TPGRVMDHIRQGTLN-QDSLQCLVLDEADEMLRMGFIDDIEWILEQLPNERQMVLFSATM 235
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYH-ILAQEDEKATILYTLLKLNLVQGK 268
++ L LR+P + ++ A +QL H I Q K +L +L+LN +G
Sbjct: 236 PPEIRKLSKRYLRDPAEITIK--AKKKEAQLIRQHYITVQNSYKLEVLRRVLELNYGEG- 292
Query: 269 TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL 328
IIF T KL LE + VLN ++P R V + QG ++++A+D A
Sbjct: 293 VIIFARTKAITLKLAESLEASNHNVAVLNGDVPQNLRERTVERLRQGGINILVATDVAA- 351
Query: 329 ETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGT 388
RG+D + + VIN+D P D + Y+HR GRT R G
Sbjct: 352 ----------------------RGLDVERIGLVINYDMPFDSEAYVHRIGRTGRAGRSGE 389
Query: 389 ALSFVSLREQDLMND 403
A+ F+S RE+ +N+
Sbjct: 390 AILFISPRERSYLNN 404
>gi|366986679|ref|XP_003673106.1| hypothetical protein NCAS_0A01550 [Naumovozyma castellii CBS 4309]
gi|342298969|emb|CCC66713.1| hypothetical protein NCAS_0A01550 [Naumovozyma castellii CBS 4309]
Length = 748
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 117/372 (31%), Positives = 200/372 (53%), Gaps = 37/372 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ +A LG+ +P+ IQ IP+ L KD++ A TGSGKT AF IP+I+++ L ++A++
Sbjct: 238 LKGLATLGYTKPSPIQSATIPVALSGKDIIAGAVTGSGKTAAFMIPVIERL--LFKSAKI 295
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQV---DVSVQEPLLVERPDI 146
T+ +VL+P++EL Q I ++ K + + + V ++ QE L RPDI
Sbjct: 296 AATRVIVLTPTRELAIQ----ISDVGKKIGKFINGITFGLAVGGLNLRQQEQELKARPDI 351
Query: 147 VVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
V+ATP R + H++ S+EI++IDEAD + G+++++ +++ LP Q +L S
Sbjct: 352 VIATPGRFIDHIRNSASFNVDSVEILVIDEADRMLEEGFQEELNEIMQLLPNKRQTLLFS 411
Query: 207 ATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAH--YHILAQEDEKATILYTLLKL-- 262
AT++ + L L LR PV + ++ P A S+L I A++ K +L+ L+K
Sbjct: 412 ATMNSKIKQLVSLSLRKPVRIMIDPPKQA-ASRLTQEFVRIRARDHLKPALLFNLIKKLD 470
Query: 263 NLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIA 322
Q + ++FV+ + ++L++ L ++ L+ L + R +V +F
Sbjct: 471 GYGQKRMVVFVSRKEMAHRLRIILGLLGMNVAELHGSLSQEQRLESVTKF---------- 520
Query: 323 SDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTAR 382
K+LE P + T+ SRG+D + VIN+D P + Y+HR GRTAR
Sbjct: 521 ---KSLEIPVLICTDL----------ASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTAR 567
Query: 383 GKNQGTALSFVS 394
+G ++SFV
Sbjct: 568 AGREGRSVSFVG 579
>gi|407980113|ref|ZP_11160911.1| ATP-dependent RNA helicase [Bacillus sp. HYC-10]
gi|407413167|gb|EKF34895.1| ATP-dependent RNA helicase [Bacillus sp. HYC-10]
Length = 496
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 120/410 (29%), Positives = 217/410 (52%), Gaps = 49/410 (11%)
Query: 19 LPFTFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIP 75
+ TF F + ++AI ++G+ E T IQ IPL LQNKDV+ +A+TG+GKT AF IP
Sbjct: 1 MTITFQDFQLSESLMKAINRMGFEEATPIQAETIPLGLQNKDVIGQAQTGTGKTAAFGIP 60
Query: 76 MIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSV 135
+++KI Q A++++P++EL Q+ + + ++ + + + I D+
Sbjct: 61 LVEKIDPASPNIQ-----AIIIAPTRELAIQVSEELYKIGQ--DKRARVLPIYGGQDIGR 113
Query: 136 QEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKF 195
Q L + P I+V TP R L H+ +T+ L+ ++E V++DEAD + + G+ +D++++L
Sbjct: 114 QIRSLKKNPHIIVGTPGRLLDHINRRTMRLQ-NVETVVLDEADEMLNMGFIEDIESILSN 172
Query: 196 LPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATI 255
+P +Q +L SAT+ + + + NP +K++ + VS + +++ E +K
Sbjct: 173 VPSEHQTLLFSATMPAPIKRIAERFMTNPEHVKVKAKEMT-VSNIQQFYLDIHERKKFDT 231
Query: 256 LYTLL-----KLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVY 310
L LL +L++V G+T V+ + + L+ Y + ++ +L R A+
Sbjct: 232 LTRLLDIQSPELSIVFGRTKRRVDELTEALNLRGYTAEG------IHGDLTQAKRMVALR 285
Query: 311 QFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDI 370
+F +G DV++A+D A RG+D V++V NFD P D
Sbjct: 286 KFKEGSIDVLVATDVAA-----------------------RGLDISGVTHVYNFDVPQDP 322
Query: 371 QCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMND 420
+ Y+HR GRT R G A++F++ RE+D++ A+ + R+ D M +
Sbjct: 323 ESYVHRIGRTGRAGRTGMAMTFITPREKDMLR---AIEQTTKRKMDRMKE 369
>gi|407698821|ref|YP_006823608.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Black Sea
11']
gi|407247968|gb|AFT77153.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Black Sea
11']
Length = 608
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 122/384 (31%), Positives = 198/384 (51%), Gaps = 35/384 (9%)
Query: 21 FTFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMI 77
TF +P LQA+ K+G+ +P+ IQ +IPL+L+ D+L +A+TG+GKT AFA+PM+
Sbjct: 7 MTFKDLNLPEPILQALEKVGYEKPSPIQAESIPLLLKGHDLLGQAQTGTGKTAAFALPML 66
Query: 78 QKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQE 137
I ++ Q+ LVL+P++EL Q+ + Q + S+ +K + + Q
Sbjct: 67 ANIDPEQRKPQL-----LVLAPTRELAIQVAEAFQ-VYASFSQKIKVLPVYGGQSYDNQI 120
Query: 138 PLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLP 197
L +VV TP R + H+K KTLDL S L+ +++DEAD + G+ DD++ +L P
Sbjct: 121 RQLKRGVQVVVGTPGRIIDHIKRKTLDL-SELKFLVLDEADEMLRMGFIDDVELILSHAP 179
Query: 198 KLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILY 257
+ Q L SAT+ + + L++P +K+ ++ S + + K L
Sbjct: 180 EERQTALFSATMPGPIKKITQRYLKDPKHVKIAS-KVSTASTIRQRYCQIAPHHKLEALT 238
Query: 258 TLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLY 317
++++ + G IIFV T +L L LN ++P AR V + QG
Sbjct: 239 RIMEVEVFDG-MIIFVRTKTATVELADKLSARGYDVEPLNGDIPQAARERTVEKLKQGKI 297
Query: 318 DVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRA 377
D+++A+D V+RG+D + VS+VIN+D P D + Y+HR
Sbjct: 298 DILVATDV-----------------------VARGLDVERVSHVINYDIPYDSESYVHRI 334
Query: 378 GRTARGKNQGTALSFVSLREQDLM 401
GRT R QG A+ F+S RE+ L+
Sbjct: 335 GRTGRAGRQGDAILFISHREKRLL 358
>gi|390944989|ref|YP_006408750.1| DNA/RNA helicase [Belliella baltica DSM 15883]
gi|390418417|gb|AFL85995.1| DNA/RNA helicase, superfamily II [Belliella baltica DSM 15883]
Length = 591
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 128/428 (29%), Positives = 219/428 (51%), Gaps = 58/428 (13%)
Query: 17 FELPFTFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFA 73
E TF+ I L+A+ +G+ +P+ IQ ++IPL+L +DV+ +A+TG+GKT +F
Sbjct: 1 MEQELTFSDLGISSEILKAVEDMGYTQPSTIQSQSIPLLLDGRDVIGQAQTGTGKTASFG 60
Query: 74 IPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVK--CVDISEQV 131
IP+I ++ + + +AL+L P++EL Q+ I +L+ K R + C+ E +
Sbjct: 61 IPIIDQV-----DPTINKPQALILCPTRELAVQVEGEIVKLS-KYKRGISSTCIYGGESI 114
Query: 132 DVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKA 191
D ++ L IVV TP R + H++ +TL+L S + I+++DEAD + G+ DD++
Sbjct: 115 DRQIKS--LKRGVQIVVGTPGRIMDHMQRRTLNL-SQISIIVLDEADEMLDMGFRDDIET 171
Query: 192 VLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKL--EEPAIAPVSQLAHYHILAQE 249
+L +P+ Q + SAT+ + +L L NP I+K+ +E + +SQ A+Y + +
Sbjct: 172 ILSSMPEERQTVFFSATMPKPILDLTRKYQNNPEIVKVLRKELTVENISQ-AYYEV--RP 228
Query: 250 DEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAV 309
+ ++ L++LN + +++F NT ++ L I L+ +L R +
Sbjct: 229 SLRIELMVRLMELNQFK-LSVVFCNTKRSTDEVTESLISKGIMAEALHGDLSQAQRTKVM 287
Query: 310 YQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLD 369
+F +G V++A+D A RGID V V N+D PLD
Sbjct: 288 NKFRKGTCSVLVATDVAA-----------------------RGIDVDDVEAVFNYDLPLD 324
Query: 370 IQCYIHRAGRTARGKNQGTALSFVSLRE-----QDL----------MNDGTALSFVSLRE 414
+ Y+HR GRT R G ALSFV+ R+ +DL M+ + V L++
Sbjct: 325 EENYVHRIGRTGRAGKSGMALSFVTGRKDTYRLRDLEKFIKTTIHKMDPPSVTDLVELKK 384
Query: 415 QDLMNDVN 422
L+ DVN
Sbjct: 385 ASLVKDVN 392
>gi|253573302|ref|ZP_04850645.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
oral taxon 786 str. D14]
gi|251846830|gb|EES74835.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
oral taxon 786 str. D14]
Length = 518
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 123/383 (32%), Positives = 202/383 (52%), Gaps = 40/383 (10%)
Query: 22 TFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQ 78
TF F + LQAI +LG+ E T IQ ++IP+ L +D++ +A+TG+GKT AF +P+I
Sbjct: 3 TFADFGLEPKVLQAITELGFEEATPIQAKSIPIALSGRDLIGQAQTGTGKTAAFGLPLIN 62
Query: 79 KIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELT-MKCSRDVKCVDISEQVDVSVQE 137
KI + ALV++P++EL Q+ + I +L+ K +R + I D+ Q
Sbjct: 63 KI-----PKEEDRIVALVMTPTRELAIQVAEEIGKLSRFKGTR---SLPIYGGQDIVRQI 114
Query: 138 PLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLP 197
L ++P I++ TP R L H+ KT+ L ++ V++DEAD + G+ DD++++LK +P
Sbjct: 115 RALKKKPQIIIGTPGRLLDHINRKTIKL-DDVKTVVLDEADEMLDMGFMDDIQSILKLVP 173
Query: 198 KLYQAILASATLSEDVLSLKHLILRNPV-ILKLEEPAIAPVSQLAHYHILAQEDEKATIL 256
+ Q +L SAT+ ++ L L+NP + + + AP+ A+ + E +K L
Sbjct: 174 EDRQTMLFSATMPANIQKLAQQFLKNPEHVSVIPKQVSAPLIDQAYIEV--HERQKFDAL 231
Query: 257 YTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGL 316
LL + + I+F T + +L L++ S L+ +L R + + +F G
Sbjct: 232 TRLLDMESPE-LAIVFGRTKRRVDELSEALQKQGYSADGLHGDLSQNQRDNVMRKFRDGS 290
Query: 317 YDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHR 376
DV++A+D A RG+D V++V+NFD P D + Y+HR
Sbjct: 291 IDVLVATDVAA-----------------------RGLDVSGVTHVVNFDLPQDPESYVHR 327
Query: 377 AGRTARGKNQGTALSFVSLREQD 399
GRT R +G A SFV+ RE D
Sbjct: 328 IGRTGRAGKEGVAWSFVTPREMD 350
>gi|225181200|ref|ZP_03734646.1| DEAD/DEAH box helicase domain protein [Dethiobacter alkaliphilus
AHT 1]
gi|225168169|gb|EEG76974.1| DEAD/DEAH box helicase domain protein [Dethiobacter alkaliphilus
AHT 1]
Length = 470
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 112/368 (30%), Positives = 194/368 (52%), Gaps = 33/368 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA++ +G+ E T IQE+AIP L+ D++ +A TG+GKT AF +PM++K+ T Q
Sbjct: 14 LQAVSNMGFEEATPIQEQAIPTALKGLDLIGQAHTGTGKTAAFGVPMVEKLEKNGSTVQ- 72
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
ALV++P++EL Q+ + + ++ + ++ + + D+ Q L +RP I+V
Sbjct: 73 ----ALVVTPTRELAVQVAEELNKIGQ--YKGIRTLPVYGGQDIGRQIRGLQKRPQIIVG 126
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H++ +T+ L + +V++DEAD + + G+ +D++A+L+ P+ Q +L SAT+
Sbjct: 127 TPGRLLDHIRRRTVRL-GQVSMVVLDEADEMLNMGFIEDIEAILQETPQERQTLLFSATM 185
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+ L +R+P + + + V +H++ +E +K +L LL
Sbjct: 186 PGPIEQLARRFMRDPQKISVRSKEVT-VPNTEQFHMVMEERQKFDVLCRLLDTQSPD-LA 243
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L L + S ++ ++ R + QF G D+++A+D A
Sbjct: 244 IVFGRTKRRVDELYEALNKRGYSAEGIHGDMTQARRDSVMRQFKDGSIDILVATDVAA-- 301
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
RG+D V++V NFD P D + Y+HR GRT R N G A
Sbjct: 302 ---------------------RGLDITGVTHVYNFDIPQDPESYVHRIGRTGRAGNTGMA 340
Query: 390 LSFVSLRE 397
++FVS RE
Sbjct: 341 VTFVSNRE 348
>gi|335040306|ref|ZP_08533437.1| DEAD/DEAH box helicase domain protein [Caldalkalibacillus thermarum
TA2.A1]
gi|334179782|gb|EGL82416.1| DEAD/DEAH box helicase domain protein [Caldalkalibacillus thermarum
TA2.A1]
Length = 457
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 122/374 (32%), Positives = 199/374 (53%), Gaps = 43/374 (11%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ 90
+A+AK+G+ E T IQ AIPL L+ +D++ +A+TG+GKT AF IPMI+ I A
Sbjct: 15 RALAKMGFEEATPIQAEAIPLALKGQDLIGQAQTGTGKTAAFGIPMIEGI-----QAHAN 69
Query: 91 ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVAT 150
+ LV++P++EL Q+ + + + + VK + + D++ Q L + P ++V T
Sbjct: 70 HIQGLVITPTRELTIQVAEELNRIGE--FKKVKVLPVYGGQDINRQIKALKQYPQVIVGT 127
Query: 151 PARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLS 210
P R L HL+ KTL L + + V++DEAD + + G+ DD+ A+L+ P+ Q +L SAT+
Sbjct: 128 PGRLLDHLRRKTLRL-AHIRHVVLDEADEMLNMGFIDDITAILEQCPQEKQTLLFSATMP 186
Query: 211 EDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLL-----KLNLV 265
E + L ++NP +K++ + V + Y++ QE +K IL LL +L +V
Sbjct: 187 EPIKELALRFMQNPAEVKIKVKQVT-VPLIEQYYLEVQEKQKFDILCRLLDLESPELAIV 245
Query: 266 QGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE 325
G+T V+ + + K + YL + ++ +L R + F G D+++A+D
Sbjct: 246 FGRTKRRVDELSEALKRRGYLAEG------IHGDLSQARRDQVINLFRTGSIDILVATDV 299
Query: 326 KALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKN 385
A RG+D Q V++V NFD P D + Y+HR GRT R
Sbjct: 300 AA-----------------------RGLDIQGVTHVCNFDIPQDPENYVHRIGRTGRAGQ 336
Query: 386 QGTALSFVSLREQD 399
G A++FV RE D
Sbjct: 337 TGKAITFVVPRELD 350
>gi|157691224|ref|YP_001485686.1| ATP-dependent RNA helicase [Bacillus pumilus SAFR-032]
gi|157679982|gb|ABV61126.1| ATP-dependent RNA helicase [Bacillus pumilus SAFR-032]
Length = 513
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 121/410 (29%), Positives = 217/410 (52%), Gaps = 49/410 (11%)
Query: 19 LPFTFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIP 75
L TF F + ++AI ++G+ E T IQ IPL LQNKDV+ +A+TG+GKT AF IP
Sbjct: 18 LTITFQDFQLSESLMKAINRMGFEEATPIQAETIPLGLQNKDVIGQAQTGTGKTAAFGIP 77
Query: 76 MIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSV 135
+++KI Q A++++P++EL Q+ + + ++ + + + I D+
Sbjct: 78 LVEKIDPASPNIQ-----AIIIAPTRELAIQVSEELYKIGQ--DKRARVLPIYGGQDIGR 130
Query: 136 QEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKF 195
Q L + P I+V TP R L H+ +T+ L+ ++E V++DEAD + + G+ +D++++L
Sbjct: 131 QIRSLKKNPHIIVGTPGRLLDHINRRTMRLQ-NVETVVLDEADEMLNMGFIEDIESILSN 189
Query: 196 LPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATI 255
+P +Q +L SAT+ + + + NP +K++ + VS + +++ E +K
Sbjct: 190 VPSEHQTLLFSATMPAPIKRIAERFMTNPEHVKVKAKEMT-VSNIQQFYLDIHERKKFDT 248
Query: 256 LYTLL-----KLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVY 310
L LL +L++V G+T V+ + + L+ Y + ++ +L R A+
Sbjct: 249 LTRLLDIQSPELSIVFGRTKRRVDELTEALNLRGYTAEG------IHGDLTQAKRMVALR 302
Query: 311 QFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDI 370
+F +G DV++A+D A RG+D V++V NFD P D
Sbjct: 303 KFKEGSIDVLVATDVAA-----------------------RGLDISGVTHVYNFDVPQDP 339
Query: 371 QCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMND 420
+ Y+HR GRT R G A++F++ RE+D++ A+ + R+ D M +
Sbjct: 340 ESYVHRIGRTGRAGRTGMAMTFITPREKDMLR---AIEQTTKRKMDRMKE 386
>gi|403223027|dbj|BAM41158.1| DEAD-box family RNA helicase [Theileria orientalis strain Shintoku]
Length = 571
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 129/426 (30%), Positives = 221/426 (51%), Gaps = 46/426 (10%)
Query: 42 TLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSK 101
T +Q +AIP+IL +D L++++TGSGKT A IP++ ++ + + K L++ PS
Sbjct: 55 TPVQRKAIPVILSGRDALIKSQTGSGKTLAALIPLLNLLLENSRPPSPADLKLLIVVPSN 114
Query: 102 ELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAK 161
+L Q+H +++ L KCS + ++E D ++VV P+ A+ +K++
Sbjct: 115 DLIRQVHSSLKTLLKKCSNTLTFGAVAESKDALA---------NVVVTKPSVAVEIVKSQ 165
Query: 162 TLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLP-----KLYQAILASATLSEDVLSL 216
LE +++DEADL+F FGY+ DM +++ L K +QA+L SATL ++ ++
Sbjct: 166 ------ELEYLVVDEADLLFEFGYKKDMLKLIELLRSTSKFKKFQAVLLSATLDYEIKNI 219
Query: 217 KHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTIIFVNTV 276
+L+L PV + + P + + Y+IL +E K LY LLK+ + +IIFVN+
Sbjct: 220 ANLLLYKPVYVDV--PFTQKLGTVNEYYILVEEKNKLVTLYVLLKMESIPYGSIIFVNSN 277
Query: 277 DKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINST 336
K Y L +L + + +++ L K R + FNQGL +I D++
Sbjct: 278 KKGYHLYCFLRKLSLDINIVSKLLSPKLRHTILQNFNQGLIGCLIVIDDET--------- 328
Query: 337 NNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLR 396
D++ +SRG+DF + VINFD P ++ Y HR GRT R +G++L+F + R
Sbjct: 329 -------DQDMNLSRGVDFVNLKCVINFDEPKSLEIYKHRIGRTGRNYQEGSSLTFFTKR 381
Query: 397 EQDLMNDGTALSFVSLREQDLMND--VNEYLMTNLHEDD-FIIKPYQFNLDEVKGFEYRA 453
+ DL+ L E++ + +NE + H DD +K + + F+YR
Sbjct: 382 DDDLL-----LKLTKGFEENSAHSLQLNEQVEGQEHGDDEGGLKRLTLDESVFESFKYRV 436
Query: 454 KDAWRS 459
D ++
Sbjct: 437 NDILKT 442
>gi|441477761|dbj|BAM75193.1| vasa-like gene-2, partial [Pinctada fucata]
Length = 451
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 119/394 (30%), Positives = 199/394 (50%), Gaps = 39/394 (9%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ 90
+A +L W P+ IQ AIP+ LQ D++ A TGSGKTGAFAIP++QK+++ Q
Sbjct: 35 EACERLKWKSPSKIQREAIPVALQGSDIIGLAETGSGKTGAFAIPILQKLLD-----SPQ 89
Query: 91 ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVAT 150
AL+L+P++EL Q+ + + L + VKC + +D+ Q +L ++P I++AT
Sbjct: 90 RLYALILTPTRELAFQISEQFEAL--GSAIGVKCAVVVGGIDMMSQSLMLAKKPHIIIAT 147
Query: 151 PARALAHLK-AKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
P R + HL+ K +L+ +L+ +++DEAD + + +E ++ +LK +P+ L SAT+
Sbjct: 148 PGRLIDHLENTKGFNLR-ALKFLVMDEADRILNMDFEQEVDKILKVIPRERSTYLYSATM 206
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
++ V L+ L+NPV +++ V +L Y++ K L ++L L
Sbjct: 207 TKKVAKLQRASLQNPVKVEVSSK-YQTVDKLQQYYLFVPAKFKDVYLVSVLN-ELAGNSF 264
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
++F +T + L L ++ L+ ++ R ++ +F ++IA+D
Sbjct: 265 MVFTSTCANTQRTALMLRNLGLTAIPLHGQMSQSKRLGSLNKFKSKSRSILIATDV---- 320
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D V VINFD P + YIHR GRTAR G A
Sbjct: 321 -------------------ASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKA 361
Query: 390 LSFVSLREQDLMND-----GTALSFVSLREQDLM 418
++FVS + +L G L EQ++M
Sbjct: 362 ITFVSQYDVELYQRIEHLIGKKLPLYKTEEQEVM 395
>gi|226313946|ref|YP_002773842.1| ATP-dependent RNA helicase [Brevibacillus brevis NBRC 100599]
gi|226096896|dbj|BAH45338.1| putative ATP-dependent RNA helicase [Brevibacillus brevis NBRC
100599]
Length = 493
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 117/374 (31%), Positives = 196/374 (52%), Gaps = 37/374 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
+Q I L + EPT IQE AIPLI++ KD++ +A+TG+GKT AF +P++ + K+ Q
Sbjct: 15 MQGIQDLYYKEPTQIQEEAIPLIMEGKDLIGQAQTGTGKTAAFMLPILNALDEGKRDIQ- 73
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
AL+L+P++EL Q+ K +++L +V + + D+ Q L E IVV
Sbjct: 74 ----ALILTPTRELSIQIAKEVEKLGKHL--NVNVLSLHGGTDIDKQLSKLKETVQIVVG 127
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H+K +L + +++DEAD + G+ +D++ V+ P Q +L SAT+
Sbjct: 128 TPGRVLDHMKRGSLHF-GRISTLVLDEADKMMEMGFLEDVEQVIVHTPSQRQVLLFSATM 186
Query: 210 SEDVLSLKHLILRNPVILKLE--EPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
+ V L H ++ P +K+E + + + Q Y+++ Q D+ ++ L +
Sbjct: 187 PDLVKKLAHRFMKQPPHIKIEGKQKTVERIEQF--YYVVNQSDKTDALVDVLEQEQPFL- 243
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
TI+F NT + +L L++ +S L +L R + QF + + +IA+D A
Sbjct: 244 -TIVFANTQVRVQQLTARLQENGLSAKALYGDLSQNKREQLMKQFREIRFQFLIATDIAA 302
Query: 328 LETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQG 387
RG+D + V++VIN+D P D+ YIHR GRT R +G
Sbjct: 303 -----------------------RGLDVEGVTHVINYDLPNDVDSYIHRVGRTGRAGQKG 339
Query: 388 TALSFVSLREQDLM 401
A+S +S R+++LM
Sbjct: 340 KAISLISPRQKNLM 353
>gi|381395029|ref|ZP_09920736.1| ATP-dependent RNA helicase RhlE [Glaciecola punicea DSM 14233 =
ACAM 611]
gi|379329307|dbj|GAB55869.1| ATP-dependent RNA helicase RhlE [Glaciecola punicea DSM 14233 =
ACAM 611]
Length = 399
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 118/374 (31%), Positives = 190/374 (50%), Gaps = 28/374 (7%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
+ A+ G+ PT IQE+AIP +L KDV+ A+TG+GKT AF +P+IQ+ +
Sbjct: 13 VSAVTDKGYTTPTPIQEQAIPAVLSGKDVMAAAQTGTGKTAAFTLPLIQRFATNYSEPRP 72
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
KALVL+P++EL Q+ NI E K + ++ + V ++ Q L DI+VA
Sbjct: 73 NHIKALVLTPTRELAAQVAANIDE--YKVNTPIRSTVVFGGVSINPQMKHLRRGCDILVA 130
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L + + S + ++++DEAD + G+ D+K +LK LP+ Q +L SAT
Sbjct: 131 TPGRLLDLFQQNAVKF-SDVSVLVLDEADRMLDMGFIHDIKRILKLLPQKRQNLLFSATF 189
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
SED+ L ++ NPV + + P A + H + ++ K+ +L L++ N Q +
Sbjct: 190 SEDIRGLASRLVNNPVEISV-TPNNAAAPSVEHSIVYLEKANKSKLLIHLIESNGWQ-QA 247
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
++F T +L L +IS ++ AR A+ F G +++A+D A
Sbjct: 248 LVFTRTKHGANRLTKQLCSHEISAAAIHGNKSQGARTKALASFKNGELRILVATDIAA-- 305
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
RGID Q + NV+N+D P + Y+HR GRT R + G A
Sbjct: 306 ---------------------RGIDIQQLPNVVNYDLPNVPEDYVHRIGRTGRAGSVGQA 344
Query: 390 LSFVSLREQDLMND 403
+SFV+ + ++D
Sbjct: 345 VSFVTAEDFKQLSD 358
>gi|163750900|ref|ZP_02158133.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
benthica KT99]
gi|161329324|gb|EDQ00321.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
benthica KT99]
Length = 492
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 121/391 (30%), Positives = 197/391 (50%), Gaps = 38/391 (9%)
Query: 18 ELPFTFTLFCIP-LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPM 76
+ FT P L+A+A G+ PT IQ +AIP +L+ KDV+ A+TG+GKT F +P+
Sbjct: 13 SMSFTSLGLSAPILKAVANKGYETPTPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPL 72
Query: 77 IQKIINLKQTAQVQETKALVLSPSKELCNQLHKNI----QELTMKCSRDVKCVDISEQVD 132
++ +++ AQ ++ +ALVL+P++EL Q+ +++ + L +K + V I Q+
Sbjct: 73 LE-LLSRGNRAQAKKVRALVLTPTRELAAQVAESVDTYGKYLPLKSAVVFGGVGIGPQIS 131
Query: 133 VSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAV 192
L + DI+VATP R L ++ + LE++++DEAD + G+ D+K +
Sbjct: 132 ------KLGKGVDILVATPGRLLDLYNQGAVNF-NQLEVLVLDEADRMLDMGFIHDIKKI 184
Query: 193 LKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEK 252
L+ LP Q ++ SAT S+D+ L ++ NPV + + P A + Y + + +K
Sbjct: 185 LRALPAKRQNLMFSATFSDDIRKLAKGLVNNPVEISV-TPRNATAKSVEQYIYMVDQKQK 243
Query: 253 ATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQF 312
L L+K N Q + ++F T ++ LE I+ ++ AR A+ F
Sbjct: 244 TAALIHLIKQNDWQ-QVLVFSRTKHGANRIAKNLEAKDITAAAIHGNKSQGARTKALANF 302
Query: 313 NQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQC 372
GL V++A+D A RGID + NV+NFD P +
Sbjct: 303 KSGLVRVLVATDIAA-----------------------RGIDIDQLPNVVNFDLPNVPED 339
Query: 373 YIHRAGRTARGKNQGTALSFVSLREQDLMND 403
Y+HR GRT R G A+S VS E L+ D
Sbjct: 340 YVHRIGRTGRAGASGQAVSLVSADESKLLRD 370
>gi|386813381|ref|ZP_10100605.1| DEAD/DEAH box helicase [planctomycete KSU-1]
gi|386402878|dbj|GAB63486.1| DEAD/DEAH box helicase [planctomycete KSU-1]
Length = 441
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 108/363 (29%), Positives = 187/363 (51%), Gaps = 33/363 (9%)
Query: 32 AIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQE 91
+ LG++ PT IQ +AIP ILQ +D++ A+TG+GKT AF +P++Q+++ +
Sbjct: 15 GVRALGYITPTPIQLQAIPFILQGQDIMALAQTGTGKTAAFVLPILQRLMQGPRGC---- 70
Query: 92 TKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATP 151
+AL+++P++EL Q+H+ I L + ++ V + V++ Q L + +I V+ P
Sbjct: 71 VRALIIAPTRELAEQIHEAIGGLGQQTR--LRSVTVYGGVNMRPQVQKLRGKAEIAVSCP 128
Query: 152 ARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSE 211
R L H++ T+DL S LE++++DEAD +F G+ D++ +LK LP Q + SAT+ +
Sbjct: 129 GRLLDHIRQGTIDL-SRLEVLVLDEADRMFDMGFLPDIRKILKHLPAQRQTLFFSATMPD 187
Query: 212 DVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTII 271
D+ L H IL P +++ PV+ ++H ++ K +L LL ++ ++
Sbjct: 188 DIRRLAHDILHTPATVQVNH--TMPVTTISHALYPVEQHLKTPLLMALLNHTDME-SVLV 244
Query: 272 FVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETP 331
F T + ++ L + S+ L L R A+ F G + +++A+D A
Sbjct: 245 FTRTKHRAKQVAHQLGRAGYSSTSLQGNLSQSQRQAALNGFRNGSFKILVATDIAA---- 300
Query: 332 QINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALS 391
RGID +S+VIN+D P Y HR GRT R G A +
Sbjct: 301 -------------------RGIDVSRISHVINYDMPDTSDAYTHRIGRTGRAAKTGDAFT 341
Query: 392 FVS 394
++
Sbjct: 342 LIT 344
>gi|354557827|ref|ZP_08977084.1| DEAD/DEAH box helicase domain protein [Desulfitobacterium
metallireducens DSM 15288]
gi|353549501|gb|EHC18942.1| DEAD/DEAH box helicase domain protein [Desulfitobacterium
metallireducens DSM 15288]
Length = 497
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 109/368 (29%), Positives = 201/368 (54%), Gaps = 33/368 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L ++ +G+ E T IQE+ IP L+ KD++ +A+TG+GKT AF IP+++KI A
Sbjct: 14 LHSVENMGFEEATPIQEQTIPKALEGKDLIGQAQTGTGKTAAFGIPLVEKI-----EAGA 68
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
++ + +VLSP++EL Q+ + + ++ + ++ + I ++ Q L +RP I+VA
Sbjct: 69 EQLQGIVLSPTRELAVQVAEELNKIGQ--FKGIQTLPIYGGQEIDRQIRALKKRPQIIVA 126
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + H++ KT+ L S ++IV++DEAD + + G+ +D+ +L+ +P+ Q +L SAT+
Sbjct: 127 TPGRLMDHMRRKTIRL-SEIKIVVLDEADEMLNMGFVEDIHTILQEVPENRQTLLFSATM 185
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+ +L ++ P ++ ++ + V+ + +++ QE +K +L LL + +
Sbjct: 186 PRSIQNLAQRFMKEPELISVKAKEVT-VANIEQHYLEVQEKQKFDVLCRLLDMQSPE-LA 243
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L L + S ++ +L R + QF +G ++++A+D A
Sbjct: 244 IVFGRTKRRVDELAEGLNKRGYSAEGIHGDLTQSKRDSVLRQFKEGTIEILVATDVAA-- 301
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
RG+D V++V NFD P D + Y+HR GRT R G A
Sbjct: 302 ---------------------RGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGLA 340
Query: 390 LSFVSLRE 397
++FV+ RE
Sbjct: 341 VTFVTPRE 348
>gi|399036700|ref|ZP_10733664.1| DNA/RNA helicase, superfamily II [Rhizobium sp. CF122]
gi|398065527|gb|EJL57148.1| DNA/RNA helicase, superfamily II [Rhizobium sp. CF122]
Length = 569
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 118/384 (30%), Positives = 193/384 (50%), Gaps = 35/384 (9%)
Query: 20 PFTFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQK 79
P TLF +LG PT IQE+AIPL+L+ +D++ A+TG+GKT AF +P+I+K
Sbjct: 12 PIVATLF--------QLGIETPTPIQEKAIPLLLEGRDLIGLAQTGTGKTAAFGLPLIEK 63
Query: 80 IINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL 139
+I ++ + T+ L+L+P++EL NQ+ N++ K + V V ++ Q+
Sbjct: 64 LIPEERRPDNRTTRTLILAPTRELVNQIATNLKNFLRKSHLRINVV--VGGVSINKQQLQ 121
Query: 140 LVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199
L + DI+VATP R L + + + L +++ +++DEAD + G+ D++ + K +PK
Sbjct: 122 LEKGTDILVATPGRLLDLVNRRAIGL-TAVRYLVLDEADQMLDLGFVHDLRKIAKMVPKK 180
Query: 200 YQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTL 259
Q +L SAT+ + + L L NPV +++ P A + H + +++K +L
Sbjct: 181 RQTMLFSATMPKSIADLAGEYLTNPVTVEVTPPGKAADKVEQYVHFVNGKNDKTDLLKKS 240
Query: 260 LKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDV 319
L N G+ I+F+ T KL +L+ S ++ R A+ F G
Sbjct: 241 LTEN-PDGRAIVFLRTKHGAEKLMKHLDHVGYSVASIHGNKSQGQRERALKAFRDGDIKT 299
Query: 320 IIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGR 379
+IA+D A RGID VS+V N+D P Y+HR GR
Sbjct: 300 LIATDVAA-----------------------RGIDIPAVSHVYNYDLPEVPDAYVHRIGR 336
Query: 380 TARGKNQGTALSFVSLREQDLMND 403
TAR G A++F + E L+ D
Sbjct: 337 TARAGRDGVAIAFCAPDETRLLRD 360
>gi|302875685|ref|YP_003844318.1| DEAD/DEAH box helicase [Clostridium cellulovorans 743B]
gi|307689114|ref|ZP_07631560.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
cellulovorans 743B]
gi|302578542|gb|ADL52554.1| DEAD/DEAH box helicase domain protein [Clostridium cellulovorans
743B]
Length = 472
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 117/372 (31%), Positives = 201/372 (54%), Gaps = 33/372 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + + PT +QE+ IPL L D++V+A+TGSGKT AFAIP+I+ +I A
Sbjct: 14 LKSLKLMNFDVPTEVQEKVIPLALSGDDIIVKAQTGSGKTAAFAIPIIENLI-----ANE 68
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ALVL+P++EL Q+ + T+ + +K V + + +S+Q+ L +R IVV
Sbjct: 69 NAVQALVLTPTRELAVQVQETFS--TLGVYKKIKTVAVYGKQPMSIQKNQLSQRVHIVVG 126
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H++ LD+ SS++ +IIDEAD + + G+ D+++ ++K +PKL Q ++ SATL
Sbjct: 127 TPGRTLDHIEKGNLDI-SSVKYLIIDEADEMLNMGFIDEVENIIKKVPKLRQTLMFSATL 185
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
S ++ L + + +P +++L P V+++ + E+ K +L L+K + K
Sbjct: 186 SYEIKELINKYMFSPKLIEL-TPETLTVAKINQKYYEIDENLKYNLLEDLIKTEDIT-KA 243
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T L + S ++ ++ R A+ F + + I+A+D A
Sbjct: 244 ILFCRTKKNVAYLASRMRVSSYSVTEIHGDMLQNDRLSALKAFKEDKFQFIVATDVAA-- 301
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
RGID VS+V N+D PL+++ Y+HR GRT R + G A
Sbjct: 302 ---------------------RGIDVNNVSHVFNYDIPLELEAYVHRIGRTGRAGSSGEA 340
Query: 390 LSFVSLREQDLM 401
++FV+ E +
Sbjct: 341 ITFVTRYEDKFL 352
>gi|88705999|ref|ZP_01103707.1| ATP-dependent RNA helicase RhlE [Congregibacter litoralis KT71]
gi|88699713|gb|EAQ96824.1| ATP-dependent RNA helicase RhlE [Congregibacter litoralis KT71]
Length = 443
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 205/393 (52%), Gaps = 43/393 (10%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+ K G+ + T IQ++AIPL+L+ D+L A+TG+GKT F +PM+Q++ N
Sbjct: 13 LRAVEKQGYDKATPIQQKAIPLVLEGSDLLAGAQTGTGKTAGFTLPMLQRLQNKYPGTAK 72
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
KALVL+P++EL Q+H+++++ K I V ++ Q+ L++ D+VVA
Sbjct: 73 SYPKALVLTPTRELAAQVHESVRDYGAYLP--FKSAVIFGGVSINPQKQKLIKGVDVVVA 130
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H++ +++DL S +EI+++DEAD + G+ D++ V+K +PK Q +L SAT
Sbjct: 131 TPGRLLDHVQQRSIDL-SKIEILVLDEADRMLDMGFIHDIRRVMKVIPKQRQTLLFSATF 189
Query: 210 SEDVLSLKHLILRNPVILKL--EEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
S ++ L L NP +++ + A VSQ + ++ E LL + +G
Sbjct: 190 SNEIKKLASEFLENPQQIQVTPQNTATKLVSQRVYPVDKGRKRE-------LLSQQIGEG 242
Query: 268 ---KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
+ +IF T +L L + IS+ ++ AR A+ +F G ++A+D
Sbjct: 243 NWQQVLIFTRTKHGANRLAEQLSKDGISSAAIHGNKSQGARTRALAEFKSGAIRALVATD 302
Query: 325 EKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384
A RGID + +V+N++ P + YIHR GRTAR
Sbjct: 303 IAA-----------------------RGIDIDKLPHVVNYELPNVAEDYIHRIGRTARAG 339
Query: 385 NQGTALSFVSLREQDLMND-----GTALSFVSL 412
+G A+S V + E L+ D G+A+ V L
Sbjct: 340 QEGHAISLVCVDELKLLRDIEKLLGSAIEKVYL 372
>gi|120600329|ref|YP_964903.1| DEAD/DEAH box helicase [Shewanella sp. W3-18-1]
gi|146291742|ref|YP_001182166.1| DEAD/DEAH box helicase [Shewanella putrefaciens CN-32]
gi|120560422|gb|ABM26349.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
gi|145563432|gb|ABP74367.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
CN-32]
Length = 640
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 115/372 (30%), Positives = 197/372 (52%), Gaps = 33/372 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+ +LG+ +PT IQ +I ++ KD+L +A+TG+GKTGAFA+P++ K+ + + T Q+
Sbjct: 18 LRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNKVTS-QTTPQI 76
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
LVL+P++EL Q+ + K ++ + I + Q L P ++V
Sbjct: 77 -----LVLAPTRELAVQVAEAFSSYA-KFMKNFHVLPIYGGQSMQQQLNALKRGPQVIVG 130
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + H++ TL L SL+ +++DEAD + G+ DD++ +L+ P Q L SAT+
Sbjct: 131 TPGRVMDHMRRGTLKL-DSLKALVLDEADEMLKMGFIDDIEWILEHTPSERQLALFSATM 189
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + + + LR+PV +++E V + + + K L +L++ +G
Sbjct: 190 PEQIKRVANQHLRSPVHVRIESSQTT-VESIEQRFVQVSQHNKLEALVRVLEVENTEG-V 247
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
IIFV T + C +L LE ++ L+ ++ +AR AV Q +G D++IA+D A
Sbjct: 248 IIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILIATDVAA-- 305
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
RG+D + + +V+N+D P D + Y+HR GRT R G A
Sbjct: 306 ---------------------RGLDVERIGHVVNYDIPYDAEAYVHRIGRTGRAGRTGMA 344
Query: 390 LSFVSLREQDLM 401
+ FV+ RE ++
Sbjct: 345 ILFVTSREMRML 356
>gi|336312904|ref|ZP_08567849.1| cold-shock DEAD-box protein A [Shewanella sp. HN-41]
gi|335863516|gb|EGM68660.1| cold-shock DEAD-box protein A [Shewanella sp. HN-41]
Length = 631
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 115/372 (30%), Positives = 197/372 (52%), Gaps = 33/372 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+ +LG+ +PT IQ +I ++ KD+L +A+TG+GKTGAFA+P++ K+ + + T Q+
Sbjct: 18 LRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNKVTS-QTTPQI 76
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
LVL+P++EL Q+ + K ++ + I + Q L P ++V
Sbjct: 77 -----LVLAPTRELAVQVAEAFSSYA-KFMKNFHVLPIYGGQSMQQQLNALKRGPQVIVG 130
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + H++ TL L SL+ +++DEAD + G+ DD++ +L+ P Q L SAT+
Sbjct: 131 TPGRVMDHMRRGTLKL-DSLKALVLDEADEMLKMGFIDDIEWILEHTPSERQLALFSATM 189
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + + + LR+PV +++E V + + + K L +L++ +G
Sbjct: 190 PEQIKRVANQHLRSPVHVRIESSQTT-VESIEQRFVQVSQHNKLEALVRVLEVENTEG-I 247
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
IIFV T + C +L LE ++ L+ ++ +AR AV Q +G D++IA+D A
Sbjct: 248 IIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKRGKLDILIATDVAA-- 305
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
RG+D + + +V+N+D P D + Y+HR GRT R G A
Sbjct: 306 ---------------------RGLDVERIGHVVNYDIPYDAEAYVHRIGRTGRAGRTGMA 344
Query: 390 LSFVSLREQDLM 401
+ FV+ RE ++
Sbjct: 345 ILFVTSREMRML 356
>gi|254480404|ref|ZP_05093651.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
HTCC2148]
gi|214038987|gb|EEB79647.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
HTCC2148]
Length = 429
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 122/395 (30%), Positives = 213/395 (53%), Gaps = 37/395 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+ G+ E T IQ++AIPL+L+ KDVL A+TG+GKT F +P++Q++ + Q
Sbjct: 13 LRAVETQGYDEATPIQQQAIPLVLKGKDVLAGAQTGTGKTAGFTLPVLQRLQSSHAEGQK 72
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ + LVL+P++EL Q+H+++++ + I V ++ Q+ L++ D+VVA
Sbjct: 73 RHPRVLVLTPTRELAAQVHESVRDYGRFLP--FRSAVIFGGVSINPQKQKLIKGVDVVVA 130
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HL+ +++DL S +E++++DEAD + G+ D++ VL +PK Q +L SAT
Sbjct: 131 TPGRLLDHLQQRSIDL-SKVEVLVLDEADRMLDMGFIRDIRKVLNAIPKKRQTLLFSATF 189
Query: 210 SEDVLSLKHLILRNPVILKL--EEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
S+++ SL L P +++ + A VSQ+ + + ++ ++ + + + N Q
Sbjct: 190 SKEIKSLAAEFLHQPTEIQVTPQNTAAELVSQIVYP--VDKKRKRELLSQKIGEENWQQ- 246
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
++F T KL L + I++ ++ AR A+ F QG V++A+D A
Sbjct: 247 -VLVFTRTKHGANKLSEQLGKDGITSAAIHGNKSQGARTKALANFKQGSVRVLVATDIAA 305
Query: 328 LETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQG 387
RGID + +V+NF+ P + Y+HR GRTAR +G
Sbjct: 306 -----------------------RGIDIDKLPHVVNFELPNVAEDYVHRIGRTARAGQEG 342
Query: 388 TALSFVSLREQDLMND-----GTALSFVSLREQDL 417
A+S V + E L++D GT++ V+L D+
Sbjct: 343 HAVSLVCVDELKLLSDIEKLLGTSIEKVNLPGYDV 377
>gi|398815938|ref|ZP_10574597.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. BC25]
gi|398033470|gb|EJL26769.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. BC25]
Length = 496
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 117/375 (31%), Positives = 196/375 (52%), Gaps = 39/375 (10%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
+Q I L + EPT IQE AIPLI++ KD++ +A+TG+GKT AF +P++ + K+ Q
Sbjct: 15 MQGIQDLYYKEPTQIQEEAIPLIMEGKDIIGQAQTGTGKTAAFMLPILNALEEGKRDIQ- 73
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
AL+L+P++EL Q+ K +++L +V + + D+ Q L E +VV
Sbjct: 74 ----ALILTPTRELSIQIAKEVEKLGKHL--NVNVLSLHGGTDIDKQLSKLKETVHVVVG 127
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H+K +L + +++DEAD + G+ +D++ V+ P Q +L SAT+
Sbjct: 128 TPGRVLDHMKRGSLHF-GRISTLVLDEADKMMEMGFLEDVEQVIVHTPSQRQVLLFSATM 186
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGK- 268
+ V L H ++ P +K+E V ++ ++ + + +K L LL+ Q +
Sbjct: 187 PDLVKRLAHRFMKQPPHIKIEGKQ-KTVERIEQFYYVVNQSDKTDALVDLLE----QEQP 241
Query: 269 --TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
TI+F NT + +L L++ +S L +L R + QF + + +IA+D
Sbjct: 242 FLTIVFANTQVRVQQLTARLQENGLSAKALYGDLSQNKREQLMKQFREIRFQYLIATDIA 301
Query: 327 ALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQ 386
A RG+D + V++VIN+D P D+ YIHR GRT R +
Sbjct: 302 A-----------------------RGLDVEGVTHVINYDLPNDVDSYIHRVGRTGRAGQK 338
Query: 387 GTALSFVSLREQDLM 401
G A+S +S R+++LM
Sbjct: 339 GKAISLISPRQKNLM 353
>gi|332140113|ref|YP_004425851.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Deep
ecotype']
gi|327550135|gb|AEA96853.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Deep
ecotype']
Length = 589
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 122/384 (31%), Positives = 198/384 (51%), Gaps = 35/384 (9%)
Query: 21 FTFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMI 77
TF +P LQA+ K+G+ +P+ IQ +IPL+L+ D+L +A+TG+GKT AFA+PM+
Sbjct: 7 MTFKDLNLPEPILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAAFALPML 66
Query: 78 QKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQE 137
I ++ Q+ LVL+P++EL Q+ + Q + S+ +K + + Q
Sbjct: 67 ANIDPEQRKPQL-----LVLAPTRELAIQVAEAFQ-VYASFSQKIKVLPVYGGQSYDNQI 120
Query: 138 PLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLP 197
L +VV TP R + H+K KTLDL S L+ +++DEAD + G+ DD++ +L P
Sbjct: 121 RQLKRGVQVVVGTPGRIIDHIKRKTLDL-SELKYLVLDEADEMLRMGFIDDVELILSHAP 179
Query: 198 KLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILY 257
+ Q L SAT+ + + L++P +K+ ++ S + + K L
Sbjct: 180 EERQTALFSATMPGPIKKITQRYLKDPKHVKIAS-KVSTASTIRQRYCQIAPHHKLEALT 238
Query: 258 TLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLY 317
++++ + G IIFV T +L L LN ++P AR V + QG
Sbjct: 239 RIMEVEVFDG-MIIFVRTKTATVELADKLSARGYDVEPLNGDIPQAARERTVEKLKQGKI 297
Query: 318 DVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRA 377
D+++A+D V+RG+D + VS+VIN+D P D + Y+HR
Sbjct: 298 DILVATDV-----------------------VARGLDVERVSHVINYDIPYDSESYVHRI 334
Query: 378 GRTARGKNQGTALSFVSLREQDLM 401
GRT R QG A+ F+S RE+ L+
Sbjct: 335 GRTGRAGRQGDAILFISHREKRLL 358
>gi|398811913|ref|ZP_10570698.1| DNA/RNA helicase, superfamily II [Variovorax sp. CF313]
gi|398079456|gb|EJL70309.1| DNA/RNA helicase, superfamily II [Variovorax sp. CF313]
Length = 487
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 113/378 (29%), Positives = 202/378 (53%), Gaps = 32/378 (8%)
Query: 21 FTFTLFCIPL-QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQK 79
F+ + PL +A+A++G+ T IQE+AIP++L +DV+ A+TG+GKT AF++P++Q+
Sbjct: 5 FSNLMLAEPLARAVAEMGYETMTPIQEQAIPVVLSGQDVMGAAQTGTGKTAAFSLPLLQR 64
Query: 80 II---NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQ 136
++ N + +ALVL P++EL +Q+ + ++ L K + +++ + +D+ Q
Sbjct: 65 MLKHENASTSPARHPVRALVLLPTRELADQVAQQVK-LYAKYT-NLRSTVVFGGIDMKPQ 122
Query: 137 EPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFL 196
L + +++VATP R L H++AK L + +E V++DEAD + G+ D++ +L +L
Sbjct: 123 TLELKKGVEVLVATPGRLLDHIEAKNAVL-NQVEYVVLDEADRMLDIGFLPDLQRILSYL 181
Query: 197 PKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATIL 256
PK +L SAT S ++ L L+NPV +++ P + H++ + +D++ +
Sbjct: 182 PKQRTTLLFSATFSPEIKRLASSYLQNPVTIEVARPNETASTVEQHFYSVGDDDKRRALK 241
Query: 257 YTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGL 316
+ + + Q +FVN+ C +L LE+ + T L+ + R A+ F G
Sbjct: 242 QIVKQRGITQ--AFVFVNSKLGCARLARSLERDGLRTTALHGDKSQDERLKALAAFKAGE 299
Query: 317 YDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHR 376
D+++ +D A RG+D + V V NFD P + + Y+HR
Sbjct: 300 VDLLVCTDVAA-----------------------RGLDIKDVPAVFNFDVPFNAEDYVHR 336
Query: 377 AGRTARGKNQGTALSFVS 394
GRT R G A+SF S
Sbjct: 337 IGRTGRAGASGLAVSFAS 354
>gi|386312353|ref|YP_006008518.1| DEAD/DEAH box helicase [Shewanella putrefaciens 200]
gi|319424978|gb|ADV53052.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
Length = 635
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 115/372 (30%), Positives = 197/372 (52%), Gaps = 33/372 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+ +LG+ +PT IQ +I ++ KD+L +A+TG+GKTGAFA+P++ K+ + + T Q+
Sbjct: 18 LRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNKVTS-QTTPQI 76
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
LVL+P++EL Q+ + K ++ + I + Q L P ++V
Sbjct: 77 -----LVLAPTRELAVQVAEAFSSYA-KFMKNFHVLPIYGGQSMQQQLNALKRGPQVIVG 130
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + H++ TL L SL+ +++DEAD + G+ DD++ +L+ P Q L SAT+
Sbjct: 131 TPGRVMDHMRRGTLKL-DSLKALVLDEADEMLKMGFIDDIEWILEHTPSERQLALFSATM 189
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + + + LR+PV +++E V + + + K L +L++ +G
Sbjct: 190 PEQIKRVANQHLRSPVHVRIESSQTT-VESIEQRFVQVSQHNKLEALVRVLEVENTEG-V 247
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
IIFV T + C +L LE ++ L+ ++ +AR AV Q +G D++IA+D A
Sbjct: 248 IIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILIATDVAA-- 305
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
RG+D + + +V+N+D P D + Y+HR GRT R G A
Sbjct: 306 ---------------------RGLDVERIGHVVNYDIPYDAEAYVHRIGRTGRAGRTGMA 344
Query: 390 LSFVSLREQDLM 401
+ FV+ RE ++
Sbjct: 345 ILFVTSREMRML 356
>gi|326476440|gb|EGE00450.1| ATP-dependent rRNA helicase RRP3 [Trichophyton tonsurans CBS
112818]
gi|326482119|gb|EGE06129.1| ATP-dependent rRNA helicase RRP3 [Trichophyton equinum CBS 127.97]
Length = 474
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 125/365 (34%), Positives = 186/365 (50%), Gaps = 35/365 (9%)
Query: 32 AIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQE 91
A LG+ PT IQ +IPL LQ +D++ A TGSGKT AFA+P++Q ++ + Q
Sbjct: 63 ACTSLGYKNPTPIQAESIPLALQGRDLVGLAETGSGKTAAFALPILQALME-----KPQP 117
Query: 92 TKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATP 151
LVL+P++EL Q+ + + L S V+C I +D+ Q L ++P I+VATP
Sbjct: 118 YFGLVLAPTRELAVQITEAFEALGSLIS--VRCAVIVGGMDMISQSISLGKKPHIIVATP 175
Query: 152 ARALAHLK-AKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLS 210
R L HL+ K L+ +L+ +++DEAD + + + +LK LP+ + L SATLS
Sbjct: 176 GRLLDHLENTKGFSLR-NLKYLVMDEADRLLDLDFGPVLDKILKVLPRERRTYLFSATLS 234
Query: 211 EDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGK-T 269
V SL+ L NP+ + + VS L +I K +Y + LN G+ T
Sbjct: 235 SKVESLQRASLSNPLRVSISSNKYQTVSTLLQSYIFIPHKYKD--IYLVHILNEFPGQTT 292
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
IIF TV++ +L + L L+ +L AR A+ +F G D+++A+D A
Sbjct: 293 IIFTRTVNETQRLSILLRALGFGAIPLHGQLSQSARLGALGKFRSGSRDILVATDVAA-- 350
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
RG+D V V+NFD P D + YIHR GRTAR G A
Sbjct: 351 ---------------------RGLDIPAVDLVLNFDLPSDSKTYIHRVGRTARAGKSGRA 389
Query: 390 LSFVS 394
+S V+
Sbjct: 390 ISVVT 394
>gi|373858038|ref|ZP_09600777.1| DEAD/DEAH box helicase domain protein [Bacillus sp. 1NLA3E]
gi|372452260|gb|EHP25732.1| DEAD/DEAH box helicase domain protein [Bacillus sp. 1NLA3E]
Length = 485
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 111/371 (29%), Positives = 203/371 (54%), Gaps = 37/371 (9%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ 90
+A++++G+ EP+ IQ +AIP+ L KD++ +A+TG+GKT AF +P+I+ +V
Sbjct: 15 KALSQMGFEEPSPIQAQAIPVALSGKDIIGQAQTGTGKTTAFGVPLIE-------NCKVD 67
Query: 91 ET--KALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
E + LVL+P++EL Q+ + + + ++ ++ + I D++ Q L RP I+
Sbjct: 68 EPAIQGLVLAPTRELAVQVAEELNRIG--NTKGIRTLPIYGGQDINRQIRGLKNRPHIIA 125
Query: 149 ATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
ATP R + H+ KT+ L++ + V++DEAD + + G+ +D++ +L +P Q +L SAT
Sbjct: 126 ATPGRLMDHIDRKTIRLQN-IHTVVLDEADEMLNMGFIEDIEKILSGIPSERQTLLFSAT 184
Query: 209 LSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGK 268
+ + +L ++NP ++K++ + V + +++ QE +K +L +LL + +
Sbjct: 185 MPHRIKTLAEKFMKNPELVKVQAKEMT-VGNIEQHYLEVQEKQKFDVLCSLLDIQSPE-L 242
Query: 269 TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL 328
I+F T + +L L + S ++ ++P R + +F + D+++A+D A
Sbjct: 243 AIVFGRTKKRVDELVEGLIKRGYSAEGIHGDIPQTKRDQVIRRFKEQTIDIMVATDVAA- 301
Query: 329 ETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGT 388
RG+D VS+V NFD P D + Y+HR GRT R N+G
Sbjct: 302 ----------------------RGLDISGVSHVYNFDIPQDPESYVHRIGRTGRAGNKGL 339
Query: 389 ALSFVSLREQD 399
A++FVS RE D
Sbjct: 340 AVTFVSPREID 350
>gi|291277508|ref|YP_003517280.1| DEAD box helicase [Helicobacter mustelae 12198]
gi|290964702|emb|CBG40557.1| DEAD box helicase family protein [Helicobacter mustelae 12198]
Length = 513
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 113/365 (30%), Positives = 188/365 (51%), Gaps = 33/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ + G+ PT IQE+AIP ILQ +DV+ +A+TG+GKT AF +P+++ +
Sbjct: 29 LKGVLDAGFRMPTPIQEQAIPAILQERDVIAQAQTGTGKTAAFTLPILEML------HHN 82
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
Q +AL+++P++EL Q+ I +L +++K V + + Q LL + P I+VA
Sbjct: 83 QSIEALIITPTRELTMQVSDEIYKLGR--PKNIKTVCVYGGQSIKRQCELLAKNPQIMVA 140
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK+ LD + V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 141 TPGRLLDHLKSGRLD-NFTPRFVVLDESDEMLDMGFLDDIEEIFNYLPNNIQVLLFSATM 199
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ +K+ A + Y+ + E E+ L +L + K+
Sbjct: 200 PEAIKKLAQRILHNPIHIKITPTANMTNLDVTQYYCVIGEGERQEALMRILDTENIY-KS 258
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
IIF T + L +LE L+ ++ + R A+ F + Y +++A+D
Sbjct: 259 IIFTRTKKEADGLYNFLEARGYKAGTLHGDMEQRDRRAAILDFKKCHYKILVATDV---- 314
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ P + + Y+HR GRT R +G A
Sbjct: 315 -------------------ASRGLDISDVSHVFNYHIPTNSEVYVHRIGRTGRAGKKGKA 355
Query: 390 LSFVS 394
++FV+
Sbjct: 356 ITFVT 360
>gi|304403848|ref|ZP_07385510.1| DEAD/DEAH box helicase domain protein [Paenibacillus
curdlanolyticus YK9]
gi|304346826|gb|EFM12658.1| DEAD/DEAH box helicase domain protein [Paenibacillus
curdlanolyticus YK9]
Length = 546
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 124/387 (32%), Positives = 202/387 (52%), Gaps = 42/387 (10%)
Query: 22 TFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQ 78
TF F + LQAI +LG+ E T IQ ++IP+ L D++ +A+TG+GKT AF IP+I
Sbjct: 3 TFAEFGLEPKVLQAITELGFEEATPIQSKSIPIALTGSDLIGQAQTGTGKTAAFGIPLIN 62
Query: 79 KIINLKQTAQVQETK--ALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQ 136
KI V E + AL+++P++EL Q+ + I +LT + ++ + I ++ Q
Sbjct: 63 KI-------PVTEDRIVALIMTPTRELAIQVAEEIGKLTR--YKGLRSLPIYGGQEIGRQ 113
Query: 137 EPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFL 196
L + P I++ TP R L H+ KT+ L + ++ VI+DEAD + G+ +D+ ++L +
Sbjct: 114 IRALKKHPQIIIGTPGRLLDHINRKTIKL-ADVQTVILDEADEMLDMGFMEDITSILSMV 172
Query: 197 PKLYQAILASATLSEDVLSLKHLILRNPV-ILKLEEPAIAPVSQLAHYHILAQEDEKATI 255
P Q +L SAT+ ++ L L NP + + + AP+ A+ + E +K
Sbjct: 173 PAERQTMLFSATMPPNIQRLAQTFLNNPEHVSVIPKQVSAPLIDQAYIEV--HERQKFEA 230
Query: 256 LYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQG 315
L L+ + + IIF T + +L L++ S L+ +L R + + +F G
Sbjct: 231 LSRLIDMESPE-LAIIFGRTKRRVDELSEALQKRGYSADGLHGDLSQNQRDNVMRKFRDG 289
Query: 316 LYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIH 375
DV++A+D A RG+D V++VINFD P D + Y+H
Sbjct: 290 SIDVLVATDVAA-----------------------RGLDVSGVTHVINFDLPQDPESYVH 326
Query: 376 RAGRTARGKNQGTALSFVSLREQDLMN 402
R GRT R +GTA SFV+ RE D ++
Sbjct: 327 RIGRTGRAGKEGTAWSFVTPRETDHLH 353
>gi|327307140|ref|XP_003238261.1| ATP-dependent rRNA helicase RRP3 [Trichophyton rubrum CBS 118892]
gi|326458517|gb|EGD83970.1| ATP-dependent rRNA helicase RRP3 [Trichophyton rubrum CBS 118892]
Length = 474
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 125/365 (34%), Positives = 186/365 (50%), Gaps = 35/365 (9%)
Query: 32 AIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQE 91
A LG+ PT IQ +IPL LQ +D++ A TGSGKT AFA+P++Q ++ + Q
Sbjct: 63 ACTSLGYKTPTPIQAESIPLALQGRDLVGLAETGSGKTAAFALPILQALME-----KPQP 117
Query: 92 TKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATP 151
LVL+P++EL Q+ + + L S V+C I +D+ Q L ++P I+VATP
Sbjct: 118 YFGLVLAPTRELAVQISEAFEALGSLIS--VRCAVIVGGMDMISQSISLGKKPHIIVATP 175
Query: 152 ARALAHLK-AKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLS 210
R L HL+ K L+ +L+ +++DEAD + + + +LK LP+ + L SATLS
Sbjct: 176 GRLLDHLENTKGFSLR-NLKYLVMDEADRLLDLDFGPVLDKILKVLPRERRTYLFSATLS 234
Query: 211 EDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGK-T 269
V SL+ L NP+ + + VS L +I K +Y + LN G+ T
Sbjct: 235 SKVESLQRASLSNPLRVSISSNKYQTVSTLLQSYIFIPHKYKD--IYLVHILNEFPGQTT 292
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
IIF TV++ +L + L L+ +L AR A+ +F G D+++A+D A
Sbjct: 293 IIFTRTVNETQRLSILLRALGFGAIPLHGQLSQSARLGALGKFRSGSRDILVATDVAA-- 350
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
RG+D V V+NFD P D + YIHR GRTAR G A
Sbjct: 351 ---------------------RGLDIPAVDLVLNFDLPSDSKTYIHRVGRTARAGKSGRA 389
Query: 390 LSFVS 394
+S V+
Sbjct: 390 ISVVT 394
>gi|410860280|ref|YP_006975514.1| ATP-dependent RNA helicase [Alteromonas macleodii AltDE1]
gi|410817542|gb|AFV84159.1| ATP-dependent RNA helicase [Alteromonas macleodii AltDE1]
Length = 586
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 122/384 (31%), Positives = 197/384 (51%), Gaps = 35/384 (9%)
Query: 21 FTFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMI 77
TF +P LQA+ K+G+ +P+ IQ +IPL+L+ D+L +A+TG+GKT AFA+PM+
Sbjct: 7 MTFKDLNLPEPILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAAFALPML 66
Query: 78 QKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQE 137
I ++ Q+ LVL+P++EL Q+ + Q + S+ +K + + Q
Sbjct: 67 ANIDPEQRKPQL-----LVLAPTRELAIQVAEAFQ-VYASFSQKIKVLPVYGGQSYDNQI 120
Query: 138 PLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLP 197
L +VV TP R + H+K KTLDL S L+ +++DEAD + G+ DD++ +L P
Sbjct: 121 RQLKRGVQVVVGTPGRIIDHIKRKTLDL-SELKYLVLDEADEMLRMGFIDDVELILSHAP 179
Query: 198 KLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILY 257
+ Q L SAT+ + + L++P +K+ ++ S + + K L
Sbjct: 180 EERQTALFSATMPGPIKKITQRYLKDPKHVKIAS-KVSTASTIRQRYCQIAPHHKLEALT 238
Query: 258 TLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLY 317
++++ G IIFV T +L L LN ++P AR V + QG
Sbjct: 239 RIMEVEAFDG-MIIFVRTKTATVELADKLSARGYDVEPLNGDIPQSARERTVEKLKQGQI 297
Query: 318 DVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRA 377
D+++A+D V+RG+D + VS+VIN+D P D + Y+HR
Sbjct: 298 DILVATDV-----------------------VARGLDVERVSHVINYDIPYDSESYVHRI 334
Query: 378 GRTARGKNQGTALSFVSLREQDLM 401
GRT R QG A+ F+S RE+ L+
Sbjct: 335 GRTGRAGRQGDAILFISHREKRLL 358
>gi|451945837|ref|YP_007466432.1| DNA/RNA helicase, superfamily II [Desulfocapsa sulfexigens DSM
10523]
gi|451905185|gb|AGF76779.1| DNA/RNA helicase, superfamily II [Desulfocapsa sulfexigens DSM
10523]
Length = 435
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 119/377 (31%), Positives = 190/377 (50%), Gaps = 48/377 (12%)
Query: 33 IAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQET 92
I+ G+ PT IQE+AIP ++ KD+L A+TG+GKT AFA+P+I+K+ +
Sbjct: 16 ISTCGYEHPTPIQEKAIPEVMSGKDILGLAQTGTGKTAAFALPIIEKLAGGPRG----NV 71
Query: 93 KALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPA 152
+AL+++P++EL Q+ + +EL ++ + + V Q +I+VA P
Sbjct: 72 RALIIAPTRELAEQITTSFKELAADTG--LRILAVYGGVGKKPQFDAFNRGVEILVACPG 129
Query: 153 RALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSED 212
R L HL L L +S+ +++DEAD +F G+ D++ +LK LP Q +L SAT+ D
Sbjct: 130 RLLDHLNNHDLKL-TSVATLVLDEADQMFDMGFFPDIRRILKHLPSKRQTLLFSATMPAD 188
Query: 213 VLSLKHLILRNP--VILKLEEP------AIAPVSQLAHYHILAQEDEKATILYTLLKLNL 264
+ L L NP + +KLE+P A+ PVS+ +K+ +L +L+ +
Sbjct: 189 IRKLADETLTNPKEIRIKLEQPLDLITQALYPVSK----------RQKSDLLVHILQKDP 238
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
V+G T+IF T L LE+ ST L + R A+ F G + +++A+D
Sbjct: 239 VEGSTLIFTRTKYGAKNLAKKLEKSGFSTSALQGNMSQNQRNMALEGFRDGTFKILVATD 298
Query: 325 EKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384
A RGID V+ V+NFD P + Y HR GRT R +
Sbjct: 299 IAA-----------------------RGIDVSRVAQVVNFDLPSTAEAYTHRIGRTGRAE 335
Query: 385 NQGTALSFVSLREQDLM 401
G A+SF+ +Q ++
Sbjct: 336 RSGRAISFMCYDDQAMV 352
>gi|78776226|ref|YP_392541.1| DEAD/DEAH box helicase [Sulfurimonas denitrificans DSM 1251]
gi|78496766|gb|ABB43306.1| DEAD/DEAH box helicase-like protein [Sulfurimonas denitrificans DSM
1251]
Length = 398
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 121/387 (31%), Positives = 206/387 (53%), Gaps = 34/387 (8%)
Query: 19 LPFTFTLFCIP-LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMI 77
+ FT P L+AI G+ +PT IQ++AIP+IL KD+L A+TG+GKT F +P++
Sbjct: 1 MSFTTLGLSAPILKAIKDQGYTKPTPIQKQAIPIILSKKDILAGAQTGTGKTAGFTLPLL 60
Query: 78 QKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQE 137
+ +++ +++ + +AL+L+P++EL Q+ +++ S I V ++ Q
Sbjct: 61 E-LLSRDKSSTKKRIRALILTPTRELAAQVGESVSIYGKYLS--FTSTIIYGGVSINPQL 117
Query: 138 PLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLP 197
L + DIV+ATP R L HL K++DLK +E +++DEAD + G+ +D+K VL LP
Sbjct: 118 SALRKGVDIVIATPGRLLDHLSQKSIDLKD-VEFLVLDEADRMLDMGFINDIKKVLAVLP 176
Query: 198 KLYQAILASATLSEDVLSLKHLILRNPVILKLEEP--AIAPVSQLAHYHILAQEDEKATI 255
K Q +L SAT S+++ L +L +PV++++E P + Q+ + ++ K +
Sbjct: 177 KNKQTLLFSATYSDEIKKLSDRLLNSPVLIEVERPNKTAQSIKQIVYP---VDKERKREL 233
Query: 256 LYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQG 315
L L+K Q + ++F T KL LE+ IS+ ++ AR A+ +F G
Sbjct: 234 LVHLIKEGKWQ-QVLVFTRTKHGANKLSAQLEKDGISSSAIHGNKSQNARMKALQEFKDG 292
Query: 316 LYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIH 375
V++A+D A RGID + +VIN++ P + Y+H
Sbjct: 293 DIRVLVATDIAA-----------------------RGIDIDQLPHVINYELPNVPEDYVH 329
Query: 376 RAGRTARGKNQGTALSFVSLREQDLMN 402
R GRT R + G A+S V + E + ++
Sbjct: 330 RIGRTGRAGSSGDAISLVCIDEHEYLS 356
>gi|405964769|gb|EKC30218.1| Putative ATP-dependent RNA helicase DDX47 [Crassostrea gigas]
Length = 1146
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 117/366 (31%), Positives = 194/366 (53%), Gaps = 36/366 (9%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ 90
+A +L W PT IQ+ AIP+ LQ DV+ A TGSGKTGAFA+P++Q +++ + Q
Sbjct: 52 EACEQLKWKTPTKIQKEAIPVALQGSDVIGLAETGSGKTGAFALPILQTLLD-----KPQ 106
Query: 91 ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVAT 150
ALVL+P++EL Q+ + + L S +KC I +D+ Q +L ++P IV+AT
Sbjct: 107 RLYALVLTPTRELAFQISEQFEAL--GASIGIKCAVIVGGIDMMTQSLMLAKKPHIVIAT 164
Query: 151 PARALAHLK-AKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
P R + HL+ K +L+ SL+ +++DEAD + + +E ++ +LK +P+ +L SAT+
Sbjct: 165 PGRLVDHLENTKGFNLR-SLKYLVMDEADRILNMDFEQEVDKILKAIPRERNTLLFSATM 223
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
++ V L+ L+NPV +++ V +L Y++ K +Y + LN + G +
Sbjct: 224 TKKVAKLQRASLQNPVRVEVSS-KYQTVDKLQQYYLFIPVKFKD--VYLVYILNELAGNS 280
Query: 270 -IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL 328
++F +T ++ L L ++ L+ ++ R A+ +F ++IA+D
Sbjct: 281 FMVFCSTCANTQRVALMLRNLGLTAIPLHGQMSQSKRLGALNKFKSKNRSILIATDV--- 337
Query: 329 ETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGT 388
SRG+D V V+N D P + YIHR GRTAR G
Sbjct: 338 --------------------ASRGLDIPHVDVVLNLDIPTHSKDYIHRVGRTARAGRSGV 377
Query: 389 ALSFVS 394
A++FVS
Sbjct: 378 AITFVS 383
>gi|194015931|ref|ZP_03054546.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Bacillus pumilus ATCC 7061]
gi|194012286|gb|EDW21853.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Bacillus pumilus ATCC 7061]
Length = 496
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 120/410 (29%), Positives = 217/410 (52%), Gaps = 49/410 (11%)
Query: 19 LPFTFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIP 75
+ TF F + ++AI ++G+ E T IQ IPL LQNKDV+ +A+TG+GKT AF IP
Sbjct: 1 MTITFQDFQLSESLMKAINRMGFEEATPIQAETIPLGLQNKDVIGQAQTGTGKTAAFGIP 60
Query: 76 MIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSV 135
+++KI Q A++++P++EL Q+ + + ++ + + + I D+
Sbjct: 61 LVEKIDPASPNIQ-----AIIIAPTRELAIQVSEELYKIGQ--DKRARVLPIYGGQDIGR 113
Query: 136 QEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKF 195
Q L + P I+V TP R L H+ +T+ L+ ++E V++DEAD + + G+ +D++++L
Sbjct: 114 QIRSLKKNPHIIVGTPGRLLDHINRRTMRLQ-NVETVVLDEADEMLNMGFIEDIESILSN 172
Query: 196 LPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATI 255
+P +Q +L SAT+ + + + NP +K++ + VS + +++ E +K
Sbjct: 173 VPSEHQTLLFSATMPAPIKRIAERFMTNPEHVKVKAKEMT-VSNIQQFYLDIHERKKFDT 231
Query: 256 LYTLL-----KLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVY 310
L LL +L++V G+T V+ + + L+ Y + ++ +L R A+
Sbjct: 232 LTRLLDIQSPELSIVFGRTKRRVDELTEALNLRGYTAEG------IHGDLTQAKRMVALR 285
Query: 311 QFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDI 370
+F +G DV++A+D A RG+D V++V NFD P D
Sbjct: 286 KFKEGSIDVLVATDVAA-----------------------RGLDISGVTHVYNFDVPQDP 322
Query: 371 QCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMND 420
+ Y+HR GRT R G A++F++ RE+D++ A+ + R+ D M +
Sbjct: 323 ESYVHRIGRTGRAGRTGMAVTFITPREKDMLR---AIEQTTKRKMDRMKE 369
>gi|404492159|ref|YP_006716265.1| ATP-dependent RNA helicase RhlE [Pelobacter carbinolicus DSM 2380]
gi|77544268|gb|ABA87830.1| ATP-dependent RNA helicase RhlE [Pelobacter carbinolicus DSM 2380]
Length = 432
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 110/365 (30%), Positives = 191/365 (52%), Gaps = 35/365 (9%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ 90
+ I G++ PT IQ +AIP ++ +DV+ A+TG+GKT AFA+P++Q++I+ +
Sbjct: 14 KGIVAAGYVTPTPIQAQAIPSVIDGRDVMGLAQTGTGKTAAFALPILQRLIDGPRG---- 69
Query: 91 ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVAT 150
+ALV++P++EL Q+H+ I EL ++ + + V++ Q L DIVVA
Sbjct: 70 RLRALVVAPTRELAEQIHQAIGELGRHTG--LRSMTVYGGVNIRPQIAGLKRGVDIVVAC 127
Query: 151 PARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLS 210
P R + H+ KT+DL S++E++++DEAD +F G+ ++ +L+ +P Q +L SAT+
Sbjct: 128 PGRLIDHIGQKTIDL-SNIEVLVLDEADQMFDMGFFPAVRQILRHVPAQRQTLLFSATMP 186
Query: 211 EDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTI 270
+ L +L +P+ +++ P ++H + +K +L L L+ V +++
Sbjct: 187 AAIRRLSGEVLTSPMTVQVGN--TTPAETVSHALYPVAQHQKTAMLLEL--LSAVDSRSV 242
Query: 271 -IFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
+F T + +L L L + L L R A+ F G Y++++A+D A
Sbjct: 243 LVFTRTKHRAKRLGLQLGKAGYQATSLQGNLSQARRQEALTGFRDGKYEILVATDIAA-- 300
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
RGID VS+VIN+D P + Y+HR GRT R +G A
Sbjct: 301 ---------------------RGIDVSQVSHVINYDIPDTAEAYVHRIGRTGRASRKGEA 339
Query: 390 LSFVS 394
+ V+
Sbjct: 340 FTLVT 344
>gi|389774441|ref|ZP_10192560.1| ATP-dependent RNA helicase [Rhodanobacter spathiphylli B39]
gi|388438040|gb|EIL94795.1| ATP-dependent RNA helicase [Rhodanobacter spathiphylli B39]
Length = 442
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 117/367 (31%), Positives = 187/367 (50%), Gaps = 29/367 (7%)
Query: 37 GWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALV 96
G+ +PT IQ AIP +L+ D+L A+TG+GKT AFA+P++QK+ QT + +AL+
Sbjct: 20 GYTQPTPIQAAAIPSVLEGHDLLAAAQTGTGKTAAFALPLLQKLSTSGQT-MTRRPRALI 78
Query: 97 LSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALA 156
L+P++EL Q+H+NI++ + + I V + Q L DIV+ATP R +
Sbjct: 79 LTPTRELAAQIHENIRDYSKFI--QISATTIFGGVGMGPQINALRRGVDIVIATPGRLID 136
Query: 157 HLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSL 216
H++ +TLDL S++E +I+DEAD + G+ +K +L+ +PK Q +L SAT + + +L
Sbjct: 137 HMQQRTLDL-SAVETLILDEADRMLDMGFLPALKRILQSVPKRRQTLLFSATFAPAIKTL 195
Query: 217 KHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTIIFVNTV 276
+ NP + + P H + ++ +L+ L + + Q T++F T
Sbjct: 196 AMEFMHNPKEISVSAPNTVTTLVSHQVHPVDASRKRDLLLHVLSQDSRRQ--TLVFSRTK 253
Query: 277 DKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINST 336
KL +L + + ++ AR A+ F G V++A+D A
Sbjct: 254 HGADKLVTFLNASGLRSAAIHGNKSQNARTRALSDFKSGRVTVMVATDIAA--------- 304
Query: 337 NNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLR 396
RGID + + VINFD P + Y+HR GRT R +G ALS VS
Sbjct: 305 --------------RGIDIEQLPIVINFDLPSVAEDYVHRIGRTGRAGMEGLALSLVSHD 350
Query: 397 EQDLMND 403
E L+ D
Sbjct: 351 ESGLLFD 357
>gi|327282682|ref|XP_003226071.1| PREDICTED: ATP-dependent RNA helicase DDX54-like [Anolis
carolinensis]
Length = 840
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 130/367 (35%), Positives = 188/367 (51%), Gaps = 33/367 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
+ + K G+ PT IQ + IP+IL KDV+ ARTGSGKT F IPM +K LK +
Sbjct: 75 FKGVMKKGYKIPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLIPMFEK---LKAHSAK 131
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+AL+LSP++EL Q K +EL +K I + Q L E PDI++A
Sbjct: 132 TGARALILSPTRELALQTLKFTKELGRFAG--LKTALILGGDKMEDQFAALHENPDIIIA 189
Query: 150 TPARALAHLKAKTLDLK-SSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
TP R L H+ A + LK S+E V+ DEAD +F G+ + +K ++ LP+ Q +L SAT
Sbjct: 190 TPGR-LMHV-AVEMKLKLHSVEYVVFDEADRLFEMGFSEHLKEIISRLPESRQTVLFSAT 247
Query: 209 LSEDVLSLKHLILRNPVILKLE-EPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
L + ++ L PV+++L+ E ++ +L+ YHI A +D+ A +LY L + Q
Sbjct: 248 LPKVLVEFARAGLTEPVLIRLDVESKLSEQLKLSFYHIRA-DDKPALLLYLLRTVVRPQD 306
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
+TI+FV T LK L + + S L AR + +F G V+I +D A
Sbjct: 307 QTIVFVATKHHTEYLKELLTAQGVDCTHVYSSLDQTARKINIGKFTHGKCSVLIVTDLAA 366
Query: 328 LETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQG 387
RGID + NVIN+ FP + ++HR GR AR G
Sbjct: 367 -----------------------RGIDIPLLDNVINYSFPAKPKLFLHRVGRVARAGRSG 403
Query: 388 TALSFVS 394
TA SFV+
Sbjct: 404 TAYSFVA 410
>gi|420246760|ref|ZP_14750191.1| DNA/RNA helicase, superfamily II, partial [Burkholderia sp. BT03]
gi|398073382|gb|EJL64557.1| DNA/RNA helicase, superfamily II, partial [Burkholderia sp. BT03]
Length = 411
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 114/384 (29%), Positives = 194/384 (50%), Gaps = 31/384 (8%)
Query: 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIIN 82
F L L+AIA+ G+ PT IQ AIP++L +DV+ A+TG+GKT F++P+IQ+++
Sbjct: 16 FGLHADILKAIAEQGYTTPTPIQAEAIPVVLGGRDVMGAAQTGTGKTAGFSLPIIQRLLP 75
Query: 83 LKQTAQV---QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL 139
L T+ +AL+L+P++EL +Q+ N+Q S ++ + VD++ Q
Sbjct: 76 LASTSASPARHPVRALILTPTRELADQVAANVQAYAKHTS--LRSAVVFGGVDMNPQSAE 133
Query: 140 LVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199
L +I++ATP R L H++ KT +L ++I+++DEAD + G+ D++ +L LP
Sbjct: 134 LRRGVEILIATPGRLLDHVQQKTANL-GQVQILVLDEADRMLDMGFLPDLQRILNLLPAE 192
Query: 200 YQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTL 259
Q +L SAT S ++ L LRNP +++ + + +A+ D+ ++ +
Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTATNVTQIVYEVAEGDKTGAVVKLI 252
Query: 260 LKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDV 319
L Q I+F N+ +L LE+ + ++ + R A+ F +G +
Sbjct: 253 RDRGLKQ--VIVFCNSKIGASRLARQLERDGVVATAIHGDRTQSERMQALDAFKRGEIEA 310
Query: 320 IIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGR 379
++A+D A RG+D + VINFD P + + Y+HR GR
Sbjct: 311 LVATDVAA-----------------------RGLDIAELPAVINFDLPFNAEDYVHRIGR 347
Query: 380 TARGKNQGTALSFVSLREQDLMND 403
T R G ALS S E+ + D
Sbjct: 348 TGRAGASGDALSLFSPHERKQLAD 371
>gi|374287718|ref|YP_005034803.1| putative ATP-dependent RNA helicase [Bacteriovorax marinus SJ]
gi|301166259|emb|CBW25834.1| putative ATP-dependent RNA helicase [Bacteriovorax marinus SJ]
Length = 431
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 117/368 (31%), Positives = 190/368 (51%), Gaps = 38/368 (10%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ +A G+ PT IQ AIPLIL+ +D+ A+TGSGKTGAF+IPMI+ + KQ +
Sbjct: 14 LKTLADKGYSTPTDIQREAIPLILEGRDIQGIAQTGSGKTGAFSIPMIENLSRSKQVVKA 73
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL-----LVERP 144
+ +AL+L+P++EL NQ++ ++ + K +++S V PL L
Sbjct: 74 KRARALILTPTRELANQINGQVEIYS-------KGMNLSSAVIFGGDGPLNQVRKLATGV 126
Query: 145 DIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAIL 204
D+++ATP R L L+ + L LE ++DEAD + G+ D++ +++ LPK Q +
Sbjct: 127 DLLIATPGRLLDFLQRGHIKL-DELETFVLDEADRMLDMGFIKDIEKIIERLPKKRQTLF 185
Query: 205 ASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNL 264
SAT+ +D+ L IL P I+++ P+ PV +A Y I +K +L ++ ++
Sbjct: 186 FSATMPKDISKLASTILTRPKIIEVSPPS-TPVESIAQYLIHIDRVQKPKLLKKIINESV 244
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
+ I+F T ++ +L + I + ++S AR A+ F ++A+D
Sbjct: 245 SES-VIVFTRTKYGADRVCKHLMKAGIESSSIHSNRSQGAREKALAAFRNKKIKALVATD 303
Query: 325 EKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384
A RGID +S+VIN+D PL+ + YIHR GRTAR
Sbjct: 304 IAA-----------------------RGIDVDGISHVINYDVPLEAESYIHRIGRTARAG 340
Query: 385 NQGTALSF 392
G A +F
Sbjct: 341 KSGVAYTF 348
>gi|310641357|ref|YP_003946115.1| DEAD/DEAH box helicase [Paenibacillus polymyxa SC2]
gi|386040399|ref|YP_005959353.1| DEAD-box ATP-dependent RNA helicase ydbR [Paenibacillus polymyxa
M1]
gi|309246307|gb|ADO55874.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
polymyxa SC2]
gi|343096437|emb|CCC84646.1| DEAD-box ATP-dependent RNA helicase ydbR [Paenibacillus polymyxa
M1]
Length = 525
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 120/385 (31%), Positives = 207/385 (53%), Gaps = 38/385 (9%)
Query: 22 TFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQ 78
TF F + +QAI +LG+ E T IQ ++IP+ LQ KD++ +A+TG+GKT AF IPMI
Sbjct: 3 TFAEFDLEPKVIQAITELGFEEATPIQSKSIPIALQGKDMIGQAQTGTGKTAAFGIPMIN 62
Query: 79 KIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEP 138
KI + ++ +AL+++P++EL Q+ + I++L+ + ++ + I D+ Q
Sbjct: 63 KI-----SKNDEKIRALIMAPTRELAIQVAEEIEKLSR--FKGLRTLPIYGGQDIVRQIR 115
Query: 139 LLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPK 198
L ++P I++ TP R L H+ KT+ L+ + V++DEAD + G+ +D++++LK +P
Sbjct: 116 ALKKKPQIIIGTPGRLLDHINRKTIKLE-DVNTVVLDEADEMLDMGFMEDIQSILKQVPD 174
Query: 199 LYQAILASATLSEDVLSLKHLILRNPV-ILKLEEPAIAPVSQLAHYHILAQEDEKATILY 257
Q +L SAT+ ++ L L++P + + + AP+ + +I E +K L
Sbjct: 175 ERQTMLFSATMPPNIKRLAEQFLKDPEHVSVIPKQVSAPL--IDQAYIEVPERQKFEALS 232
Query: 258 TLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLY 317
L+ + + I+F T + +L L++ S L+ +L R + +F G
Sbjct: 233 RLIDMESPE-LAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQNQRDAVMRKFRDGSI 291
Query: 318 DVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRA 377
DV++A+D A RG+D V++V+NFD P D + Y+HR
Sbjct: 292 DVLVATDVAA-----------------------RGLDVSGVTHVVNFDLPQDPESYVHRI 328
Query: 378 GRTARGKNQGTALSFVSLREQDLMN 402
GRT R +G A SFV+ RE D ++
Sbjct: 329 GRTGRAGKEGEAWSFVTPREIDHLH 353
>gi|157960395|ref|YP_001500429.1| DEAD/DEAH box helicase [Shewanella pealeana ATCC 700345]
gi|157845395|gb|ABV85894.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
700345]
Length = 623
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 119/388 (30%), Positives = 200/388 (51%), Gaps = 36/388 (9%)
Query: 14 QVYFELPFTFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFA 73
+ + EL T +L ++A+ LG+ +PT IQ +I ++ NKD+L +A+TG+GKTGAFA
Sbjct: 6 KTFRELGLTESL----VRALDDLGYEKPTPIQAASIEPLMANKDILGQAQTGTGKTGAFA 61
Query: 74 IPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDV 133
+P++ I Q+ LVL+P++EL Q+ + K + + + I +
Sbjct: 62 LPLLNSIDPNTNAPQI-----LVLAPTRELAVQVAEAFASYA-KYMKGLHVLPIYGGQSM 115
Query: 134 SVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVL 193
Q L P I+V TP R + H++ TL L +L+ +++DEAD + G+ DD++ +L
Sbjct: 116 QQQLNALRRGPQIIVGTPGRVMDHMRRGTLKL-DTLKAMVLDEADEMLKMGFIDDIEWIL 174
Query: 194 KFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKA 253
+ PK Q L SAT+ E + + + L NPV +K+ + V + + + K
Sbjct: 175 EHTPKTRQLALFSATMPEQIKRVANKYLDNPVHVKIAA-TTSTVETIEQRFVQVSQHNKL 233
Query: 254 TILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFN 313
L +L++ +G IIFV T + C +L LE ++ L+ ++ +AR A+ Q
Sbjct: 234 EALVRVLEVEKTEG-IIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAIEQLK 292
Query: 314 QGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCY 373
+G D+IIA+D A RG+D + + +V+N+D P D + Y
Sbjct: 293 RGQLDIIIATDVAA-----------------------RGLDVERIGHVVNYDIPYDTEAY 329
Query: 374 IHRAGRTARGKNQGTALSFVSLREQDLM 401
+HR GRT R G A+ FV+ RE ++
Sbjct: 330 VHRIGRTGRAGRTGMAILFVTHREMRML 357
>gi|170725001|ref|YP_001759027.1| DEAD/DEAH box helicase [Shewanella woodyi ATCC 51908]
gi|169810348|gb|ACA84932.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
51908]
Length = 605
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 116/372 (31%), Positives = 195/372 (52%), Gaps = 32/372 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+ +LG+ +PT IQ +I ++ NKD+L +A+TG+GKTGAFA+P++ I Q+
Sbjct: 18 LRALDELGYEKPTPIQAASIDPLMANKDILGQAQTGTGKTGAFALPLLNSIDPTTNAPQI 77
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
LVL+P++EL Q+ + + K + + + I + Q L P I+V
Sbjct: 78 -----LVLAPTRELAVQVAEAFASYS-KFMKGMHVLPIYGGQSMQQQLNSLRRGPQIIVG 131
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + H++ TL L ++L+ +++DEAD + G+ DD++ +L+ P+ Q L SAT+
Sbjct: 132 TPGRVMDHMRRGTLKL-ATLKAMVLDEADEMLKMGFIDDIEWILEHTPQERQLALFSATM 190
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + + + L NPV +K+ V + + + K L +L++ +G
Sbjct: 191 PEQIKRVANKYLDNPVHVKIAA-TTTTVETIEQRFVQVSQHNKLEALVRVLEVEKTEG-I 248
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
IIFV T + C +L LE ++ L+ ++ +AR AV Q +G D+IIA+D A
Sbjct: 249 IIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDIIIATDVAA-- 306
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
RG+D + + +V+N+D P D + Y+HR GRT R G A
Sbjct: 307 ---------------------RGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMA 345
Query: 390 LSFVSLREQDLM 401
+ FV+ RE ++
Sbjct: 346 ILFVTHREMRML 357
>gi|110638001|ref|YP_678208.1| ATP-dependent RNA helicase [Cytophaga hutchinsonii ATCC 33406]
gi|110280682|gb|ABG58868.1| ATP-dependent RNA helicase (cold-shock DEAD-box protein A)
[Cytophaga hutchinsonii ATCC 33406]
Length = 580
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 116/375 (30%), Positives = 202/375 (53%), Gaps = 34/375 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++AI +G+ E T IQE+ IP+++ KD+ +A+TG+GKT AF IP I+ + +
Sbjct: 13 VEAIESIGYSEATPIQEKTIPILMTGKDLTGQAQTGTGKTAAFGIPAIEHV-----DISI 67
Query: 90 QETKALVLSPSKELCNQLHKNIQELT-MKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
+T++L+L P++EL Q+ +++L+ K V V E ++ +++ L IVV
Sbjct: 68 NQTQSLILCPTRELALQVCTELKKLSKFKKGLRVLAVYGGESIERQIRD--LKAGAHIVV 125
Query: 149 ATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
TP R + HL +TL+ S L +I+DEAD + + G+ +D++ +L LP+ Q +L SAT
Sbjct: 126 GTPGRIIDHLDRRTLN-ASHLSQIILDEADEMLNMGFREDIELILTRLPEERQTVLFSAT 184
Query: 209 LSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGK 268
L+ +L+L NP I+K+E + +S + ++ L + +K I+ ++ LN +Q
Sbjct: 185 LAPPILALAKRFQNNPEIIKIERKELT-ISTVEQFYYLVKNSQKTEIVTQIIDLNNLQ-L 242
Query: 269 TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL 328
+IF NT K ++ L+ + + L+ + + R + +F +GL ++++A+D A
Sbjct: 243 MLIFCNTKRKVEEVTDELKAYGHNPISLHGDKTQRDRTEVMSKFRKGLANILVATDVAA- 301
Query: 329 ETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGT 388
RGID V VIN+D PLDI+ Y+HR GRT R G
Sbjct: 302 ----------------------RGIDVTGVDAVINYDVPLDIENYVHRIGRTGRAGQLGK 339
Query: 389 ALSFVSLREQDLMND 403
+ + V+ E+ + D
Sbjct: 340 SFTLVTSDEKYKLRD 354
>gi|302660698|ref|XP_003022025.1| hypothetical protein TRV_03842 [Trichophyton verrucosum HKI 0517]
gi|291185951|gb|EFE41407.1| hypothetical protein TRV_03842 [Trichophyton verrucosum HKI 0517]
Length = 474
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 125/365 (34%), Positives = 186/365 (50%), Gaps = 35/365 (9%)
Query: 32 AIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQE 91
A LG+ PT IQ +IPL LQ +D++ A TGSGKT AFA+P++Q ++ + Q
Sbjct: 63 ACTSLGYKTPTPIQAESIPLALQGRDLVGLAETGSGKTAAFALPILQALME-----KPQP 117
Query: 92 TKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATP 151
LVL+P++EL Q+ + + L S V+C I +D+ Q L ++P I+VATP
Sbjct: 118 YFGLVLAPTRELAVQITEAFEALGSLIS--VRCAVIVGGMDMISQSISLGKKPHIIVATP 175
Query: 152 ARALAHLK-AKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLS 210
R L HL+ K L+ +L+ +++DEAD + + + +LK LP+ + L SATLS
Sbjct: 176 GRLLDHLENTKGFSLR-NLKYLVMDEADRLLDLDFGPVLDKILKVLPRERRTYLFSATLS 234
Query: 211 EDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGK-T 269
V SL+ L NP+ + + VS L +I K +Y + LN G+ T
Sbjct: 235 SKVESLQRASLSNPLRVSISSNKYQTVSTLLQSYIFIPHKYKD--IYLVHILNEFPGQTT 292
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
IIF TV++ +L + L L+ +L AR A+ +F G D+++A+D A
Sbjct: 293 IIFTRTVNETQRLSILLRALGFGAIPLHGQLSQSARLGALGKFRSGSRDILVATDVAA-- 350
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
RG+D V V+NFD P D + YIHR GRTAR G A
Sbjct: 351 ---------------------RGLDIPAVDLVLNFDLPSDSKTYIHRVGRTARAGKSGRA 389
Query: 390 LSFVS 394
+S V+
Sbjct: 390 ISVVT 394
>gi|302792278|ref|XP_002977905.1| hypothetical protein SELMODRAFT_107914 [Selaginella moellendorffii]
gi|300154608|gb|EFJ21243.1| hypothetical protein SELMODRAFT_107914 [Selaginella moellendorffii]
Length = 741
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 121/376 (32%), Positives = 201/376 (53%), Gaps = 36/376 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A LG+ +PT IQ IPL L +D+ A TGSGKT AFA+P+++++ L + ++
Sbjct: 127 LRACDALGYRQPTPIQAACIPLALAGRDICGSAVTGSGKTAAFALPILERL--LFRPRRI 184
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ L+++P++EL QLH I++L D++C + + VQE L PDIVVA
Sbjct: 185 PAIRVLIITPTRELAVQLHSMIEKLAQFT--DIRCCLVVGGLSSKVQEVALRTHPDIVVA 242
Query: 150 TPARALAHLK-AKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
TP R + HL+ +++ L+ L I+++DEAD + G+ +++ ++K P Q +L SAT
Sbjct: 243 TPGRMIDHLRNTQSVGLEE-LAILVLDEADRLLELGFREEIHELVKLCPSRRQTMLFSAT 301
Query: 209 LSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHI---LAQEDEKATILYTLLKLNLV 265
++++V L L L++PV L + P+ S L I E++K I+ +L +L
Sbjct: 302 MTDEVSELIKLSLKSPVRLSAD-PSTERPSTLTEEVIRIRAGHEEDKEAIVLSLCSRSL- 359
Query: 266 QGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE 325
+ KTIIF T + ++LK+ + + L+ L R A+ F + D +IA+D
Sbjct: 360 KSKTIIFSGTKVEAHRLKILFGLSGLKSAELHGNLTQAQRLEALEAFRKQEVDFLIATDV 419
Query: 326 KALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKN 385
A RG+D V +VIN + P +I+ Y+HR GRTAR
Sbjct: 420 AA-----------------------RGLDIIGVESVINLECPKEIKTYVHRVGRTARAGR 456
Query: 386 QGTALSFVSLREQDLM 401
G +++ ++ EQD +
Sbjct: 457 HGRSVTLMT--EQDRL 470
>gi|302508139|ref|XP_003016030.1| hypothetical protein ARB_05427 [Arthroderma benhamiae CBS 112371]
gi|291179599|gb|EFE35385.1| hypothetical protein ARB_05427 [Arthroderma benhamiae CBS 112371]
Length = 474
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 125/365 (34%), Positives = 186/365 (50%), Gaps = 35/365 (9%)
Query: 32 AIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQE 91
A LG+ PT IQ +IPL LQ +D++ A TGSGKT AFA+P++Q ++ + Q
Sbjct: 63 ACTSLGYKTPTPIQAESIPLALQGRDLVGLAETGSGKTAAFALPILQALME-----KPQP 117
Query: 92 TKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATP 151
LVL+P++EL Q+ + + L S V+C I +D+ Q L ++P I+VATP
Sbjct: 118 YFGLVLAPTRELAVQITEAFEALGSLIS--VRCAVIVGGMDMISQSISLGKKPHIIVATP 175
Query: 152 ARALAHLK-AKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLS 210
R L HL+ K L+ +L+ +++DEAD + + + +LK LP+ + L SATLS
Sbjct: 176 GRLLDHLENTKGFSLR-NLKYLVMDEADRLLDLDFGPVLDKILKVLPRERRTYLFSATLS 234
Query: 211 EDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGK-T 269
V SL+ L NP+ + + VS L +I K +Y + LN G+ T
Sbjct: 235 SKVESLQRASLSNPLRVSISSNKYQTVSTLLQSYIFIPHKYKD--IYLVHILNEFPGQTT 292
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
IIF TV++ +L + L L+ +L AR A+ +F G D+++A+D A
Sbjct: 293 IIFTRTVNETQRLSILLRALGFGAIPLHGQLSQSARLGALGKFRSGSRDILVATDVAA-- 350
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
RG+D V V+NFD P D + YIHR GRTAR G A
Sbjct: 351 ---------------------RGLDIPAVDLVLNFDLPSDSKTYIHRVGRTARAGKSGRA 389
Query: 390 LSFVS 394
+S V+
Sbjct: 390 ISVVT 394
>gi|381182260|ref|ZP_09891076.1| ATP-dependent RNA helicase DeaD [Listeriaceae bacterium TTU M1-001]
gi|380317854|gb|EIA21157.1| ATP-dependent RNA helicase DeaD [Listeriaceae bacterium TTU M1-001]
Length = 502
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 111/373 (29%), Positives = 206/373 (55%), Gaps = 43/373 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++++ ++G+ E T IQE+ IP+ L KD++ +A+TG+GKT AF +PMIQKI ++ V
Sbjct: 14 VKSVERMGFEEATPIQEKTIPIGLAGKDLIGQAQTGTGKTAAFGLPMIQKID--QKNGDV 71
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
Q AL+++P++EL Q+ + + +L+ + V+ + + D+S Q L ++P IVV
Sbjct: 72 Q---ALIIAPTRELAIQVSEELYKLS--YDKHVRVLAVYGGSDISRQIRSLKKKPQIVVG 126
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H+ +TL L +++ +++DEAD + + G+ DD++++LK +P Q +L SAT+
Sbjct: 127 TPGRILDHINRRTLKL-DNVQTLVLDEADEMLNMGFIDDIESILKEVPSERQTLLFSATM 185
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLL-----KLNL 264
+ + + + +P +++++ + + + + I E EK +L LL +L +
Sbjct: 186 PDPIRRIGERFMHDPEMVRIKAKEMTAL-LIEQFFIKVHEKEKFDVLSRLLDVQSPELAI 244
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
V G+T V+ + + ++ Y+ + ++ +L R + +F +G DV++A+D
Sbjct: 245 VFGRTKRRVDELSRALDMRGYVAEG------IHGDLTQAKRMSVLRKFKEGKIDVLVATD 298
Query: 325 EKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384
A RG+D V++V N+D P D + Y+HR GRT R
Sbjct: 299 VAA-----------------------RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG 335
Query: 385 NQGTALSFVSLRE 397
+G A++FV RE
Sbjct: 336 KEGMAITFVQPRE 348
>gi|383759970|ref|YP_005438956.1| ATP-dependent RNA helicase RhlE [Rubrivivax gelatinosus IL144]
gi|381380640|dbj|BAL97457.1| ATP-dependent RNA helicase RhlE [Rubrivivax gelatinosus IL144]
Length = 485
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 114/377 (30%), Positives = 199/377 (52%), Gaps = 31/377 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII---NLKQT 86
L+A+A G+ T IQ +AIP++L +DV+ A+TG+GKT AF IP++QK++ N +
Sbjct: 38 LRAVADAGYTSMTPIQAKAIPIVLAGRDVMGAAQTGTGKTAAFTIPLLQKMLRHENTSMS 97
Query: 87 AQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDI 146
+ALVL+P++EL +Q+ N++ K +R ++ + VD+ Q L ++
Sbjct: 98 PARHPVRALVLAPTRELADQVAANVKTYA-KHTR-LRSAVVFGGVDMKPQTLELKAGVEV 155
Query: 147 VVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
++ATP R L H++AK L + +E V++DEAD + G+ D++ +L +LPK Q +L S
Sbjct: 156 LIATPGRLLDHIEAKNAVL-NQVEYVVLDEADRMLDIGFLPDLQRILSYLPKARQTLLFS 214
Query: 207 ATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQ 266
AT S ++ L L+ PV +++ P + ++ ++ +D++AT+ L + L Q
Sbjct: 215 ATFSPEIKRLAGSYLQEPVTVEVARPNATASTVEQRFYGVSDDDKRATVRQILRQRELSQ 274
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
I+FVN+ +L E+ + T L+ + R A+ F G D+++A+D
Sbjct: 275 A--IVFVNSKLGAARLARSFERDGLKTQALHGDKSQDERLKALAAFKAGEVDLLVATDVA 332
Query: 327 ALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQ 386
A RG+D + V NFD P + + Y+HR GRT R
Sbjct: 333 A-----------------------RGLDIADLPAVFNFDVPFNAEDYVHRIGRTGRAGAS 369
Query: 387 GTALSFVSLREQDLMND 403
G A++ ++ + L++D
Sbjct: 370 GLAVTLITRDDTRLVSD 386
>gi|336115431|ref|YP_004570198.1| DEAD/DEAH box helicase [Bacillus coagulans 2-6]
gi|335368861|gb|AEH54812.1| DEAD/DEAH box helicase domain protein [Bacillus coagulans 2-6]
Length = 475
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 115/373 (30%), Positives = 197/373 (52%), Gaps = 43/373 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+ ++G+ E + IQ IPL +Q KD++ +A+TG+GKT AF IP+I+KI + + Q
Sbjct: 14 LKAVKRMGFEEASPIQAATIPLTMQGKDIIGQAQTGTGKTAAFGIPLIEKIDHRSRNIQ- 72
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
++++P++EL Q+ + + + + SR V + + D+S Q L P I+V
Sbjct: 73 ----GIIIAPTRELAIQVSEELYRIG-QYSR-VHVLAVYGGQDISRQIRALKNHPQIIVG 126
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H+ TL L + +++DEAD + + G+ DD++A+L +PK Q +L SAT+
Sbjct: 127 TPGRILDHIHRGTLKL-DHVHTLVLDEADEMLNMGFIDDIEAILSTVPKDRQTMLFSATM 185
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLL-----KLNL 264
+ + + + NP +++++ + V + Y+I QE EK +L LL L +
Sbjct: 186 PDPIRKIAERFMNNPELVRVKAKEMT-VPSIEQYYIKVQEREKFDVLSRLLDVQSPDLAI 244
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
V G+T V+ + L+ YL + ++ +L R + +F G DV++A+D
Sbjct: 245 VFGRTKRRVDELANALTLRGYLAEG------IHGDLSQAKRLSVLRKFKDGKIDVLVATD 298
Query: 325 EKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384
A RG+D V++V N+D P D + Y+HR GRT R
Sbjct: 299 VAA-----------------------RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG 335
Query: 385 NQGTALSFVSLRE 397
+G A++FV+ RE
Sbjct: 336 REGMAMTFVTPRE 348
>gi|357152627|ref|XP_003576182.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 28-like isoform 1
[Brachypodium distachyon]
Length = 780
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 121/375 (32%), Positives = 192/375 (51%), Gaps = 30/375 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A LG+ +PT IQ IPL L +D+ A TGSGKT AF++P+++++ L + +V
Sbjct: 187 LRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLERL--LFRPKRV 244
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ L+L+P++EL Q+H I++L D++C I + VQE L PDIVVA
Sbjct: 245 PAIRVLILTPTRELAAQVHSMIEKLAQFT--DIRCCLIVGGLPTKVQEVALRSNPDIVVA 302
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + HL+ L I+I+DEAD + G+ ++ +++ PK Q +L SAT+
Sbjct: 303 TPGRIIDHLRNSLSVGLEDLAILILDEADRLLELGFSVEINELIRMCPKRRQTMLFSATM 362
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNL--VQG 267
+E++ L L L PV L+ +P++ + L + + +A LL L L +
Sbjct: 363 TEEIDELVKLSLNKPVRLEA-DPSLKRPATLTEEVVRIRRSREANQEAVLLALCLKTFKE 421
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
+ IIF T ++LK+ + L+ L R A+ F + D++IA+D A
Sbjct: 422 RVIIFSGTKHSAHRLKIMFGLSGMKAAELHGNLTQAQRLEALELFKKQEVDILIATDIAA 481
Query: 328 LETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQG 387
RGID V VINF P D++ Y+HR GRTAR +G
Sbjct: 482 -----------------------RGIDIVGVRTVINFACPRDVKTYLHRVGRTARAGREG 518
Query: 388 TALSFVSLREQDLMN 402
A++FV+ ++ L+
Sbjct: 519 YAVTFVTDDDRSLLK 533
>gi|156844737|ref|XP_001645430.1| hypothetical protein Kpol_534p53 [Vanderwaltozyma polyspora DSM
70294]
gi|160380651|sp|A7TJM9.1|DRS1_VANPO RecName: Full=ATP-dependent RNA helicase DRS1
gi|156116092|gb|EDO17572.1| hypothetical protein Kpol_534p53 [Vanderwaltozyma polyspora DSM
70294]
Length = 752
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 120/384 (31%), Positives = 199/384 (51%), Gaps = 35/384 (9%)
Query: 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII 81
+ TL L+ ++ LG+ +P+ IQ IP+ L KD++ A TGSGKT AF IP+I+++
Sbjct: 235 SLTLSRPVLKGLSDLGYTKPSPIQSATIPIGLSGKDIIAGAVTGSGKTAAFMIPIIERL- 293
Query: 82 NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQV---DVSVQEP 138
L + A+V T+ +VL+P++EL Q I ++ K + V + V ++ QE
Sbjct: 294 -LYKPAKVASTRVIVLTPTRELAIQ----IADVGKKIGKYVSGLTFGLAVGGLNLRQQEQ 348
Query: 139 LLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPK 198
L RPDIV+ATP R + H++ + S+E++++DEAD + G+++++ +L LP
Sbjct: 349 ELKTRPDIVIATPGRFIDHVRNSSSFNVDSVEVLVMDEADRMLEEGFQEELNEILTLLPS 408
Query: 199 LYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQED--EKATIL 256
Q +L SAT++ + SL L LR PV + + P A + + + D + A +
Sbjct: 409 KRQTLLFSATMNSRIKSLISLSLRKPVRIMINPPKQAAARLTQEFVRIRKRDHLKPALLF 468
Query: 257 YTLLKLNLV-QGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQG 315
Y + KL+ Q + ++FV + +KL++ L + L+ L + R +V F
Sbjct: 469 YLIRKLDGTGQKRIVVFVARKEMAHKLRIILGLLGMKVGELHGSLTQEQRLQSVNNF--- 525
Query: 316 LYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIH 375
K+LE P + T+ SRG+D + VINFD P + Y+H
Sbjct: 526 ----------KSLEVPVLICTDL----------ASRGLDIPKIEVVINFDMPKSYEIYLH 565
Query: 376 RAGRTARGKNQGTALSFVSLREQD 399
R GRTAR +G +++FV QD
Sbjct: 566 RVGRTARAGREGRSVTFVGESSQD 589
>gi|290968757|ref|ZP_06560294.1| ATP-dependent RNA helicase DeaD family protein [Megasphaera
genomosp. type_1 str. 28L]
gi|335049114|ref|ZP_08542124.1| DEAD-box ATP-dependent RNA helicase CshA [Megasphaera sp. UPII
199-6]
gi|290781053|gb|EFD93644.1| ATP-dependent RNA helicase DeaD family protein [Megasphaera
genomosp. type_1 str. 28L]
gi|333764226|gb|EGL41626.1| DEAD-box ATP-dependent RNA helicase CshA [Megasphaera sp. UPII
199-6]
Length = 520
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 114/370 (30%), Positives = 194/370 (52%), Gaps = 31/370 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+ +G+ EPT IQ +IP+ LQ D++ +A+TG+GKT AF IP+++KI+ + T +
Sbjct: 15 LQALNAMGFEEPTPIQAESIPVALQGADMIGQAQTGTGKTAAFGIPVLEKILKNEPTQSI 74
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
Q +VLSP++EL Q+ + + L +C+ ++ + I D+ Q L + P I+VA
Sbjct: 75 Q---TVVLSPTRELAMQVAEELNHLA-QCT-TIQALPIYGGQDMERQLRRLRKHPQIIVA 129
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + H+K T+DL S + +++DEAD + G+ DD+ ++ P Q +L SAT+
Sbjct: 130 TPGRLMDHMKRGTIDL-SDIHTIVLDEADEMLDMGFIDDINTIMSATPDTRQTLLFSATM 188
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+ + L L P I++++ + + + +I + +K +L LL L
Sbjct: 189 PKPIQQLAETFLHEPQIIRMKAKEVT-MDLIEQSYIETPDRQKFDVLCRLLDLQ-EPDLA 246
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
IIFV T + ++ L++ S+ ++ +L R + QF + D+++A+D A
Sbjct: 247 IIFVRTKRRVDEVAEALKKRGYSSEGIHGDLTQAKRDSVIRQFREKTIDILVATDVAA-- 304
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
RG+D V++V N+D P D + Y+HR GRT R G A
Sbjct: 305 ---------------------RGLDISGVTHVFNYDLPQDPESYVHRVGRTGRAGKSGEA 343
Query: 390 LSFVSLREQD 399
+FV RE +
Sbjct: 344 TTFVIPREME 353
>gi|374594345|ref|ZP_09667350.1| DEAD/DEAH box helicase domain protein [Gillisia limnaea DSM 15749]
gi|373872420|gb|EHQ04417.1| DEAD/DEAH box helicase domain protein [Gillisia limnaea DSM 15749]
Length = 380
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 119/370 (32%), Positives = 203/370 (54%), Gaps = 32/370 (8%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ 90
QA+A + P IQ+ IP IL KDVL TGSGKT + +P++ + N T++ +
Sbjct: 14 QALADQNYNRPYPIQKEVIPAILNGKDVLGIGPTGSGKTAGYVLPVLMNLRN-NTTSKNR 72
Query: 91 ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVAT 150
LVL P++EL Q+ + + +K + + V ++ Q L + +I+VAT
Sbjct: 73 HVNVLVLVPTRELAMQVREVFRLFGSALPERIKSLAVFGGVAINPQMKAL-QGVNILVAT 131
Query: 151 PARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLS 210
P R L +++ + L S++E +I+DEAD + + G++++M + LPK Q +L SATL+
Sbjct: 132 PGRLLELVESNAVKL-SNIETLILDEADKMLNLGFKEEMNRIFALLPKKRQNLLFSATLN 190
Query: 211 EDVLSLKHLILRNPVILKLEEPA--IAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGK 268
+DV ++K +ILR+P+++K+E + I ++QLA++ QE++K +L L+K N +
Sbjct: 191 DDVTNIKQIILRDPLVVKIEPESDTIDLITQLAYF---VQEEKKGQLLRYLIK-NKDLNQ 246
Query: 269 TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL 328
++F ++ K + L + I ++S+ KAR A+ +F G V++A+D
Sbjct: 247 VLVFTSSTYKADNVADKLRKNGIEAKAIHSKKSQKARTEALSKFKSGELRVLVATDL--- 303
Query: 329 ETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGT 388
+SRGID QF+ VIN++ P + YIHR GRT R ++ G
Sbjct: 304 --------------------ISRGIDIQFLPYVINYELPRSPKDYIHRIGRTGRAESPGE 343
Query: 389 ALSFVSLREQ 398
A+SF+S E+
Sbjct: 344 AISFISPEEE 353
>gi|322706702|gb|EFY98282.1| ATP-dependent RNA helicase dbp10 [Metarhizium anisopliae ARSEF 23]
Length = 892
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 142/455 (31%), Positives = 218/455 (47%), Gaps = 84/455 (18%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AIA+ G+ PT IQ + IPL+L KDV+ ARTGSGKTGAF IPMI+K L+ +
Sbjct: 95 LKAIARKGFSVPTPIQRKTIPLVLDRKDVVGMARTGSGKTGAFVIPMIEK---LRAHSGR 151
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
++AL+LSPS+EL Q K ++E D+K + + + Q + PDIV+A
Sbjct: 152 FGSRALILSPSRELAIQTLKVVKEFARGT--DLKAILLVGGDSLEEQFGYMAANPDIVIA 209
Query: 150 TPARALAHLKAK-TLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
TP R L HLK + +LDL SS++ V+ DEAD +F G+ + +L LP Q +L SAT
Sbjct: 210 TPGRFL-HLKVEMSLDL-SSIKYVVFDEADRLFEMGFATQLTEILHALPPSRQTLLFSAT 267
Query: 209 LSEDVLSLKHLILRNPVILKLE-EPAIAPVSQLAHYHILAQEDEKA--TILYTLLKLNL- 264
L ++ L++P +++L+ E ++P + A + + E E A IL+ ++K+ +
Sbjct: 268 LPASLVEFARAGLQDPSLVRLDAETKVSPDLESAFFSVKGAEKEGALLHILHDVIKMPMG 327
Query: 265 --------------------------VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNS 298
+ TIIF T L L++ + +
Sbjct: 328 TPEIAKQDSEKASKKRKRGESGSGKPTEHSTIIFTATKHHVEYLANVLQRAGFAVSHVYG 387
Query: 299 ELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFV 358
L AR + V F +G ++++ +D A RGID +
Sbjct: 388 SLDQTARRNQVEDFRRGRTNILVVTDVAA-----------------------RGIDIPVL 424
Query: 359 SNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQD----------------LMN 402
+NVIN+DFP + ++HR GRTAR +G + S V R+ D L
Sbjct: 425 ANVINYDFPSQPKIFVHRVGRTARAGQRGWSYSLV--RDSDAPYLLDLQLFLGRRLVLGQ 482
Query: 403 DGTALSF-----VSLREQDLMNDVNEYLMTNLHED 432
+G SF V ++DL+ E++ LHED
Sbjct: 483 EGEEPSFASDVIVGSLKRDLVESNVEWMNKLLHED 517
>gi|398803769|ref|ZP_10562787.1| DNA/RNA helicase, superfamily II [Polaromonas sp. CF318]
gi|398096022|gb|EJL86353.1| DNA/RNA helicase, superfamily II [Polaromonas sp. CF318]
Length = 481
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 114/376 (30%), Positives = 202/376 (53%), Gaps = 31/376 (8%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII---NLKQTA 87
+A+A++G+ T IQE+AIP++LQ KDV+ A+TG+GKT AF++P++Q+++ N +
Sbjct: 16 RAVAEMGYETMTPIQEQAIPVVLQGKDVMGAAQTGTGKTAAFSLPLLQRMMKHENPSTSP 75
Query: 88 QVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
+ALVL P++EL Q+ + + EL K + +++ + +D+ Q L + +++
Sbjct: 76 ARHPVRALVLLPTRELAVQVAQQV-ELYAKYT-NLRSTVVFGGMDMKPQTAELKKGVEVL 133
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
VATP R L H++AK L + +E V++DEAD + G+ D++ +L +LPK +L SA
Sbjct: 134 VATPGRLLDHIEAKNAVL-NQVEYVVLDEADRMLDIGFLPDLQRILSYLPKQRITLLFSA 192
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
T S ++ L L++PV +++ + H++ + +D++ + L + + Q
Sbjct: 193 TFSPEIKRLASSYLQDPVTIEVARSNATASTVEQHFYSVGADDKRRALHQILKERGMKQ- 251
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
+FVN+ C +L LE+ + T L+ + R A+ F +G D+++ +D A
Sbjct: 252 -AFVFVNSKLGCARLARSLEREGLKTAALHGDKSQDERLKALEAFKKGEVDLLVCTDVAA 310
Query: 328 LETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQG 387
RG+D + V V NFD P + + Y+HR GRT R G
Sbjct: 311 -----------------------RGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASG 347
Query: 388 TALSFVSLREQDLMND 403
A+SFV+ + L+ D
Sbjct: 348 LAVSFVASSDNRLVAD 363
>gi|169844029|ref|XP_001828736.1| ATP-dependent RNA helicase drs1 [Coprinopsis cinerea okayama7#130]
gi|116510107|gb|EAU93002.1| ATP-dependent RNA helicase drs1 [Coprinopsis cinerea okayama7#130]
Length = 754
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 112/391 (28%), Positives = 200/391 (51%), Gaps = 34/391 (8%)
Query: 11 TLIQVYFELPFTFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTG 70
T +Q+ P L+AI+ LG+ +PT IQ IP+ L KD++ A TGSGKT
Sbjct: 175 TFLQMNLSRPI--------LKAISSLGFTKPTPIQASTIPVALLGKDIVGNAVTGSGKTA 226
Query: 71 AFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQ 130
AF IPM+++++ ++ + T+ L+L P++EL Q ++ + L D++ +
Sbjct: 227 AFMIPMLERLLYREKGKRAAATRCLILLPTRELAVQCYEVGKRLGAHT--DIQFCLLVGG 284
Query: 131 VDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMK 190
+ + QE L +RPD+V+ATP R + H++ SL+I+++DEAD + S G+ D++
Sbjct: 285 LSLKAQEAALRQRPDVVLATPGRLIDHVRNSVGFNLDSLDILVLDEADRMLSEGFADELT 344
Query: 191 AVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQED 250
++K PK Q +L SAT+++ V L + L PV L ++ + + + +E
Sbjct: 345 EIIKACPKSRQTMLFSATMTDSVDELIKMSLNKPVRLFVDPKRSTARGLIQEFVRIRKES 404
Query: 251 EKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVY 310
++ +L L K + K IIFV + +++++ + L+ +L + R A+
Sbjct: 405 DRPAMLVALCK-QTYKHKVIIFVRSKKLAHQMRIVFSLLGMKCAELHGDLSQEQRLQALQ 463
Query: 311 QFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDI 370
F +G D ++A+D SRG+D + V V+N+D P +
Sbjct: 464 SFREGSVDYLMATDL-----------------------ASRGLDIKGVETVVNYDMPGQM 500
Query: 371 QCYIHRAGRTARGKNQGTALSFVSLREQDLM 401
Y+HR GRTAR +G +++ V ++ L+
Sbjct: 501 AQYLHRVGRTARAGRKGKSVTLVGEADRKLL 531
>gi|119897299|ref|YP_932512.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72]
gi|119669712|emb|CAL93625.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72]
Length = 494
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 110/376 (29%), Positives = 201/376 (53%), Gaps = 31/376 (8%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKI---INLKQTA 87
+A+A G+ EPT IQ +AIP+++ DV+ A+TG+GKT F +P++ ++ N +
Sbjct: 14 RAVADAGYTEPTPIQRQAIPIVIAGNDVMGGAQTGTGKTAGFTLPLLHRLARHANTSTSP 73
Query: 88 QVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
+T+AL+L+P++EL Q++++++ + C+ ++ +QE L +IV
Sbjct: 74 ARHQTRALILAPTRELAMQVYESVKTYSKHLPLRATCIYGGVDMNPQIQE--LRRGIEIV 131
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
+ATP R L H++ KT++L + +E++++DEAD + G+ D+K +L LP Q++L SA
Sbjct: 132 IATPGRLLDHVQQKTINL-TQVEMLVLDEADRMLDMGFIPDIKRILALLPASRQSLLFSA 190
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
T S+++ L +L+NP ++++ + + H ++ K +L LL+ +
Sbjct: 191 TFSDEIKKLADQMLKNPQLIEVARRNMVSETITHRVHPVS-SGMKRNLLAHLLR-HQPDT 248
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
+ ++FV+T C +L +LE+ IS ++ + + R + F G V++A+D A
Sbjct: 249 QALVFVDTKLVCGRLAHFLERHSISADSIHGDKSQQQRTETLEAFKAGKLRVLVATDVAA 308
Query: 328 LETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQG 387
RGID + VIN++ P + Y+HR GRT R +QG
Sbjct: 309 -----------------------RGIDIDELPYVINYELPHTAEDYVHRIGRTGRAGHQG 345
Query: 388 TALSFVSLREQDLMND 403
A+S V E+ L+ D
Sbjct: 346 NAVSLVCTEEKHLLAD 361
>gi|406911902|gb|EKD51608.1| hypothetical protein ACD_62C00220G0002 [uncultured bacterium]
Length = 421
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 132/446 (29%), Positives = 224/446 (50%), Gaps = 60/446 (13%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKI-INLKQTAQ 88
LQA+ G+ PT IQ +AIPLIL +D+L A+TG+GKT F +P++Q++ + K
Sbjct: 13 LQAVQGQGYSVPTPIQTKAIPLILNKQDILGSAQTGTGKTAGFTLPLLQRLMLEKKNGGG 72
Query: 89 VQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
+ +AL+L+P++EL Q+ K+++ T ++ + V++ Q L DIVV
Sbjct: 73 KRHIRALILTPTRELAAQVCKSVE--TYGKHLPLRSTVVFGGVNMEAQVRRLQYGVDIVV 130
Query: 149 ATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
ATP R L H+ +T+DL S ++++I+DEAD + G+ D+K ++ LPK Q +L SAT
Sbjct: 131 ATPGRLLDHIGQRTIDL-SRVDVLILDEADRMLDMGFIPDVKRIIALLPKGRQNLLFSAT 189
Query: 209 LSEDVLSLKHLILRNPVILKL--EEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQ 266
L+ +V L L NPV++++ + A VSQ+ H+ K +L ++ Q
Sbjct: 190 LTNEVKKLAMGFLNNPVVVEVAPQNTASELVSQVVHH---VDRRRKRELLSHIINTKKWQ 246
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
+ ++F T +L L IS ++ AR A+ QF + V++A+D
Sbjct: 247 -RVLVFTRTKHGANRLAEELSIDGISATAIHGNKTQAARTKALEQFKKEAVRVLVATDIA 305
Query: 327 ALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQ 386
A RG+D Q + +V+NFD P + Y+HR GRT R ++
Sbjct: 306 A-----------------------RGLDIQQMPHVVNFDLPHVPEDYVHRIGRTGRAGHE 342
Query: 387 GTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIK--------- 437
G ALS V + E +L+ + + +S+ + +L +E D I+
Sbjct: 343 GEALSLVCVDELNLLRNIERMLNISIPKMNLKG----------YEPDSSIRAEPIQRRGR 392
Query: 438 ---PYQFNLDEVKGFEYRAKDAWRSN 460
P++F KG ++++ ++R N
Sbjct: 393 PQAPWRF-----KGNAHKSRHSYRRN 413
>gi|328952772|ref|YP_004370106.1| DEAD/DEAH box helicase [Desulfobacca acetoxidans DSM 11109]
gi|328453096|gb|AEB08925.1| DEAD/DEAH box helicase domain protein [Desulfobacca acetoxidans DSM
11109]
Length = 415
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 196/383 (51%), Gaps = 38/383 (9%)
Query: 23 FTLFCIPLQAIAKL---GWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQK 79
F++F Q A + + PT IQ +AIPLI+Q DV+ A TG+GKT AF +P++ +
Sbjct: 3 FSIFDFHHQVTAGVVAARFRTPTPIQAKAIPLIMQGHDVVGLAHTGTGKTAAFVLPILHR 62
Query: 80 IINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL 139
++ + ++ +ALV++P++EL Q+H+ I L + ++ V I V + Q
Sbjct: 63 LMQ----GERRQVRALVIAPTRELAQQIHEAIGTLGSRTG--LRSVTIYGGVGFNPQVDK 116
Query: 140 LVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199
L +IVVA P R L H+ T+DL S+LE++++DE+D +F G+ D++ ++K +P
Sbjct: 117 LKRGAEIVVACPGRLLDHMNQGTIDL-SNLEVLVLDESDRMFDMGFLPDIRKIIKHVPTE 175
Query: 200 YQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAH-YHILAQEDEKATILYT 258
Q +L SAT+ +D+L L H +L+ PV +++ I P ++H + + Q + A +L
Sbjct: 176 RQTLLFSATMPDDILHLAHEVLKAPVTVQVNN--IGPAINVSHRLYPIKQHLKTALLLEL 233
Query: 259 LLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYD 318
L N +IF T + +L L + L L R + F G +
Sbjct: 234 LRHTNTE--SVLIFTRTKHRAKRLGEQLGKAGYRATSLQGNLSQGRRQAVMNGFRNGTFQ 291
Query: 319 VIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAG 378
+++A+D A RGID +S+VIN+D P I Y HR G
Sbjct: 292 ILVATDIAA-----------------------RGIDVTQISHVINYDMPDTIDAYTHRIG 328
Query: 379 RTARGKNQGTALSFVSLREQDLM 401
RT R G A +F++ ++D++
Sbjct: 329 RTGRNTKTGDAFTFITSEDEDMV 351
>gi|390570352|ref|ZP_10250619.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
terrae BS001]
gi|389937684|gb|EIM99545.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
terrae BS001]
Length = 486
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 114/384 (29%), Positives = 194/384 (50%), Gaps = 31/384 (8%)
Query: 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIIN 82
F L L+AIA+ G+ PT IQ AIP++L +DV+ A+TG+GKT F++P+IQ+++
Sbjct: 16 FGLHADILKAIAEQGYTTPTPIQAEAIPVVLGGRDVMGAAQTGTGKTAGFSLPIIQRLLP 75
Query: 83 LKQTAQV---QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL 139
L T+ +AL+L+P++EL +Q+ N+Q S ++ + VD++ Q
Sbjct: 76 LASTSASPARHPVRALILTPTRELADQVAANVQAYAKHTS--LRSAVVFGGVDMNPQSAE 133
Query: 140 LVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199
L +I++ATP R L H++ KT +L ++I+++DEAD + G+ D++ +L LP
Sbjct: 134 LRRGVEILIATPGRLLDHVQQKTANL-GQVQILVLDEADRMLDMGFLPDLQRILNLLPAE 192
Query: 200 YQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTL 259
Q +L SAT S ++ L LRNP +++ + + +A+ D+ ++ +
Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTATNVTQIVYEVAEGDKTGAVVKLI 252
Query: 260 LKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDV 319
L Q I+F N+ +L LE+ + ++ + R A+ F +G +
Sbjct: 253 RDRGLKQ--VIVFCNSKIGASRLARQLERDGVVATAIHGDRTQSERMQALDAFKRGEIEA 310
Query: 320 IIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGR 379
++A+D A RG+D + VINFD P + + Y+HR GR
Sbjct: 311 LVATDVAA-----------------------RGLDIAELPAVINFDLPFNAEDYVHRIGR 347
Query: 380 TARGKNQGTALSFVSLREQDLMND 403
T R G ALS S E+ + D
Sbjct: 348 TGRAGASGDALSLFSPNERKQLAD 371
>gi|357152629|ref|XP_003576183.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 28-like isoform 2
[Brachypodium distachyon]
Length = 770
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 121/375 (32%), Positives = 192/375 (51%), Gaps = 30/375 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A LG+ +PT IQ IPL L +D+ A TGSGKT AF++P+++++ L + +V
Sbjct: 177 LRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLERL--LFRPKRV 234
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ L+L+P++EL Q+H I++L D++C I + VQE L PDIVVA
Sbjct: 235 PAIRVLILTPTRELAAQVHSMIEKLAQFT--DIRCCLIVGGLPTKVQEVALRSNPDIVVA 292
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + HL+ L I+I+DEAD + G+ ++ +++ PK Q +L SAT+
Sbjct: 293 TPGRIIDHLRNSLSVGLEDLAILILDEADRLLELGFSVEINELIRMCPKRRQTMLFSATM 352
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNL--VQG 267
+E++ L L L PV L+ +P++ + L + + +A LL L L +
Sbjct: 353 TEEIDELVKLSLNKPVRLEA-DPSLKRPATLTEEVVRIRRSREANQEAVLLALCLKTFKE 411
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
+ IIF T ++LK+ + L+ L R A+ F + D++IA+D A
Sbjct: 412 RVIIFSGTKHSAHRLKIMFGLSGMKAAELHGNLTQAQRLEALELFKKQEVDILIATDIAA 471
Query: 328 LETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQG 387
RGID V VINF P D++ Y+HR GRTAR +G
Sbjct: 472 -----------------------RGIDIVGVRTVINFACPRDVKTYLHRVGRTARAGREG 508
Query: 388 TALSFVSLREQDLMN 402
A++FV+ ++ L+
Sbjct: 509 YAVTFVTDDDRSLLK 523
>gi|126442203|ref|YP_001058242.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 668]
gi|167901897|ref|ZP_02489102.1| DEAD/DEAH box helicase [Burkholderia pseudomallei NCTC 13177]
gi|237811490|ref|YP_002895941.1| dead/deah box helicase [Burkholderia pseudomallei MSHR346]
gi|126221696|gb|ABN85202.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 668]
gi|237505268|gb|ACQ97586.1| dead/deah box helicase [Burkholderia pseudomallei MSHR346]
Length = 481
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 114/384 (29%), Positives = 198/384 (51%), Gaps = 31/384 (8%)
Query: 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII- 81
F L L+AIA+ G+ PT IQ +AIP++L +DV+ A+TG+GKT +F++P+IQ+++
Sbjct: 16 FGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQRLLP 75
Query: 82 --NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL 139
N + +AL+L+P++EL +Q+ N+ ++ + VD++ Q
Sbjct: 76 QANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTP--LRSAVVFGGVDMNPQMAE 133
Query: 140 LVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199
L +I++ATP R L H++ KT +L ++I+++DEAD + G+ D++ +L LPK
Sbjct: 134 LRRGVEILIATPGRLLDHVQQKTANL-GQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192
Query: 200 YQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTL 259
Q +L SAT S ++ L LRNP +++ A + + +A+ D++A ++ +
Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKLI 252
Query: 260 LKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDV 319
+L Q I+F N+ +L +E+ I ++ + R A+ F +G +
Sbjct: 253 RDRSLKQ--VIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIEA 310
Query: 320 IIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGR 379
++A+D A RG+D + VINFD P + + Y+HR GR
Sbjct: 311 LVATDVAA-----------------------RGLDIAELPAVINFDLPFNAEDYVHRIGR 347
Query: 380 TARGKNQGTALSFVSLREQDLMND 403
T R G ALS S E+ + D
Sbjct: 348 TGRAGASGDALSLCSPNERKQLAD 371
>gi|169335734|ref|ZP_02862927.1| hypothetical protein ANASTE_02154 [Anaerofustis stercorihominis DSM
17244]
gi|169258472|gb|EDS72438.1| DEAD/DEAH box helicase [Anaerofustis stercorihominis DSM 17244]
Length = 510
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 125/383 (32%), Positives = 209/383 (54%), Gaps = 40/383 (10%)
Query: 22 TFTLFCIPL---QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQ 78
TF+ I L + + ++G+ PT IQ +AIP I DV+ +++TG+GKT AFAIP I+
Sbjct: 5 TFSELEINLDINRVLDEMGFTNPTDIQNKAIPAIRSGVDVIGKSQTGTGKTIAFAIPAIE 64
Query: 79 KIINLKQ---TAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSV 135
KI +++Q TAQV L++ P++EL Q + I++LT K ++K VDI V +
Sbjct: 65 KI-DIEQEKPTAQV-----LIICPTRELAQQGYAEIKKLT-KYMPEIKVVDIYGGVSMER 117
Query: 136 QEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKF 195
Q L ++ IV+ TP R HLK +TL L++ +++V++DEAD + S G+++D+ +LK
Sbjct: 118 QISKL-KKAHIVIGTPGRIKDHLKRRTLKLQN-IKMVVLDEADEMLSMGFKEDIDTILKT 175
Query: 196 LPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATI 255
P Q +L SAT+ ++++ L+NP+++++++ + V+++A +I + +K +
Sbjct: 176 APDTRQTVLFSATMPPAIMNIIDTFLKNPLLIQIDKEQVT-VNKIAQNYIDVPKGKKKEV 234
Query: 256 LYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQG 315
L LL TIIF NT L +L + S L+ ++ R + F
Sbjct: 235 LNLLLHY-YGSKLTIIFCNTKRMVDDLTKFLRKNGFSAECLHGDIRQNERSRVMSNFKNA 293
Query: 316 LYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIH 375
+++A+D A RGID + V VIN+D P + + YIH
Sbjct: 294 KTPILVATDVAA-----------------------RGIDVKDVEYVINYDIPQNSEYYIH 330
Query: 376 RAGRTARGKNQGTALSFVSLREQ 398
R GRTARG GT+++ + R+Q
Sbjct: 331 RIGRTARGGKTGTSITMTNNRKQ 353
>gi|424885553|ref|ZP_18309164.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WSM2012]
gi|393177315|gb|EJC77356.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WSM2012]
Length = 593
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 117/384 (30%), Positives = 195/384 (50%), Gaps = 35/384 (9%)
Query: 20 PFTFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQK 79
P TLF +LG PT IQE+AIPL+L+ +D++ A+TG+GKT AF +P+I+K
Sbjct: 58 PIVATLF--------QLGIETPTPIQEQAIPLLLEGRDLIGLAQTGTGKTAAFGLPLIEK 109
Query: 80 IINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL 139
++ ++ + T+ L+L+P++EL NQ+ +N+++ K V V V ++ Q+
Sbjct: 110 LLADERRPDNRTTRTLILAPTRELVNQIAENLKKFIRKSHLRVNVV--VGGVSINKQQLQ 167
Query: 140 LVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199
L + D++VATP R L + + + L +++ +++DEAD + G+ D++ + K +PK
Sbjct: 168 LEKGTDVLVATPGRLLDLVNRRAITL-TTVRYLVLDEADQMLDLGFVHDLRKIAKLVPKK 226
Query: 200 YQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTL 259
Q +L SAT+ + + L L +PV +++ P A + H + +++K +L
Sbjct: 227 RQTMLFSATMPKSIADLAGEYLVDPVTVEVTPPGKAADKVEQYVHFVGGKNDKTELLRKS 286
Query: 260 LKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDV 319
L N G+ I+F+ T KL +LE S ++ R A+ F G
Sbjct: 287 LTEN-PDGRAIVFLRTKHGAEKLMKHLENIGYSVASIHGNKSQGQRERALKAFRDGSIKT 345
Query: 320 IIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGR 379
+IA+D A RGID VS+V N+D P Y+HR GR
Sbjct: 346 LIATDVAA-----------------------RGIDIPAVSHVYNYDLPEVPDAYVHRIGR 382
Query: 380 TARGKNQGTALSFVSLREQDLMND 403
TAR G A++F + E L+ D
Sbjct: 383 TARAGRDGIAIAFCAPDEARLLRD 406
>gi|328869268|gb|EGG17646.1| putative RNA helicase [Dictyostelium fasciculatum]
Length = 860
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 124/397 (31%), Positives = 206/397 (51%), Gaps = 37/397 (9%)
Query: 14 QVYFELP-FTFTLFCIPLQ-AIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGA 71
+V +LP F PLQ A+AKLG+ +PT IQ +AIPLIL KD+L A TGSGKT A
Sbjct: 228 EVVMDLPTFEELHLSRPLQKAVAKLGYTQPTPIQAKAIPLILNGKDILASATTGSGKTAA 287
Query: 72 FAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQV 131
F +P++++++ T +V ++ L++ P++EL Q H + L +V+ + +
Sbjct: 288 FILPILERLLYRDATHRV--SRVLIVLPTRELALQCHSVFESLAQFT--NVQSCLVVGGL 343
Query: 132 DVSVQEPLLVERPDIVVATPARALAH-LKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMK 190
VQE L +RPD+++ATP R + H L A + L+ +EI+++DEAD + G++D++
Sbjct: 344 SNKVQEHELRKRPDVIIATPGRLIDHLLNAHDVGLE-DIEILVLDEADRLLDMGFKDELN 402
Query: 191 AVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHIL---- 246
V++ P Q +L SATLS+DV L L L PV + ++ A+ V+ +
Sbjct: 403 RVVESCPDGRQTLLFSATLSDDVKLLAKLSLSQPVRVAVD--ALFQVASTLEQEFIKIKP 460
Query: 247 AQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARC 306
Q ++ +L +L G I+F + + +++ + L + L+ +L + R
Sbjct: 461 GQLADRTAMLLSLCTRVFNGGGCIVFFRSKKEVHRIAILLGLSGLKVGELHGDLNQEQRF 520
Query: 307 HAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDF 366
A+ F G D ++A+D A RG+D V VIN++
Sbjct: 521 EALQSFRNGEVDFLLATDIAA-----------------------RGLDVLGVRTVINYNM 557
Query: 367 PLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND 403
P + YIHR GRTAR G + SF++ ++ ++ D
Sbjct: 558 PRSLAQYIHRVGRTARAGLAGRSCSFITEADRKILKD 594
>gi|398022356|ref|XP_003864340.1| ATP-dependent RNA helicase, putative [Leishmania donovani]
gi|322502575|emb|CBZ37658.1| ATP-dependent RNA helicase, putative [Leishmania donovani]
Length = 803
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 125/381 (32%), Positives = 191/381 (50%), Gaps = 37/381 (9%)
Query: 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII 81
+F L L AI K G+ PT IQ +AIP +LQ DV+ ARTGSGKT AF IPM+
Sbjct: 26 SFNLEKPLLDAILKQGFSVPTPIQRKAIPPMLQGNDVVAMARTGSGKTAAFLIPMLN--- 82
Query: 82 NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLV 141
LK A++ + LVLSP++EL Q+ +N + D++ + + Q LL
Sbjct: 83 TLKAHAKIVGIRGLVLSPTRELSLQILRN--GFALNKFLDLRFAALVGGDSMDQQFELLA 140
Query: 142 ERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQ 201
PD+VVATP R L ++ +L L +S+ +++DEAD +F G + + A+++ LP+ Q
Sbjct: 141 SNPDVVVATPGRLLHIMEEASLHL-TSVRCLVLDEADRLFELGLQPQIGAIMQKLPESCQ 199
Query: 202 AILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLK 261
L SAT+ + L NPV+++L+ + QL L + DEK L LLK
Sbjct: 200 RALFSATMPTVLAEFTSAGLHNPVVIRLDS-EMKLSDQLKQSAFLVRNDEKVAALIVLLK 258
Query: 262 LNLVQG-------KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQ 314
L G + +IFV + L++ L + IST ++ ++ +AR AV F +
Sbjct: 259 RVLHVGEAAANNAQALIFVESKFHVEFLQMILTHYSISTSAVHGQMDQEARRLAVRSFAK 318
Query: 315 GLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYI 374
V++ +D A RG+D + NV+NF FP + + ++
Sbjct: 319 RETSVMVVTDVAA-----------------------RGLDLPLLDNVVNFSFPFNPKLFV 355
Query: 375 HRAGRTARGKNQGTALSFVSL 395
HR GR AR GTA S ++
Sbjct: 356 HRVGRVARAGRSGTAYSIMTF 376
>gi|261408394|ref|YP_003244635.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
Y412MC10]
gi|329929405|ref|ZP_08283153.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF5]
gi|261284857|gb|ACX66828.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. Y412MC10]
gi|328936492|gb|EGG32937.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF5]
Length = 533
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 119/378 (31%), Positives = 199/378 (52%), Gaps = 35/378 (9%)
Query: 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIIN 82
F L LQAI +LG+ E T IQ ++IP+ L KD++ +A+TG+GKT AF +P+I KI
Sbjct: 7 FGLEPRVLQAITELGFEEATPIQSQSIPIALTGKDMIGQAQTGTGKTAAFGLPLIHKI-- 64
Query: 83 LKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVE 142
+ + AL+++P++EL Q+ + I +L+ + ++ + I D+ Q L
Sbjct: 65 ---AKEEERIVALIMTPTRELAIQVAEEIGKLSR--FKGIRSLAIYGGQDIGRQIRALKR 119
Query: 143 RPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQA 202
+P I++ TP R L H+ KT+ L ++ V++DEAD + G+ +D++++LK +P+ Q
Sbjct: 120 KPQIIIGTPGRLLDHINRKTIRL-DDVQTVVLDEADEMLDMGFMEDIQSILKLVPEERQT 178
Query: 203 ILASATLSEDVLSLKHLILRNPV-ILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLK 261
+L SAT+ ++ L L+ P + + + AP+ A+ + E +K L LL
Sbjct: 179 LLFSATMPANIQKLASQFLKEPEHVSVIPKHVSAPLIDQAYIEV--PERQKFEALSRLLD 236
Query: 262 LNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVII 321
+ + I+F T + +L L++ S L+ +L R + +F G DV++
Sbjct: 237 MESPE-LAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQHQRDTVMRKFRDGSIDVLV 295
Query: 322 ASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTA 381
A+D A RG+D V++V+NFD P D + Y+HR GRT
Sbjct: 296 ATDVAA-----------------------RGLDVSGVTHVVNFDLPQDPESYVHRIGRTG 332
Query: 382 RGKNQGTALSFVSLREQD 399
R +GTA SFV+ RE D
Sbjct: 333 RAGKEGTAWSFVTPREMD 350
>gi|186476836|ref|YP_001858306.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
phymatum STM815]
gi|184193295|gb|ACC71260.1| DEAD/DEAH box helicase domain protein [Burkholderia phymatum
STM815]
Length = 482
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 112/384 (29%), Positives = 198/384 (51%), Gaps = 31/384 (8%)
Query: 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIIN 82
F L L+AIA+ G+ PT IQ +AIP++L +DV+ A+TG+GKT +F++P+IQ+++
Sbjct: 16 FGLHADILKAIAEQGYTTPTPIQAKAIPVVLGGRDVMGAAQTGTGKTASFSLPIIQRLLP 75
Query: 83 LKQTAQV---QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL 139
L T+ +AL+L+P++EL +Q+ N+Q + ++ + VD++ Q
Sbjct: 76 LANTSASPARHPVRALILTPTRELADQVAANVQSYAKHTA--LRSAVVFGGVDMNPQSAE 133
Query: 140 LVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199
L +I++ATP R L H++ KT +L ++++++DEAD + G+ D++ +L LP
Sbjct: 134 LRRGVEILIATPGRLLDHVQQKTANL-GQVQMLVLDEADRMLDMGFLPDLQRILNLLPTE 192
Query: 200 YQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTL 259
Q +L SAT S ++ L LRNP +++ + + +A+ D+ ++ +
Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTATNVTQIVYEVAEGDKTGAVVQLI 252
Query: 260 LKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDV 319
+ +L Q I+F N+ +L LE+ + ++ + R A+ F +G +
Sbjct: 253 RERSLKQ--VIVFCNSKIGASRLARQLERDGVVATAIHGDRSQSERMQALDAFKRGEIEA 310
Query: 320 IIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGR 379
++A+D A RG+D + VINFD P + + Y+HR GR
Sbjct: 311 LVATDVAA-----------------------RGLDIAELPAVINFDLPFNAEDYVHRIGR 347
Query: 380 TARGKNQGTALSFVSLREQDLMND 403
T R G ALS S E+ + D
Sbjct: 348 TGRAGASGDALSLFSPNERKQLAD 371
>gi|76808776|ref|YP_332762.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1710b]
gi|76578229|gb|ABA47704.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
1710b]
Length = 559
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 114/384 (29%), Positives = 198/384 (51%), Gaps = 31/384 (8%)
Query: 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII- 81
F L L+AIA+ G+ PT IQ +AIP++L +DV+ A+TG+GKT +F++P+IQ+++
Sbjct: 93 FGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQRLLP 152
Query: 82 --NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL 139
N + +AL+L+P++EL +Q+ N+ ++ + VD++ Q
Sbjct: 153 QANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTP--LRSAVVFGGVDMNPQMAE 210
Query: 140 LVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199
L +I++ATP R L H++ KT +L ++I+++DEAD + G+ D++ +L LPK
Sbjct: 211 LRRGVEILIATPGRLLDHVQQKTANL-GQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 269
Query: 200 YQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTL 259
Q +L SAT S ++ L LRNP +++ A + + +A+ D++A ++ +
Sbjct: 270 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKLI 329
Query: 260 LKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDV 319
+L Q I+F N+ +L +E+ I ++ + R A+ F +G +
Sbjct: 330 RDRSLKQ--VIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIEA 387
Query: 320 IIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGR 379
++A+D A RG+D + VINFD P + + Y+HR GR
Sbjct: 388 LVATDVAA-----------------------RGLDIAELPAVINFDLPFNAEDYVHRIGR 424
Query: 380 TARGKNQGTALSFVSLREQDLMND 403
T R G ALS S E+ + D
Sbjct: 425 TGRAGASGDALSLCSPNERKQLAD 448
>gi|380486597|emb|CCF38600.1| ATP-dependent RNA helicase DBP10 [Colletotrichum higginsianum]
Length = 853
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 138/400 (34%), Positives = 202/400 (50%), Gaps = 62/400 (15%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AI K G+ PT IQ + IPLIL KDV+ ARTGSGKT AF IPMI+++ +A+V
Sbjct: 53 LRAITKKGFSVPTPIQRKTIPLILDRKDVVGMARTGSGKTAAFVIPMIERL--RAHSAKV 110
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T+AL++SPS+EL Q K ++E + D+KC+ + + Q ++ PDIV+A
Sbjct: 111 G-TRALIMSPSRELALQTLKVVKEFSKGT--DLKCILLVGGDSMEDQFSMMSSNPDIVIA 167
Query: 150 TPARALAHLKAK-TLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
TP R L HLK + LDL SS++ V+ DEAD +F G+ + +L LP Q++L SAT
Sbjct: 168 TPGRFL-HLKVEMGLDL-SSIKYVVFDEADRLFEMGFAAQLTEILYALPLSRQSLLFSAT 225
Query: 209 LSEDVLSLKHLILRNPVILKLE-EPAIAPVSQLAHYHILAQEDEKA--TILYTLLK---- 261
L ++ L++P +++L+ E I+P + A + + E E A IL L+K
Sbjct: 226 LPASLVEFARAGLQDPTLVRLDAETKISPDLESAFFSVKGAEKEAALLHILNDLIKMPQG 285
Query: 262 ------LNLVQGK----------------TIIFVNTVDKCYKLKLYLEQFKISTCVLNSE 299
L++V K TIIF T L L L + + +
Sbjct: 286 TPDGIPLDVVPSKKRKREGEGRGKPTEHSTIIFAATKHHVDYLALLLTKAGYAVSYVYGS 345
Query: 300 LPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVS 359
L +AR F G ++++ +D A RGID ++
Sbjct: 346 LDQEARRINTENFRNGRANILVVTDVAA-----------------------RGIDIPVLA 382
Query: 360 NVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQD 399
NVIN+DFP + ++HR GRTAR +G A S V RE D
Sbjct: 383 NVINYDFPPQPKVFVHRVGRTARAGQRGWAYSIV--RELD 420
>gi|366090606|ref|ZP_09456972.1| ATP-dependent RNA helicase [Lactobacillus acidipiscis KCTC 13900]
Length = 503
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 115/374 (30%), Positives = 199/374 (53%), Gaps = 37/374 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AI + G+ E T IQE IPL+L+ KDV+ +A+TG+GKT AF +P+IQ I K+ Q
Sbjct: 13 LKAIKRSGFEEATPIQEETIPLVLKRKDVIGQAQTGTGKTAAFGLPIIQNIDTSKRQIQ- 71
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
A+++SP++EL Q + + L+ V+ V + +Q L P I+V
Sbjct: 72 ----AVIISPTRELAIQTQEELFRLSKDKHGKVQVVYGGADIRRQIQN--LKNAPQILVG 125
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H++ KT+DL S + +++DEAD + G+ +D+++++ +PK Q +L SAT+
Sbjct: 126 TPGRLLDHIRRKTVDL-SHVRSLVLDEADEMLDMGFLEDIESIISSVPKERQTLLFSATI 184
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGK- 268
+ +L + + +P ++K++ + + Y++ A+E EK T+ ++ VQ
Sbjct: 185 PKQILKIGEKFMTDPSVVKIKSKELT-TDLVDQYYVKAREFEK---FDTMTRIIDVQAPE 240
Query: 269 -TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
TIIF T + +L LE + ++ +L + R + +F G D+++A+D A
Sbjct: 241 LTIIFGRTKRRVDELSKGLEARGYNAAGIHGDLTQQRRMTIMNKFKAGKLDILVATDVAA 300
Query: 328 LETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQG 387
RG+D V++V N+D P D + Y+HR GRT R + G
Sbjct: 301 -----------------------RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGHHG 337
Query: 388 TALSFVSLREQDLM 401
+++FV+ E D +
Sbjct: 338 VSVTFVTPNEMDYL 351
>gi|53718749|ref|YP_107735.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei K96243]
gi|53725492|ref|YP_103512.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344]
gi|67643786|ref|ZP_00442529.1| dead/deah box helicase [Burkholderia mallei GB8 horse 4]
gi|121599991|ref|YP_992380.1| DEAD/DEAH box helicase [Burkholderia mallei SAVP1]
gi|124383787|ref|YP_001026818.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229]
gi|126449417|ref|YP_001079898.1| DEAD/DEAH box helicase [Burkholderia mallei NCTC 10247]
gi|126454058|ref|YP_001065480.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106a]
gi|134281039|ref|ZP_01767748.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 305]
gi|167893438|ref|ZP_02480840.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 7894]
gi|217419830|ref|ZP_03451336.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 576]
gi|242317719|ref|ZP_04816735.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106b]
gi|386862473|ref|YP_006275422.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1026b]
gi|403517911|ref|YP_006652044.1| DEAD/DEAH box helicase [Burkholderia pseudomallei BPC006]
gi|418390012|ref|ZP_12967823.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 354a]
gi|418538110|ref|ZP_13103738.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1026a]
gi|418541611|ref|ZP_13107086.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1258a]
gi|418547854|ref|ZP_13112990.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1258b]
gi|418554032|ref|ZP_13118832.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 354e]
gi|52209163|emb|CAH35107.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
K96243]
gi|52428915|gb|AAU49508.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344]
gi|121228801|gb|ABM51319.1| DEAD/DEAH box helicase [Burkholderia mallei SAVP1]
gi|124291807|gb|ABN01076.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229]
gi|126227700|gb|ABN91240.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106a]
gi|126242287|gb|ABO05380.1| DEAD/DEAH box helicase [Burkholderia mallei NCTC 10247]
gi|134247345|gb|EBA47430.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 305]
gi|217397134|gb|EEC37150.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 576]
gi|238525219|gb|EEP88647.1| dead/deah box helicase [Burkholderia mallei GB8 horse 4]
gi|242140958|gb|EES27360.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106b]
gi|385348870|gb|EIF55466.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1026a]
gi|385357533|gb|EIF63583.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1258a]
gi|385359528|gb|EIF65484.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1258b]
gi|385370979|gb|EIF76201.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 354e]
gi|385375790|gb|EIF80532.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 354a]
gi|385659601|gb|AFI67024.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1026b]
gi|403073554|gb|AFR15134.1| DEAD/DEAH box helicase [Burkholderia pseudomallei BPC006]
Length = 482
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 114/384 (29%), Positives = 198/384 (51%), Gaps = 31/384 (8%)
Query: 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII- 81
F L L+AIA+ G+ PT IQ +AIP++L +DV+ A+TG+GKT +F++P+IQ+++
Sbjct: 16 FGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQRLLP 75
Query: 82 --NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL 139
N + +AL+L+P++EL +Q+ N+ ++ + VD++ Q
Sbjct: 76 QANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTP--LRSAVVFGGVDMNPQMAE 133
Query: 140 LVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199
L +I++ATP R L H++ KT +L ++I+++DEAD + G+ D++ +L LPK
Sbjct: 134 LRRGVEILIATPGRLLDHVQQKTANL-GQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192
Query: 200 YQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTL 259
Q +L SAT S ++ L LRNP +++ A + + +A+ D++A ++ +
Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKLI 252
Query: 260 LKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDV 319
+L Q I+F N+ +L +E+ I ++ + R A+ F +G +
Sbjct: 253 RDRSLKQ--VIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIEA 310
Query: 320 IIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGR 379
++A+D A RG+D + VINFD P + + Y+HR GR
Sbjct: 311 LVATDVAA-----------------------RGLDIAELPAVINFDLPFNAEDYVHRIGR 347
Query: 380 TARGKNQGTALSFVSLREQDLMND 403
T R G ALS S E+ + D
Sbjct: 348 TGRAGASGDALSLCSPNERKQLAD 371
>gi|366166269|ref|ZP_09466024.1| DEAD/DEAH box helicase [Acetivibrio cellulolyticus CD2]
Length = 544
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 114/367 (31%), Positives = 197/367 (53%), Gaps = 32/367 (8%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ 90
+AIA +G+ E T IQ + IP IL+ D++ +A+TG+GKT AF IP I+ + + QV
Sbjct: 17 KAIADMGFEEATPIQSQTIPQILKGIDLIGQAQTGTGKTCAFGIPAIEMLDPQNEGIQV- 75
Query: 91 ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVAT 150
L+LSP++EL Q+ + +++++ K +K + + + Q L +RP I++ T
Sbjct: 76 ----LILSPTRELAIQISEELRDVS-KYKEGIKILPVYGGQPIDRQIAALKKRPQIIIGT 130
Query: 151 PARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLS 210
P R + H++ +TL L + L+++I+DEAD + + G+ +D+ +L+ +P+ Q IL SAT+
Sbjct: 131 PGRIMDHMRRRTLKL-ADLKMLILDEADEMLNMGFREDIDTILEKVPEEKQTILFSATMP 189
Query: 211 EDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTI 270
+++L L L+NP+ +K + V + +++ + K IL L+ N + G ++
Sbjct: 190 KEILDLTSKYLKNPLHIKAAHKQMT-VPSIEQFYLEVSQSSKLEILSRLIDANNI-GLSL 247
Query: 271 IFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALET 330
+F NT + +L L+ ST L+ ++ R + +F +G D++IA+D A
Sbjct: 248 VFCNTKRQVDELTSSLQSRGYSTEALHGDMKQDQRNRVMTKFRKGQIDILIATDVAA--- 304
Query: 331 PQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTAL 390
RGID V V N+D P D + Y+HR GRT R G +
Sbjct: 305 --------------------RGIDVDNVEAVFNYDLPSDEEYYVHRIGRTGRAGKTGKSF 344
Query: 391 SFVSLRE 397
+FV RE
Sbjct: 345 TFVVGRE 351
>gi|313682743|ref|YP_004060481.1| dead/deah box helicase domain-containing protein [Sulfuricurvum
kujiense DSM 16994]
gi|313155603|gb|ADR34281.1| DEAD/DEAH box helicase domain protein [Sulfuricurvum kujiense DSM
16994]
Length = 431
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 117/373 (31%), Positives = 199/373 (53%), Gaps = 30/373 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AI G+ PT +Q +AIP IL+ +D+L A+TG+GKT F +P++Q + + KQ
Sbjct: 13 LKAINDQGYTTPTPVQAQAIPFILEGRDMLAGAQTGTGKTAGFTLPLLQILSDRKQPKTH 72
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
++ +AL+L+P++EL Q+ ++++ +K I V ++ Q +L DI++A
Sbjct: 73 RKIRALILTPTRELAAQVGESVKLYGKYLP--LKSAVIFGGVGINPQITMLRNGVDILIA 130
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H+ T+DL S +EI ++DEAD + G+ D++ V+ LPK+ Q +L SAT
Sbjct: 131 TPGRLLDHVGQGTVDL-SGVEIFVLDEADRMLDMGFIRDIRRVITILPKVRQNLLFSATY 189
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYH-ILAQEDEKATILYTLLKLNLVQGK 268
S+D+ +L + +LRNP +++ + S+L IL K+++L L+ + + +
Sbjct: 190 SDDIKTLANTLLRNPAEVEVARRNTS--SELVKQSVILVDCKRKSSLLGELIGKHKWE-Q 246
Query: 269 TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL 328
++F T KL YL++ I+ ++ AR A+ F + V++A+D A
Sbjct: 247 VLVFTRTKHGANKLTEYLQKIGITAAAIHGNKSQSARTKALDDFKRSSVRVLVATDIAA- 305
Query: 329 ETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGT 388
RGID + +V+NF+ P + Y+HR GRT R +G
Sbjct: 306 ----------------------RGIDIDALPHVVNFELPNIAEDYVHRIGRTGRAGCEGE 343
Query: 389 ALSFVSLREQDLM 401
ALS V + E D +
Sbjct: 344 ALSLVCVDEADYL 356
>gi|424896364|ref|ZP_18319938.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WSM2297]
gi|393180591|gb|EJC80630.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WSM2297]
Length = 593
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 117/384 (30%), Positives = 194/384 (50%), Gaps = 35/384 (9%)
Query: 20 PFTFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQK 79
P TLF +LG PT IQE+AIPL+L+ +D++ A+TG+GKT AF +P+I+K
Sbjct: 58 PIVATLF--------QLGIETPTPIQEQAIPLLLEGRDLIGLAQTGTGKTAAFGLPLIEK 109
Query: 80 IINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL 139
++ ++ + T+ L+L+P++EL NQ+ N+++ K V V V ++ Q+
Sbjct: 110 LLADERRPDNRTTRTLILAPTRELVNQIADNLKKFIRKSHLRVNVV--VGGVSINKQQLQ 167
Query: 140 LVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199
L + D++VATP R L + + + L +++ +++DEAD + G+ D++ + K +PK
Sbjct: 168 LEKGTDVLVATPGRLLDLVNRRAITL-TTVRYLVLDEADQMLDLGFVHDLRKIAKLVPKK 226
Query: 200 YQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTL 259
Q +L SAT+ + + L L +PV +++ P A + H + +++K +L
Sbjct: 227 RQTMLFSATMPKSIADLAGEYLVDPVTVEVTPPGKAADKVEQYVHFVGGKNDKTELLRKS 286
Query: 260 LKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDV 319
L N G+ I+F+ T KL +LE S ++ R A+ F G
Sbjct: 287 LTEN-PDGRAIVFLRTKHGAEKLMKHLENIGYSVASIHGNKSQGQRERALKAFRDGSIKT 345
Query: 320 IIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGR 379
+IA+D A RGID VS+V N+D P Y+HR GR
Sbjct: 346 LIATDVAA-----------------------RGIDIPAVSHVYNYDLPEVPDAYVHRIGR 382
Query: 380 TARGKNQGTALSFVSLREQDLMND 403
TAR G A++F + E L+ D
Sbjct: 383 TARAGRDGIAIAFCAPDEARLLRD 406
>gi|146099084|ref|XP_001468551.1| putative ATP-dependent RNA helicase [Leishmania infantum JPCM5]
gi|134072919|emb|CAM71636.1| putative ATP-dependent RNA helicase [Leishmania infantum JPCM5]
Length = 803
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 125/381 (32%), Positives = 191/381 (50%), Gaps = 37/381 (9%)
Query: 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII 81
+F L L AI K G+ PT IQ +AIP +LQ DV+ ARTGSGKT AF IPM+
Sbjct: 26 SFNLEKPLLDAILKQGFSVPTPIQRKAIPPMLQGNDVVAMARTGSGKTAAFLIPMLN--- 82
Query: 82 NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLV 141
LK A++ + LVLSP++EL Q+ +N + D++ + + Q LL
Sbjct: 83 TLKAHAKIVGIRGLVLSPTRELSLQILRN--GFALNKFLDLRFAALVGGDSMDQQFELLA 140
Query: 142 ERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQ 201
PD+VVATP R L ++ +L L +S+ +++DEAD +F G + + A+++ LP+ Q
Sbjct: 141 SNPDVVVATPGRLLHIMEEASLHL-TSVRCLVLDEADRLFELGLQPQIGAIMQKLPESCQ 199
Query: 202 AILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLK 261
L SAT+ + L NPV+++L+ + QL L + DEK L LLK
Sbjct: 200 RALFSATMPTVLAEFTSAGLHNPVVIRLDS-EMKLSDQLKQSAFLVRNDEKVAALIVLLK 258
Query: 262 LNLVQG-------KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQ 314
L G + +IFV + L++ L + IST ++ ++ +AR AV F +
Sbjct: 259 RVLHVGEAAANNAQALIFVESKFHVEFLQMILTHYSISTSAVHGQMDQEARRLAVRSFAK 318
Query: 315 GLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYI 374
V++ +D A RG+D + NV+NF FP + + ++
Sbjct: 319 RETSVMVVTDVAA-----------------------RGLDLPLLDNVVNFSFPFNPKLFV 355
Query: 375 HRAGRTARGKNQGTALSFVSL 395
HR GR AR GTA S ++
Sbjct: 356 HRVGRVARAGRSGTAYSIMTF 376
>gi|381160579|ref|ZP_09869811.1| DNA/RNA helicase, superfamily II [Thiorhodovibrio sp. 970]
gi|380878643|gb|EIC20735.1| DNA/RNA helicase, superfamily II [Thiorhodovibrio sp. 970]
Length = 438
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 119/376 (31%), Positives = 190/376 (50%), Gaps = 34/376 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+ G+ EPT IQ +AIP IL +DV+ A+TG+GKT AF +P++Q++ Q A
Sbjct: 13 LRAVTARGYTEPTPIQNQAIPAILAGRDVMAGAQTGTGKTAAFTLPLLQRLSQSGQQASA 72
Query: 90 Q--ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
+ + +ALVL+P++EL Q+ +++ ++ + I V + Q L DI+
Sbjct: 73 RSPQPRALVLTPTRELAAQVGESVSAYGQYLP--LRALQIFGGVGMGPQITALRRGVDIL 130
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
VATP R L H+ LDL +E++++DEAD + G+ ++ VLK LP Q +L SA
Sbjct: 131 VATPGRLLDHVGQGNLDL-GHVELLVLDEADRMLDMGFMPAIRRVLKLLPARRQNLLFSA 189
Query: 208 TLSEDVLSLKHLILRNPVILKL--EEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLV 265
T S D+ L +L +P+ +++ A V QLAH + K +L L+
Sbjct: 190 TYSRDIEQLATGLLNDPLRIEVARRNTAAETVRQLAHP---VERGHKRALLSHLIASGGW 246
Query: 266 QGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE 325
+T++F T +L LE+ IS ++ AR A+ F +G ++A+D
Sbjct: 247 D-QTLVFTRTKHGANRLAQQLERDGISAAAIHGNKSQSARTRALADFKRGAVRTLVATDI 305
Query: 326 KALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKN 385
A RG+D + + +V+NF+ P + Y+HR GRT R
Sbjct: 306 AA-----------------------RGLDIERLPHVVNFELPNVAEDYVHRIGRTGRAGE 342
Query: 386 QGTALSFVSLREQDLM 401
GTA+S VS E L+
Sbjct: 343 SGTAVSLVSPEEGSLL 358
>gi|347548270|ref|YP_004854598.1| putative ATP-dependent RNA helicase [Listeria ivanovii subsp.
ivanovii PAM 55]
gi|346981341|emb|CBW85290.1| Putative ATP-dependent RNA helicase [Listeria ivanovii subsp.
ivanovii PAM 55]
Length = 522
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 110/373 (29%), Positives = 201/373 (53%), Gaps = 43/373 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++++ ++G+ E T IQE+ IPL L KD++ +A+TG+GKT AF +PMI KI Q
Sbjct: 14 VKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHKIDQKSNNVQ- 72
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
AL+++P++EL Q+ + + +L+ + V+ + + D+S Q L ++P IVV
Sbjct: 73 ----ALIIAPTRELAIQVSEELYKLS--YDKHVRVLAVYGGSDISRQIRSLKKKPQIVVG 126
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H+ +TL L ++E +++DEAD + + G+ DD++ +LK +P Q +L SAT+
Sbjct: 127 TPGRILDHINRRTLKL-DNVETIVLDEADEMLNMGFIDDIETILKEVPAERQTLLFSATM 185
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLL-----KLNL 264
+ + + + +P +++++ + + + + + E EK +L LL +L +
Sbjct: 186 PDPIRRIGERFMHSPELIRIKAKEMTAL-LIEQFFVKVHEKEKFDVLSRLLDVQAPELAI 244
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
V G+T V+ + + ++ Y+ + ++ +L R + +F +G DV++A+D
Sbjct: 245 VFGRTKRRVDELSRALDMRGYVAEG------IHGDLTQAKRMSVLRKFKEGKIDVLVATD 298
Query: 325 EKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384
A RG+D V++V N+D P D + Y+HR GRT R
Sbjct: 299 VAA-----------------------RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG 335
Query: 385 NQGTALSFVSLRE 397
+G A++FV RE
Sbjct: 336 KEGMAITFVQPRE 348
>gi|254259821|ref|ZP_04950875.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1710a]
gi|254218510|gb|EET07894.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1710a]
Length = 486
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 114/384 (29%), Positives = 198/384 (51%), Gaps = 31/384 (8%)
Query: 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII- 81
F L L+AIA+ G+ PT IQ +AIP++L +DV+ A+TG+GKT +F++P+IQ+++
Sbjct: 16 FGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQRLLP 75
Query: 82 --NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL 139
N + +AL+L+P++EL +Q+ N+ ++ + VD++ Q
Sbjct: 76 QANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTP--LRSAVVFGGVDMNPQMAE 133
Query: 140 LVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199
L +I++ATP R L H++ KT +L ++I+++DEAD + G+ D++ +L LPK
Sbjct: 134 LRRGVEILIATPGRLLDHVQQKTANL-GQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192
Query: 200 YQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTL 259
Q +L SAT S ++ L LRNP +++ A + + +A+ D++A ++ +
Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKLI 252
Query: 260 LKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDV 319
+L Q I+F N+ +L +E+ I ++ + R A+ F +G +
Sbjct: 253 RDRSLKQ--VIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIEA 310
Query: 320 IIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGR 379
++A+D A RG+D + VINFD P + + Y+HR GR
Sbjct: 311 LVATDVAA-----------------------RGLDIAELPAVINFDLPFNAEDYVHRIGR 347
Query: 380 TARGKNQGTALSFVSLREQDLMND 403
T R G ALS S E+ + D
Sbjct: 348 TGRAGASGDALSLCSPNERKQLAD 371
>gi|319795121|ref|YP_004156761.1| dead/deah box helicase domain-containing protein [Variovorax
paradoxus EPS]
gi|315597584|gb|ADU38650.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus EPS]
Length = 496
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 110/367 (29%), Positives = 198/367 (53%), Gaps = 31/367 (8%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII---NLKQTA 87
+A+A++G+ T IQE+AIP++L +DV+ A+TG+GKT AF++P++Q+++ N +
Sbjct: 16 RAVAEMGYETMTPIQEQAIPVVLSGQDVMGAAQTGTGKTAAFSLPLLQRMLKHENASTSP 75
Query: 88 QVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
+ALVL P++EL +Q+ + ++ L K + +++ + +D+ Q L + +++
Sbjct: 76 ARHPVRALVLLPTRELADQVAQQVK-LYAKYT-NLRSTVVFGGIDMKPQTLELKKGVEVL 133
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
VATP R L H++AK L + +E V++DEAD + G+ D++ +L +LPK +L SA
Sbjct: 134 VATPGRLLDHIEAKNAVL-NQVEYVVLDEADRMLDIGFLPDLQRILSYLPKQRTTLLFSA 192
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
T S ++ L L+NPV +++ P + H++ ++ +D++ + + + + Q
Sbjct: 193 TFSPEIKRLAGSYLQNPVTIEVARPNETASTVEQHFYSVSDDDKRRALKQIVKQRGITQ- 251
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
+FVN+ C +L LE+ + T L+ + R A+ F G D+++ +D A
Sbjct: 252 -AFVFVNSKLGCARLARSLERDGLRTTALHGDKSQDERLKALASFKAGEVDLLVCTDVAA 310
Query: 328 LETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQG 387
RG+D + V V NFD P + + Y+HR GRT R G
Sbjct: 311 -----------------------RGLDIKDVPAVFNFDIPFNAEDYVHRIGRTGRAGASG 347
Query: 388 TALSFVS 394
A+SF S
Sbjct: 348 LAVSFAS 354
>gi|347751920|ref|YP_004859485.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
coagulans 36D1]
gi|347584438|gb|AEP00705.1| DEAD/DEAH box helicase domain protein [Bacillus coagulans 36D1]
Length = 475
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 112/373 (30%), Positives = 194/373 (52%), Gaps = 43/373 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+ ++G+ E + IQ IPL +Q KD++ +A+TG+GKT AF IP+I+KI + + Q
Sbjct: 14 LKAVKRMGFEEASPIQAATIPLTMQGKDIIGQAQTGTGKTAAFGIPLIEKIDHRSRNIQ- 72
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
++++P++EL Q+ + + + V + + D+S Q L P I+V
Sbjct: 73 ----GIIIAPTRELAIQVSEELYRIGQDSR--VHVLAVYGGQDISRQIRALKNHPQIIVG 126
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H+ TL L + +++DEAD + + G+ DD++A+L +PK Q +L SAT+
Sbjct: 127 TPGRILDHIHRGTLKL-DHVHTLVLDEADEMLNMGFIDDIEAILSTVPKDRQTMLFSATM 185
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLL-----KLNL 264
+ + + + NP +++++ + V + Y++ QE EK +L LL L +
Sbjct: 186 PDPIRKIAERFMNNPELVRVKAKEMT-VPSIEQYYVKVQEREKFDVLSRLLDVQSPDLAI 244
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
V G+T V+ + L+ YL + ++ +L R + +F G DV++A+D
Sbjct: 245 VFGRTKRRVDELANALNLRGYLAEG------IHGDLSQAKRLSVLRKFKDGKIDVLVATD 298
Query: 325 EKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384
A RG+D V++V N+D P D + Y+HR GRT R
Sbjct: 299 VAA-----------------------RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG 335
Query: 385 NQGTALSFVSLRE 397
+G A++FV+ RE
Sbjct: 336 REGMAMTFVTPRE 348
>gi|73540602|ref|YP_295122.1| helicase [Ralstonia eutropha JMP134]
gi|72118015|gb|AAZ60278.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Ralstonia
eutropha JMP134]
Length = 537
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 115/390 (29%), Positives = 203/390 (52%), Gaps = 37/390 (9%)
Query: 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII 81
+F L L+A+++ G+ +PT IQ +AIP++L KDV+ A+TG+GKT FA+P+IQ+++
Sbjct: 58 SFGLDARILRALSEQGYTKPTPIQAQAIPVVLLGKDVMGAAQTGTGKTAGFALPIIQRLL 117
Query: 82 NLKQTAQV---QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEP 138
+ + +AL+L+P++EL +Q++ N+ D++ + VD++ Q
Sbjct: 118 PMASASASPARHPVRALMLTPTRELADQVYDNVARYAKHT--DLRSTVVFGGVDMNPQTD 175
Query: 139 LLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPK 198
L +I+VATP R L H++ K+++L S ++++++DEAD + G+ D++ ++ LP
Sbjct: 176 ALRRGVEILVATPGRLLDHVQQKSVNL-SQVQMLVLDEADRMLDMGFLPDLQRIINLLPA 234
Query: 199 LYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIA--PVSQLAHYHILAQEDEKATIL 256
Q +L SAT S ++ L L+ PV +++ V Q+ Y + ++ +K +
Sbjct: 235 QRQTLLFSATFSPEIKRLAASYLKQPVTIEVARSNSTNENVRQMV-YQV--EDGQKQAAV 291
Query: 257 YTLLKLNLVQG---KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFN 313
LL+ QG + I+FVN+ C +L +LE+ I+ ++ + R + F
Sbjct: 292 VHLLRQRAEQGLSKQCIVFVNSKIGCSRLARHLEREGINAAAIHGDKTQTERMQTLEGFK 351
Query: 314 QGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCY 373
G D ++A+D A RG+D + VINFD P + Y
Sbjct: 352 NGTIDALVATDVAA-----------------------RGLDIADMPCVINFDLPFSAEDY 388
Query: 374 IHRAGRTARGKNQGTALSFVSLREQDLMND 403
+HR GRT R G ALS ++ L+ D
Sbjct: 389 VHRIGRTGRAGASGDALSIFVPGDERLLTD 418
>gi|440638773|gb|ELR08692.1| ATP-dependent rRNA helicase rrp3 [Geomyces destructans 20631-21]
Length = 485
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 118/365 (32%), Positives = 188/365 (51%), Gaps = 33/365 (9%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ 90
+A LG+ PT IQ+ +IP L +D++ A TGSGKT AFA+P++Q +++ + Q
Sbjct: 72 EACESLGYKSPTPIQQESIPPALAGRDLIGLAETGSGKTAAFALPILQALLD-----KPQ 126
Query: 91 ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVAT 150
LVL+P++EL Q+ K+ + L + S V+C I +D+ Q L ++P I+VAT
Sbjct: 127 PLFGLVLAPTRELAYQISKSFEGLGILIS--VRCAVIVGGMDMVTQSIALGKKPHIIVAT 184
Query: 151 PARALAHLK-AKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
P R L HL+ K L+ +L+ +++DEAD + + + +LK LP+ + L SAT+
Sbjct: 185 PGRLLDHLENTKGFSLR-ALKYLVMDEADRLLDLDFGPILDKILKVLPRERRTYLFSATM 243
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
S V SL+ LR+P+ +++ VS L ++ K T L LL +
Sbjct: 244 SSKVESLQRASLRDPLRVQISTNKYQTVSTLLQSYLFIPHPHKDTYLIYLLN-DFAGQSA 302
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F TV++ +L + L L+ +L AR A+ +F G ++++A+D A
Sbjct: 303 IVFTRTVNETQRLAILLRTLGFGAIPLHGQLSQSARLGALNKFRAGSREILVATDVAA-- 360
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
RG+D V V+N+D P D + YIHR GRTAR G A
Sbjct: 361 ---------------------RGLDIPSVDVVLNYDLPPDSKTYIHRVGRTARAGKSGHA 399
Query: 390 LSFVS 394
+S V+
Sbjct: 400 ISIVT 404
>gi|388580558|gb|EIM20872.1| DEAD-domain-containing protein [Wallemia sebi CBS 633.66]
Length = 801
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 130/437 (29%), Positives = 229/437 (52%), Gaps = 50/437 (11%)
Query: 22 TFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQ 78
TFT + L+AI+ LG+ PT IQ+ +P+ L KDV+ +A TGSGKT AF +P+++
Sbjct: 206 TFTSLGLSRPILKAISGLGFTHPTPIQKTVMPVALAGKDVVGQAVTGSGKTAAFILPVLE 265
Query: 79 KII-NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQE 137
+++ K +++ ET+ LVL P++EL Q + Q L+ K D+ + + +QE
Sbjct: 266 RLMYRPKTSSKGGETRVLVLCPTRELAQQCFEVGQSLS-KFMGDISFCLCVGGLSLKLQE 324
Query: 138 PLLVERPDIVVATPARALAHLKAK---TLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLK 194
L +RPD+V+ATP R + H++ TLD +L+I+I+DEAD + G++D++ ++K
Sbjct: 325 QQLKQRPDVVIATPGRLIDHVRNSPSFTLD---ALDILIMDEADRMLEDGFKDELDEIVK 381
Query: 195 FLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQED---- 250
PK Q +L SAT+++ V L L L PV L +P + L + + +
Sbjct: 382 ECPKNRQTMLFSATMTDKVDELVRLSLNKPVRL-FVDPKKSTAKGLTQEFVRIRSNSKND 440
Query: 251 --EKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHA 308
E+ L +L + Q +TIIF + +++++ +++ L+ +L + R +A
Sbjct: 441 LKERTATLLSLCRRTFKQ-RTIIFFRSKALAHRMRIMFGLMELNAEELHGDLSQEQRLNA 499
Query: 309 VYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPL 368
+ +F D ++A+D SRG+D + V VINFD P
Sbjct: 500 LERFKNQKSDYLLATDL-----------------------ASRGLDIKGVETVINFDLPN 536
Query: 369 DIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND----GTALSFVSLREQ----DLMND 420
I+ Y+HR GRTAR G ++S + ++ ++ + +A S S++ + D+++D
Sbjct: 537 QIEIYLHRVGRTARAGTSGRSVSLIGETDRKMLKNIVKRSSAQSTDSIKHRIVPTDVLSD 596
Query: 421 VNEYLMTNLHEDDFIIK 437
V E + + + D I+K
Sbjct: 597 VAELVESLQDQIDEILK 613
>gi|212558432|gb|ACJ30886.1| Helicase, DEAD box [Shewanella piezotolerans WP3]
Length = 410
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 118/368 (32%), Positives = 190/368 (51%), Gaps = 30/368 (8%)
Query: 27 CIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQT 86
C+ L+++ +G +PT IQ++ IP+ ++ +D+L RA TG+GKT +F +P +Q II+ +
Sbjct: 14 CL-LESLKAMGHNKPTTIQQQTIPVAMEQRDILARAPTGTGKTASFLLPALQHIIDFPRR 72
Query: 87 AQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDI 146
Q + LVL+P++EL +Q+H+ L D+ I+ V + QE L + DI
Sbjct: 73 FGGQ-ARVLVLTPTRELASQIHRYASHLATDLDLDISI--ITGGVPYAPQEEALKKNVDI 129
Query: 147 VVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
+VATP R + +L K L +E+++IDEAD + G+ ++ + Q +L S
Sbjct: 130 LVATPGRLMEYLD-KGLFNAEEVEVLVIDEADRMLDMGFSAVVETIAIESVGRKQTMLFS 188
Query: 207 ATL-SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLV 265
ATL DV H +L NPV L+ E P HI + K +LY +L+ V
Sbjct: 189 ATLEGSDVGRFSHQLLSNPVKLEAEAPRSEKAKIHQWVHIADDREHKFALLYAILQQEEV 248
Query: 266 QGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE 325
+ + I+FV T + L L++ I+ + ++ KAR A+ +F +G +V++A+D
Sbjct: 249 E-RAIVFVKTREAVASLDGLLQKQGITCSFMRGDMEQKARFQALGRFTKGEVNVLLATDV 307
Query: 326 KALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKN 385
A RGID +++VINFD P Y+HR GRT R
Sbjct: 308 AA-----------------------RGIDVDDITHVINFDMPRSADTYVHRIGRTGRAGA 344
Query: 386 QGTALSFV 393
+GTA+S V
Sbjct: 345 KGTAISLV 352
>gi|259147982|emb|CAY81231.1| Drs1p [Saccharomyces cerevisiae EC1118]
Length = 754
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 116/376 (30%), Positives = 200/376 (53%), Gaps = 35/376 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ +A LG+++P+ IQ IP+ L KD++ A TGSGKT AF IP+I+++ L + A++
Sbjct: 245 LKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERL--LYKPAKI 302
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQV---DVSVQEPLLVERPDI 146
T+ +VL P++EL Q + ++ + +R V + V ++ QE +L RPDI
Sbjct: 303 ASTRVIVLLPTRELAIQ----VADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSRPDI 358
Query: 147 VVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
V+ATP R + H++ S+EI+++DEAD + G++D++ ++ LP Q +L S
Sbjct: 359 VIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNRQNLLFS 418
Query: 207 ATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDE-KATILYTLL-KLNL 264
AT++ + SL L L+ PV + ++ P A + + + D K +L+ L+ KL+
Sbjct: 419 ATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRKRDHLKPALLFNLIRKLDP 478
Query: 265 V-QGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIAS 323
Q + ++FV + ++L++ + +S L+ L + R +V +F
Sbjct: 479 TGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKF----------- 527
Query: 324 DEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARG 383
K LE P + T+ SRG+D + VIN+D P + Y+HR GRTAR
Sbjct: 528 --KNLEVPVLICTDL----------ASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARA 575
Query: 384 KNQGTALSFVSLREQD 399
+G +++FV QD
Sbjct: 576 GREGRSVTFVGESSQD 591
>gi|91787410|ref|YP_548362.1| DEAD/DEAH box helicase [Polaromonas sp. JS666]
gi|91696635|gb|ABE43464.1| DEAD/DEAH box helicase-like protein [Polaromonas sp. JS666]
Length = 492
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 114/376 (30%), Positives = 203/376 (53%), Gaps = 31/376 (8%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII---NLKQTA 87
+A+A++G+ T IQE+AIP++LQ KDV+ A+TG+GKT AF++P++Q+++ N +
Sbjct: 16 RAVAEMGYETMTPIQEQAIPVVLQGKDVMGAAQTGTGKTAAFSLPLLQRMLKHENASTSP 75
Query: 88 QVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
+ALVL P++EL Q+ + ++ L K + +++ + +D+ Q L + +++
Sbjct: 76 ARHPVRALVLLPTRELAVQVAEQVK-LYAKHT-NLRSAVVFGGMDMKPQTLELKQGVEVL 133
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
VATP R L H++AK L + +E V++DEAD + G+ D++ +L +LPK +L SA
Sbjct: 134 VATPGRLLDHIEAKNTVL-NQVEYVVLDEADRMLDIGFLPDLQRILSYLPKQRITLLFSA 192
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
T S ++ L L++PV +++ + H++ + +D++ + L + + Q
Sbjct: 193 TFSPEIKRLASSYLQDPVTIEVARSNATASTVEQHFYSVGADDKRRALHQILKERGMKQ- 251
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
+FVN+ C +L LE+ + T L+ + R A+ F +G D+++ +D A
Sbjct: 252 -AFVFVNSKLGCARLARSLEREGLKTTALHGDKSQDERLKALDAFKKGEVDLLVCTDVAA 310
Query: 328 LETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQG 387
RG+D + V V NFD P + + Y+HR GRT R G
Sbjct: 311 -----------------------RGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASG 347
Query: 388 TALSFVSLREQDLMND 403
A+SFV+ +Q L+ D
Sbjct: 348 LAVSFVASSDQRLVAD 363
>gi|167910130|ref|ZP_02497221.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
112]
Length = 400
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 114/384 (29%), Positives = 198/384 (51%), Gaps = 31/384 (8%)
Query: 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII- 81
F L L+AIA+ G+ PT IQ +AIP++L +DV+ A+TG+GKT +F++P+IQ+++
Sbjct: 16 FGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQRLLP 75
Query: 82 --NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL 139
N + +AL+L+P++EL +Q+ N+ ++ + VD++ Q
Sbjct: 76 QANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTP--LRSAVVFGGVDMNPQMAE 133
Query: 140 LVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199
L +I++ATP R L H++ KT +L ++I+++DEAD + G+ D++ +L LPK
Sbjct: 134 LRRGVEILIATPGRLLDHVQQKTANL-GQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192
Query: 200 YQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTL 259
Q +L SAT S ++ L LRNP +++ A + + +A+ D++A ++ +
Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKLI 252
Query: 260 LKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDV 319
+L Q I+F N+ +L +E+ I ++ + R A+ F +G +
Sbjct: 253 RDRSLKQ--VIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIEA 310
Query: 320 IIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGR 379
++A+D A RG+D + VINFD P + + Y+HR GR
Sbjct: 311 LVATDVAA-----------------------RGLDIAELPAVINFDLPFNAEDYVHRIGR 347
Query: 380 TARGKNQGTALSFVSLREQDLMND 403
T R G ALS S E+ + D
Sbjct: 348 TGRAGASGDALSLCSPNERKQLAD 371
>gi|167580312|ref|ZP_02373186.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis TXDOH]
gi|167618435|ref|ZP_02387066.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis Bt4]
gi|257139776|ref|ZP_05588038.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
Length = 481
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 114/384 (29%), Positives = 197/384 (51%), Gaps = 31/384 (8%)
Query: 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII- 81
F L L+AIA+ G+ PT IQ AIP++L +DV+ A+TG+GKT +F++P+IQ+++
Sbjct: 16 FGLAAEILRAIAEQGYTTPTPIQANAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQRLLP 75
Query: 82 --NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL 139
N + +AL+L+P++EL +Q+ N+ ++ + VD++ Q
Sbjct: 76 QANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTP--LRSAVVFGGVDMNPQMAE 133
Query: 140 LVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199
L +I++ATP R L H++ KT +L ++I+++DEAD + G+ D++ +L LPK
Sbjct: 134 LRRGVEILIATPGRLLDHVQQKTANL-GQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192
Query: 200 YQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTL 259
Q +L SAT S ++ L LRNP +++ A + + +A+ D++A ++ +
Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKLI 252
Query: 260 LKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDV 319
+L Q I+F N+ +L +E+ I ++ + R A+ F +G +
Sbjct: 253 RDRSLKQ--VIVFCNSKIGASRLARQIERDGIVAAAIHGDRSQSERMQALDAFKRGEIEA 310
Query: 320 IIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGR 379
++A+D A RG+D + VINFD P + + Y+HR GR
Sbjct: 311 LVATDVAA-----------------------RGLDIAELPAVINFDLPFNAEDYVHRIGR 347
Query: 380 TARGKNQGTALSFVSLREQDLMND 403
T R G ALS S E+ + D
Sbjct: 348 TGRAGASGDALSLCSPNERKQLAD 371
>gi|194290299|ref|YP_002006206.1| dead box ATP-dependent RNA helicase with p-loop hydrolase domain
[Cupriavidus taiwanensis LMG 19424]
gi|193224134|emb|CAQ70143.1| DEAD box ATP-dependent RNA helicase with P-loop hydrolase domain
[Cupriavidus taiwanensis LMG 19424]
Length = 511
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 119/402 (29%), Positives = 209/402 (51%), Gaps = 40/402 (9%)
Query: 10 PTLIQVYFELPFTFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKT 69
PT +Q + +F L L+A+++ G+ PT IQ +AIP++L KDV+ A+TG+GKT
Sbjct: 26 PTAVQTFD----SFGLDARILRALSEQGYTSPTPIQAQAIPVVLLGKDVMGAAQTGTGKT 81
Query: 70 GAFAIPMIQKII---NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVD 126
FA+P+IQ+++ N + +AL+L+P++EL +Q++ N+ D++
Sbjct: 82 AGFALPIIQRLLPLANASASPARHPVRALMLTPTRELADQVYDNVARYAKHT--DLRSTV 139
Query: 127 ISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYE 186
+ VD++ Q L +I+VATP R L H++ K+++L S ++++++DEAD + G+
Sbjct: 140 VFGGVDMNPQTDALRRGVEILVATPGRLLDHVQQKSVNL-SQVQMLVLDEADRMLDMGFL 198
Query: 187 DDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEP-AIAPVSQLAHYHI 245
D++ ++ LP Q +L SAT S ++ L L+ PV +++ + + A Y +
Sbjct: 199 PDLQRIINLLPAQRQTLLFSATFSPEIKRLASSYLKQPVTIEVARSNSTNENVRQAVYQV 258
Query: 246 LAQEDEKATILYTLLKLNLVQGKT---IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPA 302
++ K + LLK Q ++ I+FVN+ C +L +LE+ I+ ++ +
Sbjct: 259 --EDGHKQAAVVHLLKQRAEQSQSRQCIVFVNSKIGCSRLARHLEREGINAAAIHGDKTQ 316
Query: 303 KARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVI 362
R + F G D ++A+D A RG+D + VI
Sbjct: 317 TERMQTLDGFKSGTIDALVATDVAA-----------------------RGLDIPDMPCVI 353
Query: 363 NFDFPLDIQCYIHRAGRTARGKNQGTALS-FVSLREQDLMND 403
NFD P + Y+HR GRT R G ALS +V ++ L++D
Sbjct: 354 NFDLPYSAEDYVHRIGRTGRAGASGDALSIYVPGNDERLLSD 395
>gi|256272311|gb|EEU07295.1| Drs1p [Saccharomyces cerevisiae JAY291]
Length = 751
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 116/376 (30%), Positives = 200/376 (53%), Gaps = 35/376 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ +A LG+++P+ IQ IP+ L KD++ A TGSGKT AF IP+I+++ L + A++
Sbjct: 242 LKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERL--LYKPAKI 299
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQV---DVSVQEPLLVERPDI 146
T+ +VL P++EL Q + ++ + +R V + V ++ QE +L RPDI
Sbjct: 300 ASTRVIVLLPTRELAIQ----VADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSRPDI 355
Query: 147 VVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
V+ATP R + H++ S+EI+++DEAD + G++D++ ++ LP Q +L S
Sbjct: 356 VIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNRQNLLFS 415
Query: 207 ATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDE-KATILYTLL-KLNL 264
AT++ + SL L L+ PV + ++ P A + + + D K +L+ L+ KL+
Sbjct: 416 ATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRKRDHLKPALLFNLIRKLDP 475
Query: 265 V-QGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIAS 323
Q + ++FV + ++L++ + +S L+ L + R +V +F
Sbjct: 476 TGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKF----------- 524
Query: 324 DEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARG 383
K LE P + T+ SRG+D + VIN+D P + Y+HR GRTAR
Sbjct: 525 --KNLEVPVLICTDL----------ASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARA 572
Query: 384 KNQGTALSFVSLREQD 399
+G +++FV QD
Sbjct: 573 GREGRSVTFVGESSQD 588
>gi|349579719|dbj|GAA24880.1| K7_Drs1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 756
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 116/376 (30%), Positives = 200/376 (53%), Gaps = 35/376 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ +A LG+++P+ IQ IP+ L KD++ A TGSGKT AF IP+I+++ L + A++
Sbjct: 247 LKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERL--LYKPAKI 304
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQV---DVSVQEPLLVERPDI 146
T+ +VL P++EL Q + ++ + +R V + V ++ QE +L RPDI
Sbjct: 305 ASTRVIVLLPTRELAIQ----VADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSRPDI 360
Query: 147 VVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
V+ATP R + H++ S+EI+++DEAD + G++D++ ++ LP Q +L S
Sbjct: 361 VIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNRQNLLFS 420
Query: 207 ATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDE-KATILYTLL-KLNL 264
AT++ + SL L L+ PV + ++ P A + + + D K +L+ L+ KL+
Sbjct: 421 ATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRKRDHLKPALLFNLIRKLDP 480
Query: 265 V-QGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIAS 323
Q + ++FV + ++L++ + +S L+ L + R +V +F
Sbjct: 481 TGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKF----------- 529
Query: 324 DEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARG 383
K LE P + T+ SRG+D + VIN+D P + Y+HR GRTAR
Sbjct: 530 --KNLEVPVLICTDL----------ASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARA 577
Query: 384 KNQGTALSFVSLREQD 399
+G +++FV QD
Sbjct: 578 GREGRSVTFVGESSQD 593
>gi|254457659|ref|ZP_05071087.1| putative helicase [Sulfurimonas gotlandica GD1]
gi|373867807|ref|ZP_09604205.1| putative RNA-helicase, DEAD/DEAH box family [Sulfurimonas
gotlandica GD1]
gi|207086451|gb|EDZ63735.1| putative helicase [Sulfurimonas gotlandica GD1]
gi|372469908|gb|EHP30112.1| putative RNA-helicase, DEAD/DEAH box family [Sulfurimonas
gotlandica GD1]
Length = 423
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 120/376 (31%), Positives = 199/376 (52%), Gaps = 28/376 (7%)
Query: 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII 81
T L L+AI + G+ EPT IQ++AIP+IL KD+L A+TG+GKT F +PM++ +
Sbjct: 5 TLGLSAPLLKAIKEQGYTEPTPIQKQAIPVILNRKDILAGAQTGTGKTAGFTLPMLELLS 64
Query: 82 NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLV 141
K T+ KAL+L+P++EL Q+ +++ E+ K CV I V ++ Q L
Sbjct: 65 RAKHTSGKHHVKALILTPTRELAAQVAESV-EVYGKHLPFKSCV-IFGGVKINPQIVQLR 122
Query: 142 ERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQ 201
+ DIV+ATP R L H+ KT+DL S ++ +I+DEAD + G+ +D++ +L+ LPK Q
Sbjct: 123 KGIDIVIATPGRLLDHISQKTIDL-SKVDFLILDEADRMLDMGFINDIRKILEILPKQRQ 181
Query: 202 AILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLK 261
+L SAT S+++ L +L +P ++++ A S+ + + E+ L T L
Sbjct: 182 NLLFSATYSDEIKKLSDRLLNSPTLIEVARRNTA--SETVKQAVYPVDKERKRELLTHLI 239
Query: 262 LNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVII 321
+ + ++F T +L LE+ I++ ++ AR A+ F + V++
Sbjct: 240 NDGKWKQVLVFTRTKHGANRLSDQLEKDGITSAAIHGNKSQNARTKALADFKKSEVRVLV 299
Query: 322 ASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTA 381
A+D A RGID + +V+N++ P + Y+HR GRT
Sbjct: 300 ATDIAA-----------------------RGIDIDQLPHVVNYELPNVSEDYVHRIGRTG 336
Query: 382 RGKNQGTALSFVSLRE 397
R N+G A+S V + E
Sbjct: 337 RAGNEGEAISLVCVDE 352
>gi|254417807|ref|ZP_05031531.1| DEAD/DEAH box helicase domain protein [Brevundimonas sp. BAL3]
gi|196183984|gb|EDX78960.1| DEAD/DEAH box helicase domain protein [Brevundimonas sp. BAL3]
Length = 510
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 115/374 (30%), Positives = 192/374 (51%), Gaps = 28/374 (7%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+A G+ +PT IQE+AIP ++Q KD+L A+TG+GKT AFA+P++ ++ + +
Sbjct: 28 LQALASEGYTKPTPIQEKAIPDVMQGKDLLGIAQTGTGKTAAFALPILHRLAENRIAPKP 87
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ T+ LVLSP++EL Q+ + + + I V QE L + DI+VA
Sbjct: 88 RTTRVLVLSPTRELATQIGDSFKAYGAHLG--FRVAVIFGGVKYGAQERALQQGLDILVA 145
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
P R L H++ K LDL SS EI+++DEAD + G+ ++ ++ +P Q + SAT+
Sbjct: 146 APGRLLDHIQQKNLDL-SSTEILVLDEADQMLDLGFIKPIRQIVSRIPAKRQNLFFSATM 204
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
++ L +L++PV +++ P V +++ + ++ K +L + + +
Sbjct: 205 PTEIGKLAGELLKDPVKVQV-TPQSTTVQRISQSVVHVEQGRKRALLTEMFS-DPEYTRC 262
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
++F T K+ YLE + ++ R + F +G V++A+D A
Sbjct: 263 LVFTKTKHGADKVAAYLEAGGVEAGAIHGNKSQPQRERTLDAFKKGKLRVLVATDIAA-- 320
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
RGID VS+V+NF+ P + Y+HR GRTAR GTA
Sbjct: 321 ---------------------RGIDVDGVSHVVNFELPHVPEAYVHRIGRTARAGADGTA 359
Query: 390 LSFVSLREQDLMND 403
+SFV+ E L+ D
Sbjct: 360 ISFVAGDEMKLLKD 373
>gi|339326719|ref|YP_004686412.1| ATP-dependent RNA helicase RhlE [Cupriavidus necator N-1]
gi|338166876|gb|AEI77931.1| ATP-dependent RNA helicase RhlE [Cupriavidus necator N-1]
Length = 520
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 116/391 (29%), Positives = 205/391 (52%), Gaps = 38/391 (9%)
Query: 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII 81
+F L L+A+++ G+ PT IQ +AIP++L KD++ A+TG+GKT FA+P+IQ+++
Sbjct: 42 SFGLDARILRALSEQGYTTPTPIQAQAIPVVLIGKDMMGAAQTGTGKTAGFALPIIQRLL 101
Query: 82 ---NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEP 138
N + +AL+L+P++EL +Q++ N+ D++ + VD++ Q
Sbjct: 102 PLANASASPARHPVRALMLTPTRELADQVYDNVARYAKHT--DLRSTVVFGGVDMNPQTD 159
Query: 139 LLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPK 198
L +I+VATP R L H++ K+++L S ++++++DEAD + G+ D++ ++ LP
Sbjct: 160 ALRRGVEILVATPGRLLDHVQQKSVNL-SQVQMLVLDEADRMLDMGFLPDLQRIINLLPA 218
Query: 199 LYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIA--PVSQLAHYHILAQEDEKATIL 256
Q +L SAT S ++ L L++PV +++ V Q+ + L ++ K +
Sbjct: 219 HRQTLLFSATFSPEIKRLASSYLKHPVTIEVARSNSTNENVRQMVY---LVEDGHKQAAV 275
Query: 257 YTLLKLNLVQG---KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFN 313
LLK QG + I+FVN+ C +L +LE+ I+ ++ + R + F
Sbjct: 276 VHLLKQRAEQGLSRQCIVFVNSKIGCSRLARHLEREGINAAAIHGDKTQTERMQTLEGFK 335
Query: 314 QGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCY 373
G D ++A+D A RG+D + V+NFD P + Y
Sbjct: 336 SGTIDALVATDVAA-----------------------RGLDIPDMPCVVNFDVPYSAEDY 372
Query: 374 IHRAGRTARGKNQGTALS-FVSLREQDLMND 403
+HR GRT R G ALS +V ++ L++D
Sbjct: 373 VHRIGRTGRAGASGDALSIYVPGNDERLLSD 403
>gi|113868675|ref|YP_727164.1| ATP-dependent helicase [Ralstonia eutropha H16]
gi|113527451|emb|CAJ93796.1| ATP-dependent helicase, superfamily II DNA and RNA helicase
[Ralstonia eutropha H16]
Length = 520
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 116/391 (29%), Positives = 205/391 (52%), Gaps = 38/391 (9%)
Query: 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII 81
+F L L+A+++ G+ PT IQ +AIP++L KD++ A+TG+GKT FA+P+IQ+++
Sbjct: 42 SFGLDARILRALSEQGYTTPTPIQAQAIPVVLIGKDMMGAAQTGTGKTAGFALPIIQRLL 101
Query: 82 ---NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEP 138
N + +AL+L+P++EL +Q++ N+ D++ + VD++ Q
Sbjct: 102 PLANASASPARHPVRALMLTPTRELADQVYDNVARYAKHT--DLRSTVVFGGVDMNPQTD 159
Query: 139 LLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPK 198
L +I+VATP R L H++ K+++L S ++++++DEAD + G+ D++ ++ LP
Sbjct: 160 ALRRGVEILVATPGRLLDHVQQKSVNL-SQVQMLVLDEADRMLDMGFLPDLQRIINLLPA 218
Query: 199 LYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIA--PVSQLAHYHILAQEDEKATIL 256
Q +L SAT S ++ L L++PV +++ V Q+ + L ++ K +
Sbjct: 219 HRQTLLFSATFSPEIKRLASSYLKHPVTIEVARSNSTNENVRQMVY---LVEDGHKQAAV 275
Query: 257 YTLLKLNLVQG---KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFN 313
LLK QG + I+FVN+ C +L +LE+ I+ ++ + R + F
Sbjct: 276 VHLLKQRAEQGLSRQCIVFVNSKIGCSRLARHLEREGINAAAIHGDKTQTERMQTLEGFK 335
Query: 314 QGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCY 373
G D ++A+D A RG+D + V+NFD P + Y
Sbjct: 336 SGTIDALVATDVAA-----------------------RGLDIPDMPCVVNFDVPYSAEDY 372
Query: 374 IHRAGRTARGKNQGTALS-FVSLREQDLMND 403
+HR GRT R G ALS +V ++ L++D
Sbjct: 373 VHRIGRTGRAGASGDALSIYVPGNDERLLSD 403
>gi|167823349|ref|ZP_02454820.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 9]
gi|226195327|ref|ZP_03790916.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pakistan 9]
gi|225932529|gb|EEH28527.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pakistan 9]
Length = 478
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 116/386 (30%), Positives = 202/386 (52%), Gaps = 35/386 (9%)
Query: 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII- 81
F L L+AIA+ G+ PT IQ +AIP++L +DV+ A+TG+GKT +F++P+IQ+++
Sbjct: 16 FGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQRLLP 75
Query: 82 --NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL 139
N + +AL+L+P++EL +Q+ N+ ++ + VD++ Q
Sbjct: 76 QANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTP--LRSAVVFGGVDMNPQMAE 133
Query: 140 LVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199
L +I++ATP R L H++ KT +L ++I+++DEAD + G+ D++ +L LPK
Sbjct: 134 LRRGVEILIATPGRLLDHVQQKTANL-GQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192
Query: 200 YQAILASATLSEDVLSLKHLILRNPVILKL--EEPAIAPVSQLAHYHILAQEDEKATILY 257
Q +L SAT S ++ L LRNP +++ A + V+Q+ + +A+ D++A ++
Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYD--VAEGDKQAAVVK 250
Query: 258 TLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLY 317
+ +L Q I+F N+ +L +E+ I ++ + R A+ F +G
Sbjct: 251 LIRDRSLKQ--VIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEI 308
Query: 318 DVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRA 377
+ ++A+D A RG+D + VINFD P + + Y+HR
Sbjct: 309 EALVATDVAA-----------------------RGLDIAELPAVINFDLPFNAEDYVHRI 345
Query: 378 GRTARGKNQGTALSFVSLREQDLMND 403
GRT R G ALS S E+ + D
Sbjct: 346 GRTGRAGASGDALSLCSPNERKQLAD 371
>gi|255691171|ref|ZP_05414846.1| ATP-dependent RNA helicase RhlE [Bacteroides finegoldii DSM 17565]
gi|260623074|gb|EEX45945.1| DEAD/DEAH box helicase [Bacteroides finegoldii DSM 17565]
Length = 374
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 127/388 (32%), Positives = 205/388 (52%), Gaps = 28/388 (7%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AI + G++ PT IQE+AIP L +D+L A+TG+GKT +FAIP+IQ + K+T +
Sbjct: 13 LKAIEEKGYIAPTSIQEKAIPAALAKRDILGCAQTGTGKTASFAIPIIQHLQANKETDKR 72
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
Q KAL+L+P++EL Q+ + I + + K +R V+ I V+ Q +L + DI+VA
Sbjct: 73 QGIKALILTPTRELAMQISECIDDYS-KYTR-VRHGVIFGGVNQRPQVDMLRKGIDILVA 130
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L + + L +++E ++DEAD + G+ D+K +L LPK Q + SAT+
Sbjct: 131 TPGRLLDLINQGHIHL-TNIEYFVLDEADRMLDMGFIHDIKRILPKLPKEKQTLFFSATM 189
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+ +++L +L+NPV + + P + V + ++ EK+ +L ++L+
Sbjct: 190 PDSIIALTKSLLKNPVKIYI-TPKSSTVDSIKQIIYFVEKKEKSQLLISILQ-KAEDRSV 247
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
+IF T K+ L + I + ++ AR A+ F G V++A+D
Sbjct: 248 LIFSRTKHNADKIVRILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTKVMVATDI---- 303
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRGID + VIN+D P + Y+HR GRT R N+GTA
Sbjct: 304 -------------------ASRGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNEGTA 344
Query: 390 LSFVSLREQDLMNDGTALSFVSLREQDL 417
L+F S E+ L+ND L+ L + D
Sbjct: 345 LTFCSQEERKLVNDIQKLTGKKLNKADF 372
>gi|147921542|ref|YP_684642.1| ATP-dependent RNA helicase [Methanocella arvoryzae MRE50]
gi|110620038|emb|CAJ35316.1| ATP-dependent RNA helicase [Methanocella arvoryzae MRE50]
Length = 497
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 126/373 (33%), Positives = 193/373 (51%), Gaps = 41/373 (10%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++A+ ++G+ E T IQE+AIPL ++ KD++ +ARTG+GKT AF IPM++ I + Q
Sbjct: 14 VRAVHEMGFEEATPIQEQAIPLAMEGKDLIGQARTGTGKTAAFGIPMVEAIRPTSKGVQ- 72
Query: 90 QETKALVLSPSKELCNQLHKNIQELT-MKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
LV+ P++EL Q+ +ELT + R ++ V I D Q L E P IVV
Sbjct: 73 ----GLVVVPTRELAVQV---AEELTRIGKVRGIRSVAIYGGQDFRSQVKALEELPHIVV 125
Query: 149 ATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
TP R L H++ + + S + I ++DEAD + G+ D+ + +LK LP+ Q +L SAT
Sbjct: 126 GTPGRLLEHMRREYVRT-SDIRIAVLDEADKMLDMGFIDEAEKILKKLPERRQTLLFSAT 184
Query: 209 LSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLL---KLNLV 265
LS V L L++P +++ EE I V Y+I E +K L LL K L
Sbjct: 185 LSPPVQMLARKYLKDPELIEFEEEGIT-VPTTVQYYIEMPEKQKFEALTRLLDQEKPELA 243
Query: 266 QGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE 325
I+FV T + +L L + L+ +L R + + +F G +++A+D
Sbjct: 244 ----IVFVATRIRVGELAKALVERGYHALGLHGDLLQYQRENTLDKFKAGEVSILVATDV 299
Query: 326 KALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKN 385
A RG+D Q V++V NFD P D Y+HR GRT R N
Sbjct: 300 AA-----------------------RGLDIQGVTHVYNFDIPRDPDSYVHRIGRTGRAGN 336
Query: 386 QGTALSFVSLREQ 398
GTA +FV+ +++
Sbjct: 337 AGTATTFVTPKDK 349
>gi|19113831|ref|NP_592919.1| ATP-dependent RNA helicase Dbp10 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|1175401|sp|Q09719.1|DBP10_SCHPO RecName: Full=ATP-dependent RNA helicase dbp10
gi|914885|emb|CAA90465.1| ATP-dependent RNA helicase Dbp10 (predicted) [Schizosaccharomyces
pombe]
Length = 848
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 133/399 (33%), Positives = 196/399 (49%), Gaps = 64/399 (16%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AI K G+ PT IQ + IPL+L+ +DV+ ARTGSGKT AF IPMI+ +LK T
Sbjct: 81 LRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIE---HLKSTLAN 137
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T+AL+LSP++EL Q K +++ + D++ V I V + Q LL +PDIVVA
Sbjct: 138 SNTRALILSPNRELALQTVKVVKDFSKGT--DLRSVAIVGGVSLEEQFSLLSGKPDIVVA 195
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + SS+E V+ DEAD +F G+ + +L LP Q +L SATL
Sbjct: 196 TPGRFL-HLKVEMKLELSSIEYVVFDEADRLFEMGFAAQLTEILHALPTSRQTLLFSATL 254
Query: 210 SEDVLSLKHLILRNPVILKLE-EPAIAPVSQLAHYHILAQEDEKA--TILYTLLKLNL-- 264
++ L++PV+++L+ E ++ Q A + + E E A IL ++KL L
Sbjct: 255 PRTLVDFAKAGLQDPVLVRLDVESKVSADLQSAFFSVKTAEREAALLCILQDIIKLPLKD 314
Query: 265 -----------------------VQG-------KTIIFVNTVDKCYKLKLYLEQFKISTC 294
++G T++FV T + L Q S
Sbjct: 315 NVRPREIGNVNNPKKRKRALELALKGSESGSPDSTLVFVPTKHHVEYVSELLVQAGYSVS 374
Query: 295 VLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGID 354
+ L +AR + + F G ++++ +D SRGID
Sbjct: 375 KIYGSLDQEARLNEINNFRLGKTNLLVVTDV-----------------------ASRGID 411
Query: 355 FQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFV 393
++NVIN+DFP + ++HR GRTAR G A S V
Sbjct: 412 IPLLANVINYDFPPQPKVFVHRVGRTARAGRTGWAYSLV 450
>gi|302795308|ref|XP_002979417.1| hypothetical protein SELMODRAFT_110816 [Selaginella moellendorffii]
gi|300152665|gb|EFJ19306.1| hypothetical protein SELMODRAFT_110816 [Selaginella moellendorffii]
Length = 749
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 121/376 (32%), Positives = 200/376 (53%), Gaps = 36/376 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A LG+ +PT IQ IPL L +D+ A TGSGKT AFA+P+++++ L + ++
Sbjct: 129 LRACDALGYRQPTPIQAACIPLALAGRDICGSAVTGSGKTAAFALPILERL--LFRPRRI 186
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ L+++P++EL QLH I++L D++C + + VQE L PDIVVA
Sbjct: 187 PAIRVLIITPTRELAVQLHSMIEKLAQFT--DIRCSLVVGGLSSKVQEVALRTHPDIVVA 244
Query: 150 TPARALAHLK-AKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
TP R + HL+ +++ L+ L I+++DEAD + G+ +++ ++K P Q +L SAT
Sbjct: 245 TPGRMIDHLRNTQSVGLE-ELAILVLDEADRLLELGFREEIHELVKLCPSRRQTMLFSAT 303
Query: 209 LSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHI---LAQEDEKATILYTLLKLNLV 265
++++V L L L++PV L +P+ S L I E +K I+ +L +L
Sbjct: 304 MTDEVSELIKLSLKSPVRLSA-DPSTERPSTLTEEVIRIRAGHEGDKEAIVLSLCSRSL- 361
Query: 266 QGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE 325
+ KTIIF T + ++LK+ + + L+ L R A+ F + D +IA+D
Sbjct: 362 KSKTIIFSGTKVEAHRLKILFGLSGLKSAELHGNLTQAQRLEALEAFRKQEVDFLIATDV 421
Query: 326 KALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKN 385
A RG+D V +VIN + P +I+ Y+HR GRTAR
Sbjct: 422 AA-----------------------RGLDIIGVESVINLECPKEIKTYVHRVGRTARAGR 458
Query: 386 QGTALSFVSLREQDLM 401
G +++ ++ EQD +
Sbjct: 459 HGRSVTLMT--EQDRL 472
>gi|431931271|ref|YP_007244317.1| DNA/RNA helicase [Thioflavicoccus mobilis 8321]
gi|431829574|gb|AGA90687.1| DNA/RNA helicase, superfamily II [Thioflavicoccus mobilis 8321]
Length = 417
Score = 181 bits (459), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 128/388 (32%), Positives = 199/388 (51%), Gaps = 41/388 (10%)
Query: 21 FTFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMI 77
+F C+ +AIA G+ PT IQ +AIP IL +DVL A+TG+GKT AF +PM+
Sbjct: 1 MSFDSLCLTDELRRAIAAQGYRSPTPIQAQAIPAILDGRDVLAGAQTGTGKTAAFTLPML 60
Query: 78 QKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQE 137
Q+ + +QT Q +ALVL+P++EL Q+ ++I +T ++ I V + Q
Sbjct: 61 QR-LGERQTGH-QRPRALVLTPTRELAAQVGESI--VTYGRYLPLRSAIIFGGVGIQPQI 116
Query: 138 PLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLP 197
L DIVVATP R L H+ +TLDL S +EI+++DEAD + G+ D++ VL+ LP
Sbjct: 117 AQLRRGVDIVVATPGRLLDHVGQRTLDL-SGIEILVLDEADRMLDMGFIHDIRRVLRLLP 175
Query: 198 KLYQAILASATLSEDVLSLKHLILRNPVILKL--EEPAIAPVSQLAHYHILAQEDEKATI 255
Q++L SAT S ++ L + +LR+PV + + A VSQL H ++ K +
Sbjct: 176 TNRQSLLFSATYSNEIEQLANGLLRDPVTIAVARRNTAAEQVSQLVHP---VAKERKREL 232
Query: 256 LYTLLKLNLVQG--KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFN 313
L L+ QG + ++F T +L L + I+ ++ AR +A+ F
Sbjct: 233 LSHLIH---SQGWDQVLVFTRTKHGANRLTDQLVRDGIAAAAIHGNKSQSARTNALAGFK 289
Query: 314 QGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCY 373
+G ++A+D A RG+D + V+N++ P + Y
Sbjct: 290 RGAVRALVATDIAA-----------------------RGLDIDQLPYVVNYELPNVPEDY 326
Query: 374 IHRAGRTARGKNQGTALSFVSLREQDLM 401
+HR GRT R + G A S V EQ L+
Sbjct: 327 VHRIGRTGRAGSAGAAFSLVCHEEQKLL 354
>gi|89901799|ref|YP_524270.1| DEAD/DEAH box helicase-like protein [Rhodoferax ferrireducens T118]
gi|89346536|gb|ABD70739.1| DEAD/DEAH box helicase-like [Rhodoferax ferrireducens T118]
Length = 506
Score = 181 bits (459), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 119/391 (30%), Positives = 206/391 (52%), Gaps = 34/391 (8%)
Query: 19 LPFTFTLF--CIPL-QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIP 75
LP F PL +A+A +G+ T IQ +AIP++LQ +DV+ A+TG+GKT AFA+P
Sbjct: 13 LPMAFAQLQLAAPLARAVADMGYETMTPIQAQAIPVVLQGRDVMGAAQTGTGKTAAFALP 72
Query: 76 MIQKII---NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVD 132
++Q+++ N + +ALVL P++EL +Q+ + I++ + +++ + +D
Sbjct: 73 LLQRMLKHENSSTSPARHPVRALVLLPTRELADQVAQAIKDYAVHT--NLRSAVVFGGMD 130
Query: 133 VSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAV 192
+ Q L + +++VATP R L H++AK L + +E V++DEAD + G+ D++ +
Sbjct: 131 MKPQTLELKKGVEVLVATPGRLLDHIEAKNCVL-NQVEYVVLDEADRMLDIGFLPDLQRI 189
Query: 193 LKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEK 252
L +LPK +L SAT S ++ L L++PV +++ A + H++ + D+K
Sbjct: 190 LSYLPKQRITLLFSATFSSEIKRLASSYLQDPVTIEVARSNAAASTVEQHFYSV-DADDK 248
Query: 253 ATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQF 312
L+ +LK ++ + +FVN+ C +L LE + T L+ + R A+ F
Sbjct: 249 RHALHQILKSRGMK-QAFVFVNSKLGCARLARSLEHEGLKTTALHGDKSQDERLKALEAF 307
Query: 313 NQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQC 372
G D+++ +D A RG+D + V V NFD P + +
Sbjct: 308 KSGEVDLLVCTDVAA-----------------------RGLDIKDVPAVFNFDIPFNAED 344
Query: 373 YIHRAGRTARGKNQGTALSFVSLREQDLMND 403
Y+HR GRT R G A+SFV+ + L+ D
Sbjct: 345 YVHRIGRTGRAGAAGLAVSFVAKSDIRLVAD 375
>gi|167844897|ref|ZP_02470405.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
B7210]
Length = 399
Score = 181 bits (459), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 114/384 (29%), Positives = 198/384 (51%), Gaps = 31/384 (8%)
Query: 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII- 81
F L L+AIA+ G+ PT IQ +AIP++L +DV+ A+TG+GKT +F++P+IQ+++
Sbjct: 16 FGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQRLLP 75
Query: 82 --NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL 139
N + +AL+L+P++EL +Q+ N+ ++ + VD++ Q
Sbjct: 76 QANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTP--LRSAVVFGGVDMNPQMAE 133
Query: 140 LVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199
L +I++ATP R L H++ KT +L ++I+++DEAD + G+ D++ +L LPK
Sbjct: 134 LRRGVEILIATPGRLLDHVQQKTANL-GQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192
Query: 200 YQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTL 259
Q +L SAT S ++ L LRNP +++ A + + +A+ D++A ++ +
Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKLI 252
Query: 260 LKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDV 319
+L Q I+F N+ +L +E+ I ++ + R A+ F +G +
Sbjct: 253 RDRSLKQ--VIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIEA 310
Query: 320 IIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGR 379
++A+D A RG+D + VINFD P + + Y+HR GR
Sbjct: 311 LVATDVAA-----------------------RGLDIAELPAVINFDLPFNAEDYVHRIGR 347
Query: 380 TARGKNQGTALSFVSLREQDLMND 403
T R G ALS S E+ + D
Sbjct: 348 TGRAGASGDALSLCSPNERKQLAD 371
>gi|160380652|sp|A7A0P8.1|DRS1_YEAS7 RecName: Full=ATP-dependent RNA helicase DRS1; AltName:
Full=Deficiency of ribosomal subunits protein 1
gi|151941161|gb|EDN59539.1| conserved protein [Saccharomyces cerevisiae YJM789]
gi|190406035|gb|EDV09302.1| ATP dependent RNA helicase [Saccharomyces cerevisiae RM11-1a]
gi|207343227|gb|EDZ70754.1| YLL008Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 754
Score = 181 bits (459), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 116/376 (30%), Positives = 200/376 (53%), Gaps = 35/376 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ +A LG+++P+ IQ IP+ L KD++ A TGSGKT AF IP+I+++ L + A++
Sbjct: 245 LKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERL--LYKPAKI 302
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQV---DVSVQEPLLVERPDI 146
T+ +VL P++EL Q + ++ + +R V + V ++ QE +L RPDI
Sbjct: 303 ASTRVIVLLPTRELAIQ----VADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSRPDI 358
Query: 147 VVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
V+ATP R + H++ S+EI+++DEAD + G++D++ ++ LP Q +L S
Sbjct: 359 VIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNRQNLLFS 418
Query: 207 ATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDE-KATILYTLL-KLNL 264
AT++ + SL L L+ PV + ++ P A + + + D K +L+ L+ KL+
Sbjct: 419 ATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRKRDHLKPALLFNLIRKLDP 478
Query: 265 V-QGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIAS 323
Q + ++FV + ++L++ + +S L+ L + R +V +F
Sbjct: 479 TGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKF----------- 527
Query: 324 DEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARG 383
K LE P + T+ SRG+D + VIN+D P + Y+HR GRTAR
Sbjct: 528 --KNLEVPVLICTDL----------ASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARA 575
Query: 384 KNQGTALSFVSLREQD 399
+G +++FV QD
Sbjct: 576 GREGRSVTFVGESSQD 591
>gi|6323021|ref|NP_013093.1| Drs1p [Saccharomyces cerevisiae S288c]
gi|1706521|sp|P32892.2|DRS1_YEAST RecName: Full=ATP-dependent RNA helicase DRS1; AltName:
Full=Deficiency of ribosomal subunits protein 1
gi|1360171|emb|CAA97452.1| DRS1 [Saccharomyces cerevisiae]
gi|1495215|emb|CAA62783.1| L1345/DRS1 protein [Saccharomyces cerevisiae]
gi|285813414|tpg|DAA09310.1| TPA: Drs1p [Saccharomyces cerevisiae S288c]
Length = 752
Score = 181 bits (459), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 116/376 (30%), Positives = 200/376 (53%), Gaps = 35/376 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ +A LG+++P+ IQ IP+ L KD++ A TGSGKT AF IP+I+++ L + A++
Sbjct: 243 LKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERL--LYKPAKI 300
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQV---DVSVQEPLLVERPDI 146
T+ +VL P++EL Q + ++ + +R V + V ++ QE +L RPDI
Sbjct: 301 ASTRVIVLLPTRELAIQ----VADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSRPDI 356
Query: 147 VVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
V+ATP R + H++ S+EI+++DEAD + G++D++ ++ LP Q +L S
Sbjct: 357 VIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNRQNLLFS 416
Query: 207 ATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDE-KATILYTLL-KLNL 264
AT++ + SL L L+ PV + ++ P A + + + D K +L+ L+ KL+
Sbjct: 417 ATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRKRDHLKPALLFNLIRKLDP 476
Query: 265 V-QGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIAS 323
Q + ++FV + ++L++ + +S L+ L + R +V +F
Sbjct: 477 TGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKF----------- 525
Query: 324 DEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARG 383
K LE P + T+ SRG+D + VIN+D P + Y+HR GRTAR
Sbjct: 526 --KNLEVPVLICTDL----------ASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARA 573
Query: 384 KNQGTALSFVSLREQD 399
+G +++FV QD
Sbjct: 574 GREGRSVTFVGESSQD 589
>gi|323303947|gb|EGA57727.1| Drs1p [Saccharomyces cerevisiae FostersB]
Length = 755
Score = 181 bits (459), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 116/376 (30%), Positives = 200/376 (53%), Gaps = 35/376 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ +A LG+++P+ IQ IP+ L KD++ A TGSGKT AF IP+I+++ L + A++
Sbjct: 246 LKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERL--LYKPAKI 303
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQV---DVSVQEPLLVERPDI 146
T+ +VL P++EL Q + ++ + +R V + V ++ QE +L RPDI
Sbjct: 304 ASTRVIVLLPTRELAIQ----VADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSRPDI 359
Query: 147 VVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
V+ATP R + H++ S+EI+++DEAD + G++D++ ++ LP Q +L S
Sbjct: 360 VIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNRQNLLFS 419
Query: 207 ATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDE-KATILYTLL-KLNL 264
AT++ + SL L L+ PV + ++ P A + + + D K +L+ L+ KL+
Sbjct: 420 ATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRKRDHLKPALLFNLIRKLDP 479
Query: 265 V-QGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIAS 323
Q + ++FV + ++L++ + +S L+ L + R +V +F
Sbjct: 480 TGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKF----------- 528
Query: 324 DEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARG 383
K LE P + T+ SRG+D + VIN+D P + Y+HR GRTAR
Sbjct: 529 --KNLEVPVLICTDL----------ASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARA 576
Query: 384 KNQGTALSFVSLREQD 399
+G +++FV QD
Sbjct: 577 GREGRSVTFVGESSQD 592
>gi|392297967|gb|EIW09066.1| Drs1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 748
Score = 181 bits (459), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 116/376 (30%), Positives = 200/376 (53%), Gaps = 35/376 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ +A LG+++P+ IQ IP+ L KD++ A TGSGKT AF IP+I+++ L + A++
Sbjct: 239 LKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERL--LYKPAKI 296
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQV---DVSVQEPLLVERPDI 146
T+ +VL P++EL Q + ++ + +R V + V ++ QE +L RPDI
Sbjct: 297 ASTRVIVLLPTRELAIQ----VADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSRPDI 352
Query: 147 VVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
V+ATP R + H++ S+EI+++DEAD + G++D++ ++ LP Q +L S
Sbjct: 353 VIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNRQNLLFS 412
Query: 207 ATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDE-KATILYTLL-KLNL 264
AT++ + SL L L+ PV + ++ P A + + + D K +L+ L+ KL+
Sbjct: 413 ATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRKRDHLKPALLFNLIRKLDP 472
Query: 265 V-QGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIAS 323
Q + ++FV + ++L++ + +S L+ L + R +V +F
Sbjct: 473 TGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKF----------- 521
Query: 324 DEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARG 383
K LE P + T+ SRG+D + VIN+D P + Y+HR GRTAR
Sbjct: 522 --KNLEVPVLICTDL----------ASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARA 569
Query: 384 KNQGTALSFVSLREQD 399
+G +++FV QD
Sbjct: 570 GREGRSVTFVGESSQD 585
>gi|315648503|ref|ZP_07901602.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
gi|315276197|gb|EFU39543.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
Length = 536
Score = 181 bits (459), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 117/378 (30%), Positives = 201/378 (53%), Gaps = 35/378 (9%)
Query: 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIIN 82
F L LQAI +LG+ E T IQ ++IP+ L +D++ +A+TG+GKT AF +P+I KI
Sbjct: 7 FGLEPRVLQAITELGFEEATPIQSQSIPIALTGRDMIGQAQTGTGKTAAFGLPLIHKI-- 64
Query: 83 LKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVE 142
+ + +L+++P++EL Q+ + I +L+ + ++ + I D+ Q L +
Sbjct: 65 ---AKEEERIVSLIMTPTRELAIQVAEEIGKLSR--FKGIRSLAIYGGQDIGRQIRALKK 119
Query: 143 RPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQA 202
+P I++ TP R L H+ KT+ L ++ V++DEAD + G+ +D++++LK +P+ Q
Sbjct: 120 KPQIIIGTPGRLLDHINRKTIRL-DDVQTVVLDEADEMLDMGFMEDIQSILKLVPEERQT 178
Query: 203 ILASATLSEDVLSLKHLILRNPV-ILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLK 261
+L SAT+ ++ L L++P + + + AP+ A+ + E +K L LL
Sbjct: 179 LLFSATMPANIQKLASQFLKDPEHVSVIPKHVSAPLIDQAYIEV--PERQKFEALSRLLD 236
Query: 262 LNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVII 321
+ + I+F T + +L L++ S L+ +L R + +F G DV++
Sbjct: 237 MESPE-LAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQHQRDTVMRKFRDGSIDVLV 295
Query: 322 ASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTA 381
A+D A RG+D V++V+NFD P D + Y+HR GRT
Sbjct: 296 ATDVAA-----------------------RGLDVSGVTHVVNFDLPQDPESYVHRIGRTG 332
Query: 382 RGKNQGTALSFVSLREQD 399
R +GTA SFV+ RE D
Sbjct: 333 RAGKEGTAWSFVTPREMD 350
>gi|308068476|ref|YP_003870081.1| RNA helicase exp9 (Exported protein 9) [Paenibacillus polymyxa
E681]
gi|305857755|gb|ADM69543.1| Probable RNA helicase exp9 (Exported protein 9) [Paenibacillus
polymyxa E681]
Length = 529
Score = 181 bits (459), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 116/374 (31%), Positives = 203/374 (54%), Gaps = 35/374 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
+QAI +LG+ E T IQ ++IP+ LQ +D++ +A+TG+GKT AF IP+I KI +
Sbjct: 14 IQAITELGFEEATPIQSQSIPIALQGRDMIGQAQTGTGKTAAFGIPLINKI-----SRSD 68
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
++ +AL+++P++EL Q+ + I++L+ + ++ + I D+ Q L ++P I++
Sbjct: 69 EKIRALIMAPTRELAIQVAEEIEKLSR--FKGLRTLPIYGGQDIVRQIRALKKKPQIIIG 126
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H+ KT+ L+ + V++DEAD + G+ +D++++LK +P Q +L SAT+
Sbjct: 127 TPGRLLDHINRKTIKLE-DVNTVVLDEADEMLDMGFMEDIQSILKQVPDERQTMLFSATM 185
Query: 210 SEDVLSLKHLILRNPV-ILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGK 268
++ L L+NP + + + AP+ + +I E +K L L+ + +
Sbjct: 186 PANIKRLAEQFLKNPEHVSVIPKQVSAPL--IDQAYIEVPERQKFEALSRLIDMESPE-L 242
Query: 269 TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL 328
I+F T + +L L++ S L+ +L R + +F G DV++A+D A
Sbjct: 243 AIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVLVATDVAA- 301
Query: 329 ETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGT 388
RG+D V++V+NFD P D + Y+HR GRT R +G
Sbjct: 302 ----------------------RGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGE 339
Query: 389 ALSFVSLREQDLMN 402
A SFV+ RE D ++
Sbjct: 340 AWSFVTPREIDHLH 353
>gi|255711296|ref|XP_002551931.1| KLTH0B03278p [Lachancea thermotolerans]
gi|238933309|emb|CAR21493.1| KLTH0B03278p [Lachancea thermotolerans CBS 6340]
Length = 739
Score = 181 bits (459), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 115/376 (30%), Positives = 196/376 (52%), Gaps = 35/376 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ + L +++P+ IQ IP+ L KD++ A TGSGKT A+ IP+I+++ L + AQ+
Sbjct: 235 LKGLGALNYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAYMIPIIERL--LYKPAQI 292
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQV---DVSVQEPLLVERPDI 146
T+ +VL+P++EL Q + ++ K ++ V + V ++ QE L RPDI
Sbjct: 293 ASTRVIVLTPTRELAIQ----VSDVGAKLAKFVNGISFGLAVGGLNLRQQEQTLRSRPDI 348
Query: 147 VVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
V+ATP R + H++ S+EI++IDEAD + G++D++ ++ +P Q +L S
Sbjct: 349 VIATPGRLIDHIRNSASFNVDSVEILVIDEADRMLEEGFQDELNEIMSLIPSKRQTLLFS 408
Query: 207 ATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDE-KATILYTLLKL--N 263
AT++ + L L L+ PV + ++ P A + + + DE K +L+ L++ +
Sbjct: 409 ATMNSKINQLISLSLKKPVKIMIDPPRQAAAKLTQEFVRVRKRDELKPALLFHLIRKLDD 468
Query: 264 LVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIAS 323
L Q + ++FV + +KL++ L + L+ L + R AV F
Sbjct: 469 LSQKRVVVFVARKEVAHKLRIILGLLGMKVAELHGSLSQEQRLQAVNGF----------- 517
Query: 324 DEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARG 383
K+L+ P + T+ SRG+D + VIN+D P Y+HR GRTAR
Sbjct: 518 --KSLQVPVLICTDL----------ASRGLDIPKIEFVINYDMPKTYDIYLHRVGRTARA 565
Query: 384 KNQGTALSFVSLREQD 399
+G ++SFV QD
Sbjct: 566 GREGRSISFVGESSQD 581
>gi|313887901|ref|ZP_07821580.1| DEAD-box ATP-dependent RNA helicase CshA [Peptoniphilus harei
ACS-146-V-Sch2b]
gi|312846067|gb|EFR33449.1| DEAD-box ATP-dependent RNA helicase CshA [Peptoniphilus harei
ACS-146-V-Sch2b]
Length = 544
Score = 181 bits (459), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 116/368 (31%), Positives = 188/368 (51%), Gaps = 32/368 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQAI +G+ P+ +QE IPLIL+ +DVL +A+TG+GKT +F IPMI+ I + Q
Sbjct: 13 LQAIDDMGFESPSEVQEATIPLILEGRDVLAQAQTGTGKTASFGIPMIEGIEDKSHNLQ- 71
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
LVL P++EL Q+ +++L K + + V I D+ Q L + DIVV
Sbjct: 72 ----GLVLVPTRELARQVSDELKKLA-KYKKFISIVPIYGGADMGKQLRDLKKGADIVVG 126
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + H+K KT+ L L+ + +DEAD +F G+ DDMK +++ Q + SAT
Sbjct: 127 TPGRVMDHMKRKTIVL-DDLKFLTLDEADEMFDMGFRDDMKTIIEKTNPDRQTLFFSATF 185
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
D+ L +P + +E+ + ++ +++ + K IL L+ ++ + K+
Sbjct: 186 DNDIKEFSRLYQVDPAKVIIEKKELT-AEKIEQFYLELNRNMKTEILNRLILIHKPK-KS 243
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
IIF NT L+L + Q L+ ++ +R + + +F G DV+IA+D A
Sbjct: 244 IIFCNTKRMVEALELEIAQRGYKVDSLHGDMRQSSRDNVMKKFRNGTIDVLIATDVAA-- 301
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
RG+D + V N+D P + Y+HR GRTAR +G +
Sbjct: 302 ---------------------RGLDVSDIDLVFNYDLPQQAEYYVHRIGRTARAGKKGAS 340
Query: 390 LSFVSLRE 397
+FV+ R+
Sbjct: 341 FTFVTSRD 348
>gi|171656|gb|AAA34666.1| ATP-dependent RNA helicase [Saccharomyces cerevisiae]
Length = 722
Score = 181 bits (459), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 116/376 (30%), Positives = 200/376 (53%), Gaps = 35/376 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ +A LG+++P+ IQ IP+ L KD++ A TGSGKT AF IP+I+++ L + A++
Sbjct: 213 LKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERL--LYKPAKI 270
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQV---DVSVQEPLLVERPDI 146
T+ +VL P++EL Q + ++ + +R V + V ++ QE +L RPDI
Sbjct: 271 ASTRVIVLLPTRELAIQ----VADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSRPDI 326
Query: 147 VVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
V+ATP R + H++ S+EI+++DEAD + G++D++ ++ LP Q +L S
Sbjct: 327 VIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNRQNLLFS 386
Query: 207 ATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDE-KATILYTLL-KLN- 263
AT++ + SL L L+ PV + ++ P A + + + D K +L+ L+ KL+
Sbjct: 387 ATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRKRDHLKPALLFNLIRKLDP 446
Query: 264 LVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIAS 323
Q + ++FV + ++L++ + +S L+ L + R +V +F
Sbjct: 447 TGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKF----------- 495
Query: 324 DEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARG 383
K LE P + T+ SRG+D + VIN+D P + Y+HR GRTAR
Sbjct: 496 --KNLEVPVLICTDL----------ASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARA 543
Query: 384 KNQGTALSFVSLREQD 399
+G +++FV QD
Sbjct: 544 GREGRSVTFVGESSQD 559
>gi|399927884|ref|ZP_10785242.1| Superfamily II DNA and RNA helicase [Myroides injenensis M09-0166]
Length = 371
Score = 181 bits (459), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 120/374 (32%), Positives = 202/374 (54%), Gaps = 31/374 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQAI ++G+ PT IQ +AIP ILQ KD++ A+TG+GKTGAFAIP+++ ++N + + +V
Sbjct: 13 LQAIQEVGYTTPTAIQVQAIPPILQGKDIIGCAQTGTGKTGAFAIPILEGLLNKQTSKKV 72
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
ET LVL P++EL Q+ K+ ++ + + +K + + V + Q L + P IV+A
Sbjct: 73 VET--LVLVPTRELALQVEKSFKDYSKHTA--IKTIALFGGVALPPQIKALKQNPKIVIA 128
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L ++ K + + S++ +++DEAD + G+ D+K VL ++PK Q + SAT+
Sbjct: 129 TPGRLLDLIQQKLVSI-SNISTLVLDEADQMLDMGFIHDIKKVLSYVPKKRQTLFFSATM 187
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+ IL P+ +++ + + + QED+K +L+T+LK N + +T
Sbjct: 188 PAAIEKFARTILYQPIKVEVAAKTLTAKKVAQSVYFVNQEDKKK-VLHTILK-NNAETQT 245
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
+IF T L YL++ +++ ++ AR A+ F +++IA+D A
Sbjct: 246 LIFTRTKHGANNLVKYLQKVGLNSVAIHGNKSQNARVAALNNFKNNSINILIATDIAA-- 303
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
RGID + VIN++ P + Y+HR GRT R G A
Sbjct: 304 ---------------------RGIDIDKLPFVINYEIPNVPETYVHRIGRTGRAGLSGEA 342
Query: 390 LSFVSLRE-QDLMN 402
+S S +E +DL+N
Sbjct: 343 VSLCSPQEKKDLLN 356
>gi|190892959|ref|YP_001979501.1| ATP-dependent RNA helicase [Rhizobium etli CIAT 652]
gi|190698238|gb|ACE92323.1| ATP-dependent RNA helicase protein [Rhizobium etli CIAT 652]
Length = 565
Score = 181 bits (459), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 117/384 (30%), Positives = 195/384 (50%), Gaps = 35/384 (9%)
Query: 20 PFTFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQK 79
P TLF +LG PT IQE+AIPL+LQ +D++ A+TG+GKT AF +P+I+K
Sbjct: 33 PIVATLF--------QLGIETPTPIQEQAIPLLLQGRDLIGLAQTGTGKTAAFGLPLIEK 84
Query: 80 IINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL 139
++ ++ + T+ L+L+P++EL NQ+ N+++ K + V V ++ Q+
Sbjct: 85 LLADERRPDNRTTRTLILAPTRELVNQIADNLKKFIRKSPLRINVV--VGGVSINKQQLQ 142
Query: 140 LVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199
L + D++VATP R L + + + L +++ +++DEAD + G+ D++ + K +PK
Sbjct: 143 LEKGTDVLVATPGRLLDLVNRRAITL-TTVRYLVLDEADQMLDLGFVHDLRKIAKLVPKK 201
Query: 200 YQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTL 259
Q +L SAT+ + + L L +PV +++ P A + H +A +++K +L
Sbjct: 202 RQTMLFSATMPKAIADLAGEYLVDPVKVEVTPPGKAADKVEQYVHFVAGKNDKTELLRKS 261
Query: 260 LKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDV 319
L N G+ I+F+ T KL +L+ S ++ R A+ F G
Sbjct: 262 LTEN-PDGRAIVFLRTKHGAEKLMKHLDNIGYSVASIHGNKSQGQRERALKAFRDGSIKT 320
Query: 320 IIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGR 379
+IA+D A RGID VS+V N+D P Y+HR GR
Sbjct: 321 LIATDVAA-----------------------RGIDIPAVSHVYNYDLPEVPDAYVHRIGR 357
Query: 380 TARGKNQGTALSFVSLREQDLMND 403
TAR G A++F + E L+ D
Sbjct: 358 TARAGRDGIAIAFCAPDEAKLLRD 381
>gi|337745879|ref|YP_004640041.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus KNP414]
gi|379719836|ref|YP_005311967.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus 3016]
gi|386722433|ref|YP_006188759.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus K02]
gi|336297068|gb|AEI40171.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
mucilaginosus KNP414]
gi|378568508|gb|AFC28818.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
mucilaginosus 3016]
gi|384089558|gb|AFH60994.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus K02]
Length = 537
Score = 181 bits (459), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 121/387 (31%), Positives = 207/387 (53%), Gaps = 42/387 (10%)
Query: 22 TFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQ 78
TF+ F + L+AI ++G+ E T IQE+AIP+ L+ +D++ +A+TG+GKT AF IP++
Sbjct: 3 TFSEFGLEPKVLRAITEMGFEESTPIQEKAIPVALEGRDLIGQAQTGTGKTAAFGIPLVN 62
Query: 79 KIINLKQTAQVQETK--ALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQ 136
KI V+E K AL++ P++EL Q+ + I++L + ++ + I D+ Q
Sbjct: 63 KI-------DVKEEKIVALIMCPTRELAIQVAEEIEKLGR--FKGIRSLPIYGGQDIVKQ 113
Query: 137 EPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFL 196
L ++P I++ TP R L H+ KT+ L ++ VI+DEAD + G+ DD+K++L +
Sbjct: 114 IRGLRKKPQIIIGTPGRLLDHINRKTIKL-DDVQTVILDEADEMLDMGFMDDIKSILSLV 172
Query: 197 PKLYQAILASATLSEDVLSLKHLILRNPV-ILKLEEPAIAPVSQLAHYHILAQEDEKATI 255
P+ +L SAT+ ++ L L++P + + + AP+ A+ + E +K
Sbjct: 173 PEERNTMLFSATMPVNIQKLAQQFLKDPEHVSVIPKQVSAPLIDQAYIEL--HERQKFEA 230
Query: 256 LYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQG 315
L L+ + + IIF T + +L L++ + L+ +L R + + +F G
Sbjct: 231 LCRLIDMEAPE-LAIIFGRTKRRVDELSEALQKRGYAAEGLHGDLSQNQRDNVMRKFRDG 289
Query: 316 LYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIH 375
DV++A+D A RG+D V++VINFD P D + Y+H
Sbjct: 290 SIDVLVATDVAA-----------------------RGLDVSGVTHVINFDLPQDPESYVH 326
Query: 376 RAGRTARGKNQGTALSFVSLREQDLMN 402
R GRT R +G A +FV+ RE D ++
Sbjct: 327 RIGRTGRAGKEGAAYTFVTPREIDHLH 353
>gi|317477042|ref|ZP_07936284.1| DEAD/DEAH box helicase [Bacteroides eggerthii 1_2_48FAA]
gi|316906835|gb|EFV28547.1| DEAD/DEAH box helicase [Bacteroides eggerthii 1_2_48FAA]
Length = 428
Score = 181 bits (459), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 118/373 (31%), Positives = 204/373 (54%), Gaps = 36/373 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+ + + E T IQE++IP+IL+ +D++ A+TG+GKT A+ +P++ K L +
Sbjct: 13 LEALDAMRFDECTPIQEQSIPVILEGRDLIAVAQTGTGKTAAYLLPVLNK---LSEGGHP 69
Query: 90 QET-KALVLSPSKELCNQLHKNIQELT--MKCSRDVKCVDISEQVDVSVQEPLLVERPDI 146
+++ +V++P++EL Q+ + ++ + M S V ++ V Q+ L D+
Sbjct: 70 EDSINCIVMAPTRELAQQIDQQMEGFSYFMPVS-SVAVYGGNDGVLFEQQKRGLTLGADV 128
Query: 147 VVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
V+ATP R +AHL +DL S + I+DEAD + G+ DD+ ++KFLPK Q I+ S
Sbjct: 129 VIATPGRLIAHLSLGYVDL-SRVSYFILDEADRMLDMGFYDDIMQIVKFLPKERQTIMFS 187
Query: 207 ATLSEDVLSLKHLILRNPVILKLEEPAIA-PVSQLAHYHILAQEDEKATILYTLLKLNLV 265
AT+ + L IL NP +KL A++ P ++ + E++K I+++L
Sbjct: 188 ATMPAKIQQLAKSILNNPAEVKL---AVSKPAEKIVQAAYVCYENQKLGIIHSLFAEQTP 244
Query: 266 QGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE 325
+ + IIF ++ K ++ L+Q K++ ++S+L R +Y+F G ++++A+D
Sbjct: 245 E-RVIIFASSKLKVKEVTKALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRINILVATDI 303
Query: 326 KALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKN 385
V+RGID + VIN+D P D + Y+HR GRTAR N
Sbjct: 304 -----------------------VARGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANN 340
Query: 386 QGTALSFVSLREQ 398
G AL+FV+ +EQ
Sbjct: 341 DGVALTFVNEKEQ 353
>gi|424871855|ref|ZP_18295517.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
viciae WSM1455]
gi|393167556|gb|EJC67603.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
viciae WSM1455]
Length = 602
Score = 181 bits (459), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 117/384 (30%), Positives = 196/384 (51%), Gaps = 35/384 (9%)
Query: 20 PFTFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQK 79
P TLF +LG PT IQE AIPL+L+ +D++ A+TG+GKT AF +P+I+K
Sbjct: 58 PIVATLF--------QLGIETPTPIQEHAIPLLLEGRDLIGLAQTGTGKTAAFGLPLIEK 109
Query: 80 IINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL 139
++ ++ + T+ L+L+P++EL NQ+ +++++ K S + V V ++ Q+
Sbjct: 110 LLADERRPDNRTTRTLILAPTRELVNQIAESLKKFIRKSSLRINVV--VGGVSINKQQLQ 167
Query: 140 LVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199
L + DI+VATP R L + + + L +++ +++DEAD + G+ D++ + K +PK
Sbjct: 168 LEKGTDILVATPGRLLDLINRRAITL-TAVRYLVLDEADQMLDLGFVHDLRKIAKMVPKK 226
Query: 200 YQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTL 259
Q +L SAT+ + + L L +PV +++ P A + H +A +++K +L
Sbjct: 227 RQTMLFSATMPKAIADLAGEYLVDPVKVEVTPPGKAADKVEQYVHFVAGKNDKTELLRKS 286
Query: 260 LKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDV 319
L N G+ ++F+ T KL +LE S ++ R A+ F G
Sbjct: 287 LTEN-PDGRAMVFLRTKHGAEKLMKHLENIGYSVASIHGNKSQGQRERALKAFRDGSIKT 345
Query: 320 IIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGR 379
+IA+D A RGID VS+V N+D P Y+HR GR
Sbjct: 346 LIATDVAA-----------------------RGIDIPAVSHVYNYDLPEVPDAYVHRIGR 382
Query: 380 TARGKNQGTALSFVSLREQDLMND 403
TAR G A++F + E L+ D
Sbjct: 383 TARAGRDGIAIAFCAPDEAKLLRD 406
>gi|350264711|ref|YP_004876018.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. spizizenii
TU-B-10]
gi|349597598|gb|AEP85386.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. spizizenii
TU-B-10]
Length = 494
Score = 181 bits (459), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 117/403 (29%), Positives = 213/403 (52%), Gaps = 46/403 (11%)
Query: 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIIN 82
F L ++AI ++G+ E T IQ + IPL L NKDV+ +A+TG+GKT AF IP+++KI
Sbjct: 8 FNLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLVEKI-- 65
Query: 83 LKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVE 142
+ +A+V++P++EL Q+ + + ++ + K + I D+ Q L +
Sbjct: 66 ---NPESPNIQAIVIAPTRELAIQVSEELYKIGQ--DKRAKVLPIYGGQDIGRQIRALKK 120
Query: 143 RPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQA 202
P+I+V TP R L H+ +T+ L +++ V++DEAD + + G+ DD++++L +P +Q
Sbjct: 121 NPNIIVGTPGRLLDHINRRTIRL-NNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQT 179
Query: 203 ILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLL-- 260
+L SAT+ + + + P +K++ + VS + +++ QE +K L LL
Sbjct: 180 LLFSATMPAPIKRIAERFMTEPEHVKVKAKEMT-VSNIQQFYLEVQERKKFDTLTRLLDI 238
Query: 261 ---KLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLY 317
+L +V G+T V+ + + L+ Y + ++ +L R A+ +F +G
Sbjct: 239 QSPELAIVFGRTKRRVDELAEALNLRGYAAEG------IHGDLTQAKRMVALRKFKEGAI 292
Query: 318 DVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRA 377
+V++A+D A RG+D V++V NFD P D + Y+HR
Sbjct: 293 EVLVATDVAA-----------------------RGLDISGVTHVYNFDVPQDPESYVHRI 329
Query: 378 GRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMND 420
GRT R G A++F++ RE+ ++ A+ + R+ D M +
Sbjct: 330 GRTGRAGKTGMAMTFITPREKSMLR---AIEQTTKRKMDRMKE 369
>gi|239816848|ref|YP_002945758.1| DEAD/DEAH box helicase domain-containing protein [Variovorax
paradoxus S110]
gi|239803425|gb|ACS20492.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus S110]
Length = 486
Score = 181 bits (459), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 110/367 (29%), Positives = 197/367 (53%), Gaps = 31/367 (8%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII---NLKQTA 87
+A+A++G+ T IQE+AIP++L +DV+ A+TG+GKT AF++P++Q+++ N +
Sbjct: 16 RAVAEMGYETMTPIQEQAIPVVLSGQDVMGAAQTGTGKTAAFSLPLLQRMLKHENASTSP 75
Query: 88 QVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
+ALVL P++EL +Q+ + ++ L K + +++ + +D+ Q L + +++
Sbjct: 76 ARHPVRALVLLPTRELADQVAQQVK-LYAKYT-NLRSTVVFGGIDMKPQTLELKKGVEVL 133
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
VATP R L H++AK L + +E V++DEAD + G+ D++ +L +LPK +L SA
Sbjct: 134 VATPGRLLDHIEAKNAVL-NQVEYVVLDEADRMLDIGFLPDLQRILSYLPKQRTTLLFSA 192
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
T S ++ L L+NPV +++ P + H++ + +D++ + + + + Q
Sbjct: 193 TFSPEIKRLAGSYLQNPVTIEVARPNETASTVEQHFYSVTDDDKRRALKQIVKQRGITQ- 251
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
+FVN+ C +L LE+ + T L+ + R A+ F G D+++ +D A
Sbjct: 252 -AFVFVNSKLGCARLARSLERDGLRTTALHGDKSQDERLKALASFKAGEVDLLVCTDVAA 310
Query: 328 LETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQG 387
RG+D + V V NFD P + + Y+HR GRT R G
Sbjct: 311 -----------------------RGLDIKDVPAVFNFDIPFNAEDYVHRIGRTGRAGASG 347
Query: 388 TALSFVS 394
A+SF S
Sbjct: 348 LAVSFAS 354
>gi|254251800|ref|ZP_04945118.1| DEAD/DEAH box helicase-like [Burkholderia dolosa AUO158]
gi|124894409|gb|EAY68289.1| DEAD/DEAH box helicase-like [Burkholderia dolosa AUO158]
Length = 511
Score = 181 bits (459), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 117/386 (30%), Positives = 201/386 (52%), Gaps = 35/386 (9%)
Query: 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII- 81
F L L+AIA+ G+ PT IQ +AIP++L +DV+ A+TG+GKT +F++P+IQ+++
Sbjct: 38 FGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQRLLP 97
Query: 82 --NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL 139
N + +AL+L+P++EL +Q+ N+ ++ + VD++ Q
Sbjct: 98 QANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTP--LRSAVVFGGVDMNPQMAE 155
Query: 140 LVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199
L +I++ATP R L H++ KT +L ++I+++DEAD + G+ D++ +L LPK
Sbjct: 156 LRRGVEILIATPGRLLDHVQQKTANL-GQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 214
Query: 200 YQAILASATLSEDVLSLKHLILRNPVILKL--EEPAIAPVSQLAHYHILAQEDEKATILY 257
Q +L SAT S ++ L LRNP +++ A V+Q+ + +A+ D++A ++
Sbjct: 215 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQI--VYDVAEGDKQAAVVQ 272
Query: 258 TLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLY 317
L + L Q I+F N+ +L LE+ + ++ + R A+ F +G
Sbjct: 273 LLRERGLKQ--VIVFCNSKIGASRLARQLERDGVVASAIHGDKSQLERMQALDAFKRGEV 330
Query: 318 DVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRA 377
+ ++A+D A RG+D + VINFD P + + Y+HR
Sbjct: 331 EALVATDVAA-----------------------RGLDIAELPAVINFDLPFNAEDYVHRI 367
Query: 378 GRTARGKNQGTALSFVSLREQDLMND 403
GRT R G ALS S E+ + D
Sbjct: 368 GRTGRAGATGDALSLCSPNERKQLAD 393
>gi|449297073|gb|EMC93092.1| hypothetical protein BAUCODRAFT_77654 [Baudoinia compniacensis UAMH
10762]
Length = 496
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 123/365 (33%), Positives = 182/365 (49%), Gaps = 35/365 (9%)
Query: 32 AIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQE 91
A LG+ PT IQ AIPL L +D++ A TGSGKT AFA+P++Q +++ Q
Sbjct: 72 ACTSLGFKTPTAIQREAIPLALSGRDIIGLAETGSGKTAAFALPILQALLH-----DPQP 126
Query: 92 TKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATP 151
LVL+P++EL Q+ + + L V+C I +D+ Q L ++P IVVATP
Sbjct: 127 FFGLVLAPTRELAYQISQQFEALGSLIR--VRCAVIVGGMDMVPQAIALAKKPHIVVATP 184
Query: 152 ARALAHLK-AKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLS 210
R L HL+ K L+ SL+ +I+DEAD + + + +L+ LP+ + L SAT++
Sbjct: 185 GRLLDHLENTKGFSLR-SLKYLIMDEADRLLDLDFGPILDKILQVLPRERRTALFSATMN 243
Query: 211 EDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT- 269
+ +L LRNPV + + + V+ L +I K L L L G+T
Sbjct: 244 TKLDNLTRAALRNPVRVSISTSSYQTVANLLQQYIFIPHKHKDVYLIHL--LTEFSGQTC 301
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F TV + +L L S L+ +LP AR A+ +F G +++A+D A
Sbjct: 302 ILFTRTVTETQRLAFLLRALNFSAIPLHGQLPQSARLGALNKFRSGSRSILVATDVAA-- 359
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
RG+D V VINFD P D + Y+HR GRTAR G A
Sbjct: 360 ---------------------RGLDIPSVDLVINFDLPPDSKTYVHRVGRTARAGKSGVA 398
Query: 390 LSFVS 394
+S V+
Sbjct: 399 VSVVT 403
>gi|414886235|tpg|DAA62249.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 770
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 120/375 (32%), Positives = 192/375 (51%), Gaps = 32/375 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++A LG+ +PT IQ IPL L +D+ A TGSGKT AF++P+++++ L + +V
Sbjct: 174 VRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLERL--LFRPKRV 231
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ L+L+P++EL Q+H I++L D++C I + VQE L PDIVVA
Sbjct: 232 PAIRVLILTPTRELAAQVHSMIEKLAQFT--DIRCCLIVGGLSTKVQEVALRSMPDIVVA 289
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + HL+ L +VI+DEAD + G+ +++ +++ PK Q +L SAT+
Sbjct: 290 TPGRIIDHLRNSLSVGLEDLAVVILDEADRLLELGFSAEIQELIRMCPKRRQTMLFSATM 349
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHI---LAQEDEKATILYTLLKLNLVQ 266
+E++ L L L PV L+ +P++ + L + A+E + +L L L +
Sbjct: 350 TEEIDELIKLSLNKPVRLEA-DPSLKRPATLTEEVVRIRRARESNQEAVLLALC-LKTFK 407
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
IIF T ++LK+ + L+ L R A+ F + D +IA+D
Sbjct: 408 RSVIIFSGTKQSAHRLKIIFGLSGMKAAELHGNLTQAQRLEALELFRKQEVDFLIATDVA 467
Query: 327 ALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQ 386
A RGID V VINF P D++ Y+HR GRTAR +
Sbjct: 468 A-----------------------RGIDIVGVQTVINFACPRDVKTYLHRVGRTARAGRE 504
Query: 387 GTALSFVSLREQDLM 401
G A++FV+ ++ L+
Sbjct: 505 GYAVTFVTDDDRSLL 519
>gi|143454043|sp|Q0INC5.2|RH28_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 28
gi|77555691|gb|ABA98487.1| DEAD/DEAH box helicase family protein, expressed [Oryza sativa
Japonica Group]
gi|125579336|gb|EAZ20482.1| hypothetical protein OsJ_36091 [Oryza sativa Japonica Group]
gi|215706455|dbj|BAG93311.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 802
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 121/376 (32%), Positives = 192/376 (51%), Gaps = 32/376 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A LG+ +PT IQ IPL L +D+ A TGSGKT AF++P+++++ L + +V
Sbjct: 206 LRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLERL--LFRPKRV 263
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ L+L+P++EL Q+H I++L D++C I + VQE L PDIVVA
Sbjct: 264 PAIRVLILTPTRELAAQVHSMIEKLAQFT--DIRCCLIVGGLSTKVQEVALRSMPDIVVA 321
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + HL+ L I+I+DEAD + G+ +++ +++ P+ Q +L SAT+
Sbjct: 322 TPGRIIDHLRNSLSVGLEDLAILILDEADRLLELGFSAEIQELIRMCPRRRQTMLFSATM 381
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHI---LAQEDEKATILYTLLKLNLVQ 266
+E++ L L L PV L+ +P++ + L + A+E + +L L L +
Sbjct: 382 TEEINELVTLSLNKPVRLEA-DPSLKRPATLTEEVVRIRRAREANQEAVLLALC-LKTFK 439
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
K IIF T ++LK+ + L+ L R A+ F + D +IA+D
Sbjct: 440 DKVIIFSGTKHSAHRLKIIFGLSGMKAAELHGNLTQAQRLEALELFKKQEVDFLIATDVA 499
Query: 327 ALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQ 386
A RGID V VINF P D + Y+HR GRTAR +
Sbjct: 500 A-----------------------RGIDIVGVRTVINFSCPRDARTYLHRVGRTARAGRE 536
Query: 387 GTALSFVSLREQDLMN 402
G A++FV+ ++ L+
Sbjct: 537 GYAVTFVTDDDRSLLK 552
>gi|221308280|ref|ZP_03590127.1| hypothetical protein Bsubs1_02593 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221312602|ref|ZP_03594407.1| hypothetical protein BsubsN3_02569 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221317526|ref|ZP_03598820.1| hypothetical protein BsubsJ_02533 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221321802|ref|ZP_03603096.1| hypothetical protein BsubsS_02604 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|321314132|ref|YP_004206419.1| ATP-dependent RNA helicase [Bacillus subtilis BSn5]
gi|384174130|ref|YP_005555515.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
gi|428277910|ref|YP_005559645.1| hypothetical protein BSNT_00786 [Bacillus subtilis subsp. natto
BEST195]
gi|452916520|ref|ZP_21965143.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus subtilis MB73/2]
gi|134039178|sp|P96614.2|CSHA_BACSU RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
gi|291482867|dbj|BAI83942.1| hypothetical protein BSNT_00786 [Bacillus subtilis subsp. natto
BEST195]
gi|320020406|gb|ADV95392.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis BSn5]
gi|349593354|gb|AEP89541.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
gi|443906300|emb|CAB12265.2| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
subtilis str. 168]
gi|452114660|gb|EME05059.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus subtilis MB73/2]
Length = 494
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 117/403 (29%), Positives = 213/403 (52%), Gaps = 46/403 (11%)
Query: 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIIN 82
F L ++AI ++G+ E T IQ + IPL L NKDV+ +A+TG+GKT AF IP+++KI
Sbjct: 8 FNLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLVEKI-- 65
Query: 83 LKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVE 142
+ +A+V++P++EL Q+ + + ++ + K + I D+ Q L +
Sbjct: 66 ---NPESPNIQAIVIAPTRELAIQVSEELYKIGQ--DKRAKVLPIYGGQDIGRQIRALKK 120
Query: 143 RPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQA 202
P+I+V TP R L H+ +T+ L +++ V++DEAD + + G+ DD++++L +P +Q
Sbjct: 121 NPNIIVGTPGRLLDHINRRTIRL-NNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQT 179
Query: 203 ILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLL-- 260
+L SAT+ + + + P +K++ + VS + +++ QE +K L LL
Sbjct: 180 LLFSATMPAPIKRIAERFMTEPEHVKVKAKEMT-VSNIQQFYLEVQERKKFDTLTRLLDI 238
Query: 261 ---KLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLY 317
+L +V G+T V+ + + L+ Y + ++ +L R A+ +F +G
Sbjct: 239 QSPELAIVFGRTKRRVDELAEALNLRGYAAEG------IHGDLTQAKRMVALRKFKEGAI 292
Query: 318 DVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRA 377
+V++A+D A RG+D V++V NFD P D + Y+HR
Sbjct: 293 EVLVATDVAA-----------------------RGLDISGVTHVYNFDVPQDPESYVHRI 329
Query: 378 GRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMND 420
GRT R G A++F++ RE+ ++ A+ + R+ D M +
Sbjct: 330 GRTGRAGKTGMAMTFITPREKSMLR---AIEQTTKRKMDRMKE 369
>gi|91794376|ref|YP_564027.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
OS217]
gi|91716378|gb|ABE56304.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
OS217]
Length = 496
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 121/382 (31%), Positives = 196/382 (51%), Gaps = 29/382 (7%)
Query: 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII 81
+ L L+AIAK G+ PT IQ +AIP +L+ KDV+ A+TG+GKT F +P+++ I+
Sbjct: 5 SLGLSAALLKAIAKQGYDTPTAIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLE-IL 63
Query: 82 NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLV 141
+ + AQ + +ALVL+P++EL Q+ +++ T + +K + V + Q L
Sbjct: 64 SKGKPAQRGQVRALVLTPTRELAAQVADSVE--TYGHNLPLKSAVVFGGVSIVPQIAALK 121
Query: 142 ERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQ 201
+ DI+VATP R L + L S+LEI+++DEAD + G+ D++ VL LPK Q
Sbjct: 122 QGVDILVATPGRLLDLCNQRALSF-STLEILVLDEADRMLDMGFIRDIRKVLAMLPKQRQ 180
Query: 202 AILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLK 261
++ SAT S+D+ L ++ NPV + + P A + + + + +K ++L L+K
Sbjct: 181 NLMFSATFSDDIRELAKGLVNNPVEISV-TPRNATANTVTQWVTPVGQSDKTSVLIDLIK 239
Query: 262 LNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVII 321
N Q + ++F T ++ LE I ++ AR A+ F G V++
Sbjct: 240 DNNWQ-QVLVFSRTKHGANRIAKNLEAASIKAAAIHGNKSQGARTKALADFKAGKVQVMV 298
Query: 322 ASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTA 381
A+D A RGID + V+NFD P + Y+HR GRT
Sbjct: 299 ATDIAA-----------------------RGIDIDQLPFVVNFDLPNVSEDYVHRIGRTG 335
Query: 382 RGKNQGTALSFVSLREQDLMND 403
R G A+S V+ E L++D
Sbjct: 336 RAGASGQAVSLVADEEVKLLHD 357
>gi|167918160|ref|ZP_02505251.1| DEAD/DEAH box helicase [Burkholderia pseudomallei BCC215]
Length = 414
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 116/386 (30%), Positives = 202/386 (52%), Gaps = 35/386 (9%)
Query: 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII- 81
F L L+AIA+ G+ PT IQ +AIP++L +DV+ A+TG+GKT +F++P+IQ+++
Sbjct: 16 FGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQRLLP 75
Query: 82 --NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL 139
N + +AL+L+P++EL +Q+ N+ ++ + VD++ Q
Sbjct: 76 QANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTP--LRSAVVFGGVDMNPQMAE 133
Query: 140 LVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199
L +I++ATP R L H++ KT +L ++I+++DEAD + G+ D++ +L LPK
Sbjct: 134 LRRGVEILIATPGRLLDHVQQKTANL-GQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192
Query: 200 YQAILASATLSEDVLSLKHLILRNPVILKL--EEPAIAPVSQLAHYHILAQEDEKATILY 257
Q +L SAT S ++ L LRNP +++ A + V+Q+ + +A+ D++A ++
Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYD--VAEGDKQAAVVK 250
Query: 258 TLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLY 317
+ +L Q I+F N+ +L +E+ I ++ + R A+ F +G
Sbjct: 251 LIRDRSLKQ--VIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEI 308
Query: 318 DVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRA 377
+ ++A+D A RG+D + VINFD P + + Y+HR
Sbjct: 309 EALVATDVAA-----------------------RGLDIAELPAVINFDLPFNAEDYVHRI 345
Query: 378 GRTARGKNQGTALSFVSLREQDLMND 403
GRT R G ALS S E+ + D
Sbjct: 346 GRTGRAGASGDALSLCSPNERKQLAD 371
>gi|205372271|ref|ZP_03225085.1| hypothetical protein Bcoam_02010 [Bacillus coahuilensis m4-4]
Length = 499
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 113/373 (30%), Positives = 202/373 (54%), Gaps = 43/373 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L++I ++G+ E T IQ IPL L+ KD++ +A+TG+GKT AF IP+++K I+ K T
Sbjct: 14 LKSINRMGFEEATPIQAGTIPLSLEGKDIIGQAQTGTGKTAAFGIPLVEK-IDTKNT--- 69
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ L+++P++EL Q+ + + ++ + V+ + + D++ Q + + P I+V
Sbjct: 70 -NVQGLIIAPTRELAIQVSEELYKVG--YDKRVRVLAVYGGQDINRQIRAMKKGPHIIVG 126
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H+ +TL L + +++DEAD + + G+ DD++++LK +P+ Q +L SAT+
Sbjct: 127 TPGRLLDHINRRTLKL-DQVHTLVLDEADEMLNMGFIDDIESILKNVPEGRQTLLFSATM 185
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLL-----KLNL 264
+ + + NP +K++ + VS + Y + AQE EK IL LL +L +
Sbjct: 186 PGPIRKIAENFMTNPETVKVKSKEMT-VSLIDQYFVKAQEREKFDILARLLDTQSPELAI 244
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
V G+T V+ + K ++ Y + ++ +L R + +F +G +V++A+D
Sbjct: 245 VFGRTKRRVDELSKALSIRGYQAEG------IHGDLSQAKRSSVLRKFKEGRIEVLVATD 298
Query: 325 EKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384
A RG+D V++V N+D P D + Y+HR GRT R
Sbjct: 299 VAA-----------------------RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG 335
Query: 385 NQGTALSFVSLRE 397
+G A++FV+ RE
Sbjct: 336 KEGMAMTFVTPRE 348
>gi|386757060|ref|YP_006230276.1| DEAD/DEAH box helicase [Bacillus sp. JS]
gi|384930342|gb|AFI27020.1| DEAD/DEAH box helicase [Bacillus sp. JS]
Length = 511
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 117/403 (29%), Positives = 213/403 (52%), Gaps = 46/403 (11%)
Query: 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIIN 82
F L ++AI ++G+ E T IQ + IPL L NKDV+ +A+TG+GKT AF IP+++KI
Sbjct: 25 FNLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLVEKI-- 82
Query: 83 LKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVE 142
+ +A+V++P++EL Q+ + + ++ + K + I D+ Q L +
Sbjct: 83 ---NPESPNIQAIVIAPTRELAIQVSEELYKIGQ--DKRAKVLPIYGGQDIGRQIRALKK 137
Query: 143 RPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQA 202
P+I+V TP R L H+ +T+ L +++ V++DEAD + + G+ DD++++L +P +Q
Sbjct: 138 NPNIIVGTPGRLLDHINRRTIRL-NNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQT 196
Query: 203 ILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLL-- 260
+L SAT+ + + + P +K++ + VS + +++ QE +K L LL
Sbjct: 197 LLFSATMPAPIKRIAERFMTEPEHVKVKAKEMT-VSNIQQFYLEVQERKKFDTLTRLLDI 255
Query: 261 ---KLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLY 317
+L +V G+T V+ + + L+ Y + ++ +L R A+ +F +G
Sbjct: 256 QSPELAIVFGRTKRRVDELAEALNLRGYAAEG------IHGDLTQAKRMVALRKFKEGAI 309
Query: 318 DVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRA 377
+V++A+D A RG+D V++V NFD P D + Y+HR
Sbjct: 310 EVLVATDVAA-----------------------RGLDISGVTHVYNFDVPQDPESYVHRI 346
Query: 378 GRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMND 420
GRT R G A++F++ RE+ ++ A+ + R+ D M +
Sbjct: 347 GRTGRAGKTGMAMTFITPREKSMLR---AIEQTTKRKMDRMKE 386
>gi|392544413|ref|ZP_10291550.1| ATP-dependent RNA helicase, cold shock protein A [Pseudoalteromonas
piscicida JCM 20779]
Length = 607
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 124/387 (32%), Positives = 206/387 (53%), Gaps = 36/387 (9%)
Query: 20 PFTF-TLFCIP--LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPM 76
P TF +L P L+A+ +LG+ P+ IQ + IPL+L+ KDVL A+TG+GKT AFA+P+
Sbjct: 4 PVTFESLDLSPAILKAVEELGYKTPSEIQAQCIPLLLERKDVLGLAQTGTGKTAAFALPL 63
Query: 77 IQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQ 136
+ ++ A V++ + LVL+P++EL Q+ + Q+ K ++ V+ + + +Q
Sbjct: 64 LNQV-----DASVKQPQTLVLTPTRELAIQVAEAFQQYA-KYTKGVEVLALYGGQSYGIQ 117
Query: 137 EPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFL 196
L I+VATP R + H+ KT+DL S L +++DEAD + G+ DD++++++
Sbjct: 118 LSALRRGAQIIVATPGRLIDHINRKTIDL-SGLNALVLDEADEMLRMGFIDDVESIMEKT 176
Query: 197 PKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATIL 256
P+ Q L SAT+ + + S+ + L N +K+ P + VS + + A + I+
Sbjct: 177 PEEKQTCLFSATMPKQIQSICNKYLDNAEQVKI-TPRNSTVSTIEQVYWRATAHKNKAIV 235
Query: 257 YTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGL 316
L+ G I+FV T + +L LE+ S LN ++ +AR V + GL
Sbjct: 236 R-FLEAEDYDG-AIVFVRTRNDTVQLAELLEREGFSAAPLNGDMNQQARERTVDRLKSGL 293
Query: 317 YDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHR 376
D++IA+D A RG+D + +S V+N+D P D + Y+HR
Sbjct: 294 LDIVIATDVAA-----------------------RGLDVERLSLVVNYDIPQDCEAYVHR 330
Query: 377 AGRTARGKNQGTALSFVSLREQDLMND 403
GRT R QG A+ FV E+ L+ +
Sbjct: 331 IGRTGRAGRQGKAILFVKNNERYLLKN 357
>gi|310795114|gb|EFQ30575.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
Length = 903
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 132/394 (33%), Positives = 198/394 (50%), Gaps = 60/394 (15%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AI K G+ PT IQ + IPLI+ KDV+ ARTGSGKT AF IPMI+++ +A+V
Sbjct: 100 LRAITKKGFSVPTPIQRKTIPLIMDRKDVVGMARTGSGKTAAFVIPMIERL--RAHSAKV 157
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T+AL++SPS+EL Q K ++E + D+KC+ + + Q ++ PDIV+A
Sbjct: 158 G-TRALIMSPSRELALQTLKVVKEFSKGT--DLKCILLVGGDSMEDQFSMMASNPDIVIA 214
Query: 150 TPARALAHLKAK-TLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
TP R L HLK + LDL SS++ V+ DEAD +F G+ + +L LP Q++L SAT
Sbjct: 215 TPGRFL-HLKVEMGLDL-SSIKYVVFDEADRLFEMGFAAQLTEILHALPPSRQSLLFSAT 272
Query: 209 LSEDVLSLKHLILRNPVILKLE-EPAIAPVSQLAHYHILAQEDEKA--TILYTLLK---- 261
L ++ L++P +++L+ E ++P + A + + E E A IL L+K
Sbjct: 273 LPASLVEFARAGLQDPTLVRLDAETKVSPDLESAFFSVKGAEKEAALLHILSDLIKMPHG 332
Query: 262 ------LNLVQGK----------------TIIFVNTVDKCYKLKLYLEQFKISTCVLNSE 299
L++V K TIIF T L L + + +
Sbjct: 333 TPDGVPLDVVPSKKRKREGEGRGKPTEHSTIIFAATKHHVEYLAQLLTKAGYAVSYVYGS 392
Query: 300 LPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVS 359
L +AR F G ++++ +D A RGID ++
Sbjct: 393 LDQEARRINTENFRNGRANILVVTDVAA-----------------------RGIDIPVLA 429
Query: 360 NVINFDFPLDIQCYIHRAGRTARGKNQGTALSFV 393
NVIN+DFP + ++HR GRTAR +G A S V
Sbjct: 430 NVINYDFPPQPKVFVHRVGRTARAGQRGWAYSIV 463
>gi|387126915|ref|YP_006295520.1| cold-shock DEAD-box protein A [Methylophaga sp. JAM1]
gi|386273977|gb|AFI83875.1| Cold-shock DEAD-box protein A [Methylophaga sp. JAM1]
Length = 602
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 116/373 (31%), Positives = 196/373 (52%), Gaps = 32/373 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+ + G+ P+ IQ ++IP +L +D+L +A+TG+GKT AFA+P++ +I +LK A
Sbjct: 22 LQAVQQAGYETPSPIQAQSIPPLLAGRDLLGQAQTGTGKTAAFALPLLSRI-DLKNKA-- 78
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T+ LVL+P++EL Q+ + IQ +D + I + +Q L +P +VV
Sbjct: 79 --TQMLVLAPTRELAIQVSEAIQSYARHL-KDFHILPIYGGQSMGIQLRSLQRKPQVVVG 135
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H++ TL L LE +++DEAD + G+ DD++ +LK P+ Q L SAT+
Sbjct: 136 TPGRILDHIRRGTLKL-DKLEALVLDEADEMLRMGFIDDVETILKETPEKRQVALFSATM 194
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+ + L++PV ++++ + V+ + + K L +L++ G
Sbjct: 195 PGPIHRVAQKYLKDPVDVRIQS-KTSTVTTINQRYWQVTGMHKLDALTRILEVEDFDG-M 252
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
IIFV T + +L LE S +N ++ R + + +G D++IA+D A
Sbjct: 253 IIFVRTKNATVELAEKLEARGYSASAINGDMNQALREKTIERMKKGSIDILIATDVAA-- 310
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
RG+D + +S+V+N+D P D + Y+HR GRT R +G A
Sbjct: 311 ---------------------RGLDIERMSHVVNYDIPYDTESYVHRIGRTGRAGRKGEA 349
Query: 390 LSFVSLREQDLMN 402
+ FVS RE +++
Sbjct: 350 ILFVSPRETRMLS 362
>gi|403415272|emb|CCM01972.1| predicted protein [Fibroporia radiculosa]
Length = 782
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 115/371 (30%), Positives = 192/371 (51%), Gaps = 36/371 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
+++I LG+ +PT IQ IP+ L KD++ A TGSGKT AF IPM+++++ + +
Sbjct: 205 IKSITALGFNKPTPIQAATIPVALLGKDIVGNAVTGSGKTAAFIIPMLERLLYRDRGKKA 264
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T+ LVL P++EL Q + +L D++ + + V QE L RPD+V+A
Sbjct: 265 AATRCLVLVPTRELGVQCFEVGTKLAAHT--DIRFSLVVGGLSVKTQEATLRTRPDVVIA 322
Query: 150 TPARALAHLK---AKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
TP R + HL+ A TLD +L+I+++DEAD + S G+ D++ ++K P Q +L S
Sbjct: 323 TPGRLIDHLRNSPAFTLD---ALDILVLDEADRMLSDGFADELTEIIKSCPMSRQTMLFS 379
Query: 207 ATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHI---LAQEDEKATILYTLLKLN 263
AT+++ V L + L PV L +P + S L + +E E++ +L TL K
Sbjct: 380 ATMTDSVDELVRMSLDKPVRL-FVDPKRSTASGLVQEFVRVRAGKESERSALLVTLCKRT 438
Query: 264 LVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIAS 323
+ + IIF + +++++ + L+ +L + R A+ QF G D ++A+
Sbjct: 439 F-KSRAIIFFRSKKLAHQMRIVFRLLDMKADELHGDLSQEQRLKALQQFRDGAVDFLMAT 497
Query: 324 DEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARG 383
D SRG+D + + VIN+D P + Y+HR GRTAR
Sbjct: 498 DL-----------------------ASRGLDIKGIETVINYDMPSQLAQYLHRVGRTARA 534
Query: 384 KNQGTALSFVS 394
+G +++ V
Sbjct: 535 GKKGRSVTLVG 545
>gi|325982424|ref|YP_004294826.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas sp.
AL212]
gi|325531943|gb|ADZ26664.1| DEAD/DEAH box helicase domain protein [Nitrosomonas sp. AL212]
Length = 476
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 122/379 (32%), Positives = 209/379 (55%), Gaps = 34/379 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKI---INLKQT 86
L+AI++ G+ PT IQ++AIP+IL+ DV+ A+TG+GKT F +PM+QK+ N +
Sbjct: 17 LRAISEQGYTNPTPIQQQAIPIILKGFDVMGGAQTGTGKTAGFTLPMLQKLESHANSSTS 76
Query: 87 AQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDI 146
T+AL+L P++EL Q++++++ + +K I + V++ VQ + +I
Sbjct: 77 PAKHPTRALILVPTRELAIQVYESVRAYGKYVA--LKSAVIYDGVNIDVQIAAIRSGVEI 134
Query: 147 VVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
+VATP R L HL+ K L L S +EI+I+DEAD + G+ D+K +++ LP Q ++ S
Sbjct: 135 LVATPGRLLDHLQQKNLIL-SKIEILILDEADRMLDMGFLPDIKQIIQMLPDQRQNLMFS 193
Query: 207 ATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDE-KATILYTLLKLNLV 265
AT SE++ L IL++P+++++ + VS L + + + E + K L ++K +
Sbjct: 194 ATFSEEIKKLAGKILKSPILIEVAKQ--NSVSDLISHIVYSVESKNKQEFLIDMIKKKNL 251
Query: 266 QGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE 325
Q + +IF T L L I + V++ + R A+ F GL +++A+D
Sbjct: 252 Q-QVLIFTRTKHGADHLAQKLNSRDILSSVIHGDRNQLQRTQALDNFKCGLIRILVATDV 310
Query: 326 KALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKN 385
A RG+D + +++VINF+ P + + Y+HR GRT R
Sbjct: 311 AA-----------------------RGLDIEELTHVINFELPNNPEDYVHRIGRTGRAGA 347
Query: 386 QGTALSFVSLREQDLMNDG 404
+G A+SFVS RE+ ++ G
Sbjct: 348 KGFAISFVS-REETVLLGG 365
>gi|401428549|ref|XP_003878757.1| putative ATP-dependent RNA helicase [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322495006|emb|CBZ30309.1| putative ATP-dependent RNA helicase [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 804
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 125/381 (32%), Positives = 191/381 (50%), Gaps = 37/381 (9%)
Query: 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII 81
+F L L AI K G+ PT IQ +AIP +LQ DV+ ARTGSGKT AF IPM+
Sbjct: 26 SFNLEKPLLDAILKQGFSVPTPIQRKAIPPMLQGNDVVAMARTGSGKTAAFLIPMLN--- 82
Query: 82 NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLV 141
LK +++ + LVLSP++EL Q+ +N + D++ + + Q LL
Sbjct: 83 TLKAHSKIVGIRGLVLSPTRELSLQILRN--GFALNKFLDLRFAALVGGDSMDQQFELLA 140
Query: 142 ERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQ 201
PDIVVATP R L ++ +L L +S+ +++DEAD +F G + + A+++ LP+ Q
Sbjct: 141 SNPDIVVATPGRLLHIMEEASLHL-TSVRCLVLDEADRLFELGLQPQIGAIMQKLPESCQ 199
Query: 202 AILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLK 261
L SAT+ + L NPV+++L+ + QL L + DEK L LLK
Sbjct: 200 RALFSATMPTVLAEFTSAGLHNPVVIRLDS-EMKLSDQLKQSAFLVRNDEKVAALIVLLK 258
Query: 262 LNLVQG-------KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQ 314
L G + +IFV + L++ L + IST ++ ++ +AR AV F +
Sbjct: 259 RVLHVGEAAANNAQALIFVESKFHVEFLQMILTAYSISTSAVHGQMDQEARRLAVRSFAK 318
Query: 315 GLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYI 374
V++ +D A RG+D + NV+NF FP + + ++
Sbjct: 319 RETSVMVVTDVAA-----------------------RGLDLPLLDNVVNFSFPFNPKLFV 355
Query: 375 HRAGRTARGKNQGTALSFVSL 395
HR GR AR GTA S ++
Sbjct: 356 HRVGRVARAGRSGTAYSIMTF 376
>gi|52078994|ref|YP_077785.1| ATP-dependent RNA helicase YdbR [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|404487867|ref|YP_006711973.1| DEAD/DEAH box helicase [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|423680898|ref|ZP_17655737.1| ATP-dependent RNA helicase YdbR [Bacillus licheniformis WX-02]
gi|81691189|sp|Q65N62.1|CSHA_BACLD RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
gi|52002205|gb|AAU22147.1| probable ATP-dependent RNA helicase YdbR [Bacillus licheniformis
DSM 13 = ATCC 14580]
gi|52346868|gb|AAU39502.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus licheniformis
DSM 13 = ATCC 14580]
gi|383442004|gb|EID49713.1| ATP-dependent RNA helicase YdbR [Bacillus licheniformis WX-02]
Length = 487
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 117/401 (29%), Positives = 211/401 (52%), Gaps = 46/401 (11%)
Query: 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIIN 82
F L +AI ++G+ E T IQ + IPL L NKDV+ +A+TG+GKT AF IP+++KI
Sbjct: 8 FQLSSDLTKAIKRMGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIPLVEKI-- 65
Query: 83 LKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVE 142
+ +A+V++P++EL Q+ + + ++ + + + I D+ Q L +
Sbjct: 66 ---NPESPNIQAIVIAPTRELAIQVSEELYKIGQ--DKRARVLPIYGGQDIGRQIRALKK 120
Query: 143 RPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQA 202
P I+V TP R L H+ +T+ L+ ++ V++DEAD + + G+ +D++++L +P +Q
Sbjct: 121 NPHIIVGTPGRLLDHINRRTMRLQ-TVNTVVLDEADEMLNMGFIEDIESILSNVPAEHQT 179
Query: 203 ILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLL-- 260
+L SAT+ + + + NP +K++ + VS + +++ E +K L LL
Sbjct: 180 LLFSATMPAPIKRIAERFMTNPEHVKVKAKEMT-VSNIQQFYLEVHERKKFDTLTRLLDI 238
Query: 261 ---KLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLY 317
+L +V G+T V+ + + L+ Y + ++ +L R A+ +F QG
Sbjct: 239 QSPELAIVFGRTKRRVDELTEALNLRGYTAEG------IHGDLTQAKRMVALRKFKQGAI 292
Query: 318 DVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRA 377
+V++A+D A RG+D V++V NFD P D + Y+HR
Sbjct: 293 EVLVATDVAA-----------------------RGLDISGVTHVYNFDVPQDPESYVHRI 329
Query: 378 GRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLM 418
GRT R G A++F++ RE+D++ A+ + R+ D M
Sbjct: 330 GRTGRAGKTGMAMTFITPREKDMLR---AIEQTTKRKMDRM 367
>gi|153806359|ref|ZP_01959027.1| hypothetical protein BACCAC_00620 [Bacteroides caccae ATCC 43185]
gi|423218666|ref|ZP_17205162.1| hypothetical protein HMPREF1061_01935 [Bacteroides caccae
CL03T12C61]
gi|149131036|gb|EDM22242.1| DEAD/DEAH box helicase [Bacteroides caccae ATCC 43185]
gi|392628169|gb|EIY22204.1| hypothetical protein HMPREF1061_01935 [Bacteroides caccae
CL03T12C61]
Length = 420
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 118/371 (31%), Positives = 199/371 (53%), Gaps = 32/371 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+ + + E T IQE+AIP+IL+ KD++ A+TG+GKT AF +P++ K+ K
Sbjct: 13 LEALDAMRFDECTPIQEQAIPIILEGKDLIAVAQTGTGKTAAFLLPVLNKLSEGKHPEDA 72
Query: 90 QETKALVLSPSKELCNQLHKNIQELT-MKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
+++SP++EL Q+ + ++ + + V ++ + Q+ L D+V+
Sbjct: 73 --INCVIMSPTRELAQQIDQQMEGFSYFMPASSVAVYGGNDGILFEQQKKGLTLGADVVI 130
Query: 149 ATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
ATP R +AHL +DL S + I+DEAD + G+ DD+ ++K+LPK Q I+ SAT
Sbjct: 131 ATPGRLIAHLSLGYVDL-SKVSYFILDEADRMLDMGFYDDIMQIVKYLPKERQTIMFSAT 189
Query: 209 LSEDVLSLKHLILRNPVILKLEEPAIA-PVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
+ + L + IL NP +KL A++ P ++ + E++K I+ L ++ V
Sbjct: 190 MPAKIQQLANTILNNPSEIKL---AVSRPADKIIQAAYVCYENQKLGIIRNLF-MDEVPE 245
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
+ IIF ++ K ++ L+ K++ ++S+L R ++ F G ++++A+D
Sbjct: 246 RVIIFASSKIKVKEVTKALKSMKLNVGEMHSDLEQVQREAVMHDFKAGRINILVATDI-- 303
Query: 328 LETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQG 387
V+RGID + VINFD P D + Y+HR GRTAR N G
Sbjct: 304 ---------------------VARGIDIDDIRLVINFDVPHDSEDYVHRIGRTARANNDG 342
Query: 388 TALSFVSLREQ 398
AL+FVS +EQ
Sbjct: 343 VALTFVSEKEQ 353
>gi|167718732|ref|ZP_02401968.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
DM98]
Length = 409
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 114/384 (29%), Positives = 198/384 (51%), Gaps = 31/384 (8%)
Query: 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII- 81
F L L+AIA+ G+ PT IQ +AIP++L +DV+ A+TG+GKT +F++P+IQ+++
Sbjct: 16 FGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQRLLP 75
Query: 82 --NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL 139
N + +AL+L+P++EL +Q+ N+ ++ + VD++ Q
Sbjct: 76 QANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTP--LRSAVVFGGVDMNPQMAE 133
Query: 140 LVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199
L +I++ATP R L H++ KT +L ++I+++DEAD + G+ D++ +L LPK
Sbjct: 134 LRRGVEILIATPGRLLDHVQQKTANL-GQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192
Query: 200 YQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTL 259
Q +L SAT S ++ L LRNP +++ A + + +A+ D++A ++ +
Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKLI 252
Query: 260 LKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDV 319
+L Q I+F N+ +L +E+ I ++ + R A+ F +G +
Sbjct: 253 RDRSLKQ--VIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIEA 310
Query: 320 IIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGR 379
++A+D A RG+D + VINFD P + + Y+HR GR
Sbjct: 311 LVATDVAA-----------------------RGLDIAELPAVINFDLPFNAEDYVHRIGR 347
Query: 380 TARGKNQGTALSFVSLREQDLMND 403
T R G ALS S E+ + D
Sbjct: 348 TGRAGASGDALSLCSPNERKQLAD 371
>gi|83720702|ref|YP_441535.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
gi|83654527|gb|ABC38590.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
Length = 571
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 114/384 (29%), Positives = 197/384 (51%), Gaps = 31/384 (8%)
Query: 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII- 81
F L L+AIA+ G+ PT IQ AIP++L +DV+ A+TG+GKT +F++P+IQ+++
Sbjct: 106 FGLAAEILRAIAEQGYTTPTPIQANAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQRLLP 165
Query: 82 --NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL 139
N + +AL+L+P++EL +Q+ N+ ++ + VD++ Q
Sbjct: 166 QANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTP--LRSAVVFGGVDMNPQMAE 223
Query: 140 LVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199
L +I++ATP R L H++ KT +L ++I+++DEAD + G+ D++ +L LPK
Sbjct: 224 LRRGVEILIATPGRLLDHVQQKTANL-GQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 282
Query: 200 YQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTL 259
Q +L SAT S ++ L LRNP +++ A + + +A+ D++A ++ +
Sbjct: 283 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKLI 342
Query: 260 LKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDV 319
+L Q I+F N+ +L +E+ I ++ + R A+ F +G +
Sbjct: 343 RDRSLKQ--VIVFCNSKIGASRLARQIERDGIVAAAIHGDRSQSERMQALDAFKRGEIEA 400
Query: 320 IIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGR 379
++A+D A RG+D + VINFD P + + Y+HR GR
Sbjct: 401 LVATDVAA-----------------------RGLDIAELPAVINFDLPFNAEDYVHRIGR 437
Query: 380 TARGKNQGTALSFVSLREQDLMND 403
T R G ALS S E+ + D
Sbjct: 438 TGRAGASGDALSLCSPNERKQLAD 461
>gi|167622911|ref|YP_001673205.1| DEAD/DEAH box helicase [Shewanella halifaxensis HAW-EB4]
gi|167352933|gb|ABZ75546.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
HAW-EB4]
Length = 432
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 117/382 (30%), Positives = 200/382 (52%), Gaps = 28/382 (7%)
Query: 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII 81
+F+ L+AI++ G+ + T IQ++AIP + + +DVL A+TG+GKT AFA+P++QK++
Sbjct: 5 SFSFAPEILRAISECGYEKMTPIQQQAIPAVRRGQDVLASAQTGTGKTAAFALPILQKML 64
Query: 82 NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLV 141
+ T +AL+L+P++EL Q+ NI + D+K V + V + Q L
Sbjct: 65 DNPSTTGRSNARALILTPTRELAAQIADNINDYAKYL--DMKVVTVLGGVKMDSQATKLK 122
Query: 142 ERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQ 201
DI++ATP R L H+ A L L S+++ +++DEAD + G+ D++ +L+ + K Q
Sbjct: 123 RGADIIIATPGRLLEHIVACNLSL-SNVDFLVLDEADRMLDMGFSADIQKILQAVNKKRQ 181
Query: 202 AILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLK 261
+L SAT S V L ++++ P I+ ++ V+ + + Q ++ + + K
Sbjct: 182 NLLFSATFSTAVKQLANVMMVKPNIIAADKQNTTAVTVSQVVYPVEQRRKRELLSELIGK 241
Query: 262 LNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVII 321
N Q ++F T D KL+ L I T V++ E +R A+ +F +G V++
Sbjct: 242 KNWKQ--VLVFTATRDAADKLEKELNLDGIPTAVVHGEKAQGSRRRALREFKEGKMRVLV 299
Query: 322 ASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTA 381
A++ A RG+D Q + V+N+D P + Y+HR GRT
Sbjct: 300 ATEVAA-----------------------RGLDIQGLEYVVNYDLPFLAEDYVHRIGRTG 336
Query: 382 RGKNQGTALSFVSLREQDLMND 403
R G A+SFVS E+ + D
Sbjct: 337 RAGKSGVAISFVSREEERTLAD 358
>gi|16077525|ref|NP_388339.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
subtilis str. 168]
gi|402774703|ref|YP_006628647.1| ATP-dependent RNA helicase [Bacillus subtilis QB928]
gi|430757089|ref|YP_007210799.1| hypothetical protein A7A1_1597 [Bacillus subtilis subsp. subtilis
str. BSP1]
gi|1881268|dbj|BAA19295.1| ydbR [Bacillus subtilis]
gi|402479888|gb|AFQ56397.1| ATP-dependent RNA helicase [Bacillus subtilis QB928]
gi|430021609|gb|AGA22215.1| Hypothetical protein YdbR [Bacillus subtilis subsp. subtilis str.
BSP1]
Length = 511
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 117/403 (29%), Positives = 213/403 (52%), Gaps = 46/403 (11%)
Query: 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIIN 82
F L ++AI ++G+ E T IQ + IPL L NKDV+ +A+TG+GKT AF IP+++KI
Sbjct: 25 FNLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLVEKI-- 82
Query: 83 LKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVE 142
+ +A+V++P++EL Q+ + + ++ + K + I D+ Q L +
Sbjct: 83 ---NPESPNIQAIVIAPTRELAIQVSEELYKIGQ--DKRAKVLPIYGGQDIGRQIRALKK 137
Query: 143 RPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQA 202
P+I+V TP R L H+ +T+ L +++ V++DEAD + + G+ DD++++L +P +Q
Sbjct: 138 NPNIIVGTPGRLLDHINRRTIRL-NNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQT 196
Query: 203 ILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLL-- 260
+L SAT+ + + + P +K++ + VS + +++ QE +K L LL
Sbjct: 197 LLFSATMPAPIKRIAERFMTEPEHVKVKAKEMT-VSNIQQFYLEVQERKKFDTLTRLLDI 255
Query: 261 ---KLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLY 317
+L +V G+T V+ + + L+ Y + ++ +L R A+ +F +G
Sbjct: 256 QSPELAIVFGRTKRRVDELAEALNLRGYAAEG------IHGDLTQAKRMVALRKFKEGAI 309
Query: 318 DVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRA 377
+V++A+D A RG+D V++V NFD P D + Y+HR
Sbjct: 310 EVLVATDVAA-----------------------RGLDISGVTHVYNFDVPQDPESYVHRI 346
Query: 378 GRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMND 420
GRT R G A++F++ RE+ ++ A+ + R+ D M +
Sbjct: 347 GRTGRAGKTGMAMTFITPREKSMLR---AIEQTTKRKMDRMKE 386
>gi|167814905|ref|ZP_02446585.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
91]
Length = 411
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 116/386 (30%), Positives = 202/386 (52%), Gaps = 35/386 (9%)
Query: 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII- 81
F L L+AIA+ G+ PT IQ +AIP++L +DV+ A+TG+GKT +F++P+IQ+++
Sbjct: 16 FGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQRLLP 75
Query: 82 --NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL 139
N + +AL+L+P++EL +Q+ N+ ++ + VD++ Q
Sbjct: 76 QANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTP--LRSAVVFGGVDMNPQMAE 133
Query: 140 LVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199
L +I++ATP R L H++ KT +L ++I+++DEAD + G+ D++ +L LPK
Sbjct: 134 LRRGVEILIATPGRLLDHVQQKTANL-GQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192
Query: 200 YQAILASATLSEDVLSLKHLILRNPVILKL--EEPAIAPVSQLAHYHILAQEDEKATILY 257
Q +L SAT S ++ L LRNP +++ A + V+Q+ + +A+ D++A ++
Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYD--VAEGDKQAAVVK 250
Query: 258 TLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLY 317
+ +L Q I+F N+ +L +E+ I ++ + R A+ F +G
Sbjct: 251 LIRDRSLKQ--VIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEI 308
Query: 318 DVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRA 377
+ ++A+D A RG+D + VINFD P + + Y+HR
Sbjct: 309 EALVATDVAA-----------------------RGLDIAELPAVINFDLPFNAEDYVHRI 345
Query: 378 GRTARGKNQGTALSFVSLREQDLMND 403
GRT R G ALS S E+ + D
Sbjct: 346 GRTGRAGASGDALSLCSPNERKQLAD 371
>gi|424882925|ref|ZP_18306557.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WU95]
gi|392519288|gb|EIW44020.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WU95]
Length = 605
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 117/384 (30%), Positives = 196/384 (51%), Gaps = 35/384 (9%)
Query: 20 PFTFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQK 79
P TLF +LG PT IQE AIPL+L+ +D++ A+TG+GKT AF +P+I+K
Sbjct: 58 PIVATLF--------QLGIETPTPIQEHAIPLLLEGRDLIGLAQTGTGKTAAFGLPLIEK 109
Query: 80 IINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL 139
++ ++ + T+ L+L+P++EL NQ+ +++++ K S + V V ++ Q+
Sbjct: 110 LLADERRPDNRTTRTLILAPTRELVNQIAESLKKFIRKSSLRINVV--VGGVSINKQQLQ 167
Query: 140 LVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199
L + DI+VATP R L + + + L +++ +++DEAD + G+ D++ + K +PK
Sbjct: 168 LEKGTDILVATPGRLLDLINRRAITL-TAVRYLVLDEADQMLDLGFVHDLRKIAKMVPKK 226
Query: 200 YQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTL 259
Q +L SAT+ + + L L +PV +++ P A + H +A +++K +L
Sbjct: 227 RQTMLFSATMPKAIADLAGEYLVDPVKVEVTPPGKAADKVEQYVHFVAGKNDKTELLRKS 286
Query: 260 LKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDV 319
L N G+ ++F+ T KL +LE S ++ R A+ F G
Sbjct: 287 LTEN-PDGRAMVFLRTKHGAEKLMKHLENIGYSVASIHGNKSQGQRERALKAFRDGSIKT 345
Query: 320 IIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGR 379
+IA+D A RGID VS+V N+D P Y+HR GR
Sbjct: 346 LIATDVAA-----------------------RGIDIPAVSHVYNYDLPEVPDAYVHRIGR 382
Query: 380 TARGKNQGTALSFVSLREQDLMND 403
TAR G A++F + E L+ D
Sbjct: 383 TARAGRDGIAIAFCAPDEARLLRD 406
>gi|337278667|ref|YP_004618138.1| ATP-dependent RNA helicase [Ramlibacter tataouinensis TTB310]
gi|334729743|gb|AEG92119.1| Candidate ATP-dependent RNA helicase [Ramlibacter tataouinensis
TTB310]
Length = 486
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 111/376 (29%), Positives = 201/376 (53%), Gaps = 31/376 (8%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII---NLKQTA 87
+A+A++G+ T IQ +AIP++L +DV+ A+TG+GKT AF++P++Q+++ N +
Sbjct: 23 RAVAEMGYETMTPIQAQAIPVVLTGRDVMGAAQTGTGKTAAFSLPLLQRLLKHENSSTSP 82
Query: 88 QVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
+ALVL P++EL +Q+ + ++ L K + +++ + +D+ Q L +++
Sbjct: 83 ARHPVRALVLLPTRELADQVAQQVK-LYAKYT-NLRSAVVFGGMDMKPQTLELKRGVEVL 140
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
VATP R L H++AK L +E V++DEAD + G+ D++ +L +LPK +L SA
Sbjct: 141 VATPGRLLDHIEAKNAVL-GQVEYVVLDEADRMLDIGFLPDLQRILSYLPKQRTTLLFSA 199
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
T S ++ L + L++PV +++ P + H++ + +D++ + + + + Q
Sbjct: 200 TFSPEIKRLANSYLKDPVTIEVARPNETASTVEQHFYSVTDDDKRRALKQIVRQRGITQ- 258
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
+FVN+ C +L LE+ + T L+ + R A+ F G D+++A+D A
Sbjct: 259 -AFVFVNSKLGCARLARSLEREGLKTTALHGDKSQDERLKALAAFKAGEVDLLVATDVAA 317
Query: 328 LETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQG 387
RG+D + V V NFD P + + Y+HR GRT R G
Sbjct: 318 -----------------------RGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASG 354
Query: 388 TALSFVSLREQDLMND 403
A++FVS + L+ D
Sbjct: 355 LAVTFVSGSDGRLVAD 370
>gi|375007039|ref|YP_004980670.1| DEAD-box ATP-dependent RNA helicase cshA [Geobacillus
thermoleovorans CCB_US3_UF5]
gi|359285886|gb|AEV17570.1| DEAD-box ATP-dependent RNA helicase cshA [Geobacillus
thermoleovorans CCB_US3_UF5]
Length = 467
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 113/373 (30%), Positives = 202/373 (54%), Gaps = 43/373 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++AI ++G+ E T IQ + IPL LQNKDV+ +A+TG+GKT AF IP+++K +N+K +A
Sbjct: 14 MKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIVEK-VNVKNSA-- 70
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ALV++P++EL Q+ + + ++ + V+ + I D+ Q L + P ++V
Sbjct: 71 --VQALVVAPTRELAIQVSEELYKIG--AVKRVRVLPIYGGQDIDRQIRALKKHPHVIVG 126
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + H+ TL L+ + V++DEAD + + G+ +D++A+L +P Q +L SAT+
Sbjct: 127 TPGRIIDHINRGTLRLE-HVHTVVLDEADEMLNMGFIEDIEAILSHVPAERQTLLFSATM 185
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLL-----KLNL 264
+ + + + P ++K++ + V + Y++ E +K IL LL +L +
Sbjct: 186 PDPIRRIAERFMNEPELVKVKAKEMT-VPNIQQYYLEVHEKKKFDILTRLLDIQAPELAI 244
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
V G+T V+ + + L+ Y + ++ +L R + +F +G ++++A+D
Sbjct: 245 VFGRTKRRVDELAEALNLRGYAAEG------IHGDLSQAKRLSVLRKFKEGAIEILVATD 298
Query: 325 EKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384
A RG+D V++V NFD P D + Y+HR GRT R
Sbjct: 299 VAA-----------------------RGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAG 335
Query: 385 NQGTALSFVSLRE 397
G A++FV+ RE
Sbjct: 336 KTGVAMTFVTPRE 348
>gi|167737747|ref|ZP_02410521.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
14]
Length = 409
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 114/384 (29%), Positives = 198/384 (51%), Gaps = 31/384 (8%)
Query: 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII- 81
F L L+AIA+ G+ PT IQ +AIP++L +DV+ A+TG+GKT +F++P+IQ+++
Sbjct: 16 FGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQRLLP 75
Query: 82 --NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL 139
N + +AL+L+P++EL +Q+ N+ ++ + VD++ Q
Sbjct: 76 QANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTP--LRSAVVFGGVDMNPQMAE 133
Query: 140 LVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199
L +I++ATP R L H++ KT +L ++I+++DEAD + G+ D++ +L LPK
Sbjct: 134 LRRGVEILIATPGRLLDHVQQKTANL-GQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192
Query: 200 YQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTL 259
Q +L SAT S ++ L LRNP +++ A + + +A+ D++A ++ +
Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRNPQAIEVARSNAAASTVTQIVYDVAEGDKQAAVVKLI 252
Query: 260 LKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDV 319
+L Q I+F N+ +L +E+ I ++ + R A+ F +G +
Sbjct: 253 RDRSLKQ--VIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIEA 310
Query: 320 IIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGR 379
++A+D A RG+D + VINFD P + + Y+HR GR
Sbjct: 311 LVATDVAA-----------------------RGLDIAELPAVINFDLPFNAEDYVHRIGR 347
Query: 380 TARGKNQGTALSFVSLREQDLMND 403
T R G ALS S E+ + D
Sbjct: 348 TGRAGASGDALSLCSPNERKQLAD 371
>gi|414589947|tpg|DAA40518.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein,
partial [Zea mays]
Length = 786
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 117/368 (31%), Positives = 188/368 (51%), Gaps = 32/368 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++A LG+ +PT IQ IPL L +D+ A TGSGKT AF++P+++++ L + +V
Sbjct: 195 VRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLERL--LFRPKRV 252
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ L+L+P++EL Q+H +++L D++C I + +QE L PDIVVA
Sbjct: 253 PAIRVLILTPTRELAAQIHSMVEKLAQFT--DIRCCLIVGGLSTKIQEVALRSMPDIVVA 310
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + HL+ L +VI+DEAD + G+ +++ +++ PK Q +L SAT+
Sbjct: 311 TPGRIIDHLRNSLSVGLEDLAVVILDEADRLLELGFSAEIQELIRMCPKRRQTMLFSATM 370
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHI---LAQEDEKATILYTLLKLNLVQ 266
+E++ L L L PV L+ +P++ + L + A+E + +L L L +
Sbjct: 371 TEEIDELVKLSLNKPVRLEA-DPSLKRPATLTEEVVRIRRARESNQEAVLLALC-LKTFK 428
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
IIF T ++LK+ + L+ L R A+ F + D +IA+D
Sbjct: 429 RSVIIFSGTKQSAHRLKIIFGLSGMKAAELHGNLTQAQRLEALELFKKKEVDFLIATDVA 488
Query: 327 ALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQ 386
A RGID V VINF P D++ Y+HR GRTAR +
Sbjct: 489 A-----------------------RGIDIVGVQTVINFACPRDVKTYLHRVGRTARAGRE 525
Query: 387 GTALSFVS 394
G A++FV+
Sbjct: 526 GYAVTFVT 533
>gi|242045284|ref|XP_002460513.1| hypothetical protein SORBIDRAFT_02g029690 [Sorghum bicolor]
gi|241923890|gb|EER97034.1| hypothetical protein SORBIDRAFT_02g029690 [Sorghum bicolor]
Length = 760
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 120/375 (32%), Positives = 192/375 (51%), Gaps = 32/375 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++A LG+ +PT IQ IPL L +D+ A TGSGKT AF++P+++++ L + +V
Sbjct: 197 VRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLERL--LFRPKRV 254
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ L+L+P++EL Q+H I++L D++C I + VQE L PDIVVA
Sbjct: 255 PAIRVLILTPTRELAAQVHSMIEKLAQFT--DIRCCLIVGGLSTKVQEVALRSMPDIVVA 312
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + HL+ L +VI+DEAD + G+ +++ +++ PK Q +L SAT+
Sbjct: 313 TPGRIIDHLRNSLSVGLEDLAVVILDEADRLLELGFSAEIQELIRMCPKRRQTMLFSATM 372
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHI---LAQEDEKATILYTLLKLNLVQ 266
+E++ L L L PV L+ +P++ + L + A+E + +L L L +
Sbjct: 373 TEEIDELIKLSLNKPVRLEA-DPSLKRPATLTEEVVRIRRARESNQEAVLLALC-LKTFK 430
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
IIF T ++LK+ + L+ L R A+ F + D +IA+D
Sbjct: 431 RSVIIFSGTKQSAHRLKIVFGLSGMKAAELHGNLTQAQRLEALELFKKQEVDFLIATDVA 490
Query: 327 ALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQ 386
A RGID V VINF P D++ Y+HR GRTAR +
Sbjct: 491 A-----------------------RGIDIVGVRTVINFACPRDVKTYLHRVGRTARAGRE 527
Query: 387 GTALSFVSLREQDLM 401
G A++FV+ ++ L+
Sbjct: 528 GYAVTFVTDDDRSLL 542
>gi|115488568|ref|NP_001066771.1| Os12g0481100 [Oryza sativa Japonica Group]
gi|113649278|dbj|BAF29790.1| Os12g0481100, partial [Oryza sativa Japonica Group]
Length = 832
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 121/376 (32%), Positives = 192/376 (51%), Gaps = 32/376 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A LG+ +PT IQ IPL L +D+ A TGSGKT AF++P+++++ L + +V
Sbjct: 236 LRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLERL--LFRPKRV 293
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ L+L+P++EL Q+H I++L D++C I + VQE L PDIVVA
Sbjct: 294 PAIRVLILTPTRELAAQVHSMIEKLAQFT--DIRCCLIVGGLSTKVQEVALRSMPDIVVA 351
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + HL+ L I+I+DEAD + G+ +++ +++ P+ Q +L SAT+
Sbjct: 352 TPGRIIDHLRNSLSVGLEDLAILILDEADRLLELGFSAEIQELIRMCPRRRQTMLFSATM 411
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHI---LAQEDEKATILYTLLKLNLVQ 266
+E++ L L L PV L+ +P++ + L + A+E + +L L L +
Sbjct: 412 TEEINELVTLSLNKPVRLEA-DPSLKRPATLTEEVVRIRRAREANQEAVLLALC-LKTFK 469
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
K IIF T ++LK+ + L+ L R A+ F + D +IA+D
Sbjct: 470 DKVIIFSGTKHSAHRLKIIFGLSGMKAAELHGNLTQAQRLEALELFKKQEVDFLIATDVA 529
Query: 327 ALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQ 386
A RGID V VINF P D + Y+HR GRTAR +
Sbjct: 530 A-----------------------RGIDIVGVRTVINFSCPRDARTYLHRVGRTARAGRE 566
Query: 387 GTALSFVSLREQDLMN 402
G A++FV+ ++ L+
Sbjct: 567 GYAVTFVTDDDRSLLK 582
>gi|254578822|ref|XP_002495397.1| ZYRO0B10318p [Zygosaccharomyces rouxii]
gi|238938287|emb|CAR26464.1| ZYRO0B10318p [Zygosaccharomyces rouxii]
Length = 750
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 116/377 (30%), Positives = 202/377 (53%), Gaps = 37/377 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+ LG+ P+ IQ IP+ L KD++ A TGSGKT AF IP+I+++I + A+V
Sbjct: 249 LKALGDLGYATPSPIQGATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLI--YKPAKV 306
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQV---DVSVQEPLLVERPDI 146
T+ +VL+P++EL Q + ++ K + V + V ++ QE +L RPDI
Sbjct: 307 ASTRVIVLAPTRELAIQ----VADVGKKLGKYVNGLTFGIAVGGLNLRQQEQILKTRPDI 362
Query: 147 VVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
V+ATP R + H++ + S+E+++IDEAD + G++D++ ++ LP Q +L S
Sbjct: 363 VIATPGRFIDHIRNSSSFNVDSVEVLVIDEADRMLEEGFQDEINEIMHLLPSKRQTMLFS 422
Query: 207 ATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEK---ATILYTLLKLN 263
AT++ + L L L+ PV + + P A VS+L + ++ + +T+ Y + KL+
Sbjct: 423 ATMNSKIKQLVSLSLKRPVRVMTDPPQQA-VSKLQQEFVRIRKRDHLKPSTLFYLIKKLD 481
Query: 264 -LVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIA 322
Q + ++FV+ + ++L++ L ++ L+ L + R ++ +F
Sbjct: 482 GAAQKRMVVFVSKKEMVHRLRIILGLLGMAVAELHGSLNQEQRLQSINKF---------- 531
Query: 323 SDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTAR 382
K+LE P + T+ SRG+D + VIN+D P + Y+HR GRTAR
Sbjct: 532 ---KSLEVPVLICTDL----------ASRGLDIPKIEVVINYDMPKSFEIYLHRVGRTAR 578
Query: 383 GKNQGTALSFVSLREQD 399
+G ++SFV Q+
Sbjct: 579 AGREGRSVSFVGETSQE 595
>gi|87302313|ref|ZP_01085138.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 5701]
gi|87283238|gb|EAQ75194.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 5701]
Length = 645
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 119/380 (31%), Positives = 194/380 (51%), Gaps = 32/380 (8%)
Query: 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIIN 82
F L L A+A G+ +P+ IQ+ AIP ++ +D++ +A+TG+GKT AFA+P++ ++
Sbjct: 90 FGLGAEILAAVADCGYSDPSPIQKAAIPELMLGRDLVGQAQTGTGKTAAFALPLLARLDP 149
Query: 83 LKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVE 142
++T QV LVL+P++EL Q+ + K + V+ + I D Q L
Sbjct: 150 QQRTPQV-----LVLTPTRELALQVAEAFNGYAAKLPQ-VRVLPIYGGADFRDQIVRLKR 203
Query: 143 RPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQA 202
IVV TP R + H++ TLDL S L +++DEAD + G+ DD++ VL+ LP+ Q
Sbjct: 204 GVQIVVGTPGRVMDHMRQGTLDL-SGLRCLVLDEADEMLRMGFIDDVEWVLEQLPQQRQV 262
Query: 203 ILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKL 262
+L SAT+ ++ L L+NP + +++ A S + H++ +K L +L+
Sbjct: 263 VLFSATMPSEIRRLSRKYLQNPAEVTIQQKG-AENSTIRQRHLVVHGAQKLEALTRVLEA 321
Query: 263 NLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIA 322
+G IIF T + LEQ VLN ++P R V + G +V++A
Sbjct: 322 ESSEG-VIIFARTKAITLTVSEALEQQGYDVAVLNGDVPQNQRERTVERLRSGQVNVLVA 380
Query: 323 SDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTAR 382
+D A RG+D ++ VIN+D P D + Y+HR GRT R
Sbjct: 381 TDVAA-----------------------RGLDVDRITLVINYDIPFDSEAYVHRIGRTGR 417
Query: 383 GKNQGTALSFVSLREQDLMN 402
QG A+ F++ RE+ +
Sbjct: 418 AGRQGDAILFLTPRERRFLG 437
>gi|428164262|gb|EKX33294.1| hypothetical protein GUITHDRAFT_81602 [Guillardia theta CCMP2712]
Length = 679
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 114/378 (30%), Positives = 192/378 (50%), Gaps = 42/378 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A++ LG+++PT+IQ IP+ LQ KDV +RTGSGKT AFA+P+++++ L + +V
Sbjct: 125 LKAVSSLGFIKPTVIQSMVIPVALQGKDVCASSRTGSGKTAAFALPILERL--LYRPRRV 182
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T+ LVL+P++EL Q H +++L D++C + V +QE L ++PD+VVA
Sbjct: 183 AATRVLVLTPTRELAVQAHAMMEKLA--AFTDIRCYIVIGGVKNQLQETELRKKPDVVVA 240
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + HL+ +LEI+++DEAD + G+ ++++ ++K P+ Q +L SAT+
Sbjct: 241 TPGRMIDHLRNAPGIGFEALEILVLDEADRLLEMGFTEEVQELVKMCPQQRQTMLFSATM 300
Query: 210 SEDVLSLKHLILRNPVILKLE------------EPAIAPVSQLAHYHILAQEDEK--ATI 255
+ DV L LR PV + + P S L + + +E EK I
Sbjct: 301 THDVDKLAAFSLRRPVRVTADGSIRTDETQGTLNKVAVPSSLLQEFVRIRKEHEKDREAI 360
Query: 256 LYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQG 315
L L +TI+F + ++L++ + L+ L R A+ F +
Sbjct: 361 LLCLCTRTF-HKRTIVFCREKRRAHRLRIIFGLLGLRVEELHGNLTQAQRLEALENFKEE 419
Query: 316 LYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIH 375
D ++A+D RG+D + V V+N + P ++ Y+H
Sbjct: 420 KSDFLLATDL-----------------------AGRGLDIKGVDVVVNLEVPRNLAEYVH 456
Query: 376 RAGRTARGKNQGTALSFV 393
R GRTAR +G A++
Sbjct: 457 RVGRTARAGRKGRAVTLA 474
>gi|423306897|ref|ZP_17284896.1| hypothetical protein HMPREF1072_03836 [Bacteroides uniformis
CL03T00C23]
gi|423308519|ref|ZP_17286509.1| hypothetical protein HMPREF1073_01259 [Bacteroides uniformis
CL03T12C37]
gi|392677982|gb|EIY71394.1| hypothetical protein HMPREF1072_03836 [Bacteroides uniformis
CL03T00C23]
gi|392686960|gb|EIY80258.1| hypothetical protein HMPREF1073_01259 [Bacteroides uniformis
CL03T12C37]
Length = 428
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 118/372 (31%), Positives = 200/372 (53%), Gaps = 34/372 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+ + + E T IQE++IP+IL+ +D++ A+TG+GKT A+ +P++ K+ A
Sbjct: 13 LEALDAMRFEECTPIQEKSIPVILEGRDLIAVAQTGTGKTAAYLLPILNKLSEGGHPADA 72
Query: 90 QETKALVLSPSKELCNQLHKNIQELT--MKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
+V++P++EL Q+ + ++ + M S V ++ V Q+ L D+V
Sbjct: 73 --INCIVMAPTRELAQQIDQQMEGFSYFMPVS-SVAVYGGNDGVLFEQQKRGLTLGADVV 129
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
+ATP R +AHL +DL S + I+DEAD + G+ DD+ ++KFLPK Q I+ SA
Sbjct: 130 IATPGRLIAHLSLGYVDL-SRVSYFILDEADRMLDMGFYDDIMQIVKFLPKERQTIMFSA 188
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIA-PVSQLAHYHILAQEDEKATILYTLLKLNLVQ 266
T+ + L IL NP +KL A++ P ++ + E++K I+ +L +
Sbjct: 189 TMPAKIQQLAGNILNNPAEVKL---AVSKPAEKIVQAAYVCYENQKLGIIRSLFAEETPE 245
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
+ IIF ++ K ++ L+Q K++ ++S+L R +Y+F G ++++A+D
Sbjct: 246 -RVIIFASSKLKVKEVTKALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRINILVATDI- 303
Query: 327 ALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQ 386
V+RGID + VIN+D P D + Y+HR GRTAR N
Sbjct: 304 ----------------------VARGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANND 341
Query: 387 GTALSFVSLREQ 398
G A++FVS +EQ
Sbjct: 342 GVAITFVSEKEQ 353
>gi|226509858|ref|NP_001147574.1| ATP-dependent RNA helicase DRS1 [Zea mays]
gi|195612276|gb|ACG27968.1| ATP-dependent RNA helicase DRS1 [Zea mays]
Length = 770
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 120/375 (32%), Positives = 192/375 (51%), Gaps = 32/375 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++A LG+ +PT IQ IPL L +D+ A TGSGKT AF++P+++++ L + +V
Sbjct: 174 VRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLERL--LFRPKRV 231
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ L+L+P++EL Q+H I++L D++C I + VQE L PDIVVA
Sbjct: 232 PAIRVLILTPTRELAAQVHSMIEKLAQFT--DIRCCLIVGGLSTKVQEVALRSMPDIVVA 289
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + HL+ L +VI+DEAD + G+ +++ +++ PK Q +L SAT+
Sbjct: 290 TPGRIIDHLRNSLSVGLEDLAVVILDEADRLLELGFSAEIQELIRMCPKRRQTMLFSATM 349
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHI---LAQEDEKATILYTLLKLNLVQ 266
+E++ L L L PV L+ +P++ + L + A+E + +L L L +
Sbjct: 350 TEEIDELIKLSLNKPVRLEA-DPSLKRPATLTEEVVRIRRARESNQEAVLLALC-LKTFK 407
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
IIF T ++LK+ + L+ L R A+ F + D +IA+D
Sbjct: 408 RSVIIFSGTKQSAHRLKIIFGLSGMKAAELHGNLTQAQRLEALELFRKQEVDFLIATDVA 467
Query: 327 ALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQ 386
A RGID V VINF P D++ Y+HR GRTAR +
Sbjct: 468 A-----------------------RGIDIVGVQTVINFACPRDVKTYLHRVGRTARAGRE 504
Query: 387 GTALSFVSLREQDLM 401
G A++FV+ ++ L+
Sbjct: 505 GYAVTFVTDDDRSLL 519
>gi|323525320|ref|YP_004227473.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
CCGE1001]
gi|323382322|gb|ADX54413.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1001]
Length = 486
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 113/388 (29%), Positives = 199/388 (51%), Gaps = 34/388 (8%)
Query: 22 TFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQ 78
TF F + L+A+ + G+ PT IQ +AIP++L +DV+ A+TG+GKT +F++P+IQ
Sbjct: 12 TFDQFGLAPDILKAVKESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 79 KIINLKQTAQV---QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSV 135
+++ T+ +AL+L+P++EL +Q+ N+Q + ++ + VD++
Sbjct: 72 RLLPHASTSASPARHPVRALILTPTRELADQVAANVQSYAKHTA--LRSAVVFGGVDMNP 129
Query: 136 QEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKF 195
Q L +I++ATP R L H++ KT +L ++I+++DEAD + G+ D++ +L
Sbjct: 130 QSDQLRRGVEILIATPGRLLDHVQQKTANL-GQVQILVLDEADRMLDMGFLPDLQRILNL 188
Query: 196 LPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATI 255
LPK Q +L SAT S ++ L LRNP +++ + + +A+ D+ +
Sbjct: 189 LPKERQTLLFSATFSGEIKKLAATYLRNPQTIEVARSNSTATNVTQIVYEVAEGDKTGAV 248
Query: 256 LYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQG 315
+ + + NL Q I+F N+ +L LE+ + ++ + R A+ F +G
Sbjct: 249 VQLIRERNLKQ--VIVFCNSKIGASRLARSLERDGVVATAIHGDRSQNERMQALDAFKRG 306
Query: 316 LYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIH 375
+ ++A+D A RG+D + VINFD P + + Y+H
Sbjct: 307 EIEALVATDVAA-----------------------RGLDIAELPAVINFDLPFNAEDYVH 343
Query: 376 RAGRTARGKNQGTALSFVSLREQDLMND 403
R GRT R G ALS S E+ + D
Sbjct: 344 RIGRTGRAGASGDALSLFSPNEKKQLAD 371
>gi|56418761|ref|YP_146079.1| ATP-dependent RNA helicase [Geobacillus kaustophilus HTA426]
gi|81675946|sp|Q5L3G9.1|CSHA_GEOKA RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
gi|56378603|dbj|BAD74511.1| ATP-dependent RNA helicase [Geobacillus kaustophilus HTA426]
Length = 467
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 113/373 (30%), Positives = 202/373 (54%), Gaps = 43/373 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++AI ++G+ E T IQ + IPL LQNKDV+ +A+TG+GKT AF IP+++K +N+K +A
Sbjct: 14 MKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIVEK-VNVKNSA-- 70
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ALV++P++EL Q+ + + ++ + V+ + I D+ Q L + P ++V
Sbjct: 71 --VQALVVAPTRELAIQVSEELYKIG--AVKRVRVLPIYGGQDIERQIRALKKHPHVIVG 126
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + H+ TL L+ + V++DEAD + + G+ +D++A+L +P Q +L SAT+
Sbjct: 127 TPGRIIDHINRGTLRLE-HVHTVVLDEADEMLNMGFIEDIEAILSHVPAERQTLLFSATM 185
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLL-----KLNL 264
+ + + + P ++K++ + V + Y++ E +K IL LL +L +
Sbjct: 186 PDPIRRIAERFMNEPELVKVKAKEMT-VPNIQQYYLEVHEKKKFDILTRLLDIQAPELAI 244
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
V G+T V+ + + L+ Y + ++ +L R + +F +G ++++A+D
Sbjct: 245 VFGRTKRRVDELAEALNLRGYAAEG------IHGDLSQAKRLSVLRKFKEGAIEILVATD 298
Query: 325 EKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384
A RG+D V++V NFD P D + Y+HR GRT R
Sbjct: 299 VAA-----------------------RGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAG 335
Query: 385 NQGTALSFVSLRE 397
G A++FV+ RE
Sbjct: 336 KTGVAMTFVTPRE 348
>gi|402305768|ref|ZP_10824827.1| cold-shock DEAD-box protein A [Haemophilus sputorum HK 2154]
gi|400376881|gb|EJP29768.1| cold-shock DEAD-box protein A [Haemophilus sputorum HK 2154]
Length = 606
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 117/389 (30%), Positives = 195/389 (50%), Gaps = 35/389 (8%)
Query: 18 ELPFTFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAI 74
E TF +P L A+ ++G++ P+ IQ+ IP +L+ +DVL A+TGSGKT AF++
Sbjct: 4 ESQITFADLGLPQSILDAVNQIGFVTPSPIQQETIPHLLEGRDVLGMAQTGSGKTAAFSL 63
Query: 75 PMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVS 134
P++ KI + + LV++P++EL Q+ ++ T K + V+ V +
Sbjct: 64 PLLSKI-----DPNARHPQMLVMAPTRELAIQVADACEQFT-KNMKGVRVVTVYGGQRYD 117
Query: 135 VQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLK 194
+Q L + +VV TP R L H++ TLDL S+L+ +++DEAD + G+ DD++ V+
Sbjct: 118 IQLRALKQGSQVVVGTPGRILDHIRRGTLDL-SALQSIVLDEADEMLRMGFIDDVETVMA 176
Query: 195 FLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKAT 254
LP+ +Q L SAT+ E + + ++NP +K++ + + + L K
Sbjct: 177 ELPENHQTALFSATMPEPIRRITKRFMKNPQEVKIKATQRS-APDITQSYWLVNGFRKND 235
Query: 255 ILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQ 314
L L++ IIF T + E+ T LN ++ +AR + +
Sbjct: 236 ALLRFLEVEEFDA-AIIFTRTKTGTVDITELCERNGFRTAALNGDMTQQAREQTLDKLKS 294
Query: 315 GLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYI 374
G D+++A+D A RGID + +S V+N+D PLD + Y+
Sbjct: 295 GRLDILVATDVAA-----------------------RGIDIERISLVVNYDIPLDAESYV 331
Query: 375 HRAGRTARGKNQGTALSFVSLREQDLMND 403
HR GRT R G AL FV RE+ L+ +
Sbjct: 332 HRIGRTGRAGRSGRALLFVEPRERRLLRN 360
>gi|301110278|ref|XP_002904219.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
gi|262096345|gb|EEY54397.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
Length = 758
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 111/373 (29%), Positives = 193/373 (51%), Gaps = 42/373 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++AI+ +G+ +PT IQ+RAIP+ L KD+ A+TGSGKT AF +P+++++ ++ +V
Sbjct: 143 MRAISHIGFEKPTPIQQRAIPIALTGKDICASAQTGSGKTAAFLLPILERLQF--RSRRV 200
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
Q T+ +++ P +EL Q +++L D+ C + + QE L RPD+VV
Sbjct: 201 QSTRVMIICPVRELATQCQSMLEQLARFT--DITCSLAVGGLPLKAQEAELRNRPDVVVC 258
Query: 150 TPARALAHLK-AKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
TP R + HL+ +K++ + LEI+++DEAD + G+ +++ +++ P Q +L SAT
Sbjct: 259 TPGRMIDHLRNSKSVHM-DDLEILVLDEADRLLELGFTEEVLELVRMCPVQRQTMLFSAT 317
Query: 209 LSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILA-------QEDEKATILYTLLK 261
++ V L L ++ PV + + P+ +A + + +ED++ IL L
Sbjct: 318 MTSKVDQLIDLSMKRPVRISTD-----PLFDMAKHLVQEFVRIRPNREDDREAILLALCT 372
Query: 262 LNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVII 321
+ TI+F+ T +++ + I L+ L + R A+ +F G DV++
Sbjct: 373 RTF-RSNTIVFMETKSHAHRMMIIFGLAGIKAAELHGNLQQRERLEALQKFRDGTVDVLL 431
Query: 322 ASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTA 381
+D A RGID + V VIN++ P DI Y+HR GRTA
Sbjct: 432 CTDIAA-----------------------RGIDVRGVHAVINYEMPKDITTYVHRVGRTA 468
Query: 382 RGKNQGTALSFVS 394
R G A++ S
Sbjct: 469 RAGRNGRAVTLTS 481
>gi|167763057|ref|ZP_02435184.1| hypothetical protein BACSTE_01423 [Bacteroides stercoris ATCC
43183]
gi|167699397|gb|EDS15976.1| DEAD/DEAH box helicase [Bacteroides stercoris ATCC 43183]
Length = 430
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 118/373 (31%), Positives = 203/373 (54%), Gaps = 36/373 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+ + + E T IQE++IP+IL+ +D++ A+TG+GKT A+ +P++ K L +
Sbjct: 13 LEALDAMRFDECTPIQEKSIPVILEGRDLIAVAQTGTGKTAAYLLPILNK---LSEGGHP 69
Query: 90 QET-KALVLSPSKELCNQLHKNIQELT--MKCSRDVKCVDISEQVDVSVQEPLLVERPDI 146
+++ +V++P++EL Q+ + ++ + M S V ++ V Q+ L D+
Sbjct: 70 EDSINCIVMAPTRELAQQIDQQMEGFSYFMPVS-SVAVYGGNDGVLFEQQKRGLTLGADV 128
Query: 147 VVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
V+ATP R +AHL +DL S + I+DEAD + G+ DD+ ++KFLPK Q I+ S
Sbjct: 129 VIATPGRLIAHLSLGYVDL-SRVSYFILDEADRMLDMGFYDDIMQIVKFLPKERQTIMFS 187
Query: 207 ATLSEDVLSLKHLILRNPVILKLEEPAIA-PVSQLAHYHILAQEDEKATILYTLLKLNLV 265
AT+ + L IL NP +KL A++ P ++ + E++K I+ +L
Sbjct: 188 ATMPAKIQQLAQNILHNPAEVKL---AVSKPAEKIVQAAYICYENQKLGIIRSLFAEQTP 244
Query: 266 QGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE 325
+ + IIF ++ K ++ L+Q K++ ++S+L R +Y+F G ++++A+D
Sbjct: 245 E-RVIIFASSKLKVKEVAKALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRINILVATDI 303
Query: 326 KALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKN 385
V+RGID + VIN+D P D + Y+HR GRTAR N
Sbjct: 304 -----------------------VARGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANN 340
Query: 386 QGTALSFVSLREQ 398
G AL+FV+ +EQ
Sbjct: 341 DGVALTFVNEKEQ 353
>gi|167622568|ref|YP_001672862.1| DEAD/DEAH box helicase [Shewanella halifaxensis HAW-EB4]
gi|167352590|gb|ABZ75203.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
HAW-EB4]
Length = 625
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 115/372 (30%), Positives = 193/372 (51%), Gaps = 32/372 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++A+ LG+ +PT IQ +I ++ NKD+L +A+TG+GKTGAFA+P++ I Q+
Sbjct: 18 VRALDDLGYEKPTPIQAASIEPLMANKDILGQAQTGTGKTGAFALPLLNSIDPNTNAPQI 77
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
LVL+P++EL Q+ + K + + + I + Q L P I+V
Sbjct: 78 -----LVLAPTRELAVQVAEAFASYA-KYMKGLHVLPIYGGQSMQQQLNALRRGPQIIVG 131
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + H++ TL L +L+ +++DEAD + G+ DD++ +L+ PK Q L SAT+
Sbjct: 132 TPGRVMDHMRRGTLKL-DTLKAMVLDEADEMLKMGFIDDIEWILEHTPKTRQLALFSATM 190
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + + + L NPV +K+ + V + + + K L +L++ +G
Sbjct: 191 PEQIKRVANKYLDNPVHVKIAA-TTSTVETIEQRFVQVSQHNKLEALVRVLEVEKTEG-I 248
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
IIFV T + C +L LE ++ L+ ++ +AR A+ Q +G D+IIA+D A
Sbjct: 249 IIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAIDQLKRGQLDIIIATDVAA-- 306
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
RG+D + + +V+N+D P D + Y+HR GRT R G A
Sbjct: 307 ---------------------RGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMA 345
Query: 390 LSFVSLREQDLM 401
+ FV+ RE ++
Sbjct: 346 ILFVTHREMRML 357
>gi|375308018|ref|ZP_09773305.1| dead/deah box helicase domain-containing protein [Paenibacillus sp.
Aloe-11]
gi|375080349|gb|EHS58570.1| dead/deah box helicase domain-containing protein [Paenibacillus sp.
Aloe-11]
Length = 526
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 116/374 (31%), Positives = 203/374 (54%), Gaps = 35/374 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
+QAI +LG+ E T IQ ++IP+ LQ KD++ +A+TG+GKT AF IP+I KI
Sbjct: 14 IQAITELGFEEATPIQAKSIPIALQGKDMIGQAQTGTGKTAAFGIPLISKIAR-----ND 68
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
++ +AL+++P++EL Q+ + I++L+ + ++ + I D+ Q L ++P I++
Sbjct: 69 EKIRALIMAPTRELAIQVAEEIEKLSR--FKGLRTLPIYGGQDIVRQIRALKKKPQIIIG 126
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H+ KT+ L+ + V++DEAD + G+ +D++++LK +P Q +L SAT+
Sbjct: 127 TPGRLLDHINRKTIKLE-DVNTVVLDEADEMLDMGFMEDIQSILKQVPDERQTMLFSATM 185
Query: 210 SEDVLSLKHLILRNPV-ILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGK 268
++ L L++P + + + AP+ + A+ + E +K L L+ + +
Sbjct: 186 PPNIKRLAEQFLKDPEHVSVIPKQVSAPLIEQAYIEV--PERQKFEALSRLIDMESPE-L 242
Query: 269 TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL 328
I+F T + +L L++ S L+ +L R + +F G DV++A+D A
Sbjct: 243 AIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVLVATDVAA- 301
Query: 329 ETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGT 388
RG+D V++V+NFD P D + Y+HR GRT R +G
Sbjct: 302 ----------------------RGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGE 339
Query: 389 ALSFVSLREQDLMN 402
A SFV+ RE D ++
Sbjct: 340 AWSFVTPREIDHLH 353
>gi|163750312|ref|ZP_02157553.1| ATP-dependent RNA helicase SrmB [Shewanella benthica KT99]
gi|161329984|gb|EDQ00969.1| ATP-dependent RNA helicase SrmB [Shewanella benthica KT99]
Length = 421
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 120/372 (32%), Positives = 190/372 (51%), Gaps = 29/372 (7%)
Query: 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIIN 82
F L I L+++ +G +PT IQ++ IPL ++ KD+L RA TG+GKT +F +P IQ II+
Sbjct: 17 FLLDPILLESLKAMGHKKPTTIQQQTIPLAMEQKDILARAPTGTGKTASFLLPAIQHIID 76
Query: 83 LKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVE 142
+ Q + LVL+P++EL +Q+H+ L+ D+ V I+ + QE L
Sbjct: 77 FPRRFSGQ-ARVLVLTPTRELASQIHRYASHLSTGL--DLNIVIITGGMPYGPQEEALKN 133
Query: 143 RPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQA 202
DI+VATP R + +L + + +E+ +IDEAD + G+ ++ + Q
Sbjct: 134 NVDILVATPGRLMEYLDKGNFNAE-EVEVFVIDEADRMLDMGFSAAVETLAIESVGRKQT 192
Query: 203 ILASATL-SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLK 261
+L SATL DV H +L +PV ++ E P HI ++ K +L +L+
Sbjct: 193 MLFSATLEGSDVGRFSHQLLTDPVKVEAEAPRSEKAKIHQWIHIADNKEHKFAMLCNILR 252
Query: 262 LNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVII 321
V +TI+FV T + L+ L++ I+ + ++ K R A+ +F +G V++
Sbjct: 253 QEDVT-RTIVFVKTREGVASLEGLLQREGITCSFMRGDMEQKQRFQALGRFTKGEVSVLL 311
Query: 322 ASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTA 381
A+D A RGID +S+VINFD P Y+HR GRTA
Sbjct: 312 ATDVAA-----------------------RGIDVDNISHVINFDMPRSADTYVHRIGRTA 348
Query: 382 RGKNQGTALSFV 393
R +GTA+S V
Sbjct: 349 RAGAKGTAISLV 360
>gi|388567718|ref|ZP_10154148.1| DEAD/DEAH box helicase domain protein [Hydrogenophaga sp. PBC]
gi|388265047|gb|EIK90607.1| DEAD/DEAH box helicase domain protein [Hydrogenophaga sp. PBC]
Length = 482
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 113/376 (30%), Positives = 203/376 (53%), Gaps = 31/376 (8%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII---NLKQTA 87
+A+A++G+ T IQ +AIP +L +DV+ A+TG+GKT AF++P++Q+++ N +
Sbjct: 16 KAVAEMGYETMTPIQAQAIPQVLTGRDVMGAAQTGTGKTAAFSLPLLQRLLKHENASTSP 75
Query: 88 QVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
+ALVL P++EL +Q+ + ++ L K ++ ++ + +D+ Q L + +++
Sbjct: 76 ARHPVRALVLLPTRELADQVAEQVK-LYAKYTQ-LRSTVVFGGMDMKPQTLELKKGVEVL 133
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
VATP R L H++AK L + +E V++DEAD + G+ D++ +L +LPK +L SA
Sbjct: 134 VATPGRLLDHIEAKNCVL-NQVEYVVLDEADRMLDIGFLPDLQRILSYLPKQRTTLLFSA 192
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
T S ++ L + L++P+ +++ + H++ + +D++ T+ L L Q
Sbjct: 193 TFSPEIKRLANSYLQDPITVEVARSNATASTVEQHFYRVDDDDKRGTLRQILRDRGLKQA 252
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
+FVN+ C +L LE+ ++T L+ + R A+ F QG D+++ +D A
Sbjct: 253 --FVFVNSKLGCARLARSLERDGLNTAALHGDKSQDERLKALDAFKQGNVDLLVCTDVAA 310
Query: 328 LETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQG 387
RG+D + V V NFD P + + Y+HR GRT R G
Sbjct: 311 -----------------------RGLDIKDVPAVFNFDIPFNAEDYVHRIGRTGRAGASG 347
Query: 388 TALSFVSLREQDLMND 403
A+SFVS R+ L+ +
Sbjct: 348 LAVSFVSGRDARLVGE 363
>gi|116872279|ref|YP_849060.1| ATP-dependent RNA helicase [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|116741157|emb|CAK20277.1| ATP-dependent RNA helicase [Listeria welshimeri serovar 6b str.
SLCC5334]
Length = 518
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 110/373 (29%), Positives = 200/373 (53%), Gaps = 43/373 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++++ ++G+ E T IQE+ IPL L+ KD++ +A+TG+GKT AF +PMI KI Q
Sbjct: 14 VKSVNRMGFEEATPIQEKTIPLGLEGKDLIGQAQTGTGKTAAFGLPMIHKIDQKSNNVQ- 72
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
AL+++P++EL Q+ + + +L+ + V+ + + D+S Q L + P IVV
Sbjct: 73 ----ALIIAPTRELAIQVSEELYKLS--YDKHVRVLAVYGGSDISRQIRSLKKNPQIVVG 126
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H+ +TL L +E +++DEAD + + G+ DD++ +LK +P Q +L SAT+
Sbjct: 127 TPGRILDHINRRTLKL-DHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLLFSATM 185
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLL-----KLNL 264
+ + + + +P +++++ + + + + + E EK +L LL +L +
Sbjct: 186 PDPIRRIGERFMHSPELIRIKAKEMTALL-IEQFFVKVHEKEKFDVLSRLLDVQAPELAI 244
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
V G+T V+ + + ++ Y+ + ++ +L R + +F +G DV++A+D
Sbjct: 245 VFGRTKRRVDELSRALDMRGYVAEG------IHGDLTQAKRMSVLRKFKEGKIDVLVATD 298
Query: 325 EKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384
A RG+D V++V N+D P D + Y+HR GRT R
Sbjct: 299 VAA-----------------------RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG 335
Query: 385 NQGTALSFVSLRE 397
+G A++FV RE
Sbjct: 336 KEGMAITFVQPRE 348
>gi|414589946|tpg|DAA40517.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 773
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 117/368 (31%), Positives = 188/368 (51%), Gaps = 32/368 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++A LG+ +PT IQ IPL L +D+ A TGSGKT AF++P+++++ L + +V
Sbjct: 179 VRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLERL--LFRPKRV 236
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ L+L+P++EL Q+H +++L D++C I + +QE L PDIVVA
Sbjct: 237 PAIRVLILTPTRELAAQIHSMVEKLAQFT--DIRCCLIVGGLSTKIQEVALRSMPDIVVA 294
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + HL+ L +VI+DEAD + G+ +++ +++ PK Q +L SAT+
Sbjct: 295 TPGRIIDHLRNSLSVGLEDLAVVILDEADRLLELGFSAEIQELIRMCPKRRQTMLFSATM 354
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHI---LAQEDEKATILYTLLKLNLVQ 266
+E++ L L L PV L+ +P++ + L + A+E + +L L L +
Sbjct: 355 TEEIDELVKLSLNKPVRLEA-DPSLKRPATLTEEVVRIRRARESNQEAVLLALC-LKTFK 412
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
IIF T ++LK+ + L+ L R A+ F + D +IA+D
Sbjct: 413 RSVIIFSGTKQSAHRLKIIFGLSGMKAAELHGNLTQAQRLEALELFKKKEVDFLIATDVA 472
Query: 327 ALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQ 386
A RGID V VINF P D++ Y+HR GRTAR +
Sbjct: 473 A-----------------------RGIDIVGVQTVINFACPRDVKTYLHRVGRTARAGRE 509
Query: 387 GTALSFVS 394
G A++FV+
Sbjct: 510 GYAVTFVT 517
>gi|227206264|dbj|BAH57187.1| AT4G16630 [Arabidopsis thaliana]
Length = 617
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 122/377 (32%), Positives = 193/377 (51%), Gaps = 34/377 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A LG+ +PT IQ IPL L +D+ A TGSGKT AFA+P ++++ L + +V
Sbjct: 117 LRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLERL--LFRPKRV 174
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T+ L+L+P++EL Q+H IQ L D+KC I + V QE +L PDIVVA
Sbjct: 175 FATRVLILTPTRELAVQIHSMIQNLAQFT--DIKCGLIVGGLSVREQEVVLRSMPDIVVA 232
Query: 150 TPARALAHLK-AKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
TP R + HL+ + ++DL L ++I+DEAD + G+ ++ +++ PK Q +L SAT
Sbjct: 233 TPGRMIDHLRNSMSVDL-DDLAVLILDEADRLLQTGFATEITELVRLCPKRRQTMLFSAT 291
Query: 209 LSEDVLSLKHLILRNPVILKLEEPAIAP---VSQLAHYHILAQEDEKATILYTLLKLNLV 265
++E+V L L L P+ L + A P ++ + +++A +L L
Sbjct: 292 MTEEVKELVKLSLNKPLRLSADPSARRPPGLTEEVVRIRRTREANQEAVLLS--LCTRTF 349
Query: 266 QGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE 325
+ K IIF T ++LK+ + L+ L R ++ F + D +IA+D
Sbjct: 350 KSKVIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRKQEVDFLIATDV 409
Query: 326 KALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKN 385
A RG+D V VIN+ P +I Y+HR GRTAR
Sbjct: 410 AA-----------------------RGLDIIGVQTVINYACPREIDSYVHRVGRTARAGR 446
Query: 386 QGTALSFVSLREQDLMN 402
+G A++FV+ ++ L+
Sbjct: 447 EGYAVTFVTDSDRSLLK 463
>gi|218780301|ref|YP_002431619.1| DEAD/DEAH box helicase [Desulfatibacillum alkenivorans AK-01]
gi|218761685|gb|ACL04151.1| DEAD/DEAH box helicase domain protein [Desulfatibacillum
alkenivorans AK-01]
Length = 430
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 116/365 (31%), Positives = 192/365 (52%), Gaps = 37/365 (10%)
Query: 32 AIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQE 91
I+ G+ PT IQE+AIP ++Q +D++ A+TG+GKT AF +P++ +++
Sbjct: 15 GISAAGYSTPTPIQEKAIPQVMQGRDLMGLAQTGTGKTAAFVLPILHRLMQKPGNG---- 70
Query: 92 TKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATP 151
+AL+++P++EL Q H+ I T+ ++K V + V++ Q L ++ DIVVA P
Sbjct: 71 VRALIIAPTRELAEQTHEAIN--TLGAHTNLKSVSVYGGVNLQRQVKQL-KQSDIVVACP 127
Query: 152 ARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLP-KLYQAILASATLS 210
R L H+ K +DL S +E++++DEAD +F G+ D++ +L FLP K Q ++ SAT+
Sbjct: 128 GRLLDHIGRKNVDL-SRVEMLVLDEADQMFDMGFLPDIRKILTFLPRKGRQTLMFSATMP 186
Query: 211 EDVLSLKHLILRNPVILKLEEPAIAPVSQLAH-YHILAQEDEKATILYTLLKLNLVQGKT 269
+ L +L N V++++ +AP + H ++ +AQ + A +L L
Sbjct: 187 AQIKRLAGEVLHNHVLVQIGH--VAPADTVKHAFYPVAQHLKTALLLQLLGSTGTE--SV 242
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
++F T K +L L + S+ L L R A+ F G Y V++A+D A
Sbjct: 243 LVFTRTKYKAKQLGNKLTKAGFSSASLQGNLSQSRRVDAMNGFKSGKYQVLVATDIAA-- 300
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
RGID VS+VIN+D P + Y+HR GRT R K +G A
Sbjct: 301 ---------------------RGIDVANVSHVINYDMPSTPETYMHRIGRTGRAKRRGEA 339
Query: 390 LSFVS 394
+F++
Sbjct: 340 FTFIT 344
>gi|293373074|ref|ZP_06619442.1| DEAD/DEAH box helicase [Bacteroides ovatus SD CMC 3f]
gi|292631960|gb|EFF50570.1| DEAD/DEAH box helicase [Bacteroides ovatus SD CMC 3f]
Length = 422
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 117/372 (31%), Positives = 201/372 (54%), Gaps = 34/372 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+ + + E T IQE+AIP+IL+ KD++ A+TG+GKT AF +P++ K+ K
Sbjct: 13 LEALDAMRFDECTPIQEQAIPIILEGKDLIAVAQTGTGKTAAFLLPVLNKLSEGKHPEDA 72
Query: 90 QETKALVLSPSKELCNQLHKNIQELT--MKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
+++SP++EL Q+ + ++ + M S V ++ + Q+ L D+V
Sbjct: 73 --INCVIMSPTRELAQQIDQQMEGFSYFMPVS-SVAVYGGNDGILFEQQKKGLTLGADVV 129
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
+ATP R +AHL +DL S + I+DEAD + G+ +D+ + K+LPK Q I+ SA
Sbjct: 130 IATPGRLIAHLSLGYVDL-SKVSYFILDEADRMLDMGFYEDIMQIAKYLPKERQTIMFSA 188
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIA-PVSQLAHYHILAQEDEKATILYTLLKLNLVQ 266
T+ + L + IL NP +K PA++ P ++ + E++K I+ +L ++ V
Sbjct: 189 TMPAKIQQLANTILNNPSEIK---PAVSKPAEKIIQAAYVCYENQKLGIIRSLF-MDEVP 244
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
+ I+F ++ K ++ L+ K++ ++S+L R +++F G ++++A+D
Sbjct: 245 ERVIVFASSKIKVKEVAKALKSMKLNVGEMHSDLEQAQRETVMHEFKAGRINILVATDI- 303
Query: 327 ALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQ 386
V+RGID + VINFD P D + Y+HR GRTAR N
Sbjct: 304 ----------------------VARGIDIDDIRLVINFDVPHDSEDYVHRIGRTARANND 341
Query: 387 GTALSFVSLREQ 398
G AL+F+S +EQ
Sbjct: 342 GVALTFISEKEQ 353
>gi|403238270|ref|ZP_10916856.1| DEAD/DEAH box helicase domain-containing protein [Bacillus sp.
10403023]
Length = 496
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 111/373 (29%), Positives = 204/373 (54%), Gaps = 43/373 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
+++I+K+G+ E T IQ + IPL L+ DV+ +A+TG+GKT AF IP+I+ + +
Sbjct: 14 MKSISKMGFEEATPIQSQTIPLALEGHDVIGQAQTGTGKTAAFGIPLIENV-----DVKD 68
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ + +V++P++EL Q+ + + ++ +R V+ + I D+S Q L + P I+V
Sbjct: 69 ENIQGIVIAPTRELAIQVSEELHKIG-HFNR-VRILPIYGGQDISRQIRSLKKHPHIIVG 126
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + H+ KTL L+ +++ V++DEAD + + G+ +D++A+LK +P Q +L SAT+
Sbjct: 127 TPGRVIDHINRKTLKLQ-NVKTVVLDEADEMLNMGFIEDIEAILKGVPDERQTLLFSATM 185
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLL-----KLNL 264
+ + ++NP ++K++ + V + Y++ QE +K +L LL +L +
Sbjct: 186 PGPIQRIAERFMKNPKVVKVKTKEMT-VPNIQQYYLEVQEKKKFDVLTRLLDIQSPELAI 244
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
+ G+T V+ + + L+ Y + ++ +L R + +F +G +V++A+D
Sbjct: 245 IFGRTKRRVDELSEALTLRGYAAEG------IHGDLSQAKRISVLRKFKEGSIEVLVATD 298
Query: 325 EKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384
A RG+D V++V NFD P D + Y+HR GRT R
Sbjct: 299 VAA-----------------------RGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAG 335
Query: 385 NQGTALSFVSLRE 397
G A++FV+ RE
Sbjct: 336 KTGMAMTFVTPRE 348
>gi|302695203|ref|XP_003037280.1| hypothetical protein SCHCODRAFT_73122 [Schizophyllum commune H4-8]
gi|300110977|gb|EFJ02378.1| hypothetical protein SCHCODRAFT_73122 [Schizophyllum commune H4-8]
Length = 771
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 116/379 (30%), Positives = 197/379 (51%), Gaps = 36/379 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+ LG+ +PT IQ IP+ L KDV+ A TGSGKT AF IPM+++++ ++ +
Sbjct: 191 LKALTTLGFTKPTPIQAATIPVALLGKDVVGNAVTGSGKTAAFTIPMLERLLYREKGKKA 250
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T+ LVL P++EL Q ++ ++L D++ I + + QE L RPDIV+A
Sbjct: 251 AATRCLVLVPTRELAVQCYEVGKKLAAHT--DIEVALIVGGLSLKSQEATLRARPDIVIA 308
Query: 150 TPARALAHLKAK---TLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
TP R + H+ TLD +L+++++DEAD + S G+ D++ ++K PK Q +L S
Sbjct: 309 TPGRLIDHIHNSPSFTLD---NLDVLVLDEADRMLSDGFADELTEIIKACPKSRQTMLFS 365
Query: 207 ATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHI---LAQEDEKATILYTLLKLN 263
AT+++ V L + L PV L +P + L + +E E++ +L L
Sbjct: 366 ATMTDSVDELVRMSLDKPVRL-FVDPKRSTAKGLIQEFVRVRAGREKERSPLLVALCTRT 424
Query: 264 LVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIAS 323
+ + IIFV + ++L++ + L+ +L + R +A+ QF G D ++A+
Sbjct: 425 F-KTRVIIFVRSKKLAHQLRIVFGLVGLKCGELHGDLSQEQRLNALQQFRDGTVDYLMAT 483
Query: 324 DEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARG 383
D SRG+D + V VIN+D P + Y+HR GRTAR
Sbjct: 484 DL-----------------------ASRGLDIKGVETVINYDMPGQLAQYLHRVGRTARA 520
Query: 384 KNQGTALSFVSLREQDLMN 402
+G +++ V ++ ++
Sbjct: 521 GKKGRSVTLVGEGDRKMLK 539
>gi|134300131|ref|YP_001113627.1| DEAD/DEAH box helicase [Desulfotomaculum reducens MI-1]
gi|134052831|gb|ABO50802.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum reducens
MI-1]
Length = 482
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 111/371 (29%), Positives = 199/371 (53%), Gaps = 37/371 (9%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ 90
++I +G+ E T IQE+AIP+ L D++ +A TG+GKT AF IPM+++ + T Q
Sbjct: 15 ESIKLMGFEEATPIQEKAIPIALSGGDLIGQAHTGTGKTAAFGIPMVERFSRQQDTIQ-- 72
Query: 91 ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVAT 150
L+++P++EL Q+ + + + + + + + D++ Q L ++P I+V T
Sbjct: 73 ---GLIITPTRELAVQVAEEMNRIGQ--VKGIHTLPVYGGQDINRQIRALKKKPHIIVGT 127
Query: 151 PARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLS 210
P R + H+K KT+ L + L +V++DEAD + + G+ +D++ +L+ +P+ Q +L SAT+S
Sbjct: 128 PGRLMDHMKRKTIRL-NELTMVVLDEADEMLNMGFIEDIEEILQQVPEERQTLLFSATIS 186
Query: 211 EDVLSLKHLILRNP--VILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGK 268
+ + L L+NP + +K +E + + Q ++ QE +K +L T L +
Sbjct: 187 KPIQELARRFLKNPEFIAIKAKEVTVPSIDQ---SYVEVQEKQKFEVLSTFLDIQ-SPDL 242
Query: 269 TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL 328
I+F T + +L L + S ++ +L R + QF +G+ +V++A+D A
Sbjct: 243 AIVFGRTKRRVDELYEALSKRGYSAEGIHGDLTQSKRESVLRQFKEGIIEVLVATDVAA- 301
Query: 329 ETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGT 388
RG+D V++V NFD P D + Y+HR GRT R +G
Sbjct: 302 ----------------------RGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGE 339
Query: 389 ALSFVSLREQD 399
A++FV+ RE +
Sbjct: 340 AITFVTPREMN 350
>gi|359300107|ref|ZP_09185946.1| cold-shock DEAD box protein-A [Haemophilus [parainfluenzae] CCUG
13788]
Length = 606
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 117/389 (30%), Positives = 195/389 (50%), Gaps = 35/389 (8%)
Query: 18 ELPFTFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAI 74
E TF +P L A+ ++G++ P+ IQ+ IP +L+ +DVL A+TGSGKT AF++
Sbjct: 4 ESQITFADLGLPQSILDAVNQIGFVTPSPIQQETIPHLLEGRDVLGMAQTGSGKTAAFSL 63
Query: 75 PMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVS 134
P++ KI + + LV++P++EL Q+ ++ T K + V+ V +
Sbjct: 64 PLLSKI-----DPNARHPQMLVMAPTRELAIQVADACEQFT-KNMKGVRVVTVYGGQRYD 117
Query: 135 VQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLK 194
+Q L + +VV TP R L H++ TLDL S+L+ +++DEAD + G+ DD++ V+
Sbjct: 118 IQLRALKQGSQVVVGTPGRILDHIRRGTLDL-SALQSIVLDEADEMLRMGFIDDVETVMA 176
Query: 195 FLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKAT 254
LP+ +Q L SAT+ E + + ++NP +K++ + + + L K
Sbjct: 177 ELPEDHQTALFSATMPEPIRRITKRFMKNPQEVKIKATQRS-APDITQSYWLVNGFRKND 235
Query: 255 ILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQ 314
L L++ IIF T + E+ T LN ++ +AR + +
Sbjct: 236 ALLRFLEVEEFDA-AIIFTRTKTGTVDITELCERNGFRTAALNGDMTQQAREQTLDKLKS 294
Query: 315 GLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYI 374
G D+++A+D A RGID + +S V+N+D PLD + Y+
Sbjct: 295 GRLDILVATDVAA-----------------------RGIDIERISLVVNYDIPLDAESYV 331
Query: 375 HRAGRTARGKNQGTALSFVSLREQDLMND 403
HR GRT R G AL FV RE+ L+ +
Sbjct: 332 HRIGRTGRAGRSGRALLFVEPRERRLLRN 360
>gi|407712738|ref|YP_006833303.1| DEAD/DEAH box helicase [Burkholderia phenoliruptrix BR3459a]
gi|407234922|gb|AFT85121.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
phenoliruptrix BR3459a]
Length = 512
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 113/388 (29%), Positives = 199/388 (51%), Gaps = 34/388 (8%)
Query: 22 TFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQ 78
TF F + L+A+ + G+ PT IQ +AIP++L +DV+ A+TG+GKT +F++P+IQ
Sbjct: 38 TFDQFGLAPDILKAVKESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 97
Query: 79 KIINLKQTAQV---QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSV 135
+++ T+ +AL+L+P++EL +Q+ N+Q + ++ + VD++
Sbjct: 98 RLLPHASTSASPARHPVRALILTPTRELADQVAANVQSYAKHTA--LRSAVVFGGVDMNP 155
Query: 136 QEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKF 195
Q L +I++ATP R L H++ KT +L ++I+++DEAD + G+ D++ +L
Sbjct: 156 QSDQLRRGVEILIATPGRLLDHVQQKTANL-GQVQILVLDEADRMLDMGFLPDLQRILNL 214
Query: 196 LPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATI 255
LPK Q +L SAT S ++ L LRNP +++ + + +A+ D+ +
Sbjct: 215 LPKERQTLLFSATFSGEIKKLAATYLRNPQTIEVARSNSTATNVTQIVYEVAEGDKTGAV 274
Query: 256 LYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQG 315
+ + + NL Q I+F N+ +L LE+ + ++ + R A+ F +G
Sbjct: 275 VQLIRERNLKQ--VIVFCNSKIGASRLARSLERDGVVATAIHGDRSQNERMQALDAFKRG 332
Query: 316 LYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIH 375
+ ++A+D A RG+D + VINFD P + + Y+H
Sbjct: 333 EIEALVATDVAA-----------------------RGLDIAELPAVINFDLPFNAEDYVH 369
Query: 376 RAGRTARGKNQGTALSFVSLREQDLMND 403
R GRT R G ALS S E+ + D
Sbjct: 370 RIGRTGRAGASGDALSLFSPNEKKQLAD 397
>gi|16802907|ref|NP_464392.1| hypothetical protein lmo0866 [Listeria monocytogenes EGD-e]
gi|254827809|ref|ZP_05232496.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL N3-165]
gi|254911550|ref|ZP_05261562.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes J2818]
gi|254935876|ref|ZP_05267573.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes F6900]
gi|386043190|ref|YP_005961995.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes 10403S]
gi|386046528|ref|YP_005964860.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes J0161]
gi|386049793|ref|YP_005967784.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL R2-561]
gi|386053133|ref|YP_005970691.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes Finland
1998]
gi|16410269|emb|CAC98944.1| lmo0866 [Listeria monocytogenes EGD-e]
gi|258600190|gb|EEW13515.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL N3-165]
gi|258608464|gb|EEW21072.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes F6900]
gi|293589496|gb|EFF97830.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes J2818]
gi|345533519|gb|AEO02960.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes J0161]
gi|345536424|gb|AEO05864.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes 10403S]
gi|346423639|gb|AEO25164.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL R2-561]
gi|346645784|gb|AEO38409.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes Finland
1998]
gi|441470507|emb|CCQ20262.1| DEAD-box ATP-dependent RNA helicase CshA [Listeria monocytogenes]
gi|441473637|emb|CCQ23391.1| DEAD-box ATP-dependent RNA helicase CshA [Listeria monocytogenes
N53-1]
Length = 520
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 110/373 (29%), Positives = 200/373 (53%), Gaps = 43/373 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++++ ++G+ E T IQE+ IPL L+ KD++ +A+TG+GKT AF +PMI KI Q
Sbjct: 14 VKSVNRMGFEEATPIQEKTIPLGLEGKDLIGQAQTGTGKTAAFGLPMIHKIDQKSNNVQ- 72
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
AL+++P++EL Q+ + + +L+ + V+ + + D+S Q L + P IVV
Sbjct: 73 ----ALIIAPTRELAIQVSEELYKLS--YDKHVRVLAVYGGSDISRQIRSLKKNPQIVVG 126
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H+ +TL L +E +++DEAD + + G+ DD++ +LK +P Q +L SAT+
Sbjct: 127 TPGRILDHINRRTLKL-DHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLLFSATM 185
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLL-----KLNL 264
+ + + + +P +++++ + + + + + E EK +L LL +L +
Sbjct: 186 PDPIRRIGERFMHSPELIRIKAKEMTALL-IEQFFVKVHEKEKFDVLSRLLDVQAPELAI 244
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
V G+T V+ + + ++ Y+ + ++ +L R + +F +G DV++A+D
Sbjct: 245 VFGRTKRRVDELSRALDMRGYVAEG------IHGDLTQAKRMSVLRKFKEGKIDVLVATD 298
Query: 325 EKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384
A RG+D V++V N+D P D + Y+HR GRT R
Sbjct: 299 VAA-----------------------RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG 335
Query: 385 NQGTALSFVSLRE 397
+G A++FV RE
Sbjct: 336 KEGMAITFVQPRE 348
>gi|37521894|ref|NP_925271.1| ATP-dependent RNA helicase [Gloeobacter violaceus PCC 7421]
gi|35212893|dbj|BAC90266.1| gll2325 [Gloeobacter violaceus PCC 7421]
Length = 384
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 118/370 (31%), Positives = 189/370 (51%), Gaps = 32/370 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++A+ +LG+ +PT IQ AIP L +DVL A TGSGKT AF +P++Q++I ++
Sbjct: 13 VRAVEQLGFTQPTPIQTLAIPPALAGRDVLACAMTGSGKTAAFLLPILQQLIAQPRST-- 70
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T+ALVL+P++EL Q+ ++ +L + ++ I V Q + ++++
Sbjct: 71 --TRALVLTPTRELAGQIEMHLGQLARYSA--LRGASIIGGVSPEPQARAFHKGVEVLIG 126
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H L ++LEI+++DEAD + G+ D++ +L+ Q + SAT+
Sbjct: 127 TPGRLLDHFDQPYARL-ANLEILVLDEADRMLEMGFLPDIRRILRHTGHRRQTLFFSATM 185
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+ L ILRNPV L E A AP + H ++ K+ L LL+ ++ +
Sbjct: 186 PGPIAKLATEILRNPVTLNQERKA-APAVGITHSVYPVAQNLKSKFLLELLEREGMR-QV 243
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L YL + +IS ++ R A+ F G Y V++A+D
Sbjct: 244 IVFTRTKHRANRLSEYLSKARISCERIHGNRSQGQRTEALAGFKSGKYRVLVATDI---- 299
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRGID + + +V+NFD P + YIHR GRTAR + G A
Sbjct: 300 -------------------ASRGIDIEALGHVVNFDVPQAAEDYIHRVGRTARAERTGDA 340
Query: 390 LSFVSLREQD 399
+FVS E+D
Sbjct: 341 FTFVSPEEED 350
>gi|297800452|ref|XP_002868110.1| hypothetical protein ARALYDRAFT_493213 [Arabidopsis lyrata subsp.
lyrata]
gi|297313946|gb|EFH44369.1| hypothetical protein ARALYDRAFT_493213 [Arabidopsis lyrata subsp.
lyrata]
Length = 790
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 122/377 (32%), Positives = 194/377 (51%), Gaps = 34/377 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A LG+ +PT IQ IPL L +D+ A TGSGKT AFA+P ++++ L + +V
Sbjct: 182 LRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLERL--LFRPKRV 239
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T+ L+L+P++EL Q+H IQ+L D+KC I + V QE +L PDIVVA
Sbjct: 240 FATRVLILTPTRELAVQIHSMIQKLAQFT--DIKCGLIVGGLSVREQEVVLRSMPDIVVA 297
Query: 150 TPARALAHLK-AKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
TP R + HL+ + ++DL L ++I+DEAD + G+ ++ +++ PK Q +L SAT
Sbjct: 298 TPGRMIDHLRNSMSVDL-DDLAVLILDEADRLLQTGFATEITELVRLCPKRRQTMLFSAT 356
Query: 209 LSEDVLSLKHLILRNPVILKLEEPAIAP---VSQLAHYHILAQEDEKATILYTLLKLNLV 265
++E+V L L L P+ L + A P ++ + +++A +L L
Sbjct: 357 MTEEVKELVKLSLNKPLRLSADPSARRPPGLTEEVVRIRRTREANQEAVLLS--LCTRTF 414
Query: 266 QGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE 325
+ K IIF T ++LK+ + L+ L R ++ F + D +IA+D
Sbjct: 415 KSKVIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRKQEVDFLIATDV 474
Query: 326 KALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKN 385
A RG+D V VIN+ P +I Y+HR GRTAR
Sbjct: 475 AA-----------------------RGLDIIGVQTVINYACPREIDSYVHRVGRTARAGR 511
Query: 386 QGTALSFVSLREQDLMN 402
+G A++FV+ ++ L+
Sbjct: 512 EGYAVTFVTDSDRSLLK 528
>gi|222423183|dbj|BAH19569.1| AT4G16630 [Arabidopsis thaliana]
Length = 686
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 122/377 (32%), Positives = 193/377 (51%), Gaps = 34/377 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A LG+ +PT IQ IPL L +D+ A TGSGKT AFA+P ++++ L + +V
Sbjct: 179 LRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLERL--LFRPKRV 236
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T+ L+L+P++EL Q+H IQ L D+KC I + V QE +L PDIVVA
Sbjct: 237 FATRVLILTPTRELAVQIHSMIQNLAQFT--DIKCGLIVGGLSVREQEVVLRSMPDIVVA 294
Query: 150 TPARALAHLK-AKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
TP R + HL+ + ++DL L ++I+DEAD + G+ ++ +++ PK Q +L SAT
Sbjct: 295 TPGRMIDHLRNSMSVDL-DDLAVLILDEADRLLQTGFATEITELVRLCPKRRQTMLFSAT 353
Query: 209 LSEDVLSLKHLILRNPVILKLEEPAIAP---VSQLAHYHILAQEDEKATILYTLLKLNLV 265
++E+V L L L P+ L + A P ++ + +++A +L L
Sbjct: 354 MTEEVKELVKLSLNKPLRLSADPSARRPPGLTEEVVRIRRTREANQEAVLLS--LCTRTF 411
Query: 266 QGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE 325
+ K IIF T ++LK+ + L+ L R ++ F + D +IA+D
Sbjct: 412 KSKVIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRKQEVDFLIATDV 471
Query: 326 KALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKN 385
A RG+D V VIN+ P +I Y+HR GRTAR
Sbjct: 472 AA-----------------------RGLDIIGVQTVINYACPREIDSYVHRVGRTARAGR 508
Query: 386 QGTALSFVSLREQDLMN 402
+G A++FV+ ++ L+
Sbjct: 509 EGYAVTFVTDSDRSLLK 525
>gi|47094873|ref|ZP_00232487.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes str. 1/2a
F6854]
gi|284801196|ref|YP_003413061.1| hypothetical protein LM5578_0946 [Listeria monocytogenes 08-5578]
gi|284994338|ref|YP_003416106.1| hypothetical protein LM5923_0900 [Listeria monocytogenes 08-5923]
gi|404283308|ref|YP_006684205.1| ATP-dependent RNA helicase [Listeria monocytogenes SLCC2372]
gi|404410105|ref|YP_006695693.1| ATP-dependent RNA helicase [Listeria monocytogenes SLCC5850]
gi|404412950|ref|YP_006698537.1| ATP-dependent RNA helicase [Listeria monocytogenes SLCC7179]
gi|405757863|ref|YP_006687139.1| ATP-dependent RNA helicase [Listeria monocytogenes SLCC2479]
gi|47016755|gb|EAL07674.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes str. 1/2a
F6854]
gi|284056758|gb|ADB67699.1| hypothetical protein LM5578_0946 [Listeria monocytogenes 08-5578]
gi|284059805|gb|ADB70744.1| hypothetical protein LM5923_0900 [Listeria monocytogenes 08-5923]
gi|404229931|emb|CBY51335.1| ATP-dependent RNA helicase [Listeria monocytogenes SLCC5850]
gi|404232810|emb|CBY54213.1| ATP-dependent RNA helicase [Listeria monocytogenes SLCC2372]
gi|404235745|emb|CBY57147.1| ATP-dependent RNA helicase [Listeria monocytogenes SLCC2479]
gi|404238649|emb|CBY60050.1| ATP-dependent RNA helicase [Listeria monocytogenes SLCC7179]
Length = 522
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 110/373 (29%), Positives = 200/373 (53%), Gaps = 43/373 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++++ ++G+ E T IQE+ IPL L+ KD++ +A+TG+GKT AF +PMI KI Q
Sbjct: 16 VKSVNRMGFEEATPIQEKTIPLGLEGKDLIGQAQTGTGKTAAFGLPMIHKIDQKSNNVQ- 74
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
AL+++P++EL Q+ + + +L+ + V+ + + D+S Q L + P IVV
Sbjct: 75 ----ALIIAPTRELAIQVSEELYKLS--YDKHVRVLAVYGGSDISRQIRSLKKNPQIVVG 128
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H+ +TL L +E +++DEAD + + G+ DD++ +LK +P Q +L SAT+
Sbjct: 129 TPGRILDHINRRTLKL-DHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLLFSATM 187
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLL-----KLNL 264
+ + + + +P +++++ + + + + + E EK +L LL +L +
Sbjct: 188 PDPIRRIGERFMHSPELIRIKAKEMTALL-IEQFFVKVHEKEKFDVLSRLLDVQAPELAI 246
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
V G+T V+ + + ++ Y+ + ++ +L R + +F +G DV++A+D
Sbjct: 247 VFGRTKRRVDELSRALDMRGYVAEG------IHGDLTQAKRMSVLRKFKEGKIDVLVATD 300
Query: 325 EKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384
A RG+D V++V N+D P D + Y+HR GRT R
Sbjct: 301 VAA-----------------------RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG 337
Query: 385 NQGTALSFVSLRE 397
+G A++FV RE
Sbjct: 338 KEGMAITFVQPRE 350
>gi|56477513|ref|YP_159102.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
gi|56313556|emb|CAI08201.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
Length = 508
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 117/371 (31%), Positives = 195/371 (52%), Gaps = 31/371 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQT-AQ 88
L+AI++ G+ PT IQ +AIPL+L D+L A+TG+GKT F +P++ ++ +
Sbjct: 17 LRAISESGYTTPTPIQAQAIPLVLAGGDLLAAAQTGTGKTAGFTLPVLHRLSAAPAANPK 76
Query: 89 VQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
+ L+L+P++EL Q+ ++++ T + + V ++ Q L +R DI+V
Sbjct: 77 AGRPRCLILTPTRELAAQVEESVR--TYGKHLPTTSMVMFGGVGINPQIQALKKRVDILV 134
Query: 149 ATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
ATP R L H+ KTLDL S +EI+I+DEAD + G+ D++ +L LPK Q +L SAT
Sbjct: 135 ATPGRLLDHVGQKTLDL-SGVEILILDEADRMLDMGFIRDIRKILALLPKQRQNLLFSAT 193
Query: 209 LSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILA-QEDEKATILYTLLKLNLVQG 267
S+++ SL + +L NP +++ A S+L + + + +K +L L+K N
Sbjct: 194 FSDEIRSLANGLLHNPGCVEVARRNTA--SELVQQSVYSVAQKQKRDLLVHLVKQNDWH- 250
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
+ ++F T KL YL + I + ++ AR A+ +F G V++A+D A
Sbjct: 251 QVLVFTRTKHGANKLAEYLAKHGIPSAAIHGNKSQSARTRALAEFKDGSLPVLVATDIAA 310
Query: 328 LETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQG 387
RG+D + +V+NF+ P + Y+HR GRT R + G
Sbjct: 311 -----------------------RGLDIDQLPHVVNFELPNVPEDYVHRIGRTGRAGSSG 347
Query: 388 TALSFVSLREQ 398
A+SFV E+
Sbjct: 348 AAVSFVDSEER 358
>gi|357008100|ref|ZP_09073099.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
elgii B69]
Length = 529
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 121/385 (31%), Positives = 207/385 (53%), Gaps = 38/385 (9%)
Query: 22 TFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQ 78
TF+ F + L+AI ++G+ E T IQE+AIP+ ++ +D++ +A+TG+GKT AF IP+I
Sbjct: 3 TFSEFGLEPKVLRAITEMGFEESTPIQEKAIPIAMEGRDLIGQAQTGTGKTAAFGIPLIN 62
Query: 79 KIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEP 138
K I++K+ V AL++ P++EL Q+ + I++L + ++ + I D+ Q
Sbjct: 63 K-IDIKEERIV----ALIMCPTRELAIQVAEEIEKLGR--FKGIRSLPIYGGQDIVKQIR 115
Query: 139 LLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPK 198
L ++P I++ TP R L H+ KT+ L ++ VI+DEAD + G+ +D++++LK +P
Sbjct: 116 ALRKKPQIIIGTPGRLLDHINRKTIKL-DDVQTVILDEADEMLDMGFMEDIQSILKLVPD 174
Query: 199 LYQAILASATLSEDVLSLKHLILRNPV-ILKLEEPAIAPVSQLAHYHILAQEDEKATILY 257
Q +L SAT+ ++ L L NP + + + AP+ + +I E +K L
Sbjct: 175 ERQTMLFSATMPINIQKLAQQFLSNPEHVSVIPKQVSAPL--IDQSYIELHERQKFEALC 232
Query: 258 TLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLY 317
L+ + IIF T + +L L++ + L+ +L R + + +F G
Sbjct: 233 RLIDME-APDLAIIFGRTKRRVDELSEALQKRGYTAEGLHGDLSQNQRDNVMRKFRDGSI 291
Query: 318 DVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRA 377
DV++A+D A RG+D V++VINFD P D + Y+HR
Sbjct: 292 DVLVATDVAA-----------------------RGLDVSGVTHVINFDLPQDPESYVHRI 328
Query: 378 GRTARGKNQGTALSFVSLREQDLMN 402
GRT R +G A +FV+ RE D ++
Sbjct: 329 GRTGRAGKEGAAYTFVTPREIDHLH 353
>gi|160888241|ref|ZP_02069244.1| hypothetical protein BACUNI_00650 [Bacteroides uniformis ATCC 8492]
gi|156862187|gb|EDO55618.1| DEAD/DEAH box helicase [Bacteroides uniformis ATCC 8492]
Length = 428
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 118/372 (31%), Positives = 200/372 (53%), Gaps = 34/372 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+ + + E T IQE++IP+IL+ +D++ A+TG+GKT A+ +P++ K+ A
Sbjct: 13 LEALDAMRFEECTPIQEQSIPVILEGRDLIAVAQTGTGKTAAYLLPILNKLSEGGHPADA 72
Query: 90 QETKALVLSPSKELCNQLHKNIQELT--MKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
+V++P++EL Q+ + ++ + M S V ++ V Q+ L D+V
Sbjct: 73 --INCIVMAPTRELAQQIDQQMEGFSYFMPVS-SVAVYGGNDGVLFEQQKRGLTLGADVV 129
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
+ATP R +AHL +DL S + I+DEAD + G+ DD+ ++KFLPK Q I+ SA
Sbjct: 130 IATPGRLIAHLSLGYVDL-SRVSYFILDEADRMLDMGFYDDIMQIVKFLPKERQTIMFSA 188
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIA-PVSQLAHYHILAQEDEKATILYTLLKLNLVQ 266
T+ + L IL NP +KL A++ P ++ + E++K I+ +L +
Sbjct: 189 TMPAKIQQLAGNILNNPAEVKL---AVSKPAEKIVQAAYVCYENQKLGIIRSLFAEETPE 245
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
+ IIF ++ K ++ L+Q K++ ++S+L R +Y+F G ++++A+D
Sbjct: 246 -RVIIFASSKLKVKEVTKALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRINILVATDI- 303
Query: 327 ALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQ 386
V+RGID + VIN+D P D + Y+HR GRTAR N
Sbjct: 304 ----------------------VARGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANND 341
Query: 387 GTALSFVSLREQ 398
G A++FVS +EQ
Sbjct: 342 GVAITFVSEKEQ 353
>gi|399048154|ref|ZP_10739853.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. CF112]
gi|398053887|gb|EJL46038.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. CF112]
Length = 503
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 110/379 (29%), Positives = 200/379 (52%), Gaps = 33/379 (8%)
Query: 21 FTFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKI 80
+ F L ++A+ +G+ E T IQE+ +P+ LQ +D++ +A+TG+GKT AF IP+++++
Sbjct: 5 YDFGLHHSVVRALGNMGFEEATAIQEQTVPVALQGRDLIGQAQTGTGKTAAFGIPLVERL 64
Query: 81 INLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLL 140
Q +VL+P++EL Q+ + I ++ +++ + I D++ Q L
Sbjct: 65 DENNGNIQ-----GVVLTPTRELAVQVAEEINKIAQ--FKNISALPIYGGQDITRQIKAL 117
Query: 141 VERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLY 200
+RP I+VATP R + H++ +T+ L ++EIV++DEAD + + G+ DD+K +L+ +P
Sbjct: 118 KKRPQIIVATPGRFMDHMRRRTIRL-DAIEIVVLDEADEMLNMGFIDDIKEILQEVPDNR 176
Query: 201 QAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLL 260
Q +L SAT+ + + + P ++ + +P V + ++ E +K +L LL
Sbjct: 177 QTLLFSATMPRAIQEIAQQFMTEPALISV-KPKEVTVPNIEQQYMEVAEKQKFDVLCRLL 235
Query: 261 KLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVI 320
++ + IIF T + +L L + ++ +L R + +F +G +V+
Sbjct: 236 DIHSPE-LAIIFGRTKRRVDELSEALTKRGYGAEGIHGDLNQAKRDSVLRKFKEGTIEVL 294
Query: 321 IASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRT 380
+A+D A RG+D V++V NFD P D + Y+HR GRT
Sbjct: 295 VATDVAA-----------------------RGLDISGVTHVFNFDIPQDSESYVHRIGRT 331
Query: 381 ARGKNQGTALSFVSLREQD 399
R G A++FV+ RE D
Sbjct: 332 GRAGKTGLAITFVTSREID 350
>gi|296332826|ref|ZP_06875286.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305673172|ref|YP_003864844.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296150106|gb|EFG90995.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305411416|gb|ADM36535.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
spizizenii str. W23]
gi|407956155|dbj|BAM49395.1| ATP-dependent RNA helicase [Bacillus subtilis BEST7613]
gi|407963426|dbj|BAM56665.1| ATP-dependent RNA helicase [Bacillus subtilis BEST7003]
Length = 494
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 117/403 (29%), Positives = 212/403 (52%), Gaps = 46/403 (11%)
Query: 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIIN 82
F L ++AI ++G+ E T IQ + IPL L NKDV+ +A+TG+GKT AF IP+++KI
Sbjct: 8 FNLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLVEKI-- 65
Query: 83 LKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVE 142
+ +A+V++P++EL Q+ + + ++ + K + I D+ Q L +
Sbjct: 66 ---NPESPNIQAIVIAPTRELAIQVSEELYKIGQ--DKRAKVLPIYGGQDIGRQIRALKK 120
Query: 143 RPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQA 202
P I+V TP R L H+ +T+ L +++ V++DEAD + + G+ DD++++L +P +Q
Sbjct: 121 NPHIIVGTPGRLLDHINRRTIRL-NNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQT 179
Query: 203 ILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLL-- 260
+L SAT+ + + + P +K++ + VS + +++ QE +K L LL
Sbjct: 180 LLFSATMPAPIKRIAERFMTEPEHVKVKAKEMT-VSNIQQFYLEVQERKKFDTLTRLLDI 238
Query: 261 ---KLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLY 317
+L +V G+T V+ + + L+ Y + ++ +L R A+ +F +G
Sbjct: 239 QSPELAIVFGRTKRRVDELAEALNLRGYAAEG------IHGDLTQAKRMVALRKFKEGAI 292
Query: 318 DVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRA 377
+V++A+D A RG+D V++V NFD P D + Y+HR
Sbjct: 293 EVLVATDVAA-----------------------RGLDISGVTHVYNFDVPQDPESYVHRI 329
Query: 378 GRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMND 420
GRT R G A++F++ RE+ ++ A+ + R+ D M +
Sbjct: 330 GRTGRAGKTGMAMTFITPREKSMLR---AIEQTTKRKMDRMKE 369
>gi|384084915|ref|ZP_09996090.1| DEAD/DEAH box helicase domain-containing protein [Acidithiobacillus
thiooxidans ATCC 19377]
Length = 420
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 114/375 (30%), Positives = 199/375 (53%), Gaps = 30/375 (8%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTA--Q 88
+A A+ G+ PT IQE+AIP+++ D+L A+TG+GKT AFA+P++ K+ +TA
Sbjct: 16 RAAAERGYTTPTPIQEQAIPVVMSGVDLLAGAQTGTGKTAAFAMPILHKLAATSETAFHG 75
Query: 89 VQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
+ALVL P++EL Q+ +++Q S ++ + + V ++ Q L D++V
Sbjct: 76 PSSVRALVLVPTRELAAQVEESVQLYGKNLS--LRSLILIGGVKINPQMQKLRRSVDVLV 133
Query: 149 ATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
ATP R L H++ +++DL S +EI+++DEAD + G+ D++ +L LPK Q +L SAT
Sbjct: 134 ATPGRLLDHIQQRSVDL-SHVEILVLDEADRMLDMGFIRDIRRILAVLPKKRQNLLFSAT 192
Query: 209 LSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGK 268
S ++ +L +L NPV +++ A ++ + +D K +L L+ +
Sbjct: 193 FSPEIRTLADGLLNNPVSVEVASRN-ATADTVSQRFLAVDQDRKRELLTHLIGEQQWH-Q 250
Query: 269 TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL 328
++F T +L +L Q + ++ + AR A+ +F +G V++A+D A
Sbjct: 251 VLVFTRTKHGADRLAKHLSQGGMQAMAIHGDKSQGARTRALAEFKEGKVRVLVATDIAA- 309
Query: 329 ETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGT 388
RGID + +V+N++ P + Y+HR GRT R N G
Sbjct: 310 ----------------------RGIDINELPHVVNYELPHVPEDYVHRIGRTGRAGNNGQ 347
Query: 389 ALSFVSLREQDLMND 403
A+S VS+ E+ ++D
Sbjct: 348 AVSLVSVDERKQLSD 362
>gi|409201973|ref|ZP_11230176.1| ATP-dependent RNA helicase, cold shock protein A [Pseudoalteromonas
flavipulchra JG1]
Length = 607
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 124/387 (32%), Positives = 206/387 (53%), Gaps = 36/387 (9%)
Query: 20 PFTF-TLFCIP--LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPM 76
P TF +L P L+A+ +LG+ P+ IQ + IPL+L+ KDVL A+TG+GKT AFA+P+
Sbjct: 4 PVTFESLDLSPAILKAVEELGYKTPSEIQAQCIPLLLERKDVLGLAQTGTGKTAAFALPL 63
Query: 77 IQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQ 136
+ ++ A V++ + LVL+P++EL Q+ + Q+ K ++ V+ + + +Q
Sbjct: 64 LNQV-----DASVKQPQILVLTPTRELAIQVAEAFQQYA-KYTKGVEVLALYGGQSYGIQ 117
Query: 137 EPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFL 196
L I+VATP R + H+ KT+DL S L +++DEAD + G+ DD++++++
Sbjct: 118 LSALRRGAQIIVATPGRLIDHINRKTIDL-SGLNALVLDEADEMLRMGFIDDVESIMEKT 176
Query: 197 PKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATIL 256
P+ Q L SAT+ + + S+ + L N +K+ P + VS + + A + I+
Sbjct: 177 PEEKQTCLFSATMPKQIQSICNKYLDNAEQVKI-TPRNSTVSTIEQVYWRATAHKNKAIV 235
Query: 257 YTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGL 316
L+ G I+FV T + +L LE+ S LN ++ +AR V + GL
Sbjct: 236 R-FLEAEDYDG-AIVFVRTRNDTVQLAELLEREGFSAAPLNGDMNQQARERTVDRLKSGL 293
Query: 317 YDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHR 376
D++IA+D A RG+D + +S V+N+D P D + Y+HR
Sbjct: 294 LDIVIATDVAA-----------------------RGLDVERLSLVVNYDIPQDCEAYVHR 330
Query: 377 AGRTARGKNQGTALSFVSLREQDLMND 403
GRT R QG A+ FV E+ L+ +
Sbjct: 331 IGRTGRAGRQGKAILFVKNNERYLLKN 357
>gi|30683736|ref|NP_193396.3| DEAD-box ATP-dependent RNA helicase 28 [Arabidopsis thaliana]
gi|75338927|sp|Q9ZRZ8.1|RH28_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 28
gi|3776027|emb|CAA09214.1| RNA helicase [Arabidopsis thaliana]
gi|110736657|dbj|BAF00292.1| RNA helicase like protein [Arabidopsis thaliana]
gi|332658378|gb|AEE83778.1| DEAD-box ATP-dependent RNA helicase 28 [Arabidopsis thaliana]
Length = 789
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 122/377 (32%), Positives = 193/377 (51%), Gaps = 34/377 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A LG+ +PT IQ IPL L +D+ A TGSGKT AFA+P ++++ L + +V
Sbjct: 179 LRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLERL--LFRPKRV 236
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T+ L+L+P++EL Q+H IQ L D+KC I + V QE +L PDIVVA
Sbjct: 237 FATRVLILTPTRELAVQIHSMIQNLAQFT--DIKCGLIVGGLSVREQEVVLRSMPDIVVA 294
Query: 150 TPARALAHLK-AKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
TP R + HL+ + ++DL L ++I+DEAD + G+ ++ +++ PK Q +L SAT
Sbjct: 295 TPGRMIDHLRNSMSVDL-DDLAVLILDEADRLLQTGFATEITELVRLCPKRRQTMLFSAT 353
Query: 209 LSEDVLSLKHLILRNPVILKLEEPAIAP---VSQLAHYHILAQEDEKATILYTLLKLNLV 265
++E+V L L L P+ L + A P ++ + +++A +L L
Sbjct: 354 MTEEVKELVKLSLNKPLRLSADPSARRPPGLTEEVVRIRRTREANQEAVLLS--LCTRTF 411
Query: 266 QGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE 325
+ K IIF T ++LK+ + L+ L R ++ F + D +IA+D
Sbjct: 412 KSKVIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRKQEVDFLIATDV 471
Query: 326 KALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKN 385
A RG+D V VIN+ P +I Y+HR GRTAR
Sbjct: 472 AA-----------------------RGLDIIGVQTVINYACPREIDSYVHRVGRTARAGR 508
Query: 386 QGTALSFVSLREQDLMN 402
+G A++FV+ ++ L+
Sbjct: 509 EGYAVTFVTDSDRSLLK 525
>gi|378823723|ref|ZP_09846322.1| putative ATP-dependent RNA helicase RhlE [Sutterella parvirubra YIT
11816]
gi|378597462|gb|EHY30751.1| putative ATP-dependent RNA helicase RhlE [Sutterella parvirubra YIT
11816]
Length = 639
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 115/372 (30%), Positives = 198/372 (53%), Gaps = 41/372 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII---NLKQT 86
L AIA++G+ EPT IQ +AIP++L+ DV+ A+TG+GKT F +P++ +I+ N +
Sbjct: 14 LSAIARMGYSEPTPIQTQAIPVVLKGGDVMGAAQTGTGKTAGFGLPLLARILPKANTSMS 73
Query: 87 AQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDI 146
+AL+L+P++EL +Q+ N+ V V VD+ Q +L ++
Sbjct: 74 PARHPVRALILTPTRELADQVSDNLTAYAADTPLRVGVV--YGGVDIRPQADMLRRGIEV 131
Query: 147 VVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
+ ATP R L H+ K+++L S +EIV++DEAD + G+ D+ +L+ LPK Q+++ S
Sbjct: 132 LTATPGRLLDHVAQKSVNL-SQVEIVVLDEADRMLDMGFLPDISRILQLLPKTRQSLMFS 190
Query: 207 ATLSEDVLSL-KHLILRNPVILKL--EEPAIAPVSQLAHYHILA-QEDEKATILYTLLKL 262
AT SE++ L K+ + +P ++K+ + A V+Q +LA E +K +L +L+
Sbjct: 191 ATFSEEITKLAKNFLKPDPAVIKVARQNQTAATVTQ----ELLAVTERDKTDVLIDMLRT 246
Query: 263 NLVQG----KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYD 318
+G + ++FVN C +L LE+ I+ ++ + + R A+ F G
Sbjct: 247 RGPEGGPLTQVLVFVNAKITCRRLARTLERVGINADAIHGDKTQEERQVALDGFKSGAIH 306
Query: 319 VIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAG 378
V++A+D A RG+D + + VIN+D P + Y+HR G
Sbjct: 307 VLVATDVAA-----------------------RGLDIKELPFVINYDVPYSAEDYVHRIG 343
Query: 379 RTARGKNQGTAL 390
RT R ++G A+
Sbjct: 344 RTGRAGSKGVAV 355
>gi|152999406|ref|YP_001365087.1| DEAD/DEAH box helicase [Shewanella baltica OS185]
gi|151364024|gb|ABS07024.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
Length = 525
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 119/386 (30%), Positives = 197/386 (51%), Gaps = 30/386 (7%)
Query: 19 LPFTFTLFCIP-LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMI 77
+ FT P L+A+A+ G+ P+ IQ +AIP +LQ KDV+ A+TG+GKT F +PM+
Sbjct: 12 MSFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPML 71
Query: 78 QKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQE 137
+ +++ AQ + +ALVL+P++EL Q+ ++++ T + ++ I V ++ Q
Sbjct: 72 E-LLSKGNRAQAGQVRALVLTPTRELAAQVAESVE--TYGKNLPLRSAVIFGGVPINPQI 128
Query: 138 PLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLP 197
L D++VATP R + K + S LEI+++DEAD + G+ D++ +L LP
Sbjct: 129 AKLRHGVDVLVATPGRLMDLYNQKAVKF-SQLEILVLDEADRMLDMGFIRDIRKILAILP 187
Query: 198 KLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILY 257
K Q ++ SAT S+++ L ++ NPV + + P A + + + + +K+ +L
Sbjct: 188 KQRQNLMFSATFSDEIRELAKGLVNNPVEISV-TPRNAAATTVKQWVCPVDKSQKSALLI 246
Query: 258 TLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLY 317
L+K N Q + ++F T +L LE I ++ AR A+ F G
Sbjct: 247 QLIKQNDWQ-QVLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQA 305
Query: 318 DVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRA 377
V++A+D A RG+D + V+NFD P + Y+HR
Sbjct: 306 RVLVATDIAA-----------------------RGLDIDQLPQVVNFDLPNVPEDYVHRI 342
Query: 378 GRTARGKNQGTALSFVSLREQDLMND 403
GRT R G A+S VS E L+ND
Sbjct: 343 GRTGRAGASGQAVSLVSNEEIKLLND 368
>gi|402488920|ref|ZP_10835725.1| DEAD/DEAH box helicase [Rhizobium sp. CCGE 510]
gi|401812104|gb|EJT04461.1| DEAD/DEAH box helicase [Rhizobium sp. CCGE 510]
Length = 553
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 117/384 (30%), Positives = 195/384 (50%), Gaps = 35/384 (9%)
Query: 20 PFTFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQK 79
P TLF +LG PT IQE AIPL+L+ +D++ A+TG+GKT AF +P+I+K
Sbjct: 12 PIVATLF--------QLGIETPTPIQEHAIPLLLEGRDLIGLAQTGTGKTAAFGLPLIEK 63
Query: 80 IINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL 139
++ ++ + T+ L+L+P++EL NQ+ +++++ K + V V ++ Q+
Sbjct: 64 LLADERRPDNRTTRTLILAPTRELVNQIAESLKKFIRKSHLRINVV--VGGVSINKQQLQ 121
Query: 140 LVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199
L + DI+VATP R L + + + L +++ +++DEAD + G+ D++ + K +PK
Sbjct: 122 LEKGTDILVATPGRLLDLINRRAISL-TTVRYLVLDEADQMLDLGFVHDLRKIAKMVPKK 180
Query: 200 YQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTL 259
Q +L SAT+ + + L L +PV +++ P A + H +A +++K +L
Sbjct: 181 RQTMLFSATMPKAIADLAGDYLVDPVKVEVTPPGKAADKVEQYVHFVAGKNDKTELLRKS 240
Query: 260 LKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDV 319
L N G+ I+F+ T KL +LE S ++ R A+ F G
Sbjct: 241 LTEN-PDGRAIVFLRTKHGAEKLMKHLENIGYSVASIHGNKSQGQRERALKAFRDGSIKT 299
Query: 320 IIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGR 379
+IA+D A RGID VS+V N+D P Y+HR GR
Sbjct: 300 LIATDVAA-----------------------RGIDIPAVSHVYNYDLPEVPDAYVHRIGR 336
Query: 380 TARGKNQGTALSFVSLREQDLMND 403
TAR G A++F + E L+ D
Sbjct: 337 TARAGRDGIAIAFCAPDEAKLLRD 360
>gi|152974078|ref|YP_001373595.1| DEAD/DEAH box helicase [Bacillus cytotoxicus NVH 391-98]
gi|152022830|gb|ABS20600.1| DEAD/DEAH box helicase domain protein [Bacillus cytotoxicus NVH
391-98]
Length = 511
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 112/373 (30%), Positives = 201/373 (53%), Gaps = 43/373 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQ++ K+G+ E T IQ IP LQ KD++ +A+TG+GKT AF +P+++K+ K+ Q
Sbjct: 26 LQSVEKMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLEKVDTNKEMVQ- 84
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+V++P++EL Q+ + + ++ + V+ + I D++ Q L +RP I+V
Sbjct: 85 ----GIVIAPTRELAIQVGEELYKIGQ--HKRVRILPIYGGQDINRQIRALKKRPHIIVG 138
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H+ KTL L+ ++E V++DEAD + + G+ +D++A+L +P+ +Q +L SAT+
Sbjct: 139 TPGRILDHINRKTLRLQ-NVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATM 197
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLL-----KLNL 264
E + + + P +K++ + + + +++ QE +K +L LL +L +
Sbjct: 198 PEPIRRIAERFMTEPQHIKVKAKEVT-MPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAI 256
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
V G+T V+ + + L+ Y + ++ +L R + +F +G +V++A+D
Sbjct: 257 VFGRTKRRVDELSEALNLRGYAAEG------IHGDLTQAKRMSVLRKFKEGSIEVLVATD 310
Query: 325 EKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384
A RG+D V++V NFD P D + Y+HR GRT R
Sbjct: 311 VAA-----------------------RGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAG 347
Query: 385 NQGTALSFVSLRE 397
G A+ FV+ RE
Sbjct: 348 KTGLAMLFVTPRE 360
>gi|199598808|ref|ZP_03212220.1| Superfamily II DNA and RNA helicase [Lactobacillus rhamnosus HN001]
gi|229551599|ref|ZP_04440324.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus rhamnosus
LMS2-1]
gi|258509533|ref|YP_003172284.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus GG]
gi|258540734|ref|YP_003175233.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus Lc 705]
gi|385829155|ref|YP_005866927.1| RNA helicase [Lactobacillus rhamnosus GG]
gi|385836364|ref|YP_005874139.1| DEAD/DEAH box helicase [Lactobacillus rhamnosus ATCC 8530]
gi|418071067|ref|ZP_12708341.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus R0011]
gi|421770133|ref|ZP_16206834.1| Cold-shock DEAD-box protein A [Lactobacillus rhamnosus LRHMDP2]
gi|421772789|ref|ZP_16209442.1| Cold-shock DEAD-box protein A [Lactobacillus rhamnosus LRHMDP3]
gi|423078246|ref|ZP_17066931.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus rhamnosus
ATCC 21052]
gi|199590313|gb|EDY98407.1| Superfamily II DNA and RNA helicase [Lactobacillus rhamnosus HN001]
gi|229315064|gb|EEN81037.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus rhamnosus
LMS2-1]
gi|257149460|emb|CAR88433.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus GG]
gi|257152410|emb|CAR91382.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus Lc 705]
gi|259650800|dbj|BAI42962.1| RNA helicase [Lactobacillus rhamnosus GG]
gi|355395856|gb|AER65286.1| DEAD/DEAH box helicase family protein [Lactobacillus rhamnosus ATCC
8530]
gi|357538561|gb|EHJ22581.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus R0011]
gi|357551850|gb|EHJ33633.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus rhamnosus
ATCC 21052]
gi|411182661|gb|EKS49806.1| Cold-shock DEAD-box protein A [Lactobacillus rhamnosus LRHMDP2]
gi|411183203|gb|EKS50343.1| Cold-shock DEAD-box protein A [Lactobacillus rhamnosus LRHMDP3]
Length = 502
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 116/375 (30%), Positives = 196/375 (52%), Gaps = 47/375 (12%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AIA+ G+ E T IQ IPL+L+ KDV+ +A+TG+GKT AF +P++Q I ++ Q
Sbjct: 13 LKAIAQSGFEEATPIQAETIPLVLEGKDVIGQAQTGTGKTAAFGLPILQHIDKADRSIQ- 71
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRD--VKCVDISEQVDVSVQEPLLVERPDIV 147
ALV+SP++EL Q QE + RD +K + D+ Q L + P IV
Sbjct: 72 ----ALVISPTRELAIQ----TQEELYRLGRDKKIKVQAVYGGADIRRQIRQLADHPQIV 123
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
V TP R L H+ TL L+ L+ +++DEAD + G+ DD++ +++ +P Q +L SA
Sbjct: 124 VGTPGRILDHIGRHTLKLE-HLDTLVLDEADEMLDMGFIDDIEKIVEQMPTERQTLLFSA 182
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLL-----KL 262
T+ ++ L + ++ PVI+K++ + + Y++ A++ EK ++ L L
Sbjct: 183 TMPAAIMRLTNKFMKEPVIVKIKAKELT-ADTVEQYYVRAKDYEKFDVMTRLFDVQDPDL 241
Query: 263 NLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIA 322
L+ G+T V+ + + K + Y + ++ +L + R + QF G D ++A
Sbjct: 242 ALIFGRTKRRVDELTRGLKARGYRAEG------IHGDLTQQKRMSVLRQFKSGQLDFLVA 295
Query: 323 SDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTAR 382
+D A RG+D V++V N+D P D Y+HR GRT R
Sbjct: 296 TDVAA-----------------------RGLDISGVTHVYNYDIPQDPDSYVHRIGRTGR 332
Query: 383 GKNQGTALSFVSLRE 397
++G +++FV+ E
Sbjct: 333 AGHKGVSVTFVTPNE 347
>gi|452974255|gb|EME74076.1| DEAD/DEAH box helicase [Bacillus sonorensis L12]
Length = 487
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 116/401 (28%), Positives = 212/401 (52%), Gaps = 46/401 (11%)
Query: 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIIN 82
F L +AI ++G+ E T IQ + IPL L NKDV+ +A+TG+GKT AF IP+++KI
Sbjct: 8 FQLSSDLTKAIKRMGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIPLVEKI-- 65
Query: 83 LKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVE 142
+ +A+V++P++EL Q+ + + ++ + + + I D+ Q L +
Sbjct: 66 ---DPESPNIQAIVIAPTRELAIQVSEELYKIGQ--DKRARVLPIYGGQDIGRQIRALKK 120
Query: 143 RPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQA 202
P I+V TP R + H+ +T+ L+ ++ V++DEAD + + G+ +D++++L +P+ +Q
Sbjct: 121 NPHIIVGTPGRLIDHINRRTMRLQ-TVNTVVLDEADEMLNMGFIEDIESILSNVPEDHQT 179
Query: 203 ILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLL-- 260
+L SAT+ + + + NP +K++ + VS + +++ E +K L LL
Sbjct: 180 LLFSATMPAPIKRIAERFMNNPEHIKVKAKEMT-VSNIQQFYLEVHERKKFDTLTRLLDI 238
Query: 261 ---KLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLY 317
+L +V G+T V+ + + L+ Y + ++ +L R A+ +F QG
Sbjct: 239 QSPELAIVFGRTKRRVDELTEALNLRGYTAEG------IHGDLTQAKRMVALRKFKQGAI 292
Query: 318 DVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRA 377
+V++A+D A RG+D V++V NFD P D + Y+HR
Sbjct: 293 EVLVATDVAA-----------------------RGLDISGVTHVYNFDVPQDPESYVHRI 329
Query: 378 GRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLM 418
GRT R G A++F++ RE+D++ A+ + R+ D M
Sbjct: 330 GRTGRAGKTGMAMTFITPREKDMLR---AIEQTTKRKMDRM 367
>gi|209518298|ref|ZP_03267123.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
gi|209501217|gb|EEA01248.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
Length = 443
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 116/379 (30%), Positives = 197/379 (51%), Gaps = 37/379 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++A+ +LG+ PT IQ +AIP +L D+L A+TG+GKT F +P++Q++ ++ A
Sbjct: 13 VRAVNELGYTSPTPIQTQAIPAVLDGGDLLAGAQTGTGKTAGFTLPILQRLNSMPPAAGG 72
Query: 90 QE-TKALVLSPSKELCNQLHKNIQE----LTMKCSRDVKCVDISEQVDVSVQEPLLVERP 144
+ +AL+L+P++EL Q+ ++++ L +K + V I+ Q+D L
Sbjct: 73 KRVVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIDA------LKRGV 126
Query: 145 DIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAIL 204
DIVVATP R L H++ KT+DL S LEI+++DEAD + G+ D+K VL LP Q +L
Sbjct: 127 DIVVATPGRLLDHMQQKTIDL-SHLEILVLDEADRMLDMGFIHDIKRVLAKLPPKRQNLL 185
Query: 205 ASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNL 264
SAT S+++ +L +L +P ++++ + H + ++ ++ + + + + N
Sbjct: 186 FSATFSDEIKALADSLLDSPALIEVARRNTTAETVAQKIHPVDRDRKRELLTHLIRQHNW 245
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
Q ++F T +L L + IS ++ AR A+ +F G V++A+D
Sbjct: 246 FQ--VLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKDGTLQVLVATD 303
Query: 325 EKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384
A RGID + +V+NFD P + Y+HR GRT R
Sbjct: 304 IAA-----------------------RGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAG 340
Query: 385 NQGTALSFVSLREQDLMND 403
G A+S V + E L+ D
Sbjct: 341 ATGEAVSLVCVDELQLLKD 359
>gi|421868011|ref|ZP_16299663.1| ATP-dependent RNA helicase Bcep18194_A5658 [Burkholderia
cenocepacia H111]
gi|358071942|emb|CCE50541.1| ATP-dependent RNA helicase Bcep18194_A5658 [Burkholderia
cenocepacia H111]
Length = 494
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 117/386 (30%), Positives = 199/386 (51%), Gaps = 35/386 (9%)
Query: 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII- 81
F L L+AIA+ G+ PT IQ +AIP++L +DV+ A+TG+GKT +F++P+IQ+++
Sbjct: 16 FGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQRLLP 75
Query: 82 --NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL 139
N + +AL+L+P++EL +Q+ N+ ++ + VD++ Q
Sbjct: 76 QANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTP--LRSAVVFGGVDMNPQSAE 133
Query: 140 LVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199
L +I++ATP R L H++ KT +L ++I+++DEAD + G+ D++ +L LPK
Sbjct: 134 LRRGVEILIATPGRLLDHVQQKTANL-GQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192
Query: 200 YQAILASATLSEDVLSLKHLILRNPVILKL--EEPAIAPVSQLAHYHILAQEDEKATILY 257
Q +L SAT S ++ L LRNP +++ A V+Q+ + +A+ D++A ++
Sbjct: 193 RQTLLFSATFSGEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYD--VAEGDKQAAVVQ 250
Query: 258 TLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLY 317
L L Q I+F N+ +L LE+ + ++ + R A+ F +G
Sbjct: 251 LLRDRGLKQ--VIVFCNSKIGASRLARNLERDGVVASAIHGDKTQIERMQALDAFKRGEI 308
Query: 318 DVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRA 377
+ ++A+D A RG+D + VINFD P + Y+HR
Sbjct: 309 EALVATDVAA-----------------------RGLDIAELPAVINFDLPFSAEDYVHRI 345
Query: 378 GRTARGKNQGTALSFVSLREQDLMND 403
GRT R G ALS S E+ + D
Sbjct: 346 GRTGRAGATGDALSLCSPNERKQLAD 371
>gi|217972086|ref|YP_002356837.1| DEAD/DEAH box helicase [Shewanella baltica OS223]
gi|217497221|gb|ACK45414.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
Length = 515
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 119/386 (30%), Positives = 197/386 (51%), Gaps = 30/386 (7%)
Query: 19 LPFTFTLFCIP-LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMI 77
+ FT P L+A+A+ G+ P+ IQ +AIP +LQ KDV+ A+TG+GKT F +PM+
Sbjct: 1 MSFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPML 60
Query: 78 QKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQE 137
+ +++ AQ + +ALVL+P++EL Q+ ++++ T + ++ I V ++ Q
Sbjct: 61 E-LLSKGNRAQAGQVRALVLTPTRELAAQVAESVE--TYGKNLPLRSAVIFGGVPINPQI 117
Query: 138 PLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLP 197
L D++VATP R + K + S LEI+++DEAD + G+ D++ +L LP
Sbjct: 118 AKLRHGVDVLVATPGRLMDLYNQKAVKF-SQLEILVLDEADRMLDMGFIRDIRKILAILP 176
Query: 198 KLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILY 257
K Q ++ SAT S+++ L ++ NPV + + P A + + + + +K+ +L
Sbjct: 177 KQRQNLMFSATFSDEIRELAKGLVNNPVEISV-TPRNAAATTVKQWVCPVDKSQKSALLI 235
Query: 258 TLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLY 317
L+K N Q + ++F T +L LE I ++ AR A+ F G
Sbjct: 236 QLIKQNDWQ-QVLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQA 294
Query: 318 DVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRA 377
V++A+D A RG+D + V+NFD P + Y+HR
Sbjct: 295 RVLVATDIAA-----------------------RGLDIDQLPQVVNFDLPNVPEDYVHRI 331
Query: 378 GRTARGKNQGTALSFVSLREQDLMND 403
GRT R G A+S VS E L+ND
Sbjct: 332 GRTGRAGASGQAVSLVSNEEIKLLND 357
>gi|312796956|ref|YP_004029878.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
gi|312168731|emb|CBW75734.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
Length = 508
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 113/386 (29%), Positives = 201/386 (52%), Gaps = 35/386 (9%)
Query: 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIIN 82
F L LQAI + G+ +PT IQ +AIP++L +DV+ A+TG+GKT +F++P+IQ+++
Sbjct: 47 FGLAAPILQAIGEQGYTKPTPIQAQAIPIVLAGRDVMGAAQTGTGKTASFSLPIIQRLLP 106
Query: 83 LKQTAQV---QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL 139
L T+ +AL+L+P++EL +Q+ N+ + ++ + VD++ Q
Sbjct: 107 LASTSASPARHPVRALILTPTRELADQVAANVHAYAKHTA--LRSAVVFGGVDMNPQTAE 164
Query: 140 LVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199
L +I++ATP R L H++ K+ L + ++++++DEAD + G+ D++ +L LP
Sbjct: 165 LRRGVEILIATPGRLLDHVQQKSTSL-AQVQMLVLDEADRMLDMGFLPDLQRILNLLPSQ 223
Query: 200 YQAILASATLSEDVLSLKHLILRNPVILKL--EEPAIAPVSQLAHYHILAQEDEKATILY 257
Q +L SAT S ++ L LR+PV +++ + V Q+ +A+ D++A ++
Sbjct: 224 RQTLLFSATFSAEIKKLASTYLRDPVTIEVARSNSTASNVRQIVFE--VAEPDKQAAVVQ 281
Query: 258 TLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLY 317
+ + L Q I+F N+ +L LE+ + ++ + R A+ F +G
Sbjct: 282 LIRQRELKQ--VIVFCNSKIGASRLAKQLERDGVVATAIHGDRSQSERMQALDAFKRGEI 339
Query: 318 DVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRA 377
+ ++A+D A RG+D + VINFD P + + Y+HR
Sbjct: 340 EALVATDVAA-----------------------RGLDIAELPAVINFDLPFNAEDYVHRI 376
Query: 378 GRTARGKNQGTALSFVSLREQDLMND 403
GRT R G ALS S E+ + D
Sbjct: 377 GRTGRAGASGDALSLFSGNERKQLAD 402
>gi|329891295|ref|ZP_08269638.1| putative ATP-dependent RNA helicase rhlE [Brevundimonas diminuta
ATCC 11568]
gi|328846596|gb|EGF96160.1| putative ATP-dependent RNA helicase rhlE [Brevundimonas diminuta
ATCC 11568]
Length = 589
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 114/374 (30%), Positives = 192/374 (51%), Gaps = 28/374 (7%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L A+A G+ +PT IQ +AIP +++ KD+L A+TG+GKT AFA+P++ ++ + +
Sbjct: 16 LTALAATGYEKPTPIQAKAIPDVMKGKDLLGIAQTGTGKTAAFALPILHRLAENRVAPRP 75
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ T+AL+LSP++EL Q+ + ++ V I V QE L + D++VA
Sbjct: 76 RTTRALILSPTRELATQIGDSFKQYGAHLGFRVAV--IFGGVKYGAQERALQQGLDVLVA 133
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
P R L H++ KTLDL S+ EI ++DEAD + G+ ++ ++ +P Q + SAT+
Sbjct: 134 APGRLLDHIQQKTLDL-STCEIFVLDEADQMLDLGFIKPIRQIVSRIPAKRQNLFFSATM 192
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
++ L +L++PV +++ P V ++ I ++ +K +L L + +
Sbjct: 193 PSEIGKLAGELLKDPVKVQV-TPQATTVERIKQSVIWVEQGKKRALLTELFS-DPAYTRC 250
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
++F T K+ YLE + ++ R A+ F G V++A+D A
Sbjct: 251 LVFTKTKHGADKVAAYLEAGGVEAGAIHGNKSQPQRERALEAFKNGKLRVLVATDIAA-- 308
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
RGID V++V+NF+ P + Y+HR GRTAR GTA
Sbjct: 309 ---------------------RGIDVDKVTHVVNFELPYVPEAYVHRIGRTARAGKDGTA 347
Query: 390 LSFVSLREQDLMND 403
+SFV+ E L+ D
Sbjct: 348 ISFVAGDEMKLLKD 361
>gi|307352826|ref|YP_003893877.1| DEAD/DEAH box helicase domain-containing protein [Methanoplanus
petrolearius DSM 11571]
gi|307156059|gb|ADN35439.1| DEAD/DEAH box helicase domain protein [Methanoplanus petrolearius
DSM 11571]
Length = 536
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 117/368 (31%), Positives = 190/368 (51%), Gaps = 32/368 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AI +G+ EPT IQ+R+IPLIL +DV +A+TG+GKT AFAIP+I+KI K + Q
Sbjct: 17 LRAIEDMGFEEPTPIQQRSIPLILSGRDVTGQAQTGTGKTAAFAIPLIEKIEPEKCSVQ- 75
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
++VLSP++EL Q+ + L +K +D++ + + + Q L + I++
Sbjct: 76 ----SIVLSPTRELTIQISEEFNRL-LKYRKDIRVLPVYGGQAIERQLHELKKGVHIIIG 130
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + H+K TL L S ++ V++DEAD + G+ +DM+ +L P Q IL SAT+
Sbjct: 131 TPGRVMDHMKRGTLSL-SGIKTVVLDEADQMLEMGFREDMEEILSKAPGERQTILFSATM 189
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+ +L + + P + + P V + ++ +E +K +L L+ +N +
Sbjct: 190 PKPILKISKSFQKKPEFVTI-NPGQLTVPLIEQKYLEVREKDKLEVLCRLIDIN-SSDLS 247
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
+IF NT +L L L+ ++ + R + +F G D++IA+D A
Sbjct: 248 MIFCNTKKAVDELSEMLRSRGYFAEGLHGDMKQQQRDRVMSRFRSGSIDILIATDVAA-- 305
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
RGID + V N+D P D++ YIHR GRT R G +
Sbjct: 306 ---------------------RGIDIDDIDVVYNYDVPQDVEYYIHRIGRTGRAGKSGMS 344
Query: 390 LSFVSLRE 397
+FVS +E
Sbjct: 345 YTFVSPKE 352
>gi|270296763|ref|ZP_06202962.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|270272750|gb|EFA18613.1| conserved hypothetical protein [Bacteroides sp. D20]
Length = 429
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 117/372 (31%), Positives = 200/372 (53%), Gaps = 34/372 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+ + + E T IQE++IP+IL+ +D++ A+TG+GKT A+ +P++ K+ A
Sbjct: 13 LEALDAMRFEECTPIQEKSIPVILEGRDLIAVAQTGTGKTAAYLLPILNKLSEGGHPADA 72
Query: 90 QETKALVLSPSKELCNQLHKNIQELT--MKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
+V++P++EL Q+ + ++ + M S V ++ + Q+ L D+V
Sbjct: 73 --INCIVMAPTRELAQQIDQQMEGFSYFMPVS-SVAVYGGNDGILFEQQKRGLTLGADVV 129
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
+ATP R +AHL +DL S + I+DEAD + G+ DD+ ++KFLPK Q I+ SA
Sbjct: 130 IATPGRLIAHLSLGYVDL-SRVSYFILDEADRMLDMGFYDDIMQIVKFLPKERQTIMFSA 188
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIA-PVSQLAHYHILAQEDEKATILYTLLKLNLVQ 266
T+ + L IL NP +KL A++ P ++ + E++K I+ +L +
Sbjct: 189 TMPAKIQQLAGNILNNPAEVKL---AVSKPAEKIVQAAYVCYENQKLGIIRSLFAEETPE 245
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
+ IIF ++ K ++ L+Q K++ ++S+L R +Y+F G ++++A+D
Sbjct: 246 -RVIIFASSKLKVKEVTKALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRINILVATDI- 303
Query: 327 ALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQ 386
V+RGID + VIN+D P D + Y+HR GRTAR N
Sbjct: 304 ----------------------VARGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANND 341
Query: 387 GTALSFVSLREQ 398
G A++FVS +EQ
Sbjct: 342 GVAITFVSEKEQ 353
>gi|423344472|ref|ZP_17322184.1| hypothetical protein HMPREF1077_03614 [Parabacteroides johnsonii
CL02T12C29]
gi|409212870|gb|EKN05904.1| hypothetical protein HMPREF1077_03614 [Parabacteroides johnsonii
CL02T12C29]
Length = 426
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 120/372 (32%), Positives = 195/372 (52%), Gaps = 33/372 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L + + +LE T +QE IP+IL+ KD++ A+TG+GKT A+ +P+I ++ K
Sbjct: 13 LDGLDAMNFLETTPVQELTIPVILEGKDIIACAQTGTGKTAAYVLPVINEL--SKGLHPA 70
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCS-RDVKCVDISEQVDVSVQEPLLVERPDIVV 148
A++++P++EL Q+ + I+ T V ++ + Q+ + DIV+
Sbjct: 71 NAINAIIMAPTRELAQQIDQQIEGFTYFVPVSAVAVYGGTDGIAWEQQKRGMEMGADIVI 130
Query: 149 ATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
ATP R L+H+K T+DL S + I+DEAD + G+ DD+ V K LP+ Q I+ SAT
Sbjct: 131 ATPGRLLSHIKLGTVDL-SQVSFFILDEADRMLDMGFYDDIMQVYKLLPETCQTIMFSAT 189
Query: 209 LSEDVLSLKHLILRNPVILKLEEPAIA-PVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
+ + +L IL+NP +K+ AI+ P + + + +K IL L + Q
Sbjct: 190 MPPKIRTLAQTILKNPEEVKI---AISRPPETIMQTAYVCYDMQKLRILEDLFSQSRPQ- 245
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
+ IIF ++ K +L L++ K + ++S+L R + +F G D+++A+D
Sbjct: 246 RVIIFSSSKMKVKELASTLKRMKFNVAAMHSDLEQSQREEVMKEFKNGRIDILVATDV-- 303
Query: 328 LETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKN-Q 386
VSRGID + VINFD P D + Y+HR GRTARG N +
Sbjct: 304 ---------------------VSRGIDINDIKLVINFDIPHDPEDYVHRIGRTARGTNGE 342
Query: 387 GTALSFVSLREQ 398
G A++F+S EQ
Sbjct: 343 GLAITFISTEEQ 354
>gi|189351106|ref|YP_001946734.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
gi|189335128|dbj|BAG44198.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
Length = 487
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 117/386 (30%), Positives = 200/386 (51%), Gaps = 35/386 (9%)
Query: 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII- 81
F L L+AIA+ G+ PT IQ +AIP++L +DV+ A+TG+GKT +F++P+IQ+++
Sbjct: 16 FGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQRLLP 75
Query: 82 --NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL 139
N + +AL+L+P++EL +Q+ N+ ++ + VD++ Q
Sbjct: 76 QANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTP--LRSAVVFGGVDMNPQMAE 133
Query: 140 LVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199
L +I++ATP R L H++ KT +L ++I+++DEAD + G+ D++ +L LPK
Sbjct: 134 LRRGVEILIATPGRLLDHVQQKTANL-GQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192
Query: 200 YQAILASATLSEDVLSLKHLILRNPVILKL--EEPAIAPVSQLAHYHILAQEDEKATILY 257
Q +L SAT S ++ L LRNP +++ A V+Q+ + +A+ D++A ++
Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYD--VAEGDKQAAVVQ 250
Query: 258 TLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLY 317
L L Q I+F N+ +L LE+ + ++ + R A+ F +G
Sbjct: 251 LLRDRGLKQ--VIVFCNSKIGASRLARQLERDGVVASAIHGDKSQLERMQALDAFKRGEI 308
Query: 318 DVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRA 377
+ ++A+D A RG+D + VINFD P + + Y+HR
Sbjct: 309 EALVATDVAA-----------------------RGLDIAELPAVINFDLPFNAEDYVHRI 345
Query: 378 GRTARGKNQGTALSFVSLREQDLMND 403
GRT R G ALS S E+ + D
Sbjct: 346 GRTGRAGATGDALSLCSPNERKQLAD 371
>gi|386342411|ref|YP_006038777.1| DEAD/DEAH box helicase [Shewanella baltica OS117]
gi|334864812|gb|AEH15283.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS117]
Length = 515
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 119/386 (30%), Positives = 197/386 (51%), Gaps = 30/386 (7%)
Query: 19 LPFTFTLFCIP-LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMI 77
+ FT P L+A+A+ G+ P+ IQ +AIP +LQ KDV+ A+TG+GKT F +PM+
Sbjct: 1 MSFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPML 60
Query: 78 QKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQE 137
+ +++ AQ + +ALVL+P++EL Q+ ++++ T + ++ I V ++ Q
Sbjct: 61 E-LLSKGNRAQAGQVRALVLTPTRELAAQVAESVE--TYGKNLPLRSAVIFGGVPINPQI 117
Query: 138 PLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLP 197
L D++VATP R + K + S LEI+++DEAD + G+ D++ +L LP
Sbjct: 118 AKLRHGVDVLVATPGRLMDLYNQKAVKF-SQLEILVLDEADRMLDMGFIRDIRKILAILP 176
Query: 198 KLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILY 257
K Q ++ SAT S+++ L ++ NPV + + P A + + + + +K+ +L
Sbjct: 177 KQRQNLMFSATFSDEIRELAKGLVNNPVEISV-TPRNAAATTVKQWVCPVDKSQKSALLI 235
Query: 258 TLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLY 317
L+K N Q + ++F T +L LE I ++ AR A+ F G
Sbjct: 236 QLIKQNDWQ-QVLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQA 294
Query: 318 DVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRA 377
V++A+D A RG+D + V+NFD P + Y+HR
Sbjct: 295 RVLVATDIAA-----------------------RGLDIDQLPQVVNFDLPNVPEDYVHRI 331
Query: 378 GRTARGKNQGTALSFVSLREQDLMND 403
GRT R G A+S VS E L+ND
Sbjct: 332 GRTGRAGASGQAVSLVSNEEIKLLND 357
>gi|403217172|emb|CCK71667.1| hypothetical protein KNAG_0H02520 [Kazachstania naganishii CBS
8797]
Length = 754
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 118/377 (31%), Positives = 202/377 (53%), Gaps = 37/377 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ +A LG+ +P+ IQ IP+ LQ KDV+ A TGSGKT AF IP+I+++ L + ++V
Sbjct: 251 LKGLAHLGYTKPSPIQSATIPVALQGKDVIAGAVTGSGKTAAFMIPIIERL--LFKPSKV 308
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQV---DVSVQEPLLVERPDI 146
T+ +VL+P++EL Q I ++ K + V + V ++ QE L RPDI
Sbjct: 309 AMTRVIVLTPTRELAIQ----ISDVAKKIGQFVSGLTFGLAVGGLNLRQQEQALKARPDI 364
Query: 147 VVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
V+ATP R + H++ S+EI+++DEAD + G++D++K ++ LP Q +L S
Sbjct: 365 VIATPGRFIDHIRNSASFNVDSVEILVLDEADRMLEEGFQDELKEIMTMLPSKRQNLLFS 424
Query: 207 ATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAH--YHILAQEDEKATILYTLLKL-- 262
AT++ + SL L LR PV + ++ P A S+L I +++ K +L+ L++
Sbjct: 425 ATMNSKIKSLVSLSLRRPVRIMIDPPKQA-ASKLTQEFVRIRKRDNLKPALLFNLIRKLD 483
Query: 263 NLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIA 322
+ Q + ++FV + ++L++ L ++ L+ L + R +V +F
Sbjct: 484 SNAQKRIVVFVARKETAHRLRIILGLLGMAVAELHGSLTQEQRLESVTRF---------- 533
Query: 323 SDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTAR 382
K+L+ P + T+ SRG+D + VIN+D P + Y+HR GRTAR
Sbjct: 534 ---KSLDVPVLICTDL----------ASRGLDIPKIEVVINYDMPKSHEIYLHRVGRTAR 580
Query: 383 GKNQGTALSFVSLREQD 399
+G +++ V Q+
Sbjct: 581 AGREGRSVTLVGESSQE 597
>gi|424918576|ref|ZP_18341940.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WSM597]
gi|392854752|gb|EJB07273.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WSM597]
Length = 567
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 116/384 (30%), Positives = 196/384 (51%), Gaps = 35/384 (9%)
Query: 20 PFTFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQK 79
P TLF +LG PT IQE+AIPL+L+ +D++ A+TG+GKT AF +P+I+K
Sbjct: 12 PIVATLF--------QLGIETPTPIQEQAIPLLLEGRDLIGLAQTGTGKTAAFGLPLIEK 63
Query: 80 IINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL 139
++ ++ + T+ L+L+P++EL NQ+ +++++ K + V V ++ Q+
Sbjct: 64 LLADERRPDNRTTRTLILAPTRELVNQIAESLKKFIRKSHLRINVV--VGGVSINKQQLQ 121
Query: 140 LVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199
L + D++VATP R L + + + L +++ +++DEAD + G+ D++ + K +PK
Sbjct: 122 LEKGTDVLVATPGRLLDLINRRAISL-TTVRYLVLDEADQMLDLGFVHDLRKIAKMVPKK 180
Query: 200 YQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTL 259
Q +L SAT+ + + L L +PV +++ P A + H +A +++K +L
Sbjct: 181 RQTMLFSATMPKAIADLAGDYLVDPVKVEVTPPGKAADKVEQYVHFVAGKNDKTELLRKS 240
Query: 260 LKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDV 319
L N G+ I+F+ T KL +LE S ++ R A+ F G
Sbjct: 241 LTEN-PDGRAIVFLRTKHGAEKLMKHLENIGYSVASIHGNKSQGQRERALKAFRDGSIKT 299
Query: 320 IIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGR 379
+IA+D A RGID VS+V N+D P Y+HR GR
Sbjct: 300 LIATDVAA-----------------------RGIDIPAVSHVYNYDLPEVPDAYVHRIGR 336
Query: 380 TARGKNQGTALSFVSLREQDLMND 403
TAR G A++F + E L+ D
Sbjct: 337 TARAGRDGIAIAFCAPDEAKLLRD 360
>gi|378707268|ref|YP_005272162.1| DEAD/DEAH box helicase [Shewanella baltica OS678]
gi|418024343|ref|ZP_12663326.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS625]
gi|315266257|gb|ADT93110.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
gi|353536303|gb|EHC05862.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS625]
Length = 514
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 119/386 (30%), Positives = 197/386 (51%), Gaps = 30/386 (7%)
Query: 19 LPFTFTLFCIP-LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMI 77
+ FT P L+A+A+ G+ P+ IQ +AIP +LQ KDV+ A+TG+GKT F +PM+
Sbjct: 1 MSFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPML 60
Query: 78 QKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQE 137
+ +++ AQ + +ALVL+P++EL Q+ ++++ T + ++ I V ++ Q
Sbjct: 61 E-LLSKGNRAQAGQVRALVLTPTRELAAQVAESVE--TYGKNLPLRSAVIFGGVPINPQI 117
Query: 138 PLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLP 197
L D++VATP R + K + S LEI+++DEAD + G+ D++ +L LP
Sbjct: 118 AKLRHGVDVLVATPGRLMDLYNQKAVKF-SQLEILVLDEADRMLDMGFIRDIRKILAILP 176
Query: 198 KLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILY 257
K Q ++ SAT S+++ L ++ NPV + + P A + + + + +K+ +L
Sbjct: 177 KQRQNLMFSATFSDEIRELAKGLVNNPVEISV-TPRNAAATTVKQWVCPVDKSQKSALLI 235
Query: 258 TLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLY 317
L+K N Q + ++F T +L LE I ++ AR A+ F G
Sbjct: 236 QLIKQNDWQ-QVLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQA 294
Query: 318 DVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRA 377
V++A+D A RG+D + V+NFD P + Y+HR
Sbjct: 295 RVLVATDIAA-----------------------RGLDIDQLPQVVNFDLPNVPEDYVHRI 331
Query: 378 GRTARGKNQGTALSFVSLREQDLMND 403
GRT R G A+S VS E L+ND
Sbjct: 332 GRTGRAGASGQAVSLVSNEEIKLLND 357
>gi|373950799|ref|ZP_09610760.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
gi|386323368|ref|YP_006019485.1| DEAD/DEAH box helicase [Shewanella baltica BA175]
gi|333817513|gb|AEG10179.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
gi|373887399|gb|EHQ16291.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
Length = 515
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 119/386 (30%), Positives = 197/386 (51%), Gaps = 30/386 (7%)
Query: 19 LPFTFTLFCIP-LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMI 77
+ FT P L+A+A+ G+ P+ IQ +AIP +LQ KDV+ A+TG+GKT F +PM+
Sbjct: 1 MSFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPML 60
Query: 78 QKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQE 137
+ +++ AQ + +ALVL+P++EL Q+ ++++ T + ++ I V ++ Q
Sbjct: 61 E-LLSKGNRAQAGQVRALVLTPTRELAAQVAESVE--TYGKNLPLRSAVIFGGVPINPQI 117
Query: 138 PLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLP 197
L D++VATP R + K + S LEI+++DEAD + G+ D++ +L LP
Sbjct: 118 AKLRHGVDVLVATPGRLMDLYNQKAVKF-SQLEILVLDEADRMLDMGFIRDIRKILAILP 176
Query: 198 KLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILY 257
K Q ++ SAT S+++ L ++ NPV + + P A + + + + +K+ +L
Sbjct: 177 KQRQNLMFSATFSDEIRELAKGLVNNPVEISV-TPRNAAATTVKQWVCPVDKSQKSALLI 235
Query: 258 TLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLY 317
L+K N Q + ++F T +L LE I ++ AR A+ F G
Sbjct: 236 QLIKQNDWQ-QVLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQA 294
Query: 318 DVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRA 377
V++A+D A RG+D + V+NFD P + Y+HR
Sbjct: 295 RVLVATDIAA-----------------------RGLDIDQLPQVVNFDLPNVPEDYVHRI 331
Query: 378 GRTARGKNQGTALSFVSLREQDLMND 403
GRT R G A+S VS E L+ND
Sbjct: 332 GRTGRAGASGQAVSLVSNEEIKLLND 357
>gi|212558739|gb|ACJ31193.1| Helicase:DbpA, RNA-binding:DEAD/DEAH box helicase [Shewanella
piezotolerans WP3]
Length = 611
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 116/372 (31%), Positives = 193/372 (51%), Gaps = 32/372 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+ +LG+ +PT IQ +I ++ KD+L +A+TG+GKTGAFA+P++ I + Q+
Sbjct: 18 LRALDELGYEKPTPIQAASIDPLMAGKDILGQAQTGTGKTGAFALPLLNSIDPNTNSPQI 77
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
LVL+P++EL Q+ + K + + + I + Q L P I+V
Sbjct: 78 -----LVLAPTRELAVQVAEAFGSYA-KFMKGLHVLPIYGGQSMHQQLNALRRGPQIIVG 131
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + H++ TL L+ SL+ +++DEAD + G+ DD++ +L+ PK Q L SAT+
Sbjct: 132 TPGRVMDHMRRGTLKLE-SLKAMVLDEADEMLKMGFIDDIEWILEHTPKQRQLALFSATM 190
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + + + L PV +K+ V + + + K L +L++ +G
Sbjct: 191 PEQIKRVANKYLSEPVHVKIAA-TTTTVETIEQRFVQVSQHNKLEALVRVLEVEKTEG-I 248
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
IIFV T + C +L LE ++ L+ ++ +AR AV Q +G D+IIA+D A
Sbjct: 249 IIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDIIIATDVAA-- 306
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
RG+D + + +V+N+D P D + Y+HR GRT R G A
Sbjct: 307 ---------------------RGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMA 345
Query: 390 LSFVSLREQDLM 401
+ FV+ RE ++
Sbjct: 346 ILFVTHREMRML 357
>gi|206560771|ref|YP_002231536.1| putative ATP-dependent RNA helicase 2 [Burkholderia cenocepacia
J2315]
gi|444363801|ref|ZP_21164182.1| DEAD/DEAH box helicase [Burkholderia cenocepacia BC7]
gi|444368994|ref|ZP_21168777.1| DEAD/DEAH box helicase [Burkholderia cenocepacia K56-2Valvano]
gi|198036813|emb|CAR52713.1| putative ATP-dependent RNA helicase 2 [Burkholderia cenocepacia
J2315]
gi|443594238|gb|ELT62906.1| DEAD/DEAH box helicase [Burkholderia cenocepacia BC7]
gi|443599860|gb|ELT68103.1| DEAD/DEAH box helicase [Burkholderia cenocepacia K56-2Valvano]
Length = 494
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 117/386 (30%), Positives = 199/386 (51%), Gaps = 35/386 (9%)
Query: 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII- 81
F L L+AIA+ G+ PT IQ +AIP++L +DV+ A+TG+GKT +F++P+IQ+++
Sbjct: 16 FGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQRLLP 75
Query: 82 --NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL 139
N + +AL+L+P++EL +Q+ N+ ++ + VD++ Q
Sbjct: 76 QANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTP--LRSAVVFGGVDMNPQSAE 133
Query: 140 LVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199
L +I++ATP R L H++ KT +L ++I+++DEAD + G+ D++ +L LPK
Sbjct: 134 LRRGVEILIATPGRLLDHVQQKTANL-GQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192
Query: 200 YQAILASATLSEDVLSLKHLILRNPVILKL--EEPAIAPVSQLAHYHILAQEDEKATILY 257
Q +L SAT S ++ L LRNP +++ A V+Q+ + +A+ D++A ++
Sbjct: 193 RQTLLFSATFSGEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYD--VAEGDKQAAVVQ 250
Query: 258 TLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLY 317
L L Q I+F N+ +L LE+ + ++ + R A+ F +G
Sbjct: 251 LLRDRGLKQ--VIVFCNSKIGASRLARNLERDGVVASAIHGDKTQIERMQALDAFKRGEI 308
Query: 318 DVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRA 377
+ ++A+D A RG+D + VINFD P + Y+HR
Sbjct: 309 EALVATDVAA-----------------------RGLDIAELPAVINFDLPFSAEDYVHRI 345
Query: 378 GRTARGKNQGTALSFVSLREQDLMND 403
GRT R G ALS S E+ + D
Sbjct: 346 GRTGRAGATGDALSLCSPNERKQLAD 371
>gi|157875861|ref|XP_001686302.1| putative ATP-dependent RNA helicase [Leishmania major strain
Friedlin]
gi|68129376|emb|CAJ07917.1| putative ATP-dependent RNA helicase [Leishmania major strain
Friedlin]
Length = 803
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 124/381 (32%), Positives = 190/381 (49%), Gaps = 37/381 (9%)
Query: 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII 81
+F L L AI K G+ PT IQ +AIP +LQ DV+ ARTGSGKT AF IPM+
Sbjct: 26 SFNLEKPLLDAILKQGFSVPTPIQRKAIPPMLQGNDVVAMARTGSGKTAAFLIPMLN--- 82
Query: 82 NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLV 141
LK A++ + LVLSP++EL Q+ +N + D++ + + Q LL
Sbjct: 83 TLKAHAKIVGIRGLVLSPTRELSLQILRN--GFALNKFLDLRFAALVGGDSMDQQFELLA 140
Query: 142 ERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQ 201
PD+VVATP R L ++ +L L +S+ +++DEAD +F G + + A+++ LP+ Q
Sbjct: 141 SNPDVVVATPGRLLHIMEEASLHL-TSVRCLVLDEADRLFELGLQPQIGAIMQKLPESCQ 199
Query: 202 AILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLK 261
L SAT+ + L NPV+++L+ + QL L + DEK L LLK
Sbjct: 200 RALFSATMPTVLAEFTSAGLHNPVVIRLDS-EMKLSDQLKQSAFLVRNDEKVAALIVLLK 258
Query: 262 LNLVQG-------KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQ 314
L G + +IF + L++ L + IST ++ ++ +AR AV F +
Sbjct: 259 RVLHVGEAAANSAQALIFSESKFHVEFLQMILTHYSISTSAVHGQMDQEARRLAVRSFAK 318
Query: 315 GLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYI 374
V++ +D A RG+D + NV+NF FP + + ++
Sbjct: 319 RETSVMVVTDVAA-----------------------RGLDLPLLDNVVNFSFPFNPKLFV 355
Query: 375 HRAGRTARGKNQGTALSFVSL 395
HR GR AR GTA S ++
Sbjct: 356 HRVGRVARAGRSGTAYSIMTF 376
>gi|402701108|ref|ZP_10849087.1| DEAD/DEAH box helicase-like protein [Pseudomonas fragi A22]
Length = 618
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 118/397 (29%), Positives = 201/397 (50%), Gaps = 37/397 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII-----NLK 84
++AI G+ EPT +Q+RAIP +LQ +D++V A+TG+GKTG FA+P+++K+ +
Sbjct: 13 VRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILEKLFPNGHPDKS 72
Query: 85 QTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVD--ISEQVDVSVQEPLLVE 142
Q ++ + LVL+P++EL Q+H++ + +RD+K V + V + Q L
Sbjct: 73 QRHGPRQPRVLVLTPTRELAAQVHESFKLY----ARDLKFVSACVFGGVGTNPQVQALAR 128
Query: 143 RPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQA 202
D++VA P R L ++DL S +EI+++DEAD + G+ D+K VL LP Q
Sbjct: 129 GVDVLVACPGRLLDLAGQGSVDL-SHVEILVLDEADRMLDMGFVHDVKKVLARLPSKRQN 187
Query: 203 ILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKL 262
+L SAT S+D+ L +LRNP +++ P V ++ K +L L+
Sbjct: 188 LLFSATFSKDITDLAGKLLRNPERIEVTPPNTT-VERIEQRVFRLPATHKRALLAHLITA 246
Query: 263 NLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIA 322
+ + ++F T +L YL++ +S ++ AR A+ F G +++A
Sbjct: 247 GAWE-QVLVFTRTKHGANRLAEYLDKHGLSAVAIHGNKSQNARTKALADFKAGAVRILVA 305
Query: 323 SDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTAR 382
+D A RG+D + +V+NF+ P + Y+HR GRT R
Sbjct: 306 TDIAA-----------------------RGLDIDQLPHVVNFELPNVDEDYVHRIGRTGR 342
Query: 383 GKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMN 419
G A+S V+ E+ L+ ++ + + DLM
Sbjct: 343 AGRSGEAISLVAPDEEKLLKSIERMTKQKIADGDLMG 379
>gi|429770137|ref|ZP_19302216.1| putative ATP-dependent RNA helicase RhlE [Brevundimonas diminuta
470-4]
gi|429185399|gb|EKY26379.1| putative ATP-dependent RNA helicase RhlE [Brevundimonas diminuta
470-4]
Length = 491
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 114/374 (30%), Positives = 191/374 (51%), Gaps = 28/374 (7%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L A+A G+ +PT IQ ++IP +++ KD+L A+TG+GKT AFA+P++ ++ + +
Sbjct: 8 LTALASTGYEKPTPIQAKSIPDVMKGKDLLGIAQTGTGKTAAFALPILHRLAENRVAPKP 67
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ T+AL+LSP++EL Q+ + ++ V V V QE L + D++VA
Sbjct: 68 RTTRALILSPTRELATQIADSFKQYGAHLGFRVAVV--FGGVKYGPQERALQQGLDVLVA 125
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
P R L H++ KTLDL SS EI ++DEAD + G+ ++ ++ +P Q + SAT+
Sbjct: 126 APGRLLDHIQQKTLDL-SSTEIFVLDEADQMLDLGFIKPIRQIVSRIPAKRQNLFFSATM 184
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
++ L +L++PV +++ P V ++ I ++ +K +L L +
Sbjct: 185 PSEIGKLAGELLKDPVKVQV-TPQATTVERIKQSVIWVEQGKKRALLTELFSAPAYT-RC 242
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
++F T K+ YLE + ++ R A+ F G V++A+D A
Sbjct: 243 LVFTKTKHGADKVAAYLEAGGVEAGAIHGNKSQPQRERALEAFKNGKLRVLVATDIAA-- 300
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
RGID V++V+NF+ P + Y+HR GRTAR GTA
Sbjct: 301 ---------------------RGIDVDKVTHVVNFELPYVPEAYVHRIGRTARAGKDGTA 339
Query: 390 LSFVSLREQDLMND 403
+SFV+ E L+ D
Sbjct: 340 ISFVAGDEMKLLKD 353
>gi|161524137|ref|YP_001579149.1| DEAD/DEAH box helicase [Burkholderia multivorans ATCC 17616]
gi|160341566|gb|ABX14652.1| DEAD/DEAH box helicase domain protein [Burkholderia multivorans
ATCC 17616]
Length = 509
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 117/386 (30%), Positives = 200/386 (51%), Gaps = 35/386 (9%)
Query: 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII- 81
F L L+AIA+ G+ PT IQ +AIP++L +DV+ A+TG+GKT +F++P+IQ+++
Sbjct: 38 FGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQRLLP 97
Query: 82 --NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL 139
N + +AL+L+P++EL +Q+ N+ ++ + VD++ Q
Sbjct: 98 QANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTP--LRSAVVFGGVDMNPQMAE 155
Query: 140 LVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199
L +I++ATP R L H++ KT +L ++I+++DEAD + G+ D++ +L LPK
Sbjct: 156 LRRGVEILIATPGRLLDHVQQKTANL-GQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 214
Query: 200 YQAILASATLSEDVLSLKHLILRNPVILKL--EEPAIAPVSQLAHYHILAQEDEKATILY 257
Q +L SAT S ++ L LRNP +++ A V+Q+ + +A+ D++A ++
Sbjct: 215 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYD--VAEGDKQAAVVQ 272
Query: 258 TLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLY 317
L L Q I+F N+ +L LE+ + ++ + R A+ F +G
Sbjct: 273 LLRDRGLKQ--VIVFCNSKIGASRLARQLERDGVVASAIHGDKSQLERMQALDAFKRGEI 330
Query: 318 DVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRA 377
+ ++A+D A RG+D + VINFD P + + Y+HR
Sbjct: 331 EALVATDVAA-----------------------RGLDIAELPAVINFDLPFNAEDYVHRI 367
Query: 378 GRTARGKNQGTALSFVSLREQDLMND 403
GRT R G ALS S E+ + D
Sbjct: 368 GRTGRAGATGDALSLCSPNERKQLAD 393
>gi|157376983|ref|YP_001475583.1| DEAD/DEAH box helicase [Shewanella sediminis HAW-EB3]
gi|157319357|gb|ABV38455.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
HAW-EB3]
Length = 513
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 118/386 (30%), Positives = 196/386 (50%), Gaps = 30/386 (7%)
Query: 19 LPFTFTLFCIP-LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMI 77
+ FT P L+A+A+ G+ P+ IQ +AIP +L+ KDV+ A+TG+GKT F +P++
Sbjct: 23 MSFTSLGLSAPILKAVAQKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLL 82
Query: 78 QKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQE 137
+ ++ AQ ++ +ALVL+P++EL Q+ ++++ T + ++ + V + Q
Sbjct: 83 E-LLTRGNRAQAKQVRALVLTPTRELAAQVAESVE--TYGKNLPLRSAVVFGGVGIGPQI 139
Query: 138 PLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLP 197
L + DI+VATP R L + L+ + LE++I+DEAD + G+ D+K +LK LP
Sbjct: 140 SKLGKGVDILVATPGRLLDLFNQRALNF-NQLEVLILDEADRMLDMGFIHDIKKILKVLP 198
Query: 198 KLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILY 257
Q ++ SAT S+D+ L ++ NPV + + P A + Y + +K L
Sbjct: 199 AKRQNLMFSATFSDDIRKLAKGLVNNPVEISV-TPRNATAKTVEQYIYQVDQKQKTAALI 257
Query: 258 TLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLY 317
L+K N + + ++F T ++ LE ++ ++ AR A+ F G
Sbjct: 258 HLIKQNDWK-QVLVFSRTKHGANRIAKNLEANDLTAAAIHGNKSQGARTKALANFKSGEV 316
Query: 318 DVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRA 377
V++A+D A RGID + NV+NFD P + Y+HR
Sbjct: 317 RVLVATDIAA-----------------------RGIDIDQLPNVVNFDLPNVPEDYVHRI 353
Query: 378 GRTARGKNQGTALSFVSLREQDLMND 403
GRT R G A+S VS E L+ D
Sbjct: 354 GRTGRAGADGQAVSLVSGDESKLLRD 379
>gi|124485198|ref|YP_001029814.1| hypothetical protein Mlab_0371 [Methanocorpusculum labreanum Z]
gi|124362739|gb|ABN06547.1| DEAD/DEAH box helicase domain protein [Methanocorpusculum labreanum
Z]
Length = 656
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 124/379 (32%), Positives = 188/379 (49%), Gaps = 35/379 (9%)
Query: 22 TFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQ 78
TF F I LQAI +G+ EPT IQ AIP IL KDV +A+TG+GKT AF IP+I+
Sbjct: 6 TFAEFAISEELLQAIGDMGFEEPTPIQAMAIPQILDGKDVTGQAQTGTGKTAAFGIPIIE 65
Query: 79 KIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEP 138
++ + Q ALVLSP++EL Q + L MK + + V I + Q
Sbjct: 66 RLDPDNKNVQ-----ALVLSPTRELAIQTAEEFSRL-MKYKKGLNVVPIYGGQPIERQLR 119
Query: 139 LLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPK 198
L +V+ TP R + H+K TL L S+ + I+DEAD + G+ +D++ + + PK
Sbjct: 120 ALKGTVQVVIGTPGRVIDHIKRGTLHL-DSVTMFILDEADQMLDMGFREDIEDIFRDTPK 178
Query: 199 LYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYT 258
Q IL SAT+ + +L + R+P +K+ + V Q+ +I +E +K L
Sbjct: 179 DRQTILFSATMPQPILDITRRFQRDPQFVKITRKELT-VPQIEQTYIEVRERDKLEALCR 237
Query: 259 LLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYD 318
L +N + ++F NT L ++ L+ ++ + R + +F G D
Sbjct: 238 TLDMNNPE-LALVFCNTKRTVDDLMSRMQARGYFVEALHGDMKQQQRDRVMARFRSGSID 296
Query: 319 VIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAG 378
V+IA+D A RGID V V N+D P D++ Y+HR G
Sbjct: 297 VLIATDVAA-----------------------RGIDVDDVDIVFNYDVPQDVEYYVHRIG 333
Query: 379 RTARGKNQGTALSFVSLRE 397
RTAR G +++FV+ RE
Sbjct: 334 RTARAGRTGKSVTFVAPRE 352
>gi|418034442|ref|ZP_12672914.1| ATP-dependent RNA helicase (cold shock) [Bacillus subtilis subsp.
subtilis str. SC-8]
gi|351468695|gb|EHA28904.1| ATP-dependent RNA helicase (cold shock) [Bacillus subtilis subsp.
subtilis str. SC-8]
Length = 480
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 115/396 (29%), Positives = 211/396 (53%), Gaps = 46/396 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++AI ++G+ E T IQ + IPL L NKDV+ +A+TG+GKT AF IP+++KI +
Sbjct: 1 MKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLVEKI-----NPES 55
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+A+V++P++EL Q+ + + ++ + K + I D+ Q L + P+I+V
Sbjct: 56 PNIQAIVIAPTRELAIQVSEELYKIGQ--DKRAKVLPIYGGQDIGRQIRALKKNPNIIVG 113
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H+ +T+ L +++ V++DEAD + + G+ DD++++L +P +Q +L SAT+
Sbjct: 114 TPGRLLDHINRRTIRL-NNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTLLFSATM 172
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLL-----KLNL 264
+ + + P +K++ + VS + +++ QE +K L LL +L +
Sbjct: 173 PAPIKRIAERFMTEPEHVKVKAKEMT-VSNIQQFYLEVQERKKFDTLTRLLDIQSPELAI 231
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
V G+T V+ + + L+ Y + ++ +L R A+ +F +G +V++A+D
Sbjct: 232 VFGRTKRRVDELAEALNLRGYAAEG------IHGDLTQAKRMVALRKFKEGAIEVLVATD 285
Query: 325 EKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384
A RG+D V++V NFD P D + Y+HR GRT R
Sbjct: 286 VAA-----------------------RGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAG 322
Query: 385 NQGTALSFVSLREQDLMNDGTALSFVSLREQDLMND 420
G A++F++ RE+ ++ A+ + R+ D M +
Sbjct: 323 KTGMAMTFITPREKSMLR---AIEQTTKRKMDRMKE 355
>gi|56965701|ref|YP_177435.1| ATP-dependent RNA helicase [Bacillus clausii KSM-K16]
gi|56911947|dbj|BAD66474.1| ATP-dependent RNA helicase [Bacillus clausii KSM-K16]
Length = 493
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 117/378 (30%), Positives = 196/378 (51%), Gaps = 34/378 (8%)
Query: 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIIN 82
F L +QA+ +G+ E T IQ+ I L+L KDV+ +A+TG+GKTGAF IP++ +I +
Sbjct: 7 FGLDASVVQAVTNIGFTEATPIQQETIELVLAGKDVIGQAQTGTGKTGAFGIPLVNRIDS 66
Query: 83 LKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVE 142
Q LVL+P++EL NQ+ + +++ + V+ + D Q L +
Sbjct: 67 SNPLVQ-----GLVLAPTRELANQVEQALRQFGR--VKGVRTTVVYGGEDFGKQIRSLKQ 119
Query: 143 RPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPK-LYQ 201
RP I+VATP R L H++ KT+ L+ S+E V++DEAD + + G+ +D++ +L P+ Q
Sbjct: 120 RPHIIVATPGRLLDHMRRKTIRLE-SIETVVLDEADEMLNMGFIEDIETILAETPQETRQ 178
Query: 202 AILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLK 261
+L SAT+ + + SL ++NP + ++ + + +A I E EK +L L+
Sbjct: 179 TLLFSATMPKRMESLASKFMKNPTRIAVKAKEVT-MENIAQQFIEVHEREKFDVLCRLID 237
Query: 262 LNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVII 321
L +I+F T + +L L + L+ +L R + +F +GL DV++
Sbjct: 238 LETPD-LSIVFGRTKRRVDELAEALIKRGYRAEGLHGDLNQAKRNSVLRKFKEGLIDVLV 296
Query: 322 ASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTA 381
A+D A RG+D V++V NFD P D + Y+HR GRT
Sbjct: 297 ATDVAA-----------------------RGLDISGVTHVFNFDLPQDPESYVHRIGRTG 333
Query: 382 RGKNQGTALSFVSLREQD 399
R G A++ + E++
Sbjct: 334 RAGRSGIAITLATKPERE 351
>gi|86358753|ref|YP_470645.1| ATP-dependent RNA helicase [Rhizobium etli CFN 42]
gi|86282855|gb|ABC91918.1| ATP-dependent RNA helicase protein [Rhizobium etli CFN 42]
Length = 560
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 116/384 (30%), Positives = 195/384 (50%), Gaps = 35/384 (9%)
Query: 20 PFTFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQK 79
P TLF +LG PT IQE+AIPL+L+ +D++ A+TG+GKT AF +P+I+K
Sbjct: 33 PIVATLF--------QLGIETPTPIQEQAIPLLLEGRDLIGLAQTGTGKTAAFGLPLIEK 84
Query: 80 IINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL 139
++ ++ + T+ L+L+P++EL NQ+ +N+++ K + V V ++ Q+
Sbjct: 85 LLADERRPDNRTTRTLILAPTRELVNQIAENLKKFIRKSPLRINVV--VGGVSINKQQLQ 142
Query: 140 LVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199
L + DI+VATP R L + + + L +++ +++DEAD + G+ D++ + K +PK
Sbjct: 143 LEKGTDILVATPGRLLDLVNRRAITL-TTVRYLVLDEADQMLDLGFVHDLRKIAKLVPKK 201
Query: 200 YQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTL 259
Q +L SAT+ + + L L +PV +++ P A + H + +++K +L
Sbjct: 202 RQTMLFSATMPKAIADLAGEYLVDPVKVEVTPPGKAADKVEQYVHFVGGKNDKTELLRKS 261
Query: 260 LKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDV 319
L N G+ I+F+ T KL +L+ S ++ R A+ F G
Sbjct: 262 LTEN-PDGRAIVFLRTKHGAEKLMKHLDNIGYSVASIHGNKSQGQRERALKAFRDGSIKT 320
Query: 320 IIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGR 379
+IA+D A RGID VS+V N+D P Y+HR GR
Sbjct: 321 LIATDVAA-----------------------RGIDIPAVSHVYNYDLPEVPDAYVHRIGR 357
Query: 380 TARGKNQGTALSFVSLREQDLMND 403
TAR G A++F + E L+ D
Sbjct: 358 TARAGRDGIAIAFCAPDEAKLLRD 381
>gi|315302253|ref|ZP_07873161.1| dead-box ATP-dependent rna helicase ydbr [Listeria ivanovii FSL
F6-596]
gi|313629376|gb|EFR97601.1| dead-box ATP-dependent rna helicase ydbr [Listeria ivanovii FSL
F6-596]
Length = 526
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 110/373 (29%), Positives = 200/373 (53%), Gaps = 43/373 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++++ ++G+ E T IQE+ IPL L KD++ +A+TG+GKT AF +PMI KI Q
Sbjct: 16 VKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHKIDQKSNNVQ- 74
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
AL+++P++EL Q+ + + +L+ + V+ + + D+S Q L + P IVV
Sbjct: 75 ----ALIIAPTRELAIQVSEELYKLS--YDKHVRVLAVYGGSDISRQIRSLKKNPQIVVG 128
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H+ +TL L ++E +++DEAD + + G+ DD++ +LK +P Q +L SAT+
Sbjct: 129 TPGRILDHINRRTLKL-DNVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLLFSATM 187
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLL-----KLNL 264
+ + + + +P +++++ + + + + + E EK +L LL +L +
Sbjct: 188 PDPIRRIGERFMHSPELIRIKAKEMTAL-LIEQFFVKVHEKEKFDVLSRLLDVQAPELAI 246
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
V G+T V+ + + ++ Y+ + ++ +L R + +F +G DV++A+D
Sbjct: 247 VFGRTKRRVDELSRALDMRGYVAEG------IHGDLTQAKRMSVLRKFKEGKIDVLVATD 300
Query: 325 EKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384
A RG+D V++V N+D P D + Y+HR GRT R
Sbjct: 301 VAA-----------------------RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG 337
Query: 385 NQGTALSFVSLRE 397
+G A++FV RE
Sbjct: 338 KEGMAITFVQPRE 350
>gi|422415356|ref|ZP_16492313.1| dead-box ATP-dependent rna helicase ydbr [Listeria innocua FSL
J1-023]
gi|313624489|gb|EFR94491.1| dead-box ATP-dependent rna helicase ydbr [Listeria innocua FSL
J1-023]
Length = 516
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 110/373 (29%), Positives = 200/373 (53%), Gaps = 43/373 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++++ ++G+ E T IQE+ IPL L KD++ +A+TG+GKT AF +PMI KI Q
Sbjct: 14 VKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHKIDQKNNNVQ- 72
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
AL+++P++EL Q+ + + +L+ + V+ + + D+S Q L + P IVV
Sbjct: 73 ----ALIIAPTRELAIQVSEELYKLS--YDKHVRVLAVYGGSDISRQIRSLKKNPQIVVG 126
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H+ +TL L ++E +++DEAD + + G+ DD++ +LK +P Q +L SAT+
Sbjct: 127 TPGRILDHINRRTLKL-DNVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLLFSATM 185
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLL-----KLNL 264
+ + + + +P +++++ + + + + + E EK +L LL +L +
Sbjct: 186 PDPIRRIGERFMHSPELIRIKAKEMTALL-IEQFFVKVHEKEKFDVLSRLLDVQAPELAI 244
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
V G+T V+ + + ++ Y+ + ++ +L R + +F +G DV++A+D
Sbjct: 245 VFGRTKRRVDELSRALDMRGYVAEG------IHGDLTQAKRMSVLRKFKEGKIDVLVATD 298
Query: 325 EKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384
A RG+D V++V N+D P D + Y+HR GRT R
Sbjct: 299 VAA-----------------------RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG 335
Query: 385 NQGTALSFVSLRE 397
+G A++FV RE
Sbjct: 336 KEGMAITFVQPRE 348
>gi|221211662|ref|ZP_03584641.1| ATP-dependent RNA helicase RhlE [Burkholderia multivorans CGD1]
gi|221169023|gb|EEE01491.1| ATP-dependent RNA helicase RhlE [Burkholderia multivorans CGD1]
Length = 495
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 117/386 (30%), Positives = 200/386 (51%), Gaps = 35/386 (9%)
Query: 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII- 81
F L L+AIA+ G+ PT IQ +AIP++L +DV+ A+TG+GKT +F++P+IQ+++
Sbjct: 16 FGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQRLLP 75
Query: 82 --NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL 139
N + +AL+L+P++EL +Q+ N+ ++ + VD++ Q
Sbjct: 76 QANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTP--LRSAVVFGGVDMNPQMAE 133
Query: 140 LVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199
L +I++ATP R L H++ KT +L ++I+++DEAD + G+ D++ +L LPK
Sbjct: 134 LRRGVEILIATPGRLLDHVQQKTANL-GQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192
Query: 200 YQAILASATLSEDVLSLKHLILRNPVILKL--EEPAIAPVSQLAHYHILAQEDEKATILY 257
Q +L SAT S ++ L LRNP +++ A V+Q+ + +A+ D++A ++
Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYD--VAEGDKQAAVVQ 250
Query: 258 TLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLY 317
L L Q I+F N+ +L LE+ + ++ + R A+ F +G
Sbjct: 251 LLRDRGLKQ--VIVFCNSKIGASRLARQLERDGVVASAIHGDKSQLERMQALDAFKRGEI 308
Query: 318 DVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRA 377
+ ++A+D A RG+D + VINFD P + + Y+HR
Sbjct: 309 EALVATDVAA-----------------------RGLDIAELPAVINFDLPFNAEDYVHRI 345
Query: 378 GRTARGKNQGTALSFVSLREQDLMND 403
GRT R G ALS S E+ + D
Sbjct: 346 GRTGRAGATGDALSLCSPNERKQLAD 371
>gi|218131071|ref|ZP_03459875.1| hypothetical protein BACEGG_02675 [Bacteroides eggerthii DSM 20697]
gi|217986775|gb|EEC53108.1| DEAD/DEAH box helicase [Bacteroides eggerthii DSM 20697]
Length = 428
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 118/373 (31%), Positives = 203/373 (54%), Gaps = 36/373 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+ + + E T IQE++IP+IL+ +D++ A+TG+GKT A+ +P++ K L +
Sbjct: 13 LEALDAMRFDECTPIQEQSIPVILEGRDLIAVAQTGTGKTAAYLLPVLNK---LSEGGHP 69
Query: 90 QET-KALVLSPSKELCNQLHKNIQELT--MKCSRDVKCVDISEQVDVSVQEPLLVERPDI 146
+++ +V++P++EL Q+ + ++ + M S V ++ V Q+ L D+
Sbjct: 70 EDSINCIVMAPTRELAQQIDQQMEGFSYFMPVS-SVAVYGGNDGVLFEQQKRGLTLGADV 128
Query: 147 VVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
V+ATP R +AHL +DL S + I+DEAD + G+ DD+ ++KFLPK Q I+ S
Sbjct: 129 VIATPGRLIAHLSLGYVDL-SRVSYFILDEADRMLDMGFYDDIMQIVKFLPKERQTIMFS 187
Query: 207 ATLSEDVLSLKHLILRNPVILKLEEPAIA-PVSQLAHYHILAQEDEKATILYTLLKLNLV 265
AT+ + L IL NP +KL A++ P ++ + E++K I+ +L
Sbjct: 188 ATMPAKIQQLAKSILNNPAEVKL---AVSKPAEKIVQAAYVCYENQKLGIIRSLFAEQTP 244
Query: 266 QGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE 325
+ + IIF ++ K ++ L+Q K++ ++S+L R +Y+F G ++++A+D
Sbjct: 245 E-RVIIFASSKLKVKEVTKALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRINILVATDI 303
Query: 326 KALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKN 385
V+RGID + VIN+D P D + Y+HR GRTAR N
Sbjct: 304 -----------------------VARGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANN 340
Query: 386 QGTALSFVSLREQ 398
G AL+FV+ +EQ
Sbjct: 341 DGVALTFVNEKEQ 353
>gi|126175663|ref|YP_001051812.1| DEAD/DEAH box helicase [Shewanella baltica OS155]
gi|125998868|gb|ABN62943.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
Length = 526
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 119/386 (30%), Positives = 197/386 (51%), Gaps = 30/386 (7%)
Query: 19 LPFTFTLFCIP-LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMI 77
+ FT P L+A+A+ G+ P+ IQ +AIP +LQ KDV+ A+TG+GKT F +PM+
Sbjct: 12 MSFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPML 71
Query: 78 QKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQE 137
+ +++ AQ + +ALVL+P++EL Q+ ++++ T + ++ I V ++ Q
Sbjct: 72 E-LLSKGNRAQAGQVRALVLTPTRELAAQVAESVE--TYGKNLPLRSAVIFGGVPINPQI 128
Query: 138 PLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLP 197
L D++VATP R + K + S LEI+++DEAD + G+ D++ +L LP
Sbjct: 129 AKLRHGVDVLVATPGRLMDLYNQKAVKF-SQLEILVLDEADRMLDMGFIRDIRKILAILP 187
Query: 198 KLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILY 257
K Q ++ SAT S+++ L ++ NPV + + P A + + + + +K+ +L
Sbjct: 188 KQRQNLMFSATFSDEIRELAKGLVNNPVEISV-TPRNAAATTVKQWVCPVDKSQKSALLI 246
Query: 258 TLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLY 317
L+K N Q + ++F T +L LE I ++ AR A+ F G
Sbjct: 247 QLIKQNDWQ-QVLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQA 305
Query: 318 DVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRA 377
V++A+D A RG+D + V+NFD P + Y+HR
Sbjct: 306 RVLVATDIAA-----------------------RGLDIDQLPQVVNFDLPNVPEDYVHRI 342
Query: 378 GRTARGKNQGTALSFVSLREQDLMND 403
GRT R G A+S VS E L+ND
Sbjct: 343 GRTGRAGASGQAVSLVSNEEIKLLND 368
>gi|420416460|ref|ZP_14915569.1| ATP-dependent RNA helicase [Helicobacter pylori NQ4044]
gi|393036889|gb|EJB37927.1| ATP-dependent RNA helicase [Helicobacter pylori NQ4044]
Length = 491
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 110/365 (30%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQERAIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQERAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPK-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDV---- 316
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 317 -------------------ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|409051554|gb|EKM61030.1| hypothetical protein PHACADRAFT_24252 [Phanerochaete carnosa
HHB-10118-sp]
Length = 793
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 111/370 (30%), Positives = 195/370 (52%), Gaps = 34/370 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AIA L + +PT IQ IP+ L KD++ A TGSGKT AF IPMI++++ ++ +
Sbjct: 206 LKAIASLNFTKPTPIQAATIPVALLGKDIVGNAVTGSGKTAAFMIPMIERLMYRERGKKA 265
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T+ +VL P++EL Q ++ +L D++ + + + QE L RPDI++A
Sbjct: 266 AATRCMVLVPTRELGVQCYEVGTKLAAHT--DIRFCLVVGGLSLKSQEVALRTRPDIIIA 323
Query: 150 TPARALAHLKAK---TLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
TP R + H++ TLD +L+I+++DEAD + S G++D++ ++K P Q +L S
Sbjct: 324 TPGRLIDHIRNTPTFTLD---TLDILVLDEADRMLSEGFQDELAEIIKSCPVSRQTMLFS 380
Query: 207 ATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHIL--AQEDEKATILYTLLKLNL 264
AT+++ V L + L PV L ++ L + + ++EDE++ +L +L K
Sbjct: 381 ATMTDSVDELVRMSLNQPVRLFVDPKRTTARGLLQEFVRVRASKEDERSALLVSLCKRTF 440
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
+G +IF + +++++ + L+ +L + R A+ F +G D ++A+D
Sbjct: 441 -KGGVLIFFRSKKLAHQMRIVFGLLGMKASELHGDLTQEQRLQALQAFREGSVDYLMATD 499
Query: 325 EKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384
SRG+D + + VIN+D P + Y+HR GRTAR
Sbjct: 500 L-----------------------ASRGLDIKGIDTVINYDMPGQVAQYLHRVGRTARAG 536
Query: 385 NQGTALSFVS 394
+G +++ V
Sbjct: 537 KKGRSVTLVG 546
>gi|420451587|ref|ZP_14950439.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-6]
gi|393070445|gb|EJB71235.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-6]
Length = 491
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 191/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A ++ LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNADITQRFYVI-NEHERAEVIMRLLDTQAPE-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|221199585|ref|ZP_03572629.1| dead/deah box helicase [Burkholderia multivorans CGD2M]
gi|221205515|ref|ZP_03578530.1| dead/deah box helicase [Burkholderia multivorans CGD2]
gi|221174353|gb|EEE06785.1| dead/deah box helicase [Burkholderia multivorans CGD2]
gi|221180870|gb|EEE13273.1| dead/deah box helicase [Burkholderia multivorans CGD2M]
Length = 487
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 117/386 (30%), Positives = 200/386 (51%), Gaps = 35/386 (9%)
Query: 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII- 81
F L L+AIA+ G+ PT IQ +AIP++L +DV+ A+TG+GKT +F++P+IQ+++
Sbjct: 16 FGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQRLLP 75
Query: 82 --NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL 139
N + +AL+L+P++EL +Q+ N+ ++ + VD++ Q
Sbjct: 76 QANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTP--LRSAVVFGGVDMNPQMAE 133
Query: 140 LVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199
L +I++ATP R L H++ KT +L ++I+++DEAD + G+ D++ +L LPK
Sbjct: 134 LRRGVEILIATPGRLLDHVQQKTANL-GQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192
Query: 200 YQAILASATLSEDVLSLKHLILRNPVILKL--EEPAIAPVSQLAHYHILAQEDEKATILY 257
Q +L SAT S ++ L LRNP +++ A V+Q+ + +A+ D++A ++
Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYD--VAEGDKQAAVVQ 250
Query: 258 TLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLY 317
L L Q I+F N+ +L LE+ + ++ + R A+ F +G
Sbjct: 251 LLRDRGLKQ--VIVFCNSKIGASRLARQLERDGVVASAIHGDKSQLERMQALDAFKRGEI 308
Query: 318 DVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRA 377
+ ++A+D A RG+D + VINFD P + + Y+HR
Sbjct: 309 EALVATDVAA-----------------------RGLDIAELPAVINFDLPFNAEDYVHRI 345
Query: 378 GRTARGKNQGTALSFVSLREQDLMND 403
GRT R G ALS S E+ + D
Sbjct: 346 GRTGRAGATGDALSLCSPNERKQLAD 371
>gi|423347930|ref|ZP_17325615.1| hypothetical protein HMPREF1060_03287 [Parabacteroides merdae
CL03T12C32]
gi|409215416|gb|EKN08417.1| hypothetical protein HMPREF1060_03287 [Parabacteroides merdae
CL03T12C32]
Length = 427
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 119/372 (31%), Positives = 194/372 (52%), Gaps = 33/372 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L + + +LE T +QE IP+IL+ KD++ A+TG+GKT A+ +P+I ++ A
Sbjct: 13 LDGLDAMNFLETTPVQELTIPVILEGKDIIACAQTGTGKTAAYVLPVINELSKGLHPANA 72
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCS-RDVKCVDISEQVDVSVQEPLLVERPDIVV 148
A++++P++EL Q+ + I+ T V ++ + Q+ + DIV+
Sbjct: 73 --INAIIMAPTRELAQQIDQQIEGFTYFVPVSAVAVYGGTDGIAWEQQKRGMEMGADIVI 130
Query: 149 ATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
ATP R L+H+K T+DL S + ++DEAD + G+ DD+ V K LP Q I+ SAT
Sbjct: 131 ATPGRLLSHIKLGTVDL-SQVSFFVLDEADRMLDMGFYDDIMQVYKLLPATCQTIMFSAT 189
Query: 209 LSEDVLSLKHLILRNPVILKLEEPAIA-PVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
+ + +L IL+NP +K+ AI+ P + + + +K IL L + Q
Sbjct: 190 MPPKIRTLAQTILKNPEEVKI---AISRPPETIMQTAYVCYDMQKLRILEDLFSKSRPQ- 245
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
+ IIF ++ K +L L++ K + ++S+L R + +F G D+++A+D
Sbjct: 246 RVIIFSSSKMKVKELASTLKRMKFNVAAMHSDLEQSQREEVMKEFKNGRIDILVATDV-- 303
Query: 328 LETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKN-Q 386
VSRGID + VINFD P D + Y+HR GRTARG N +
Sbjct: 304 ---------------------VSRGIDINDIKLVINFDIPHDPEDYVHRIGRTARGTNGE 342
Query: 387 GTALSFVSLREQ 398
G A++F+S EQ
Sbjct: 343 GLAITFISTEEQ 354
>gi|398334959|ref|ZP_10519664.1| ATP-dependent RNA helicase [Leptospira kmetyi serovar Malaysia str.
Bejo-Iso9]
Length = 531
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 120/368 (32%), Positives = 194/368 (52%), Gaps = 44/368 (11%)
Query: 32 AIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQE 91
AIA++G+ E + IQ AIP+IL+ KD++ A+TG+GKT AFAIP I+ + + +
Sbjct: 23 AIAEMGFEEASPIQSEAIPVILKGKDIIGHAQTGTGKTAAFAIPTIELL-----EVESKH 77
Query: 92 TKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATP 151
+AL+L P++EL Q+ + ++L MK + + V + ++ Q L + P IV+ATP
Sbjct: 78 LQALILCPTRELVIQVSEQFRKL-MKYKGNFEVVPVYGGQEIDRQLRALRKNPQIVIATP 136
Query: 152 ARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSE 211
R + H++ ++ L+ ++IVI+DEAD + G+ +DM+ +LK P Q I+ SAT+++
Sbjct: 137 GRMMDHMRRGSIRLED-IKIVILDEADEMLDMGFREDMEFILKDTPADRQTIMFSATMTD 195
Query: 212 DVLSLKHLILRNPVILKLEEPAI-APVSQLAHYHILAQEDEKATIL-----YTLLKLNLV 265
D+L+L +NP I+ + + AP + +Y I QE+ K L Y +KL LV
Sbjct: 196 DILTLMKRFQKNPQIIDVTHQKLSAPKIEQIYYEI--QENAKGEALARLIEYRNVKLALV 253
Query: 266 QGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE 325
T V+TV + K + Y + L+ +L K R + F G ++++A+D
Sbjct: 254 FCNTKAQVDTVVELLKSRGYFAE------ALHGDLNQKQRDKVMNGFRNGSIEILVATDV 307
Query: 326 KALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKN 385
RGID V V N+D P D + Y+HR GRT R
Sbjct: 308 -----------------------AGRGIDVNNVEAVFNYDLPRDGEDYVHRIGRTGRAGK 344
Query: 386 QGTALSFV 393
+G A SF+
Sbjct: 345 KGIAFSFI 352
>gi|424902637|ref|ZP_18326153.1| ATP-dependent RNA helicase 2 [Burkholderia thailandensis MSMB43]
gi|390933012|gb|EIP90412.1| ATP-dependent RNA helicase 2 [Burkholderia thailandensis MSMB43]
Length = 482
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 113/384 (29%), Positives = 198/384 (51%), Gaps = 31/384 (8%)
Query: 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII- 81
F L L+AIA+ G+ PT IQ +AIP++L +DV+ A+TG+GKT +F++P+IQ+++
Sbjct: 16 FGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQRLLP 75
Query: 82 --NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL 139
N + +AL+L+P++EL +Q+ N+ ++ + VD++ Q
Sbjct: 76 QANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTP--LRSAVVFGGVDMNPQMAE 133
Query: 140 LVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199
L +I++ATP R L H++ KT +L ++I+++DEAD + G+ D++ +L LPK
Sbjct: 134 LRRGVEILIATPGRLLDHVQQKTANL-GQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192
Query: 200 YQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTL 259
Q +L SAT S ++ L LR+P +++ A + + +A+ D++A ++ +
Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRDPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKLI 252
Query: 260 LKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDV 319
+L Q I+F N+ +L +E+ I ++ + R A+ F +G +
Sbjct: 253 RDRSLKQ--VIVFCNSKIGASRLARQIERDGIVAAAIHGDRSQSERMQALDAFKRGEIEA 310
Query: 320 IIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGR 379
++A+D A RG+D + VINFD P + + Y+HR GR
Sbjct: 311 LVATDVAA-----------------------RGLDIVELPAVINFDLPFNAEDYVHRIGR 347
Query: 380 TARGKNQGTALSFVSLREQDLMND 403
T R G ALS S E+ + D
Sbjct: 348 TGRAGASGDALSLCSPNERKQLAD 371
>gi|160874026|ref|YP_001553342.1| DEAD/DEAH box helicase [Shewanella baltica OS195]
gi|160859548|gb|ABX48082.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
Length = 525
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 119/386 (30%), Positives = 197/386 (51%), Gaps = 30/386 (7%)
Query: 19 LPFTFTLFCIP-LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMI 77
+ FT P L+A+A+ G+ P+ IQ +AIP +LQ KDV+ A+TG+GKT F +PM+
Sbjct: 12 MSFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPML 71
Query: 78 QKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQE 137
+ +++ AQ + +ALVL+P++EL Q+ ++++ T + ++ I V ++ Q
Sbjct: 72 E-LLSKGNRAQAGQVRALVLTPTRELAAQVAESVE--TYGKNLPLRSAVIFGGVPINPQI 128
Query: 138 PLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLP 197
L D++VATP R + K + S LEI+++DEAD + G+ D++ +L LP
Sbjct: 129 AKLRHGVDVLVATPGRLMDLYNQKAVKF-SQLEILVLDEADRMLDMGFIRDIRKILAILP 187
Query: 198 KLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILY 257
K Q ++ SAT S+++ L ++ NPV + + P A + + + + +K+ +L
Sbjct: 188 KQRQNLMFSATFSDEIRELAKGLVNNPVEISV-TPRNAAATTVKQWVCPVDKSQKSALLI 246
Query: 258 TLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLY 317
L+K N Q + ++F T +L LE I ++ AR A+ F G
Sbjct: 247 QLIKQNDWQ-QVLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQA 305
Query: 318 DVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRA 377
V++A+D A RG+D + V+NFD P + Y+HR
Sbjct: 306 RVLVATDIAA-----------------------RGLDIDQLPQVVNFDLPNVPEDYVHRI 342
Query: 378 GRTARGKNQGTALSFVSLREQDLMND 403
GRT R G A+S VS E L+ND
Sbjct: 343 GRTGRAGASGQAVSLVSNEEIKLLND 368
>gi|421477961|ref|ZP_15925746.1| DEAD/DEAH box helicase [Burkholderia multivorans CF2]
gi|400225606|gb|EJO55753.1| DEAD/DEAH box helicase [Burkholderia multivorans CF2]
Length = 487
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 117/386 (30%), Positives = 200/386 (51%), Gaps = 35/386 (9%)
Query: 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII- 81
F L L+AIA+ G+ PT IQ +AIP++L +DV+ A+TG+GKT +F++P+IQ+++
Sbjct: 16 FGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQRLLP 75
Query: 82 --NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL 139
N + +AL+L+P++EL +Q+ N+ ++ + VD++ Q
Sbjct: 76 QANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTP--LRSAVVFGGVDMNPQMAE 133
Query: 140 LVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199
L +I++ATP R L H++ KT +L ++I+++DEAD + G+ D++ +L LPK
Sbjct: 134 LRRGVEILIATPGRLLDHVQQKTANL-GQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192
Query: 200 YQAILASATLSEDVLSLKHLILRNPVILKL--EEPAIAPVSQLAHYHILAQEDEKATILY 257
Q +L SAT S ++ L LRNP +++ A V+Q+ + +A+ D++A ++
Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYD--VAEGDKQAAVVQ 250
Query: 258 TLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLY 317
L L Q I+F N+ +L LE+ + ++ + R A+ F +G
Sbjct: 251 LLRDRGLKQ--VIVFCNSKIGASRLARQLERDGVVASAIHGDKSQLERMQALDAFKRGEI 308
Query: 318 DVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRA 377
+ ++A+D A RG+D + VINFD P + + Y+HR
Sbjct: 309 EALVATDVAA-----------------------RGLDIAELPAVINFDLPFNAEDYVHRI 345
Query: 378 GRTARGKNQGTALSFVSLREQDLMND 403
GRT R G ALS S E+ + D
Sbjct: 346 GRTGRAGATGDALSLCSPNERKQLAD 371
>gi|209695626|ref|YP_002263555.1| ATP-dependent RNA helicase [Aliivibrio salmonicida LFI1238]
gi|208009578|emb|CAQ79874.1| putative ATP-dependent RNA helicase [Aliivibrio salmonicida
LFI1238]
Length = 398
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 116/377 (30%), Positives = 198/377 (52%), Gaps = 29/377 (7%)
Query: 19 LPFTFTLFCIP-LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMI 77
+PF+ P L+AI +LG+ PT IQE+AIP+ L K+++ A+TG+GKT +F +P++
Sbjct: 1 MPFSNLGLSNPILKAINELGYKAPTPIQEKAIPVALTGKNLIAAAQTGTGKTASFVLPIL 60
Query: 78 QKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQE 137
Q + + + + +AL+L+P++EL Q+ NI + + D+ + + VD Q+
Sbjct: 61 QMLSEEQTKVRAKRIRALILTPTRELAVQVEDNISKYSKHL--DLTSLAMYGGVDYKEQK 118
Query: 138 PLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLP 197
L+E DI+VATP R L + + ++I+++DEAD + G+ +D+ +++ LP
Sbjct: 119 QRLIEGVDILVATPGRLLDMYTQRAVHF-DEIDILVLDEADRMLDMGFIEDINKIIERLP 177
Query: 198 KLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILY 257
Q +L SATLSE V +L + NP+ + +E + A ++ + I +D+K+ ++
Sbjct: 178 LERQNLLFSATLSEQVRALARTAINNPIEITIERNSNAE-PKIDQWLITVDKDKKSALIS 236
Query: 258 TLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLY 317
L+K N + +IF+ T KL LE+ I+ +S AR + F +G
Sbjct: 237 HLIKEN-DWDQALIFIETKHGAAKLVGQLEKRGITAEAFHSGRSQDARSKVLNDFKEGRL 295
Query: 318 DVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRA 377
++A+ A RGID ++ VIN+D P + Y+HR
Sbjct: 296 KYLVATGIAA-----------------------RGIDIDELTRVINYDLPFPAEDYVHRI 332
Query: 378 GRTARGKNQGTALSFVS 394
GRT R + G A+SFVS
Sbjct: 333 GRTGRAGSSGEAISFVS 349
>gi|405382160|ref|ZP_11035982.1| DNA/RNA helicase, superfamily II [Rhizobium sp. CF142]
gi|397321648|gb|EJJ26064.1| DNA/RNA helicase, superfamily II [Rhizobium sp. CF142]
Length = 555
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 115/384 (29%), Positives = 191/384 (49%), Gaps = 35/384 (9%)
Query: 20 PFTFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQK 79
P TLF +LG PT IQE+AIPL++Q +D++ A+TG+GKT AF +P+I++
Sbjct: 12 PIVATLF--------QLGIETPTPIQEQAIPLLIQGRDLIGLAQTGTGKTAAFGLPLIER 63
Query: 80 IINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL 139
++ ++ + + L+L+P++EL NQ+ ++++ K + V V ++ Q+
Sbjct: 64 LLKEEKRPDNRSVRTLILAPTRELVNQIADSLRKFIRKSPLRINVV--VGGVSINKQQLQ 121
Query: 140 LVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199
L DI+VATP R L + L +++ +++DEAD + G+ D++ + K PK
Sbjct: 122 LERGSDILVATPGRLLDLCNRNAITL-TAVRYLVLDEADQMLDLGFVHDLRKIAKMAPKR 180
Query: 200 YQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTL 259
Q +L SAT+ + + L L +PV +++ P A + H + +++K +L
Sbjct: 181 RQTMLFSATMPKAIADLAGDYLTDPVTVQVTPPGKAADKVEQYVHFVPGKNDKTVLLKKS 240
Query: 260 LKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDV 319
L N G+ I+F+ T KL +LEQ S ++ R A+ F G
Sbjct: 241 LTEN-PDGRAIVFLRTKHGAEKLAKHLEQVGYSVASIHGNKSQGQRERALKGFRDGAIKT 299
Query: 320 IIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGR 379
+IA+D A RGID VS+V N+D P + Y+HR GR
Sbjct: 300 LIATDVAA-----------------------RGIDIPAVSHVFNYDLPEVAEAYVHRIGR 336
Query: 380 TARGKNQGTALSFVSLREQDLMND 403
TAR G A++F + E L+ D
Sbjct: 337 TARAGRDGIAIAFCAPDEARLLRD 360
>gi|420424845|ref|ZP_14923909.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-5]
gi|393043432|gb|EJB44436.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-5]
Length = 491
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 110/365 (30%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL V K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNADITQRFYVI-NEHERAEAIMRLLDTQ-VPEKS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|66812836|ref|XP_640597.1| hypothetical protein DDB_G0281711 [Dictyostelium discoideum AX4]
gi|74897154|sp|Q54TJ4.1|DDX27_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx27; AltName:
Full=DEAD box protein 27
gi|60468614|gb|EAL66617.1| hypothetical protein DDB_G0281711 [Dictyostelium discoideum AX4]
Length = 783
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 121/402 (30%), Positives = 209/402 (51%), Gaps = 49/402 (12%)
Query: 10 PTLIQVYFELPFTFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKT 69
PT +++ P L+A+ KLG+ +PT IQ +AIPL L KD+L A TGSGKT
Sbjct: 190 PTFEELHLSRPL--------LKAVQKLGFSQPTPIQAKAIPLALNGKDILASASTGSGKT 241
Query: 70 GAFAIPMIQKIINLKQTAQVQETKALVLSPSKEL---CNQLHKNIQELTMKCSRDVKCVD 126
AF +P+++++ L + ++ + + L+L P++EL C + +N+ + + S C+
Sbjct: 242 AAFLLPVLERL--LFRDSEYRAIRVLILLPTRELALQCQSVMENLAQFSNITS----CL- 294
Query: 127 ISEQVDVSVQEPLLVERPDIVVATPARALAH-LKAKTLDLKSSLEIVIIDEADLVFSFGY 185
I + QE L + PD+V+ATP R + H L A + L LEI+I+DEAD + G+
Sbjct: 295 IVGGLSNKAQEVELRKSPDVVIATPGRLIDHLLNAHGIGL-DDLEILILDEADRLLDMGF 353
Query: 186 EDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHI 245
+D++ +++ P Q +L SATL+++V +L L L+ P+ ++++ A+ V+
Sbjct: 354 KDEINKIVESCPTNRQTMLFSATLNDEVKTLAKLSLQQPIRVQVD--ALMQVTSTLEQEF 411
Query: 246 LAQE----DEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELP 301
+ + ++ IL +L QG TIIF + + ++L++ + L+ L
Sbjct: 412 VKIKPQHLSDRPAILLSLCTRVFNQGGTIIFCRSKKEVHRLRIIFGLSDLKAAELHGNLS 471
Query: 302 AKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNV 361
+ R ++ QF G + ++ASD SRG+D V V
Sbjct: 472 QEQRFDSLQQFRDGQVNYLLASDV-----------------------ASRGLDIIGVKTV 508
Query: 362 INFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND 403
IN++ P ++ YIHR GRTAR G + SF++ ++ L+ D
Sbjct: 509 INYNMPNNMANYIHRVGRTARAGMDGKSCSFITDNDRKLLKD 550
>gi|421467479|ref|ZP_15916098.1| DEAD/DEAH box helicase [Burkholderia multivorans ATCC BAA-247]
gi|400233671|gb|EJO63196.1| DEAD/DEAH box helicase [Burkholderia multivorans ATCC BAA-247]
Length = 487
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 117/386 (30%), Positives = 200/386 (51%), Gaps = 35/386 (9%)
Query: 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII- 81
F L L+AIA+ G+ PT IQ +AIP++L +DV+ A+TG+GKT +F++P+IQ+++
Sbjct: 16 FGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQRLLP 75
Query: 82 --NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL 139
N + +AL+L+P++EL +Q+ N+ ++ + VD++ Q
Sbjct: 76 QANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTP--LRSAVVFGGVDMNPQMAE 133
Query: 140 LVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199
L +I++ATP R L H++ KT +L ++I+++DEAD + G+ D++ +L LPK
Sbjct: 134 LRRGVEILIATPGRLLDHVQQKTANL-GQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192
Query: 200 YQAILASATLSEDVLSLKHLILRNPVILKL--EEPAIAPVSQLAHYHILAQEDEKATILY 257
Q +L SAT S ++ L LRNP +++ A V+Q+ + +A+ D++A ++
Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYD--VAEGDKQAAVVQ 250
Query: 258 TLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLY 317
L L Q I+F N+ +L LE+ + ++ + R A+ F +G
Sbjct: 251 LLRDRGLKQ--VIVFCNSKIGASRLARQLERDGVVASAIHGDKSQLERMQALDAFKRGEI 308
Query: 318 DVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRA 377
+ ++A+D A RG+D + VINFD P + + Y+HR
Sbjct: 309 EALVATDVAA-----------------------RGLDIAELPAVINFDLPFNAEDYVHRI 345
Query: 378 GRTARGKNQGTALSFVSLREQDLMND 403
GRT R G ALS S E+ + D
Sbjct: 346 GRTGRAGATGDALSLCSPNERKQLAD 371
>gi|118579192|ref|YP_900442.1| DEAD/DEAH box helicase [Pelobacter propionicus DSM 2379]
gi|118501902|gb|ABK98384.1| DEAD/DEAH box helicase domain protein [Pelobacter propionicus DSM
2379]
Length = 447
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 115/363 (31%), Positives = 187/363 (51%), Gaps = 33/363 (9%)
Query: 32 AIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQE 91
I+ G+ PT IQ+++IP ++ DV+ A+TG+GKT AFA+P++ +++ KQ
Sbjct: 15 GISAAGYSTPTPIQKQSIPPVMAGSDVMGLAQTGTGKTAAFALPILHRLMEGKQGT---- 70
Query: 92 TKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATP 151
+AL+++P++EL Q++ +I +L K +K + + V V+ Q L DIVVA P
Sbjct: 71 VRALIIAPTRELAEQINTSIAQLGAKTG--LKSMTVYGGVSVNPQIERLRRGVDIVVACP 128
Query: 152 ARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSE 211
R L H+ T+DL S +E++++DEAD +F G+ D++ VLK LP Q +L SAT+ +
Sbjct: 129 GRLLDHINQGTIDL-SRIEVLVLDEADQMFDMGFLPDIRRVLKHLPAQRQTLLFSATMPD 187
Query: 212 DVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTII 271
D+ L ILR P+ ++ + AP ++H + K +L LL+ + +I
Sbjct: 188 DIRRLASDILRQPITVQAG--STAPPVTVSHALYPVSQHLKTPLLLELLRHTDTE-SVLI 244
Query: 272 FVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETP 331
F T + +L LE+ L L R A+ F G + +++A+D A
Sbjct: 245 FARTKHRAKRLGEQLEKAGYRATSLQGNLSQNRRQAALDGFRDGTFQIMVATDIAA---- 300
Query: 332 QINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALS 391
RGID +S+V+N+D P + YIHR GRT R G A +
Sbjct: 301 -------------------RGIDVSQISHVVNYDIPDTAEAYIHRIGRTGRAARSGDAFT 341
Query: 392 FVS 394
V+
Sbjct: 342 LVT 344
>gi|422808949|ref|ZP_16857360.1| Cold-shock DEAD-box protein A [Listeria monocytogenes FSL J1-208]
gi|378752563|gb|EHY63148.1| Cold-shock DEAD-box protein A [Listeria monocytogenes FSL J1-208]
Length = 516
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 110/373 (29%), Positives = 199/373 (53%), Gaps = 43/373 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++++ ++G+ E T IQE+ IPL L KD++ +A+TG+GKT AF +PMI KI Q
Sbjct: 14 VKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHKIDQKSNNVQ- 72
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
AL+++P++EL Q+ + + +L+ + V+ + + D+S Q L + P IVV
Sbjct: 73 ----ALIIAPTRELAIQVSEELYKLS--YDKHVRVLAVYGGSDISRQIRSLKKNPQIVVG 126
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H+ +TL L +E +++DEAD + + G+ DD++ +LK +P Q +L SAT+
Sbjct: 127 TPGRILDHINRRTLKL-DHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLLFSATM 185
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLL-----KLNL 264
+ + + + +P +++++ + + + + + E EK +L LL +L +
Sbjct: 186 PDPIRRIGERFMHSPELIRIKAKEMTALL-IEQFFVKVHEKEKFDVLSRLLDVQAPELAI 244
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
V G+T V+ + + ++ Y+ + ++ +L R + +F +G DV++A+D
Sbjct: 245 VFGRTKRRVDELSRALDMRGYVAEG------IHGDLTQAKRMSVLRKFKEGKIDVLVATD 298
Query: 325 EKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384
A RG+D V++V N+D P D + Y+HR GRT R
Sbjct: 299 VAA-----------------------RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG 335
Query: 385 NQGTALSFVSLRE 397
+G A++FV RE
Sbjct: 336 KEGMAITFVQPRE 348
>gi|157377161|ref|YP_001475761.1| DEAD/DEAH box helicase [Shewanella sediminis HAW-EB3]
gi|157319535|gb|ABV38633.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
HAW-EB3]
Length = 610
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 116/372 (31%), Positives = 192/372 (51%), Gaps = 32/372 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+ +LG+ +PT IQ +I ++ KD+L +A+TG+GKTGAFA+P++ I Q+
Sbjct: 18 LRALDELGYEKPTPIQAASIDPLMAGKDILGQAQTGTGKTGAFALPLLNSIDPNTNAPQI 77
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
LVL+P++EL Q+ + K + + + I + Q L P I+V
Sbjct: 78 -----LVLAPTRELAVQVAEAFGSYA-KFMKGLHVLPIYGGQSMHQQLNALRRGPQIIVG 131
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + H++ TL L+ SL+ +++DEAD + G+ DD++ +L+ PK Q L SAT+
Sbjct: 132 TPGRVMDHMRRGTLKLE-SLKAMVLDEADEMLKMGFIDDIEWILEHTPKQRQLALFSATM 190
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + + + L PV +K+ V + + + K L +L++ +G
Sbjct: 191 PEQIKRVANKYLSEPVHVKIAA-TTTTVETIEQRFVQVSQHNKLEALVRVLEVEKTEG-I 248
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
IIFV T + C +L LE ++ L+ ++ +AR AV Q +G D+IIA+D A
Sbjct: 249 IIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGTLDIIIATDVAA-- 306
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
RG+D + + +V+N+D P D + Y+HR GRT R G A
Sbjct: 307 ---------------------RGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMA 345
Query: 390 LSFVSLREQDLM 401
+ FV+ RE ++
Sbjct: 346 ILFVTHREMRML 357
>gi|442609095|ref|ZP_21023836.1| ATP-dependent RNA helicase VCA0768 [Pseudoalteromonas luteoviolacea
B = ATCC 29581]
gi|441749707|emb|CCQ09898.1| ATP-dependent RNA helicase VCA0768 [Pseudoalteromonas luteoviolacea
B = ATCC 29581]
Length = 409
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 123/380 (32%), Positives = 203/380 (53%), Gaps = 43/380 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L A++ LG+ +PT IQ AIP++L KD+L A TGSGKT AF +P++ +++ QT +
Sbjct: 13 LDALSSLGFEQPTPIQLDAIPVVLTGKDLLASAETGSGKTAAFLLPILNRLV---QTVER 69
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ALVL+P++EL Q+ K+ +EL K +++ V + ++ Q L + DIVVA
Sbjct: 70 GIPRALVLAPTRELAQQIVKHGEELAAKT--ELRFVLLQGGANIGPQCERLAQGVDIVVA 127
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HL +L L S++E V+ DEAD + G++D+++ + K LP Q++L SAT+
Sbjct: 128 TPGRLLDHLIKGSLSL-SAIETVVYDEADRLLDMGFKDEIQRIRKRLPTNPQSLLFSATI 186
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+ + +L +++L P+ + + A + ++ + E ++ Y + K N Q
Sbjct: 187 DDAIENLANVLLDKPIRISVAGTNKAATPIIQRFYAVDPEKKQKLAAYLIGKNNWRQ--V 244
Query: 270 IIFVNT---VDKCYKLKLYLEQF---KISTCVLNSELPAKARCHAVYQFNQGLYDVIIAS 323
++F T VD+ Y+++F + L+ + R A+ QF G V++A+
Sbjct: 245 LVFARTKQLVDE------YVQEFILDGLPASALHGDKTQGHRNKALEQFKDGKIRVLVAT 298
Query: 324 DEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARG 383
D A RGID +S VIN + P + YIHR GRT R
Sbjct: 299 DVAA-----------------------RGIDIPALSVVINMELPFVAEDYIHRIGRTGRA 335
Query: 384 KNQGTALSFVSLREQDLMND 403
N+G ALSFVS+ E+ ++ +
Sbjct: 336 GNEGLALSFVSIDEEWMLQE 355
>gi|330817865|ref|YP_004361570.1| ATP-dependent RNA helicase [Burkholderia gladioli BSR3]
gi|327370258|gb|AEA61614.1| Putative ATP-dependent RNA helicase 2 [Burkholderia gladioli BSR3]
Length = 485
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 112/388 (28%), Positives = 199/388 (51%), Gaps = 34/388 (8%)
Query: 22 TFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQ 78
TF F + L+AIA+ G+ PT IQ +AIP++L +DV+ A+TG+GKT +F++P+IQ
Sbjct: 12 TFDQFGLAPDILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 79 KII---NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSV 135
+++ N + +AL+L+P++EL +Q+ N+ + ++ + VD++
Sbjct: 72 RLLPQANSSASPARHPVRALILTPTRELADQVAANVHAYAKHTA--LRSAVVFGGVDMNS 129
Query: 136 QEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKF 195
Q L +I++ATP R L H++ KT +L ++++++DEAD + G+ D++ +L
Sbjct: 130 QMAELRRGVEILIATPGRLLDHVQQKTANL-GQVQMLVLDEADRMLDMGFLPDLQRILNL 188
Query: 196 LPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATI 255
LPK Q +L SAT S ++ L L NP +++ + + +A+ D++A +
Sbjct: 189 LPKQRQTLLFSATFSPEIKKLASTYLSNPQTIEVARSNATATNVTQVVYEIAEGDKQAAV 248
Query: 256 LYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQG 315
+ + +L Q I+F N+ +L LE+ + ++ + R A+ F +G
Sbjct: 249 VKLIRDRSLKQ--VIVFCNSKIGASRLARQLERDGVVATAIHGDRSQNERMQALDAFKRG 306
Query: 316 LYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIH 375
+ ++A+D A RG+D + VINFD P + + Y+H
Sbjct: 307 EVEALVATDVAA-----------------------RGLDIAELPAVINFDLPFNAEDYVH 343
Query: 376 RAGRTARGKNQGTALSFVSLREQDLMND 403
R GRT R G ALS S E+ + D
Sbjct: 344 RIGRTGRAGASGDALSLCSPNERKQLAD 371
>gi|71657202|ref|XP_817120.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma cruzi strain CL
Brener]
gi|70882291|gb|EAN95269.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi]
Length = 592
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 132/417 (31%), Positives = 206/417 (49%), Gaps = 54/417 (12%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AI ++ W PT +Q IPL L+ +D+ +++RTGSGKTGAF IP++Q++I +
Sbjct: 23 LEAIKRVKWNLPTPVQGACIPLALKGRDLALQSRTGSGKTGAFVIPILQRVITETEKMCN 82
Query: 90 QETK----ALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPD 145
+ T AL+L PS ELC Q + + L V +++ + V V
Sbjct: 83 RRTAKNPVALILLPSVELCEQTVEVVTALAKYVKPRVVVDNLTSR---GVVTKARVAAAP 139
Query: 146 IVVATPARALAHLKAKTLDLK--SSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAI 203
I+V T A ++ T+ + ++L V+IDE D V S E ++AV LP Q I
Sbjct: 140 ILVTTAALLGKLCRSGTVTAEDLATLRCVVIDEVDFVISIA-EGSLRAVQSVLPPSVQTI 198
Query: 204 LASATLSEDVLSLKHLILRNPVILKLE----------------------EPAIAPVSQLA 241
L+SATL++ V+ +K +L NPV + L + I +L
Sbjct: 199 LSSATLTDGVVHIKSQLLHNPVTITLSTGDEDEMNPTEGENIVVESRITKKGINSEERLR 258
Query: 242 HYHILAQED-EKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSEL 300
HY+++A E+ T+LY L +L ++GKT+IFVN +K YKL+ +L Q + V +S L
Sbjct: 259 HYYLVATEECHHHTLLYALYRLGHIKGKTLIFVNEEEKTYKLQSFLAQLGVEALVYDSNL 318
Query: 301 PAKARCHAVYQFNQGLYDVIIASDEKALET------------PQINSTNNRKRKR--DKE 346
P R +++F G ++ +D LE+ Q +++K KR D+
Sbjct: 319 PLNVRVDTLHRFQVGSVGTLVCTD-GTLESVDNLQESIPGAEAQATRMHSKKGKRTEDRH 377
Query: 347 SG-VSRGIDFQFVSNVINFD---FPLD--IQCYIHRAGRTARGKNQGTALSFVSLRE 397
G + RGIDF V NV+ FD P Y HR GR R G A++ +L++
Sbjct: 378 DGALQRGIDFSDVRNVVLFDGIAHPTTSAFSRYTHRVGRAGRAGKSGMAITLFTLQQ 434
>gi|386752257|ref|YP_006225476.1| ATP-dependent RNA helicase [Helicobacter pylori Shi169]
gi|384558515|gb|AFH98982.1| ATP-dependent RNA helicase [Helicobacter pylori Shi169]
Length = 492
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 110/365 (30%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL V K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQ-VPKKS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDV---- 316
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 317 -------------------ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|356504849|ref|XP_003521207.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 10-like [Glycine
max]
Length = 439
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 112/366 (30%), Positives = 187/366 (51%), Gaps = 32/366 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++A KLGW P IQ AIPL L+ KDV+ A+TGSGKTGAFA+P++ ++ + +
Sbjct: 21 VEACEKLGWKNPLKIQTEAIPLALEGKDVIGLAQTGSGKTGAFALPILHALL---EAPRP 77
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
++ A VLSP++EL Q+ + + L + VKC + +D+ Q + ++P I+V
Sbjct: 78 KDFFACVLSPTRELAIQIAEQFEALGSEIG--VKCAVLVGGIDMVQQSIKIAKQPHIIVG 135
Query: 150 TPARALAHLK-AKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
TP R + HLK K L S L+ +++DEAD + + +E+ + +L+ +P+ + L SAT
Sbjct: 136 TPGRVIDHLKHTKGFSL-SRLKYLVLDEADRLLNEDFEESLNEILQMIPRERRTFLFSAT 194
Query: 209 LSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGK 268
+++ V L+ + LRNPV ++ + Y L + + ++Y L + +
Sbjct: 195 MTKKVQKLQRVCLRNPVKIEASSKYSTVDTLKQQYRFLPAKHKDCYLVYILTE--MAGST 252
Query: 269 TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL 328
+++F T D L L L + +N + R A+ +F G ++++ +D
Sbjct: 253 SMVFTRTCDATRLLALILRNLGLKAIPINGHMSQSKRLGALNKFKSGECNILLCTDV--- 309
Query: 329 ETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGT 388
SRG+D V VIN+D P + + YIHR GRTAR G
Sbjct: 310 --------------------ASRGLDIPTVDMVINYDIPTNSKDYIHRVGRTARAGRSGV 349
Query: 389 ALSFVS 394
A+S V+
Sbjct: 350 AISLVN 355
>gi|119946865|ref|YP_944545.1| ATP-dependent RNA helicase [Psychromonas ingrahamii 37]
gi|119865469|gb|ABM04946.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
ingrahamii 37]
Length = 429
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 122/392 (31%), Positives = 199/392 (50%), Gaps = 44/392 (11%)
Query: 21 FTFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMI 77
+F L +P L+A+ + G+ EP+ IQ +AIP IL+ KDV+ A+TG+GKT F +P++
Sbjct: 1 MSFDLLGLPDSLLKAVKEQGYTEPSPIQAQAIPAILEGKDVMAAAQTGTGKTAGFTLPLL 60
Query: 78 QKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQE 137
++ + + +ALVL+P++EL Q+H ++ T + ++ + V ++ Q
Sbjct: 61 -TLLEKGNRPKPNQVRALVLTPTRELAAQVHASVA--TYGKNMPLRSAVVFGGVKINPQM 117
Query: 138 PLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLP 197
+L + D++VATP R + + K LE++I+DEAD + G+ D+K +L LP
Sbjct: 118 QILRQGVDVLVATPGRLIDLYNQNAVSFK-QLEVLILDEADRMLDMGFIHDIKRILAVLP 176
Query: 198 KLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAH------YHILAQEDE 251
K Q +L SAT S D+ L ++ NPV E +++P + A Y + + +
Sbjct: 177 KQRQNLLFSATFSPDIRRLAKGLVNNPV-----EISVSPRNTTAENVTQTVYEV--DKTK 229
Query: 252 KATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQ 311
K+ +L TL+K N Q + ++FV T +L LE I+ ++ AR A+
Sbjct: 230 KSIVLSTLIKQNDWQ-QVLVFVKTKHGANRLVKSLEGRGITAAAIHGNKSQAARTRALAG 288
Query: 312 FNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQ 371
F +G ++A+D A RGID + V+NFD P +
Sbjct: 289 FKEGQVRALVATDIAA-----------------------RGIDIDQLPQVVNFDLPHVSE 325
Query: 372 CYIHRAGRTARGKNQGTALSFVSLREQDLMND 403
Y+HR GRT R N+G ALS V E L+ D
Sbjct: 326 DYVHRIGRTGRAGNEGQALSLVCNEEFKLLKD 357
>gi|294083671|ref|YP_003550428.1| Superfamily II DNA and RNA helicase [Candidatus Puniceispirillum
marinum IMCC1322]
gi|292663243|gb|ADE38344.1| Superfamily II DNA and RNA helicase [Candidatus Puniceispirillum
marinum IMCC1322]
Length = 464
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 108/367 (29%), Positives = 196/367 (53%), Gaps = 30/367 (8%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ 90
QA+A+LG+ PT IQE++IP+IL +D+L A+TG+GKT +F +PMI + + + A+ +
Sbjct: 14 QAVAELGYESPTPIQEKSIPIILMGRDILGSAQTGTGKTASFTLPMIDILASGR--AKAR 71
Query: 91 ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVAT 150
++L+L+P++EL Q+ ++ ++ + ++ + V S Q L + D+++AT
Sbjct: 72 MPRSLILAPTRELAAQVAESFEKFSTHHKLNMAL--LIGGVSFSDQNTALDKGVDVLIAT 129
Query: 151 PARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLS 210
P R L H + + L + +++++IDEAD + G+ D++ ++ LP L Q + SATLS
Sbjct: 130 PGRLLDHFERGKVML-NDVKVLVIDEADRMLDMGFIPDVERIVSLLPPLRQTLFFSATLS 188
Query: 211 EDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTI 270
+D+ + H + NP I+++ PA + +A + K +L LL++ V+ +
Sbjct: 189 DDIHKISHKFVSNPKIIEVAPPA-STADTVAQHLQWTDVKSKRAVLRDLLRVETVK-NAV 246
Query: 271 IFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALET 330
IF N L L + + S ++ ++ AR A+ +F +G ++IASD A
Sbjct: 247 IFCNRKRDISTLVKSLTKHEFSAVAMHGDMTQSARLEALDKFKKGEVPLLIASDVAA--- 303
Query: 331 PQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTAL 390
RG+D +S+V NFD P++ + Y+HR GRT R G A
Sbjct: 304 --------------------RGLDIAGLSHVFNFDVPMNAEDYVHRIGRTGRAGKSGRAF 343
Query: 391 SFVSLRE 397
+ + ++
Sbjct: 344 TIAAGKD 350
>gi|88802750|ref|ZP_01118277.1| putative ATP-dependent RNA helicase [Polaribacter irgensii 23-P]
gi|88781608|gb|EAR12786.1| putative ATP-dependent RNA helicase [Polaribacter irgensii 23-P]
Length = 411
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 120/369 (32%), Positives = 197/369 (53%), Gaps = 35/369 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+A+ + P+L+Q+ AIPLIL+ K+V+V A+TG+GKT AFA+P+IQ + + Q A+
Sbjct: 13 LKAVAEERFQTPSLVQQEAIPLILEKKNVIVSAQTGTGKTAAFALPIIQLLFD-GQDAEK 71
Query: 90 QE--TKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
E K+L+++P++EL Q+ +N + + +++ + V + Q+ +L + DI+
Sbjct: 72 GEKKIKSLIITPTRELAIQILENFKSFSKYS--NLRASAVFGGVSLEPQKEILSKGIDIL 129
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
+ATP R + +DL S++EI ++DEADL+ G+ +D+K + +F PK Q +L SA
Sbjct: 130 IATPGRLIDLHTQGNIDL-SAIEIFVLDEADLMLDMGFINDIKKIERFCPKQKQTLLFSA 188
Query: 208 TLSEDVLSLKHLILRNPVILKL--EEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLV 265
T+ E ++ L ++++PV++++ EE + QL +Y + K + LLK N +
Sbjct: 189 TMPEKIVELAKKVIKSPVVVEINPEETTAKNIGQLLYY---LPKKNKTDLCLNLLK-NTI 244
Query: 266 QGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE 325
GK IIF T KL+ L + ++ + R A+ F ++IA+D
Sbjct: 245 NGKIIIFRRTKFGVDKLEESLTKNGYKVASIHGDKTQGIRNKAIEDFKNKTAHILIATDV 304
Query: 326 KALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKN 385
SRGID V +INFD P + YIHR GRT R
Sbjct: 305 -----------------------ASRGIDITNVDAIINFDIPNVPETYIHRIGRTGRAGK 341
Query: 386 QGTALSFVS 394
G A SF S
Sbjct: 342 SGIAFSFCS 350
>gi|407893670|ref|ZP_11152700.1| ATP-dependent RNA helicase RhlE [Diplorickettsia massiliensis 20B]
Length = 354
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 112/353 (31%), Positives = 185/353 (52%), Gaps = 33/353 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L I G+ PT IQ +AIP+IL+ +DV+ A+TG+GKT AF +P++Q+++ T Q
Sbjct: 23 LSGIQASGYTAPTPIQNKAIPVILEGQDVVGLAQTGTGKTAAFVLPLLQQLL----TGQK 78
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+AL++ P++EL Q+H+ I+ T+ ++ + V+++ Q +L DI +A
Sbjct: 79 GRLRALIIVPTRELAEQIHQTIR--TLGRDTGLRSTTLYGGVNLTKQFQMLRRGVDIAIA 136
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
P R L H+ + +D S L+ +++DEAD +F FG+ ++ +L +LPK Q++L SAT+
Sbjct: 137 CPGRLLDHIDRQNIDF-SHLQFLVLDEADQMFDFGFLPAIRKILGYLPKKRQSLLFSATM 195
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+ + L IL++PV +++ A+AP + + E K +L LL+ V
Sbjct: 196 PKAIRLLADEILKHPVSIQIG--ALAPATTVEQRLYPVSESLKTALLIRLLQETPVD-SI 252
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
+IF T + +L +LE+ + L R A+ QF +G+ +++A+D A
Sbjct: 253 LIFTRTKHRAKRLAEHLERLGYRSTSFQGNLSQSRRQMALDQFRRGVLQILVATDIAA-- 310
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTAR 382
RGID VS+VINFD P Y HR GRT R
Sbjct: 311 ---------------------RGIDVANVSHVINFDMPATTDAYTHRIGRTGR 342
>gi|420249963|ref|ZP_14753195.1| DNA/RNA helicase, superfamily II [Burkholderia sp. BT03]
gi|398063077|gb|EJL54833.1| DNA/RNA helicase, superfamily II [Burkholderia sp. BT03]
Length = 513
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 115/379 (30%), Positives = 197/379 (51%), Gaps = 37/379 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++A+ +LG+ PT IQ++AIP +L+ D+L A+TG+GKT F +P++Q+++ +
Sbjct: 13 VRAVNELGYTSPTPIQQQAIPAVLKGGDLLAGAQTGTGKTAGFTLPILQRLLTMPPAPGG 72
Query: 90 QE-TKALVLSPSKELCNQLHKNIQE----LTMKCSRDVKCVDISEQVDVSVQEPLLVERP 144
+ +AL+L+P++EL Q+ ++++ L +K + V I+ Q+D L
Sbjct: 73 KRVVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIDA------LRRGV 126
Query: 145 DIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAIL 204
DIVVATP R L H++ KT+DL S LEI+++DEAD + G+ D+K VL LP Q +L
Sbjct: 127 DIVVATPGRLLDHMQQKTIDL-SHLEILVLDEADRMLDMGFIHDIKRVLAKLPPKRQNLL 185
Query: 205 ASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNL 264
SAT S+++ +L +L +P ++++ S H + ++ ++ + + + + N
Sbjct: 186 FSATFSDEIKALADNLLDSPALIEVARRNTTAESVAQKIHPVDRDRKREMLTHLIKQHNW 245
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
Q ++F T +L L + IS ++ AR A+ +F V++A+D
Sbjct: 246 FQ--VLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKNNTLQVLVATD 303
Query: 325 EKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384
A RGID + +V+NFD P + Y+HR GRT R
Sbjct: 304 IAA-----------------------RGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAG 340
Query: 385 NQGTALSFVSLREQDLMND 403
G A+S V + E L+ D
Sbjct: 341 ATGEAVSLVCVDELQLLKD 359
>gi|374997699|ref|YP_004973198.1| DNA/RNA helicase [Desulfosporosinus orientis DSM 765]
gi|357216065|gb|AET70683.1| DNA/RNA helicase, superfamily II [Desulfosporosinus orientis DSM
765]
Length = 500
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 107/383 (27%), Positives = 206/383 (53%), Gaps = 36/383 (9%)
Query: 22 TFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQ 78
TFT + +++I +G+ E T IQE+ IP+ ++ +D++ +A+TG+GKT A+ IP+I+
Sbjct: 3 TFTDLGLSESIIRSIINMGFEETTPIQEQTIPIAMEGRDLIGQAQTGTGKTAAYGIPLIE 62
Query: 79 KIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEP 138
+I+ Q + + +VL+P++EL Q+ + + ++ + + + I + Q
Sbjct: 63 RIV-----GQSEHIQGIVLAPTRELAVQVAEELNKIGQ--YKRIHALPIYGGQGIEWQIR 115
Query: 139 LLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPK 198
L +RP I+VATP R + H++ KT+ L + ++I+++DEAD + + G+ DD++ +LK +P+
Sbjct: 116 ALKKRPHIIVATPGRLMDHMRRKTIRL-NDIKILVLDEADEMLNMGFLDDIETILKEVPE 174
Query: 199 LYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYT 258
Q +L SAT+ + ++ H ++ P ++ ++ + VS + +++ E K +L
Sbjct: 175 ERQTLLFSATMPRQIQNIAHRFMQEPQLISIKATGVT-VSDIEQHYVEVTERLKFDVLSR 233
Query: 259 LLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYD 318
+L + + +I+F T + +L L + S ++ +L R + QF G +
Sbjct: 234 ILDIQSPE-LSIVFARTKKRVDELAEALSKRGYSAEGIHGDLTQNKRDSVLRQFKDGTIE 292
Query: 319 VIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAG 378
V++A+D A RG+D V++V NFD P D + Y+HR G
Sbjct: 293 VLVATDVAA-----------------------RGLDISGVTHVFNFDIPQDPESYVHRVG 329
Query: 379 RTARGKNQGTALSFVSLREQDLM 401
RT R G A++ V+ RE ++
Sbjct: 330 RTGRAGKSGLAITLVTPREIGML 352
>gi|209550473|ref|YP_002282390.1| DEAD/DEAH box helicase [Rhizobium leguminosarum bv. trifolii
WSM2304]
gi|209536229|gb|ACI56164.1| DEAD/DEAH box helicase domain protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 567
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 116/384 (30%), Positives = 195/384 (50%), Gaps = 35/384 (9%)
Query: 20 PFTFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQK 79
P TLF +LG PT IQE+AIPL+L+ +D++ A+TG+GKT AF +P+I+K
Sbjct: 12 PIVATLF--------QLGIETPTPIQEQAIPLLLEGRDLIGLAQTGTGKTAAFGLPLIEK 63
Query: 80 IINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL 139
++ ++ + T+ L+L+P++EL NQ+ + +++ K + V V ++ Q+
Sbjct: 64 LLADERRPDNRTTRTLILAPTRELVNQIAETLKKFIRKSHLRINVV--VGGVSINKQQLQ 121
Query: 140 LVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199
L + D++VATP R L + + + L +++ +++DEAD + G+ D++ + K +PK
Sbjct: 122 LEKGTDVLVATPGRLLDLINRRAISL-TTVRYLVLDEADQMLDLGFVHDLRKIAKMVPKK 180
Query: 200 YQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTL 259
Q +L SAT+ + + L L +PV +++ P A + H +A +++K +L
Sbjct: 181 RQTMLFSATMPKAIADLAGDYLVDPVKVEVTPPGKAADKVEQYVHFVAGKNDKTELLRKS 240
Query: 260 LKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDV 319
L N G+ I+F+ T KL +LE S ++ R A+ F G
Sbjct: 241 LTEN-PDGRAIVFLRTKHGAEKLMKHLENIGYSVASIHGNKSQGQRERALKAFRDGSIKT 299
Query: 320 IIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGR 379
+IA+D A RGID VS+V N+D P Y+HR GR
Sbjct: 300 LIATDVAA-----------------------RGIDIPAVSHVYNYDLPEVPDAYVHRIGR 336
Query: 380 TARGKNQGTALSFVSLREQDLMND 403
TAR G A++F + E L+ D
Sbjct: 337 TARAGRDGIAIAFCAPDEAKLLRD 360
>gi|168185435|ref|ZP_02620070.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum C str.
Eklund]
gi|169296498|gb|EDS78631.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum C str.
Eklund]
Length = 476
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 115/384 (29%), Positives = 205/384 (53%), Gaps = 39/384 (10%)
Query: 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIIN 82
F L L+ I LG+ PT +QE+ IP++LQ KD++V+++TGSGKT +F IP+ +K+
Sbjct: 6 FKLSSEILKTIKMLGYKNPTEVQEKTIPIVLQGKDIIVKSQTGSGKTASFGIPLCEKV-- 63
Query: 83 LKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVE 142
+ ++ +AL+L+P++EL Q+ ++I + + VKCV + + VS+Q+ L +
Sbjct: 64 ---KLENKKPQALILTPTRELAVQIKEDISNIGR--FKKVKCVAVYGKEPVSIQKNQLKQ 118
Query: 143 RPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQA 202
R IVV TP R H++ LDL S ++ +IIDEAD + + G+ D ++ ++K L
Sbjct: 119 RVHIVVGTPGRTFDHIQKGNLDL-SDVKYLIIDEADKMLNMGFIDQVEDIIKRLSTDRIT 177
Query: 203 ILASATLSEDVLSLKHLILRNPVILKLE-EPAIAPVSQLAHYHILAQEDEKATILYTLLK 261
+L SATL E + L + NP ++++ E V + +Y + + + TL K
Sbjct: 178 MLFSATLEERIEKLCKRYMNNPEKIEIKRENVTTDVIEQEYYKV-----DHSKRFNTLTK 232
Query: 262 L--NLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDV 319
+ V IIF NT + + ++ + L+ + K R + + F +G +
Sbjct: 233 VIYAEVPDSAIIFCNTKVEVGNVANKMKNEGFNAKALHGGMDQKDRLYTINDFKRGKFQF 292
Query: 320 IIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGR 379
++A+D A RGID + +++VIN++ P++ + Y+HR GR
Sbjct: 293 LVATDVAA-----------------------RGIDVEEITHVINYEVPVEKEGYVHRIGR 329
Query: 380 TARGKNQGTALSFVSLREQDLMND 403
T R ++G +++FVS E+ + N+
Sbjct: 330 TGRAGHKGKSITFVSDYEKRMFNE 353
>gi|427702212|ref|YP_007045434.1| DNA/RNA helicase [Cyanobium gracile PCC 6307]
gi|427345380|gb|AFY28093.1| DNA/RNA helicase, superfamily II [Cyanobium gracile PCC 6307]
Length = 640
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 114/373 (30%), Positives = 189/373 (50%), Gaps = 32/373 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L +A +G+ EP+ IQ+ AIP ++ +D++ +A+TG+GKT AF +P+++++ ++T QV
Sbjct: 90 LDGLAAIGFEEPSPIQKAAIPELMLGRDLVGQAQTGTGKTAAFGLPLLERLDPGQRTPQV 149
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
LVL+P++EL Q+ + + + VK + + D Q L IVV
Sbjct: 150 -----LVLTPTRELAMQVAEAFNSYAARM-KGVKVLPVYGGADFRDQIQQLRRGVQIVVG 203
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + H++ TLDL S L +++DEAD + G+ DD+K VL+ LP Q +L SAT+
Sbjct: 204 TPGRVMDHMRQGTLDL-SGLRSLVLDEADEMLRMGFIDDVKWVLEQLPAERQVVLFSATM 262
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
++ + LRNP + + + A A ++ H++ +K L +L+ +G
Sbjct: 263 PPEIRRISQNHLRNPAEITIRQKA-ADGRRIRQRHLVVNGPQKLEALERVLEAEGSEG-V 320
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
IIF T + LEQ VLN ++P R + + G +V++A+D A
Sbjct: 321 IIFARTKAITLTVAESLEQHGYDVAVLNGDVPQTQRERTIERLRDGRVNVLVATDVAA-- 378
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
RG+D + VIN+D P D + Y+HR GRT R G A
Sbjct: 379 ---------------------RGLDVDRIGLVINYDIPFDGEAYVHRIGRTGRAGRSGEA 417
Query: 390 LSFVSLREQDLMN 402
+ F++ RE+ +
Sbjct: 418 ILFLTPRERRFLG 430
>gi|399887624|ref|ZP_10773501.1| ATP-dependent RNA helicase [Clostridium arbusti SL206]
Length = 479
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 109/362 (30%), Positives = 200/362 (55%), Gaps = 37/362 (10%)
Query: 35 KLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQET-- 92
KLG+ PT +QE+ IPL+L+NKD++V+++TGSGKT AFAIP+ +K+ +++ +
Sbjct: 19 KLGYKNPTEVQEKVIPLVLKNKDIIVKSQTGSGKTAAFAIPICEKV-------EIENSYP 71
Query: 93 KALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPA 152
+AL+L+P++ELC Q+ ++I + + V+C + + S Q L +R +VV TP
Sbjct: 72 QALILTPTRELCVQIKEDISNIGR--FKKVRCAAVFGKQIFSSQVKELKQRVHVVVGTPG 129
Query: 153 RALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSED 212
R + H++ T+DL S ++ ++IDEAD + + G+ D +K ++ LPK +L SAT+SE+
Sbjct: 130 RTMDHIERGTIDL-SRIKYLVIDEADEMLNMGFIDQVKDIINKLPKNKMTMLFSATMSEN 188
Query: 213 VLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTIIF 272
+ L + +R P ++ ++ A ++ Y+ + EK +L ++ + IIF
Sbjct: 189 IQLLCNKYMREPEVINIKSKK-AITEKIEDYYYYVEGREKLDLLEKVI-YSENPDSCIIF 246
Query: 273 VNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQ 332
+T + L L++ +++ + + R + + F +G + ++A+D A
Sbjct: 247 CSTRNTVENLFSQLKEKGFPCGLIHGGMLQQDRLNVMEDFKRGKFTFLVATDIAA----- 301
Query: 333 INSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSF 392
RGID +++VI++D P + + Y+HR GRT R +N G A+SF
Sbjct: 302 ------------------RGIDIDNITHVISYDIPFEKESYVHRIGRTGRAENTGKAISF 343
Query: 393 VS 394
+
Sbjct: 344 AT 345
>gi|344199440|ref|YP_004783766.1| DEAD/DEAH box helicase domain-containing protein [Acidithiobacillus
ferrivorans SS3]
gi|343774884|gb|AEM47440.1| DEAD/DEAH box helicase domain protein [Acidithiobacillus
ferrivorans SS3]
Length = 419
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 115/375 (30%), Positives = 197/375 (52%), Gaps = 30/375 (8%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQ-- 88
+A A+ G+ PT IQE+AIP+++ D+L A+TG+GKT AFA+P++ K+ TA
Sbjct: 15 RAAAERGYTSPTPIQEQAIPVVMSGVDLLAGAQTGTGKTAAFAMPILHKLSATADTAARG 74
Query: 89 VQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
+AL+L P++EL Q+ +++Q S ++ + + V ++ Q L D++V
Sbjct: 75 PSSVRALILVPTRELAAQVEESVQLYGRYLS--LRSLVLIGGVKINPQMQKLRRSVDVLV 132
Query: 149 ATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
ATP R L H++ +++DL S +EI+++DEAD + G+ D++ +L LPK Q +L SAT
Sbjct: 133 ATPGRLLDHIQQRSVDL-SRVEILVLDEADRMLDMGFIRDIRRILAVLPKKRQNLLFSAT 191
Query: 209 LSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGK 268
S ++ +L +L NP +++ A +A +D K +L L++ + G+
Sbjct: 192 FSPEIRALADGLLNNPASVEVASRN-ATADNVAQRVFAVDQDRKRELLAHLIEEHQ-WGQ 249
Query: 269 TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL 328
++F T +L +L Q + ++ + AR A+ +F +G V++A+D A
Sbjct: 250 VLVFTRTKHGADRLAKHLSQDGVQAMAIHGDKSQGARTRALAEFKEGKVRVLVATDIAA- 308
Query: 329 ETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGT 388
RGID + +V+NF+ P + Y+HR GRT R N G
Sbjct: 309 ----------------------RGIDISDLPHVVNFELPHVPEDYVHRIGRTGRAGNNGQ 346
Query: 389 ALSFVSLREQDLMND 403
A+S VS E+ + D
Sbjct: 347 AVSLVSSEERKQLQD 361
>gi|295675961|ref|YP_003604485.1| DEAD/DEAH box helicase [Burkholderia sp. CCGE1002]
gi|295435804|gb|ADG14974.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
Length = 484
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 112/388 (28%), Positives = 198/388 (51%), Gaps = 34/388 (8%)
Query: 22 TFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQ 78
TF F + L+AI + G+ PT IQ +AIP++L +DV+ A+TG+GKT +F++P+IQ
Sbjct: 12 TFDQFGLAPDILKAIKESGYTSPTPIQAKAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 79 KII---NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSV 135
+++ N + +AL+L+P++EL +Q+ N+Q + ++ + VD++
Sbjct: 72 RLLPQANTSASPARHPVRALILTPTRELADQVAANVQAYAKHTA--LRSAVVFGGVDMNP 129
Query: 136 QEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKF 195
Q L +I++ATP R L H++ KT +L ++++++DEAD + G+ D++ +L
Sbjct: 130 QSDQLRRGVEILIATPGRLLDHVQQKTANL-GQVQMLVLDEADRMLDMGFLPDLQRILNL 188
Query: 196 LPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATI 255
LPK Q +L SAT S ++ L LRNP +++ + + +A+ D+ +
Sbjct: 189 LPKERQTLLFSATFSGEIKKLAATYLRNPQTIEVARSNSTATNVTQVVYEVAEGDKTGAV 248
Query: 256 LYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQG 315
+ + + L Q I+F N+ +L LE+ + ++ + R A+ F +G
Sbjct: 249 VQLIRERGLKQ--VIVFCNSKIGASRLARSLERDGVVATAIHGDRSQSERMQALDAFKRG 306
Query: 316 LYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIH 375
+ ++A+D A RG+D + VINFD P + + Y+H
Sbjct: 307 EVEALVATDVAA-----------------------RGLDIAELPAVINFDLPFNAEDYVH 343
Query: 376 RAGRTARGKNQGTALSFVSLREQDLMND 403
R GRT R G ALS S E+ + D
Sbjct: 344 RIGRTGRAGASGDALSLCSPNERKQLAD 371
>gi|429329858|gb|AFZ81617.1| DEAD box ATP-dependent RNA helicase family member protein [Babesia
equi]
Length = 562
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 127/376 (33%), Positives = 194/376 (51%), Gaps = 43/376 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII-------- 81
L AI+ L + PT+IQ R IP+ L+ KD+L A TGSGKT AF IPM+Q+++
Sbjct: 82 LLAISDLEFTRPTIIQSRVIPIALEGKDILATAETGSGKTAAFIIPMLQRLVLSNVLTPK 141
Query: 82 NLK---QTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEP 138
N K + + TKALVL P++EL Q + ++ LT ++ + ++ + + QE
Sbjct: 142 NGKFGFRNSTKDVTKALVLLPTRELAAQCYDVLKALTRFL--NINDILLTGGIPIKEQET 199
Query: 139 LLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPK 198
L P+++++TP RAL L S+EIVI+DEAD + G+ D+ +LKF K
Sbjct: 200 KLSRIPNVIISTPGRALDILLNSGRIHLDSVEIVILDEADRLLEMGFRDECVNILKFCNK 259
Query: 199 LYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYH-ILAQEDE--KATI 255
Q +L SATL+E+ L +L L NP+ +K+EE VS+ ++ I+ DE +A +
Sbjct: 260 NRQTMLFSATLTEETKDLVNLSLVNPIYIKMEES--TKVSKTLNFEAIMIPSDELREACV 317
Query: 256 LYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQG 315
LY L + K I+F T +++ L + +S L+ +L R +V +F G
Sbjct: 318 LY--LCETQCKSKCILFFQTKKSAHRMALIFKLLNMSCGELHGDLSQLKRFESVQKFRNG 375
Query: 316 LYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIH 375
D ++AS+ A RG+D + VIN P D+ YIH
Sbjct: 376 EVDYLLASELAA-----------------------RGLDIPGIDTVINVHLPTDVVRYIH 412
Query: 376 RAGRTARGKNQGTALS 391
R GRTAR + G A+S
Sbjct: 413 RVGRTARMGSHGKAIS 428
>gi|218709165|ref|YP_002416786.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
gi|218322184|emb|CAV18298.1| putative ATP-dependent RNA helicase [Vibrio splendidus LGP32]
Length = 418
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 122/380 (32%), Positives = 198/380 (52%), Gaps = 41/380 (10%)
Query: 24 TLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINL 83
T+ IP Q + +PT IQ+ IP I+ KDVL A+TGSGKT AF +P++ I +
Sbjct: 18 TVSAIPSQ------FNKPTEIQQAVIPTIIAGKDVLALAQTGSGKTLAFGLPLLNSIKH- 70
Query: 84 KQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVER 143
V E +A+++ P++EL +Q+ K ++ + + D+K V ++ VD+ +Q+ L+E+
Sbjct: 71 ----DVNELQAIIIVPTRELASQVAKALEPIA--TTLDIKTVTLTGGVDIEIQQQQLLEK 124
Query: 144 PDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAI 203
P +V+ATP R A ++ L+L + + +I+DEAD + G+ D++ ++ LPK +Q +
Sbjct: 125 PQLVIATPGRLHAVIQENKLEL-TQCKSIILDEADRLLDMGFWPDVQTIISALPKKHQTL 183
Query: 204 LASATLSEDVLSLKHLILRNPV-ILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKL 262
L SATL ++++S +L NPV + +E ++ V+ + L + KA L LL
Sbjct: 184 LFSATLPKELISQTEALLVNPVKVTTHQENSV--VAAIEETLYLVNKGSKAQALIALLNQ 241
Query: 263 NLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIA 322
+ + ++F+ D L L + KIS L+ + R A+ F G V+IA
Sbjct: 242 H-AWSQVLVFIGAKDNADALTKRLSKAKISVNALHGNKNQEEREQALESFKNGKTRVLIA 300
Query: 323 SDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTAR 382
+D A RGI + VINFD P Y+HR GRTAR
Sbjct: 301 TDVMA-----------------------RGIHIDQLPVVINFDLPSHSATYVHRVGRTAR 337
Query: 383 GKNQGTALSFVSLREQDLMN 402
+ G+A+S VS E D +N
Sbjct: 338 AGSTGSAISLVSHSETDYLN 357
>gi|420481826|ref|ZP_14980463.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-2]
gi|393099060|gb|EJB99641.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-2]
Length = 492
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 191/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPE-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F +T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTHTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|409911469|ref|YP_006889934.1| ATP-dependent RNA helicase RhlE [Geobacter sulfurreducens KN400]
gi|298505039|gb|ADI83762.1| ATP-dependent RNA helicase RhlE [Geobacter sulfurreducens KN400]
Length = 446
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 117/363 (32%), Positives = 187/363 (51%), Gaps = 33/363 (9%)
Query: 32 AIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQE 91
+A G+ PT IQ +AIP ++ +DV+ A+TG+GKT AFA+P++ ++ Q +
Sbjct: 15 GVAAAGYETPTPIQAQAIPAVMAGRDVMGLAQTGTGKTAAFALPILHRL----QQGERGR 70
Query: 92 TKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATP 151
+ALV++P++EL Q++ + +T+ ++ V + V V+ Q L ++VVA P
Sbjct: 71 VRALVIAPTRELAEQINDSF--VTLGRQTRLRSVTVYGGVGVNPQVQKLKAGAEVVVACP 128
Query: 152 ARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSE 211
R L H+ T+DL S LE++++DEAD +F G+ D++ VLK LP Q +L SAT+
Sbjct: 129 GRLLDHIAQGTIDL-SRLEVLVLDEADQMFDMGFLPDIRRVLKHLPSRRQTLLFSATMPI 187
Query: 212 DVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTII 271
D+ +L IL +PV +++ +AP +AH ++ K +L LL+ + +I
Sbjct: 188 DIRALAQEILVDPVTVQVGN--VAPAVTVAHALYPVEQHLKTPLLLELLRHTDTE-SVLI 244
Query: 272 FVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETP 331
F T + +L LE+ L L R A+ F G Y +++A+D A
Sbjct: 245 FTRTKHRAKRLGEQLEKAGYRAASLQGNLSQNRRQAALDGFRDGTYQILVATDIAA---- 300
Query: 332 QINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALS 391
RGID VS+VIN+D P + YIHR GRT R G A +
Sbjct: 301 -------------------RGIDVSQVSHVINYDIPDTAEAYIHRIGRTGRAARSGDAFT 341
Query: 392 FVS 394
V+
Sbjct: 342 LVT 344
>gi|406876883|gb|EKD26305.1| hypothetical protein ACD_79C01270G0003 [uncultured bacterium]
Length = 450
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 110/380 (28%), Positives = 196/380 (51%), Gaps = 35/380 (9%)
Query: 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIIN 82
F L + + + PT IQ++AIP IL+ DV+ A+TG+GKT AF +P++ K++
Sbjct: 6 FNLHHNVMAGVKAASYETPTPIQKQAIPPILKGSDVMGLAQTGTGKTAAFVLPILHKLME 65
Query: 83 LKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVE 142
+AL+++P++EL Q+H+ IQ L + ++ + + V + Q L
Sbjct: 66 ----GHRGHIRALIIAPTRELAEQIHETIQTLGRETR--LRSITVYGGVSIVPQIHKLKT 119
Query: 143 RPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQA 202
+IVVA P R L H+K +T++L + ++I+++DEAD +F G+ D++ +++ +P+ Q
Sbjct: 120 GIEIVVACPGRLLDHIKQRTINL-THIDILVLDEADRMFDMGFLPDIRRIIRHIPERRQT 178
Query: 203 ILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAH-YHILAQEDEKATILYTLLK 261
++ SAT+ D+ L H +L+ P+ ++++ AP + +AH + + Q + A +L L
Sbjct: 179 LMFSATMPSDIRKLAHEVLQTPITVQVDHS--APANTVAHALYPVPQHLKTALLLELLRH 236
Query: 262 LNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVII 321
N +IF T + +L +LE+ + L R A+ F +G Y +++
Sbjct: 237 TNT--DSVLIFTRTKHRAKRLGEHLEKVGYLAVSIQGNLSQNKRQAALDGFRKGTYQILV 294
Query: 322 ASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTA 381
A+D A RGID +S+VIN+D P Y HR GRT
Sbjct: 295 ATDIAA-----------------------RGIDVSTISHVINYDIPDTADAYTHRIGRTG 331
Query: 382 RGKNQGTALSFVSLREQDLM 401
R G A +FV+ + +++
Sbjct: 332 RAAKTGDAFTFVTPEDNEMV 351
>gi|255017210|ref|ZP_05289336.1| hypothetical protein LmonF_04463 [Listeria monocytogenes FSL
F2-515]
Length = 394
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 110/373 (29%), Positives = 200/373 (53%), Gaps = 43/373 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++++ ++G+ E T IQE+ IPL L+ KD++ +A+TG+GKT AF +PMI KI Q
Sbjct: 14 VKSVNRMGFEEATPIQEKTIPLGLEGKDLIGQAQTGTGKTAAFGLPMIHKIDQKSNNVQ- 72
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
AL+++P++EL Q+ + + +L+ + V+ + + D+S Q L + P IVV
Sbjct: 73 ----ALIIAPTRELAIQVSEELYKLS--YDKHVRVLAVYGGSDISRQIRSLKKNPQIVVG 126
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H+ +TL L +E +++DEAD + + G+ DD++ +LK +P Q +L SAT+
Sbjct: 127 TPGRILDHINRRTLKL-DHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLLFSATM 185
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLL-----KLNL 264
+ + + + +P +++++ + + + + + E EK +L LL +L +
Sbjct: 186 PDPIRRIGERFMHSPELIRIKAKEMTALL-IEQFFVKVHEKEKFDVLSRLLDVQAPELAI 244
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
V G+T V+ + + ++ Y+ + ++ +L R + +F +G DV++A+D
Sbjct: 245 VFGRTKRRVDELSRALDMRGYVAEG------IHGDLTQAKRMSVLRKFKEGKIDVLVATD 298
Query: 325 EKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384
A RG+D V++V N+D P D + Y+HR GRT R
Sbjct: 299 VAA-----------------------RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG 335
Query: 385 NQGTALSFVSLRE 397
+G A++FV RE
Sbjct: 336 KEGMAITFVQPRE 348
>gi|241767199|ref|ZP_04764950.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
gi|241362168|gb|EER58246.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
Length = 489
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 114/376 (30%), Positives = 204/376 (54%), Gaps = 31/376 (8%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV- 89
+A+A++G+ T IQ +AIP++L KDV+ A+TG+GKT AF++P++Q+++ + ++
Sbjct: 16 RAVAEMGYESMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQRLLKHESSSTSP 75
Query: 90 --QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
+ALVL P++EL +Q+ + I L K ++ ++ + +D+ Q L + +++
Sbjct: 76 ARHPVRALVLLPTRELADQVAQQIA-LYAKYTK-LRSTVVFGGMDMKPQTLELKKGVEVL 133
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
VATP R L H++AK L + +E V++DEAD + G+ D++ +L +LPK +L SA
Sbjct: 134 VATPGRLLDHIEAKNAVL-NQVEYVVLDEADRMLDIGFLPDLQRILSYLPKQRTTLLFSA 192
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
T S ++ L L++P+ +++ P + H++ A +D+K ++ +LK ++
Sbjct: 193 TFSPEIKRLAGSYLQDPITIEVARPNETASTVEQHFYS-ANDDDKRHAIHQVLKSRGIK- 250
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
+ IFVN+ C +L LE+ + T L+ + R A+ F QG D+++ +D A
Sbjct: 251 QAFIFVNSKLGCARLARSLEREGLKTAALHGDKSQDERLKALDAFKQGAVDLLVCTDVAA 310
Query: 328 LETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQG 387
RG+D + V V NFD P + + Y+HR GRT R G
Sbjct: 311 -----------------------RGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASG 347
Query: 388 TALSFVSLREQDLMND 403
A++ VS + L+ D
Sbjct: 348 LAVTLVSGSDARLVAD 363
>gi|241205862|ref|YP_002976958.1| DEAD/DEAH box helicase [Rhizobium leguminosarum bv. trifolii
WSM1325]
gi|240859752|gb|ACS57419.1| DEAD/DEAH box helicase domain protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 580
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 116/384 (30%), Positives = 196/384 (51%), Gaps = 35/384 (9%)
Query: 20 PFTFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQK 79
P TLF +LG PT IQE +IPL+L+ +D++ A+TG+GKT AF +P+I+K
Sbjct: 33 PIIATLF--------QLGIETPTPIQEHSIPLLLEGRDLIGLAQTGTGKTAAFGLPLIEK 84
Query: 80 IINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL 139
++ ++ + T+ L+L+P++EL NQ+ +++++ K S + V V ++ Q+
Sbjct: 85 LLADERRPDNRTTRTLILAPTRELVNQIAESLKKFIRKSSLRINVV--VGGVSINKQQLQ 142
Query: 140 LVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199
L + DI+VATP R L + + + L +++ +++DEAD + G+ D++ + K +PK
Sbjct: 143 LEKGTDILVATPGRLLDLINRRAITL-TAVRYLVLDEADQMLDLGFVHDLRKIAKMVPKK 201
Query: 200 YQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTL 259
Q +L SAT+ + + L L +PV +++ P A + H +A +++K +L
Sbjct: 202 RQTMLFSATMPKAIADLAGEYLVDPVKVEVTPPGKAADKVEQYVHFVAGKNDKTELLRKS 261
Query: 260 LKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDV 319
L N G+ ++F+ T KL +LE S ++ R A+ F G
Sbjct: 262 LTEN-PDGRAMVFLRTKHGAEKLMKHLENIGYSVASIHGNKSQGQRERALKAFRDGSIKT 320
Query: 320 IIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGR 379
+IA+D A RGID VS+V N+D P Y+HR GR
Sbjct: 321 LIATDVAA-----------------------RGIDIPAVSHVYNYDLPEVPDAYVHRIGR 357
Query: 380 TARGKNQGTALSFVSLREQDLMND 403
TAR G A++F + E L+ D
Sbjct: 358 TARAGRDGIAIAFCAPDEAKLLRD 381
>gi|420441616|ref|ZP_14940561.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-36]
gi|393059745|gb|EJB60620.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-36]
Length = 491
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 191/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPE-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F +T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTHTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|154490238|ref|ZP_02030499.1| hypothetical protein PARMER_00470 [Parabacteroides merdae ATCC
43184]
gi|423721833|ref|ZP_17696009.1| hypothetical protein HMPREF1078_00072 [Parabacteroides merdae
CL09T00C40]
gi|154089130|gb|EDN88174.1| DEAD/DEAH box helicase [Parabacteroides merdae ATCC 43184]
gi|409242846|gb|EKN35605.1| hypothetical protein HMPREF1078_00072 [Parabacteroides merdae
CL09T00C40]
Length = 427
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 119/372 (31%), Positives = 194/372 (52%), Gaps = 33/372 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L + + +LE T +QE IP+IL+ KD++ A+TG+GKT A+ +P+I ++ K
Sbjct: 13 LDGLDAMNFLETTPVQELTIPVILEGKDIIACAQTGTGKTAAYVLPVINEL--SKGLHPA 70
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCS-RDVKCVDISEQVDVSVQEPLLVERPDIVV 148
A++++P++EL Q+ + I+ T V ++ + Q+ + DIV+
Sbjct: 71 NAINAIIMAPTRELAQQIDQQIEGFTYFVPVSAVAVYGGTDGIAWEQQKRGMEMGADIVI 130
Query: 149 ATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
ATP R L+H+K T+DL S + ++DEAD + G+ DD+ V K LP Q I+ SAT
Sbjct: 131 ATPGRLLSHIKLGTVDL-SQVSFFVLDEADRMLDMGFYDDIMQVYKLLPATCQTIMFSAT 189
Query: 209 LSEDVLSLKHLILRNPVILKLEEPAIA-PVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
+ + +L IL+NP +K+ AI+ P + + + +K IL L + Q
Sbjct: 190 MPPKIRTLAQTILKNPEEVKI---AISRPPETIMQTAYVCYDMQKLRILEDLFSKSRPQ- 245
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
+ IIF ++ K +L L++ K + ++S+L R + +F G D+++A+D
Sbjct: 246 RVIIFSSSKMKVKELASTLKRMKFNVAAMHSDLEQSQREEVMKEFKNGRIDILVATDV-- 303
Query: 328 LETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKN-Q 386
VSRGID + VINFD P D + Y+HR GRTARG N +
Sbjct: 304 ---------------------VSRGIDINDIKLVINFDIPHDPEDYVHRIGRTARGTNGE 342
Query: 387 GTALSFVSLREQ 398
G A++F+S EQ
Sbjct: 343 GLAITFISTEEQ 354
>gi|410631430|ref|ZP_11342105.1| ATP-dependent RNA helicase DeaD [Glaciecola arctica BSs20135]
gi|410148876|dbj|GAC18972.1| ATP-dependent RNA helicase DeaD [Glaciecola arctica BSs20135]
Length = 585
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 122/384 (31%), Positives = 191/384 (49%), Gaps = 35/384 (9%)
Query: 21 FTFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMI 77
TF +P LQA+ K+G+ +PT IQ IPLIL DVL A+TG+GKT AFA+PM+
Sbjct: 8 ITFRDLNLPEELLQALDKVGYEKPTPIQAECIPLILDGHDVLGTAQTGTGKTAAFALPML 67
Query: 78 QKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQE 137
I + T+ LVL+P++EL Q+ + Q + S+ + + I Q
Sbjct: 68 ANI-----DPDDKNTQLLVLAPTRELAIQVAEAFQ-VYASFSKKINVLPIYGGSSYDNQI 121
Query: 138 PLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLP 197
L +VV TP R + H+K TL L L+ +++DEAD + G+ DD+ +L P
Sbjct: 122 RQLRRGTQVVVGTPGRVIDHIKKGTLKL-DKLKFLVLDEADEMLRMGFIDDVTWILGHAP 180
Query: 198 KLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILY 257
+ Q L SAT+ + + + L +P +K+E +A S + + K L
Sbjct: 181 EKRQTALFSATMPDPIRKITKRYLNDPKSVKIES-KVATASTIRQRYCQVAGHHKLEALT 239
Query: 258 TLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLY 317
+L++ + G IIFV T +L L + LN ++P +R V + +G
Sbjct: 240 RILEVEVFDG-VIIFVRTKTATMELAEKLSARGYAVEPLNGDIPQNSRERTVDRLKKGKI 298
Query: 318 DVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRA 377
D+++A+D V+RG+D + VS+VINFD P D + Y+HR
Sbjct: 299 DILVATDV-----------------------VARGLDVERVSHVINFDVPYDTESYVHRI 335
Query: 378 GRTARGKNQGTALSFVSLREQDLM 401
GRT R +G A+ F+S RE+ ++
Sbjct: 336 GRTGRAGREGDAILFISHREKRML 359
>gi|307729080|ref|YP_003906304.1| DEAD/DEAH box helicase [Burkholderia sp. CCGE1003]
gi|307583615|gb|ADN57013.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1003]
Length = 487
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 128/457 (28%), Positives = 222/457 (48%), Gaps = 42/457 (9%)
Query: 22 TFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQ 78
TF F + L+A+ + G+ PT IQ +AIP++L +DV+ A+TG+GKT +F++P+IQ
Sbjct: 12 TFDQFGLAPDILKAVKESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 79 KIINLKQTAQV---QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSV 135
+++ T+ +AL+L+P++EL +Q+ N+Q + ++ + VD++
Sbjct: 72 RLLPQASTSASPARHPVRALILTPTRELADQVAANVQAYAKHTA--LRSAVVFGGVDMNP 129
Query: 136 QEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKF 195
Q L +I++ATP R L H++ KT +L ++I+++DEAD + G+ D++ +L
Sbjct: 130 QSEQLRRGVEILIATPGRLLDHVQQKTANL-GQVQILVLDEADRMLDMGFLPDLQRILNL 188
Query: 196 LPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATI 255
LPK Q +L SAT S ++ L LRNP +++ + + +A+ D+ +
Sbjct: 189 LPKERQTLLFSATFSGEIKKLAATYLRNPQTIEVARSNSTATNVTQIVYEVAEGDKTGAV 248
Query: 256 LYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQG 315
+ + + +L Q I+F N+ +L LE+ + ++ + R A+ F +G
Sbjct: 249 VQLIRERSLKQ--VIVFCNSKIGASRLARSLERDGVVATAIHGDRSQNERMQALDAFKRG 306
Query: 316 LYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIH 375
+ ++A+D A RG+D + VINFD P + + Y+H
Sbjct: 307 EIEALVATDVAA-----------------------RGLDIAELPAVINFDLPFNAEDYVH 343
Query: 376 RAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFI 435
R GRT R G ALS S E+ + D L L Q L D + + HED
Sbjct: 344 RIGRTGRAGASGDALSLCSPNERKQLADIEKLIKRPLDVQRLTVDAP---VRHHHEDRAP 400
Query: 436 IKPYQFNLDEVKGFEYRAKDAW----RSNYFEDNPTD 468
+ DE +G RA + R ++ P D
Sbjct: 401 RRERGEGRDE-RGARRRAGSSSGSFDRPHHHRAQPVD 436
>gi|116748890|ref|YP_845577.1| DEAD/DEAH box helicase [Syntrophobacter fumaroxidans MPOB]
gi|116697954|gb|ABK17142.1| DEAD/DEAH box helicase domain protein [Syntrophobacter fumaroxidans
MPOB]
Length = 471
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 118/377 (31%), Positives = 199/377 (52%), Gaps = 34/377 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AIA + PT IQ++A+P+IL KDVL A+TG+GKT FA+P++Q + +T
Sbjct: 13 LRAIADQHYKHPTPIQQQAVPVILDGKDVLAGAQTGTGKTAGFALPLLQLLSKRPRTKGK 72
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+AL+L+P++EL Q+ +++ +K + V+++ Q L DI+VA
Sbjct: 73 TSVRALILTPTRELAAQVEESVASYGKYLP--LKAAVVHGGVNINPQIAKLRRGIDILVA 130
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H++ +TLDL ++EI+++DEAD + G+ D++ +L LP Q +L AT
Sbjct: 131 TPGRLLDHVQQRTLDL-CAVEILVLDEADRMLDMGFIRDIRKILALLPVRRQNLLFFATF 189
Query: 210 SEDVLSLKHLILRNPVILKLEE---PAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQ 266
S+++ +L +LR+PV+++ E PA + V+QL H K +L L+ N +
Sbjct: 190 SDEIKTLAEDLLRSPVLIETERRNTPAES-VAQLIHP---VDRVRKRELLSFLIGSNNWR 245
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
+ ++F T +L LE I ++S R ++ F G V++A+D
Sbjct: 246 -QVLVFTRTKHGADRLTRQLEHDGIRAAAIHSNKSQATRTRSLADFKHGDVRVLVATDIA 304
Query: 327 ALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQ 386
A RG+D + +V+NF+ P + Y+HR GRT R +
Sbjct: 305 A-----------------------RGLDIDHLPHVVNFELPSVSRDYVHRIGRTGRAERS 341
Query: 387 GTALSFVSLREQDLMND 403
GTA+S VS+ E++ + +
Sbjct: 342 GTAISLVSIDEREQLKE 358
>gi|320355280|ref|YP_004196619.1| DEAD/DEAH box helicase [Desulfobulbus propionicus DSM 2032]
gi|320123782|gb|ADW19328.1| DEAD/DEAH box helicase domain protein [Desulfobulbus propionicus
DSM 2032]
Length = 552
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 115/376 (30%), Positives = 194/376 (51%), Gaps = 36/376 (9%)
Query: 22 TFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQ 78
TF F + +Q + +LG+ +PT IQ+ AIPL+L+ +D++ +A+TG+GKT AF +P++Q
Sbjct: 5 TFARFGLHPDLVQTVTELGFTDPTPIQQAAIPLLLEGRDLIGQAQTGTGKTAAFGLPLLQ 64
Query: 79 KIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEP 138
+I T + Q +ALVL+P++EL Q+ + IQ + V V + ++
Sbjct: 65 RI-----TPRQQGVQALVLAPTRELAIQVAEAIQRYGQQRGITVLAVYGGQAYQQQIRS- 118
Query: 139 LLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPK 198
L + +++V TP R L + TLDL +++ V++DEAD + S G+ +D++ +L +P
Sbjct: 119 -LRQGVEVIVGTPGRLLDLMNQGTLDL-TTVRTVVLDEADEMLSMGFVEDIELILDRIPA 176
Query: 199 LYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYT 258
Q +L SAT+S+ VL L LR+P + + + + Y+++ Q+D K L
Sbjct: 177 ERQTMLFSATISKRVLGLSARYLRDPETVSITPKQLTGATIEQRYYLVNQQD-KVAALTR 235
Query: 259 LLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYD 318
L ++ + +IF T +L L LN +L AR + +F G
Sbjct: 236 LFEMETID-SALIFTRTRIGTGELANQLTSRGFPAEALNGDLSQDARIQVLNRFRNGQVK 294
Query: 319 VIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAG 378
V++A+D A RG+D +S+V NFD P D + Y+HR G
Sbjct: 295 VLVATDVAA-----------------------RGLDIDDISHVFNFDLPDDPEVYVHRVG 331
Query: 379 RTARGKNQGTALSFVS 394
RT R +G A+S ++
Sbjct: 332 RTGRAGREGIAISLLT 347
>gi|163751537|ref|ZP_02158759.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
benthica KT99]
gi|161328545|gb|EDP99698.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
benthica KT99]
Length = 444
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 125/385 (32%), Positives = 200/385 (51%), Gaps = 34/385 (8%)
Query: 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII 81
+F+ L+AI++ G+ E T +Q+ AIP I + +DVL A+TG+GKT AFA+P++QK+
Sbjct: 14 SFSFAPEILRAISECGYQEMTPVQQEAIPAIRRGQDVLASAQTGTGKTAAFALPILQKMF 73
Query: 82 NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLV 141
+ Q T+AL+L+P++EL Q+ NI + + DV + I V V Q L
Sbjct: 74 DNPMPTQRSNTRALILTPTRELAAQIADNISDYSKYI--DVSVLTIYGGVKVDSQAQKLK 131
Query: 142 ERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQ 201
DI+VATP R L HL+A L+L S++E +++DEAD + G+ D++ +++ + K Q
Sbjct: 132 RGTDIIVATPGRLLEHLQACNLNL-SNVEFLVLDEADRMLDMGFISDIQKIMQAVNKQRQ 190
Query: 202 AILASATLSEDVLSLKHLILRNPVILKL--EEPAIAPVSQLAHYHILAQEDEKATILYTL 259
+L SAT S V L + +L P ++ L + VSQ+ + ++ K +L L
Sbjct: 191 NLLFSATFSSAVKKLANDMLVKPKLISLNSQNSTADTVSQVVYP---VEQRRKRELLSEL 247
Query: 260 L-KLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYD 318
+ K N Q +IF T D KL L I++ V++ E R A+ +F +G
Sbjct: 248 IGKKNWQQ--VLIFTATRDAADKLVKELNLDGITSSVVHGEKAQGNRRRALREFKEGKVR 305
Query: 319 VIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAG 378
++A++ A RG+D Q + V+N+D P + Y+HR G
Sbjct: 306 ALVATEVAA-----------------------RGLDIQDLEYVVNYDLPFLAEDYVHRIG 342
Query: 379 RTARGKNQGTALSFVSLREQDLMND 403
RT R G A+S VS E+ + D
Sbjct: 343 RTGRAGKSGVAISLVSREEERTLYD 367
>gi|390571862|ref|ZP_10252096.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
terrae BS001]
gi|389936192|gb|EIM98086.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
terrae BS001]
Length = 513
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 115/379 (30%), Positives = 196/379 (51%), Gaps = 37/379 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++A+ +LG+ PT IQ++AIP +L D+L A+TG+GKT F +P++Q+++ +
Sbjct: 13 VRAVNELGYTSPTPIQQQAIPAVLNGGDLLAGAQTGTGKTAGFTLPILQRLLTMPPAPGG 72
Query: 90 QE-TKALVLSPSKELCNQLHKNIQE----LTMKCSRDVKCVDISEQVDVSVQEPLLVERP 144
+ +AL+L+P++EL Q+ ++++ L +K + V I+ Q+D L
Sbjct: 73 KRVVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIDA------LRRGV 126
Query: 145 DIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAIL 204
DIVVATP R L H++ KT+DL S LEI+++DEAD + G+ D+K VL LP Q +L
Sbjct: 127 DIVVATPGRLLDHMQQKTIDL-SHLEILVLDEADRMLDMGFIHDIKRVLAKLPPKRQNLL 185
Query: 205 ASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNL 264
SAT S+++ +L +L +P ++++ S H + ++ ++ + + + + N
Sbjct: 186 FSATFSDEIKALADNLLDSPALIEVARRNTTAESVAQKIHPVDRDRKREMLTHLIKQHNW 245
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
Q ++F T +L L + IS ++ AR A+ +F V++A+D
Sbjct: 246 FQ--VLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKNNTLQVLVATD 303
Query: 325 EKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384
A RGID + +V+NFD P + Y+HR GRT R
Sbjct: 304 IAA-----------------------RGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAG 340
Query: 385 NQGTALSFVSLREQDLMND 403
G A+S V + E L+ D
Sbjct: 341 ATGEAVSLVCVDELQLLKD 359
>gi|343087345|ref|YP_004776640.1| DEAD/DEAH box helicase [Cyclobacterium marinum DSM 745]
gi|342355879|gb|AEL28409.1| DEAD/DEAH box helicase domain protein [Cyclobacterium marinum DSM
745]
Length = 565
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 123/372 (33%), Positives = 196/372 (52%), Gaps = 42/372 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+ +G+ +P+ IQ + IPL+LQ DV+ +A+TG+GKT AF IP+I I
Sbjct: 17 LRAVEDMGYTQPSPIQAQTIPLLLQGADVIGQAQTGTGKTAAFGIPIIDSI-----DPNS 71
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVK--CVDISEQVDVSVQEPLLVERPDIV 147
++ +AL+L P++EL Q+ I +LT K +R + C+ E +D ++ L + IV
Sbjct: 72 KKPQALILCPTRELAVQVEGEIVKLT-KYNRKISSTCIYGGESIDRQIRS--LKKGVQIV 128
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
V TP R + H+ +TLDL S + I+++DEAD + G+ DD++ +L +P Q + SA
Sbjct: 129 VGTPGRIMDHMDRRTLDL-SQVGIIVLDEADEMLDMGFRDDIEKILSSMPIERQTVFFSA 187
Query: 208 TLSEDVLSLKHLILRNPVILKL--EEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLV 265
T+ + +L L +P I+K+ +E + +SQL + + K ++ L +NL
Sbjct: 188 TMPKPILELTRKYQTDPEIIKVLRKELTVENISQL---YFDVRSGLKTDLISRL--INLH 242
Query: 266 QGK-TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
Q K ++IF NT ++ L I L+ +L R + +F +G V++A+D
Sbjct: 243 QYKLSVIFCNTKRVTDEVTEELTAKGIPAEALHGDLSQAQRTKVMNKFRKGHCSVLVATD 302
Query: 325 EKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384
A RGID + V V N+D PLD + Y+HR GRT R
Sbjct: 303 VAA-----------------------RGIDVENVEAVFNYDLPLDEENYVHRIGRTGRAG 339
Query: 385 NQGTALSFVSLR 396
GTA+SFVS R
Sbjct: 340 RSGTAISFVSGR 351
>gi|443316249|ref|ZP_21045701.1| DNA/RNA helicase, superfamily II [Leptolyngbya sp. PCC 6406]
gi|442784157|gb|ELR94045.1| DNA/RNA helicase, superfamily II [Leptolyngbya sp. PCC 6406]
Length = 438
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 121/402 (30%), Positives = 205/402 (50%), Gaps = 37/402 (9%)
Query: 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII 81
T L L+A+ G+ PT IQ +AIPL+L+ KD++ A+TG+GKT F +P++ K+
Sbjct: 5 TLGLAAGILRAVEDQGYSTPTPIQAKAIPLVLEGKDLMASAQTGTGKTAGFTLPILHKLA 64
Query: 82 NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLV 141
+ + + +ALVL+P++EL Q+ ++I T ++ + V + Q L
Sbjct: 65 SAGRGQGRRPPRALVLTPTRELAAQVAESIA--TYGKYVPLRTAVVFGGVKIQPQIHKLQ 122
Query: 142 ERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQ 201
D++VATP R L H+ +T+DL S +E++++DEAD + G+ D++ +L LP Q
Sbjct: 123 RGVDVLVATPGRLLDHVGQRTVDL-SQVEVLVLDEADRMLDMGFIHDIRRLLNELPAERQ 181
Query: 202 AILASATLSEDVLSLKHLILRNPVILKL--EEPAIAPVSQLAHYHILAQEDEKATILYTL 259
++ SAT S ++ L ILR+PV++++ +SQ+ H + ++ ++ + Y +
Sbjct: 182 TLMFSATFSNEIKKLADDILRDPVLVEVAARNSTADKISQVVHP--VDRQRKRELLSYMI 239
Query: 260 LKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDV 319
+ N Q ++F T +L LE+ + T ++ AR A+ F +G V
Sbjct: 240 GQHNWQQ--VLVFTRTKHGANRLAEQLERDGLKTAAIHGNKSQGARTRALQDFKKGAVRV 297
Query: 320 IIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGR 379
++A+D A RG+D + +V+NF+ P + Y+HR GR
Sbjct: 298 LVATDIAA-----------------------RGLDIDHLPHVVNFELPNVSEDYVHRIGR 334
Query: 380 TARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDV 421
T R N G A+S VS E L+ S L +QDL DV
Sbjct: 335 TGRAGNTGQAVSLVSSEEYPLLR-----SIERLLKQDLPKDV 371
>gi|430749671|ref|YP_007212579.1| DNA/RNA helicase [Thermobacillus composti KWC4]
gi|430733636|gb|AGA57581.1| DNA/RNA helicase, superfamily II [Thermobacillus composti KWC4]
Length = 517
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 119/388 (30%), Positives = 195/388 (50%), Gaps = 44/388 (11%)
Query: 22 TFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQ 78
TF F + LQA+ ++G+ E T IQ +AIP+ + D++ +A+TG+GKT AF IP+I
Sbjct: 3 TFAEFGLEPKVLQAVTEMGFEESTPIQAKAIPIAMSGADLIGQAQTGTGKTAAFGIPLIS 62
Query: 79 KIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEP 138
KI + + ALV++P++EL Q+ + +L + ++ + I D+ Q
Sbjct: 63 KI-----PPEEERIVALVMTPTRELAIQVADELGKLAR--YKGIRTLPIYGGQDIGRQIR 115
Query: 139 LLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPK 198
L ++P I++ TP R L H+ KT+ L ++ V++DEAD + G+ +D+ +L +P+
Sbjct: 116 ALKKKPQIIIGTPGRLLDHINRKTIRL-DDVQTVVLDEADEMLDMGFMEDITTILSLVPE 174
Query: 199 LYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAP----VSQLAHYHILAQEDEKAT 254
Q +L SAT+ ++ L LRNP E ++ P + +I E EK
Sbjct: 175 ERQTMLFSATMPPNIQKLAQQFLRNP-----EHVSVIPKNITAPSIEQIYIEVHEREKFE 229
Query: 255 ILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQ 314
L LL + I+F T + +L L++ S L+ +L R + +F
Sbjct: 230 ALSRLLDMESPD-LAIVFGRTKRRVDELSEALQKRGYSADGLHGDLSQNQRDTVMRKFRD 288
Query: 315 GLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYI 374
G DV++A+D A RG+D V++VINFD P D + Y+
Sbjct: 289 GSIDVLVATDVAA-----------------------RGLDVSGVTHVINFDLPQDPESYV 325
Query: 375 HRAGRTARGKNQGTALSFVSLREQDLMN 402
HR GRT R +G A +FV+ RE D ++
Sbjct: 326 HRIGRTGRAGKEGVAYTFVTPREIDHLH 353
>gi|420428271|ref|ZP_14927306.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-17]
gi|393045930|gb|EJB46910.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-17]
Length = 491
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 191/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPE-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F +T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTHTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNAESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|86147794|ref|ZP_01066101.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio sp.
MED222]
gi|85834432|gb|EAQ52583.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio sp.
MED222]
Length = 412
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 122/380 (32%), Positives = 198/380 (52%), Gaps = 41/380 (10%)
Query: 24 TLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINL 83
T+ IP Q + +PT IQ+ IP I+ KDVL A+TGSGKT AF +P++ I +
Sbjct: 12 TVSAIPSQ------FNKPTEIQQAVIPTIIAEKDVLALAQTGSGKTLAFGLPLLNSIKH- 64
Query: 84 KQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVER 143
V E +A+++ P++EL +Q+ K ++ + + D+K V ++ VD+ +Q+ L+E+
Sbjct: 65 ----DVNELQAIIIVPTRELASQVAKALEPIA--TTLDIKTVTLTGGVDIEIQQQQLLEK 118
Query: 144 PDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAI 203
P +V+ATP R A ++ L+L + + +I+DEAD + G+ D++ ++ LPK +Q +
Sbjct: 119 PQLVIATPGRLHAVIQENKLEL-TQCKSLILDEADRLLDMGFWPDVQTIISALPKKHQTL 177
Query: 204 LASATLSEDVLSLKHLILRNPV-ILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKL 262
L SATL ++++S +L NPV + +E ++ V+ + L + KA L LL
Sbjct: 178 LFSATLPKELISQTEALLVNPVKVTTHQENSV--VAAIEETLYLVNKGSKAQALIALLNQ 235
Query: 263 NLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIA 322
+ + ++F+ D L L + KIS L+ + R A+ F G V+IA
Sbjct: 236 H-AWSQVLVFIGAKDNADALTKRLSKAKISVNALHGNKSQEEREQALESFKNGKTRVLIA 294
Query: 323 SDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTAR 382
+D A RGI + VINFD P Y+HR GRTAR
Sbjct: 295 TDVMA-----------------------RGIHIDQLPVVINFDLPSHSATYVHRVGRTAR 331
Query: 383 GKNQGTALSFVSLREQDLMN 402
+ G+A+S VS E D +N
Sbjct: 332 AGSTGSAISLVSHSETDYLN 351
>gi|57235067|ref|YP_180931.1| DEAD/DEAH box helicase [Dehalococcoides ethenogenes 195]
gi|57225515|gb|AAW40572.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Dehalococcoides
ethenogenes 195]
Length = 560
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 118/375 (31%), Positives = 196/375 (52%), Gaps = 35/375 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
+ + G+ EPT IQ +AIP IL+ DV+ A+TG+GKT A+A+P+IQK+++ +
Sbjct: 13 MAGVRACGYQEPTPIQAQAIPPILEGHDVIGLAQTGTGKTAAYALPVIQKMLSTPRG--- 69
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ LVL+P++EL Q+ ++ + L + ++ I V++ Q L D+VVA
Sbjct: 70 -RVRTLVLAPTRELACQIAESFRSLGQRAR--IRECSIYGGVNMDQQIRRLRSGVDVVVA 126
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
P R L H+ T+D+ +E +IIDEAD +F G++ D++++LK L + +Q +L SAT+
Sbjct: 127 CPGRLLDHIWRGTIDI-CGVETLIIDEADRMFDMGFQPDIQSILKCLVQPHQTLLFSATM 185
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+V L NPV +++ AP S ++H + +K +L +LK +
Sbjct: 186 PPEVRKLTLETQTNPVTIQIG--TQAPASSVSHSVYPVKNHQKTPLLIEILKTTETK-SV 242
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQ-FNQGLYDVIIASDEKAL 328
+IF T L + + +T L L ++ R HAV + F +G + +++A+D A
Sbjct: 243 LIFARTKYGAENLADEISRAGFTTASLQGNL-SQNRRHAVMEGFRRGNFKILVATDIAA- 300
Query: 329 ETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGT 388
RG+D +S+VIN+D P + Y HR GRT R G
Sbjct: 301 ----------------------RGLDIDHISHVINYDMPDTPEDYTHRIGRTGRFDRTGQ 338
Query: 389 ALSFVSLREQDLMND 403
ALS V+ R+ D++ D
Sbjct: 339 ALSLVTGRDGDMVRD 353
>gi|16799933|ref|NP_470201.1| hypothetical protein lin0859 [Listeria innocua Clip11262]
gi|217965039|ref|YP_002350717.1| DEAD/DEAH box helicase [Listeria monocytogenes HCC23]
gi|290892943|ref|ZP_06555933.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J2-071]
gi|386026184|ref|YP_005946960.1| putative ATP-dependent RNA helicase [Listeria monocytogenes M7]
gi|16413310|emb|CAC96091.1| lin0859 [Listeria innocua Clip11262]
gi|217334309|gb|ACK40103.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Listeria monocytogenes HCC23]
gi|290557519|gb|EFD91043.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J2-071]
gi|336022765|gb|AEH91902.1| putative ATP-dependent RNA helicase [Listeria monocytogenes M7]
Length = 516
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 110/373 (29%), Positives = 199/373 (53%), Gaps = 43/373 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++++ ++G+ E T IQE+ IPL L KD++ +A+TG+GKT AF +PMI KI Q
Sbjct: 14 VKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHKIDQKSNNVQ- 72
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
AL+++P++EL Q+ + + +L+ + V+ + + D+S Q L + P IVV
Sbjct: 73 ----ALIIAPTRELAIQVSEELYKLS--YDKHVRVLAVYGGSDISRQIRSLKKNPQIVVG 126
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H+ +TL L +E +++DEAD + + G+ DD++ +LK +P Q +L SAT+
Sbjct: 127 TPGRILDHINRRTLKL-DHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLLFSATM 185
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLL-----KLNL 264
+ + + + +P +++++ + + + + + E EK +L LL +L +
Sbjct: 186 PDPIRRIGERFMHSPELIRIKAKEMTALL-IEQFFVKVHEKEKFDVLSRLLDVQAPELAI 244
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
V G+T V+ + + ++ Y+ + ++ +L R + +F +G DV++A+D
Sbjct: 245 VFGRTKRRVDELSRALDMRGYVAEG------IHGDLTQAKRMSVLRKFKEGKIDVLVATD 298
Query: 325 EKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384
A RG+D V++V N+D P D + Y+HR GRT R
Sbjct: 299 VAA-----------------------RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG 335
Query: 385 NQGTALSFVSLRE 397
+G A++FV RE
Sbjct: 336 KEGMAITFVQPRE 348
>gi|420453086|ref|ZP_14951925.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-8]
gi|393070694|gb|EJB71483.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-8]
Length = 491
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPE-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|422418363|ref|ZP_16495318.1| ATP-dependent RNA helicase DeaD [Listeria seeligeri FSL N1-067]
gi|313634128|gb|EFS00790.1| ATP-dependent RNA helicase DeaD [Listeria seeligeri FSL N1-067]
Length = 526
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 109/373 (29%), Positives = 202/373 (54%), Gaps = 43/373 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++++ ++G+ E T IQE+ IPL L KD++ +A+TG+GKT AF +PMI KI + Q
Sbjct: 16 VKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHKIDQKSNSVQ- 74
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
AL+++P++EL Q+ + + +L+ + V+ + + D+S Q L + P IVV
Sbjct: 75 ----ALIIAPTRELAIQVSEELYKLS--YDKHVRVLAVYGGSDISRQIRSLKKFPQIVVG 128
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H+ +TL L+ ++E +++DEAD + + G+ DD++ +LK +P Q +L SAT+
Sbjct: 129 TPGRILDHINRRTLKLE-NVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLLFSATM 187
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLL-----KLNL 264
+ + + + +P +++++ + + + + + E EK +L LL +L +
Sbjct: 188 PDPIRRIGERFMHSPELIRIKAKEMTAL-LIEQFFVKVHEKEKFDVLSRLLDVQAPELAI 246
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
+ G+T V+ + + ++ Y+ + ++ +L R + +F +G DV++A+D
Sbjct: 247 IFGRTKRRVDELSRALDMRGYVAEG------IHGDLTQAKRMSVLRKFKEGKIDVLVATD 300
Query: 325 EKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384
A RG+D V++V N+D P D + Y+HR GRT R
Sbjct: 301 VAA-----------------------RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG 337
Query: 385 NQGTALSFVSLRE 397
+G A++FV RE
Sbjct: 338 KEGMAITFVQPRE 350
>gi|226223484|ref|YP_002757591.1| ATP-dependent RNA helicase [Listeria monocytogenes serotype 4b str.
CLIP 80459]
gi|386731620|ref|YP_006205116.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes 07PF0776]
gi|417314932|ref|ZP_12101623.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes J1816]
gi|417317100|ref|ZP_12103725.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes J1-220]
gi|225875946|emb|CAS04650.1| Putative ATP-dependent RNA helicase [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|328467139|gb|EGF38229.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes J1816]
gi|328475471|gb|EGF46234.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes J1-220]
gi|384390378|gb|AFH79448.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes 07PF0776]
Length = 517
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 110/373 (29%), Positives = 199/373 (53%), Gaps = 43/373 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++++ ++G+ E T IQE+ IPL L KD++ +A+TG+GKT AF +PMI KI Q
Sbjct: 14 VKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHKIDQKSNNVQ- 72
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
AL+++P++EL Q+ + + +L+ + V+ + + D+S Q L + P IVV
Sbjct: 73 ----ALIIAPTRELAIQVSEELYKLS--YDKHVRVLAVYGGSDISRQIRSLKKNPQIVVG 126
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H+ +TL L +E +++DEAD + + G+ DD++ +LK +P Q +L SAT+
Sbjct: 127 TPGRILDHINRRTLKL-DHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLLFSATM 185
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLL-----KLNL 264
+ + + + +P +++++ + + + + + E EK +L LL +L +
Sbjct: 186 PDPIRRIGERFMHSPELIRIKAKEMTALL-IEQFFVKVHEKEKFDVLSRLLDVQAPELAI 244
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
V G+T V+ + + ++ Y+ + ++ +L R + +F +G DV++A+D
Sbjct: 245 VFGRTKRRVDELSRALDMRGYVAEG------IHGDLTQAKRMSVLRKFKEGKIDVLVATD 298
Query: 325 EKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384
A RG+D V++V N+D P D + Y+HR GRT R
Sbjct: 299 VAA-----------------------RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG 335
Query: 385 NQGTALSFVSLRE 397
+G A++FV RE
Sbjct: 336 KEGMAITFVQPRE 348
>gi|313147103|ref|ZP_07809296.1| ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12]
gi|424663494|ref|ZP_18100531.1| hypothetical protein HMPREF1205_03880 [Bacteroides fragilis HMW
616]
gi|313135870|gb|EFR53230.1| ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12]
gi|404577184|gb|EKA81922.1| hypothetical protein HMPREF1205_03880 [Bacteroides fragilis HMW
616]
Length = 418
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 117/373 (31%), Positives = 205/373 (54%), Gaps = 36/373 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+ + + E T IQE+AIP+IL+ +D++ A+TG+GKT AF +P++ + L +
Sbjct: 13 LEALDAMRFEECTPIQEQAIPVILEGRDLIAVAQTGTGKTAAFLLPILNR---LSEGGHP 69
Query: 90 QET-KALVLSPSKELCNQLHKNIQELT--MKCSRDVKCVDISEQVDVSVQEPLLVERPDI 146
++ +++SP++EL Q+ + ++ + M S V ++ + Q+ L+ D+
Sbjct: 70 EDAINCVIMSPTRELAQQIDQQMEGFSYFMPVS-SVAVYGGNDGILFEQQKKGLMLGADV 128
Query: 147 VVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
V+ATP R +AHL +DL S + I+DEAD + G+ +D+ ++K+LPK Q I+ S
Sbjct: 129 VIATPGRLIAHLSLGYVDL-SRVSYFILDEADRMLDMGFYEDIMQIVKYLPKERQTIMFS 187
Query: 207 ATLSEDVLSLKHLILRNPVILKLEEPAIA-PVSQLAHYHILAQEDEKATILYTLLKLNLV 265
AT+ + L + IL NPV +KL A++ P ++ + E++K I+ +L +
Sbjct: 188 ATMPSKIQQLANTILNNPVEVKL---AVSKPAEKIVQAAYVCYENQKLGIVRSLFAEEVP 244
Query: 266 QGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE 325
+ + IIF ++ K ++ L+ K++ ++S+L R +++F G ++++A+D
Sbjct: 245 E-RVIIFASSKLKVKEVAKALKMMKLNVGEMHSDLEQAQREFIMHEFKSGRINILVATDI 303
Query: 326 KALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKN 385
VSRGID + VINFD P D + Y+HR GRTAR N
Sbjct: 304 -----------------------VSRGIDIDDIRLVINFDVPHDSEDYVHRIGRTARANN 340
Query: 386 QGTALSFVSLREQ 398
G AL+FV+ +EQ
Sbjct: 341 DGVALTFVNEKEQ 353
>gi|420524110|ref|ZP_15022520.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-13b]
gi|393133269|gb|EJC33686.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-13b]
Length = 491
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPE-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|430809219|ref|ZP_19436334.1| RNA helicase [Cupriavidus sp. HMR-1]
gi|429498363|gb|EKZ96873.1| RNA helicase [Cupriavidus sp. HMR-1]
Length = 498
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 118/391 (30%), Positives = 202/391 (51%), Gaps = 38/391 (9%)
Query: 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII 81
+F L L+A+ + G+ +PT IQ +AIP++L KDV+ A+TG+GKT FA+P+IQ+++
Sbjct: 19 SFGLDPRVLRALTEQGYTKPTPIQAQAIPVVLLGKDVMGAAQTGTGKTAGFALPIIQRLL 78
Query: 82 ---NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEP 138
N + +AL+L+P++EL +Q++ N+ D++ + VD++ Q
Sbjct: 79 PLANASASPARHPVRALMLTPTRELADQVYDNVARYAKHT--DLRSTVVFGGVDMNPQTD 136
Query: 139 LLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPK 198
L +I+VATP R L H++ K+++L S ++++++DEAD + G+ D++ ++ LP
Sbjct: 137 ALRRGVEILVATPGRLLDHVQQKSVNL-SQVQMLVLDEADRMLDMGFLPDLQRIINLLPA 195
Query: 199 LYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIA--PVSQLAHYHILAQEDEKATIL 256
Q +L SAT S ++ L L+ PV +++ V Q+ Y + Q+ K +
Sbjct: 196 QRQTLLFSATFSPEIKKLASSYLKQPVTIEVARSNSTNENVRQVV-YQV--QDGHKQAAV 252
Query: 257 YTLLKLNLVQGKT---IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFN 313
LLK + ++ I+FVN+ C +L +LE+ I+ ++ + R + F
Sbjct: 253 VHLLKQRANEQQSRQCIVFVNSKIGCSRLARHLEREGINAAAIHGDKTQTERMQTLDGFK 312
Query: 314 QGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCY 373
G D ++A+D A RG+D + VINFD P + Y
Sbjct: 313 NGTIDALVATDVAA-----------------------RGLDIPAMPCVINFDLPFSAEDY 349
Query: 374 IHRAGRTARGKNQGTALS-FVSLREQDLMND 403
+HR GRT R G ALS FV + L+ D
Sbjct: 350 VHRIGRTGRAGASGDALSIFVPGNDDRLLAD 380
>gi|331006491|ref|ZP_08329791.1| Cold-shock DEAD-box protein A [gamma proteobacterium IMCC1989]
gi|330419691|gb|EGG94057.1| Cold-shock DEAD-box protein A [gamma proteobacterium IMCC1989]
Length = 573
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 200/383 (52%), Gaps = 36/383 (9%)
Query: 22 TFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQ 78
+F+ +P L+ + +LG+ P+ IQ +IP+I + +D+L +A+TG+GKT AFA+P++
Sbjct: 11 SFSELNLPEAILKTLVELGYETPSPIQAASIPIIQEGRDLLGQAQTGTGKTAAFALPLLS 70
Query: 79 KIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEP 138
KI K+ Q+ LVL+P++EL Q+ + Q + S V + + D +++
Sbjct: 71 KIDPTKKHPQL-----LVLAPTRELAIQVAEAFQTYSRHMSCTVLPIYGGQSYDNQLRQ- 124
Query: 139 LLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPK 198
L I+V TP R + H++ KTL L LE +++DEAD + G+ DD++ +L+ PK
Sbjct: 125 -LKRGTQIIVGTPGRVMDHIRRKTLKL-DQLEALVLDEADEMLRMGFIDDVEWILEHTPK 182
Query: 199 LYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYT 258
Q L SAT+ +++ + L NP +K+E + + I+ ++K
Sbjct: 183 SRQIALFSATMPKEIKKVADKYLVNPKHIKIETKTSTATTIRQRFSIV-NRNQKLDAFTR 241
Query: 259 LLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYD 318
+L++ G I+FV T +L L S LN ++P R + V + +G D
Sbjct: 242 ILEVEDFDG-VIVFVRTKVATLELAEKLSARGHSCAALNGDIPQNQRENIVEKLKRGTLD 300
Query: 319 VIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAG 378
++IA+D V+RG+D + +S+VIN+D PLD + Y+HR G
Sbjct: 301 ILIATDV-----------------------VARGLDVKRISHVINYDIPLDTESYVHRIG 337
Query: 379 RTARGKNQGTALSFVSLREQDLM 401
RT R G A+ FV+ RE+ L+
Sbjct: 338 RTGRAGRSGEAILFVTSRERHLL 360
>gi|422412306|ref|ZP_16489265.1| dead-box ATP-dependent rna helicase ydbr [Listeria innocua FSL
S4-378]
gi|313619814|gb|EFR91407.1| dead-box ATP-dependent rna helicase ydbr [Listeria innocua FSL
S4-378]
Length = 518
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 110/373 (29%), Positives = 199/373 (53%), Gaps = 43/373 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++++ ++G+ E T IQE+ IPL L KD++ +A+TG+GKT AF +PMI KI Q
Sbjct: 16 VKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHKIDQKNNNVQ- 74
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
AL+++P++EL Q+ + + +L+ + V+ + + D+S Q L + P IVV
Sbjct: 75 ----ALIIAPTRELAIQVSEELYKLS--YDKHVRVLAVYGGSDISRQIRSLKKNPQIVVG 128
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H+ +TL L +E +++DEAD + + G+ DD++ +LK +P Q +L SAT+
Sbjct: 129 TPGRILDHINRRTLKL-DHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLLFSATM 187
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLL-----KLNL 264
+ + + + +P +++++ + + + + + E EK +L LL +L +
Sbjct: 188 PDPIRRIGERFMHSPELIRIKAKEMTALL-IEQFFVKVHEKEKFDVLSRLLDVQAPELAI 246
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
V G+T V+ + + ++ Y+ + ++ +L R + +F +G DV++A+D
Sbjct: 247 VFGRTKRRVDELSRALDMRGYVAEG------IHGDLTQAKRMSVLRKFKEGKIDVLVATD 300
Query: 325 EKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384
A RG+D V++V N+D P D + Y+HR GRT R
Sbjct: 301 VAA-----------------------RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG 337
Query: 385 NQGTALSFVSLRE 397
+G A++FV RE
Sbjct: 338 KEGMAITFVQPRE 350
>gi|420498815|ref|ZP_14997372.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-26]
gi|393152794|gb|EJC53090.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-26]
Length = 491
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPE-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|420488482|ref|ZP_14987082.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-11]
gi|420522411|ref|ZP_15020835.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-11b]
gi|393109053|gb|EJC09585.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-11]
gi|393129368|gb|EJC29802.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-11b]
Length = 491
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPE-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|420438295|ref|ZP_14937269.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-29]
gi|420519043|ref|ZP_15017487.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
H-5b]
gi|393055895|gb|EJB56807.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-29]
gi|393128135|gb|EJC28579.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
H-5b]
Length = 491
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPE-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|420411610|ref|ZP_14910742.1| ATP-dependent RNA helicase [Helicobacter pylori NQ4228]
gi|393030399|gb|EJB31478.1| ATP-dependent RNA helicase [Helicobacter pylori NQ4228]
Length = 492
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 191/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPK-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F+ T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFMRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|421882169|ref|ZP_16313452.1| Cold-shock DEAD-box protein A [Helicobacter bizzozeronii CCUG
35545]
gi|375315618|emb|CCF81448.1| Cold-shock DEAD-box protein A [Helicobacter bizzozeronii CCUG
35545]
Length = 434
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 108/359 (30%), Positives = 188/359 (52%), Gaps = 34/359 (9%)
Query: 36 LGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKAL 95
+G+ +P+ IQE+AIP +L+ KDV+ +A+TG+GKT AFA+P+IQ NLK ++ AL
Sbjct: 1 MGFTQPSPIQEKAIPAVLEGKDVIAQAQTGTGKTAAFALPIIQ---NLKNDKSIE---AL 54
Query: 96 VLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARAL 155
V++P++EL Q+ + +L CV + + + LL P +++ATP R L
Sbjct: 55 VITPTRELAMQISDEVFKLGKNSRTRTICVYGGQSIKKQCE--LLERNPQVMIATPGRLL 112
Query: 156 AHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSEDVLS 215
HLK K L S ++V++DE+D + G+ DD++ + +LP Q +L SAT+ +
Sbjct: 113 DHLKNKRLK-NFSPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPPPIRD 171
Query: 216 LKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTIIFVNT 275
L + IL++P+ + + + ++++ + + I+ L K N K+IIF+
Sbjct: 172 LANKILQDPISIHIAPTHVTNTDISQRFYVINEHERNEAIMRLLDKEN--HTKSIIFMRM 229
Query: 276 VDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINS 335
+ +L +L + L+ ++ +AR ++ F DV++A+D
Sbjct: 230 KREVDELHQFLSAKGYKSTPLHGDMEQRARRESIQAFKTKRADVLVATDV---------- 279
Query: 336 TNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVS 394
SRG+D VS+V N+ PL+ + YIHR GRT R +G A++ V+
Sbjct: 280 -------------ASRGLDISDVSHVFNYHLPLNTESYIHRIGRTGRAGKKGVAITLVT 325
>gi|226288804|gb|EEH44316.1| ATP-dependent rRNA helicase RRP3 [Paracoccidioides brasiliensis
Pb18]
Length = 482
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 122/366 (33%), Positives = 185/366 (50%), Gaps = 35/366 (9%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ 90
+A LG+ PT IQ AIPL LQ +D++ A TGSGKT AFA+P++Q +++ + Q
Sbjct: 69 EACEALGYKTPTPIQTEAIPLALQGRDLIGLAETGSGKTAAFALPILQALMD-----KPQ 123
Query: 91 ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVAT 150
LVL+P++EL Q+ + + L S V+C I +D+ Q L ++P I+VAT
Sbjct: 124 SLFGLVLAPTRELAYQISEAFEALGSLIS--VRCAVIVGGMDMVPQAIALGKKPHIIVAT 181
Query: 151 PARALAHLK-AKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
P R L HL+ K L+ +L+ +++DEAD + + + +LK LP+ + L SAT+
Sbjct: 182 PGRLLDHLENTKGFSLR-NLKYLVMDEADRLLDLDFGPILDKILKVLPRERRTYLFSATM 240
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
S V SL+ L NP+ + + VS L + K +Y + LN G++
Sbjct: 241 SSKVESLQRASLSNPLRVSISSSKYQTVSTLLQTFLFIPHKYKD--IYLVYLLNEFAGQS 298
Query: 270 -IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL 328
IIF TV++ +L + L L+ +L R A+ +F D+++A+D A
Sbjct: 299 AIIFTRTVNETQRLAILLRALGFGAIPLHGQLSQSYRLGALGKFRSRSRDILVATDVAA- 357
Query: 329 ETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGT 388
RG+D V V+NFD P D + YIHR GRTAR G
Sbjct: 358 ----------------------RGLDIPSVDVVLNFDLPPDSKTYIHRVGRTARAGKSGH 395
Query: 389 ALSFVS 394
A SFV+
Sbjct: 396 AFSFVT 401
>gi|196250549|ref|ZP_03149239.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. G11MC16]
gi|196209898|gb|EDY04667.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. G11MC16]
Length = 467
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 112/373 (30%), Positives = 203/373 (54%), Gaps = 43/373 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++AI ++G+ E T IQ + IPL LQNKDV+ +A+TG+GKT AF IP+++K +++K A
Sbjct: 14 MKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIVEK-VDVKNGA-- 70
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ALV++P++EL Q+ + + ++ + V+ + I D+ Q L + P ++V
Sbjct: 71 --IQALVVAPTRELAIQVSEELYKIG--AVKRVRVLPIYGGQDIERQIRALKKHPHVIVG 126
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + H+ TL L+ + V++DEAD + + G+ +D++A+L+ +P Q +L SAT+
Sbjct: 127 TPGRIIDHINRGTLRLE-HVRTVVLDEADEMLNMGFIEDIEAILRHVPTERQTLLFSATM 185
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLL-----KLNL 264
+ + + + +P ++K++ + V + Y++ E +K IL LL +L +
Sbjct: 186 PDPIRRIAERFMNDPELVKVKAKEMT-VPNIQQYYLEVHEKKKFDILTRLLDIQAPELAI 244
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
V G+T V+ + + L+ Y + ++ +L R + +F +G ++++A+D
Sbjct: 245 VFGRTKRRVDELAEALNLRGYAAEG------IHGDLSQAKRLSVLRKFKEGSIEILVATD 298
Query: 325 EKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384
A RG+D V++V NFD P D + Y+HR GRT R
Sbjct: 299 VAA-----------------------RGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAG 335
Query: 385 NQGTALSFVSLRE 397
G A++FV+ RE
Sbjct: 336 KTGVAMTFVTPRE 348
>gi|420527527|ref|ZP_15025921.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-25c]
gi|420529549|ref|ZP_15027936.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-25d]
gi|393134653|gb|EJC35062.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-25c]
gi|393137318|gb|EJC37704.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-25d]
Length = 491
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEVQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPE-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|420495583|ref|ZP_14994147.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-23]
gi|393111894|gb|EJC12415.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-23]
Length = 492
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 114/385 (29%), Positives = 197/385 (51%), Gaps = 41/385 (10%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPK-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDV---- 316
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 317 -------------------ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS-------LREQDLMNDGTAL 407
++ V+ LR Q ++ G L
Sbjct: 358 ITLVTPLEYKELLRMQKEIDSGIEL 382
>gi|420471737|ref|ZP_14970433.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-18]
gi|420476932|ref|ZP_14975594.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-23]
gi|420478711|ref|ZP_14977363.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-34]
gi|393091092|gb|EJB91724.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-18]
gi|393094537|gb|EJB95145.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-23]
gi|393096266|gb|EJB96864.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-34]
Length = 491
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPE-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|282599579|ref|ZP_05971084.2| ATP-dependent RNA helicase RhlE [Providencia rustigianii DSM 4541]
gi|282568585|gb|EFB74120.1| ATP-dependent RNA helicase RhlE [Providencia rustigianii DSM 4541]
Length = 457
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 113/375 (30%), Positives = 198/375 (52%), Gaps = 29/375 (7%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AI +LG+ PT IQ++AIP +L D+L A+TG+GKT F +P++QK+++ ++
Sbjct: 21 LRAINELGYDSPTPIQQQAIPAVLAGNDLLASAQTGTGKTAGFTLPILQKLVDAPRSGNN 80
Query: 90 QE-TKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
+ +AL+L+P++EL Q+ +N++E + +++ + V ++ Q L D+++
Sbjct: 81 RRPIRALILTPTRELAAQVAENVKEYSRHL--NIRSFVVFGGVSINPQMMKLRSGVDVLI 138
Query: 149 ATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
ATP R L +DL S +EI+++DEAD + G+ D++ V+ LPK Q +L SAT
Sbjct: 139 ATPGRLLDLEHQNAVDL-SQVEILVLDEADRMLDMGFIHDIRRVITKLPKKRQNLLFSAT 197
Query: 209 LSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGK 268
S+D+ L +L NPV +++ P + Q+ Y L + KA +L ++ Q +
Sbjct: 198 FSDDIKQLASKLLNNPVSIEV-APRNSASEQVTQYVHLVDKKRKAELLSFMIGRENWQ-Q 255
Query: 269 TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL 328
++F T +L +L + I + ++ AR A+ F G V++A+D A
Sbjct: 256 VLVFTRTKHGANRLAEHLNKDGIKSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAA- 314
Query: 329 ETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGT 388
RG+D + + +V+NF+ P + Y+HR GRT R + G
Sbjct: 315 ----------------------RGLDIEQLPHVVNFELPNVAEDYVHRIGRTGRAEATGQ 352
Query: 389 ALSFVSLREQDLMND 403
A+S V + E L+ D
Sbjct: 353 AISLVCIDEVKLLKD 367
>gi|420530777|ref|ZP_15029152.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-28b]
gi|393138803|gb|EJC39184.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-28b]
Length = 492
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPE-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|420461541|ref|ZP_14960331.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-3]
gi|393081521|gb|EJB82241.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-3]
Length = 491
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPE-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|420448278|ref|ZP_14947158.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-44]
gi|393065632|gb|EJB66460.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-44]
Length = 491
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMHLLDTQAPE-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|420429945|ref|ZP_14928975.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-20]
gi|393048564|gb|EJB49531.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-20]
Length = 491
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPE-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|319944884|ref|ZP_08019146.1| ATP-dependent RNA helicase RhlE [Lautropia mirabilis ATCC 51599]
gi|319741454|gb|EFV93879.1| ATP-dependent RNA helicase RhlE [Lautropia mirabilis ATCC 51599]
Length = 489
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 119/381 (31%), Positives = 201/381 (52%), Gaps = 43/381 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII-NLKQTAQ 88
L+A+A +G+ PT IQ +AIP++L +D+L A+TG+GKT F +P++Q+++ N QT +
Sbjct: 25 LRALADVGYTNPTPIQAKAIPVVLTGRDLLAAAQTGTGKTAGFTLPILQRLLDNPMQTRK 84
Query: 89 VQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
+ L+L+P++EL Q+ ++++ K +R ++ V I V ++ Q L + DI+V
Sbjct: 85 PGRPRCLILTPTRELTAQVEESVKAYA-KYTR-IRSVLIFGGVSINPQIQALRQPVDILV 142
Query: 149 ATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
ATP R L H++ T+DL S +EI ++DEAD + G+ D++ V+ LP Q +L SAT
Sbjct: 143 ATPGRLLDHVQQGTVDL-SGVEIFVLDEADRMLDMGFIHDIRRVIAKLPAKRQNLLFSAT 201
Query: 209 LSEDVLSLKHLILRNPVILKLEEPAIAP-------VSQLAHYHILAQEDEKATILYTLLK 261
S ++ SL H +L NP E +AP V+Q A H++ + ++A + Y +
Sbjct: 202 FSPEIRSLAHGLLDNPA-----EVDVAPRNTASELVAQSA--HLVPKTRKRALLSYLIGS 254
Query: 262 LNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVII 321
Q ++F T +L L + I ++ AR A+ +F G V++
Sbjct: 255 RRWKQ--VLVFTKTKHGANRLAEQLGKDGIEAMAIHGNKSQGARTRALSRFKDGSLPVLV 312
Query: 322 ASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTA 381
A+D A RG+D + +V+N++ P + Y+HR GRT
Sbjct: 313 ATDIAA-----------------------RGLDIDELPHVVNYELPNVPEDYVHRIGRTG 349
Query: 382 RGKNQGTALSFVSLREQDLMN 402
R ++GTA+S V E L+
Sbjct: 350 RAGHEGTAVSLVDREEMKLLT 370
>gi|160940589|ref|ZP_02087933.1| hypothetical protein CLOBOL_05484 [Clostridium bolteae ATCC
BAA-613]
gi|158436549|gb|EDP14316.1| hypothetical protein CLOBOL_05484 [Clostridium bolteae ATCC
BAA-613]
Length = 490
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 117/367 (31%), Positives = 191/367 (52%), Gaps = 39/367 (10%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII---NLKQTA 87
+ +A LG+ PT +QE +P +L ++V+VR++TG+GKT AFAIP+ ++I+ NL Q
Sbjct: 24 ETLALLGYEHPTRVQEEVLPHVLAGRNVVVRSQTGTGKTAAFAIPVCEQIVWEENLPQ-- 81
Query: 88 QVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
ALVL PS+EL Q+ + I + K V V +D +Q L ++ IV
Sbjct: 82 ------ALVLEPSRELAVQVSQEIFRIGRKKRLKVPAVFGGFPIDKQIQ--TLRQKTHIV 133
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
V TP R + H++ +L L + + ++IDEADL+ G+ D+++ ++ LP+ Q +L SA
Sbjct: 134 VGTPGRVMDHVRRGSLKL-TGVRYLVIDEADLMLDMGFMDEVRQIVGLLPEKRQTLLFSA 192
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
TL EDV +L +++ V + LE+ P+ + +AQ+ + L+K N
Sbjct: 193 TLDEDVKNLAEETVKDAVSVFLEQEGETPLPIRQSVYGVAQDQKYTAFKRVLMKEN--PE 250
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
+ +IF T + L L + +I +++ ++ K R V F +G + +IA+D A
Sbjct: 251 RAMIFCGTREMVQVLFQKLRRDRIFCGMIHGDMEQKERLKNVDAFRRGGFRYLIATDVAA 310
Query: 328 LETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQG 387
RGIDF+ V V+N+DFP+ + Y+HR GRT R G
Sbjct: 311 -----------------------RGIDFEDVGLVVNYDFPMGRETYVHRIGRTGRNGKAG 347
Query: 388 TALSFVS 394
A S V+
Sbjct: 348 RAASLVT 354
>gi|68473179|ref|XP_719395.1| hypothetical protein CaO19.7635 [Candida albicans SC5314]
gi|74656492|sp|Q5ACK7.1|DRS1_CANAL RecName: Full=ATP-dependent RNA helicase DRS1
gi|46441210|gb|EAL00509.1| hypothetical protein CaO19.7635 [Candida albicans SC5314]
gi|238880416|gb|EEQ44054.1| hypothetical protein CAWG_02313 [Candida albicans WO-1]
Length = 613
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 117/375 (31%), Positives = 197/375 (52%), Gaps = 38/375 (10%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ IA+L + +PT IQ +IP+ L KD++ A+TGSGKTGA+ IP+I++++ T+
Sbjct: 142 LKGIAELKFTKPTPIQSASIPIALLGKDIVAGAQTGSGKTGAYMIPIIERLLYKPSTS-- 199
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQV---DVSVQEPLLVERPDI 146
TK ++L+P++EL Q++ E K S V ++I V ++ QE L RPDI
Sbjct: 200 --TKVIILTPTRELALQVY----EFGKKLSHHVNNLNIGLAVGGLNLRQQEEQLKTRPDI 253
Query: 147 VVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPK-LYQAILA 205
V+ATP R + H++ +++++IDEAD + G++D++ +L +PK Q +L
Sbjct: 254 VIATPGRLIDHIRNSPSFSVQDIQVLVIDEADRMLEEGFQDELTEILSLIPKHKRQTLLF 313
Query: 206 SATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDE-KATILYTLLKLNL 264
SAT++ + L L L+ PV + ++ P L + + + D+ K +LY LLK
Sbjct: 314 SATMNTRIQDLIQLSLQKPVRIMIDPPKSVASKLLQQFVRIRKRDQLKPALLYQLLK--G 371
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
V + ++FV + ++L++ L + L+ L + R V F
Sbjct: 372 VSSRVVVFVARKETAHRLRIVLGLLGLKVSELHGALTQEQRLQNVKNF------------ 419
Query: 325 EKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384
K+LE P + T+ +RG+D + VIN+D P + Y+HR GRTAR
Sbjct: 420 -KSLEVPVLICTDL----------AARGLDIPKIELVINYDMPKTFEIYLHRVGRTARAG 468
Query: 385 NQGTALSFVSLREQD 399
GT+++FV Q+
Sbjct: 469 RDGTSITFVGESSQE 483
>gi|420512248|ref|ZP_15010731.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-2b]
gi|393157311|gb|EJC57572.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-2b]
Length = 492
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPE-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|420464946|ref|ZP_14963713.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-6]
gi|393082433|gb|EJB83149.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-6]
Length = 491
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 191/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPK-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F +T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTHTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|295677616|ref|YP_003606140.1| DEAD/DEAH box helicase [Burkholderia sp. CCGE1002]
gi|295437459|gb|ADG16629.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
Length = 518
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 115/379 (30%), Positives = 197/379 (51%), Gaps = 37/379 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++A+ +LG+ PT IQ +AIP +L D+L A+TG+GKT F +P++Q++ ++ A
Sbjct: 13 VRAVNELGYTSPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPILQRLNSMAPAAGG 72
Query: 90 QE-TKALVLSPSKELCNQLHKNIQE----LTMKCSRDVKCVDISEQVDVSVQEPLLVERP 144
+ +AL+L+P++EL Q+ ++++ L +K + V I+ Q+D L
Sbjct: 73 KRVVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIDA------LKRGV 126
Query: 145 DIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAIL 204
DIVVATP R L H++ KT+DL S LEI+++DEAD + G+ D+K VL LP Q +L
Sbjct: 127 DIVVATPGRLLDHMQQKTIDL-SHLEILVLDEADRMLDMGFIHDIKRVLAKLPPKRQNLL 185
Query: 205 ASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNL 264
SAT S+++ +L +L +P ++++ + H + ++ ++ + + + + +
Sbjct: 186 FSATFSDEIKALADSLLDSPALIEVARRNTTAETVAQKIHPVDRDRKRELLTHLIRQHSW 245
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
Q ++F T +L L + IS ++ AR A+ +F G V++A+D
Sbjct: 246 FQ--VLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKDGTLQVLVATD 303
Query: 325 EKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384
A RGID + +V+NFD P + Y+HR GRT R
Sbjct: 304 IAA-----------------------RGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAG 340
Query: 385 NQGTALSFVSLREQDLMND 403
G A+S V + E L+ D
Sbjct: 341 ATGEAVSLVCVDELQLLKD 359
>gi|119775874|ref|YP_928614.1| ATP-dependent RNA helicase SrmB [Shewanella amazonensis SB2B]
gi|119768374|gb|ABM00945.1| superfamily II DNA and RNA helicase-like protein [Shewanella
amazonensis SB2B]
Length = 613
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 116/365 (31%), Positives = 184/365 (50%), Gaps = 29/365 (7%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ +G PT IQ IPL ++ +D+L RA TG+GKT +F +P +Q +I+ +
Sbjct: 13 LESLKAMGHNTPTTIQRMTIPLAMEQRDILARAPTGTGKTASFLLPALQHLIDFPRRRPG 72
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
Q + LVL+P++EL +Q+H+ L D+K I+ V QE +L DI+VA
Sbjct: 73 Q-PRVLVLTPTRELASQIHRYASHLATNLELDIKL--ITGGVPYGPQEEMLKSNVDILVA 129
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L +L + +E+++IDEAD + G+ + +K + QA+L SATL
Sbjct: 130 TPGRLLEYLDKGHFSAE-LVEVLVIDEADRMLDMGFGEVVKTIAVEASGRKQAMLFSATL 188
Query: 210 -SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGK 268
V S +L P+ ++ E P H+ +D K +L LLK V+ +
Sbjct: 189 EGGGVGSFARELLNEPMFVESEPPRSEKAKIHQWIHLADDKDHKFALLTHLLKQEEVK-R 247
Query: 269 TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL 328
I+F T D L+ L+Q I+ + ++ K R A+ +F +G +V++A+D A
Sbjct: 248 AIVFCKTRDVVASLEGQLQQAGIACAFMRGDMDQKKRFQALGRFTKGEVNVLLATDVAA- 306
Query: 329 ETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGT 388
RGID + +++VINFD P Y+HR GRT R +GT
Sbjct: 307 ----------------------RGIDIEDITHVINFDMPRSADTYVHRIGRTGRAGAKGT 344
Query: 389 ALSFV 393
A+S V
Sbjct: 345 AISLV 349
>gi|385223306|ref|YP_005783232.1| ATP dependent RNA helicase [Helicobacter pylori 2017]
gi|385231153|ref|YP_005791072.1| cold-shock DEAD-box protein A [Helicobacter pylori 2018]
gi|420439937|ref|ZP_14938897.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-30]
gi|420463244|ref|ZP_14962022.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-4]
gi|420475132|ref|ZP_14973803.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-21]
gi|325995530|gb|ADZ50935.1| Cold-shock DEAD-box protein A [Helicobacter pylori 2018]
gi|325997128|gb|ADZ49336.1| ATP dependent RNA helicase [Helicobacter pylori 2017]
gi|393057963|gb|EJB58859.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-30]
gi|393080772|gb|EJB81497.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-4]
gi|393093239|gb|EJB93856.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-21]
Length = 491
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPE-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|315281538|ref|ZP_07870145.1| dead-box ATP-dependent rna helicase ydbr [Listeria marthii FSL
S4-120]
gi|386007591|ref|YP_005925869.1| ATP-dependent RNA helicase [Listeria monocytogenes L99]
gi|404407318|ref|YP_006690033.1| ATP-dependent RNA helicase [Listeria monocytogenes SLCC2376]
gi|422408998|ref|ZP_16485959.1| dead-box ATP-dependent rna helicase ydbr [Listeria monocytogenes
FSL F2-208]
gi|423099964|ref|ZP_17087671.1| DEAD/DEAH box helicase [Listeria innocua ATCC 33091]
gi|307570401|emb|CAR83580.1| ATP-dependent RNA helicase [Listeria monocytogenes L99]
gi|313609827|gb|EFR85263.1| dead-box ATP-dependent rna helicase ydbr [Listeria monocytogenes
FSL F2-208]
gi|313614811|gb|EFR88348.1| dead-box ATP-dependent rna helicase ydbr [Listeria marthii FSL
S4-120]
gi|370793697|gb|EHN61530.1| DEAD/DEAH box helicase [Listeria innocua ATCC 33091]
gi|404241467|emb|CBY62867.1| ATP-dependent RNA helicase [Listeria monocytogenes SLCC2376]
Length = 518
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 110/373 (29%), Positives = 199/373 (53%), Gaps = 43/373 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++++ ++G+ E T IQE+ IPL L KD++ +A+TG+GKT AF +PMI KI Q
Sbjct: 16 VKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHKIDQKSNNVQ- 74
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
AL+++P++EL Q+ + + +L+ + V+ + + D+S Q L + P IVV
Sbjct: 75 ----ALIIAPTRELAIQVSEELYKLS--YDKHVRVLAVYGGSDISRQIRSLKKNPQIVVG 128
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H+ +TL L +E +++DEAD + + G+ DD++ +LK +P Q +L SAT+
Sbjct: 129 TPGRILDHINRRTLKL-DHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLLFSATM 187
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLL-----KLNL 264
+ + + + +P +++++ + + + + + E EK +L LL +L +
Sbjct: 188 PDPIRRIGERFMHSPELIRIKAKEMTAL-LIEQFFVKVHEKEKFDVLSRLLDVQAPELAI 246
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
V G+T V+ + + ++ Y+ + ++ +L R + +F +G DV++A+D
Sbjct: 247 VFGRTKRRVDELSRALDMRGYVAEG------IHGDLTQAKRMSVLRKFKEGKIDVLVATD 300
Query: 325 EKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384
A RG+D V++V N+D P D + Y+HR GRT R
Sbjct: 301 VAA-----------------------RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG 337
Query: 385 NQGTALSFVSLRE 397
+G A++FV RE
Sbjct: 338 KEGMAITFVQPRE 350
>gi|46907098|ref|YP_013487.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes serotype 4b
str. F2365]
gi|47092073|ref|ZP_00229866.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes str. 4b
H7858]
gi|254992756|ref|ZP_05274946.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J2-064]
gi|255521719|ref|ZP_05388956.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J1-175]
gi|258611720|ref|ZP_05241706.2| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL R2-503]
gi|293596169|ref|ZP_05228867.2| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J1-194]
gi|293596832|ref|ZP_05264606.2| ATP-dependent RNA helicase DeaD [Listeria monocytogenes HPB2262]
gi|300764074|ref|ZP_07074069.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL N1-017]
gi|404280417|ref|YP_006681315.1| ATP-dependent RNA helicase [Listeria monocytogenes SLCC2755]
gi|404286275|ref|YP_006692861.1| ATP-dependent RNA helicase [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|405749220|ref|YP_006672686.1| ATP-dependent RNA helicase [Listeria monocytogenes ATCC 19117]
gi|405752085|ref|YP_006675550.1| ATP-dependent RNA helicase [Listeria monocytogenes SLCC2378]
gi|405754943|ref|YP_006678407.1| ATP-dependent RNA helicase [Listeria monocytogenes SLCC2540]
gi|406703641|ref|YP_006753995.1| ATP-dependent RNA helicase [Listeria monocytogenes L312]
gi|424713744|ref|YP_007014459.1| DEAD-box ATP-dependent RNA helicase CshA [Listeria monocytogenes
serotype 4b str. LL195]
gi|424822593|ref|ZP_18247606.1| ATP-dependent RNA helicase [Listeria monocytogenes str. Scott A]
gi|46880365|gb|AAT03664.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes serotype 4b
str. F2365]
gi|47019513|gb|EAL10253.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes str. 4b
H7858]
gi|258605664|gb|EEW18272.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL R2-503]
gi|293582796|gb|EFF94828.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes HPB2262]
gi|293593090|gb|EFG00851.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J1-194]
gi|300515064|gb|EFK42116.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL N1-017]
gi|332311273|gb|EGJ24368.1| ATP-dependent RNA helicase [Listeria monocytogenes str. Scott A]
gi|404218420|emb|CBY69784.1| ATP-dependent RNA helicase [Listeria monocytogenes ATCC 19117]
gi|404221285|emb|CBY72648.1| ATP-dependent RNA helicase [Listeria monocytogenes SLCC2378]
gi|404224143|emb|CBY75505.1| ATP-dependent RNA helicase [Listeria monocytogenes SLCC2540]
gi|404227052|emb|CBY48457.1| ATP-dependent RNA helicase [Listeria monocytogenes SLCC2755]
gi|404245204|emb|CBY03429.1| ATP-dependent RNA helicase [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|406360671|emb|CBY66944.1| ATP-dependent RNA helicase [Listeria monocytogenes L312]
gi|424012928|emb|CCO63468.1| DEAD-box ATP-dependent RNA helicase CshA [Listeria monocytogenes
serotype 4b str. LL195]
Length = 519
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 110/373 (29%), Positives = 199/373 (53%), Gaps = 43/373 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++++ ++G+ E T IQE+ IPL L KD++ +A+TG+GKT AF +PMI KI Q
Sbjct: 16 VKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHKIDQKSNNVQ- 74
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
AL+++P++EL Q+ + + +L+ + V+ + + D+S Q L + P IVV
Sbjct: 75 ----ALIIAPTRELAIQVSEELYKLS--YDKHVRVLAVYGGSDISRQIRSLKKNPQIVVG 128
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H+ +TL L +E +++DEAD + + G+ DD++ +LK +P Q +L SAT+
Sbjct: 129 TPGRILDHINRRTLKL-DHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLLFSATM 187
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLL-----KLNL 264
+ + + + +P +++++ + + + + + E EK +L LL +L +
Sbjct: 188 PDPIRRIGERFMHSPELIRIKAKEMTAL-LIEQFFVKVHEKEKFDVLSRLLDVQAPELAI 246
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
V G+T V+ + + ++ Y+ + ++ +L R + +F +G DV++A+D
Sbjct: 247 VFGRTKRRVDELSRALDMRGYVAEG------IHGDLTQAKRMSVLRKFKEGKIDVLVATD 300
Query: 325 EKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384
A RG+D V++V N+D P D + Y+HR GRT R
Sbjct: 301 VAA-----------------------RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG 337
Query: 385 NQGTALSFVSLRE 397
+G A++FV RE
Sbjct: 338 KEGMAITFVQPRE 350
>gi|301067543|ref|YP_003789566.1| superfamily II DNA and RNA helicase [Lactobacillus casei str.
Zhang]
gi|300439950|gb|ADK19716.1| Superfamily II DNA and RNA helicase [Lactobacillus casei str.
Zhang]
Length = 502
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 113/373 (30%), Positives = 194/373 (52%), Gaps = 43/373 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AIA+ G+ E T IQ IPL+L KDV+ +A+TG+GKT AF +P++Q I ++ Q
Sbjct: 13 LKAIAQSGFEEATPIQAETIPLVLAGKDVIGQAQTGTGKTAAFGLPILQNIDKADRSIQ- 71
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
ALV+SP++EL Q + + L + +K + D+ Q L E P IVV
Sbjct: 72 ----ALVISPTRELAIQTQEELYRLGQ--DKKIKVQAVYGGADIRRQIRQLSEHPQIVVG 125
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H+ TL L+ +L+++++DEAD + G+ DD++ +++ +P Q +L SAT+
Sbjct: 126 TPGRILDHIGRHTLKLQ-NLKVLVLDEADEMLDMGFIDDIEKIVEQMPTARQTLLFSATI 184
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLL-----KLNL 264
++ L + + PV +K++ + + Y++ A++ EK ++ L L L
Sbjct: 185 PASIMRLTNKFMHEPVTVKIKAKELT-ADTVEQYYVRAKDYEKFDVMTRLFDVQDPDLAL 243
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
+ G+T V+ + + K + Y + ++ +L + R + QF G D ++A+D
Sbjct: 244 IFGRTKRRVDELTRGLKARGYRAEG------IHGDLTQQKRMSVLRQFKSGQLDFLVATD 297
Query: 325 EKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384
A RG+D V++V N+D P D Y+HR GRT R
Sbjct: 298 VAA-----------------------RGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAG 334
Query: 385 NQGTALSFVSLRE 397
++G +++FV+ E
Sbjct: 335 HKGVSVTFVTPNE 347
>gi|350544972|ref|ZP_08914491.1| ATP-dependent RNA helicase Bcep18194_A5658 [Candidatus Burkholderia
kirkii UZHbot1]
gi|350527233|emb|CCD38619.1| ATP-dependent RNA helicase Bcep18194_A5658 [Candidatus Burkholderia
kirkii UZHbot1]
Length = 493
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 115/386 (29%), Positives = 201/386 (52%), Gaps = 35/386 (9%)
Query: 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII- 81
F L L+A+ + G+ PT IQ +AIP++L +DV+ A+TG+GKT +F++P+IQ+++
Sbjct: 22 FGLSSDILKAVRESGYTTPTPIQAQAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQRLLP 81
Query: 82 --NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL 139
N + +AL+L+P++EL +Q+ N+Q T ++ + VD++ Q
Sbjct: 82 TANTSASPARHPVRALMLTPTRELADQVAANVQ--TYSKHTPLRSTVVFGGVDMNPQSDA 139
Query: 140 LVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199
L +I++ATP R L H++ KT++L ++++++DEAD + G+ D++ +L LPK
Sbjct: 140 LRRGVEILIATPGRLLDHVQQKTVNL-GQVQMLVLDEADRMLDMGFLPDLQRILNLLPKE 198
Query: 200 YQAILASATLSEDVLSLKHLILRNPVILKL--EEPAIAPVSQLAHYHILAQEDEKATILY 257
Q +L SAT S ++ L LRNP +++ A V Q+ Y + E +K+ +
Sbjct: 199 CQTLLFSATFSAEIKKLASTYLRNPQTIEVARSNSTNANVRQIV-YEV--HESDKSGAVA 255
Query: 258 TLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLY 317
L++ ++ + I+F N+ +L LE+ I ++ + R A+ F +G
Sbjct: 256 QLIRERKLK-QVIVFCNSKIGASRLARVLERDGIVATAIHGDRTQSERMQALDAFKRGEI 314
Query: 318 DVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRA 377
+ ++A+D A RG+D + VINFD P + + Y+HR
Sbjct: 315 EALVATDVAA-----------------------RGLDIAELPAVINFDLPFNAEDYVHRI 351
Query: 378 GRTARGKNQGTALSFVSLREQDLMND 403
GRT R G ALS S E+ + D
Sbjct: 352 GRTGRAGASGDALSLCSANERKQLAD 377
>gi|254778953|ref|YP_003057058.1| ATP-dependent RNA helicase, DEAD-box family DEAD [Helicobacter
pylori B38]
gi|254000864|emb|CAX28796.1| ATP-dependent RNA helicase, DEAD-box family DEAD [Helicobacter
pylori B38]
Length = 492
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPK-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|78067127|ref|YP_369896.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
gi|77967872|gb|ABB09252.1| DEAD/DEAH box helicase-like protein [Burkholderia sp. 383]
Length = 527
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 116/386 (30%), Positives = 199/386 (51%), Gaps = 35/386 (9%)
Query: 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII- 81
F L L+AIA+ G+ PT IQ +AIP++L +DV+ A+TG+GKT +F++P+IQ+++
Sbjct: 38 FGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQRLLP 97
Query: 82 --NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL 139
N + +AL+L+P++EL +Q+ N+ ++ + VD++ Q
Sbjct: 98 QANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTP--LRSAVVFGGVDMNPQMAE 155
Query: 140 LVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199
L ++++ATP R L H++ KT +L ++I+++DEAD + G+ D++ +L LPK
Sbjct: 156 LRRGVEVLIATPGRLLDHVQQKTANL-GQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 214
Query: 200 YQAILASATLSEDVLSLKHLILRNPVILKL--EEPAIAPVSQLAHYHILAQEDEKATILY 257
Q +L SAT S ++ L LRNP +++ A V+Q+ + +A+ D++A ++
Sbjct: 215 RQTLLFSATFSGEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYD--VAEGDKQAAVVQ 272
Query: 258 TLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLY 317
L L Q I+F N+ +L LE+ + ++ + R A+ F +G
Sbjct: 273 LLRDRGLKQ--VIVFCNSKIGASRLARNLERDGVVASAIHGDKTQIERMQALDAFKRGEI 330
Query: 318 DVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRA 377
+ ++A+D A RG+D + VINFD P + Y+HR
Sbjct: 331 EALVATDVAA-----------------------RGLDIAELPAVINFDLPFSAEDYVHRI 367
Query: 378 GRTARGKNQGTALSFVSLREQDLMND 403
GRT R G ALS S E+ + D
Sbjct: 368 GRTGRAGATGDALSLCSPNERKQLAD 393
>gi|402565885|ref|YP_006615230.1| DEAD/DEAH box helicase [Burkholderia cepacia GG4]
gi|402247082|gb|AFQ47536.1| DEAD/DEAH box helicase domain protein [Burkholderia cepacia GG4]
Length = 574
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 117/386 (30%), Positives = 199/386 (51%), Gaps = 35/386 (9%)
Query: 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII- 81
F L L+AIA+ G+ PT IQ +AIP++L +DV+ A+TG+GKT +F++P+IQ+++
Sbjct: 90 FGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQRLLP 149
Query: 82 --NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL 139
N + +AL+L+P++EL +Q+ N+ ++ + VD++ Q
Sbjct: 150 QANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTP--LRSAVVFGGVDMNPQMAE 207
Query: 140 LVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199
L +I++ATP R L H++ KT +L ++I+++DEAD + G+ D++ +L LPK
Sbjct: 208 LRRGVEILIATPGRLLDHVQQKTANL-GQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 266
Query: 200 YQAILASATLSEDVLSLKHLILRNPVILKL--EEPAIAPVSQLAHYHILAQEDEKATILY 257
Q +L SAT S ++ L LRNP +++ A V+Q+ + +A+ D++A ++
Sbjct: 267 RQTLLFSATFSGEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYD--VAEGDKQAAVVQ 324
Query: 258 TLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLY 317
L L Q I+F N+ +L LE+ + ++ + R A+ F +G
Sbjct: 325 LLRDRGLKQ--VIVFCNSKIGASRLARNLERDGVVASAIHGDKTQIERMQALDAFKRGEI 382
Query: 318 DVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRA 377
+ ++A+D A RG+D + VINFD P + Y+HR
Sbjct: 383 EALVATDVAA-----------------------RGLDIAELPAVINFDLPFSAEDYVHRI 419
Query: 378 GRTARGKNQGTALSFVSLREQDLMND 403
GRT R G ALS S E+ + D
Sbjct: 420 GRTGRAGATGDALSLCSPNERKQLAD 445
>gi|352081056|ref|ZP_08951934.1| DEAD/DEAH box helicase domain protein [Rhodanobacter sp. 2APBS1]
gi|389797682|ref|ZP_10200722.1| ATP-dependent RNA helicase [Rhodanobacter sp. 116-2]
gi|351683097|gb|EHA66181.1| DEAD/DEAH box helicase domain protein [Rhodanobacter sp. 2APBS1]
gi|388446756|gb|EIM02776.1| ATP-dependent RNA helicase [Rhodanobacter sp. 116-2]
Length = 442
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 115/367 (31%), Positives = 185/367 (50%), Gaps = 29/367 (7%)
Query: 37 GWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALV 96
G+ +PT IQ AIP L+ D+L A+TG+GKT AFA+P++QK+ QT + +AL+
Sbjct: 20 GYTQPTPIQAAAIPPALEGHDLLAAAQTGTGKTAAFALPLLQKLSTSGQT-MTRRPRALI 78
Query: 97 LSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALA 156
L+P++EL Q+H+N+++ V I V + Q L DIV+ATP R +
Sbjct: 79 LTPTRELAAQIHENMRDYGKHI--HVSATTIFGGVGMGPQINALRRGVDIVIATPGRLMD 136
Query: 157 HLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSL 216
H++ +TLDL S++E +++DEAD + G+ +K +L+ +PK Q +L SAT + + +L
Sbjct: 137 HMQQRTLDL-SAVETLVLDEADRMLDMGFLPALKRILQSVPKKRQTLLFSATFAPAIKTL 195
Query: 217 KHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTIIFVNTV 276
+ NP + + P H + ++ +L+ L + + Q +++F T
Sbjct: 196 AMEFMHNPREISVSAPNTVTTLVSHQVHPVDASRKRDLLLHVLSQDSRRQ--SLVFSRTK 253
Query: 277 DKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINST 336
KL +L + + ++ AR A+ F G V++A+D A
Sbjct: 254 HGADKLVTFLNASGLRSAAIHGNKSQNARTRALSDFKSGRVTVLVATDIAA--------- 304
Query: 337 NNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLR 396
RGID + + VINFD P + Y+HR GRT R +G ALS VS
Sbjct: 305 --------------RGIDIEQLPIVINFDLPSVAEDYVHRIGRTGRAGMEGLALSLVSHD 350
Query: 397 EQDLMND 403
E L+ D
Sbjct: 351 ESGLLFD 357
>gi|167835963|ref|ZP_02462846.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis MSMB43]
Length = 397
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 113/384 (29%), Positives = 198/384 (51%), Gaps = 31/384 (8%)
Query: 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII- 81
F L L+AIA+ G+ PT IQ +AIP++L +DV+ A+TG+GKT +F++P+IQ+++
Sbjct: 16 FGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQRLLP 75
Query: 82 --NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL 139
N + +AL+L+P++EL +Q+ N+ ++ + VD++ Q
Sbjct: 76 QANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTP--LRSAVVFGGVDMNPQMAE 133
Query: 140 LVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199
L +I++ATP R L H++ KT +L ++I+++DEAD + G+ D++ +L LPK
Sbjct: 134 LRRGVEILIATPGRLLDHVQQKTANL-GQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192
Query: 200 YQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTL 259
Q +L SAT S ++ L LR+P +++ A + + +A+ D++A ++ +
Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRDPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKLI 252
Query: 260 LKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDV 319
+L Q I+F N+ +L +E+ I ++ + R A+ F +G +
Sbjct: 253 RDRSLKQ--VIVFCNSKIGASRLARQIERDGIVAAAIHGDRSQSERMQALDAFKRGEIEA 310
Query: 320 IIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGR 379
++A+D A RG+D + VINFD P + + Y+HR GR
Sbjct: 311 LVATDVAA-----------------------RGLDIVELPAVINFDLPFNAEDYVHRIGR 347
Query: 380 TARGKNQGTALSFVSLREQDLMND 403
T R G ALS S E+ + D
Sbjct: 348 TGRAGASGDALSLCSPNERKQLAD 371
>gi|95928808|ref|ZP_01311554.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
gi|95135153|gb|EAT16806.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
Length = 426
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 113/378 (29%), Positives = 193/378 (51%), Gaps = 36/378 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+A G+ EPT IQ +AIP +L D+L A+TG+GKT F +P++Q++ + ++
Sbjct: 14 LRAVADQGYSEPTPIQAQAIPAVLNGGDILAAAQTGTGKTAGFTLPVLQRLSDTPVSSGR 73
Query: 90 QETKALVLSPSKELCNQLHKNIQE----LTMKCSRDVKCVDISEQVDVSVQEPLLVERPD 145
+ +ALVL+P++EL Q+ ++ + L ++ + V I+ Q+ +L + D
Sbjct: 74 RPVRALVLTPTRELAAQVGASVADYGKYLPLRSAIVFGGVKINPQIS------MLRKGVD 127
Query: 146 IVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILA 205
I+VATP R L H+ KT+DL S +EI+I+DEAD + G+ D++ VL LPK Q +L
Sbjct: 128 ILVATPGRLLDHVSQKTVDL-SKVEILILDEADRMLDMGFIRDIRKVLALLPKKRQNLLF 186
Query: 206 SATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLV 265
SAT S+D+ L +L P ++++ A H++ + ++ + + + N
Sbjct: 187 SATFSDDIKRLADSLLNTPTLIEVARRNTASEQVEQSVHLIEKSRKRELLSHMIGSQNWQ 246
Query: 266 QGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE 325
Q ++F T +L LE+ + + ++ AR A+ F G V++A+D
Sbjct: 247 Q--VLVFTRTKRGANRLAQQLEKDGLKSTAIHGNKTQGARTKALADFKAGRARVLVATDI 304
Query: 326 KALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKN 385
A RG+D + NV+N++ P + Y+HR GRT R
Sbjct: 305 AA-----------------------RGLDIDQLPNVVNYELPDVPEDYVHRIGRTGRAGR 341
Query: 386 QGTALSFVSLREQDLMND 403
G A+S V E+ + D
Sbjct: 342 DGKAVSLVCSEEKKQLRD 359
>gi|420443256|ref|ZP_14942184.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-41]
gi|393060763|gb|EJB61632.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-41]
Length = 491
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPE-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|389579132|ref|ZP_10169159.1| DNA/RNA helicase, superfamily II [Desulfobacter postgatei 2ac9]
gi|389400767|gb|EIM62989.1| DNA/RNA helicase, superfamily II [Desulfobacter postgatei 2ac9]
Length = 422
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 110/363 (30%), Positives = 192/363 (52%), Gaps = 33/363 (9%)
Query: 32 AIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQE 91
IA G+ PT IQ+ AIP IL+ +D+L A+TG+GKT AF +P++Q+++N ++
Sbjct: 15 GIAACGYTLPTPIQKEAIPPILEGRDILGLAQTGTGKTAAFVLPLLQRLLN----GPRKK 70
Query: 92 TKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATP 151
+AL+++P++EL Q+H +I +L K ++ + I V Q + +I+VA P
Sbjct: 71 VRALIVAPTRELAEQIHADISKLGQKTG--LQSISIYGGVGKPPQIKAIRSGVEIIVACP 128
Query: 152 ARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSE 211
R L L ++ L+ ++E++++DEAD +F G+ D++ ++K LP Q+++ SAT+ E
Sbjct: 129 GRLLDLLNDRSFSLQ-AVEMLVLDEADHMFDKGFLPDIRRIIKQLPTKRQSLVFSATMPE 187
Query: 212 DVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTII 271
++ L IL NPV +++ PV ++H +++K ++L T++K ++ T++
Sbjct: 188 EIRHLAENILINPVTVQINH--TQPVLAISHVLFQVAKEQKTSLLKTIIKEEEMK-STLV 244
Query: 272 FVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETP 331
F T K L L L++ + L R A+ F G + +++A+D A
Sbjct: 245 FTRTKHKAKSLALVLQKAGYKAASIQGNLSQLKRQEALNGFKTGEFKILVATDIAA---- 300
Query: 332 QINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALS 391
RGID + +S+VIN+D P + Y HR GRT R + G A
Sbjct: 301 -------------------RGIDVKGISHVINYDVPDTPETYTHRTGRTGRAERAGQAFI 341
Query: 392 FVS 394
F
Sbjct: 342 FAG 344
>gi|294139294|ref|YP_003555272.1| DEAD/DEAH box helicase [Shewanella violacea DSS12]
gi|293325763|dbj|BAJ00494.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea
DSS12]
Length = 478
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 118/386 (30%), Positives = 195/386 (50%), Gaps = 30/386 (7%)
Query: 19 LPFTFTLFCIP-LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMI 77
+ FT P L+A+A G+ P+ IQ +AIP +L+ KDV+ A+TG+GKT F +P++
Sbjct: 1 MSFTSLGLSAPILKAVASKGYETPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLL 60
Query: 78 QKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQE 137
+ +++ AQ ++ +ALVL+P++EL Q+ ++++ T +K I V + Q
Sbjct: 61 E-LLSRGNRAQAKKVRALVLTPTRELAAQVAESVE--TYGKYLPLKSAVIFGGVGIGPQI 117
Query: 138 PLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLP 197
L + DI+VATP R L ++ + LE++I+DEAD + G+ D+K +L+ LP
Sbjct: 118 SKLGKGVDILVATPGRLLDLYNQGAVNF-NQLEVLILDEADRMLDMGFIHDIKKILRVLP 176
Query: 198 KLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILY 257
Q ++ SAT S+D+ L ++ NPV + + P A + Y + + +K L
Sbjct: 177 AKRQNLMFSATFSDDIRKLAKGLVNNPVEISV-TPRNATAKSVEQYIYMVDQKQKTAALI 235
Query: 258 TLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLY 317
L+K N + + ++F T ++ LE ++ ++ AR A+ F G
Sbjct: 236 HLIKQNDWK-QVLVFSRTKHGANRIAKNLEANDLTAAAIHGNKSQGARTKALANFKNGAV 294
Query: 318 DVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRA 377
V++A+D A RGID + NV+NFD P + Y+HR
Sbjct: 295 RVLVATDIAA-----------------------RGIDIDQLPNVVNFDLPNVPEDYVHRI 331
Query: 378 GRTARGKNQGTALSFVSLREQDLMND 403
GRT R G A+S VS E L+ D
Sbjct: 332 GRTGRAGASGQAVSLVSGDESKLLRD 357
>gi|420490274|ref|ZP_14988860.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-13]
gi|393109617|gb|EJC10148.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-13]
Length = 491
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKAVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPE-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|420483531|ref|ZP_14982161.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-3]
gi|420513885|ref|ZP_15012358.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-3b]
gi|393102756|gb|EJC03320.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-3]
gi|393158348|gb|EJC58608.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-3b]
Length = 491
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 191/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPE-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F+ T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFMRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|420431829|ref|ZP_14930848.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-16]
gi|393049422|gb|EJB50388.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-16]
Length = 491
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPE-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|385218535|ref|YP_005780010.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori Gambia94/24]
gi|317013693|gb|ADU81129.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori Gambia94/24]
Length = 491
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNADITQRFYVI-NEHERAEAIMRLLDTQAPE-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|116253340|ref|YP_769178.1| DEAD/DEAH box helicase [Rhizobium leguminosarum bv. viciae 3841]
gi|115257988|emb|CAK09086.1| putative DEAD box ATP-dependent RNA helicase protein [Rhizobium
leguminosarum bv. viciae 3841]
Length = 576
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 115/384 (29%), Positives = 195/384 (50%), Gaps = 35/384 (9%)
Query: 20 PFTFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQK 79
P TLF +LG PT IQE +IPL+L+ +D++ A+TG+GKT AF +P+I+K
Sbjct: 27 PIVATLF--------QLGIETPTPIQEHSIPLLLEGRDLIGLAQTGTGKTAAFGLPLIEK 78
Query: 80 IINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL 139
++ ++ + T+ L+L+P++EL NQ+ +++++ K S + V V ++ Q+
Sbjct: 79 LLADERRPDNRTTRTLILAPTRELVNQIAESLKKFIRKSSLRINVV--VGGVSINKQQLQ 136
Query: 140 LVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199
L + DI+VATP R L + + + L +++ +++DEAD + G+ D++ + K +PK
Sbjct: 137 LEKGTDILVATPGRLLDLINRRAITL-TAVRYLVLDEADQMLDLGFVHDLRKIAKMVPKK 195
Query: 200 YQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTL 259
Q +L SAT+ + + L L +PV +++ P A + H + +++K +L
Sbjct: 196 RQTMLFSATMPKAIADLAGEYLVDPVKVEVTPPGKAADKVEQYVHFVGGKNDKTELLRKS 255
Query: 260 LKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDV 319
L N G+ ++F+ T KL +LE S ++ R A+ F G
Sbjct: 256 LTEN-PDGRAMVFLRTKHGAEKLMKHLENIGYSVASIHGNKSQGQRERALKAFRDGSIKT 314
Query: 320 IIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGR 379
+IA+D A RGID VS+V N+D P Y+HR GR
Sbjct: 315 LIATDVAA-----------------------RGIDIPAVSHVYNYDLPEVPDAYVHRIGR 351
Query: 380 TARGKNQGTALSFVSLREQDLMND 403
TAR G A++F + E L+ D
Sbjct: 352 TARAGRDGIAIAFCAPDEAKLLRD 375
>gi|88603077|ref|YP_503255.1| DEAD/DEAH box helicase-like protein [Methanospirillum hungatei
JF-1]
gi|88188539|gb|ABD41536.1| DEAD/DEAH box helicase-like protein [Methanospirillum hungatei
JF-1]
Length = 531
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 121/374 (32%), Positives = 190/374 (50%), Gaps = 32/374 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++AI +G+ EPT IQ+ IPLIL DV +A TG+GKT AF IP I+ L Q A
Sbjct: 16 IKAIRDIGYEEPTPIQQEVIPLILAGNDVAGQAYTGTGKTAAFGIPAIE----LCQPAN- 70
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ + +VL PS+EL Q+ + +L M + + + + + Q L I++
Sbjct: 71 RNVQTIVLCPSRELAVQVGTELNKLAMH-KKGISILPVYGGQPIERQIKALSRGVQIIIG 129
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + H+K KTL L ++ +V++DEAD + G+ +D++ +L +PK Q ++ SAT
Sbjct: 130 TPGRVIDHIKRKTL-LLDAVSLVVLDEADQMLDMGFREDIEEILSHIPKERQTVILSATF 188
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
++L + +NP+ +K+ + V Q+ Y+I +E KA L +L+ Q +T
Sbjct: 189 PPEILDISRRFQKNPIDVKMVHQELT-VPQIEQYYIEVREPAKADTLIRVLEFYQPQ-RT 246
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
IIF NT + L+ L+ + R + F +G +++IA+D A
Sbjct: 247 IIFCNTQIAVDAVSSALKAEGFLADGLHGGMAQAQRDKVMNAFRKGQLEILIATDVAA-- 304
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
RGID + + V NFDFP D + Y+HR GRTAR G A
Sbjct: 305 ---------------------RGIDVEEIDLVCNFDFPQDDEYYVHRIGRTARAGRTGRA 343
Query: 390 LSFVSLREQDLMND 403
+SFVS RE+ + D
Sbjct: 344 ISFVSPRERYRLRD 357
>gi|417994179|ref|ZP_12634513.1| cold-shock DEAD-box protein A [Lactobacillus casei CRF28]
gi|410530495|gb|EKQ05268.1| cold-shock DEAD-box protein A [Lactobacillus casei CRF28]
Length = 502
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 113/373 (30%), Positives = 194/373 (52%), Gaps = 43/373 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AIA+ G+ E T IQ IPL+L KDV+ +A+TG+GKT AF +P++Q I ++ Q
Sbjct: 13 LKAIAQSGFEEATPIQAETIPLVLAGKDVIGQAQTGTGKTAAFGLPILQNIDKADRSIQ- 71
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
ALV+SP++EL Q + + L + +K + D+ Q L E P IVV
Sbjct: 72 ----ALVISPTRELAIQTQEELYRLGQ--DKKIKVQAVYGGADIRRQIRQLSEHPQIVVG 125
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H+ TL L+ +L+++++DEAD + G+ DD++ +++ +P Q +L SAT+
Sbjct: 126 TPGRILDHIGRHTLKLQ-NLKVLVLDEADEMLDMGFIDDIEKIVEQMPTARQTLLFSATI 184
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLL-----KLNL 264
++ L + + PV +K++ + + Y++ A++ EK ++ L L L
Sbjct: 185 PASIMRLTNKFMHEPVTVKIKAKELT-ADTVEQYYVRAKDYEKFDVMTRLFDVQDPDLAL 243
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
+ G+T V+ + + K + Y + ++ +L + R + QF G D ++A+D
Sbjct: 244 IFGRTKRRVDELTRGLKARGYRAEG------IHGDLTQQKRMSVLRQFKSGQLDFLVATD 297
Query: 325 EKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384
A RG+D V++V N+D P D Y+HR GRT R
Sbjct: 298 VAA-----------------------RGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAG 334
Query: 385 NQGTALSFVSLRE 397
++G +++FV+ E
Sbjct: 335 HKGVSVTFVTPNE 347
>gi|420501086|ref|ZP_14999630.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-30]
gi|393149892|gb|EJC50200.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-30]
Length = 492
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPK-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|418937787|ref|ZP_13491383.1| DEAD/DEAH box helicase domain protein [Rhizobium sp. PDO1-076]
gi|375055471|gb|EHS51723.1| DEAD/DEAH box helicase domain protein [Rhizobium sp. PDO1-076]
Length = 478
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 111/371 (29%), Positives = 185/371 (49%), Gaps = 27/371 (7%)
Query: 33 IAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQET 92
++ LG+ PT IQE+AIPL+L+ +D++ A+TG+GKT AF +P+I+ ++ ++ + T
Sbjct: 32 LSHLGFETPTPIQEKAIPLVLEGRDIVGLAQTGTGKTAAFGLPLIEMLLKDEKRPDNRTT 91
Query: 93 KALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPA 152
+ L+L+P++EL NQ+ N++ + +K + + Q+ L + DI+VATP
Sbjct: 92 RTLILAPTRELVNQIGDNLRSYLRRLP--LKINQVVGGASIGKQQLQLEKGTDILVATPG 149
Query: 153 RALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSED 212
R L + + L+ ++ +++DEAD + G+ D++ + K +P Q +L SAT+
Sbjct: 150 RLLDLIARNAISLR-AVTFLVLDEADQMLDLGFIHDLRKISKMVPAKRQTLLFSATMPSS 208
Query: 213 VLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTIIF 272
+ L L NP + + P A H H +A ++ K +L +L N G++I+F
Sbjct: 209 IADLAATFLNNPAKVAVTAPGKAADKVEQHVHFVAGQNAKTEMLKKILVEN-PDGRSIVF 267
Query: 273 VNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQ 332
+ T KL +LE S ++ R A+ F G +IA+D A
Sbjct: 268 LRTKHGAEKLMKHLEVNGFSVASIHGNKSQGQRERALKGFRDGEIRTLIATDVAA----- 322
Query: 333 INSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSF 392
RGID VS+V N+D P Y+HR GRTAR G A++F
Sbjct: 323 ------------------RGIDIPAVSHVFNYDLPEVPDAYVHRIGRTARAGRDGIAIAF 364
Query: 393 VSLREQDLMND 403
E L+ D
Sbjct: 365 CGPDEGRLLRD 375
>gi|358065451|ref|ZP_09151993.1| hypothetical protein HMPREF9473_04056 [Clostridium hathewayi
WAL-18680]
gi|356696343|gb|EHI57960.1| hypothetical protein HMPREF9473_04056 [Clostridium hathewayi
WAL-18680]
Length = 534
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 129/381 (33%), Positives = 202/381 (53%), Gaps = 41/381 (10%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINL-KQTAQ 88
L+A+ K G+ +P+ IQE+AIP +L+ +D+L A+TG+GKT AFA+P+IQ ++ ++ Q
Sbjct: 13 LKALEKKGYSQPSPIQEQAIPYVLEKRDLLGCAQTGTGKTAAFALPIIQNLMECPRKRQQ 72
Query: 89 VQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
+ +AL+L+P++EL Q+ NI+E VK I V Q L + DI+V
Sbjct: 73 KKPIRALILTPTRELALQIADNIKEYGEYTP--VKGTVIFGGVSAVPQIQDLRKGVDILV 130
Query: 149 ATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
ATP R + + +DL S +EI ++DEAD + G+ D+K V+ LPK Q +L SAT
Sbjct: 131 ATPGRLNDLIGQREIDL-SYVEIFVLDEADRMLDMGFIHDVKKVIALLPKKRQTLLFSAT 189
Query: 209 LSEDVLSLKHLILRNPVILKLEEPAIAPVS------QLAHYHILAQEDEKATILYTLLKL 262
+ ++ SL +L NPV K+E + PVS + + Y++ + K +L LLK
Sbjct: 190 MPGEIQSLASKLLHNPV--KVE---VTPVSSTVDMIETSLYYV--DKANKRKLLEYLLKH 242
Query: 263 NLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIA 322
+ T++F T ++ YL + I+ ++ + AR A+ F G V++A
Sbjct: 243 EDITS-TLVFTRTKHGADQVSKYLTKAGINAAAIHGDKSQGARQTALNNFKSGKLRVLVA 301
Query: 323 SDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTAR 382
+D A RGID + +S VINFD P + Y+HR GRT R
Sbjct: 302 TDIAA-----------------------RGIDIEELSCVINFDLPNISETYVHRIGRTGR 338
Query: 383 GKNQGTALSFVSLREQDLMND 403
G ALSF ++ E+D + D
Sbjct: 339 AGLGGRALSFCAIEEKDYVRD 359
>gi|160884579|ref|ZP_02065582.1| hypothetical protein BACOVA_02566 [Bacteroides ovatus ATCC 8483]
gi|237718558|ref|ZP_04549039.1| ATP-dependent RNA helicase [Bacteroides sp. 2_2_4]
gi|299145716|ref|ZP_07038784.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
3_1_23]
gi|336413268|ref|ZP_08593620.1| hypothetical protein HMPREF1017_00728 [Bacteroides ovatus
3_8_47FAA]
gi|383111896|ref|ZP_09932700.1| hypothetical protein BSGG_4556 [Bacteroides sp. D2]
gi|423286675|ref|ZP_17265526.1| hypothetical protein HMPREF1069_00569 [Bacteroides ovatus
CL02T12C04]
gi|423296461|ref|ZP_17274546.1| hypothetical protein HMPREF1070_03211 [Bacteroides ovatus
CL03T12C18]
gi|156110318|gb|EDO12063.1| DEAD/DEAH box helicase [Bacteroides ovatus ATCC 8483]
gi|229452018|gb|EEO57809.1| ATP-dependent RNA helicase [Bacteroides sp. 2_2_4]
gi|298516207|gb|EFI40088.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
3_1_23]
gi|313697021|gb|EFS33856.1| hypothetical protein BSGG_4556 [Bacteroides sp. D2]
gi|335938312|gb|EGN00202.1| hypothetical protein HMPREF1017_00728 [Bacteroides ovatus
3_8_47FAA]
gi|392670184|gb|EIY63669.1| hypothetical protein HMPREF1070_03211 [Bacteroides ovatus
CL03T12C18]
gi|392675362|gb|EIY68804.1| hypothetical protein HMPREF1069_00569 [Bacteroides ovatus
CL02T12C04]
Length = 422
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 117/372 (31%), Positives = 201/372 (54%), Gaps = 34/372 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+ + + E T IQE+AIP+IL+ KD++ A+TG+GKT AF +P++ K+ K
Sbjct: 13 LEALDAMRFDECTPIQEQAIPIILEGKDLIAVAQTGTGKTAAFLLPVLNKLSEGKHPEDA 72
Query: 90 QETKALVLSPSKELCNQLHKNIQELT--MKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
+++SP++EL Q+ + ++ + M S V ++ + Q+ L D+V
Sbjct: 73 --INCVIMSPTRELAQQIDQQMEGFSYFMPVS-SVAVYGGNDGILFEQQKKGLTLGADVV 129
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
+ATP R +AHL +DL S + I+DEAD + G+ +D+ + K+LPK Q I+ SA
Sbjct: 130 IATPGRLIAHLSLGYVDL-SKVSYFILDEADRMLDMGFYEDIMQIAKYLPKERQTIMFSA 188
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIA-PVSQLAHYHILAQEDEKATILYTLLKLNLVQ 266
T+ + L + IL NP +KL A++ P ++ + E++K I+ +L ++ V
Sbjct: 189 TMPAKIQQLANTILNNPSEIKL---AVSKPAEKIIQAAYVCYENQKLGIIRSLF-MDEVP 244
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
+ I+F ++ K ++ L+ K++ ++S+L R +++F G ++++A+D
Sbjct: 245 ERVIVFASSKIKVKEVAKALKSMKLNVGEMHSDLEQAQRETVMHEFKAGRINILVATDI- 303
Query: 327 ALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQ 386
V+RGID + VINFD P D + Y+HR GRTAR N
Sbjct: 304 ----------------------VARGIDIDDIRLVINFDVPHDSEDYVHRIGRTARANND 341
Query: 387 GTALSFVSLREQ 398
G AL+F+S +EQ
Sbjct: 342 GVALTFISEKEQ 353
>gi|384895629|ref|YP_005769618.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori 35A]
gi|315586245|gb|ADU40626.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori 35A]
Length = 492
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAKAIMRLLDTQAPK-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|421719303|ref|ZP_16158589.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R046Wa]
gi|407222474|gb|EKE92273.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R046Wa]
Length = 492
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPK-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|420480288|ref|ZP_14978932.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-1]
gi|420510736|ref|ZP_15009225.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-1b]
gi|393098201|gb|EJB98793.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-1]
gi|393121244|gb|EJC21727.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-1b]
Length = 492
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPE-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|422421497|ref|ZP_16498450.1| ATP-dependent RNA helicase DeaD [Listeria seeligeri FSL S4-171]
gi|313638753|gb|EFS03844.1| ATP-dependent RNA helicase DeaD [Listeria seeligeri FSL S4-171]
Length = 525
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 109/373 (29%), Positives = 201/373 (53%), Gaps = 43/373 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++++ ++G+ E T IQE+ IPL L KD++ +A+TG+GKT AF +PMI KI Q
Sbjct: 14 VKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHKIDQKSNNVQ- 72
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
AL+++P++EL Q+ + + +L+ + V+ + + D+S Q L + P IVV
Sbjct: 73 ----ALIIAPTRELAIQVSEELYKLS--YDKHVRVLAVYGGSDISRQIRSLKKFPQIVVG 126
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H+ +TL L+ ++E +++DEAD + + G+ DD++ +LK +P Q +L SAT+
Sbjct: 127 TPGRILDHINRRTLKLE-NVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLLFSATM 185
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLL-----KLNL 264
+ + + + +P +++++ + + + + + E EK +L LL +L +
Sbjct: 186 PDPIRRIGERFMHSPELIRIKAKEMTAL-LIEQFFVKVHEKEKFDVLSRLLDVQAPELAI 244
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
+ G+T V+ + + ++ Y+ + ++ +L R + +F +G DV++A+D
Sbjct: 245 IFGRTKRRVDELSRALDMRGYVAEG------IHGDLTQAKRMSVLRKFKEGKIDVLVATD 298
Query: 325 EKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384
A RG+D V++V N+D P D + Y+HR GRT R
Sbjct: 299 VAA-----------------------RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG 335
Query: 385 NQGTALSFVSLRE 397
+G A++FV RE
Sbjct: 336 KEGMAITFVQPRE 348
>gi|302879666|ref|YP_003848230.1| DEAD/DEAH box helicase [Gallionella capsiferriformans ES-2]
gi|302582455|gb|ADL56466.1| DEAD/DEAH box helicase domain protein [Gallionella
capsiferriformans ES-2]
Length = 504
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 122/389 (31%), Positives = 200/389 (51%), Gaps = 34/389 (8%)
Query: 20 PFTFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPM 76
P TF + ++AIA G+ +PT +Q +AIPL+L D+L A+TG+GKT F +P+
Sbjct: 9 PVTFASLNLAEPIMRAIADAGYTQPTPVQAQAIPLVLAGGDLLAGAQTGTGKTAGFTLPV 68
Query: 77 IQKIINLKQTAQ--VQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVS 134
+ ++N + A + L+L+P++EL Q+ +++Q S +K + + V+++
Sbjct: 69 LH-LLNSRPAANPGAGRPRCLILTPTRELAAQVEESVQTYGKYLS--LKSLVMFGGVNIN 125
Query: 135 VQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLK 194
Q L + DI+VATP R L H+ KTLDL S++EI+I+DEAD + G+ D+K +L
Sbjct: 126 PQIKSLRGQVDILVATPGRLLDHVGQKTLDL-SAVEILILDEADRMLDMGFIRDIKKILA 184
Query: 195 FLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKAT 254
LPK Q +L SAT SE++ +L +L NP +++ H++AQ+ K+
Sbjct: 185 LLPKTRQNLLFSATFSEEIKTLSDGLLNNPGFVEVARRNTTSELVAQTVHMVAQK-LKSH 243
Query: 255 ILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQ 314
+L L+K N + + ++F T +L L I ++ AR A+ QF
Sbjct: 244 LLSHLIKHNDWK-QVLVFTRTKHGANRLAEKLNADGIPAAAIHGNKSQSARTKALSQFKD 302
Query: 315 GLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYI 374
G V++A+D A RG+D + +V+NF+ P + Y+
Sbjct: 303 GTMPVLVATDIAA-----------------------RGLDIDMLPHVVNFELPNVPEDYV 339
Query: 375 HRAGRTARGKNQGTALSFVSLREQDLMND 403
HR GRT R + G A+S V E + D
Sbjct: 340 HRIGRTGRAGSNGAAISLVDSEELQHLKD 368
>gi|116495993|ref|YP_807727.1| superfamily II DNA/RNA helicase [Lactobacillus casei ATCC 334]
gi|191639473|ref|YP_001988639.1| ATP-dependent RNA helicase [Lactobacillus casei BL23]
gi|227533029|ref|ZP_03963078.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus paracasei
subsp. paracasei ATCC 25302]
gi|239630391|ref|ZP_04673422.1| superfamily protein DNA and RNA helicase [Lactobacillus paracasei
subsp. paracasei 8700:2]
gi|385821240|ref|YP_005857627.1| DEAD/DEAH box helicase [Lactobacillus casei LC2W]
gi|385824432|ref|YP_005860774.1| DEAD/DEAH box helicase [Lactobacillus casei BD-II]
gi|409998335|ref|YP_006752736.1| DEAD/DEAH box helicase [Lactobacillus casei W56]
gi|417981730|ref|ZP_12622394.1| cold-shock DEAD-box protein A [Lactobacillus casei 12A]
gi|417984551|ref|ZP_12625171.1| cold-shock DEAD-box protein A [Lactobacillus casei 21/1]
gi|417987806|ref|ZP_12628359.1| cold-shock DEAD-box protein A [Lactobacillus casei 32G]
gi|417997288|ref|ZP_12637547.1| cold-shock DEAD-box protein A [Lactobacillus casei M36]
gi|418000194|ref|ZP_12640390.1| cold-shock DEAD-box protein A [Lactobacillus casei T71499]
gi|418003339|ref|ZP_12643426.1| cold-shock DEAD-box protein A [Lactobacillus casei UCD174]
gi|418006207|ref|ZP_12646168.1| cold-shock DEAD-box protein A [Lactobacillus casei UW1]
gi|418008368|ref|ZP_12648235.1| cold-shock DEAD-box protein A [Lactobacillus casei UW4]
gi|418011933|ref|ZP_12651680.1| cold-shock DEAD-box protein A [Lactobacillus casei Lc-10]
gi|418013012|ref|ZP_12652674.1| cold-shock DEAD-box protein A [Lactobacillus casei Lpc-37]
gi|116106143|gb|ABJ71285.1| Superfamily II DNA and RNA helicase [Lactobacillus casei ATCC 334]
gi|190713775|emb|CAQ67781.1| ATP-dependent RNA helicase [Lactobacillus casei BL23]
gi|227189430|gb|EEI69497.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus paracasei
subsp. paracasei ATCC 25302]
gi|239526674|gb|EEQ65675.1| superfamily protein DNA and RNA helicase [Lactobacillus paracasei
subsp. paracasei 8700:2]
gi|327383567|gb|AEA55043.1| DEAD box helicase family protein [Lactobacillus casei LC2W]
gi|327386759|gb|AEA58233.1| DEAD box helicase family protein [Lactobacillus casei BD-II]
gi|406359347|emb|CCK23617.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus casei W56]
gi|410521133|gb|EKP96098.1| cold-shock DEAD-box protein A [Lactobacillus casei 12A]
gi|410522198|gb|EKP97147.1| cold-shock DEAD-box protein A [Lactobacillus casei 32G]
gi|410525109|gb|EKQ00016.1| cold-shock DEAD-box protein A [Lactobacillus casei 21/1]
gi|410533048|gb|EKQ07736.1| cold-shock DEAD-box protein A [Lactobacillus casei M36]
gi|410537114|gb|EKQ11693.1| cold-shock DEAD-box protein A [Lactobacillus casei T71499]
gi|410542456|gb|EKQ16903.1| cold-shock DEAD-box protein A [Lactobacillus casei UCD174]
gi|410544369|gb|EKQ18698.1| cold-shock DEAD-box protein A [Lactobacillus casei UW1]
gi|410547046|gb|EKQ21289.1| cold-shock DEAD-box protein A [Lactobacillus casei UW4]
gi|410551341|gb|EKQ25407.1| cold-shock DEAD-box protein A [Lactobacillus casei Lc-10]
gi|410556209|gb|EKQ30122.1| cold-shock DEAD-box protein A [Lactobacillus casei Lpc-37]
Length = 502
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 113/373 (30%), Positives = 194/373 (52%), Gaps = 43/373 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AIA+ G+ E T IQ IPL+L KDV+ +A+TG+GKT AF +P++Q I ++ Q
Sbjct: 13 LKAIAQSGFEEATPIQAETIPLVLAGKDVIGQAQTGTGKTAAFGLPILQNIDKADRSIQ- 71
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
ALV+SP++EL Q + + L + +K + D+ Q L E P IVV
Sbjct: 72 ----ALVISPTRELAIQTQEELYRLGQ--DKKIKVQAVYGGADIRRQIRQLSEHPQIVVG 125
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H+ TL L+ +L+++++DEAD + G+ DD++ +++ +P Q +L SAT+
Sbjct: 126 TPGRILDHIGRHTLKLQ-NLKVLVLDEADEMLDMGFIDDIEKIVEQMPTARQTLLFSATI 184
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLL-----KLNL 264
++ L + + PV +K++ + + Y++ A++ EK ++ L L L
Sbjct: 185 PASIMRLTNKFMHEPVTVKIKAKELT-ADTVEQYYVRAKDYEKFDVMTRLFDVQDPDLAL 243
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
+ G+T V+ + + K + Y + ++ +L + R + QF G D ++A+D
Sbjct: 244 IFGRTKRRVDELTRGLKARGYRAEG------IHGDLTQQKRMSVLRQFKSGQLDFLVATD 297
Query: 325 EKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384
A RG+D V++V N+D P D Y+HR GRT R
Sbjct: 298 VAA-----------------------RGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAG 334
Query: 385 NQGTALSFVSLRE 397
++G +++FV+ E
Sbjct: 335 HKGVSVTFVTPNE 347
>gi|420406445|ref|ZP_14905615.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori CPY6311]
gi|393023282|gb|EJB24396.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori CPY6311]
Length = 492
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPK-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|420493609|ref|ZP_14992180.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-16]
gi|393112865|gb|EJC13385.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-16]
Length = 492
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPK-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDV---- 316
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 317 -------------------ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|390456495|ref|ZP_10242023.1| DEAD-box ATP-dependent RNA helicase ydbR [Paenibacillus peoriae
KCTC 3763]
Length = 526
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 116/374 (31%), Positives = 203/374 (54%), Gaps = 35/374 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
+QAI +LG+ E T IQ +IP+ LQ KD++ +A+TG+GKT AF IP+I KI +
Sbjct: 14 IQAITELGFEEATPIQAISIPIALQGKDMIGQAQTGTGKTAAFGIPLISKI-----SKND 68
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
++ +AL+++P++EL Q+ + I++L+ + ++ + I D+ Q L ++P I++
Sbjct: 69 EKIRALIMAPTRELAIQVAEEIEKLSR--FKGLRTLPIYGGQDIVRQIRALKKKPQIIIG 126
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H+ KT+ L+ + V++DEAD + G+ +D++++LK +P Q +L SAT+
Sbjct: 127 TPGRLLDHINRKTIKLE-DVNTVVLDEADEMLDMGFMEDIQSILKQVPDERQTMLFSATM 185
Query: 210 SEDVLSLKHLILRNPV-ILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGK 268
++ L L++P + + + AP+ + A+ + E +K L L+ + +
Sbjct: 186 PPNIKRLAEQFLKDPEHVSVIPKQVSAPLIEQAYIEV--PERQKFEALSRLIDMESPE-L 242
Query: 269 TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL 328
I+F T + +L L++ S L+ +L R + +F G DV++A+D A
Sbjct: 243 AIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVLVATDVAA- 301
Query: 329 ETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGT 388
RG+D V++V+NFD P D + Y+HR GRT R +G
Sbjct: 302 ----------------------RGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGE 339
Query: 389 ALSFVSLREQDLMN 402
A SFV+ RE D ++
Sbjct: 340 AWSFVTPREIDHLH 353
>gi|148263694|ref|YP_001230400.1| DEAD/DEAH box helicase [Geobacter uraniireducens Rf4]
gi|146397194|gb|ABQ25827.1| DEAD/DEAH box helicase domain protein [Geobacter uraniireducens
Rf4]
Length = 447
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 108/363 (29%), Positives = 190/363 (52%), Gaps = 33/363 (9%)
Query: 32 AIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQE 91
+ G+ PT IQ +AIP ++ +DV+ A+TG+GKT AFA+P++ +++ KQ
Sbjct: 15 GVTAAGYASPTPIQAQAIPPVMLGRDVMGLAQTGTGKTAAFALPILHRLMQGKQG----H 70
Query: 92 TKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATP 151
+AL+++P++EL Q+H++I L + ++ + + V+++ Q L +IVVA P
Sbjct: 71 VRALIVAPTRELAEQIHESISALGRQTR--LRSITVYGGVNINPQIQKLKSGVEIVVACP 128
Query: 152 ARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSE 211
R L H+ T+D+ S +E++++DEAD +F G+ D++ +LK LPK Q +L SAT+ +
Sbjct: 129 GRLLDHIGQGTIDV-SRVEVLVLDEADQMFDMGFFPDIRRILKHLPKQRQTLLFSATMPD 187
Query: 212 DVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTII 271
++ L H +L +PV +++ AP ++H ++ K +L LL+ + ++
Sbjct: 188 EIRRLAHEVLNDPVTVQVGN--TAPPVTVSHALYPVEQHLKTPLLLELLRHTDTE-SVLV 244
Query: 272 FVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETP 331
F T + +L LE+ L L R A+ F G + +++A+D A
Sbjct: 245 FTRTKHRAKRLGEQLEKAGYRAASLQGNLSQNRRQAALDGFRDGTFQILVATDIAA---- 300
Query: 332 QINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALS 391
RGID +S+V+N+D P + Y+HR GRT R G A +
Sbjct: 301 -------------------RGIDVSQISHVVNYDIPDTAEAYVHRIGRTGRAARSGDAFT 341
Query: 392 FVS 394
V+
Sbjct: 342 LVT 344
>gi|347524843|ref|YP_004831591.1| ATP-dependent RNA helicase [Lactobacillus ruminis ATCC 27782]
gi|345283802|gb|AEN77655.1| ATP-dependent RNA helicase [Lactobacillus ruminis ATCC 27782]
Length = 497
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 112/372 (30%), Positives = 201/372 (54%), Gaps = 33/372 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AI + G+ E T IQE IPL+L DV+ +A+TG+GKT AF +P++Q +++K+
Sbjct: 13 LKAIKRSGFEEATPIQEATIPLVLAGIDVIGQAQTGTGKTAAFGLPILQH-VDVKE---- 67
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ +A+V+SP++EL Q + + L V+ V D+ Q LL P I+V
Sbjct: 68 EHIQAIVISPTRELAIQTQEELYRLGKDKRAKVQVV--YGGADIRRQIKLLKHVPQILVG 125
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H+ KT+DL S ++ +++DEAD + G+ +D++A++K +P+ Q +L SAT+
Sbjct: 126 TPGRLLDHINRKTVDL-SHVKTLVLDEADEMLDMGFLEDIEAIIKNVPEERQTLLFSATM 184
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+ + S+ + P ++K++ + + Y + A+E EK I+ +L + + T
Sbjct: 185 PKTIRSIGEKFMHEPQVVKIKAKELT-TDLVDQYFVKAREYEKFDIMTRILDVQAPE-LT 242
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L LE + ++ +L + R + + +F +G D+++A+D A
Sbjct: 243 IVFGRTKRRVDELSKGLEARGYNAAGIHGDLTQQRRMNILKKFKEGRLDILVATDVAA-- 300
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
RG+D V++V N+D P D + Y+HR GRT R + G +
Sbjct: 301 ---------------------RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGHHGIS 339
Query: 390 LSFVSLREQDLM 401
++FV+ E + +
Sbjct: 340 VTFVTPNEMEYL 351
>gi|300690871|ref|YP_003751866.1| DEAD/DEAH box helicase [Ralstonia solanacearum PSI07]
gi|299077931|emb|CBJ50571.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
PSI07]
gi|344167288|emb|CCA79493.1| ATP-dependent RNA helicase, deaD-box family [blood disease
bacterium R229]
Length = 495
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 113/388 (29%), Positives = 198/388 (51%), Gaps = 33/388 (8%)
Query: 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII 81
TF L L+A+A+ G+ PT IQ AIP+++ +DV+ A+TG+GKT F++P+IQ ++
Sbjct: 19 TFGLHPDILRALAESGYTRPTPIQAAAIPVVVAGRDVMGAAQTGTGKTAGFSLPIIQNLL 78
Query: 82 ---NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEP 138
N + +AL+L+P++EL +Q++ N+ + + ++ + VD++ Q
Sbjct: 79 PEANTSASPARHPVRALILTPTRELADQVYDNVAKYGKYTA--LRSAVVFGGVDMNPQTE 136
Query: 139 LLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPK 198
L +I+VATP R L H++ ++++L S + ++++DEAD + G+ D++ ++ LP
Sbjct: 137 QLRRGVEILVATPGRLLDHVQQRSVNL-SQVRMLVLDEADRMLDMGFLPDLQRIINLLPA 195
Query: 199 LYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYT 258
Q +L SAT S ++ L LR+P +++ + A + + K L
Sbjct: 196 HRQTLLFSATFSPEIKKLAASYLRHPQTIEVAR-SNATADNVRQVIYTVPDGHKQAALVH 254
Query: 259 LLKLNLVQG---KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQG 315
LL+ QG + I+F N+ C +L LE+ I+ ++ + R + F QG
Sbjct: 255 LLRQRAEQGLPSQCIVFSNSKIGCSRLARALEREGINANAIHGDKTQTERMQTLEAFKQG 314
Query: 316 LYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIH 375
DV++A+D A RG+D + VINFD P + + Y+H
Sbjct: 315 TVDVLVATDVAA-----------------------RGLDISQMPCVINFDLPFNAEDYVH 351
Query: 376 RAGRTARGKNQGTALSFVSLREQDLMND 403
R GRT R G ALS + ++ L+ D
Sbjct: 352 RIGRTGRAGASGDALSLFAPGDERLLAD 379
>gi|294139497|ref|YP_003555475.1| ATP-dependent RNA helicase SrmB [Shewanella violacea DSS12]
gi|293325966|dbj|BAJ00697.1| ATP-dependent RNA helicase SrmB [Shewanella violacea DSS12]
Length = 408
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 119/372 (31%), Positives = 189/372 (50%), Gaps = 29/372 (7%)
Query: 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIIN 82
F L I L+++ +G +PT IQ++ IPL ++ KD+L RA TG+GKT +F +P IQ +I+
Sbjct: 6 FLLDPILLESLKAMGHNKPTTIQQQTIPLAMEQKDILARAPTGTGKTASFLLPAIQHLID 65
Query: 83 LKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVE 142
+ Q + LVL+P++EL +Q+H+ L+ D+ I+ + QE L
Sbjct: 66 FPRRFGGQ-ARVLVLTPTRELASQIHRYASHLSTDLDLDIAI--ITGGMPYGPQEDALKN 122
Query: 143 RPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQA 202
DI+VATP R + +L + + +E+ +IDEAD + G+ ++ + Q
Sbjct: 123 NVDILVATPGRLMEYLDKGNFNAE-EVEVFVIDEADRMLDMGFSAAVETLAIESVGRKQT 181
Query: 203 ILASATL-SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLK 261
+L SATL DV H +L NPV ++ E P HI ++ K +L +L+
Sbjct: 182 MLFSATLEGSDVGRFSHQLLTNPVKVEAEAPRSEKAKIHQWIHIADNKEHKFAMLCNILR 241
Query: 262 LNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVII 321
V +TI+FV T + L+ L++ I + ++ K R A+ +F +G +V++
Sbjct: 242 QEDVT-RTIVFVKTREGVASLEGLLQREGIICSFMRGDMEQKQRFQALGRFTKGEVNVLL 300
Query: 322 ASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTA 381
A+D A RGID +S+VINFD P Y+HR GRTA
Sbjct: 301 ATDVAA-----------------------RGIDVDDISHVINFDMPRSADTYVHRIGRTA 337
Query: 382 RGKNQGTALSFV 393
R +GTA+S V
Sbjct: 338 RAGAKGTAISLV 349
>gi|291001041|ref|XP_002683087.1| DEAD-box ATP-dependent RNA helicase [Naegleria gruberi]
gi|284096716|gb|EFC50343.1| DEAD-box ATP-dependent RNA helicase [Naegleria gruberi]
Length = 887
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 121/375 (32%), Positives = 190/375 (50%), Gaps = 44/375 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AI + G+ PT IQ R IPL+L+ +D+ A TGSGKT AF +P ++++ L +
Sbjct: 281 LKAIYEKGYEHPTPIQSRCIPLLLKGRDICASAMTGSGKTAAFILPTLERL--LYRDRSR 338
Query: 90 QETKALVLSPSKELCNQLHKN----IQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPD 145
+ET + L P++EL Q +++ +Q ++C C+ + + Q +L +P+
Sbjct: 339 KETLVVALLPTRELAAQCYEDCSHFLQYTDIRC-----CLITGGNLKIQKQIQVLQSKPE 393
Query: 146 IVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILA 205
I++ATP R + HL +E++I+DEAD + G+E +K +L +P Q +L
Sbjct: 394 IIIATPGRVVDHLLNSPNFRLDEVEVLILDEADRLLELGFEPQIKTILDHIPTARQTMLF 453
Query: 206 SATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDE----KATILYTLLK 261
SAT+++D+ L L L+NP+ + + S L I +DE K IL +L
Sbjct: 454 SATMTDDIEQLVKLSLKNPIRVSC-DSRTGVASGLTQEFIKLADDENIIMKQAILLSLCT 512
Query: 262 LNLVQGKTIIFVNTVDKCYKLK--LYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDV 319
+ + IIF NT KLK L+L+ K+S L+S L R +Y+F D
Sbjct: 513 RSF-PSEVIIFCNTKSMVRKLKMLLFLKGLKVSE--LSSSLTQAVRLKELYKFASHETDF 569
Query: 320 IIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGR 379
++ +D SRG+D + V VINFD PL+++ YIHR GR
Sbjct: 570 LVCTD-----------------------VASRGLDIKGVKTVINFDMPLNLKTYIHRVGR 606
Query: 380 TARGKNQGTALSFVS 394
TAR G A+S S
Sbjct: 607 TARAGASGVAVSMSS 621
>gi|421721165|ref|ZP_16160442.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R055a]
gi|407225949|gb|EKE95719.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R055a]
Length = 492
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPK-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRHASIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|425769747|gb|EKV08230.1| ATP-dependent RNA helicase , putative [Penicillium digitatum Pd1]
gi|425771396|gb|EKV09840.1| ATP-dependent RNA helicase , putative [Penicillium digitatum PHI26]
Length = 494
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 122/387 (31%), Positives = 192/387 (49%), Gaps = 37/387 (9%)
Query: 9 EPTLIQVYFELPFTFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGK 68
EP+ + + EL +L C +A K+G+ PT IQ +IPL LQ +D++ A TGSGK
Sbjct: 67 EPSAPKTFKELGLIDSL-C---EACDKMGYKAPTPIQSESIPLALQGRDIIGLAETGSGK 122
Query: 69 TGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDIS 128
T +F +P++Q ++ + Q LV++P++EL Q+ + L + +V+ +
Sbjct: 123 TASFVLPILQALME-----KPQPFFGLVMAPTRELAYQISLACESL--GATINVRSTTLV 175
Query: 129 EQVDVSVQEPLLVERPDIVVATPARALAHLK-AKTLDLKSSLEIVIIDEADLVFSFGYED 187
+D+ Q L ++P I+VATP R L HL+ K L++ L+ +++DEAD + +
Sbjct: 176 GGMDMVPQSIALGKKPHIIVATPGRLLDHLENTKGFSLRN-LKFLVMDEADRLLDMDFGP 234
Query: 188 DMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILA 247
+ +LK LP+ + L SATLS V SL+ L NP + + A V L +IL
Sbjct: 235 ILDKILKVLPRERRTFLFSATLSSKVESLQRASLSNPARVSISSSKYATVETLQQTYILR 294
Query: 248 QEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCH 307
K L LL + IIF+ TV + ++ L L+ ++ AR
Sbjct: 295 PYKHKDIYLVYLLH-EFIGQSVIIFMRTVHETQRVAFLLRGLGFGAIPLHGQMSQSARLG 353
Query: 308 AVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFP 367
A+ +F ++++A+D A RG+D V V+NFD P
Sbjct: 354 ALGKFRSKSREILVATDVAA-----------------------RGLDIPSVDCVLNFDLP 390
Query: 368 LDIQCYIHRAGRTARGKNQGTALSFVS 394
D + YIHR GRTAR GTA+SFV+
Sbjct: 391 TDSKTYIHRVGRTARAGKSGTAISFVT 417
>gi|420470152|ref|ZP_14968863.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-11]
gi|393087198|gb|EJB87868.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-11]
Length = 492
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPK-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYRSTALHGDMDQRDRRSSIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|420466568|ref|ZP_14965325.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori Hp H-9]
gi|393084966|gb|EJB85654.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori Hp H-9]
Length = 492
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPK-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|413963140|ref|ZP_11402367.1| DEAD/DEAH box helicase [Burkholderia sp. SJ98]
gi|413928972|gb|EKS68260.1| DEAD/DEAH box helicase [Burkholderia sp. SJ98]
Length = 493
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 115/386 (29%), Positives = 201/386 (52%), Gaps = 35/386 (9%)
Query: 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII- 81
F L L+A+ + G+ PT IQ +AIP++L +DV+ A+TG+GKT +F++P+IQ+++
Sbjct: 22 FGLSADILKAVRESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQRLLP 81
Query: 82 --NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL 139
N + +AL+L+P++EL +Q+ N+Q T ++ + VD++ Q
Sbjct: 82 SANTSASPARHPVRALMLTPTRELADQVAANVQ--TYSKHTPLRSTVVFGGVDMNPQSDA 139
Query: 140 LVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199
L +I++ATP R L H++ KT++L ++++++DEAD + G+ D++ +L LPK
Sbjct: 140 LRRGVEILIATPGRLLDHVQQKTVNL-GQVQMLVLDEADRMLDMGFLPDLQRILNLLPKE 198
Query: 200 YQAILASATLSEDVLSLKHLILRNPVILKL--EEPAIAPVSQLAHYHILAQEDEKATILY 257
Q +L SAT S ++ L LRNP +++ A V Q+ Y + E +K+ +
Sbjct: 199 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVRQIV-YEV--HESDKSGAVA 255
Query: 258 TLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLY 317
L++ ++ + I+F N+ +L LE+ I ++ + R A+ F +G
Sbjct: 256 QLIRERELK-QVIVFCNSKIGASRLARVLEKDGIVATAIHGDRSQSERMQALDAFKRGEI 314
Query: 318 DVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRA 377
+ ++A+D A RG+D + VINFD P + + Y+HR
Sbjct: 315 EALVATDVAA-----------------------RGLDIAELPAVINFDLPFNAEDYVHRI 351
Query: 378 GRTARGKNQGTALSFVSLREQDLMND 403
GRT R G ALS S E+ + D
Sbjct: 352 GRTGRAGASGDALSLCSANERKQLAD 377
>gi|145481669|ref|XP_001426857.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124393934|emb|CAK59459.1| unnamed protein product [Paramecium tetraurelia]
Length = 542
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 125/378 (33%), Positives = 199/378 (52%), Gaps = 47/378 (12%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++A + G+ PT IQ + +PL+L KDVL + TGSGKT AF +P++Q+ N K
Sbjct: 103 VKACHEQGYKYPTKIQAQIVPLVLAGKDVLASSCTGSGKTAAFLLPLMQRFGNTKSQ--- 159
Query: 90 QETKALVLSPSKELCNQLHKNIQELTM--KCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
+ +KAL++ P++EL Q + Q+L C+ + + V + QE L PDI+
Sbjct: 160 KYSKALIVMPTRELALQCFEMFQKLNQFSHCTAAL----VIGAVPIQQQEAELRRYPDII 215
Query: 148 VATPARALAHLKAK-TLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
+ATP R + +K ++DL SS+E++++DEAD + G+E ++K +L+ P+ Q +L S
Sbjct: 216 IATPGRIVDIMKNSFSIDL-SSIEVLVLDEADRLMEMGFEAEIKEILQQTPRDRQTVLVS 274
Query: 207 ATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAH---YHILA----QEDEKATILYTL 259
ATL V L L L PV + ++ V LA+ +IL +E ++ L L
Sbjct: 275 ATLKATVKQLSLLALHKPV-----KVSVDYVDGLAYGLKQYILRIDSDEEKDREATLIAL 329
Query: 260 LKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDV 319
L+ ++ KTIIFV T C++L++ L +S+C L+ L + R A F +G +
Sbjct: 330 LQQKFIE-KTIIFVRTKHDCHRLQILLGLKNLSSCELHGNLTQQQRIQAYEDFKEGKFQY 388
Query: 320 IIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGR 379
++A+D A RG+D V VINF+ P + YIHR GR
Sbjct: 389 LLATDLAA-----------------------RGLDIANVKAVINFEIPYETSRYIHRVGR 425
Query: 380 TARGKNQGTALSFVSLRE 397
TAR NQG +++ +E
Sbjct: 426 TARIGNQGVSVTICLKKE 443
>gi|115352406|ref|YP_774245.1| DEAD/DEAH box helicase [Burkholderia ambifaria AMMD]
gi|115282394|gb|ABI87911.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria AMMD]
Length = 497
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 116/386 (30%), Positives = 199/386 (51%), Gaps = 35/386 (9%)
Query: 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIIN 82
F L L+AIA+ G+ PT IQ +AIP++L +DV+ A+TG+GKT +F++P+IQ+++
Sbjct: 16 FGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQRLLP 75
Query: 83 LKQTAQV---QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL 139
T+ +AL+L+P++EL +Q+ N+ S ++ + VD++ Q
Sbjct: 76 QASTSASPARHPVRALILTPTRELADQVAANVHAYAKHTS--LRSAVVFGGVDMNPQMAE 133
Query: 140 LVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199
L +I++ATP R L H++ KT +L ++I+++DEAD + G+ D++ +L LPK
Sbjct: 134 LRRGVEILIATPGRLLDHVQQKTANL-GQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192
Query: 200 YQAILASATLSEDVLSLKHLILRNPVILKL--EEPAIAPVSQLAHYHILAQEDEKATILY 257
Q +L SAT S ++ L LRNP +++ A V+Q+ + +A+ D+ ++
Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYD--VAEGDKHGAVVQ 250
Query: 258 TLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLY 317
L L Q ++F N+ +L LE+ + ++ + R A+ F +G
Sbjct: 251 LLRDRGLKQ--VLVFCNSKIGASRLARNLERDGVVASAIHGDKSQLERMQALDAFKRGEI 308
Query: 318 DVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRA 377
+ ++A+D A RG+D + VINFD P + + Y+HR
Sbjct: 309 EALVATDVAA-----------------------RGLDIAELPAVINFDLPFNAEDYVHRI 345
Query: 378 GRTARGKNQGTALSFVSLREQDLMND 403
GRT R G ALS S E+ + D
Sbjct: 346 GRTGRAGATGDALSLCSPNERKQLAD 371
>gi|334131082|ref|ZP_08504848.1| ATP-dependent RNA helicase [Methyloversatilis universalis FAM5]
gi|333443712|gb|EGK71673.1| ATP-dependent RNA helicase [Methyloversatilis universalis FAM5]
Length = 535
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 111/375 (29%), Positives = 195/375 (52%), Gaps = 34/375 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AI++ G+ PT IQ++AIPL++ +D+L A+TG+GKT F +P++ ++N +
Sbjct: 17 LRAISEEGYTHPTPIQQKAIPLVIAGRDLLAAAQTGTGKTAGFTLPILHTLLNRPASIPA 76
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ LVL+P++EL Q+ ++++ T ++ + + V ++ Q L +R DI+VA
Sbjct: 77 GRPRVLVLTPTRELAAQVEESVR--TYGRHAKMRSMVMFGGVGMNPQLQALKQRVDILVA 134
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H+ K+LDL S +EI ++DEAD + G+ D++ V+ LPK+ Q +L SAT
Sbjct: 135 TPGRLLDHVGEKSLDL-SGVEIFVLDEADRMLDMGFIRDIRKVIAVLPKVRQTLLYSATF 193
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG-- 267
S ++ L H +L +P +++ P ++A + ++ +K +L L+ QG
Sbjct: 194 SPEIRELAHGLLNDPAEVEV-APRNTTAERVAQEVYMVEQKQKRHLLAHLIN----QGAW 248
Query: 268 -KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
+ ++F T +L L++ I+ ++ AR A+ F V++A+D
Sbjct: 249 SQVLVFTRTKHGANRLAEQLDKQGITAAAIHGNKSQNARTRALADFKSNTLRVLVATDIA 308
Query: 327 ALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQ 386
A RG+D + +V+NF+ P + Y+HR GRT R
Sbjct: 309 A-----------------------RGLDIDQLPHVVNFELPNVPEDYVHRIGRTGRAGAS 345
Query: 387 GTALSFVSLREQDLM 401
G A+S V E L+
Sbjct: 346 GAAISLVDREEAKLL 360
>gi|420503814|ref|ZP_15002344.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-62]
gi|393155203|gb|EJC55480.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-62]
Length = 489
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 30 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 86
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 87 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 141
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 142 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 200
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 201 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPE-KS 258
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 259 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATD----- 313
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 314 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 355
Query: 390 LSFVS 394
++ V+
Sbjct: 356 ITLVT 360
>gi|420454799|ref|ZP_14953629.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-14]
gi|393073149|gb|EJB73923.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-14]
Length = 491
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPK-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|218186850|gb|EEC69277.1| hypothetical protein OsI_38328 [Oryza sativa Indica Group]
Length = 802
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 120/376 (31%), Positives = 191/376 (50%), Gaps = 32/376 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A LG+ +PT IQ IPL L +D+ A TGSGKT AF++P+++++ L + +V
Sbjct: 206 LRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLERL--LFRPKRV 263
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ L+L+P++EL +H I++L D++C I + VQE L PDIVVA
Sbjct: 264 PAIRVLILTPTRELAAPVHSMIEKLAQFT--DIRCCLIVGGLSTKVQEVALRSMPDIVVA 321
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + HL+ L I+I+DEAD + G+ +++ +++ P+ Q +L SAT+
Sbjct: 322 TPGRIIDHLRNSLSVGLEDLAILILDEADRLLELGFSAEIQELIRMCPRRRQTMLFSATM 381
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHI---LAQEDEKATILYTLLKLNLVQ 266
+E++ L L L PV L+ +P++ + L + A+E + +L L L +
Sbjct: 382 TEEINELVTLSLNKPVRLEA-DPSLKRPATLTEEVVRIRRAREANQEAVLLALC-LKTFK 439
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
K IIF T ++LK+ + L+ L R A+ F + D +IA+D
Sbjct: 440 DKVIIFSGTKHSAHRLKIIFGLSGMKAAELHGNLTQAQRLEALELFKKQEVDFLIATDVA 499
Query: 327 ALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQ 386
A RGID V VINF P D + Y+HR GRTAR +
Sbjct: 500 A-----------------------RGIDIVGVRTVINFSCPRDARTYLHRVGRTARAGRE 536
Query: 387 GTALSFVSLREQDLMN 402
G A++FV+ ++ L+
Sbjct: 537 GYAVTFVTDDDRSLLK 552
>gi|429085612|ref|ZP_19148582.1| ATP-dependent RNA helicase RhlE [Cronobacter condimenti 1330]
gi|426545220|emb|CCJ74623.1| ATP-dependent RNA helicase RhlE [Cronobacter condimenti 1330]
Length = 474
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 116/378 (30%), Positives = 194/378 (51%), Gaps = 36/378 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AIA+ G+ EPT IQ +AIP++L KD++ A+TG+GKT F +P++Q++ +
Sbjct: 13 LRAIAEQGYNEPTPIQRQAIPVVLSGKDLMASAQTGTGKTAGFTLPLLQRLTANEPQKGR 72
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ +AL+L+P++EL Q+ +N++E + D++ + + V ++ Q L D+++A
Sbjct: 73 RPVRALILTPTRELAAQVGENVREYSKYL--DIRSLVVFGGVSINPQMMKLRGGVDVLIA 130
Query: 150 TPARA--LAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
TP R L H A LD +E++++DEAD + G+ D++ VL LP Q +L SA
Sbjct: 131 TPGRLLDLEHQNAVKLD---QVEVLVLDEADRMLDMGFIHDIRRVLAKLPPKRQNLLFSA 187
Query: 208 TLSEDVLSLKHLILRNP--VILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLV 265
T S+D+ L +LRNP V + A V+Q H H + ++ ++ + Y + N
Sbjct: 188 TFSDDIKGLAEKLLRNPEEVAVARRNTASGQVTQ--HVHFVDKKRKRELLSYLIGDGNWQ 245
Query: 266 QGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE 325
Q ++F T L L + I+ ++ AR A+ F G V++A+D
Sbjct: 246 Q--VLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKTGGIRVLVATDI 303
Query: 326 KALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKN 385
A RGID + + +V+N++ P + Y+HR GRT R
Sbjct: 304 AA-----------------------RGIDIEELPHVVNYELPNVPEDYVHRIGRTGRAAA 340
Query: 386 QGTALSFVSLREQDLMND 403
G ALS V + E L+ D
Sbjct: 341 TGEALSLVCVDEHKLLRD 358
>gi|421714416|ref|ZP_16153737.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R036d]
gi|407218101|gb|EKE87930.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R036d]
Length = 492
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEVQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPK-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|425790600|ref|YP_007018517.1| ATP-dependent RNA helicase [Helicobacter pylori Aklavik86]
gi|425628915|gb|AFX89455.1| ATP-dependent RNA helicase [Helicobacter pylori Aklavik86]
Length = 492
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 191/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPK-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F+ T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFMRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|420435575|ref|ZP_14934574.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-27]
gi|393051434|gb|EJB52385.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-27]
Length = 491
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNADITQRFYVI-NEHERAEAIMRLLDTQAPE-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|187923247|ref|YP_001894889.1| DEAD/DEAH box helicase [Burkholderia phytofirmans PsJN]
gi|187714441|gb|ACD15665.1| DEAD/DEAH box helicase domain protein [Burkholderia phytofirmans
PsJN]
Length = 489
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 112/388 (28%), Positives = 199/388 (51%), Gaps = 34/388 (8%)
Query: 22 TFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQ 78
TF F + L+A+ + G+ PT IQE+AIP++L +D++ A+TG+GKT +F++P+IQ
Sbjct: 12 TFDQFGLAPDILKAVKESGYTIPTPIQEQAIPVVLAGRDMMGAAQTGTGKTASFSLPIIQ 71
Query: 79 KIINLKQTAQV---QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSV 135
+++ T+ +AL+L+P++EL +Q+ N+Q + ++ + VD++
Sbjct: 72 RLLPQASTSASPARHPVRALILTPTRELADQVAANVQAYAKHTA--LRSAVVFGGVDMNP 129
Query: 136 QEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKF 195
Q L +I++ATP R L H++ KT +L ++I+++DEAD + G+ D++ +L
Sbjct: 130 QSEQLRRGVEILIATPGRLLDHVQQKTANL-GQVQILVLDEADRMLDMGFLPDLQRILNL 188
Query: 196 LPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATI 255
LPK Q +L SAT S ++ L LRNP +++ + + +A+ D+ +
Sbjct: 189 LPKERQTLLFSATFSGEIKKLAATYLRNPQTIEVARSNSTATNVTQVVYEVAEGDKTGAV 248
Query: 256 LYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQG 315
+ + + L Q I+F N+ +L LE+ + ++ + R A+ F +G
Sbjct: 249 VQLIRERGLKQ--VIVFCNSKIGASRLARSLERDGVVATAIHGDRTQNERMQALDAFKRG 306
Query: 316 LYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIH 375
+ ++A+D A RG+D + VINFD P + + Y+H
Sbjct: 307 EIEALVATDVAA-----------------------RGLDIAELPAVINFDLPFNAEDYVH 343
Query: 376 RAGRTARGKNQGTALSFVSLREQDLMND 403
R GRT R G ALS S E+ + D
Sbjct: 344 RIGRTGRAGASGDALSLCSPNERKQLAD 371
>gi|348667582|gb|EGZ07407.1| hypothetical protein PHYSODRAFT_527947 [Phytophthora sojae]
Length = 773
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 110/373 (29%), Positives = 192/373 (51%), Gaps = 42/373 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++AI+ +G+ +PT IQ+RAIP+ L KD+ A+TGSGKT AF +P+++++ ++ +V
Sbjct: 161 MRAISHIGFEKPTPIQQRAIPIALTGKDICASAQTGSGKTAAFLLPILERLQF--RSRRV 218
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
Q T+ +++ P +EL Q ++L D+ C + + QE L RPD+VV
Sbjct: 219 QSTRTMIICPVRELATQCQSMFEQLARFT--DITCSLAVGGLPLKAQEAELRNRPDVVVC 276
Query: 150 TPARALAHLK-AKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
TP R + HL+ +K++ + LEI+++DEAD + G+ +++ +++ P Q +L SAT
Sbjct: 277 TPGRMIDHLRNSKSVHM-DDLEILVLDEADRLLELGFTEEVLELVRMCPVQRQTMLFSAT 335
Query: 209 LSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILA-------QEDEKATILYTLLK 261
++ V L L ++ PV + + P+ +A + + +ED++ IL L
Sbjct: 336 MTSKVDQLIDLSMKRPVRISTD-----PLFDMAKHLVQEFVRIRPNREDDREAILLALCT 390
Query: 262 LNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVII 321
+ TI+F+ T +++ + I L+ L + R A+ +F G D+++
Sbjct: 391 RTF-RTNTIVFMETKSHAHRMMIIFGLAGIKAAELHGNLMQRERLEALQKFRDGTVDILL 449
Query: 322 ASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTA 381
+D A RGID + V VIN++ P DI Y+HR GRTA
Sbjct: 450 CTDIAA-----------------------RGIDVRGVHAVINYEMPKDITTYVHRVGRTA 486
Query: 382 RGKNQGTALSFVS 394
R G A++ S
Sbjct: 487 RAGRNGRAVTLTS 499
>gi|344171941|emb|CCA84567.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia syzygii R24]
Length = 481
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 113/388 (29%), Positives = 198/388 (51%), Gaps = 33/388 (8%)
Query: 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII 81
TF L L+A+A+ G+ PT IQ AIP+++ +DV+ A+TG+GKT F++P+IQ ++
Sbjct: 5 TFGLHPDILRALAESGYTRPTPIQAAAIPVVVAGRDVMGAAQTGTGKTAGFSLPIIQNLL 64
Query: 82 ---NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEP 138
N + +AL+L+P++EL +Q++ N+ + + ++ + VD++ Q
Sbjct: 65 PEANTSASPARHPVRALILTPTRELADQVYDNVAKYGKYTA--LRSAVVFGGVDMNPQTE 122
Query: 139 LLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPK 198
L +I+VATP R L H++ ++++L S + ++++DEAD + G+ D++ ++ LP
Sbjct: 123 QLRRGVEILVATPGRLLDHVQQRSVNL-SQVRMLVLDEADRMLDMGFLPDLQRIINLLPA 181
Query: 199 LYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYT 258
Q +L SAT S ++ L LR+P +++ + A + + K L
Sbjct: 182 HRQTLLFSATFSPEIKKLAASYLRHPQTIEVAR-SNATADNVRQVIYTVPDGHKQAALVH 240
Query: 259 LLKLNLVQG---KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQG 315
LL+ QG + I+F N+ C +L LE+ I+ ++ + R + F QG
Sbjct: 241 LLRQRAEQGLPSQCIVFSNSKIGCSRLARALEREGINANAIHGDKTQTERMQTLEAFKQG 300
Query: 316 LYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIH 375
DV++A+D A RG+D + VINFD P + + Y+H
Sbjct: 301 TVDVLVATDVAA-----------------------RGLDISQMPCVINFDLPFNAEDYVH 337
Query: 376 RAGRTARGKNQGTALSFVSLREQDLMND 403
R GRT R G ALS + ++ L+ D
Sbjct: 338 RIGRTGRAGASGDALSLFAPGDERLLAD 365
>gi|15644875|ref|NP_207045.1| DEAD/DEAH box helicase [Helicobacter pylori 26695]
gi|410023485|ref|YP_006892738.1| DEAD/DEAH box helicase [Helicobacter pylori Rif1]
gi|410501253|ref|YP_006935780.1| DEAD/DEAH box helicase [Helicobacter pylori Rif2]
gi|410681772|ref|YP_006934174.1| DEAD/DEAH box helicase [Helicobacter pylori 26695]
gi|419416982|ref|ZP_13957482.1| DEAD/DEAH box helicase [Helicobacter pylori P79]
gi|2313340|gb|AAD07315.1| ATP-dependent RNA helicase, DEAD-box family (deaD) [Helicobacter
pylori 26695]
gi|384374141|gb|EIE29566.1| DEAD/DEAH box helicase [Helicobacter pylori P79]
gi|409893413|gb|AFV41471.1| DEAD/DEAH box helicase [Helicobacter pylori 26695]
gi|409895142|gb|AFV43064.1| DEAD/DEAH box helicase [Helicobacter pylori Rif1]
gi|409896804|gb|AFV44658.1| DEAD/DEAH box helicase [Helicobacter pylori Rif2]
Length = 492
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPK-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDV---- 316
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 317 -------------------ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|420423148|ref|ZP_14922221.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-4]
gi|393042428|gb|EJB43437.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-4]
Length = 491
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPE-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|420486880|ref|ZP_14985488.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-8]
gi|420520767|ref|ZP_15019198.1| DEAD-box ATP-dependent RNA helicase CshA [Helicobacter pylori Hp
P-8b]
gi|393104433|gb|EJC04990.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-8]
gi|393127354|gb|EJC27799.1| DEAD-box ATP-dependent RNA helicase CshA [Helicobacter pylori Hp
P-8b]
Length = 492
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPE-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|386332888|ref|YP_006029057.1| atp-dependent rna helicase protein [Ralstonia solanacearum Po82]
gi|334195335|gb|AEG68520.1| atp-dependent rna helicase protein [Ralstonia solanacearum Po82]
Length = 495
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 116/400 (29%), Positives = 203/400 (50%), Gaps = 36/400 (9%)
Query: 10 PTLIQVYFELPFTFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKT 69
P+ V F+ TF L L+A+ + G+ PT IQ AIP+++ +DV+ A+TG+GKT
Sbjct: 10 PSSDSVTFD---TFGLHPDILRALTESGYTRPTPIQAAAIPVVVGGRDVMGAAQTGTGKT 66
Query: 70 GAFAIPMIQKII---NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVD 126
F++P+IQ ++ N + +AL+L+P++EL +Q++ N+ + + ++
Sbjct: 67 AGFSLPIIQNLLPEANTSASPARHPVRALILTPTRELADQVYDNVAKYAKYTA--LRSAV 124
Query: 127 ISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYE 186
+ VD++ Q L +I+VATP R L H++ ++++L S + ++++DEAD + G+
Sbjct: 125 VFGGVDMNPQTEQLRRGVEILVATPGRLLDHVQQRSVNL-SQVRMLVLDEADRMLDMGFL 183
Query: 187 DDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHIL 246
D++ ++ LP Q +L SAT S ++ L LR+P +++ + A +
Sbjct: 184 PDLQRIINLLPAHRQTLLFSATFSPEIKKLAASYLRHPQTIEVAR-SNATADNVRQVIYT 242
Query: 247 AQEDEKATILYTLLKLNLVQG---KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAK 303
+ K L LL+ QG + I+F N+ C +L LE+ KI+ ++ +
Sbjct: 243 VPDGHKQAALVHLLRQRAEQGLPSQCIVFSNSKIGCSRLARALEREKINANAIHGDKTQI 302
Query: 304 ARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVIN 363
R + F QG DV++A+D A RG+D + VIN
Sbjct: 303 ERMQTLEAFKQGTVDVLVATDVAA-----------------------RGLDISQMPCVIN 339
Query: 364 FDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND 403
FD P + + Y+HR GRT R G ALS + ++ L+ D
Sbjct: 340 FDLPFNAEDYVHRIGRTGRAGASGDALSLFAPGDERLLAD 379
>gi|170701603|ref|ZP_02892549.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
IOP40-10]
gi|170133486|gb|EDT01868.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
IOP40-10]
Length = 571
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 117/386 (30%), Positives = 200/386 (51%), Gaps = 35/386 (9%)
Query: 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIIN 82
F L L+AIA+ G+ PT IQ +AIP++L +DV+ A+TG+GKT +F++P+IQ+++
Sbjct: 90 FGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQRLLP 149
Query: 83 LKQTAQV---QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL 139
T+ +AL+L+P++EL +Q+ N+ S ++ + VD++ Q
Sbjct: 150 QASTSASPARHPVRALILTPTRELADQVAANVHAYAKHTS--LRSAVVFGGVDMNPQMAE 207
Query: 140 LVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199
L +I++ATP R L H++ KT +L ++I+++DEAD + G+ D++ +L LPK
Sbjct: 208 LRRGVEILIATPGRLLDHVQQKTANL-GQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 266
Query: 200 YQAILASATLSEDVLSLKHLILRNPVILKL--EEPAIAPVSQLAHYHILAQEDEKATILY 257
Q +L SAT S ++ L LRNP +++ A V+Q+ + +A+ D+ + ++
Sbjct: 267 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQI--VYDVAEGDKHSAVVQ 324
Query: 258 TLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLY 317
L L Q I+F N+ +L LE+ + ++ + R A+ F +G
Sbjct: 325 LLRDRGLKQ--VIVFCNSKIGASRLARNLERDGVVASAIHGDKSQLERMQALDAFKRGEI 382
Query: 318 DVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRA 377
+ ++A+D A RG+D + VINFD P + + Y+HR
Sbjct: 383 EALVATDVAA-----------------------RGLDIVELPAVINFDLPFNAEDYVHRI 419
Query: 378 GRTARGKNQGTALSFVSLREQDLMND 403
GRT R G ALS S E+ + D
Sbjct: 420 GRTGRAGATGDALSLCSPNERKQLAD 445
>gi|420458128|ref|ZP_14956938.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-26]
gi|393075649|gb|EJB76403.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-26]
Length = 492
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPK-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDV---- 316
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 317 -------------------ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|420485287|ref|ZP_14983905.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-4]
gi|420515778|ref|ZP_15014241.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-4c]
gi|420517482|ref|ZP_15015936.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-4d]
gi|393103422|gb|EJC03985.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-4]
gi|393122981|gb|EJC23450.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-4d]
gi|393124077|gb|EJC24545.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-4c]
Length = 491
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMCLLDTQAPK-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|347818470|ref|ZP_08871904.1| DEAD/DEAH box helicase domain-containing protein [Verminephrobacter
aporrectodeae subsp. tuberculatae At4]
Length = 486
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 115/376 (30%), Positives = 194/376 (51%), Gaps = 31/376 (8%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV- 89
+A+A++G+ T IQ +AIP++L +DV+ A+TG+GKT AF++P++Q+++ + +
Sbjct: 16 RAVAEMGYESMTPIQAQAIPVVLSGQDVMGAAQTGTGKTAAFSLPLLQRLLKHESGSASP 75
Query: 90 --QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
+ALVL P++EL +Q+ + I L K +R ++ + +D+ Q L + +++
Sbjct: 76 ARHPVRALVLLPTRELADQVARQIA-LYAKHTR-LRSTVVFGGMDMKPQTIELKKGVEVL 133
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
VATP R L H++AK L + +E V++DEAD + G+ D++ +L +LPK +L SA
Sbjct: 134 VATPGRLLDHIEAKNTVL-NQVEYVVLDEADRMLDIGFLPDLQRILSYLPKQRTTLLFSA 192
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
T S ++ L L NPV +++ P + ++ ED++ I L L Q
Sbjct: 193 TFSPEIRRLAGSYLDNPVTIEVARPNETAATVEQRFYSANDEDKRRAIHQVLRTHGLTQA 252
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
IFVN+ C +L LE+ + T L+ + R A+ F G D+++ +D A
Sbjct: 253 --FIFVNSKLGCARLARSLEREGLRTTALHGDKSQDERLKALEAFKSGAVDLLVCTDVAA 310
Query: 328 LETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQG 387
RG+D + V V NFD P + + Y+HR GRT R G
Sbjct: 311 -----------------------RGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASG 347
Query: 388 TALSFVSLREQDLMND 403
A + VS + L+ D
Sbjct: 348 LAFTLVSASDARLVAD 363
>gi|421711256|ref|ZP_16150599.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R030b]
gi|407212405|gb|EKE82267.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R030b]
Length = 491
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPK-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|420492318|ref|ZP_14990892.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-15]
gi|420526342|ref|ZP_15024743.1| DEAD-box ATP-dependent RNA helicase CshA [Helicobacter pylori Hp
P-15b]
gi|393106757|gb|EJC07300.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-15]
gi|393131647|gb|EJC32070.1| DEAD-box ATP-dependent RNA helicase CshA [Helicobacter pylori Hp
P-15b]
Length = 492
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEVQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPK-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDV---- 316
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 317 -------------------ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|420436804|ref|ZP_14935796.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-28]
gi|393054544|gb|EJB55472.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-28]
Length = 492
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPK-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|17546930|ref|NP_520332.1| ATP-dependent RNA helicase [Ralstonia solanacearum GMI1000]
gi|17429230|emb|CAD15918.1| probable atp-dependent rna helicase protein [Ralstonia solanacearum
GMI1000]
Length = 495
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 113/393 (28%), Positives = 200/393 (50%), Gaps = 36/393 (9%)
Query: 20 PFTFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPM 76
P TF F + L+A+A+ G+ T IQ AIP+++ +DV+ A+TG+GKT F++P+
Sbjct: 14 PVTFDTFGLHPDILRALAESGYTRATPIQAAAIPVVIAGRDVMGAAQTGTGKTAGFSLPI 73
Query: 77 IQKII---NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDV 133
IQ ++ N + +AL+L+P++EL +Q++ N+ + + ++ + VD+
Sbjct: 74 IQNLLPDANTSASPARHPVRALILTPTRELADQVYDNVAKYAKHTA--LRSAVVFGGVDM 131
Query: 134 SVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVL 193
+ Q L +++VATP R L H++ ++++L S + ++++DEAD + G+ D++ ++
Sbjct: 132 NPQTEQLRRGVEVLVATPGRLLDHVQQRSVNL-SQVRMLVLDEADRMLDMGFLPDLQRII 190
Query: 194 KFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKA 253
LP Q +L SAT S ++ L LR+P +++ + A + + K
Sbjct: 191 NLLPAHRQTLLFSATFSPEIKKLAASYLRHPQTIEVAR-SNATADNVRQVIYTVPDGHKQ 249
Query: 254 TILYTLLKLNLVQG---KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVY 310
L LL+ QG + I+F N+ C +L LE+ KI+ ++ + R +
Sbjct: 250 AALVHLLRQRAEQGLPSQCIVFSNSKIGCSRLARALEREKINANAIHGDKTQTERMQTLE 309
Query: 311 QFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDI 370
F QG DV++A+D A RG+D + VINFD P +
Sbjct: 310 AFKQGTVDVLVATDVAA-----------------------RGLDISQMPCVINFDLPFNA 346
Query: 371 QCYIHRAGRTARGKNQGTALSFVSLREQDLMND 403
+ Y+HR GRT R G ALS + ++ L+ D
Sbjct: 347 EDYVHRIGRTGRAGASGDALSLFAPGDERLLAD 379
>gi|421709650|ref|ZP_16149009.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R018c]
gi|421722902|ref|ZP_16162159.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R056a]
gi|407211095|gb|EKE80964.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R018c]
gi|407225270|gb|EKE95041.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R056a]
Length = 492
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEVQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPK-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDV---- 316
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 317 -------------------ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|289434134|ref|YP_003464006.1| ATP-dependent RNA helicase [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|289170378|emb|CBH26918.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Listeria
seeligeri serovar 1/2b str. SLCC3954]
Length = 526
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 109/373 (29%), Positives = 201/373 (53%), Gaps = 43/373 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++++ ++G+ E T IQE+ IPL L KD++ +A+TG+GKT AF +PMI KI Q
Sbjct: 16 VKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHKIDQKSNNVQ- 74
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
AL+++P++EL Q+ + + +L+ + V+ + + D+S Q L + P IVV
Sbjct: 75 ----ALIIAPTRELAIQVSEELYKLS--YDKHVRVLAVYGGSDISRQIRSLKKFPQIVVG 128
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H+ +TL L+ ++E +++DEAD + + G+ DD++ +LK +P Q +L SAT+
Sbjct: 129 TPGRILDHINRRTLKLE-NVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLLFSATM 187
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLL-----KLNL 264
+ + + + +P +++++ + + + + + E EK +L LL +L +
Sbjct: 188 PDPIRRIGERFMHSPELIRIKAKEMTAL-LIEQFFVKVHEKEKFDVLSRLLDVQAPELAI 246
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
+ G+T V+ + + ++ Y+ + ++ +L R + +F +G DV++A+D
Sbjct: 247 IFGRTKRRVDELSRALDMRGYVAEG------IHGDLTQAKRMSVLRKFKEGKIDVLVATD 300
Query: 325 EKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384
A RG+D V++V N+D P D + Y+HR GRT R
Sbjct: 301 VAA-----------------------RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG 337
Query: 385 NQGTALSFVSLRE 397
+G A++FV RE
Sbjct: 338 KEGMAITFVQPRE 350
>gi|423299961|ref|ZP_17277986.1| hypothetical protein HMPREF1057_01127 [Bacteroides finegoldii
CL09T03C10]
gi|408473770|gb|EKJ92292.1| hypothetical protein HMPREF1057_01127 [Bacteroides finegoldii
CL09T03C10]
Length = 421
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 119/372 (31%), Positives = 199/372 (53%), Gaps = 34/372 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+ + + E T IQE+AIP+IL+ KD++ A+TG+GKT AF +P++ K+
Sbjct: 13 LEALDAMRFDECTPIQEQAIPIILEGKDLIAVAQTGTGKTAAFLLPVLNKLSEGNHPEDA 72
Query: 90 QETKALVLSPSKELCNQLHKNIQELT--MKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
+++SP++EL Q+ + ++ + M S V ++ + Q+ L D+V
Sbjct: 73 --INCIIMSPTRELAQQIDQQMEGFSYFMPVS-SVAVYGGNDGILFEQQKKGLTLGADVV 129
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
+ATP R +AHL +DL S + I+DEAD + G+ DD+ ++K+LPK Q I+ SA
Sbjct: 130 IATPGRLIAHLSLGYVDL-SKVSYFILDEADRMLDMGFYDDIMQIVKYLPKERQTIMFSA 188
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIA-PVSQLAHYHILAQEDEKATILYTLLKLNLVQ 266
T+ + L + IL NP +KL A++ P ++ + E++K I+ +L + V
Sbjct: 189 TMPAKIQQLANTILNNPSEIKL---AVSKPAEKIIQAAYVCYENQKLGIIRSLFA-DEVP 244
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
+ IIF ++ K ++ L K++ ++S+L R +++F G ++++A+D
Sbjct: 245 ERVIIFASSKIKVKEVAKALMAMKLNVGEMHSDLEQAQRETVMHEFKAGRVNILVATDI- 303
Query: 327 ALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQ 386
V+RGID + VINFD P D + Y+HR GRTAR N
Sbjct: 304 ----------------------VARGIDIDDIRLVINFDVPHDSEDYVHRIGRTARANND 341
Query: 387 GTALSFVSLREQ 398
G AL+FVS +EQ
Sbjct: 342 GVALTFVSEKEQ 353
>gi|420506131|ref|ZP_15004646.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-74]
gi|393115636|gb|EJC16146.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-74]
Length = 491
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPE-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDV---- 316
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 317 -------------------ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|255935375|ref|XP_002558714.1| Pc13g02750 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211583334|emb|CAP91344.1| Pc13g02750 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 493
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 117/365 (32%), Positives = 182/365 (49%), Gaps = 33/365 (9%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ 90
+A K+G+ PT IQ +IPL LQ +D++ A TGSGKT +F +P++Q ++ + Q
Sbjct: 84 EACDKMGYKAPTPIQSESIPLALQGRDIIGLAETGSGKTASFVLPILQALME-----KPQ 138
Query: 91 ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVAT 150
LVL+P++EL Q+ + L + +V+ + +D+ Q L ++P I+VAT
Sbjct: 139 SFFGLVLAPTRELAYQISLACESL--GATINVRSTTLVGGMDMVPQSIALGKKPHIIVAT 196
Query: 151 PARALAHLK-AKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
P R L HL+ K L+S L+ +++DEAD + + + +LK LP+ + L SATL
Sbjct: 197 PGRLLDHLENTKGFSLRS-LKFLVMDEADRLLDMDFGPILDKILKVLPRERRTFLFSATL 255
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
S V SL+ L NP + + A V L ++L K L LL +
Sbjct: 256 SSKVESLQRASLSNPARVSISSSKYATVETLQQTYLLRPYKHKDIYLVYLLH-EFIGQSV 314
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
IIF+ TV + ++ L L+ ++ AR A+ +F ++++A+D A
Sbjct: 315 IIFMRTVHETQRVAFLLRGLGFGAIPLHGQMSQSARLGALGKFRSKSREILVATDVAA-- 372
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
RG+D V V+NFD P D + YIHR GRTAR GTA
Sbjct: 373 ---------------------RGLDIPSVDCVLNFDLPTDSKTYIHRVGRTARAGKSGTA 411
Query: 390 LSFVS 394
+SFV+
Sbjct: 412 ISFVT 416
>gi|438000180|ref|YP_007183913.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
blastocrithidii (ex Strigomonas culicis)]
gi|451813113|ref|YP_007449566.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
blastocrithidii TCC012E]
gi|429339414|gb|AFZ83836.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
blastocrithidii (ex Strigomonas culicis)]
gi|451779082|gb|AGF49962.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
blastocrithidii TCC012E]
Length = 447
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 115/362 (31%), Positives = 197/362 (54%), Gaps = 33/362 (9%)
Query: 35 KLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII---NLKQTAQVQE 91
++G+++PTLIQE AIP IL D + A+TG+GKT AF +P+I +++ N +
Sbjct: 31 EIGYVKPTLIQESAIPNILSGADFIGAAQTGTGKTAAFVLPIINRLVPFANNSISPARHL 90
Query: 92 TKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATP 151
++L+L P++EL +Q+++ ++ + +++ + + VD+ Q+ LL + +I+VATP
Sbjct: 91 LRSLILVPTRELADQVYECVKLYSKNT--NLRSLVLFGGVDLEHQKDLLHKGCEILVATP 148
Query: 152 ARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSE 211
R +AH+ + + L +++I+++DEAD + G+ D+ +++ LPK Q++L SAT SE
Sbjct: 149 GRLIAHIIQRNVSL-VNVDILVLDEADRMLDMGFIPDVDRIVRMLPKKRQSLLFSATFSE 207
Query: 212 DVLSLKHLILRNPVILKLEEP-AIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTI 270
DV L L++PV + P +IA + Y +L+ E A IL+ + + I
Sbjct: 208 DVRKLGLTYLKDPVEADVTVPNSIADTVKQISYKVLSNEKYDA-ILFLIRSTEMKH--VI 264
Query: 271 IFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALET 330
+F NT KL YL KIS ++ + K R + F DV++A+D
Sbjct: 265 VFTNTKIGANKLASYLSSNKISADCIHGDRTQKERIRILNDFKSSNLDVLVATDV----- 319
Query: 331 PQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTAL 390
V+RG+D +S+V+NFD P + + Y+HR GRT R N+G A+
Sbjct: 320 ------------------VARGLDIAGISHVVNFDIPHNAEDYVHRIGRTGRANNEGIAV 361
Query: 391 SF 392
S
Sbjct: 362 SL 363
>gi|384892304|ref|YP_005766397.1| ATP-dependent RNA helicase [Helicobacter pylori Cuz20]
gi|308061601|gb|ADO03489.1| ATP-dependent RNA helicase [Helicobacter pylori Cuz20]
Length = 492
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADRILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPK-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|317127486|ref|YP_004093768.1| DEAD/DEAH box helicase [Bacillus cellulosilyticus DSM 2522]
gi|315472434|gb|ADU29037.1| DEAD/DEAH box helicase domain protein [Bacillus cellulosilyticus
DSM 2522]
Length = 500
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 114/370 (30%), Positives = 200/370 (54%), Gaps = 33/370 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++AI K+G+ E T IQE+ IPL + +D++ +A+TG+GKT AF IP +++++ +
Sbjct: 14 VEAIEKMGFEETTPIQEKVIPLGKEGQDIIGQAQTGTGKTVAFGIPCVEQVV-----VEE 68
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ +ALVL+P++EL Q+ + + +L + +K + I +++ Q L +RP I+VA
Sbjct: 69 KHPQALVLTPTRELAIQVAEELNKLGQ--VKGIKALPIYGGQEITRQITALKKRPQIIVA 126
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + H++ KT+ L+IV++DEAD + S G+ +D++ +L+ +P Q +L SAT+
Sbjct: 127 TPGRYMDHMRRKTIR-PEFLKIVVLDEADEMLSMGFIEDIETILQEVPGERQTLLFSATM 185
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+ ++ + PV + ++ + V + +I E EK L LL + +
Sbjct: 186 PPKLKTIADRFMNKPVSIAVKAKQLT-VENIEQRYIALSEKEKFDTLCNLLDMETPE-LA 243
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
IIF T + +L L + L+ ++ + R + +F +G DV++A+D A
Sbjct: 244 IIFGRTKRRVDELTESLSIRGFAVEGLHGDMKQERRDQVIRKFKRGSIDVMVATDVAA-- 301
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
RG+D VS+VINFD P D + Y+HR GRT R +G +
Sbjct: 302 ---------------------RGLDVNDVSHVINFDLPQDSESYVHRIGRTGRAGKKGIS 340
Query: 390 LSFVSLREQD 399
SFV+ +E+D
Sbjct: 341 YSFVTHKEKD 350
>gi|398793546|ref|ZP_10553839.1| DNA/RNA helicase, superfamily II [Pantoea sp. YR343]
gi|398210331|gb|EJM96980.1| DNA/RNA helicase, superfamily II [Pantoea sp. YR343]
Length = 459
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 116/365 (31%), Positives = 190/365 (52%), Gaps = 33/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L + ++G+ T IQ ++P IL+ +DV +A+TGSGKT AF + ++ +I N +Q
Sbjct: 15 LDNLREMGFDAMTPIQAASLPAILEGRDVRAQAKTGSGKTAAFGVGLLNRIDN----SQF 70
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T+AL+L P++EL +Q+ +++L + +R++K + + +S Q LV P IVV
Sbjct: 71 H-TQALILCPTRELADQVSNVLRQLA-RFTRNIKILTLCGGQPMSAQRDSLVHAPHIVVG 128
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK LDL S L+ +++DEAD + G+ DDM+A++ F P+ Q +L SAT
Sbjct: 129 TPGRLLDHLKRDNLDL-SQLQTLVLDEADRMLEMGFRDDMEAIIGFTPETRQTLLFSATW 187
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+ + SL R+ + + E+ P + I A E+ ++L LL
Sbjct: 188 PDTIASLSQRFQRDALAVATEDKTELPT--IEQQFIEASAKERHSLLGALLS-QQQPASC 244
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
++F NT +C + L + IS L+ +L + R + +F G V+IA+D A
Sbjct: 245 VVFCNTKRECDDVAAALNERDISALALHGDLEQRDRERVLIRFANGSIRVLIATDVAA-- 302
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
RG+D + ++ V+NF D + +IHR GRT R +G A
Sbjct: 303 ---------------------RGLDIKSLALVVNFQLAWDPEVHIHRIGRTGRAGEKGLA 341
Query: 390 LSFVS 394
+SFV+
Sbjct: 342 VSFVA 346
>gi|386750678|ref|YP_006223898.1| ATP-dependent RNA helicase [Helicobacter pylori Shi417]
gi|384556936|gb|AFH97404.1| ATP-dependent RNA helicase [Helicobacter pylori Shi417]
Length = 492
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPK-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|300703503|ref|YP_003745105.1| ATP-dependent RNA helicase, dead-box family [Ralstonia solanacearum
CFBP2957]
gi|299071166|emb|CBJ42480.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
CFBP2957]
Length = 495
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 116/400 (29%), Positives = 203/400 (50%), Gaps = 36/400 (9%)
Query: 10 PTLIQVYFELPFTFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKT 69
P+ V F+ TF L L+A+ + G+ PT IQ AIP+++ +DV+ A+TG+GKT
Sbjct: 10 PSSDSVTFD---TFGLHPDILRALTESGYTRPTPIQAAAIPVVVGGRDVMGAAQTGTGKT 66
Query: 70 GAFAIPMIQKII---NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVD 126
F++P+IQ ++ N + +AL+L+P++EL +Q++ N+ + + ++
Sbjct: 67 AGFSLPIIQNLLPEANTSASPARHPVRALILTPTRELADQVYDNVAKYAKYTA--LRSAV 124
Query: 127 ISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYE 186
+ VD++ Q L +I+VATP R L H++ ++++L S + ++++DEAD + G+
Sbjct: 125 VFGGVDMNPQTEQLRRGVEILVATPGRLLDHVQQRSVNL-SQVRMLVLDEADRMLDMGFL 183
Query: 187 DDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHIL 246
D++ ++ LP Q +L SAT S ++ L LR+P +++ + A +
Sbjct: 184 PDLQRIINLLPAHRQTLLFSATFSPEIKKLAASYLRHPQTIEVAR-SNATADNVRQVIYT 242
Query: 247 AQEDEKATILYTLLKLNLVQG---KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAK 303
+ K L LL+ QG + I+F N+ C +L LE+ KI+ ++ +
Sbjct: 243 VPDGHKQAALVHLLRQRAEQGLPSQCIVFSNSKIGCSRLARALEREKINANAIHGDKTQI 302
Query: 304 ARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVIN 363
R + F QG DV++A+D A RG+D + VIN
Sbjct: 303 ERMQTLEAFKQGTVDVLVATDVAA-----------------------RGLDISQMPCVIN 339
Query: 364 FDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND 403
FD P + + Y+HR GRT R G ALS + ++ L+ D
Sbjct: 340 FDLPFNAEDYVHRIGRTGRAGASGDALSLFAPGDERLLAD 379
>gi|207743814|ref|YP_002260206.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
gi|421897757|ref|ZP_16328124.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2]
gi|206588963|emb|CAQ35925.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2]
gi|206595214|emb|CAQ62141.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
Length = 495
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 116/400 (29%), Positives = 203/400 (50%), Gaps = 36/400 (9%)
Query: 10 PTLIQVYFELPFTFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKT 69
P+ V F+ TF L L+A+ + G+ PT IQ AIP+++ +DV+ A+TG+GKT
Sbjct: 10 PSSDSVTFD---TFGLHPDILRALTESGYTRPTPIQAAAIPVVVGGRDVMGAAQTGTGKT 66
Query: 70 GAFAIPMIQKII---NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVD 126
F++P+IQ ++ N + +AL+L+P++EL +Q++ N+ + + ++
Sbjct: 67 AGFSLPIIQNLLPEANTSASPARHPVRALILTPTRELADQVYDNVAKYAKYTA--LRSAV 124
Query: 127 ISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYE 186
+ VD++ Q L +I+VATP R L H++ ++++L S + ++++DEAD + G+
Sbjct: 125 VFGGVDMNPQTEQLRRGVEILVATPGRLLDHVQQRSVNL-SQVRMLVLDEADRMLDMGFL 183
Query: 187 DDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHIL 246
D++ ++ LP Q +L SAT S ++ L LR+P +++ + A +
Sbjct: 184 PDLQRIINLLPAHRQTLLFSATFSPEIKKLAASYLRHPQTIEVAR-SNATADNVRQVIYT 242
Query: 247 AQEDEKATILYTLLKLNLVQG---KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAK 303
+ K L LL+ QG + I+F N+ C +L LE+ KI+ ++ +
Sbjct: 243 VPDGHKQAALVHLLRQRAEQGLPSQCIVFSNSKIGCSRLARALEREKINANAIHGDKTQI 302
Query: 304 ARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVIN 363
R + F QG DV++A+D A RG+D + VIN
Sbjct: 303 ERMQTLEAFKQGTVDVLVATDVAA-----------------------RGLDISQMPCVIN 339
Query: 364 FDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND 403
FD P + + Y+HR GRT R G ALS + ++ L+ D
Sbjct: 340 FDLPFNAEDYVHRIGRTGRAGASGDALSLFAPGDERLLAD 379
>gi|154284444|ref|XP_001543017.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces capsulatus NAm1]
gi|160358658|sp|A6QRQ7.1|RRP3_AJECN RecName: Full=ATP-dependent rRNA helicase RRP3
gi|150406658|gb|EDN02199.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces capsulatus NAm1]
Length = 485
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 119/366 (32%), Positives = 187/366 (51%), Gaps = 35/366 (9%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ 90
+A LG+ PT IQ +IPL LQ +D++ A TGSGKT AFA+P++Q ++N + Q
Sbjct: 72 EACEALGYKSPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMN-----KPQ 126
Query: 91 ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVAT 150
L+L+P++EL Q+ + + L S V+C I +D+ Q L ++P I+VAT
Sbjct: 127 SLFGLILAPTRELACQISEAFEALGSLIS--VRCAVIVGGMDMVSQAISLGKKPHIIVAT 184
Query: 151 PARALAHLK-AKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
P R L HL+ K L+ SL+ +++DEAD + + + +LK LP+ + L SAT+
Sbjct: 185 PGRLLDHLENTKGFSLR-SLKYLVMDEADRLLDLDFGPILDKILKVLPRERRTYLFSATM 243
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
S V SL+ L NP+ + + V+ L ++ K +Y + LN G++
Sbjct: 244 SSKVESLQRASLSNPLRVSISSNKYQTVATLLQSYLFIPHKYKD--IYLVYLLNEYAGQS 301
Query: 270 -IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL 328
I+F TV++ +L + L + L+ +L +R A+ +F D+++A+D A
Sbjct: 302 AIVFTRTVNETQRLAILLRALGFGSIPLHGQLSQSSRLGALSKFRSRSRDILVATDVAA- 360
Query: 329 ETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGT 388
RG+D V V+NFD P D + YIHR GRTAR G
Sbjct: 361 ----------------------RGLDIPSVDVVLNFDLPSDSKTYIHRVGRTARAGKSGH 398
Query: 389 ALSFVS 394
A S V+
Sbjct: 399 AFSIVT 404
>gi|425788880|ref|YP_007016800.1| ATP-dependent RNA helicase [Helicobacter pylori Aklavik117]
gi|425627195|gb|AFX90663.1| ATP-dependent RNA helicase [Helicobacter pylori Aklavik117]
Length = 492
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPK-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|420418192|ref|ZP_14917284.1| ATP-dependent RNA helicase [Helicobacter pylori NQ4076]
gi|393033018|gb|EJB34081.1| ATP-dependent RNA helicase [Helicobacter pylori NQ4076]
Length = 492
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPK-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|421891297|ref|ZP_16322106.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
K60-1]
gi|378963340|emb|CCF98854.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
K60-1]
Length = 495
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 116/400 (29%), Positives = 203/400 (50%), Gaps = 36/400 (9%)
Query: 10 PTLIQVYFELPFTFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKT 69
P+ V F+ TF L L+A+ + G+ PT IQ AIP+++ +DV+ A+TG+GKT
Sbjct: 10 PSSDSVTFD---TFGLHPDILRALTESGYTRPTPIQAAAIPVVVGGRDVMGAAQTGTGKT 66
Query: 70 GAFAIPMIQKII---NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVD 126
F++P+IQ ++ N + +AL+L+P++EL +Q++ N+ + + ++
Sbjct: 67 AGFSLPIIQNLLPEANTSASPARHPVRALILTPTRELADQVYDNVAKYAKYTA--LRSAV 124
Query: 127 ISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYE 186
+ VD++ Q L +I+VATP R L H++ ++++L S + ++++DEAD + G+
Sbjct: 125 VFGGVDMNPQTEQLRRGVEILVATPGRLLDHVQQRSVNL-SQVRMLVLDEADRMLDMGFL 183
Query: 187 DDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHIL 246
D++ ++ LP Q +L SAT S ++ L LR+P +++ + A +
Sbjct: 184 PDLQRIINLLPAHRQTLLFSATFSPEIKKLAASYLRHPQTIEVAR-SNATADNVRQVIYT 242
Query: 247 AQEDEKATILYTLLKLNLVQG---KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAK 303
+ K L LL+ QG + I+F N+ C +L LE+ KI+ ++ +
Sbjct: 243 VPDGHKQAALVHLLRQRAEQGLPSQCIVFSNSKIGCSRLARALEREKINANAIHGDKTQI 302
Query: 304 ARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVIN 363
R + F QG DV++A+D A RG+D + VIN
Sbjct: 303 ERMQTLEAFKQGTVDVLVATDVAA-----------------------RGLDISQMPCVIN 339
Query: 364 FDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND 403
FD P + + Y+HR GRT R G ALS + ++ L+ D
Sbjct: 340 FDLPFNAEDYVHRIGRTGRAGASGDALSLFAPGDERLLAD 379
>gi|420408247|ref|ZP_14907406.1| ATP-dependent RNA helicase [Helicobacter pylori NQ4216]
gi|393025732|gb|EJB26838.1| ATP-dependent RNA helicase [Helicobacter pylori NQ4216]
Length = 492
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 110/365 (30%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEVQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPE-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R +V F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLVSKNYKSTALHGDMDQRDRRASVMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|420401386|ref|ZP_14900582.1| ATP-dependent RNA helicase [Helicobacter pylori CPY6081]
gi|393020008|gb|EJB21148.1| ATP-dependent RNA helicase [Helicobacter pylori CPY6081]
Length = 492
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPK-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|386745758|ref|YP_006218975.1| ATP-dependent RNA helicase [Helicobacter pylori HUP-B14]
gi|384552007|gb|AFI06955.1| ATP-dependent RNA helicase [Helicobacter pylori HUP-B14]
Length = 492
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPK-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDV---- 316
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 317 -------------------ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|420413206|ref|ZP_14912330.1| ATP-dependent RNA helicase [Helicobacter pylori NQ4099]
gi|393029193|gb|EJB30274.1| ATP-dependent RNA helicase [Helicobacter pylori NQ4099]
Length = 492
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPK-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|385224943|ref|YP_005784868.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori 83]
gi|332673089|gb|AEE69906.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori 83]
Length = 492
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPK-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|384899413|ref|YP_005774793.1| ATP-dependent RNA helicase [Helicobacter pylori F30]
gi|317179357|dbj|BAJ57145.1| ATP-dependent RNA helicase [Helicobacter pylori F30]
Length = 492
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPK-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|398307568|ref|ZP_10511154.1| ATP-dependent RNA helicase; cold shock [Bacillus vallismortis
DV1-F-3]
Length = 494
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 116/403 (28%), Positives = 212/403 (52%), Gaps = 46/403 (11%)
Query: 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIIN 82
F L ++AI ++G+ E T IQ + IPL L NKDV+ +A+TG+GKT AF IP+++KI
Sbjct: 8 FNLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLVEKI-- 65
Query: 83 LKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVE 142
+ +A+V++P++EL Q+ + + ++ + K + I D+ Q L +
Sbjct: 66 ---NPESPNIQAIVIAPTRELAIQVSEELYKIG--NDKRAKVLPIYGGQDIGRQIRALKK 120
Query: 143 RPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQA 202
P I+V TP R L H+ +T+ L +++ V++DEAD + + G+ +D++++L +P +Q
Sbjct: 121 NPHIIVGTPGRLLDHINRRTIRL-NNVNTVVMDEADEMLNMGFIEDIESILSNVPSEHQT 179
Query: 203 ILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLL-- 260
+L SAT+ + + + P +K++ + VS + +++ QE +K L LL
Sbjct: 180 LLFSATMPAPIKRIAERFMTEPEHVKVKAKEMT-VSNIQQFYLEVQERKKFDTLTRLLDI 238
Query: 261 ---KLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLY 317
+L +V G+T V+ + + L+ Y + ++ +L R A+ +F +G
Sbjct: 239 QSPELAIVFGRTKRRVDELAEALNLRGYAAEG------IHGDLTQAKRMVALRKFKEGAI 292
Query: 318 DVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRA 377
+V++A+D A RG+D V++V NFD P D + Y+HR
Sbjct: 293 EVLVATDVAA-----------------------RGLDISGVTHVYNFDVPQDPESYVHRI 329
Query: 378 GRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMND 420
GRT R G A++F++ RE+ ++ A+ + R+ D M +
Sbjct: 330 GRTGRAGKTGMAMTFITPREKSMLR---AIEQTTKRKMDRMKE 369
>gi|188527054|ref|YP_001909741.1| ATP-dependent RNA helicase [Helicobacter pylori Shi470]
gi|384893855|ref|YP_005767904.1| ATP-dependent RNA helicase [Helicobacter pylori Sat464]
gi|188143294|gb|ACD47711.1| ATP-dependent RNA helicase [Helicobacter pylori Shi470]
gi|308063109|gb|ADO04996.1| ATP-dependent RNA helicase [Helicobacter pylori Sat464]
Length = 492
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPK-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|261345155|ref|ZP_05972799.1| ATP-dependent RNA helicase DeaD [Providencia rustigianii DSM 4541]
gi|282566845|gb|EFB72380.1| ATP-dependent RNA helicase DeaD [Providencia rustigianii DSM 4541]
Length = 660
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 134/459 (29%), Positives = 223/459 (48%), Gaps = 46/459 (10%)
Query: 18 ELPFT-FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPM 76
E+ F L L A++ LG+ +P+ IQ++ IPL+L DVL A+TGSGKT AF +P+
Sbjct: 6 EMSFADLGLSASILNALSDLGYEKPSPIQQQCIPLLLNGNDVLGMAQTGSGKTAAFGLPL 65
Query: 77 IQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQ 136
+ I ++ + LVL+P++EL Q+ + + + + +R V V + VQ
Sbjct: 66 LHNI-----DPDLKAPQILVLAPTRELAVQVAEALSDFSKHMNR-VNVVALYGGQRYDVQ 119
Query: 137 EPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFL 196
L + P +VV TP R L HLK TLDL S L+ +++DEAD + G+ DD++ ++ +
Sbjct: 120 LRALRQGPQVVVGTPGRLLDHLKRGTLDL-SKLKGLVLDEADEMLRMGFIDDVENIMSQI 178
Query: 197 PKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATIL 256
P +Q L SAT+ E + + +++P ++++ +I +A + K L
Sbjct: 179 PAQHQTALFSATMPEPIRRITRRFMKDPKEIRIQS-SITTRPDIAQSYWTVSGMRKNEAL 237
Query: 257 YTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGL 316
L+ IIFV T + ++ LE+ ++ LN ++ R + + G
Sbjct: 238 VRFLESEDFDA-AIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKNGR 296
Query: 317 YDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHR 376
D++IA+D A RG+D + +S V+N+D P+D + Y+HR
Sbjct: 297 LDILIATDVAA-----------------------RGLDVERISLVVNYDIPMDAESYVHR 333
Query: 377 AGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFII 436
GRT R G AL FV RE+ L+ + +++ E DL N L++ + F
Sbjct: 334 IGRTGRAGRAGRALLFVENRERRLLRNVERTMKLTIPEVDL---PNAELLSQRRQAQFAA 390
Query: 437 KPYQFNLDEVKGFEYRAKDAWRSNYFEDNPT---DLETL 472
K Q E D +RS + +P+ D+ETL
Sbjct: 391 KVQQQ-------LESSDLDLYRSLLAKVSPSEDVDMETL 422
>gi|398798265|ref|ZP_10557566.1| DNA/RNA helicase, superfamily II [Pantoea sp. GM01]
gi|398100982|gb|EJL91210.1| DNA/RNA helicase, superfamily II [Pantoea sp. GM01]
Length = 501
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 122/392 (31%), Positives = 201/392 (51%), Gaps = 38/392 (9%)
Query: 8 LEPTLIQVYFELPFTF--TLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRA 62
L ++ ++P T TL +P L + ++G+ T IQ ++P IL+ +DV +A
Sbjct: 30 LTAAILPAIRDIPVTAFSTLTQLPASQLDNLREMGFDAMTPIQAASLPAILEGRDVRAQA 89
Query: 63 RTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDV 122
+TGSGKT AF + ++ +I N +Q T+AL+L P++EL +Q+ +++L + +R++
Sbjct: 90 KTGSGKTAAFGVGLLNRIDN----SQFH-TQALILCPTRELADQVSNVLRQLA-RFTRNI 143
Query: 123 KCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFS 182
K + + +S Q LV P IVV TP R L HLK LDL S L+ +++DEAD +
Sbjct: 144 KILTLCGGQPMSAQRDSLVHAPHIVVGTPGRLLDHLKRDNLDL-SQLQTLVLDEADRMLE 202
Query: 183 FGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAH 242
G+ DDM+A++ F P+ Q +L SAT + + SL R+ + + E+ P +
Sbjct: 203 MGFRDDMEAIIGFTPETRQTLLFSATWPDTIASLSQRFQRDALAVATEDKTELPT--IEQ 260
Query: 243 YHILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPA 302
I A E+ ++L LL ++F NT +C + L + IS L+ +L
Sbjct: 261 QFIEASAKERHSLLSALLS-QQQPASCVVFCNTKRECDDVAAALNERDISALALHGDLEQ 319
Query: 303 KARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVI 362
+ R + +F G V+IA+D A RG+D + ++ V+
Sbjct: 320 RDRERVLIRFANGSIRVLIATDVAA-----------------------RGLDIKSLALVV 356
Query: 363 NFDFPLDIQCYIHRAGRTARGKNQGTALSFVS 394
NF D + +IHR GRT R +G A+SFV+
Sbjct: 357 NFQLAWDPEVHIHRIGRTGRAGEKGLAVSFVA 388
>gi|386753803|ref|YP_006227021.1| ATP-dependent RNA helicase [Helicobacter pylori Shi112]
gi|384560061|gb|AFI00528.1| ATP-dependent RNA helicase [Helicobacter pylori Shi112]
Length = 492
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADRILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMHLLDTQAPK-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|90408477|ref|ZP_01216636.1| ATP-dependent RNA helicase [Psychromonas sp. CNPT3]
gi|90310409|gb|EAS38535.1| ATP-dependent RNA helicase [Psychromonas sp. CNPT3]
Length = 426
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 117/390 (30%), Positives = 200/390 (51%), Gaps = 40/390 (10%)
Query: 21 FTFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMI 77
+F +P L+A+ + G+ +P+ IQE+AIP+IL KDV+ A+TG+GKT F +P++
Sbjct: 1 MSFDSLGLPEELLRAVKEQGYTKPSPIQEQAIPVILSGKDVMAAAQTGTGKTAGFTLPLL 60
Query: 78 QKIINLKQTAQVQETKALVLSPSKELCNQLHKNI----QELTMKCSRDVKCVDISEQVDV 133
++ + A+ + + L+L+P++EL Q+H+++ Q L ++ + V I+ Q+
Sbjct: 61 ANLMK-GERAKANQVRVLILTPTRELAAQIHESVCNYGQNLPLRSAVVFGGVKINPQMQ- 118
Query: 134 SVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVL 193
LL D++VATP R L + + K LE++++DEAD + G+ D+K ++
Sbjct: 119 -----LLRRGVDVLVATPGRLLDLYQQNAVRFK-QLEVLVLDEADRMLDMGFIHDIKRII 172
Query: 194 KFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKA 253
KFLP+ Q +L SAT S D+ L ++ +PV + + P + + + +K+
Sbjct: 173 KFLPEKRQNLLFSATFSNDIRKLAKGLVNDPVEISV-SPRNTTAESVTQFIYEVDKTKKS 231
Query: 254 TILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFN 313
+L TL+K N + + ++F T +L LE I + ++ AR A+ F
Sbjct: 232 PLLSTLIKENKWK-QVLVFSKTKHGANRLVKQLEGRGILSAAIHGNKSQAARTRALASFK 290
Query: 314 QGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCY 373
+G V++A+D A RGID + V+NFD P + Y
Sbjct: 291 EGKITVLVATDIAA-----------------------RGIDIDQLEQVVNFDLPHVSEDY 327
Query: 374 IHRAGRTARGKNQGTALSFVSLREQDLMND 403
+HR GRT R N+G A+S V E L+ D
Sbjct: 328 VHRIGRTGRAGNKGEAISLVCEDEFKLLKD 357
>gi|385229561|ref|YP_005789477.1| ATP-dependent RNA helicase [Helicobacter pylori Puno135]
gi|344335999|gb|AEN17960.1| ATP-dependent RNA helicase [Helicobacter pylori Puno135]
Length = 492
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHARTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPK-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|385248761|ref|YP_005776980.1| ATP-dependent RNA helicase [Helicobacter pylori F57]
gi|317181556|dbj|BAJ59340.1| ATP-dependent RNA helicase [Helicobacter pylori F57]
Length = 492
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPK-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDV---- 316
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 317 -------------------ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|420502234|ref|ZP_15000775.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-41]
gi|393153514|gb|EJC53807.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-41]
Length = 492
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 110/365 (30%), Positives = 191/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + P+ + +A + E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHI-APSNITNTDIAQRFYVINEHERAEAIMRLLDTQAPK-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMVFKKNDADVLVATDV---- 316
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 317 -------------------ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|431792618|ref|YP_007219523.1| DNA/RNA helicase [Desulfitobacterium dichloroeliminans LMG P-21439]
gi|430782844|gb|AGA68127.1| DNA/RNA helicase, superfamily II [Desulfitobacterium
dichloroeliminans LMG P-21439]
Length = 500
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 109/368 (29%), Positives = 199/368 (54%), Gaps = 33/368 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++++ +G+ E T IQE+ IPL L+ KDV+ +A+TG+GKT AF IP+IQKI + Q
Sbjct: 14 IKSVLNMGFEEATPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGIPLIQKIAETSEDIQ- 72
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+VL+P++EL Q+ + + ++ + ++ + I ++ Q L +RP I+VA
Sbjct: 73 ----GIVLTPTRELAVQVAEELNKIGQ--FKGIRTLPIYGGQEIDRQIRALKKRPHIIVA 126
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + H++ +T+ L+ ++ +VI+DEAD + + G+ +D++ +L+ +P+ Q +L SAT+
Sbjct: 127 TPGRLMDHMRRRTIRLQ-NINMVILDEADEMLNMGFVEDIETILQEIPEARQTLLFSATM 185
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+ +L +++P ++ ++ + V+ + ++ E K +L LL +
Sbjct: 186 PRQIQNLAQKFMKDPELISIKGKEVT-VANIEQDYLEVPEKMKFDVLCRLLDIQSPD-LA 243
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L L + S ++ +L R + QF +G +V++A+D A
Sbjct: 244 IVFGRTKSRVDELSEALNKRGYSAEGIHGDLSQSKRDSVMRQFKEGSIEVLVATDVAA-- 301
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
RG+D V++V NFD P D + Y+HR GRT R G A
Sbjct: 302 ---------------------RGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGLA 340
Query: 390 LSFVSLRE 397
++FV+ RE
Sbjct: 341 VTFVTPRE 348
>gi|385215525|ref|YP_005775481.1| ATP-dependent RNA helicase [Helicobacter pylori F32]
gi|317180053|dbj|BAJ57839.1| ATP-dependent RNA helicase [Helicobacter pylori F32]
Length = 492
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPK-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|227824325|ref|ZP_03989157.1| DEAD-box ATP-dependent RNA helicase ydbR [Acidaminococcus sp. D21]
gi|226904824|gb|EEH90742.1| DEAD-box ATP-dependent RNA helicase ydbR [Acidaminococcus sp. D21]
Length = 444
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 117/406 (28%), Positives = 203/406 (50%), Gaps = 38/406 (9%)
Query: 19 LPFTFTLFCIPLQAIAKL---GWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIP 75
+P +F F I + +L G PT +QERAIP +LQ +DV+ RA+TG GKT +F +P
Sbjct: 31 MPSSFAQFAIAPSLVERLHQTGKDIPTPVQERAIPALLQGRDVICRAQTGVGKTLSFVVP 90
Query: 76 MIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSV 135
+ KI +K Q AL+LSP++EL Q I++L V+ + +S D
Sbjct: 91 LFTKITEVKTFVQ-----ALILSPTRELAQQTAGEIKKLADGTP--VRVLAVSGGKDYDE 143
Query: 136 QEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKF 195
+ L + +++V TP R L HL+ L + +++DE D + G+ +D++ +L
Sbjct: 144 ERRKLGNKANVLVGTPGRLLDHLRKGNTSL-GGITYLVLDEVDEMLRQGFGEDIETLLSL 202
Query: 196 LPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATI 255
+P+ +Q ++ SATL E+V L +I +NP ++ + +P A S + I ED K
Sbjct: 203 MPQPHQTMMCSATLDEEVRKLGKMITKNPRLIDI-DPKEATASTIHQVCIKVSEDHKEEA 261
Query: 256 LYTLL-KLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQ 314
L T++ + N ++F + ++ ++ +L + VL+ ++ + R A+ +F +
Sbjct: 262 LQTIIDRCNPFL--MLVFCKSKERAIEVYDWLYGKGFNADVLHGDMSQQKRRQAMERFRK 319
Query: 315 GLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYI 374
+++ASD A RG+D + V+ V+NFD P D Y+
Sbjct: 320 AKTQILVASDIAA-----------------------RGLDVEGVTQVVNFDIPHDPDWYV 356
Query: 375 HRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMND 420
HR GRT R N+G A++F + E + ++L Q+L +
Sbjct: 357 HRIGRTGRAGNEGEAITFYTADETRWLTHLEDKLGITLERQNLAGE 402
>gi|119899811|ref|YP_935024.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72]
gi|119672224|emb|CAL96138.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72]
Length = 537
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 117/386 (30%), Positives = 193/386 (50%), Gaps = 30/386 (7%)
Query: 18 ELPFTFTLFCIPL-QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPM 76
EL F PL +AI+ G+ PT IQ +AIPL+L D+L A+TG+GKT F +P+
Sbjct: 4 ELTFASLGLAEPLLRAISDTGYTTPTPIQAKAIPLVLAGGDLLAAAQTGTGKTAGFTLPV 63
Query: 77 IQKIINLK-QTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSV 135
+ K+ + + L+L+P++EL Q+ +++Q + + + + V+++
Sbjct: 64 LHKLAATHVHPHPAGKPRCLILTPTRELAAQVEESVQTYGKHLA--LTSMVMFGGVNINP 121
Query: 136 QEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKF 195
Q L +R DI+VATP R L H+ KTLDL S +EI+++DEAD + G+ D++ VL
Sbjct: 122 QISALKKRVDILVATPGRLLDHVGQKTLDL-SGVEILVLDEADRMLDMGFIRDIRKVLAL 180
Query: 196 LPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATI 255
LPK Q +L SAT S+++ L + +L NP +++ A +++ Q+ ++ +
Sbjct: 181 LPKQRQNLLFSATFSDEIRDLANGLLHNPGCVEVAPRNTASERVEQTVYMIGQKQKRELL 240
Query: 256 LYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQG 315
+ + + Q ++F T KL YL + I ++ AR A+ QF G
Sbjct: 241 AWLIKEKQWFQ--ALVFTRTKHGANKLAEYLTKHDIPAAAIHGNKSQSARTRALSQFKDG 298
Query: 316 LYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIH 375
V++A+D A RG+D + V+NF+ P + Y+H
Sbjct: 299 SLPVLVATDIAA-----------------------RGLDIDQLPQVVNFELPNVPEDYVH 335
Query: 376 RAGRTARGKNQGTALSFVSLREQDLM 401
R GRT R G A+S V E L+
Sbjct: 336 RIGRTGRAGADGNAISLVDGEEVKLL 361
>gi|387781935|ref|YP_005792648.1| ATP-dependent RNA helicase [Helicobacter pylori 51]
gi|261837694|gb|ACX97460.1| ATP-dependent RNA helicase [Helicobacter pylori 51]
Length = 492
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPK-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|157960747|ref|YP_001500781.1| DEAD/DEAH box helicase [Shewanella pealeana ATCC 700345]
gi|157845747|gb|ABV86246.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
700345]
Length = 432
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 115/382 (30%), Positives = 199/382 (52%), Gaps = 28/382 (7%)
Query: 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII 81
+F+ L+AI++ G+ + T IQ++AIP + + +DVL A+TG+GKT AFA+P++QK++
Sbjct: 5 SFSFAPEILRAISECGYEKMTPIQQQAIPAVRRGQDVLASAQTGTGKTAAFALPILQKML 64
Query: 82 NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLV 141
+ T +AL+L+P++EL Q+ NI + D+K V + V + Q L
Sbjct: 65 DNPSTTGRSNARALILTPTRELAAQIADNINDYAKYL--DLKVVTVYGGVKMDSQATKLK 122
Query: 142 ERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQ 201
DI++ATP R L H+ A L L S+++ +++DEAD + G+ D++ +L+ + K Q
Sbjct: 123 RGADIIIATPGRLLEHIIACNLSL-SNVDFLVLDEADRMLDMGFSADIQKILQAVNKKRQ 181
Query: 202 AILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLK 261
+L SAT S V L + ++ P ++ ++ ++ + + Q ++ + + K
Sbjct: 182 NLLFSATFSTAVKQLANEMMVKPNVIAADKQNTTAITVSQVVYPVEQRRKRELLSELIGK 241
Query: 262 LNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVII 321
N Q ++F T D KL+ L I T V++ E +R A+ +F +G V++
Sbjct: 242 KNWQQ--VLVFTATRDAADKLEKELNLDGIPTAVVHGEKAQGSRRRALREFKEGKMRVLV 299
Query: 322 ASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTA 381
A++ A RG+D Q + V+N+D P + Y+HR GRT
Sbjct: 300 ATEVAA-----------------------RGLDIQGLEYVVNYDLPFLAEDYVHRIGRTG 336
Query: 382 RGKNQGTALSFVSLREQDLMND 403
R G A+SFVS E+ + D
Sbjct: 337 RAGKSGVAISFVSREEERTLAD 358
>gi|420497178|ref|ZP_14995739.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-25]
gi|393114875|gb|EJC15390.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-25]
Length = 501
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEVQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPE-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|333891675|ref|YP_004465550.1| ATP-dependent RNA helicase RhlE [Alteromonas sp. SN2]
gi|332991693|gb|AEF01748.1| ATP-dependent RNA helicase RhlE [Alteromonas sp. SN2]
Length = 457
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 115/374 (30%), Positives = 191/374 (51%), Gaps = 29/374 (7%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQAI K G+ P+ IQ++AIP+IL+ KD+L A+TG+GKT F++P++ ++++ + A
Sbjct: 13 LQAIEKQGYTTPSPIQQQAIPIILEGKDILAAAQTGTGKTAGFSLPLLHRLLDGRPAAS- 71
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+AL+L+P++EL Q+ +N++ + +K + V ++ Q L D+++A
Sbjct: 72 NCVRALILTPTRELAAQVEENVKSFSEFLP--LKTAVVFGGVGINPQMKALRSGVDVLIA 129
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L + + S LE +++DEAD + G+ D+K +LK LP Q +L SAT
Sbjct: 130 TPGRLLDLYQQNAVKF-SQLETLVLDEADRMLDMGFIHDIKRILKLLPTKRQTLLFSATF 188
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
S ++ +L I NP + PA V + + + + +K L +L+K N + +
Sbjct: 189 SSEITTLAQTITNNPEKVS-TAPANTTVETVQQHLVPIDKSKKTAALISLIKQNGWK-QV 246
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
++F T ++ L + +I + ++ AR A+ +F G DV++A+D A
Sbjct: 247 LVFSRTKHGANRIADKLSRARIPSAAIHGNKSQGARTKALSEFKSGEIDVLVATDIAA-- 304
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
RGID + VIN D P Y+HR GRT R G A
Sbjct: 305 ---------------------RGIDINELPIVINIDLPNTPADYVHRIGRTGRAGASGQA 343
Query: 390 LSFVSLREQDLMND 403
SFVS+ E D + D
Sbjct: 344 WSFVSIDELDQLKD 357
>gi|323490564|ref|ZP_08095770.1| ATP-dependent RNA helicase exp9 [Planococcus donghaensis MPA1U2]
gi|323395830|gb|EGA88670.1| ATP-dependent RNA helicase exp9 [Planococcus donghaensis MPA1U2]
Length = 506
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 111/378 (29%), Positives = 199/378 (52%), Gaps = 43/378 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ ++G+ E T IQE I L ++ KD++ +A+TG+GKT AF IP+I+KI Q
Sbjct: 14 LKSVKRMGFEEATPIQEGTIRLGMEGKDIIGQAQTGTGKTTAFGIPLIEKIDTKDGNVQ- 72
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
L+++P++EL Q+ + + L ++V+ + + ++S Q L RP I+V
Sbjct: 73 ----GLIIAPTRELAIQVSEELYRLGQ--DKNVRILSVYGGQEISRQIRALKNRPQIIVG 126
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H+ +TL L ++ +I+DEAD + + G+ +D++ ++ +P Q +L SAT+
Sbjct: 127 TPGRLLDHINRRTLKL-DNVNTLILDEADEMLNMGFIEDIQTIMASVPDTRQTLLFSATM 185
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLL-----KLNL 264
+ + + ++ P I+K++ + V + +++ + E EK L LL +L +
Sbjct: 186 PDAIRRIAEKFMKTPEIVKIKSKEMT-VENIEQFYVKSVEREKFDFLSRLLNVQQPELAI 244
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
V G+T V+ + K ++ YL + ++ +L R + QF G D+++A+D
Sbjct: 245 VFGRTKRRVDELAKALNIRGYLAEG------IHGDLSQAKRMSVLKQFKAGKIDILVATD 298
Query: 325 EKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384
A RG+D VS+V NFD P D + Y+HR GRT R
Sbjct: 299 VAA-----------------------RGLDISGVSHVYNFDIPQDPESYVHRIGRTGRAG 335
Query: 385 NQGTALSFVSLREQDLMN 402
+G A++FV+ RE ++
Sbjct: 336 KKGVAVTFVTPREMGYLS 353
>gi|394994548|ref|ZP_10387262.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus sp. 916]
gi|393804648|gb|EJD66053.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus sp. 916]
Length = 494
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 116/403 (28%), Positives = 212/403 (52%), Gaps = 46/403 (11%)
Query: 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIIN 82
F L ++AI ++G+ E T IQ + IPL L NKDV+ +A+TG+GKT AF IP+++K+
Sbjct: 8 FQLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLVEKM-- 65
Query: 83 LKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVE 142
+ +A+V++P++EL Q+ + + ++ + K + I D+ Q L +
Sbjct: 66 ---NPESPNIQAIVIAPTRELAIQVSEELYKIGQ--DKRAKVLPIYGGQDIGRQIRALKK 120
Query: 143 RPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQA 202
P I+V TP R L H+ +T+ L +++ V++DEAD + + G+ DD++++L +P +Q
Sbjct: 121 NPHIIVGTPGRLLDHINRRTIRL-NNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQT 179
Query: 203 ILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLL-- 260
+L SAT+ + + + P +K++ + VS + +++ QE +K L LL
Sbjct: 180 LLFSATMPAPIKRIAERFMTEPEHVKVKAKEMT-VSNIQQFYLEVQERKKFDTLTRLLDI 238
Query: 261 ---KLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLY 317
+L +V G+T V+ + + L+ Y + ++ +L R A+ +F +G
Sbjct: 239 QSPELAIVFGRTKRRVDELAEALNLRGYAAEG------IHGDLTQAKRMVALRKFKEGAI 292
Query: 318 DVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRA 377
+V++A+D A RG+D V++V NFD P D + Y+HR
Sbjct: 293 EVLVATDVAA-----------------------RGLDISGVTHVYNFDVPQDPESYVHRI 329
Query: 378 GRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMND 420
GRT R G A++F++ RE+ ++ A+ + R+ D M +
Sbjct: 330 GRTGRAGKTGMAMTFITPREKSMLR---AIEQTTKRKMDRMKE 369
>gi|366087286|ref|ZP_09453771.1| ATP-dependent RNA helicase [Lactobacillus zeae KCTC 3804]
Length = 502
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 115/375 (30%), Positives = 196/375 (52%), Gaps = 47/375 (12%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AIA+ G+ E T IQ IPL+L+ KDV+ +A+TG+GKT AF +P++Q I ++ Q
Sbjct: 13 LKAIAQSGFEEATPIQAETIPLVLEGKDVIGQAQTGTGKTAAFGLPILQHIDKADRSIQ- 71
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRD--VKCVDISEQVDVSVQEPLLVERPDIV 147
ALV+SP++EL Q QE + RD +K + D+ Q L + P IV
Sbjct: 72 ----ALVISPTRELAIQ----TQEELYRLGRDKKIKVQAVYGGADIRRQIRQLADHPQIV 123
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
V TP R L H+ TL L+ L+ +++DEAD + G+ DD++ +++ +P Q +L SA
Sbjct: 124 VGTPGRILDHIGRHTLKLE-HLDTLVLDEADEMLDMGFIDDIEKIVEQMPTERQTLLFSA 182
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLL-----KL 262
T+ ++ L + +++PV++K++ + + Y++ A++ EK ++ L L
Sbjct: 183 TMPAAIMRLTNKFMKSPVVVKIKAKELT-ADTVEQYYVRAKDYEKFDVMTRLFDVQDPDL 241
Query: 263 NLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIA 322
L+ G+T V+ + + K + Y + + +L + R + QF G D ++A
Sbjct: 242 ALIFGRTKRRVDELTRGLKARGYRAEG------IYGDLTQQKRMSVLRQFKSGQLDFLVA 295
Query: 323 SDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTAR 382
+D A RG+D V++V N+D P D Y+HR GRT R
Sbjct: 296 TDVAA-----------------------RGLDISGVTHVYNYDIPQDPDSYVHRIGRTGR 332
Query: 383 GKNQGTALSFVSLRE 397
++G +++FV+ E
Sbjct: 333 AGHKGVSVTFVTPNE 347
>gi|308184052|ref|YP_003928185.1| ATP-dependent RNA helicase [Helicobacter pylori SJM180]
gi|308059972|gb|ADO01868.1| ATP-dependent RNA helicase [Helicobacter pylori SJM180]
Length = 492
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPK-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDV---- 316
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 317 -------------------ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|82703770|ref|YP_413336.1| DEAD/DEAH box helicase-like protein [Nitrosospira multiformis ATCC
25196]
gi|82411835|gb|ABB75944.1| DEAD/DEAH box helicase-like protein [Nitrosospira multiformis ATCC
25196]
Length = 510
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 116/378 (30%), Positives = 203/378 (53%), Gaps = 35/378 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPM---IQKIINLKQT 86
L+AIA G+ +PT IQ +AIP IL+ +D++ A+TG+GKT +F +PM +Q N +
Sbjct: 13 LRAIADQGYTDPTPIQTQAIPHILEGRDIMGAAQTGTGKTASFTLPMLNLLQSGANTSAS 72
Query: 87 AQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDI 146
+ L+L P++EL Q+H++++ T ++ + VD+ Q L +I
Sbjct: 73 PARHPIRTLILVPTRELAIQVHESVK--TYGKYLPLRYAAVYGGVDMEPQTRELRAGVEI 130
Query: 147 VVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
+VATP R L H++ K ++L S +EI+I+DEAD + G+ D+K +L LP Q+++ S
Sbjct: 131 LVATPGRLLDHVQQKAINL-SKVEILILDEADRMLDMGFLPDIKRILALLPSQRQSLMFS 189
Query: 207 ATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHY--HILAQEDEKATILYTLLKLNL 264
AT S+++ L +LR PV++++ +++L + H + +E K +L L+K
Sbjct: 190 ATFSDEIKKLAGKLLREPVLVEVARRNT--ITELITHVVHPVVRE-RKRELLAHLIKSQD 246
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
+Q + ++F T +L LE+ IS ++ + R A+ +F QG+ V++A+D
Sbjct: 247 LQ-QVLVFARTKHGASRLAHQLERDHISATAIHGDKTQTQRTEALAKFKQGVVRVLVATD 305
Query: 325 EKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384
A RG+D + + +V+NF+ P + + Y+HR GRT R
Sbjct: 306 VAA-----------------------RGLDIEELPHVVNFELPTNPEDYVHRIGRTGRAG 342
Query: 385 NQGTALSFVSLREQDLMN 402
+G A+S V E +L+
Sbjct: 343 TKGDAVSLVCEDEAELLK 360
>gi|420394987|ref|ZP_14894218.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori CPY1124]
gi|393015751|gb|EJB16916.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori CPY1124]
Length = 492
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPK-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|385228012|ref|YP_005787945.1| ATP-dependent RNA helicase [Helicobacter pylori Puno120]
gi|344334450|gb|AEN14894.1| ATP-dependent RNA helicase [Helicobacter pylori Puno120]
Length = 492
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPK-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRTSIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|420414758|ref|ZP_14913875.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori NQ4053]
gi|393034502|gb|EJB35559.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori NQ4053]
Length = 492
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPK-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|389806354|ref|ZP_10203485.1| ATP-dependent RNA helicase [Rhodanobacter thiooxydans LCS2]
gi|388445574|gb|EIM01638.1| ATP-dependent RNA helicase [Rhodanobacter thiooxydans LCS2]
Length = 442
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 116/367 (31%), Positives = 184/367 (50%), Gaps = 29/367 (7%)
Query: 37 GWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALV 96
G+ +PT IQ AIP L+ D+L A+TG+GKT AFA+P++QK+ QT + +AL+
Sbjct: 20 GYTQPTPIQAAAIPPALEGHDLLAAAQTGTGKTAAFALPLLQKLSTSGQT-MTRRPRALI 78
Query: 97 LSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALA 156
L+P++EL Q+H+N+++ V I V + Q L D+V+ATP R +
Sbjct: 79 LTPTRELAAQIHENMRDYGKHI--HVSATTIFGGVGMGPQINALRRGVDVVIATPGRLID 136
Query: 157 HLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSL 216
HL+ +TLDL S++E +++DEAD + G+ +K +L+ +PK Q +L SAT + + +L
Sbjct: 137 HLQQRTLDL-SAVETLVLDEADRMLDMGFLPALKRILQSVPKKRQTLLFSATFAPAIKAL 195
Query: 217 KHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTIIFVNTV 276
+ NP + + P H + ++ +L+ L + + Q T++F T
Sbjct: 196 ALDFMHNPREISVSAPNTVTTLVSHQVHPVDASRKRDLLLHVLSQDSRRQ--TLVFSRTK 253
Query: 277 DKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINST 336
KL +L + ++ AR A+ F G V++A+D A
Sbjct: 254 HGADKLVTFLNASGLRAAAIHGNKSQNARTRALADFKSGRVTVLVATDIAA--------- 304
Query: 337 NNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLR 396
RGID + + VINFD P + Y+HR GRT R +G ALS VS
Sbjct: 305 --------------RGIDIEQLPIVINFDLPSVAEDYVHRIGRTGRAGMEGLALSLVSHD 350
Query: 397 EQDLMND 403
E L+ D
Sbjct: 351 ESGLLFD 357
>gi|386755314|ref|YP_006228531.1| ATP-dependent RNA helicase [Helicobacter pylori PeCan18]
gi|384561572|gb|AFI02038.1| ATP-dependent RNA helicase [Helicobacter pylori PeCan18]
Length = 492
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPK-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRFSIMAFKKNDADVLVATDV---- 316
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 317 -------------------ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|417974638|ref|ZP_12615445.1| ATP-dependent RNA helicase [Lactobacillus ruminis ATCC 25644]
gi|346328982|gb|EGX97294.1| ATP-dependent RNA helicase [Lactobacillus ruminis ATCC 25644]
Length = 497
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 112/372 (30%), Positives = 201/372 (54%), Gaps = 33/372 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AI + G+ E T IQE IPL+L DV+ +A+TG+GKT AF +P++Q +++K+
Sbjct: 13 LKAIKRSGFEEATPIQEATIPLVLAGIDVIGQAQTGTGKTAAFGLPILQH-VDVKE---- 67
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ +A+V+SP++EL Q + + L V+ V D+ Q LL P I+V
Sbjct: 68 EHIQAIVVSPTRELAIQTQEELYRLGKDKRAKVQVV--YGGADIRRQIKLLKHVPQILVG 125
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H+ KT+DL S ++ +++DEAD + G+ +D++A++K +P+ Q +L SAT+
Sbjct: 126 TPGRLLDHINRKTVDL-SHVKTLVLDEADEMLDMGFLEDIEAIIKNVPEERQTLLFSATM 184
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+ + S+ + P ++K++ + + Y + A+E EK I+ +L + + T
Sbjct: 185 PKAIRSIGEKFMHEPQVVKIKAKELT-TDLVDQYFVKAREYEKFDIMTRILDVQAPE-LT 242
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L LE + ++ +L + R + + +F +G D+++A+D A
Sbjct: 243 IVFGRTKRRVDELSKGLEARGYNAAGIHGDLTQQRRMNILKKFKEGRLDILVATDVAA-- 300
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
RG+D V++V N+D P D + Y+HR GRT R + G +
Sbjct: 301 ---------------------RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGHHGIS 339
Query: 390 LSFVSLREQDLM 401
++FV+ E + +
Sbjct: 340 VTFVTPNEMEYL 351
>gi|85058891|ref|YP_454593.1| ATP-dependent RNA helicase RhlE [Sodalis glossinidius str.
'morsitans']
gi|84779411|dbj|BAE74188.1| putative ATP-dependent RNA helicase [Sodalis glossinidius str.
'morsitans']
Length = 453
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 112/376 (29%), Positives = 199/376 (52%), Gaps = 30/376 (7%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTA-- 87
L+A+A+ G+LEPT +Q++AIP +LQ +D++ A+TG+GKT AF +P++Q + A
Sbjct: 13 LRALAEKGYLEPTPVQQQAIPYVLQGRDIMASAQTGTGKTAAFTLPILQLLDQRPAPAGK 72
Query: 88 QVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
Q + +AL+L+P++EL Q+ +NI E + ++ + + V ++ Q L +++
Sbjct: 73 QRRPIRALILTPTRELAAQIGENITEYSAHLG--LRSLVVFGGVSINPQMMKLRGGVEVL 130
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
VATP R L + + +DL S +EI+++DEAD + G+ D++ V+K LP Q+++ SA
Sbjct: 131 VATPGRLLDLAQQRAVDL-SQVEILVLDEADRMLDMGFIHDIRRVMKLLPTKRQSLMFSA 189
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
T S+++ +L + +L NP +++ A Q+ + + + K +L ++ N Q
Sbjct: 190 TFSDEIKTLANSLLDNPASVEVARRNTAS-EQITQFVHMVDKKRKRELLSDMIGRNNWQ- 247
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
+ ++F T L L + I+ ++ AR A+ F QG V++A+D A
Sbjct: 248 QVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKQGSIRVLVATDIAA 307
Query: 328 LETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQG 387
RG+D + +V+N++ P + Y+HR GRT R G
Sbjct: 308 -----------------------RGLDIDLLPHVVNYELPQVAEDYVHRIGRTGRAAATG 344
Query: 388 TALSFVSLREQDLMND 403
ALS V + E L+ D
Sbjct: 345 EALSLVCVDELGLLRD 360
>gi|410085290|ref|ZP_11282009.1| ATP-dependent RNA helicase RhlE [Morganella morganii SC01]
gi|421492276|ref|ZP_15939637.1| RHLE [Morganella morganii subsp. morganii KT]
gi|455738594|ref|YP_007504860.1| ATP-dependent RNA helicase RhlE [Morganella morganii subsp.
morganii KT]
gi|400193432|gb|EJO26567.1| RHLE [Morganella morganii subsp. morganii KT]
gi|409767999|gb|EKN52063.1| ATP-dependent RNA helicase RhlE [Morganella morganii SC01]
gi|455420157|gb|AGG30487.1| ATP-dependent RNA helicase RhlE [Morganella morganii subsp.
morganii KT]
Length = 448
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 118/388 (30%), Positives = 199/388 (51%), Gaps = 33/388 (8%)
Query: 19 LPFTFTLFCIPLQ-AIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMI 77
+ F+ C +Q A+A++G+ +PT IQ +AIP +L D+L A+TG+GKT F +P++
Sbjct: 1 MSFSSLPLCPEIQKAVAEMGYEQPTPIQMQAIPQVLAGHDLLASAQTGTGKTAGFTLPIL 60
Query: 78 QKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQE 137
Q + + + + +AL+LSP++EL Q+ +N++E SR ++ + VS+
Sbjct: 61 QYLQDNPRKGGGRPVRALILSPTRELAAQIGENVREY----SRHLRTRSLVVFGGVSINP 116
Query: 138 PLLVERP--DIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKF 195
++ R DI++ATP R L +DL S +EI+++DEAD + G+ D++ V+K
Sbjct: 117 QMMKLRGGVDILIATPGRLLDLEHQNAVDL-SKVEILVLDEADRMLDMGFIHDIRRVIKK 175
Query: 196 LPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATI 255
LP Q +L SAT S + SL + IL NPV +++ P + Q+ + L + KA +
Sbjct: 176 LPVKRQNLLFSATFSNGIKSLANTILNNPVTVEV-SPRNSASQQVTQFVHLVDKKRKAEL 234
Query: 256 LYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQG 315
L L+ + + + +IF T +L +L I ++ AR A+ F G
Sbjct: 235 LAHLIGRDNWE-QVLIFTRTKHGANRLAEFLNDSGIKAAAIHGNKSQGARTRALADFKSG 293
Query: 316 LYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIH 375
++A+D A RG+D + + V+N++ P + Y+H
Sbjct: 294 AIRALVATDIAA-----------------------RGLDIEQLPYVVNYELPNVAEDYVH 330
Query: 376 RAGRTARGKNQGTALSFVSLREQDLMND 403
R GRT R + G ALS V + E DL+ D
Sbjct: 331 RIGRTGRAEATGLALSLVCVDEHDLLRD 358
>gi|420444889|ref|ZP_14943803.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-42]
gi|393063083|gb|EJB63930.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-42]
Length = 491
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNADITQRFYVI-NEHERAEAIMRLLDTQAPE-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLVSKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|294142025|ref|YP_003558003.1| DEAD/DEAH box helicase [Shewanella violacea DSS12]
gi|293328494|dbj|BAJ03225.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea
DSS12]
Length = 427
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 121/383 (31%), Positives = 199/383 (51%), Gaps = 38/383 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKI---INLKQT 86
LQ + +LG+ +PT IQ +AIP IL +D++ A+TGSGKT AFA+P++ K+ I L++T
Sbjct: 23 LQVLTELGYTQPTPIQTQAIPAILAGQDIMAGAQTGSGKTAAFALPILNKLTAQICLQKT 82
Query: 87 AQVQET------KALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLL 140
+ Q++ +ALVL+P++EL Q+H + + VK + V + Q +L
Sbjct: 83 -EAQDSADKPAIRALVLTPTRELALQVHGSFVKYAKLTQ--VKSALVYGGVSIDAQAQIL 139
Query: 141 VERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLY 200
DI+VATP R L HL+ +L+L + LE ++ DEAD + G++D++ A++K LPK
Sbjct: 140 AAGVDILVATPGRLLDHLRRGSLNL-NQLEFLVFDEADRMLDMGFKDEIDAIVKQLPKTR 198
Query: 201 QAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLL 260
Q +L SAT E + L +LR+P +++ E A V + + + + A + + +
Sbjct: 199 QTLLFSATFDESIYGLSQSLLRDPKQIEVGERNAAAVEIDQRVYAVDSDRKLALVTHLIE 258
Query: 261 KLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVI 320
NL Q +IF KL L + IS + +L AR + F G V+
Sbjct: 259 SGNLQQ--VLIFSRKKLAADKLAANLTKAGISAQAFHGDLSQGAREKVLQGFKDGEVRVL 316
Query: 321 IASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRT 380
+A+D A RGID ++ VIN++ P + Y+HR GRT
Sbjct: 317 VATDVAA-----------------------RGIDIIDLNYVINYELPYKAEDYVHRIGRT 353
Query: 381 ARGKNQGTALSFVSLREQDLMND 403
R N+G A++ + ++ L+ +
Sbjct: 354 GRAGNKGLAITLLCSEDEHLLEE 376
>gi|421713416|ref|ZP_16152747.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R32b]
gi|407216782|gb|EKE86619.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R32b]
Length = 492
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPK-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|217033461|ref|ZP_03438891.1| hypothetical protein HP9810_1g75 [Helicobacter pylori 98-10]
gi|216944166|gb|EEC23594.1| hypothetical protein HP9810_1g75 [Helicobacter pylori 98-10]
Length = 492
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 191/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPK-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F+ T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFMRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDV---- 316
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 317 -------------------ASRGLDIGGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|420403406|ref|ZP_14902592.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori CPY6261]
gi|393020572|gb|EJB21711.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori CPY6261]
Length = 492
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPK-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|420405153|ref|ZP_14904333.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori CPY6271]
gi|393025023|gb|EJB26133.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori CPY6271]
Length = 492
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPK-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|108562675|ref|YP_626991.1| ATP-dependent RNA helicase [Helicobacter pylori HPAG1]
gi|217031464|ref|ZP_03436969.1| hypothetical protein HPB128_21g22 [Helicobacter pylori B128]
gi|298736807|ref|YP_003729337.1| putative helicase [Helicobacter pylori B8]
gi|107836448|gb|ABF84317.1| ATP-dependent RNA helicase [Helicobacter pylori HPAG1]
gi|216946664|gb|EEC25260.1| hypothetical protein HPB128_21g22 [Helicobacter pylori B128]
gi|298356001|emb|CBI66873.1| putative helicase [Helicobacter pylori B8]
Length = 492
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPK-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|420409625|ref|ZP_14908771.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori NQ4200]
gi|393029739|gb|EJB30819.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori NQ4200]
Length = 484
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPE-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDV---- 316
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 317 -------------------ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|209517599|ref|ZP_03266438.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
gi|209502012|gb|EEA02029.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
Length = 510
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 112/388 (28%), Positives = 198/388 (51%), Gaps = 34/388 (8%)
Query: 22 TFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQ 78
TF F + L+AI + G+ PT IQ +AIP++L +DV+ A+TG+GKT +F++P+IQ
Sbjct: 34 TFDQFGLAPDILKAIKESGYTSPTPIQAKAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 93
Query: 79 KIINLKQTAQV---QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSV 135
+++ T+ +AL+L+P++EL +Q+ N+Q + ++ + VD++
Sbjct: 94 RLLPQASTSASPARHPVRALILTPTRELADQVAANVQAYAKHTA--LRSAVVFGGVDMNP 151
Query: 136 QEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKF 195
Q L +I++ATP R L H++ KT +L ++++++DEAD + G+ D++ +L
Sbjct: 152 QSEQLRRGVEILIATPGRLLDHVQQKTANL-GQVQMLVLDEADRMLDMGFLPDLQRILNL 210
Query: 196 LPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATI 255
LPK Q +L SAT S ++ L LRNP +++ + + +A+ D+ +
Sbjct: 211 LPKERQTLLFSATFSGEIKKLAATYLRNPQTIEVARSNSTATNVTQVVYEVAEGDKTGAV 270
Query: 256 LYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQG 315
+ + + L Q I+F N+ +L LE+ + ++ + R A+ F +G
Sbjct: 271 VKLIRERGLKQ--VIVFCNSKIGASRLARSLERDGVVATAIHGDRSQSERMQALDAFKRG 328
Query: 316 LYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIH 375
+ ++A+D A RG+D + VINFD P + + Y+H
Sbjct: 329 EVEALVATDVAA-----------------------RGLDIAELPAVINFDLPFNAEDYVH 365
Query: 376 RAGRTARGKNQGTALSFVSLREQDLMND 403
R GRT R G ALS S E+ + D
Sbjct: 366 RIGRTGRAGASGDALSLCSPNERKQLAD 393
>gi|118475108|ref|YP_891966.1| putative ATP-dependent RNA helicase RhlE [Campylobacter fetus
subsp. fetus 82-40]
gi|118414334|gb|ABK82754.1| putative ATP-dependent RNA helicase RhlE [Campylobacter fetus
subsp. fetus 82-40]
Length = 624
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 117/375 (31%), Positives = 192/375 (51%), Gaps = 28/375 (7%)
Query: 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIIN 82
F L L+A+ +L + PT IQ+ AIP I+Q KD+L ARTG+GKT AFA+P+++K+ +
Sbjct: 6 FDLSSAILEALKELNYDAPTQIQQVAIPAIMQGKDILAGARTGTGKTAAFALPILEKLSS 65
Query: 83 LKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVE 142
++ + +T+ LVL P++EL NQ+ +NI+ K K + + V Q L
Sbjct: 66 KERNKKRPQTRVLVLVPTRELANQVTQNIKSYAKKLP--FKTLPVFGGVSSYPQIQALKS 123
Query: 143 RPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQA 202
DIVVATP R L L L+ ++ ++ DEAD +F G+ D+K ++K LP+ Q
Sbjct: 124 GIDIVVATPGRLLDLALQNALSLE-HIDTLVFDEADRMFDMGFIHDIKQIVKMLPEKRQN 182
Query: 203 ILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKL 262
+L SAT +V+SL + +L++P+ +++EE ++ + IL D+K +L + +
Sbjct: 183 LLFSATYPSEVMSLCNSMLKDPLRIQIEEQNSTALN-IIQRVILVDRDKKMELLNEVFGV 241
Query: 263 NLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIA 322
+ + ++F T K YL S L+ + R + +F G +++A
Sbjct: 242 ESID-QALVFTRTKRSADKCSSYLHTLGFSVAALHGDKSQSVRSKTLEKFKNGKTKILVA 300
Query: 323 SDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTAR 382
+D A RG+D + + VIN + P + Y+HR GRT R
Sbjct: 301 TDIAA-----------------------RGLDIKELPFVINLELPNVPEDYVHRIGRTGR 337
Query: 383 GKNQGTALSFVSLRE 397
N G A+S V + E
Sbjct: 338 AGNDGVAISLVCVDE 352
>gi|238028205|ref|YP_002912436.1| ATP-dependent RNA helicase 2 [Burkholderia glumae BGR1]
gi|237877399|gb|ACR29732.1| Putative ATP-dependent RNA helicase 2 [Burkholderia glumae BGR1]
Length = 480
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 112/388 (28%), Positives = 197/388 (50%), Gaps = 34/388 (8%)
Query: 22 TFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQ 78
TF F + L+AIA G+ +PT IQ +AIP++L +DV+ A+TG+GKT +F++P+IQ
Sbjct: 12 TFDQFGLAPDILKAIADQGYTKPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 79 KII---NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSV 135
+++ N + +AL+L+P++EL +Q+ N+ + ++ + VD++
Sbjct: 72 RLLPQANTSASPARHPVRALILTPTRELADQVAANVHSYAKHTA--LRSAVVFGGVDMNP 129
Query: 136 QEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKF 195
Q L +I++ATP R L H++ KT +L ++++++DEAD + G+ D++ +L
Sbjct: 130 QMAELRRGVEILIATPGRLLDHVQQKTANL-GQVQMLVLDEADRMLDMGFLPDLQRILNL 188
Query: 196 LPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATI 255
LPK Q +L SAT S ++ L L NP +++ + + +A+ D++A +
Sbjct: 189 LPKARQTLLFSATFSPEIKKLAATYLTNPQTIEVARSNATATNVTQIVYDIAEGDKQAAV 248
Query: 256 LYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQG 315
+ + L Q I+F N+ +L LE+ + ++ + R A+ F +G
Sbjct: 249 VKLIRDRALKQ--VIVFCNSKIGASRLARLLERDGVVATAIHGDRSQNERMQALEAFKRG 306
Query: 316 LYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIH 375
+ ++A+D A RG+D + VINFD P + Y+H
Sbjct: 307 EVEALVATDVAA-----------------------RGLDIAELPAVINFDLPFSAEDYVH 343
Query: 376 RAGRTARGKNQGTALSFVSLREQDLMND 403
R GRT R G ALS S E+ + D
Sbjct: 344 RIGRTGRAGASGDALSLCSPNERKQLAD 371
>gi|365984639|ref|XP_003669152.1| hypothetical protein NDAI_0C02490 [Naumovozyma dairenensis CBS 421]
gi|343767920|emb|CCD23909.1| hypothetical protein NDAI_0C02490 [Naumovozyma dairenensis CBS 421]
Length = 771
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 118/380 (31%), Positives = 200/380 (52%), Gaps = 37/380 (9%)
Query: 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII 81
T +L L+ +A LG+ +P+ IQ IP+ L KD++ A TGSGKT AF IP+I+++
Sbjct: 253 TLSLSRPVLKGLANLGYNKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERL- 311
Query: 82 NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQV---DVSVQEP 138
L + A+V T+ +VL+P++EL Q I ++ K + V + V ++ QE
Sbjct: 312 -LFKPAKVSSTRVIVLTPTRELAIQ----IADVAKKIGKFVNGLTFGLAVGGLNLRQQEQ 366
Query: 139 LLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPK 198
+L +RPDIV+ATP R + H++ S+EI+++DEAD + G+++++ +++ LP
Sbjct: 367 ILKQRPDIVIATPGRFIDHVRNSASFNVDSVEILVMDEADRMLEEGFQEELNEIMQLLPT 426
Query: 199 LYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAH--YHILAQEDEKATIL 256
Q +L SAT++ + L +L L+ PV + + P A S+L I ++ K +L
Sbjct: 427 KRQTMLFSATMNSKIKQLINLSLKKPVRIMINPPKQA-ASKLTQEFVRIRTRDHLKPALL 485
Query: 257 YTLLKL--NLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQ 314
+ L+K Q + ++FV + +KL++ L ++ L+ L + R +V +F
Sbjct: 486 FNLIKKLDEYSQKRMVVFVARKETAHKLRIILGLLGMNVAELHGSLTQEQRLESVTKF-- 543
Query: 315 GLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYI 374
K+LE P + T+ SRG+D + VIN+D P Y+
Sbjct: 544 -----------KSLEIPVLICTD----------LASRGLDIPKIEVVINYDMPKSYDIYL 582
Query: 375 HRAGRTARGKNQGTALSFVS 394
HR GRTAR +G ++S V
Sbjct: 583 HRVGRTARAGREGRSVSLVG 602
>gi|384896986|ref|YP_005772414.1| ATP-dependent RNA helicase [Helicobacter pylori Lithuania75]
gi|317012091|gb|ADU82699.1| ATP-dependent RNA helicase [Helicobacter pylori Lithuania75]
Length = 491
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPK-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|385217014|ref|YP_005778490.1| ATP-dependent RNA helicase [Helicobacter pylori F16]
gi|317177063|dbj|BAJ54852.1| ATP-dependent RNA helicase [Helicobacter pylori F16]
Length = 492
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPK-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|420419835|ref|ZP_14918923.1| ATP-dependent RNA helicase [Helicobacter pylori NQ4161]
gi|393039201|gb|EJB40233.1| ATP-dependent RNA helicase [Helicobacter pylori NQ4161]
Length = 491
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPK-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDV---- 316
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 317 -------------------ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|383320415|ref|YP_005381256.1| Superfamily II DNA and RNA helicase [Methanocella conradii HZ254]
gi|379321785|gb|AFD00738.1| Superfamily II DNA and RNA helicase [Methanocella conradii HZ254]
Length = 456
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 114/380 (30%), Positives = 196/380 (51%), Gaps = 33/380 (8%)
Query: 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIIN 82
+L L+AIA +G+ E T IQ +AIP LQ +DV+ +A+TG+GKT AF IPM++ ++
Sbjct: 7 LSLSAPTLKAIAAMGFEEATPIQGQAIPAALQGRDVIGQAQTGTGKTAAFGIPMVEA-VD 65
Query: 83 LKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVE 142
+K A + +V++P++EL Q+ + + + + V + I D+ Q L
Sbjct: 66 IKSEA----IQGIVITPTRELAVQVAEELNRIG--HFKGVHALPIYGGQDIKRQVSALKR 119
Query: 143 RPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQA 202
+P ++V TP R + H+K KT+ L + +V++DEAD + G+ +D++ +LK P+ Q
Sbjct: 120 KPQVIVGTPGRLIDHMKRKTVRL-GGIRMVVLDEADEMLDMGFIEDIERILKATPEGRQT 178
Query: 203 ILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKL 262
+L SAT+ + L +++PV + ++ ++ V ++ QE +K L LL +
Sbjct: 179 LLFSATIPAPISKLAARFMKDPVSIGIKSRSLT-VQGTEQAYLEVQERQKFEALCRLLDV 237
Query: 263 NLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIA 322
L I+FV T + +L L + ++ +L R + F +G +V++A
Sbjct: 238 QL-PALAIVFVRTKRRVDELARALSERGYQAEGIHGDLAQSKRDSVMRSFREGATEVLVA 296
Query: 323 SDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTAR 382
+D A RG+D V++V NFD P D Y+HR GRT R
Sbjct: 297 TDVAA-----------------------RGLDISGVTHVYNFDIPQDPDGYVHRIGRTGR 333
Query: 383 GKNQGTALSFVSLREQDLMN 402
+G A++FV+ RE L+
Sbjct: 334 AGKKGIAITFVTPRELGLLR 353
>gi|377820266|ref|YP_004976637.1| DEAD/DEAH box helicase [Burkholderia sp. YI23]
gi|357935101|gb|AET88660.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. YI23]
Length = 496
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 111/384 (28%), Positives = 199/384 (51%), Gaps = 31/384 (8%)
Query: 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII- 81
F L L+A+ + G+ PT IQ +AIP++L +DV+ A+TG+GKT +F++P+IQ+++
Sbjct: 22 FGLAADILKAVRESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQRLLP 81
Query: 82 --NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL 139
N + +AL+L+P++EL +Q+ N+Q T ++ + VD++ Q
Sbjct: 82 SANTSASPARHPVRALMLTPTRELADQVAANVQ--TYSKHTPLRSTVVFGGVDMNPQSDA 139
Query: 140 LVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199
L +I++ATP R L H++ KT++L ++++++DEAD + G+ D++ +L LPK
Sbjct: 140 LRRGVEILIATPGRLLDHVQQKTVNL-GQVQMLVLDEADRMLDMGFLPDLQRILNLLPKE 198
Query: 200 YQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTL 259
Q +L SAT S ++ L LRNP +++ + + + + E +K+ + L
Sbjct: 199 RQTLLFSATFSPEIKKLASTYLRNPQTIEVAR-SNSTATNVRQIVFEVHESDKSGAVAQL 257
Query: 260 LKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDV 319
++ ++ + I+F N+ +L LE+ I ++ + R A+ F +G +
Sbjct: 258 IRERELK-QVIVFCNSKIGASRLARVLEKDGIVATAIHGDRSQSERMQALDAFKRGEIEA 316
Query: 320 IIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGR 379
++A+D A RG+D + VINFD P + + Y+HR GR
Sbjct: 317 LVATDVAA-----------------------RGLDIAELPAVINFDLPFNAEDYVHRIGR 353
Query: 380 TARGKNQGTALSFVSLREQDLMND 403
T R G ALS S E+ + D
Sbjct: 354 TGRAGASGDALSLCSANERKQLAD 377
>gi|94265968|ref|ZP_01289692.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium
MLMS-1]
gi|93453471|gb|EAT03884.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium
MLMS-1]
Length = 369
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 107/362 (29%), Positives = 186/362 (51%), Gaps = 33/362 (9%)
Query: 33 IAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQET 92
IA G+ PT IQ +AIP I + +D++ A+TG+GKT AF +P++QK+
Sbjct: 16 IAACGYQAPTPIQTQAIPEIRRGRDIMGLAQTGTGKTAAFVLPLLQKL----SAGPRGRV 71
Query: 93 KALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPA 152
+A++++P++EL Q+H NI EL + ++ V + V Q +I+VA P
Sbjct: 72 RAVIVAPTRELAEQIHVNIGELGRQTG--IRSVAVYGGVSKFGQLKAFKAGVEIIVACPG 129
Query: 153 RALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSED 212
R L HL ++ ++L ++E++++DEAD++F G+ +K +LK+LP Q +L SAT+ +
Sbjct: 130 RLLDHLDSRDVNL-GAVEMLVLDEADMMFDMGFMPAIKKLLKYLPAKRQNLLFSATMPAE 188
Query: 213 VLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTIIF 272
+ L IL++P +++ P + +AH ++ K +L +++ + ++F
Sbjct: 189 IRHLADSILKDPARVQINH--TQPTALVAHKLYRVEKQGKGALLKQVMQESAFS-SALVF 245
Query: 273 VNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQ 332
T KL L LE+ L + R A+ F QG +++++A+D A
Sbjct: 246 TRTKHAAKKLALNLEKAGHRAVALQGNMSQNKRKAAMEGFKQGRFNIMVATDIAA----- 300
Query: 333 INSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSF 392
RGID +S+VIN+D P ++ Y HR GRT R + G A +F
Sbjct: 301 ------------------RGIDVAGISHVINYDMPATVEAYTHRIGRTGRAERNGEAYTF 342
Query: 393 VS 394
+
Sbjct: 343 AT 344
>gi|453364213|dbj|GAC80062.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia malaquae NBRC
108250]
Length = 574
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 128/422 (30%), Positives = 201/422 (47%), Gaps = 39/422 (9%)
Query: 32 AIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQE 91
A+ ++G+ P+ IQ IP +L+ +DV+ A+TG+GKT AFAIP++ +I ++
Sbjct: 27 AVDEVGYETPSPIQAATIPPLLEGRDVVGLAQTGTGKTAAFAIPVLSRI-----DTSARK 81
Query: 92 TKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATP 151
+ALVL+P++EL Q+ + K +VK + I VQ L ++V TP
Sbjct: 82 PQALVLAPTRELALQVSEAFGRYASKMP-EVKVLPIYGGQSYGVQLSGLRRGAQVIVGTP 140
Query: 152 ARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSE 211
R + HL TLDL S LE +++DEAD + + G+ +D++ +L P Q L SAT+
Sbjct: 141 GRVIDHLDKGTLDL-SELEFLVLDEADEMLTMGFAEDVERILADTPDKKQVALFSATMPA 199
Query: 212 DVLSLKHLILRNP--VILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+ L L NP V +K + A S + ++ K L +L++ G
Sbjct: 200 SIGRLARKYLNNPQEVTVKAK---TATASNITQKYLQVSHQRKLDALTRVLEVETFDG-M 255
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
IIF T +L L +S +N ++ R + Q G D+++A+D A
Sbjct: 256 IIFARTKSATEELAEKLRSRGLSAMAINGDMVQAQRERTINQLKDGSLDILVATDVAA-- 313
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
RG+D +S+V+N+D P D++ Y+HR GRT R GTA
Sbjct: 314 ---------------------RGLDVDRISHVVNYDIPHDVESYVHRIGRTGRAGRSGTA 352
Query: 390 LSFVSLREQDLMNDGTALSFVSLREQDL--MNDVNEYLMTNLHEDDFIIKPYQFNLDEVK 447
L FVS RE+ L+ + S+ E DL ++DVN + D NLD +
Sbjct: 353 LLFVSPRERHLLRSIERHTRQSIEEIDLPSVDDVNAQRVAKF-ADSITSNLGSSNLDMFR 411
Query: 448 GF 449
G
Sbjct: 412 GL 413
>gi|420473658|ref|ZP_14972336.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-19]
gi|393090786|gb|EJB91419.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-19]
Length = 491
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 108/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + + ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-RFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPE-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|421717811|ref|ZP_16157112.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R038b]
gi|407222603|gb|EKE92401.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R038b]
Length = 492
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMHLLDTQAPK-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|420399731|ref|ZP_14898935.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori CPY3281]
gi|393019272|gb|EJB20415.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori CPY3281]
Length = 492
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPK-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|375107400|ref|ZP_09753661.1| DNA/RNA helicase, superfamily II [Burkholderiales bacterium
JOSHI_001]
gi|374668131|gb|EHR72916.1| DNA/RNA helicase, superfamily II [Burkholderiales bacterium
JOSHI_001]
Length = 492
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 105/376 (27%), Positives = 199/376 (52%), Gaps = 31/376 (8%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII---NLKQTA 87
+A+A G+ T IQ +AIP++L +DV+ A+TG+GKT AF++P++QK++ N +
Sbjct: 36 RAVADQGYASMTPIQAKAIPIVLDGRDVMGAAQTGTGKTAAFSLPLLQKMLKHENASMSP 95
Query: 88 QVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
+ALVL+P++EL +Q+ N++ +++ + +D+ Q L +++
Sbjct: 96 ARHPVRALVLAPTRELADQVAANVKAYAKHT--NLRSTVVFGGIDMKPQTAELKAGVEVL 153
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
+ATP R L H++AK L + +E V++DEAD + G+ D++ +L +LP+ Q +L SA
Sbjct: 154 IATPGRLLDHIEAKNCVL-NQVEYVVLDEADRMLDIGFLPDLQRILSYLPRQRQTLLFSA 212
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
T S ++ L + L++PV++++ P + ++ + +D++ ++ L +L Q
Sbjct: 213 TFSPEIKRLANSYLQDPVLVEVARPNATATNVEQRFYSVTDDDKRRVVMQLLRNRSLSQA 272
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
I+FVN+ +L E+ + T L+ + R ++ F +G ++++A+D A
Sbjct: 273 --IVFVNSKLGAARLARSFERDGLKTSALHGDKSQDERLKSLDAFKRGDVELLVATDVAA 330
Query: 328 LETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQG 387
RG+D + V NFD P + + Y+HR GRT R G
Sbjct: 331 -----------------------RGLDIADLPAVFNFDVPFNAEDYVHRIGRTGRAGASG 367
Query: 388 TALSFVSLREQDLMND 403
A++ V+ + L++D
Sbjct: 368 LAVTLVTRDDARLISD 383
>gi|94311518|ref|YP_584728.1| RNA helicase [Cupriavidus metallidurans CH34]
gi|93355370|gb|ABF09459.1| RNA helicase [Cupriavidus metallidurans CH34]
Length = 556
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 199/383 (51%), Gaps = 38/383 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII---NLKQT 86
L+A+ + G+ +PT IQ +AIP++L KDV+ A+TG+GKT FA+P+IQ+++ N +
Sbjct: 85 LRALTEQGYTKPTPIQAQAIPVVLLGKDVMGAAQTGTGKTAGFALPIIQRLLPLANASAS 144
Query: 87 AQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDI 146
+AL+L+P++EL +Q++ N+ D++ + VD++ Q L +I
Sbjct: 145 PARHPVRALMLTPTRELADQVYDNVARYAKHT--DLRSTVVFGGVDMNPQTDALRRGVEI 202
Query: 147 VVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
+VATP R L H++ K+++L S ++++++DEAD + G+ D++ ++ LP Q +L S
Sbjct: 203 LVATPGRLLDHVQQKSVNL-SQVQMLVLDEADRMLDMGFLPDLQRIINLLPAQRQTLLFS 261
Query: 207 ATLSEDVLSLKHLILRNPVILKLEEPAIA--PVSQLAHYHILAQEDEKATILYTLLK--L 262
AT S ++ L L+ PV +++ V Q+ Y + Q+ K + LLK
Sbjct: 262 ATFSPEIKKLASSYLKQPVTIEVARSNSTNENVRQVV-YQV--QDGHKQAAVVHLLKQRA 318
Query: 263 NLVQGK-TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVII 321
N Q + I+FVN+ C +L +LE+ I+ ++ + R + F G D ++
Sbjct: 319 NEQQSRQCIVFVNSKIGCSRLARHLEREGINAAAIHGDKTQTERMQTLDGFKNGTIDALV 378
Query: 322 ASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTA 381
A+D A RG+D + VINFD P + Y+HR GRT
Sbjct: 379 ATDVAA-----------------------RGLDIPAMPCVINFDLPFSAEDYVHRIGRTG 415
Query: 382 RGKNQGTALS-FVSLREQDLMND 403
R G ALS FV + L+ D
Sbjct: 416 RAGASGDALSIFVPGNDDRLLAD 438
>gi|420459761|ref|ZP_14958560.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-27]
gi|393076863|gb|EJB77612.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-27]
Length = 492
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKYTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPK-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|387907613|ref|YP_006337947.1| ATP-dependent RNA helicase [Helicobacter pylori XZ274]
gi|387572548|gb|AFJ81256.1| ATP-dependent RNA helicase [Helicobacter pylori XZ274]
Length = 492
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKSPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPK-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|398406547|ref|XP_003854739.1| RNA-dependent ATPase [Zymoseptoria tritici IPO323]
gi|339474623|gb|EGP89715.1| hypothetical protein MYCGRDRAFT_84402 [Zymoseptoria tritici IPO323]
Length = 446
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 116/366 (31%), Positives = 188/366 (51%), Gaps = 35/366 (9%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ 90
+A LG+ +PT IQ AIP+ L+ KD++ A TGSGKT AFA+P++Q++++ + Q
Sbjct: 49 EACTALGFTKPTAIQREAIPIALEGKDIIGLAETGSGKTAAFALPILQELLD-----KPQ 103
Query: 91 ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVAT 150
LVL+P++EL Q+ + + L S V+C I +D+ Q L ++P IVVAT
Sbjct: 104 PMFGLVLAPTRELAYQISQQFEALGSLIS--VRCAVIVGGMDMVPQAIALAKKPHIVVAT 161
Query: 151 PARALAHLK-AKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
P R L HL+ K L+ L+ +++DEAD + + + + + LP+ + +L SAT+
Sbjct: 162 PGRLLDHLENTKGFSLR-QLKYLVMDEADRLLDLDFGPILDKIFQVLPRERRTMLFSATM 220
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
S + +L L+ PV + + + V L +I K +Y + LN G+T
Sbjct: 221 STKLNNLTRAALQQPVKVSISSSSYQTVKNLMQRYIFIPHKFKD--IYLVYLLNEFAGQT 278
Query: 270 -IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL 328
I+F T+++ ++ L S L+ ++ AR A+ +F G D+++A+D A
Sbjct: 279 CIVFTRTINETARIAFLLRALGRSAIPLHGQMNQSARLGALNKFRGGHRDILVATDVAA- 337
Query: 329 ETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGT 388
RG+D V V+NFD P D + Y+HR GRTAR G
Sbjct: 338 ----------------------RGLDIPSVDLVLNFDLPPDSKTYVHRVGRTARAGKSGV 375
Query: 389 ALSFVS 394
A+S V+
Sbjct: 376 AISVVT 381
>gi|384887274|ref|YP_005761785.1| DEAD/DEAH box helicase [Helicobacter pylori 52]
gi|261839104|gb|ACX98869.1| DEAD-box ATP dependent DNA helicase [Helicobacter pylori 52]
Length = 492
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNADITQRFYVI-NEHERAEAIMRLLDTQAPK-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRTSIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|330840963|ref|XP_003292476.1| hypothetical protein DICPUDRAFT_157190 [Dictyostelium purpureum]
gi|325077283|gb|EGC31006.1| hypothetical protein DICPUDRAFT_157190 [Dictyostelium purpureum]
Length = 780
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 136/486 (27%), Positives = 234/486 (48%), Gaps = 73/486 (15%)
Query: 10 PTLIQVYFELPFTFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKT 69
PT +++ P L+A+ KLG+ +PT IQ + IPL L KD+L A TGSGKT
Sbjct: 182 PTFEELHLSRPL--------LKAVQKLGFSQPTPIQAKTIPLALNGKDILASASTGSGKT 233
Query: 70 GAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISE 129
AF +P+++++ L + ++ + + LVL P++EL Q ++ L + S C+ I
Sbjct: 234 AAFLLPILERL--LFRDSEYRAIRVLVLLPTRELALQCQSVLENLA-QFSNITSCL-IVG 289
Query: 130 QVDVSVQEPLLVERPDIVVATPARALAH-LKAKTLDLKSSLEIVIIDEADLVFSFGYEDD 188
+ QE L +RPD+V+ATP R + H L A + L+ LEI+I+DEAD + G++D+
Sbjct: 290 GLSNKAQEVELRKRPDVVIATPGRLIDHLLNAHGIGLE-DLEILILDEADRLLDMGFKDE 348
Query: 189 MKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEP-AIAPVSQLAHYHILA 247
+ ++ P Q +L SATL+++V +L L L+ P+ ++++ +A I +
Sbjct: 349 INKIVDSCPTSRQTMLFSATLNDEVKTLAKLSLQQPIRVQVDALFQVASTLDQEFVKIKS 408
Query: 248 QE-DEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARC 306
Q ++ IL +L G TIIF + + ++L + + L+ L + R
Sbjct: 409 QHLSDRPAILMSLCTRVFNTGGTIIFCRSKKEVHRLCIIFGLSDLKAAELHGNLSQEQRF 468
Query: 307 HAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDF 366
++ QF G + ++ASD SRG+D V VIN++
Sbjct: 469 DSLQQFRDGKVNYLLASD-----------------------VASRGLDIIGVKTVINYNM 505
Query: 367 PLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND---------------GTALSFVS 411
P + YIHR GRTAR +G + SF++ ++ ++ + ++F
Sbjct: 506 PNTLAQYIHRVGRTARAGMEGKSCSFITENDRKILKEIVTKARNKAKSRSVSQDNVNFWR 565
Query: 412 LREQDLMNDVNEYLMTNLHEDDF-------------IIKPYQFNLD------EVKGFEYR 452
R ++L D+ E + L E D I KP++ N + + K E +
Sbjct: 566 NRIEELTEDIREIVRDELKEADLRKAEKALDKAEKVISKPFEENTETERVWYKTKSEEEK 625
Query: 453 AKDAWR 458
+K+ W+
Sbjct: 626 SKELWK 631
>gi|187935259|ref|YP_001885538.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum B str.
Eklund 17B]
gi|187723412|gb|ACD24633.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum B str.
Eklund 17B]
Length = 480
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 112/370 (30%), Positives = 200/370 (54%), Gaps = 33/370 (8%)
Query: 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIIN 82
F L L+AI LG+ P+ +QE+AIP IL+NKD++V+++TGSGKT +F IP+ +KI
Sbjct: 8 FELSGELLKAIDNLGYKTPSEVQEKAIPEILRNKDLVVKSQTGSGKTASFGIPLCEKIDW 67
Query: 83 LKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVE 142
+ QV LVL+P++EL Q+ ++I + + + CV I + + QE L +
Sbjct: 68 DENKPQV-----LVLAPTRELAVQISEDISNIGR--YKRINCVPIFGKQSIMDQERKLKQ 120
Query: 143 RPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQA 202
+ IVV TP R L H+ +LD+ S +IDEAD + + G+ ++A+++ +PK
Sbjct: 121 KTHIVVGTPGRVLDHIDRGSLDV-SKTNYFVIDEADEMLNMGFIKQVEAIIRRIPKKRVT 179
Query: 203 ILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKL 262
+L SAT+ E++ +L + P+ + ++ + ++HY ++K +L +L +
Sbjct: 180 LLFSATIPEEIKNLCDKHMNRPIDIAIKSQNLTS-DNVSHYAYHVGYNQKLDLLNNIL-I 237
Query: 263 NLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIA 322
+ + +++F T + + YL + ST ++ + K R + QF +G + +++A
Sbjct: 238 SEMPETSVVFCRTKENVDTVHEYLNKKGYSTNKIHGGMMQKDRLDTMEQFRRGDFRILVA 297
Query: 323 SDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTAR 382
+D SRGID + +++VIN+D P++ + Y+HR GRT R
Sbjct: 298 TDI-----------------------ASRGIDIEGITHVINYDIPVEKEAYVHRIGRTGR 334
Query: 383 GKNQGTALSF 392
+G AL+F
Sbjct: 335 AGAKGVALTF 344
>gi|260584701|ref|ZP_05852447.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Granulicatella
elegans ATCC 700633]
gi|260157724|gb|EEW92794.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Granulicatella
elegans ATCC 700633]
Length = 509
Score = 177 bits (450), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 115/387 (29%), Positives = 204/387 (52%), Gaps = 36/387 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L++I K+G+ E T IQ + IPL L KDV+ +A+TG+GKT +F +PM+QK INL+
Sbjct: 13 LESIEKMGFEEATPIQSQTIPLALAGKDVIGQAQTGTGKTASFGLPMLQK-INLRN---- 67
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
++ + LV++P++EL Q + + L V+ V D+ Q L ++P IVV
Sbjct: 68 RKVQGLVIAPTRELAIQTQEELYRLGKDKKIHVQAV--YGGADIGRQIRQLKDQPHIVVG 125
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H+ KTL L ++E +++DEAD + + G+ +D+++++K +P+ Q +L SAT+
Sbjct: 126 TPGRLLDHISRKTLRL-DNIETLVLDEADEMLNMGFLEDIESIIKLVPENRQTLLFSATM 184
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+D+ + ++ P ++++ + + + Y + ++ EK I+ LL + + T
Sbjct: 185 PDDIKRIGVQFMKEPEHVRIKSSEMT-ATLIDQYFVKCKDFEKFDIMTRLLDVQTPE-LT 242
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L LE ++ +L + R + F D+++A+D A
Sbjct: 243 IVFGRTKRRVDELARGLEMRGFRAEGIHGDLSQQKRMSVLRDFKNNHLDILVATDVAA-- 300
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
RG+D V++V N+D P D + Y+HR GRT R +G +
Sbjct: 301 ---------------------RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQEGMS 339
Query: 390 LSFVSLREQD---LMNDGTALSFVSLR 413
++FV+ E D ++ D T +LR
Sbjct: 340 VTFVTPNEMDYLRVIEDLTRKRMTALR 366
>gi|385226514|ref|YP_005786438.1| ATP-dependent RNA helicase [Helicobacter pylori SNT49]
gi|344331427|gb|AEN16457.1| ATP-dependent RNA helicase [Helicobacter pylori SNT49]
Length = 492
Score = 177 bits (450), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPK-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRTSIIAFKKNDADVLVATDV---- 316
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 317 -------------------ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|420456516|ref|ZP_14955337.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-16]
gi|393075147|gb|EJB75902.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-16]
Length = 491
Score = 177 bits (450), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPE-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLVSKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|389818136|ref|ZP_10208577.1| ATP-dependent RNA helicase exp9 [Planococcus antarcticus DSM 14505]
gi|388464068|gb|EIM06404.1| ATP-dependent RNA helicase exp9 [Planococcus antarcticus DSM 14505]
Length = 507
Score = 177 bits (450), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 111/378 (29%), Positives = 198/378 (52%), Gaps = 43/378 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ ++G+ E T IQE I L ++ KD++ +A+TG+GKT AF IP+I+KI Q
Sbjct: 14 LKSVKRMGFEEATPIQEGTIRLGMEGKDIIGQAQTGTGKTTAFGIPLIEKIDTKDGNVQ- 72
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
L+++P++EL Q+ + + L ++V+ + + ++S Q L RP I+V
Sbjct: 73 ----GLIIAPTRELAIQVSEELYRLGQ--DKNVRILSVYGGQEISRQIRALKNRPQIIVG 126
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H+ +TL L ++ +I+DEAD + + G+ +D++ ++ +P Q +L SAT+
Sbjct: 127 TPGRLLDHINRRTLKL-DNVNTLILDEADEMLNMGFIEDIQTIMASVPDTRQTLLFSATM 185
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLL-----KLNL 264
+ + + ++ P I+K++ + V + +++ + E EK L LL +L +
Sbjct: 186 PDAIRRIAEKFMKTPEIVKIKSKEMT-VENIEQFYVKSVEREKFDFLSRLLNVQQPELAI 244
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
V G+T V+ + K ++ YL + ++ +L R + QF G D+++A+D
Sbjct: 245 VFGRTKRRVDELAKALNIRGYLAEG------IHGDLSQAKRMSVLKQFKAGKIDILVATD 298
Query: 325 EKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384
A RG+D VS+V NFD P D + Y+HR GRT R
Sbjct: 299 VAA-----------------------RGLDISGVSHVYNFDIPQDPESYVHRIGRTGRAG 335
Query: 385 NQGTALSFVSLREQDLMN 402
+G A++FV+ RE +
Sbjct: 336 KKGVAVTFVTPREMGYLG 353
>gi|255023649|ref|ZP_05295635.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J1-208]
Length = 399
Score = 177 bits (450), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 110/373 (29%), Positives = 199/373 (53%), Gaps = 43/373 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++++ ++G+ E T IQE+ IPL L KD++ +A+TG+GKT AF +PMI KI Q
Sbjct: 16 VKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHKIDQKSNNVQ- 74
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
AL+++P++EL Q+ + + +L+ + V+ + + D+S Q L + P IVV
Sbjct: 75 ----ALIIAPTRELAIQVSEELYKLS--YDKHVRVLAVYGGSDISRQIRSLKKNPQIVVG 128
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H+ +TL L +E +++DEAD + + G+ DD++ +LK +P Q +L SAT+
Sbjct: 129 TPGRILDHINRRTLKL-DHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLLFSATM 187
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLL-----KLNL 264
+ + + + +P +++++ + + + + + E EK +L LL +L +
Sbjct: 188 PDPIRRIGERFMHSPELIRIKAKEMTALL-IEQFFVKVHEKEKFDVLSRLLDVQAPELAI 246
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
V G+T V+ + + ++ Y+ + ++ +L R + +F +G DV++A+D
Sbjct: 247 VFGRTKRRVDELSRALDMRGYVAEG------IHGDLTQAKRMSVLRKFKEGKIDVLVATD 300
Query: 325 EKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384
A RG+D V++V N+D P D + Y+HR GRT R
Sbjct: 301 VAA-----------------------RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG 337
Query: 385 NQGTALSFVSLRE 397
+G A++FV RE
Sbjct: 338 KEGMAITFVQPRE 350
>gi|208434194|ref|YP_002265860.1| ATP-dependent RNA helicase [Helicobacter pylori G27]
gi|208432123|gb|ACI26994.1| ATP-dependent RNA helicase [Helicobacter pylori G27]
Length = 492
Score = 177 bits (450), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPK-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|172061278|ref|YP_001808930.1| DEAD/DEAH box helicase [Burkholderia ambifaria MC40-6]
gi|171993795|gb|ACB64714.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MC40-6]
Length = 511
Score = 177 bits (450), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 116/386 (30%), Positives = 199/386 (51%), Gaps = 35/386 (9%)
Query: 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIIN 82
F L L+AIA+ G+ PT IQ +AIP++L +DV+ A+TG+GKT +F++P+IQ+++
Sbjct: 38 FGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQRLLP 97
Query: 83 LKQTAQV---QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL 139
T+ +AL+L+P++EL +Q+ N+ S ++ + VD++ Q
Sbjct: 98 QASTSASPARHPVRALILTPTRELADQVAANVHAYAKHTS--LRSAVVFGGVDMNPQMAE 155
Query: 140 LVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199
L +I++ATP R L H++ KT +L ++I+++DEAD + G+ D++ +L LPK
Sbjct: 156 LRRGVEILIATPGRLLDHVQQKTANL-GQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 214
Query: 200 YQAILASATLSEDVLSLKHLILRNPVILKL--EEPAIAPVSQLAHYHILAQEDEKATILY 257
Q +L SAT S ++ L LRNP +++ A V+Q+ + +A+ D+ ++
Sbjct: 215 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYD--VAEGDKHGAVVQ 272
Query: 258 TLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLY 317
L L Q ++F N+ +L LE+ + ++ + R A+ F +G
Sbjct: 273 LLRDRGLKQ--VLVFCNSKIGASRLARNLERDGVVASAIHGDKSQLERMQALDAFKRGEI 330
Query: 318 DVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRA 377
+ ++A+D A RG+D + VINFD P + + Y+HR
Sbjct: 331 EALVATDVAA-----------------------RGLDIAELPAVINFDLPFNAEDYVHRI 367
Query: 378 GRTARGKNQGTALSFVSLREQDLMND 403
GRT R G ALS S E+ + D
Sbjct: 368 GRTGRAGATGDALSLCSPNERKQLAD 393
>gi|420397037|ref|ZP_14896255.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori CPY1313]
gi|393012699|gb|EJB13877.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori CPY1313]
Length = 492
Score = 177 bits (450), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPK-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFARTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDV---- 316
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 317 -------------------ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|210134447|ref|YP_002300886.1| ATP-dependent RNA helicase [Helicobacter pylori P12]
gi|210132415|gb|ACJ07406.1| ATP-dependent RNA helicase [Helicobacter pylori P12]
Length = 492
Score = 177 bits (450), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMHLLDTQAPK-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDV---- 316
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 317 -------------------ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|157960630|ref|YP_001500664.1| ATP-dependent RNA helicase SrmB [Shewanella pealeana ATCC 700345]
gi|157845630|gb|ABV86129.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
700345]
Length = 411
Score = 177 bits (450), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 116/368 (31%), Positives = 190/368 (51%), Gaps = 30/368 (8%)
Query: 27 CIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQT 86
C+ L+++ +G +PT IQ++ IP+ ++ +D+L RA TG+GKT +F +P +Q +I+ +
Sbjct: 14 CL-LESLKAMGHNKPTTIQQQTIPVAMEQRDILARAPTGTGKTASFLLPALQHLIDFPRR 72
Query: 87 AQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDI 146
+ L+L+P++EL +Q+H+ L D V I+ V QE L + DI
Sbjct: 73 YG-GRARVLILTPTRELASQIHRYASHLATGLGLD--TVIITGGVPYGPQEEALQKNVDI 129
Query: 147 VVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
+VATP R + +L + + +E++IIDEAD + G+ ++++ Q +L S
Sbjct: 130 LVATPGRLMEYLDKGHFNAE-EVEVLIIDEADRMLDMGFSAVVESIAIESVGRKQTMLFS 188
Query: 207 ATL-SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLV 265
ATL DV H +L NPV L+ E P H+ + K +L LLK V
Sbjct: 189 ATLEGSDVGRFSHNLLTNPVKLEAEAPRSEKAKIHQWIHLADDKAHKFALLCALLKQEEV 248
Query: 266 QGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE 325
Q +TI+FV T + L+ L++ I+ + ++ KAR A+ +F +G ++++A+D
Sbjct: 249 Q-RTIVFVKTRESVASLEGLLQKEGITCAFMRGDMEQKARFQALGRFTKGEVNILLATDV 307
Query: 326 KALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKN 385
A RGID +++VINFD P Y+HR GRT R
Sbjct: 308 AA-----------------------RGIDIDDITHVINFDMPRSADTYVHRIGRTGRAGA 344
Query: 386 QGTALSFV 393
+GTA+S V
Sbjct: 345 KGTAISLV 352
>gi|319902155|ref|YP_004161883.1| DEAD/DEAH box helicase domain protein [Bacteroides helcogenes P
36-108]
gi|319417186|gb|ADV44297.1| DEAD/DEAH box helicase domain protein [Bacteroides helcogenes P
36-108]
Length = 415
Score = 177 bits (450), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 117/373 (31%), Positives = 202/373 (54%), Gaps = 36/373 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L A+ + + E T IQE++IP+IL+ +D++ A+TG+GKT A+ +P++ NL +
Sbjct: 13 LDALDAMRFDECTPIQEKSIPVILEGRDLIAVAQTGTGKTAAYLLPVLN---NLSEGKHP 69
Query: 90 QET-KALVLSPSKELCNQLHKNIQELT--MKCSRDVKCVDISEQVDVSVQEPLLVERPDI 146
+++ +++SP++EL Q+ + ++ + M S V ++ + Q+ L D+
Sbjct: 70 EDSINCIIMSPTRELAQQIDQQMEGFSYFMPVS-SVAVYGGNDGILFEQQKKGLTLGADV 128
Query: 147 VVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
V+ATP R +AHL +DL S + I+DEAD + G+ DD+ ++KFLPK Q I+ S
Sbjct: 129 VIATPGRLIAHLSLGYVDL-SRVTYFILDEADRMLDMGFYDDIMQIVKFLPKERQTIMFS 187
Query: 207 ATLSEDVLSLKHLILRNPVILKLEEPAIA-PVSQLAHYHILAQEDEKATILYTLLKLNLV 265
AT+ + L + IL NP +KL A++ P ++ + E++K I+ L
Sbjct: 188 ATMPTKIQQLANNILNNPAEVKL---AVSKPADKIVQAAYVCYENQKLGIIRNLFAEQTP 244
Query: 266 QGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE 325
+ + IIF ++ K ++ L+Q K++ ++S+L R +Y+F G ++++A+D
Sbjct: 245 E-RVIIFASSKLKVKEVTKALKQMKLNVGEMHSDLEQAQREDVMYEFKAGRINILVATDI 303
Query: 326 KALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKN 385
V+RGID + VIN+D P D + Y+HR GRTAR N
Sbjct: 304 -----------------------VARGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANN 340
Query: 386 QGTALSFVSLREQ 398
G AL+F+S +EQ
Sbjct: 341 DGVALTFISEKEQ 353
>gi|385220091|ref|YP_005781563.1| ATP-dependent RNA helicase [Helicobacter pylori India7]
gi|317008898|gb|ADU79478.1| ATP-dependent RNA helicase [Helicobacter pylori India7]
Length = 492
Score = 177 bits (450), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPK-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|255691877|ref|ZP_05415552.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides
finegoldii DSM 17565]
gi|260622430|gb|EEX45301.1| DEAD/DEAH box helicase [Bacteroides finegoldii DSM 17565]
Length = 421
Score = 177 bits (450), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 118/372 (31%), Positives = 199/372 (53%), Gaps = 34/372 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+ + + E T IQE+AIP+IL+ KD++ A+TG+GKT AF +P++ K+
Sbjct: 13 LEALDAMRFDECTPIQEQAIPIILEGKDLIAVAQTGTGKTAAFLLPVLNKLSEGNHPEDA 72
Query: 90 QETKALVLSPSKELCNQLHKNIQELT--MKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
+++SP++EL Q+ + ++ + M S V ++ + Q+ L D+V
Sbjct: 73 --INCIIMSPTRELAQQIDQQMEGFSYFMPVS-SVAVYGGNDGILFEQQKKGLTLGADVV 129
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
+ATP R +AHL +DL S + I+DEAD + G+ DD+ ++K+LPK Q ++ SA
Sbjct: 130 IATPGRLIAHLSLGYVDL-SKVSYFILDEADRMLDMGFYDDIMQIVKYLPKERQTVMFSA 188
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIA-PVSQLAHYHILAQEDEKATILYTLLKLNLVQ 266
T+ + L + IL NP +KL A++ P ++ + E++K I+ +L + V
Sbjct: 189 TMPAKIQQLANTILNNPSEIKL---AVSKPAEKIIQAAYVCYENQKLGIIRSLFA-DEVP 244
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
+ IIF ++ K ++ L K++ ++S+L R +++F G ++++A+D
Sbjct: 245 ERVIIFASSKIKVKEVAKALMAMKLNVGEMHSDLEQAQRETVMHEFKAGRVNILVATDI- 303
Query: 327 ALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQ 386
V+RGID + VINFD P D + Y+HR GRTAR N
Sbjct: 304 ----------------------VARGIDIDDIRLVINFDVPHDSEDYVHRIGRTARANND 341
Query: 387 GTALSFVSLREQ 398
G AL+FVS +EQ
Sbjct: 342 GVALTFVSEKEQ 353
>gi|42518357|ref|NP_964287.1| RNA helicase [Lactobacillus johnsonii NCC 533]
gi|41582642|gb|AAS08253.1| probable RNA helicase [Lactobacillus johnsonii NCC 533]
Length = 484
Score = 177 bits (450), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 119/377 (31%), Positives = 198/377 (52%), Gaps = 43/377 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINL-KQTAQ 88
L+AI + G+ E T IQE+ IPL+L+ KDV+ +A+TG+GKT AF +P++Q NL KQ
Sbjct: 13 LKAIKRSGFEEATPIQEKTIPLVLEGKDVIGQAQTGTGKTAAFGLPILQ---NLDKQHDS 69
Query: 89 VQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCV--DISEQVDVSVQEPLLVERPDI 146
+Q A+++ P++EL Q QE + RD K + D+ Q L + P I
Sbjct: 70 IQ---AIIIEPTRELAIQ----TQEELFRLGRDEKARVQVVYGGADIRRQIRALKQTPAI 122
Query: 147 VVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
+V TP R L HLK T+D+ S ++ +++DEAD + G+ D++++LK+ +Q +L S
Sbjct: 123 LVGTPGRLLDHLKRGTIDI-SKVKTIVLDEADEMLDMGFIQDIESILKYASSKHQTLLFS 181
Query: 207 ATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQ 266
AT+ + +L + + +P I+K++ + + + Y + A+E+EK IL L+ VQ
Sbjct: 182 ATMPKPILRIGEKFMNDPEIVKIKGKELT-ANLIDQYFVRAKENEKFDILCRLID---VQ 237
Query: 267 GK--TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
+IF T + +L L+ + ++ +L R + +F +G D+++A+D
Sbjct: 238 NPDLAVIFGRTKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDILVATD 297
Query: 325 EKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384
A RG+D VS+V N+D P D Y+HR GRT R
Sbjct: 298 VAA-----------------------RGLDISGVSHVYNYDIPQDPNSYVHRIGRTGRAG 334
Query: 385 NQGTALSFVSLREQDLM 401
G +++FV+ E M
Sbjct: 335 QNGMSVTFVTPNEIGYM 351
>gi|420447374|ref|ZP_14946266.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-43]
gi|393062789|gb|EJB63637.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-43]
Length = 492
Score = 177 bits (450), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPK-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLVSKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|162447297|ref|YP_001620429.1| DEAD box ATP-dependent RNA helicase [Acholeplasma laidlawii PG-8A]
gi|161985404|gb|ABX81053.1| DEAD box ATP-dependent RNA helicase [Acholeplasma laidlawii PG-8A]
Length = 547
Score = 177 bits (450), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 110/363 (30%), Positives = 192/363 (52%), Gaps = 32/363 (8%)
Query: 32 AIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQE 91
A+ KLG+ E T IQE+AIP ++ D++ +A+TG+GKT AF IPM++K +++
Sbjct: 17 ALEKLGFTEATPIQEQAIPKMILGLDLIGQAQTGTGKTFAFGIPMVEKT-----DTSLRQ 71
Query: 92 TKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATP 151
T+ L+L+P++EL NQ++K I +L +K +++ I Q L +P I+VATP
Sbjct: 72 TQGLILTPTRELTNQVYKEIIKL-VKFYPELRVTTIVGGESYEKQFKELDRKPHIIVATP 130
Query: 152 ARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSE 211
R + H+ T+DL S + + +DEAD + G++DD++ +L+ P+ Q +L SAT+
Sbjct: 131 GRIIDHIDRGTVDL-SHITTLTLDEADEMLKMGFQDDIERILQTTPETRQTVLFSATMPA 189
Query: 212 DVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTII 271
+ + +NP ++K+E ++ V ++ + L +E EK ++L LL II
Sbjct: 190 FIKKIAKNYQKNPELIKIEAKSLT-VDRITQAYFLVKEKEKQSLLERLLDFE-NPSTAII 247
Query: 272 FVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETP 331
FVNT ++ L++ + L+ +L R + + +F +++A+D A
Sbjct: 248 FVNTKAGADRITESLQKAGFTADALHGDLKQSQRTYVMNRFRSKQLSILVATDVAA---- 303
Query: 332 QINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALS 391
RG+D V ++N+D P + Y+HR GRT R +G A +
Sbjct: 304 -------------------RGLDVDDVEIIVNYDLPQQDEIYVHRIGRTGRAGKKGKAFT 344
Query: 392 FVS 394
FV+
Sbjct: 345 FVT 347
>gi|393788148|ref|ZP_10376279.1| hypothetical protein HMPREF1068_02559 [Bacteroides nordii
CL02T12C05]
gi|392656361|gb|EIY50000.1| hypothetical protein HMPREF1068_02559 [Bacteroides nordii
CL02T12C05]
Length = 413
Score = 177 bits (450), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 118/372 (31%), Positives = 201/372 (54%), Gaps = 34/372 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+ + + E T IQE+AIP+IL+ +D++ A+TG+GKT AF +P++ K+ +
Sbjct: 13 LEALDAMRFDECTPIQEQAIPVILEGRDLIAVAQTGTGKTAAFLLPVLNKLSEGEHPEDA 72
Query: 90 QETKALVLSPSKELCNQLHKNIQELT--MKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
+V+SP++EL Q+ + ++ + M S V ++ V Q+ L D+V
Sbjct: 73 --INCVVMSPTRELAQQIDQQMEGFSYFMPVS-SVAVYGGNDGVLFEQQKKGLTLGADVV 129
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
+ATP R +AHL +DL S + I+DEAD + G+ +D+ ++K+LPK Q I+ SA
Sbjct: 130 IATPGRLIAHLSLGYVDL-SKVSYFILDEADRMLDMGFYEDIMQIVKYLPKERQTIMFSA 188
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIA-PVSQLAHYHILAQEDEKATILYTLLKLNLVQ 266
T+ + L IL NP +KL A++ P ++ + E++K I+ +L + + +
Sbjct: 189 TMPAKIQQLAKTILNNPAEVKL---AVSKPAEKIVQAAYVCYENQKLGIVRSLFEEEVPE 245
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
+ IIF ++ K ++ L+ K++ ++S+L R +++F G ++++A+D
Sbjct: 246 -RVIIFASSKIKVKEVAKALKMMKLNVGEMHSDLEQAQREFIMHEFKSGRINILVATDI- 303
Query: 327 ALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQ 386
VSRGID + VINFD P D + Y+HR GRTAR N
Sbjct: 304 ----------------------VSRGIDIDDIRLVINFDVPHDSEDYVHRIGRTARANND 341
Query: 387 GTALSFVSLREQ 398
G AL+FV+ +EQ
Sbjct: 342 GVALTFVNEKEQ 353
>gi|333030152|ref|ZP_08458213.1| DEAD/DEAH box helicase domain protein [Bacteroides coprosuis DSM
18011]
gi|332740749|gb|EGJ71231.1| DEAD/DEAH box helicase domain protein [Bacteroides coprosuis DSM
18011]
Length = 404
Score = 177 bits (450), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 112/370 (30%), Positives = 196/370 (52%), Gaps = 30/370 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+ + + E T IQE+AIP+IL+NKD++ A+TG+GKT AF +P++ K+ K
Sbjct: 13 LEALDAMNFEESTPIQEKAIPIILENKDLIAVAQTGTGKTAAFLLPILDKLSEGKHIP-- 70
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCS-RDVKCVDISEQVDVSVQEPLLVERPDIVV 148
+ +++SP++EL Q+ + ++ + S V S+ + Q+ L ++V+
Sbjct: 71 DKVNCIIMSPTRELAQQIDQQMEGFSYFLSVSSVAIYGGSDGIAFEQQKRGLTMGAEVVI 130
Query: 149 ATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
ATP R L+HLK +DL S ++ I+DEAD + G+ DD+ + ++LPK Q I+ SAT
Sbjct: 131 ATPGRLLSHLKLGYVDL-SEVKHFILDEADRMLDMGFFDDIMQIAQYLPKERQTIMFSAT 189
Query: 209 LSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGK 268
+ + + L IL NP +KL P ++ + E +K I+ L + + K
Sbjct: 190 MPDKIQKLAQNILHNPEEIKL--AVSKPAEKILQAAYVCYEGQKLNIINDLFSKSKSE-K 246
Query: 269 TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL 328
+++F ++ K ++ L++ + ++S+L K R + F G D+++ +D
Sbjct: 247 SLVFASSKAKVKEVARALKKMDLKVGEIHSDLNQKTREEMLQNFKAGNIDILVGTDI--- 303
Query: 329 ETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGT 388
++RGID + VIN+D P D + Y+HR GRTAR N G
Sbjct: 304 --------------------IARGIDVDDIRLVINYDVPNDSEDYVHRIGRTARANNDGV 343
Query: 389 ALSFVSLREQ 398
A++FV+ ++Q
Sbjct: 344 AITFVNTKDQ 353
>gi|171318169|ref|ZP_02907335.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MEX-5]
gi|171096637|gb|EDT41526.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MEX-5]
Length = 571
Score = 177 bits (450), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 117/386 (30%), Positives = 200/386 (51%), Gaps = 35/386 (9%)
Query: 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIIN 82
F L L+AIA+ G+ PT IQ +AIP++L +DV+ A+TG+GKT +F++P+IQ+++
Sbjct: 90 FGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQRLLP 149
Query: 83 LKQTAQV---QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL 139
T+ +AL+L+P++EL +Q+ N+ S ++ + VD++ Q
Sbjct: 150 QASTSASPARHPVRALILTPTRELADQVAANVHAYAKHTS--LRSAVVFGGVDMNPQMAE 207
Query: 140 LVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199
L +I++ATP R L H++ KT +L ++I+++DEAD + G+ D++ +L LPK
Sbjct: 208 LRRGVEILIATPGRLLDHVQQKTANL-GQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 266
Query: 200 YQAILASATLSEDVLSLKHLILRNPVILKL--EEPAIAPVSQLAHYHILAQEDEKATILY 257
Q +L SAT S ++ L LRNP +++ A V+Q+ + +A+ D+ + ++
Sbjct: 267 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYD--VAEGDKHSAVVQ 324
Query: 258 TLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLY 317
L L Q I+F N+ +L LE+ + ++ + R A+ F +G
Sbjct: 325 LLRDRGLKQ--VIVFCNSKIGASRLARNLERDGVVASAIHGDKSQLERMQALDAFKRGEI 382
Query: 318 DVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRA 377
+ ++A+D A RG+D + VINFD P + + Y+HR
Sbjct: 383 EALVATDVAA-----------------------RGLDIVELPAVINFDLPFNAEDYVHRI 419
Query: 378 GRTARGKNQGTALSFVSLREQDLMND 403
GRT R G ALS S E+ + D
Sbjct: 420 GRTGRAGATGDALSLCSPNERKQLAD 445
>gi|323340095|ref|ZP_08080360.1| ATP-dependent RNA helicase DeaD [Lactobacillus ruminis ATCC 25644]
gi|323092472|gb|EFZ35079.1| ATP-dependent RNA helicase DeaD [Lactobacillus ruminis ATCC 25644]
Length = 506
Score = 177 bits (450), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 112/372 (30%), Positives = 201/372 (54%), Gaps = 33/372 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AI + G+ E T IQE IPL+L DV+ +A+TG+GKT AF +P++Q +++K+
Sbjct: 22 LKAIKRSGFEEATPIQEATIPLVLAGIDVIGQAQTGTGKTAAFGLPILQH-VDVKE---- 76
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ +A+V+SP++EL Q + + L V+ V D+ Q LL P I+V
Sbjct: 77 EHIQAIVVSPTRELAIQTQEELYRLGKDKRAKVQVV--YGGADIRRQIKLLKHVPQILVG 134
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H+ KT+DL S ++ +++DEAD + G+ +D++A++K +P+ Q +L SAT+
Sbjct: 135 TPGRLLDHINRKTVDL-SHVKTLVLDEADEMLDMGFLEDIEAIIKNVPEERQTLLFSATM 193
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+ + S+ + P ++K++ + + Y + A+E EK I+ +L + + T
Sbjct: 194 PKAIRSIGEKFMHEPQVVKIKAKELT-TDLVDQYFVKAREYEKFDIMTRILDVQAPE-LT 251
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L LE + ++ +L + R + + +F +G D+++A+D A
Sbjct: 252 IVFGRTKRRVDELSKGLEARGYNAAGIHGDLTQQRRMNILKKFKEGRLDILVATDVAA-- 309
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
RG+D V++V N+D P D + Y+HR GRT R + G +
Sbjct: 310 ---------------------RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGHHGIS 348
Query: 390 LSFVSLREQDLM 401
++FV+ E + +
Sbjct: 349 VTFVTPNEMEYL 360
>gi|268318827|ref|YP_003292483.1| DEAD-box ATP-dependent RNA helicase [Lactobacillus johnsonii
FI9785]
gi|262397202|emb|CAX66216.1| DEAD-box ATP-dependent RNA helicase [Lactobacillus johnsonii
FI9785]
Length = 484
Score = 177 bits (450), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 119/377 (31%), Positives = 198/377 (52%), Gaps = 43/377 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINL-KQTAQ 88
L+AI + G+ E T IQE+ IPL+L+ KDV+ +A+TG+GKT AF +P++Q NL KQ
Sbjct: 13 LKAIKRSGFEEATPIQEKTIPLVLEGKDVIGQAQTGTGKTAAFGLPILQ---NLDKQHDS 69
Query: 89 VQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCV--DISEQVDVSVQEPLLVERPDI 146
+Q A+++ P++EL Q QE + RD K + D+ Q L + P I
Sbjct: 70 IQ---AIIIEPTRELAIQ----TQEELFRLGRDEKARVQVVYGGADIRRQIRALKQTPAI 122
Query: 147 VVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
+V TP R L HLK T+D+ S ++ +++DEAD + G+ D++++LK+ +Q +L S
Sbjct: 123 LVGTPGRLLDHLKRGTIDI-SKIKTIVLDEADEMLDMGFIQDIESILKYASSKHQTLLFS 181
Query: 207 ATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQ 266
AT+ + +L + + +P I+K++ + + + Y + A+E+EK IL L+ VQ
Sbjct: 182 ATMPKPILRIGEKFMNDPEIVKIKGKELT-ANLIDQYFVRAKENEKFDILCRLID---VQ 237
Query: 267 GK--TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
+IF T + +L L+ + ++ +L R + +F +G D+++A+D
Sbjct: 238 NPDLAVIFGRTKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDILVATD 297
Query: 325 EKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384
A RG+D VS+V N+D P D Y+HR GRT R
Sbjct: 298 VAA-----------------------RGLDISGVSHVYNYDIPQDPDSYVHRIGRTGRAG 334
Query: 385 NQGTALSFVSLREQDLM 401
G +++FV+ E M
Sbjct: 335 QNGMSVTFVTPNEIGYM 351
>gi|420468314|ref|ZP_14967056.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-10]
gi|393087995|gb|EJB88647.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-10]
Length = 492
Score = 177 bits (450), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPK-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDV---- 316
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 317 -------------------ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|425433062|ref|ZP_18813601.1| putative DEAD-box ATP-dependent RNA helicase CshA [Helicobacter
pylori GAM100Ai]
gi|410714366|gb|EKQ71841.1| putative DEAD-box ATP-dependent RNA helicase CshA [Helicobacter
pylori GAM100Ai]
Length = 491
Score = 177 bits (450), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 191/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPE-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F+ T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFMRTKKEADELHQFLVSKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|94265120|ref|ZP_01288885.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium
MLMS-1]
gi|93454407|gb|EAT04705.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium
MLMS-1]
Length = 369
Score = 177 bits (450), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 107/362 (29%), Positives = 186/362 (51%), Gaps = 33/362 (9%)
Query: 33 IAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQET 92
IA G+ PT IQ +AIP I + +D++ A+TG+GKT AF +P++QK+
Sbjct: 16 IAACGYQAPTPIQTQAIPEIRRGRDIMGLAQTGTGKTAAFVLPLLQKL----SAGPRGRV 71
Query: 93 KALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPA 152
+A++++P++EL Q+H NI EL + ++ V + V Q +I+VA P
Sbjct: 72 RAVIVAPTRELAEQIHVNIGELGRQTG--IRSVAVYGGVSKFGQLKAFKAGVEIIVACPG 129
Query: 153 RALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSED 212
R L HL ++ ++L ++E++++DEAD++F G+ +K +LK+LP Q +L SAT+ +
Sbjct: 130 RLLDHLDSRDVNL-GAVEMLVLDEADMMFDMGFMPAIKKLLKYLPAKRQNLLFSATMPAE 188
Query: 213 VLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTIIF 272
+ L IL++P +++ P + +AH ++ K +L +++ + ++F
Sbjct: 189 IRHLADSILKDPARVQINH--TQPTALVAHKLYRVEKQGKGALLKQVMQESAFS-SALVF 245
Query: 273 VNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQ 332
T KL L LE+ L + R A+ F QG +++++A+D A
Sbjct: 246 TRTKHAAKKLALNLEKAGHRAVALQGNMSQNKRKAAMEGFKQGRFNIMVATDIAA----- 300
Query: 333 INSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSF 392
RGID +S+VIN+D P ++ Y HR GRT R + G A +F
Sbjct: 301 ------------------RGIDVAGISHVINYDMPATVEAYTHRIGRTGRAERNGEAYTF 342
Query: 393 VS 394
+
Sbjct: 343 AT 344
>gi|15611302|ref|NP_222953.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori J99]
gi|4154758|gb|AAD05818.1| ATP-DEPENDENT RNA HELICASE DEAD [Helicobacter pylori J99]
Length = 491
Score = 177 bits (450), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
KALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 ---KALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPE-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V ++ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFSYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|392954107|ref|ZP_10319659.1| DEAD/DEAH box helicase domain protein [Hydrocarboniphaga effusa
AP103]
gi|391858006|gb|EIT68536.1| DEAD/DEAH box helicase domain protein [Hydrocarboniphaga effusa
AP103]
Length = 605
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 123/377 (32%), Positives = 198/377 (52%), Gaps = 39/377 (10%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+A G+ +PT IQ +AIP+ILQ D+L A+TG+GKT AF +P++ ++I +
Sbjct: 13 LRAVAAEGYTQPTPIQAQAIPVILQGGDLLAAAQTGTGKTAAFTLPLLHRLIQRRAQGVS 72
Query: 90 QETK---ALVLSPSKELCNQLHKNIQ----ELTMKCSRDVKCVDISEQVDVSVQEPLLVE 142
K ALVL+P++EL Q+ ++++ L +K + V I+ Q+DV L
Sbjct: 73 GAPKKPLALVLTPTRELAAQVAQSVRTYGGHLPLKTTVIFGGVSINPQIDV------LRH 126
Query: 143 RPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQA 202
DI+VATP R L H+ +T+DL S++E++I+DEAD + G+ D+K V+ LPK Q
Sbjct: 127 GVDILVATPGRLLDHVGQRTIDL-SAVEMLILDEADRMLDMGFIHDIKRVIATLPKQRQN 185
Query: 203 ILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKL 262
++ SAT S+D+ L H L NP + + P A + + + K+ +L L+
Sbjct: 186 LMFSATFSDDIRKLAHGFLNNPATIDI-APRNAAADTVEQRVVYVDKGRKSELLSYLISS 244
Query: 263 NLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIA 322
Q +T++F T +L L+++ IS+ L+ AR A+ +F G ++A
Sbjct: 245 GNWQ-QTLVFTRTKHGANRLVEKLQKWNISSAALHGNKSQNARTKALAEFKAGTVRTLVA 303
Query: 323 SDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTAR 382
+D A RG+D + + +V+NF+ P + Y+HR GRT R
Sbjct: 304 TDIAA-----------------------RGLDIEQLPHVVNFELPNVPEDYVHRIGRTGR 340
Query: 383 GKNQGTALSFVSLREQD 399
G A+S VS E D
Sbjct: 341 AGAGGEAISLVSADEMD 357
>gi|407688996|ref|YP_006804169.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii str.
'Balearic Sea AD45']
gi|407292376|gb|AFT96688.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii str.
'Balearic Sea AD45']
Length = 483
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 117/374 (31%), Positives = 189/374 (50%), Gaps = 29/374 (7%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AI K G+ P+ IQE+AIP +LQ KDVL A+TG+GKT F +P++Q+++ Q
Sbjct: 13 LKAIEKRGFSTPSPIQEKAIPEVLQGKDVLAAAQTGTGKTAGFGLPILQRLME-GQPVSG 71
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+AL+L+P++EL Q+ ++I+ + +K + V ++ Q L + D+++A
Sbjct: 72 NNVRALILTPTRELAAQVEESIRAFSEFL--PLKTAVVFGGVGINPQMMKLRKGVDVLIA 129
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L + + S LE++++DEAD + G+ D+K VLK LP+ Q++L SAT
Sbjct: 130 TPGRLLDLYQQNAVKF-SQLEVLVLDEADRMLDMGFIHDIKRVLKLLPQERQSLLFSATF 188
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
S+++ +L I RNPV + PA V + + + + +K T L L+K + +
Sbjct: 189 SDEITALAKTITRNPVSIST-APANTTVEAVQQHLVTIDKSKKTTALICLIKQQKWE-QV 246
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
++F T ++ L + KI + ++ AR A+ F G V++A+D A
Sbjct: 247 LVFSRTKHGANRIAEKLTRSKIPSAAIHGNKSQGARTKALTDFKNGAIKVLVATDIAA-- 304
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
RGID + V+N D P Y+HR GRT R G A
Sbjct: 305 ---------------------RGIDISELPIVVNLDLPNTAADYVHRIGRTGRAGASGQA 343
Query: 390 LSFVSLREQDLMND 403
SFV E + D
Sbjct: 344 WSFVCAEELQNLKD 357
>gi|401624697|gb|EJS42747.1| drs1p [Saccharomyces arboricola H-6]
Length = 747
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 115/384 (29%), Positives = 203/384 (52%), Gaps = 35/384 (9%)
Query: 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII 81
T +L L+ +A LG+++P+ IQ IP+ L KD++ A TGSGKT AF IP+I+++
Sbjct: 230 TLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERL- 288
Query: 82 NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQV---DVSVQEP 138
L + A++ T+ +VL P++EL Q + ++ + +R + + V ++ QE
Sbjct: 289 -LYKPAKIAATRVIVLLPTRELAIQ----VADVGKQIARFLPGITFGLAVGGLNLRQQEQ 343
Query: 139 LLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPK 198
LL RPDIV+ATP R + H++ S+EI+++DEAD + G++D++ ++ LP
Sbjct: 344 LLKTRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELSEIMGLLPS 403
Query: 199 LYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDE-KATILY 257
Q +L SAT++ + SL L L+ PV + ++ P A + + + D K ++L+
Sbjct: 404 NRQNLLFSATMNSKIKSLVSLSLKRPVRIMIDPPKQAAARLTQEFVRIRKRDHLKPSLLF 463
Query: 258 TLL-KLN-LVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQG 315
L+ KL+ + Q + ++FV + ++L++ + + L+ L + R +V +F
Sbjct: 464 NLIRKLDPMGQKRIVVFVARKETAHRLRIVMGLLGMGVGELHGSLTQEQRLDSVNKF--- 520
Query: 316 LYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIH 375
K LE P + T+ SRG+D + V+N+D P + Y+H
Sbjct: 521 ----------KNLEVPVLVCTDL----------ASRGLDIPKIEVVVNYDMPKSYEIYLH 560
Query: 376 RAGRTARGKNQGTALSFVSLREQD 399
R GRTAR +G +++ V QD
Sbjct: 561 RVGRTARAGREGRSVTLVGESSQD 584
>gi|417990847|ref|ZP_12631309.1| cold-shock DEAD-box protein A [Lactobacillus casei A2-362]
gi|410533506|gb|EKQ08184.1| cold-shock DEAD-box protein A [Lactobacillus casei A2-362]
Length = 502
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 113/373 (30%), Positives = 194/373 (52%), Gaps = 43/373 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AIA+ G+ E T IQ IPL+L KDV+ +A+TG+GKT AF +P++Q I ++ Q
Sbjct: 13 LKAIAQSGFEEATPIQAETIPLVLAGKDVIGQAQTGTGKTAAFGLPILQNIDKADRSIQ- 71
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
ALV+SP++EL Q + + L + +K + D+ Q L E P IVV
Sbjct: 72 ----ALVISPTRELAIQTQEELYRLGQ--DKKIKVQAVYGGADIRRQIRQLSEHPQIVVG 125
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H+ TL L+ +L+++++DEAD + G+ DD++ +++ +P Q +L SAT+
Sbjct: 126 TPGRILDHIGRHTLKLQ-NLKVLVLDEADEMLDMGFIDDIEKIVEQMPTARQTLLFSATI 184
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLL-----KLNL 264
++ L + + PV +K++ + + Y++ A++ EK ++ L L L
Sbjct: 185 PASIMRLTNKFMHEPVTVKIKAKELT-ADTVEQYYVRAKDYEKFDVMTRLFDVQDPDLAL 243
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
+ G+T V+ + + K + Y + ++ +L + R + QF G D ++A+D
Sbjct: 244 IFGRTKRRVDELTRGLKARGYRAEG------IHGDLTQQKRMSVLRQFKSGQLDFLVATD 297
Query: 325 EKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384
A RG+D V++V N+D P D Y+HR GRT R
Sbjct: 298 VAA-----------------------RGLDISGVTHVYNYDIPQDPDPYVHRIGRTGRAG 334
Query: 385 NQGTALSFVSLRE 397
++G +++FV+ E
Sbjct: 335 HKGVSVTFVTPNE 347
>gi|407685080|ref|YP_006800254.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii str.
'English Channel 673']
gi|407246691|gb|AFT75877.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii str.
'English Channel 673']
Length = 483
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 117/374 (31%), Positives = 189/374 (50%), Gaps = 29/374 (7%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AI K G+ P+ IQE+AIP +LQ KDVL A+TG+GKT F +P++Q+++ Q
Sbjct: 13 LKAIEKRGFSTPSPIQEKAIPEVLQGKDVLAAAQTGTGKTAGFGLPILQRLME-GQPVSG 71
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+AL+L+P++EL Q+ ++I+ + +K + V ++ Q L + D+++A
Sbjct: 72 NNVRALILTPTRELAAQVEESIRAFSEFL--PLKTAVVFGGVGINPQMMKLRKGVDVLIA 129
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L + + S LE++++DEAD + G+ D+K VLK LP+ Q++L SAT
Sbjct: 130 TPGRLLDLYQQNAVKF-SQLEVLVLDEADRMLDMGFIHDIKRVLKLLPQERQSLLFSATF 188
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
S+++ +L I RNPV + PA V + + + + +K T L L+K + +
Sbjct: 189 SDEITALAKTITRNPVSIST-APANTTVEAVQQHLVTIDKSKKTTALICLIKQQKWE-QV 246
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
++F T ++ L + KI + ++ AR A+ F G V++A+D A
Sbjct: 247 LVFSRTKHGANRIAEKLTRSKIPSAAIHGNKSQGARTKALADFKNGAIKVLVATDIAA-- 304
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
RGID + V+N D P Y+HR GRT R G A
Sbjct: 305 ---------------------RGIDISELPIVVNLDLPNTAADYVHRIGRTGRAGASGQA 343
Query: 390 LSFVSLREQDLMND 403
SFV E + D
Sbjct: 344 WSFVCAEELQNLKD 357
>gi|420449759|ref|ZP_14948625.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-45]
gi|393069076|gb|EJB69874.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-45]
Length = 492
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPK-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDV---- 316
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 317 -------------------ASRGLDISGVSHVFNYHLPLNTENYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|423107485|ref|ZP_17095180.1| ATP-dependent RNA helicase rhlE [Klebsiella oxytoca 10-5243]
gi|376388510|gb|EHT01205.1| ATP-dependent RNA helicase rhlE [Klebsiella oxytoca 10-5243]
Length = 454
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 117/379 (30%), Positives = 202/379 (53%), Gaps = 37/379 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+A+ G++EPT IQ++AIP +LQ +D++ A+TG+GKT F +P++Q +I+ + A+
Sbjct: 13 LRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQHLIHKEPHAKG 72
Query: 90 QE-TKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
+ +AL+L+P++EL Q+ +N+++ + +V+ + + V ++ Q L DI+V
Sbjct: 73 RRPVRALILTPTRELAAQIGENVRDYSKYL--NVRSLVVFGGVSINPQMMKLRSGVDILV 130
Query: 149 ATPARA--LAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
ATP R L H A +LD +E++++DEAD + G+ D++ VL LP Q +L S
Sbjct: 131 ATPGRLLDLEHQNAVSLD---KVEVLVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFS 187
Query: 207 ATLSEDVLSLKHLILRNPVILKLEEPAIAP--VSQLAHYHILAQEDEKATILYTLLKLNL 264
AT S+D+ SL +L NP+ +++ A VSQL H+ + K +L ++
Sbjct: 188 ATFSDDIKSLAEKLLHNPLEIEVARRNTASEQVSQLVHF---VDKKRKRELLSQMIGEGN 244
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
Q + ++F T L L + I + ++ AR A+ F G V++A+D
Sbjct: 245 WQ-QVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGGIRVLVATD 303
Query: 325 EKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384
A RG+D + + +V+N++ P + Y+HR GRT R
Sbjct: 304 IAA-----------------------RGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAA 340
Query: 385 NQGTALSFVSLREQDLMND 403
G ALS V + E L++D
Sbjct: 341 ATGEALSLVCVDEHKLLHD 359
>gi|374336577|ref|YP_005093264.1| DEAD/DEAH box helicase [Oceanimonas sp. GK1]
gi|372986264|gb|AEY02514.1| DEAD/DEAH box helicase [Oceanimonas sp. GK1]
Length = 458
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 111/375 (29%), Positives = 195/375 (52%), Gaps = 31/375 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
+QAI + G+ +PT IQ++AIPL+L+ D+L A+TG+GKT F +PM+Q++ K
Sbjct: 13 VQAIHECGYTQPTPIQQQAIPLVLKGGDLLAGAQTGTGKTAGFGLPMLQRLSETKARPLA 72
Query: 90 QE---TKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDI 146
+ALVL+P++EL Q+ +N++ D++ + + V ++ Q L + DI
Sbjct: 73 NGRAPVRALVLTPTRELAAQVEENLRAYAKHT--DLRTLVMFGGVSINPQMKALGRKVDI 130
Query: 147 VVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
VVATP R L H+ +++DL S +E++++DEAD + G+ D++ +L LPK Q +L S
Sbjct: 131 VVATPGRLLDHVSQRSIDL-SRVEMLVLDEADRMLDMGFIRDIRRILALLPKQRQNLLFS 189
Query: 207 ATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQ 266
AT S+++ +L +L P +++ + + + + ++A + Y + N Q
Sbjct: 190 ATFSDEIKTLAEDLLHQPEHIEVARRNATAETISQRFFEVDKGRKRALLSYHIGHHNWRQ 249
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
++F T +L L++ + ++ AR A+ +F G V++A+D
Sbjct: 250 --VLVFTRTKHGANRLAEQLDKDGLPAMAIHGNKSQGARTKALSEFKSGGIRVLVATDIA 307
Query: 327 ALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQ 386
A RGID + +V+N++ P + Y+HR GRT R +
Sbjct: 308 A-----------------------RGIDISELPHVVNYELPNVAEDYVHRIGRTGRAGSN 344
Query: 387 GTALSFVSLREQDLM 401
G ALS VS E+ L+
Sbjct: 345 GEALSLVSAEEKPLL 359
>gi|269838391|ref|YP_003320619.1| DEAD/DEAH box helicase [Sphaerobacter thermophilus DSM 20745]
gi|269787654|gb|ACZ39797.1| DEAD/DEAH box helicase domain protein [Sphaerobacter thermophilus
DSM 20745]
Length = 526
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 114/374 (30%), Positives = 194/374 (51%), Gaps = 33/374 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AI +G+ EPT IQ AIPL+L +D++ +A+TG+GKT AFA+P+I+++
Sbjct: 14 LKAIDAVGFEEPTPIQREAIPLLLSGRDLIAQAQTGTGKTAAFALPIIERL-----QPNG 68
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ +ALVL+P++EL Q+ + +L RD + + + + Q L ++VV
Sbjct: 69 RRPQALVLAPTRELAVQVAQTFHQLGR--VRDTRVLAVYGGQPIERQLRALRHPVEVVVG 126
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + H++ +TLDL S++ V+IDEAD + G+ +D++ +L +P Q L SAT+
Sbjct: 127 TPGRVMDHIRRETLDL-SNVSTVVIDEADEMLDMGFIEDVEWILDHVPAERQTALFSATI 185
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+ V +L LR+P + + EP V Q+ ++ + K L +L +
Sbjct: 186 PDRVAALARRYLRDPARVAV-EPERVTVPQIEQTYVEVVQRAKVEALTRILDME-TPPSA 243
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
IIF T +L L+ + L+ +L R + +F G +++IA+D A
Sbjct: 244 IIFCRTKRGVDELTQQLQSLGYAAEALHGDLSQVQRDRVMARFRSGQAELLIATDVAA-- 301
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
RG+D + +++VIN+D P D + Y+HR GRT R G A
Sbjct: 302 ---------------------RGLDVEGITHVINYDIPGDPESYVHRIGRTGRAGRAGAA 340
Query: 390 LSFVSLREQDLMND 403
++ V+ RE+ L+ +
Sbjct: 341 ITLVTPRERRLLRE 354
>gi|375259807|ref|YP_005018977.1| ATP-dependent RNA helicase RhlE [Klebsiella oxytoca KCTC 1686]
gi|397656870|ref|YP_006497572.1| ATP-dependent RNA helicase RhlE [Klebsiella oxytoca E718]
gi|402843597|ref|ZP_10891991.1| ATP-dependent RNA helicase RhlE [Klebsiella sp. OBRC7]
gi|423102058|ref|ZP_17089760.1| ATP-dependent RNA helicase rhlE [Klebsiella oxytoca 10-5242]
gi|365909285|gb|AEX04738.1| ATP-dependent RNA helicase RhlE [Klebsiella oxytoca KCTC 1686]
gi|376389954|gb|EHT02641.1| ATP-dependent RNA helicase rhlE [Klebsiella oxytoca 10-5242]
gi|394345401|gb|AFN31522.1| ATP-dependent RNA helicase RhlE [Klebsiella oxytoca E718]
gi|402276707|gb|EJU25808.1| ATP-dependent RNA helicase RhlE [Klebsiella sp. OBRC7]
Length = 449
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 117/379 (30%), Positives = 201/379 (53%), Gaps = 37/379 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+A+ G++EPT IQ++AIP +LQ +D++ A+TG+GKT F +P++Q +I + A+
Sbjct: 13 LRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQHLIQKEPHAKG 72
Query: 90 QE-TKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
+ +AL+L+P++EL Q+ +N+++ + +V+ + + V ++ Q L DI+V
Sbjct: 73 RRPVRALILTPTRELAAQIGENVRDYSKYL--NVRSLVVFGGVSINPQMMKLRSGVDILV 130
Query: 149 ATPARA--LAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
ATP R L H A +LD +E++++DEAD + G+ D++ VL LP Q +L S
Sbjct: 131 ATPGRLLDLEHQNAVSLD---KVEVLVLDEADRMLDMGFIHDIRRVLAKLPARRQNLLFS 187
Query: 207 ATLSEDVLSLKHLILRNPVILKLEEPAIAP--VSQLAHYHILAQEDEKATILYTLLKLNL 264
AT S+D+ SL +L NP+ +++ A VSQL H+ + K +L ++
Sbjct: 188 ATFSDDIKSLAEKLLHNPLEIEVARRNTASEQVSQLVHF---VDKKRKRELLSQMIGEGN 244
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
Q + ++F T L L + I + ++ AR A+ F G V++A+D
Sbjct: 245 WQ-QVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGGIRVLVATD 303
Query: 325 EKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384
A RG+D + + +V+N++ P + Y+HR GRT R
Sbjct: 304 IAA-----------------------RGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAA 340
Query: 385 NQGTALSFVSLREQDLMND 403
G ALS V + E L++D
Sbjct: 341 ATGEALSLVCVDEHKLLHD 359
>gi|317047085|ref|YP_004114733.1| DEAD/DEAH box helicase [Pantoea sp. At-9b]
gi|316948702|gb|ADU68177.1| DEAD/DEAH box helicase domain protein [Pantoea sp. At-9b]
Length = 459
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 117/363 (32%), Positives = 185/363 (50%), Gaps = 33/363 (9%)
Query: 35 KLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKA 94
++G+ T IQ A+P ILQ +DV +A+TGSGKT AF I ++Q+I N + T+A
Sbjct: 20 EMGFDAMTPIQAAALPAILQGRDVRAQAKTGSGKTAAFGIGLLQRIDNSQ-----FHTQA 74
Query: 95 LVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARA 154
LVL P++EL +Q+ +++L + +R++K + + +S Q LV P IVV TP R
Sbjct: 75 LVLCPTRELADQVSNVLRQLA-RFTRNIKILTLCGGQPMSAQRDSLVHAPHIVVGTPGRI 133
Query: 155 LAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSEDVL 214
L HLK LDL + L+ +++DEAD + G+ DDM+A++ F P Q +L SAT + +
Sbjct: 134 LDHLKRDNLDL-NQLQTLVLDEADRMLEMGFRDDMEAIIGFTPAARQTLLFSATWPDTIA 192
Query: 215 SLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTIIFVN 274
SL R+ + + E A P + I E+ +L LL ++F N
Sbjct: 193 SLSERYQRDALAVATETEAELPA--IEQRFIEVSASERTNLLSALLSQQQPT-SCVVFCN 249
Query: 275 TVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQIN 334
T +C + L +IS L+ +L + R + +F G V+IA+D A
Sbjct: 250 TKRECDDIAAALNDRQISALALHGDLEQRDRERVLIRFANGSIRVLIATDVAA------- 302
Query: 335 STNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVS 394
RG+D + ++ V+N+ D + ++HR GRT R G A+SFV+
Sbjct: 303 ----------------RGLDIKSLALVVNYHLAWDPEVHLHRIGRTGRAGESGLAVSFVA 346
Query: 395 LRE 397
E
Sbjct: 347 ADE 349
>gi|365156794|ref|ZP_09353090.1| hypothetical protein HMPREF1015_01991 [Bacillus smithii 7_3_47FAA]
gi|363626851|gb|EHL77816.1| hypothetical protein HMPREF1015_01991 [Bacillus smithii 7_3_47FAA]
Length = 473
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 112/379 (29%), Positives = 201/379 (53%), Gaps = 43/379 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L++I +LG+ E T IQ IP L KD++ +A+TG+GKT AF IP+++KI +
Sbjct: 14 LKSIDQLGFEEATPIQAATIPKSLDGKDLIGQAQTGTGKTAAFGIPLMEKI-----DTKN 68
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ++++P++EL Q+ + + ++ + V+ + + D+ Q L ++P ++V
Sbjct: 69 HHIQGMIIAPTRELAIQVSEELYKIG--YHKRVRILAVYGGQDIQRQIRALKKQPHVIVG 126
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H+ +TL L L +++DEAD + + G+ D++ +L +PK Q +L SAT+
Sbjct: 127 TPGRILDHINRQTLKL-DHLHTLVLDEADEMLNMGFIQDIETILSHMPKERQTLLFSATM 185
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLL-----KLNL 264
E + ++ ++NP +++++ + V Q+ Y I QE EK +L LL +L +
Sbjct: 186 PEPIRAIAEKFMKNPELVQVKAKEMT-VPQIEQYFIKIQEREKFDVLSRLLDVQSPELAI 244
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
V G+T V+ + + L+ Y S ++ +L R + + +F +G DV++A+D
Sbjct: 245 VFGRTKRRVDELTRALTLRGY------SAEGIHGDLSQMKRLNVLKKFKEGKVDVLVATD 298
Query: 325 EKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384
A RG+D V++V N+D P D + Y+HR GRT R
Sbjct: 299 VAA-----------------------RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG 335
Query: 385 NQGTALSFVSLREQDLMND 403
+G A++FVS RE + +
Sbjct: 336 KEGIAITFVSPREMGYLRE 354
>gi|207091782|ref|ZP_03239569.1| DEAD-box ATP dependent DNA helicase [Helicobacter pylori
HPKX_438_AG0C1]
Length = 492
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSDITNTDITQRFYVI-NEHERAEAIMRLLDTQAPK-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDV---- 316
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 317 -------------------ASRGLDIGGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|170725067|ref|YP_001759093.1| DEAD/DEAH box helicase [Shewanella woodyi ATCC 51908]
gi|169810414|gb|ACA84998.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
51908]
Length = 494
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 117/386 (30%), Positives = 196/386 (50%), Gaps = 30/386 (7%)
Query: 19 LPFTFTLFCIP-LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMI 77
+ FT P L+A+A+ G+ P+ IQ +AIP +L+ KDV+ A+TG+GKT F +P++
Sbjct: 1 MSFTSLGLSAPILKAVAQKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLL 60
Query: 78 QKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQE 137
+ +++ + A ++ +ALVL+P++EL Q+ ++++ T + ++ I V + Q
Sbjct: 61 E-LLSRGKRAPAKQVRALVLTPTRELAAQVAESVE--TYGKNLPLRSAVIFGGVGIGPQI 117
Query: 138 PLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLP 197
L + DI+VATP R L + K LE++++DEAD + G+ D+K +LK LP
Sbjct: 118 SKLGKGVDILVATPGRLLDLYNQGAVSFK-QLEVLVLDEADRMLDMGFIHDIKKILKILP 176
Query: 198 KLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILY 257
Q ++ SAT S+D+ +L ++ NPV + + P A + Y + +K L
Sbjct: 177 AKRQNLMFSATFSDDIRNLAKGLVNNPVEISV-TPRNATAKTVEQYIYPVDQKQKTAALI 235
Query: 258 TLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLY 317
L+K N + + ++F T ++ LE ++ ++ AR A+ F G
Sbjct: 236 HLVKQNEWK-QVLVFSRTKHGANRIAKNLEASGLTAAAIHGNKSQGARTKALANFKSGEV 294
Query: 318 DVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRA 377
V++A+D A RGID + NV+NFD P + Y+HR
Sbjct: 295 RVLVATDIAA-----------------------RGIDIDQLPNVVNFDLPNVPEDYVHRI 331
Query: 378 GRTARGKNQGTALSFVSLREQDLMND 403
GRT R G A+S VS E L+ D
Sbjct: 332 GRTGRAGANGQAVSLVSGDESKLLRD 357
>gi|417857754|ref|ZP_12502811.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens F2]
gi|338823758|gb|EGP57725.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens F2]
Length = 491
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 108/374 (28%), Positives = 189/374 (50%), Gaps = 27/374 (7%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
+ ++ +LG+ PT IQ +AIPL+L+ +D++ A+TG+GKT AF +P+I+ ++
Sbjct: 14 VASVTQLGYTTPTPIQAKAIPLLLEGRDLIGLAQTGTGKTAAFGLPIIEMLMKQADRPAN 73
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ T+ L+L+P++EL NQ+ N++ K ++ + ++ Q+ L + DI+VA
Sbjct: 74 RTTRTLILAPTRELVNQIGDNLRSFVKKTP--LRINQVVGGASINKQQLQLEKGTDILVA 131
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L + + L S + +++DEAD + G+ D++ + + +P Q +L SAT+
Sbjct: 132 TPGRLLDLIARNAISL-SKVTYLVLDEADQMLDLGFIHDLRKISRMVPAKRQTLLFSATM 190
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+ + L H L +PV +++ P A + H +A +++K +L L N G+
Sbjct: 191 PKAIADLSHSYLTDPVKVEVTPPGKAADKVEQYVHFVAGKNDKTDLLKKSLNEN-PDGRA 249
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F+ T KL +LE ++ R A+ F G V++A+D A
Sbjct: 250 IVFLRTKHGAEKLYKHLEHIGFKVASIHGNKSQGQRERALKGFKDGDIKVLVATDVAA-- 307
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
RGID V++V N+D P Y+HR GRTAR G A
Sbjct: 308 ---------------------RGIDIPAVTHVFNYDLPEVPDAYVHRIGRTARAGRDGIA 346
Query: 390 LSFVSLREQDLMND 403
++F + E L++D
Sbjct: 347 IAFCAPDETRLLHD 360
>gi|107023254|ref|YP_621581.1| DEAD/DEAH box helicase [Burkholderia cenocepacia AU 1054]
gi|116690337|ref|YP_835960.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
cenocepacia HI2424]
gi|170733675|ref|YP_001765622.1| DEAD/DEAH box helicase [Burkholderia cenocepacia MC0-3]
gi|105893443|gb|ABF76608.1| DEAD/DEAH box helicase-like protein [Burkholderia cenocepacia AU
1054]
gi|116648426|gb|ABK09067.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
HI2424]
gi|169816917|gb|ACA91500.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
MC0-3]
Length = 520
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 117/390 (30%), Positives = 200/390 (51%), Gaps = 38/390 (9%)
Query: 22 TFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQ 78
TF F + L+AI + G+ PT IQ +AIP++L +DV+ A+TG+GKT +F++P+IQ
Sbjct: 34 TFDQFGLAPDILKAIVEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 93
Query: 79 KII---NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSV 135
+++ N + +AL+L+P++EL +Q+ N+ ++ + VD++
Sbjct: 94 RLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTP--LRSAVVFGGVDMNP 151
Query: 136 QEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKF 195
Q L +I++ATP R L H++ KT +L ++I+++DEAD + G+ D++ +L
Sbjct: 152 QSAELRRGVEILIATPGRLLDHVQQKTANL-GQVQILVLDEADRMLDMGFLPDLQRILNL 210
Query: 196 LPKLYQAILASATLSEDVLSLKHLILRNPVILKL--EEPAIAPVSQLAHYHILAQEDEKA 253
LPK Q +L SAT S ++ L LRNP +++ A V+Q+ + +A+ D++A
Sbjct: 211 LPKERQTLLFSATFSGEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYD--VAEGDKQA 268
Query: 254 TILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFN 313
++ L L Q I+F N+ +L LE+ + ++ + R A+ F
Sbjct: 269 AVVQLLRDRGLKQ--VIVFCNSKIGASRLARNLERDGVVASAIHGDKTQIERMQALDAFK 326
Query: 314 QGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCY 373
+G + ++A+D A RG+D + VINFD P + Y
Sbjct: 327 RGEIEALVATDVAA-----------------------RGLDIAELPAVINFDLPFSAEDY 363
Query: 374 IHRAGRTARGKNQGTALSFVSLREQDLMND 403
+HR GRT R G ALS S E+ + D
Sbjct: 364 VHRIGRTGRAGATGDALSLCSPNERKQLAD 393
>gi|227888879|ref|ZP_04006684.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus johnsonii
ATCC 33200]
gi|227850572|gb|EEJ60658.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus johnsonii
ATCC 33200]
Length = 484
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 119/377 (31%), Positives = 198/377 (52%), Gaps = 43/377 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINL-KQTAQ 88
L+AI + G+ E T IQE+ IPL+L+ KDV+ +A+TG+GKT AF +P++Q NL KQ
Sbjct: 13 LKAIKRSGFEEATPIQEKTIPLVLEGKDVIGQAQTGTGKTAAFGLPILQ---NLDKQHDS 69
Query: 89 VQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCV--DISEQVDVSVQEPLLVERPDI 146
+Q A+++ P++EL Q QE + RD K + D+ Q L + P I
Sbjct: 70 IQ---AIIIEPTRELAIQ----TQEELFRLGRDEKARVQVVYGGADIRRQIRALKQTPAI 122
Query: 147 VVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
+V TP R L HLK T+D+ S ++ +++DEAD + G+ D++++LK+ +Q +L S
Sbjct: 123 LVGTPGRLLDHLKRGTIDI-SKVKTIVLDEADEMLDMGFIQDIESILKYASSKHQTLLFS 181
Query: 207 ATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQ 266
AT+ + +L + + +P I+K++ + + + Y + A+E+EK IL L+ VQ
Sbjct: 182 ATMPKPILRIGEKFMNDPEIVKIKGKELT-ANLIDQYFVRAKENEKFDILCRLID---VQ 237
Query: 267 GK--TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
+IF T + +L L+ + ++ +L R + +F +G D+++A+D
Sbjct: 238 NPDLAVIFGRTKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDILVATD 297
Query: 325 EKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384
A RG+D VS+V N+D P D Y+HR GRT R
Sbjct: 298 VAA-----------------------RGLDISGVSHVYNYDIPQDPDSYVHRIGRTGRAG 334
Query: 385 NQGTALSFVSLREQDLM 401
G +++FV+ E M
Sbjct: 335 QNGMSVTFVTPNEIGYM 351
>gi|351730076|ref|ZP_08947767.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax
radicis N35]
Length = 498
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 114/376 (30%), Positives = 202/376 (53%), Gaps = 31/376 (8%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV- 89
+A+A++G+ T IQE+AIP++L +DV+ A+TG+GKT AF++P++Q+++ + ++
Sbjct: 16 RAVAEMGYESMTPIQEQAIPVVLTGQDVMGAAQTGTGKTAAFSLPLLQRLLKHESSSTSP 75
Query: 90 --QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
+ALVL P++EL +Q+ + I L K ++ ++ + +D+ Q L + +++
Sbjct: 76 ARHPVRALVLLPTRELADQVAQQIA-LYAKYTK-LRSTVVFGGMDMKPQTIELKKGVEVL 133
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
VATP R L H++AK L + +E V++DEAD + G+ D++ +L +LPK +L SA
Sbjct: 134 VATPGRLLDHIEAKNAVL-NQVEYVVLDEADRMLDIGFLPDLQRILSYLPKQRTTLLFSA 192
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
T S ++ L L+NP+ +++ P S + A +D+K ++ +LK ++
Sbjct: 193 TFSPEIKRLASSYLQNPITIEVARPN-ETASTVEQRFYSANDDDKRRAIHQVLKTRGLK- 250
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
+ IFVN+ C +L LE+ + T L+ + R A+ F G D+++ +D A
Sbjct: 251 QAFIFVNSKLGCARLARSLEREGLKTTALHGDKSQDERLKALEAFKSGEVDLLVCTDVAA 310
Query: 328 LETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQG 387
RG+D + V V NFD P + + Y+HR GRT R G
Sbjct: 311 -----------------------RGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASG 347
Query: 388 TALSFVSLREQDLMND 403
A++ VS + L+ D
Sbjct: 348 LAVTLVSGSDARLVAD 363
>gi|193214029|ref|YP_001995228.1| DEAD/DEAH box helicase [Chloroherpeton thalassium ATCC 35110]
gi|193087506|gb|ACF12781.1| DEAD/DEAH box helicase domain protein [Chloroherpeton thalassium
ATCC 35110]
Length = 431
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 117/367 (31%), Positives = 198/367 (53%), Gaps = 37/367 (10%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+ +LG+ PT IQ AIP + KD+L A+TG+GKT AFA+P++ + + ++ +
Sbjct: 16 LRALKELGYETPTAIQAAAIPEAILGKDILATAQTGTGKTAAFALPILHR-LGENRSYDI 74
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ +AL+L+P++EL Q+ NI+ L + R ++ I V Q +L PDI+VA
Sbjct: 75 RAPRALILTPTRELALQIDNNIR-LYARYLR-LRTGVIMGGVPAHPQIKMLRRNPDILVA 132
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + + L ++ ++DEAD + G+ DD++ + P+ +Q +L SATL
Sbjct: 133 TPGRLIDLFDQGFIGL-DQIQTFVLDEADRMLDMGFIDDIRRIESLQPRDHQTLLFSATL 191
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLA----HYHILAQEDEKATILYTLLKLNLV 265
S ++ +L +LR PV ++ +APVS +A + +++ K +L+ L K N +
Sbjct: 192 SPEIEALASRMLREPVRIE-----VAPVSSVADNITQKVLFVEQNNKRELLHNLFKENDI 246
Query: 266 QGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE 325
+ + ++F T + + L + IS ++S +AR A+ F++G +V++A+D
Sbjct: 247 K-RALVFTRTKQRANHVAEQLIRLGISADAIHSSKSQRARQRALMLFDRGKINVLVATDI 305
Query: 326 KALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKN 385
A RGID +S+VIN++ P D + Y+HR GRTAR
Sbjct: 306 AA-----------------------RGIDVDGISHVINYELPDDPENYVHRIGRTARAGA 342
Query: 386 QGTALSF 392
GTALSF
Sbjct: 343 SGTALSF 349
>gi|165975989|ref|YP_001651582.1| cold-shock DEAD box protein-A [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|165876090|gb|ABY69138.1| cold-shock DEAD box protein-A [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
Length = 619
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 117/386 (30%), Positives = 193/386 (50%), Gaps = 35/386 (9%)
Query: 21 FTFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMI 77
TF +P L A+ +G++ P+ IQ+ IP +L +DVL A+TGSGKT AF++P++
Sbjct: 6 LTFADLGLPQSILDAVNDMGFVTPSPIQQETIPHLLAGRDVLGMAQTGSGKTAAFSLPLL 65
Query: 78 QKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQE 137
+I K+ Q+ LV++P++EL Q+ ++ T K + V V + +Q
Sbjct: 66 AQIDPTKRHPQM-----LVMAPTRELAIQVADACEQFT-KNMKGVNVVTVYGGQRYDIQL 119
Query: 138 PLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLP 197
L + +VV TP R L H++ TLDL S+L+ +++DEAD + G+ DD++ V+ LP
Sbjct: 120 RALKQGSQVVVGTPGRILDHIRRGTLDL-SALQSIVLDEADEMLRMGFIDDVETVMAELP 178
Query: 198 KLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILY 257
+ +Q L SAT+ E + + +++P +K++ + + + L K L
Sbjct: 179 ENHQTALFSATMPEPIRRITRRFMQDPQEVKIQATQRS-APDITQSYWLVNGFRKNDALL 237
Query: 258 TLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLY 317
L++ IIF T + E+ T LN ++ +AR + + G
Sbjct: 238 RFLEVEEFDA-AIIFTRTKTGTIDITELCERNGYRTAALNGDMTQQAREQTLDKLKSGRL 296
Query: 318 DVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRA 377
D+++A+D A RGID + +S V+NFD PLD + Y+HR
Sbjct: 297 DILVATDVAA-----------------------RGIDIERISLVVNFDIPLDAESYVHRI 333
Query: 378 GRTARGKNQGTALSFVSLREQDLMND 403
GRT R G AL FV RE+ L+ +
Sbjct: 334 GRTGRAGRSGRALLFVEPRERRLLRN 359
>gi|420426456|ref|ZP_14925510.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-9]
gi|393044095|gb|EJB45090.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-9]
Length = 492
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHNRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPK-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|317052319|ref|YP_004113435.1| DEAD/DEAH box helicase domain-containing protein
[Desulfurispirillum indicum S5]
gi|316947403|gb|ADU66879.1| DEAD/DEAH box helicase domain protein [Desulfurispirillum indicum
S5]
Length = 457
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 117/374 (31%), Positives = 194/374 (51%), Gaps = 33/374 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+A G+ +PT +Q++AIP ILQ +D+ A+TG+GKT F +PM++ I+ +
Sbjct: 13 LRAVAAEGYTQPTPVQQQAIPAILQGRDIQAGAQTGTGKTAGFTLPMLE-ILERQAIRGR 71
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ +AL+L+P++EL Q+ ++++ S +K I V + Q L DIVVA
Sbjct: 72 RHVRALILTPTRELAAQVEESVRTYGKHLS--LKSAVIFGGVAMGPQLANLRRGVDIVVA 129
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H++ K++DL S +E +++DEAD + G+ D++ VL LPK Q +L SAT
Sbjct: 130 TPGRLLDHVQQKSIDL-SKVEFLVLDEADRMLDMGFIHDIRKVLALLPKERQNLLFSATF 188
Query: 210 SEDVLSLKHLILRNPVILKL--EEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
S ++ L +++PV +++ A V Q+ H L + K +L L+ Q
Sbjct: 189 SREITELASSFMKDPVQVEVARRNTAAETVDQVVH---LVDRERKRELLSKLISEGKWQ- 244
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
+ ++F T +L LE+ I + ++ AR A+ F +G V++A+D A
Sbjct: 245 QVLVFTRTKHGANRLAQQLEKDGIHSAAIHGNKSQSARTKALADFKKGQVRVLVATDIAA 304
Query: 328 LETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQG 387
RG+D + +V+NF+ P + Y+HR GRT R N G
Sbjct: 305 -----------------------RGLDIDELPHVVNFELPNVPEDYVHRIGRTGRAGNCG 341
Query: 388 TALSFVSLREQDLM 401
A S V + E+ L+
Sbjct: 342 KACSLVCVDEKQLL 355
>gi|260597188|ref|YP_003209759.1| ATP-dependent RNA helicase RhlE [Cronobacter turicensis z3032]
gi|260216365|emb|CBA29399.1| Putative ATP-dependent RNA helicase rhlE [Cronobacter turicensis
z3032]
Length = 500
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 114/377 (30%), Positives = 194/377 (51%), Gaps = 33/377 (8%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AIA+ G+ EPT IQ +AIP++L KD++ A+TG+GKT F +P++Q++ AQ
Sbjct: 15 LRAIAEQGYNEPTPIQRQAIPVVLSGKDLMASAQTGTGKTAGFTLPLLQRLTAKAPHAQG 74
Query: 90 QE-TKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
+ +AL+L+P++EL Q+ +N++E + D++ + + V ++ Q L D+++
Sbjct: 75 RRPVRALILTPTRELAAQVGENVREYSKYL--DIRSLVVFGGVSINPQMMKLRSGVDVLI 132
Query: 149 ATPARA--LAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
ATP R L H A LD +E++++DEAD + G+ D++ VL LP Q +L S
Sbjct: 133 ATPGRLLDLEHQNAVKLD---QVEVLVLDEADRMLDMGFIHDIRRVLAKLPPKRQNLLFS 189
Query: 207 ATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQ 266
AT S+D+ +L +LRNP +++ A H H + ++ ++ + Y + N Q
Sbjct: 190 ATFSDDIKTLAEKLLRNPEEVEVARRNTASEQITQHVHFVDKKRKRELLSYLIGDGNWQQ 249
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
++F T L L + I+ ++ AR A+ F G V++A+D
Sbjct: 250 --VLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKTGGIRVLVATDIA 307
Query: 327 ALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQ 386
A RG+D + + +V+N++ P + Y+HR GRT R
Sbjct: 308 A-----------------------RGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAAT 344
Query: 387 GTALSFVSLREQDLMND 403
G ALS V + E L+ D
Sbjct: 345 GEALSLVCVDEHKLLRD 361
>gi|294497056|ref|YP_003560756.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551]
gi|294346993|gb|ADE67322.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551]
Length = 503
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 112/373 (30%), Positives = 196/373 (52%), Gaps = 33/373 (8%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ 90
+A++K+G+ E T IQ IPL L+ D++ +A+TG+GKT AF IP+I+K+ V
Sbjct: 15 KAVSKMGFEEATPIQSETIPLALEGHDLIGQAQTGTGKTAAFGIPLIEKV-----DVNVD 69
Query: 91 ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVAT 150
+ L+++P++EL Q+ + + ++ ++ V+ + I D+S Q L + P I+V T
Sbjct: 70 AIQGLIIAPTRELAVQVSEELYKIGQ--TKRVRVLSIYGGQDISRQIRALKKHPHIIVGT 127
Query: 151 PARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLS 210
P R L H+ +TL L+ + VI+DEAD + + G+ +D++ +L +P+ +Q +L SAT+
Sbjct: 128 PGRMLDHINRRTLRLQ-DVHTVILDEADEMLNMGFIEDIEKILSNVPENHQTLLFSATMP 186
Query: 211 EDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTI 270
+ + + P ++K++ + + + Y++ QE K IL LL + + I
Sbjct: 187 TPIRRIAEKFMNEPKVVKVKAKEVT-MPNITQYYLEVQEKRKFDILTRLLDMQSPE-LAI 244
Query: 271 IFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALET 330
IF T + +L L S ++ +L R + QF +G DV++A+D A
Sbjct: 245 IFGRTKRRVDELSEALNMRGYSAQGIHGDLTQSKRLSVLRQFKEGSIDVLVATDVAA--- 301
Query: 331 PQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTAL 390
RG+D V++V NFD P D + Y+HR GRT R G A+
Sbjct: 302 --------------------RGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKMGAAM 341
Query: 391 SFVSLREQDLMND 403
+FV+ RE +++
Sbjct: 342 TFVTPRETGQLHN 354
>gi|290473453|ref|YP_003466320.1| cold-shock DeaD box ATP-dependent RNA helicase [Xenorhabdus
bovienii SS-2004]
gi|289172753|emb|CBJ79524.1| cold-shock DeaD box ATP-dependent RNA helicase [Xenorhabdus
bovienii SS-2004]
Length = 662
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 116/387 (29%), Positives = 197/387 (50%), Gaps = 33/387 (8%)
Query: 18 ELPFTFTLFCIP-LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPM 76
E+ F P L A+ +G+ +P+ IQ++ IP +L +DVL A+TGSGKT AF++P+
Sbjct: 6 EISFADLGLSAPILAALGDMGYEKPSPIQQQCIPHLLNGRDVLGMAQTGSGKTAAFSLPL 65
Query: 77 IQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQ 136
+ I A+++ + LVL+P++EL Q+ + E + K R V V + VQ
Sbjct: 66 LHNI-----DAELKAPQILVLAPTRELAVQVAEACSEFS-KQMRSVNVVALYGGQRYDVQ 119
Query: 137 EPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFL 196
L + P +VV TP R L HLK TLDL S+L+ +++DEAD + G+ +D++ ++ +
Sbjct: 120 LRALRQGPQVVVGTPGRLLDHLKRGTLDL-SNLKGLVLDEADEMLRMGFIEDVENIMSQI 178
Query: 197 PKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATIL 256
P +Q L SAT+ E + + + +P ++++ ++ ++ + K L
Sbjct: 179 PAEHQTALFSATMPEAIRRITRRFMNDPQEVRIQS-SVTTRPDISQSYWSVHGVRKNEAL 237
Query: 257 YTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGL 316
L+ TIIFV T + ++ LE+ ++ LN ++ R + + G
Sbjct: 238 VRFLETEDFDA-TIIFVRTKNATLEVAETLERHGYNSAALNGDMNQALREQTLERLKDGR 296
Query: 317 YDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHR 376
D++IA+D A RG+D + +S V+N+D P+D + Y+HR
Sbjct: 297 LDILIATDVAA-----------------------RGLDVERISLVVNYDIPMDAESYVHR 333
Query: 377 AGRTARGKNQGTALSFVSLREQDLMND 403
GRT R G AL FV RE+ L+ +
Sbjct: 334 IGRTGRAGRAGRALLFVENRERRLLRN 360
>gi|167585895|ref|ZP_02378283.1| DEAD/DEAH box helicase domain protein [Burkholderia ubonensis Bu]
Length = 487
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 115/386 (29%), Positives = 200/386 (51%), Gaps = 35/386 (9%)
Query: 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII- 81
F L L+AIA+ G+ PT IQ +AIP++L +DV+ A+TG+GKT +F++P++Q+++
Sbjct: 16 FGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPILQRLLP 75
Query: 82 --NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL 139
N + +AL+L+P++EL +Q+ N+ ++ + VD++ Q
Sbjct: 76 QANTSASPARHPVRALILTPTRELADQVAANVHAYGKHTP--LRSAVVFGGVDMNPQMAE 133
Query: 140 LVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199
L +I++ATP R L H++ KT +L ++++++DEAD + G+ D++ +L LPK
Sbjct: 134 LRRGVEILIATPGRLLDHVQQKTANL-GQVQMLVLDEADRMLDMGFLPDLQRILNLLPKE 192
Query: 200 YQAILASATLSEDVLSLKHLILRNPVILKL--EEPAIAPVSQLAHYHILAQEDEKATILY 257
Q +L SAT S ++ L LRNP +++ A V+Q+ + +A+ D++A ++
Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYD--VAEGDKQAAVVQ 250
Query: 258 TLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLY 317
L L Q I+F N+ +L LE+ + ++ + R A+ F +G
Sbjct: 251 LLRSRGLKQ--VIVFCNSKIGASRLARNLERDGVVASAIHGDKTQIERMQALDAFKRGEI 308
Query: 318 DVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRA 377
+ ++A+D A RG+D + VINFD P + + Y+HR
Sbjct: 309 EALVATDVAA-----------------------RGLDIAELPAVINFDLPFNAEDYVHRI 345
Query: 378 GRTARGKNQGTALSFVSLREQDLMND 403
GRT R G ALS S E+ + D
Sbjct: 346 GRTGRAGATGDALSLCSPNERKQLAD 371
>gi|407701321|ref|YP_006826108.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii str. 'Black
Sea 11']
gi|407250468|gb|AFT79653.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii str. 'Black
Sea 11']
Length = 483
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 117/374 (31%), Positives = 189/374 (50%), Gaps = 29/374 (7%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AI K G+ P+ IQE+AIP +LQ KDVL A+TG+GKT F +P++Q++++ Q
Sbjct: 13 LKAIEKRGFSTPSPIQEKAIPEVLQGKDVLAAAQTGTGKTAGFGLPILQRLMS-GQPVSG 71
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+AL+L+P++EL Q+ ++I + +K + V ++ Q L + D+++A
Sbjct: 72 NNVRALILTPTRELAAQVEESISAFSEFLP--LKTAVVFGGVGINPQMMKLRKGVDVLIA 129
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L + + S LE++++DEAD + G+ D+K VLK LP+ Q++L SAT
Sbjct: 130 TPGRLLDLYQQNAVKF-SQLEVLVLDEADRMLDMGFIHDIKRVLKLLPQERQSLLFSATF 188
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
S+++ +L I RNPV + PA V + + + + +K T L L+K + +
Sbjct: 189 SDEITALAKTITRNPVSIST-APANTTVEAVEQHLVTIDKSKKTTALICLIKQQKWE-QV 246
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
++F T ++ L + KI + ++ AR A+ F G V++A+D A
Sbjct: 247 LVFSRTKHGANRIAEKLSRSKIPSAAIHGNKSQGARTKALADFKSGAIKVLVATDIAA-- 304
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
RGID + V+N D P Y+HR GRT R G A
Sbjct: 305 ---------------------RGIDISELPIVVNLDLPNTPADYVHRIGRTGRAGASGQA 343
Query: 390 LSFVSLREQDLMND 403
SFV E + D
Sbjct: 344 WSFVCAEELQNLKD 357
>gi|160915730|ref|ZP_02077938.1| hypothetical protein EUBDOL_01739 [Eubacterium dolichum DSM 3991]
gi|158432206|gb|EDP10495.1| DEAD/DEAH box helicase [Eubacterium dolichum DSM 3991]
Length = 572
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 122/373 (32%), Positives = 194/373 (52%), Gaps = 38/373 (10%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A++++G+ + T IQ +AIP I++ KDVL R+ TG+GKT AF IP I+ + Q
Sbjct: 14 LRAVSEMGYEQATEIQAKAIPYIMEGKDVLGRSNTGTGKTAAFGIPAIEMV-----QPQD 68
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ AL++ P++EL Q+ +++ + K VK V I + Q LL IVV
Sbjct: 69 KYANALIICPTRELVTQVAMELRKFS-KYKEGVKIVPIYGGQPIERQIQLLKRGCGIVVG 127
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLP--KLYQAILASA 207
TP R + HL+ +TL L S + +VI+DEAD + + G+++D++ +L +P + YQ IL SA
Sbjct: 128 TPGRIMDHLRRRTLKL-SDIRMVILDEADEMLNMGFKEDIEEILSLMPSERSYQTILFSA 186
Query: 208 TLSEDVLSLKHLILRNPVILKLE--EPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLV 265
T +++ + +PV ++++ + I V QL +Y + +KA L LL +
Sbjct: 187 TWPSEIMRIAKEFQNDPVTVEIKSAQRTIDTVEQL-YYEV--PRGKKANALRVLLN-HYD 242
Query: 266 QGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE 325
+IF NT +L+ L + I C L+ ++ + R + QF G ++IA+D
Sbjct: 243 PELCMIFANTKKMVDELQGELNKHDIKACALHGDMKQEFRSRVMEQFRSGSMPILIATDV 302
Query: 326 KALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKN 385
A RGID V VINFD P D + YIHR GRT R
Sbjct: 303 AA-----------------------RGIDVDDVDLVINFDIPQDNEYYIHRIGRTGRAGK 339
Query: 386 QGTALSFVSLREQ 398
+G A++ +S Q
Sbjct: 340 KGLAITLISGGRQ 352
>gi|420433429|ref|ZP_14932437.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-24]
gi|420507185|ref|ZP_15005698.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
H-24b]
gi|420508875|ref|ZP_15007377.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
H-24c]
gi|420532623|ref|ZP_15030986.1| ATP-dependent RNA helicase [Helicobacter pylori Hp M1]
gi|420534186|ref|ZP_15032537.1| ATP-dependent RNA helicase [Helicobacter pylori Hp M2]
gi|420535991|ref|ZP_15034333.1| ATP-dependent RNA helicase [Helicobacter pylori Hp M3]
gi|420537697|ref|ZP_15036027.1| ATP-dependent RNA helicase [Helicobacter pylori Hp M4]
gi|420539422|ref|ZP_15037741.1| ATP-dependent RNA helicase [Helicobacter pylori Hp M5]
gi|420541180|ref|ZP_15039488.1| ATP-dependent RNA helicase [Helicobacter pylori Hp M6]
gi|420542703|ref|ZP_15040998.1| ATP-dependent RNA helicase [Helicobacter pylori Hp M9]
gi|393050957|gb|EJB51910.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-24]
gi|393119266|gb|EJC19757.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
H-24b]
gi|393120301|gb|EJC20790.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
H-24c]
gi|393140254|gb|EJC40627.1| ATP-dependent RNA helicase [Helicobacter pylori Hp M1]
gi|393142409|gb|EJC42763.1| ATP-dependent RNA helicase [Helicobacter pylori Hp M2]
gi|393143639|gb|EJC43983.1| ATP-dependent RNA helicase [Helicobacter pylori Hp M3]
gi|393145252|gb|EJC45583.1| ATP-dependent RNA helicase [Helicobacter pylori Hp M4]
gi|393147107|gb|EJC47432.1| ATP-dependent RNA helicase [Helicobacter pylori Hp M5]
gi|393147800|gb|EJC48124.1| ATP-dependent RNA helicase [Helicobacter pylori Hp M6]
gi|393159766|gb|EJC60015.1| ATP-dependent RNA helicase [Helicobacter pylori Hp M9]
Length = 491
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E+A + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERAEAIMRLLDTQAPE-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLVSKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|239624536|ref|ZP_04667567.1| DEAD/DEAH box helicase domain-containing protein [Clostridiales
bacterium 1_7_47_FAA]
gi|239520922|gb|EEQ60788.1| DEAD/DEAH box helicase domain-containing protein [Clostridiales
bacterium 1_7_47FAA]
Length = 518
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 125/381 (32%), Positives = 200/381 (52%), Gaps = 41/381 (10%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+ + G+++P+ IQE+AIP +L +D+L A+TG+GKT AFA+P+IQ ++ + Q
Sbjct: 13 LKALDQKGYIKPSPIQEQAIPYVLNGQDLLGCAQTGTGKTAAFALPIIQNLMERPKNRQK 72
Query: 90 QE-TKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
++ +AL+L+P++EL Q+H+NI+E + I V Q L DI+V
Sbjct: 73 KKPVRALILTPTRELALQIHENIEEYGAGTP--INSAVIFGGVSAKPQIQSLRRGIDILV 130
Query: 149 ATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
ATP R L + +DL S +EI ++DEAD + G+ D+K V+ LPK Q +L SAT
Sbjct: 131 ATPGRLLDLIGQHEIDL-SFVEIFVLDEADRMLDMGFIHDVKRVITLLPKKRQTLLFSAT 189
Query: 209 LSEDVLSLKHLILRNPVILKLEEPAIAPVS------QLAHYHILAQEDEKATILYTLLKL 262
+ +++ +L +L NPV K+E + PVS + + Y++ + K +L LL+
Sbjct: 190 MPDEIQALAAKLLHNPV--KVE---VTPVSSTVDLIETSLYYV--DKANKWPLLVHLLEH 242
Query: 263 NLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIA 322
V T++F T + YL + I+ ++ + AR A+ F G V++A
Sbjct: 243 EDVS-STLVFTRTKHGADRGAKYLNKSGITAAAIHGDKSQGARQTALSNFKSGRLRVLVA 301
Query: 323 SDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTAR 382
+D A RGID + +S VINFD P + Y+HR GRT R
Sbjct: 302 TDIAA-----------------------RGIDIEELSCVINFDLPNVPETYVHRIGRTGR 338
Query: 383 GKNQGTALSFVSLREQDLMND 403
G A+SF + E+ + D
Sbjct: 339 AGLGGRAISFSDIEEKAYVKD 359
>gi|423277384|ref|ZP_17256298.1| hypothetical protein HMPREF1203_00515 [Bacteroides fragilis HMW
610]
gi|404587133|gb|EKA91683.1| hypothetical protein HMPREF1203_00515 [Bacteroides fragilis HMW
610]
Length = 418
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 116/373 (31%), Positives = 204/373 (54%), Gaps = 36/373 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+ + + E T IQE+AIP+IL+ +D++ A+TG+GKT AF +P++ + L +
Sbjct: 13 LEALDAMRFEECTPIQEQAIPVILEGRDLIAVAQTGTGKTAAFLLPILNR---LSEGGHP 69
Query: 90 QET-KALVLSPSKELCNQLHKNIQELT--MKCSRDVKCVDISEQVDVSVQEPLLVERPDI 146
++ +++SP++EL Q+ + ++ + M S V ++ + Q+ L+ D+
Sbjct: 70 EDAINCVIMSPTRELAQQIDQQMEGFSYFMPVS-SVAVYGGNDGILFEQQKKGLMLGADV 128
Query: 147 VVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
V+ATP R +AHL +DL S + I+DEAD + G+ +D+ ++K+LPK Q I+ S
Sbjct: 129 VIATPGRLIAHLSLGYVDL-SRVSYFILDEADRMLDMGFYEDIMQIVKYLPKERQTIMFS 187
Query: 207 ATLSEDVLSLKHLILRNPVILKLEEPAIA-PVSQLAHYHILAQEDEKATILYTLLKLNLV 265
AT+ + L + IL NP +KL A++ P ++ + E++K I+ +L +
Sbjct: 188 ATMPSKIQQLANTILNNPAEVKL---AVSKPAEKIVQAAYVCYENQKLGIVRSLFAEEVP 244
Query: 266 QGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE 325
+ + IIF ++ K ++ L+ K++ ++S+L R +++F G ++++A+D
Sbjct: 245 E-RVIIFASSKLKVKEVAKALKMMKLNVGEMHSDLEQAQREFIMHEFKSGRINILVATDI 303
Query: 326 KALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKN 385
VSRGID + VINFD P D + Y+HR GRTAR N
Sbjct: 304 -----------------------VSRGIDIDDIRLVINFDVPHDSEDYVHRIGRTARANN 340
Query: 386 QGTALSFVSLREQ 398
G AL+FV+ +EQ
Sbjct: 341 DGVALTFVNEKEQ 353
>gi|451847806|gb|EMD61113.1| hypothetical protein COCSADRAFT_192893 [Cochliobolus sativus
ND90Pr]
Length = 518
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 122/365 (33%), Positives = 184/365 (50%), Gaps = 34/365 (9%)
Query: 32 AIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQE 91
A L + PT IQ +AIPL L+ +DV+ A TGSGKT AF +P++Q ++ +Q+
Sbjct: 103 ACENLKFTNPTPIQAQAIPLALEGRDVIGLAETGSGKTAAFVLPILQALLEKQQS----- 157
Query: 92 TKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATP 151
L+L+P++EL Q+ + + L +VKC + +D+ Q L ++P I+VATP
Sbjct: 158 LFGLILAPTRELAYQIAQQVDALGSII--NVKCATLVGGMDMVPQAIALSKKPHIIVATP 215
Query: 152 ARALAHLK-AKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPK-LYQAILASATL 209
R L HL+ K LK L+ +++DEAD + + + +LK LP+ L SAT+
Sbjct: 216 GRLLDHLENTKGFSLKH-LKYMVLDEADRLLDLDFGPVLDKILKVLPREGRHTYLYSATM 274
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
S V SL+ L+NPV + + + VS L +I K L LL N+ T
Sbjct: 275 SSKVESLQRAALQNPVRVSISSSSHQVVSTLLQRYIFLPHKYKDLYLIHLLNDNIGH-PT 333
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
IIF TV++ ++ + L L+ +L AR A+ +F D+++A+D A
Sbjct: 334 IIFSRTVNETQRIAILLRTLGFGAIPLHGQLSQSARLGALNKFKTQSRDILVATDVAA-- 391
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
RG+D V V+NFD P D Q Y+HR GRTAR G A
Sbjct: 392 ---------------------RGLDIPAVDLVVNFDLPSDSQTYVHRVGRTARAGKSGKA 430
Query: 390 LSFVS 394
+SFV+
Sbjct: 431 VSFVT 435
>gi|261418549|ref|YP_003252231.1| DEAD/DEAH box helicase [Geobacillus sp. Y412MC61]
gi|297528577|ref|YP_003669852.1| DEAD/DEAH box helicase [Geobacillus sp. C56-T3]
gi|319765363|ref|YP_004130864.1| DEAD/DEAH box helicase [Geobacillus sp. Y412MC52]
gi|448236523|ref|YP_007400581.1| DEAD-box ATP-dependent RNA helicase [Geobacillus sp. GHH01]
gi|261375006|gb|ACX77749.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y412MC61]
gi|297251829|gb|ADI25275.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. C56-T3]
gi|317110229|gb|ADU92721.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y412MC52]
gi|445205365|gb|AGE20830.1| DEAD-box ATP-dependent RNA helicase [Geobacillus sp. GHH01]
Length = 467
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 112/373 (30%), Positives = 201/373 (53%), Gaps = 43/373 (11%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++AI ++G+ E T IQ + IPL LQNKDV+ +A+TG+GKT AF IP+++K +++K A
Sbjct: 14 MKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIVEK-VDVKNGA-- 70
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ALV++P++EL Q+ + + ++ + V+ + I D+ Q L + P ++V
Sbjct: 71 --IQALVVAPTRELAIQVSEELYKIG--AVKRVRVLPIYGGQDIERQIRALKKHPHVIVG 126
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + H+ TL L+ + V++DEAD + + G+ +D++A+L +P Q +L SAT+
Sbjct: 127 TPGRIIDHINRGTLRLE-HVHTVVLDEADEMLNMGFIEDIEAILSHVPAERQTLLFSATM 185
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLL-----KLNL 264
+ + + + P ++K++ + V + Y++ E +K IL LL +L +
Sbjct: 186 PDPIRRIAERFMNEPELVKVKAKEMT-VPNIQQYYLEVHEKKKFDILTRLLDIQAPELAI 244
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
V G+T V+ + + L+ Y + ++ +L R + +F +G ++++A+D
Sbjct: 245 VFGRTKRRVDELAEALNLRGYAAEG------IHGDLSQAKRLSVLRKFKEGAIEILVATD 298
Query: 325 EKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384
A RG+D V++V NFD P D + Y+HR GRT R
Sbjct: 299 VAA-----------------------RGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAG 335
Query: 385 NQGTALSFVSLRE 397
G A++FV+ RE
Sbjct: 336 KTGVAMTFVTPRE 348
>gi|254247597|ref|ZP_04940918.1| Helicase [Burkholderia cenocepacia PC184]
gi|124872373|gb|EAY64089.1| Helicase [Burkholderia cenocepacia PC184]
Length = 521
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 117/390 (30%), Positives = 200/390 (51%), Gaps = 38/390 (9%)
Query: 22 TFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQ 78
TF F + L+AI + G+ PT IQ +AIP++L +DV+ A+TG+GKT +F++P+IQ
Sbjct: 35 TFDQFGLAPDILKAIVEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 94
Query: 79 KII---NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSV 135
+++ N + +AL+L+P++EL +Q+ N+ ++ + VD++
Sbjct: 95 RLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTP--LRSAVVFGGVDMNP 152
Query: 136 QEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKF 195
Q L +I++ATP R L H++ KT +L ++I+++DEAD + G+ D++ +L
Sbjct: 153 QSAELRRGVEILIATPGRLLDHVQQKTANL-GQVQILVLDEADRMLDMGFLPDLQRILNL 211
Query: 196 LPKLYQAILASATLSEDVLSLKHLILRNPVILKL--EEPAIAPVSQLAHYHILAQEDEKA 253
LPK Q +L SAT S ++ L LRNP +++ A V+Q+ + +A+ D++A
Sbjct: 212 LPKERQTLLFSATFSGEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYD--VAEGDKQA 269
Query: 254 TILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFN 313
++ L L Q I+F N+ +L LE+ + ++ + R A+ F
Sbjct: 270 AVVQLLRDRGLKQ--VIVFCNSKIGASRLARNLERDGVVASAIHGDKTQIERMQALDAFK 327
Query: 314 QGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCY 373
+G + ++A+D A RG+D + VINFD P + Y
Sbjct: 328 RGEIEALVATDVAA-----------------------RGLDIAELPAVINFDLPFSAEDY 364
Query: 374 IHRAGRTARGKNQGTALSFVSLREQDLMND 403
+HR GRT R G ALS S E+ + D
Sbjct: 365 VHRIGRTGRAGATGDALSLCSPNERKQLAD 394
>gi|423113365|ref|ZP_17101056.1| ATP-dependent RNA helicase rhlE [Klebsiella oxytoca 10-5245]
gi|376388734|gb|EHT01427.1| ATP-dependent RNA helicase rhlE [Klebsiella oxytoca 10-5245]
Length = 454
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 117/379 (30%), Positives = 201/379 (53%), Gaps = 37/379 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+A+ G++EPT IQ++AIP +LQ +D++ A+TG+GKT F +P++Q +I + A+
Sbjct: 13 LRAVAEQGYVEPTSIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQHLIQKEPHAKG 72
Query: 90 QE-TKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
+ +AL+L+P++EL Q+ +N+++ + +V+ + + V ++ Q L DI+V
Sbjct: 73 RRPVRALILTPTRELAAQIGENVRDYSKYL--NVRSLVVFGGVSINPQMMKLRSGVDILV 130
Query: 149 ATPARA--LAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
ATP R L H A +LD +E++++DEAD + G+ D++ VL LP Q +L S
Sbjct: 131 ATPGRLLDLEHQNAVSLD---KVEVLVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFS 187
Query: 207 ATLSEDVLSLKHLILRNPVILKLEEPAIAP--VSQLAHYHILAQEDEKATILYTLLKLNL 264
AT S+D+ SL +L NP+ +++ A VSQL H+ + K +L ++
Sbjct: 188 ATFSDDIKSLAEKLLHNPLEIEVARRNTASEQVSQLVHF---VDKKRKRELLSQMIGEGN 244
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
Q + ++F T L L + I + ++ AR A+ F G V++A+D
Sbjct: 245 WQ-QVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGGIRVLVATD 303
Query: 325 EKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384
A RG+D + + +V+N++ P + Y+HR GRT R
Sbjct: 304 IAA-----------------------RGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAA 340
Query: 385 NQGTALSFVSLREQDLMND 403
G ALS V + E L++D
Sbjct: 341 ATGEALSLVCVDEHKLLHD 359
>gi|332293596|ref|YP_004432205.1| DEAD/DEAH box helicase domain protein [Krokinobacter sp. 4H-3-7-5]
gi|332171682|gb|AEE20937.1| DEAD/DEAH box helicase domain protein [Krokinobacter sp. 4H-3-7-5]
Length = 427
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 117/373 (31%), Positives = 193/373 (51%), Gaps = 35/373 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+++ G+ P+ IQ++AIP++LQ KDVL A+TG+GKT F +PMI ++IN + +
Sbjct: 13 LKAVSEKGYTTPSPIQQKAIPVVLQGKDVLASAQTGTGKTAGFTLPMIHRLINNPKQGR- 71
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
++ +ALVL+P++EL Q+ +N+ E + D+K + I V+ + Q L + DI+VA
Sbjct: 72 RKIRALVLTPTRELAAQIQENVLEYSKYV--DIKSMVIFGGVNQNPQVRTLRQGVDILVA 129
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L L+ + L S +E +++DEAD + G+ D+K VLK +P Q +L SAT
Sbjct: 130 TPGR-LLDLQNQGLLSLSDVEFLVLDEADRMLDMGFIHDIKKVLKMVPAKRQNLLFSATF 188
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG-- 267
+ D+ IL NPV+++ P ++ + K +L ++ +G
Sbjct: 189 NTDIKKFASSILTNPVLVE-ATPENTTAEKVDQKSYRVDKSRKTEMLIKFIR----EGNW 243
Query: 268 -KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
+ ++F T +L LE+ IS+ ++ AR A+ F G V++A+D
Sbjct: 244 DQVLVFTRTKHGANRLSQKLEKDGISSAAIHGNKTQNARVKALAGFKSGKVRVLVATDIA 303
Query: 327 ALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQ 386
A RG+D + VIN++ P + Y+HR GRT R
Sbjct: 304 A-----------------------RGLDIPLLPYVINYELPNVPEDYVHRIGRTGRAGAS 340
Query: 387 GTALSFVSLREQD 399
G A+S V + E D
Sbjct: 341 GQAISLVGVDEVD 353
>gi|303251558|ref|ZP_07337732.1| cold-shock DEAD box protein-A [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|302649556|gb|EFL79738.1| cold-shock DEAD box protein-A [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
Length = 619
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 117/386 (30%), Positives = 193/386 (50%), Gaps = 35/386 (9%)
Query: 21 FTFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMI 77
TF +P L A+ +G++ P+ IQ+ IP +L +DVL A+TGSGKT AF++P++
Sbjct: 6 LTFADLGLPQSILDAVNDMGFVTPSPIQQETIPHLLAGRDVLGMAQTGSGKTAAFSLPLL 65
Query: 78 QKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQE 137
+I K+ Q+ LV++P++EL Q+ ++ T K + V V + +Q
Sbjct: 66 AQIDPTKRHPQM-----LVMAPTRELAIQVADACEQFT-KNMKGVNVVTVYGGQRYDIQL 119
Query: 138 PLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLP 197
L + +VV TP R L H++ TLDL S+L+ +++DEAD + G+ DD++ V+ LP
Sbjct: 120 RALKQGSQVVVGTPGRILDHIRRGTLDL-SALQSIVLDEADEMLRMGFIDDVETVMAELP 178
Query: 198 KLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILY 257
+ +Q L SAT+ E + + +++P +K++ + + + L K L
Sbjct: 179 ENHQTALFSATMPEPIRRITRRFMQDPQEVKIQATQRS-APDITQSYWLVNGFRKNDALL 237
Query: 258 TLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLY 317
L++ IIF T + E+ T LN ++ +AR + + G
Sbjct: 238 RFLEVEEFDA-AIIFTRTKTGTIDITELCERNGYRTAALNGDMTQQAREQTLDKLKSGRL 296
Query: 318 DVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRA 377
D+++A+D A RGID + +S V+NFD PLD + Y+HR
Sbjct: 297 DILVATDVAA-----------------------RGIDIERISLVVNFDIPLDAESYVHRI 333
Query: 378 GRTARGKNQGTALSFVSLREQDLMND 403
GRT R G AL FV RE+ L+ +
Sbjct: 334 GRTGRAGRSGRALLFVEPRERRLLRN 359
>gi|186475195|ref|YP_001856665.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
phymatum STM815]
gi|184191654|gb|ACC69619.1| DEAD/DEAH box helicase domain protein [Burkholderia phymatum
STM815]
Length = 522
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 114/379 (30%), Positives = 195/379 (51%), Gaps = 37/379 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++A+ +LG+ PT IQ++AIP +L D+L A+TG+GKT F +P++Q+++ +
Sbjct: 13 VRAVNELGYTSPTPIQQQAIPAVLNGGDLLAGAQTGTGKTAGFTLPILQRLLTMPPAPGG 72
Query: 90 QE-TKALVLSPSKELCNQLHKNIQE----LTMKCSRDVKCVDISEQVDVSVQEPLLVERP 144
+ +AL+L+P++EL Q+ ++++ L +K + V I+ Q+D L
Sbjct: 73 KRVVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIDA------LRRGV 126
Query: 145 DIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAIL 204
DIVVATP R L H++ KT+DL S LEI+++DEAD + G+ D+K VL LP Q +L
Sbjct: 127 DIVVATPGRLLDHMQQKTIDL-SHLEILVLDEADRMLDMGFIHDIKRVLAKLPPKRQNLL 185
Query: 205 ASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNL 264
SAT S+++ +L +L P ++++ + H + ++ ++ + + + + N
Sbjct: 186 FSATFSDEIKALADSLLDAPALIEVARRNTTAETVAQKIHPVDRDRKRELLTHLIKQHNW 245
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
Q ++F T +L L + IS ++ AR A+ +F V++A+D
Sbjct: 246 FQ--VLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKNNTLQVLVATD 303
Query: 325 EKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384
A RGID + +V+NFD P + Y+HR GRT R
Sbjct: 304 IAA-----------------------RGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAG 340
Query: 385 NQGTALSFVSLREQDLMND 403
G A+S V + E L+ D
Sbjct: 341 ATGEAVSLVCVDELQLLKD 359
>gi|423302506|ref|ZP_17280528.1| hypothetical protein HMPREF1057_03669 [Bacteroides finegoldii
CL09T03C10]
gi|408470382|gb|EKJ88916.1| hypothetical protein HMPREF1057_03669 [Bacteroides finegoldii
CL09T03C10]
Length = 374
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 126/388 (32%), Positives = 202/388 (52%), Gaps = 28/388 (7%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AI + G+ PT IQE+AIP L +D+L A+TG+GKT +FAIP+IQ + K+T +
Sbjct: 13 LKAIEEKGYTVPTSIQEKAIPAALAKRDILGCAQTGTGKTASFAIPIIQHLQANKETDKR 72
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
Q KAL+L+P++EL Q+ + I + + V+ I V+ Q +L + DI+VA
Sbjct: 73 QGIKALILTPTRELALQISECIDDYSKYTH--VRHGVIFGGVNQRPQIDMLHKGIDILVA 130
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L + + L +++E ++DEAD + G+ D+K +L LPK Q + SAT+
Sbjct: 131 TPGRLLDLMNQGYIHL-TNIEYFVLDEADRMLDMGFIHDIKRILPKLPKEKQTLFFSATM 189
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+ +++L +L+NPV + + P + V + ++ EK+ +L ++L+ Q
Sbjct: 190 PDSIIALTKSLLKNPVKIYI-TPKSSTVDSIKQIIYFVEKKEKSQLLISILQKAEDQ-SV 247
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
+IF T K+ L + I + ++ AR A+ F G V++A+D
Sbjct: 248 LIFSRTKHNADKIVRILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTKVMVATDI---- 303
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRGID + VIN+D P + Y+HR GRT R N+GTA
Sbjct: 304 -------------------ASRGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNEGTA 344
Query: 390 LSFVSLREQDLMNDGTALSFVSLREQDL 417
L+F S E+ L+ND L+ L + D
Sbjct: 345 LTFCSQEERKLVNDIQKLTGKKLNKADF 372
>gi|421716313|ref|ZP_16155624.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R037c]
gi|407220576|gb|EKE90382.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R037c]
Length = 492
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 108/365 (29%), Positives = 190/365 (52%), Gaps = 34/365 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ + G+ P+ IQE+AIP +LQ +DV+ +A+TG+GKT AFA+P+I NLK +
Sbjct: 32 LKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN---NLKNNHTI 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALV++P++EL Q+ I +L CV + V + + + P +++A
Sbjct: 89 E---ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCE--FIKKNPQVMIA 143
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HLK + + K ++V++DE+D + G+ DD++ + +LP Q +L SAT+
Sbjct: 144 TPGRLLDHLKNERIH-KFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATM 202
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + L IL NP+ + + I ++++ E E++ + LL + K+
Sbjct: 203 PEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVI-NEHERSEAIMRLLDTQAPK-KS 260
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
I+F T + +L +L + L+ ++ + R ++ F + DV++A+D
Sbjct: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATD----- 315
Query: 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
SRG+D VS+V N+ PL+ + YIHR GRT R +G A
Sbjct: 316 ------------------VASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMA 357
Query: 390 LSFVS 394
++ V+
Sbjct: 358 ITLVT 362
>gi|344173743|emb|CCA88920.1| ATP-dependent RNA helicase hydrolase [Ralstonia syzygii R24]
Length = 549
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 122/394 (30%), Positives = 199/394 (50%), Gaps = 62/394 (15%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++A+A+LG+ EPT IQ +AIP IL+ D+L A+TG+GKT F +P++ ++ + Q +V
Sbjct: 13 VRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLLHRLSAV-QPNKV 71
Query: 90 QET-------KALVLSPSKELCNQLHKNIQE----LTMKCSRDVKCVDISEQVDVSVQEP 138
+ +ALVL+P++EL Q+ ++++ L +K V I+ Q+D
Sbjct: 72 HTSHGMRYPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGINPQIDA----- 126
Query: 139 LLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPK 198
L DIVVATP R L H+ +T+DL S +E++++DEAD + G+ D++ +L LP
Sbjct: 127 -LKRGVDIVVATPGRLLDHVGQRTIDL-SHIELLVLDEADRMLDMGFIHDIRKILNILPP 184
Query: 199 LYQAILASATLSEDVLSLKHLILRNPVILKLE---------EPAIAPVSQLAHYHILAQE 249
Q +L SAT S+D+ +L +L P ++++ E I PV +
Sbjct: 185 KRQNLLFSATFSDDIRALADRLLDQPALIEVARRNTTAETVEQRIYPVDR---------- 234
Query: 250 DEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAV 309
+ K +L TL++ N + ++F T +L L + I ++ AR A+
Sbjct: 235 ERKRELLATLVRDNDWH-QVLVFTRTKHGANRLAEQLTRDGIPALAIHGNKSQSARTRAL 293
Query: 310 YQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLD 369
+F G V++A+D A RGID + +V+NFD P
Sbjct: 294 SEFKAGTLRVLVATDIAA-----------------------RGIDIDQLPHVVNFDLPNV 330
Query: 370 IQCYIHRAGRTARGKNQGTALSFVSLREQDLMND 403
+ Y+HR GRT R QG A+S V + E L+ D
Sbjct: 331 PEDYVHRIGRTGRAGAQGEAISLVCVDEHGLLRD 364
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.136 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,124,550,893
Number of Sequences: 23463169
Number of extensions: 341305135
Number of successful extensions: 1113535
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 24990
Number of HSP's successfully gapped in prelim test: 4721
Number of HSP's that attempted gapping in prelim test: 991707
Number of HSP's gapped (non-prelim): 39009
length of query: 540
length of database: 8,064,228,071
effective HSP length: 148
effective length of query: 392
effective length of database: 8,886,646,355
effective search space: 3483565371160
effective search space used: 3483565371160
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 79 (35.0 bits)