Query psy16633
Match_columns 540
No_of_seqs 363 out of 3084
Neff 8.9
Searched_HMMs 46136
Date Fri Aug 16 17:52:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16633.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16633hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0346|consensus 100.0 7E-109 2E-113 798.7 32.8 472 19-507 19-530 (569)
2 KOG0330|consensus 100.0 7.6E-74 1.6E-78 548.1 30.0 383 20-459 62-446 (476)
3 KOG0331|consensus 100.0 6.4E-69 1.4E-73 547.5 32.5 353 22-400 95-452 (519)
4 KOG0338|consensus 100.0 5.8E-69 1.3E-73 529.1 25.2 381 22-453 185-569 (691)
5 COG0513 SrmB Superfamily II DN 100.0 4.2E-67 9E-72 556.3 40.8 360 22-428 33-396 (513)
6 KOG0340|consensus 100.0 1.3E-66 2.8E-71 492.9 27.3 385 20-458 8-399 (442)
7 KOG0342|consensus 100.0 7.9E-65 1.7E-69 500.0 30.0 356 22-402 86-443 (543)
8 KOG0333|consensus 100.0 1.2E-64 2.5E-69 500.6 31.3 364 5-400 236-628 (673)
9 PRK04837 ATP-dependent RNA hel 100.0 2.5E-63 5.4E-68 521.1 41.8 365 19-428 8-377 (423)
10 KOG0328|consensus 100.0 5.6E-65 1.2E-69 467.7 25.2 357 22-428 31-388 (400)
11 PTZ00110 helicase; Provisional 100.0 3.1E-63 6.7E-68 531.6 40.7 365 6-400 122-488 (545)
12 KOG0345|consensus 100.0 1.2E-63 2.6E-68 488.3 32.0 352 23-400 11-368 (567)
13 KOG0343|consensus 100.0 5.1E-64 1.1E-68 498.2 28.0 351 22-400 73-426 (758)
14 KOG0326|consensus 100.0 2.5E-64 5.4E-69 470.6 18.8 357 22-429 89-445 (459)
15 KOG0348|consensus 100.0 4.1E-63 8.9E-68 490.4 27.3 359 22-405 140-563 (708)
16 PRK10590 ATP-dependent RNA hel 100.0 1.4E-61 3.1E-66 511.2 40.2 362 22-428 5-367 (456)
17 PRK11776 ATP-dependent RNA hel 100.0 4.7E-61 1E-65 509.2 41.3 357 22-428 8-364 (460)
18 PLN00206 DEAD-box ATP-dependen 100.0 3.6E-61 7.8E-66 514.2 40.7 366 3-400 110-479 (518)
19 PRK04537 ATP-dependent RNA hel 100.0 7.7E-61 1.7E-65 514.8 39.9 362 22-428 13-379 (572)
20 PRK11634 ATP-dependent RNA hel 100.0 1.3E-60 2.8E-65 515.7 41.4 347 22-400 10-356 (629)
21 PRK11192 ATP-dependent RNA hel 100.0 4.2E-60 9.2E-65 498.8 42.4 361 22-428 5-367 (434)
22 KOG0336|consensus 100.0 2.7E-61 5.9E-66 463.3 23.1 362 9-400 214-576 (629)
23 KOG0335|consensus 100.0 1.8E-59 3.9E-64 470.1 27.5 368 2-400 62-448 (482)
24 PRK01297 ATP-dependent RNA hel 100.0 6.3E-58 1.4E-62 486.6 41.0 362 22-428 91-457 (475)
25 KOG0339|consensus 100.0 1.2E-58 2.6E-63 455.6 28.6 368 2-400 211-579 (731)
26 KOG0341|consensus 100.0 2.2E-60 4.8E-65 454.2 14.2 362 4-396 160-528 (610)
27 KOG0347|consensus 100.0 2.1E-59 4.6E-64 465.3 19.3 351 22-400 185-574 (731)
28 PTZ00424 helicase 45; Provisio 100.0 4.8E-56 1.1E-60 464.2 40.4 357 22-428 32-389 (401)
29 KOG0332|consensus 100.0 2.8E-55 6E-60 418.1 26.4 354 22-428 94-459 (477)
30 KOG0337|consensus 100.0 1.4E-55 3.1E-60 426.0 20.0 350 22-402 25-374 (529)
31 KOG0334|consensus 100.0 1.2E-54 2.6E-59 463.5 27.2 366 5-400 356-724 (997)
32 KOG0327|consensus 100.0 1E-54 2.2E-59 418.1 23.7 355 22-428 30-385 (397)
33 KOG0350|consensus 100.0 1.8E-54 3.8E-59 426.4 25.0 367 3-400 110-544 (620)
34 TIGR03817 DECH_helic helicase/ 100.0 2.9E-52 6.2E-57 459.2 37.5 336 20-395 16-385 (742)
35 KOG0344|consensus 100.0 3.8E-53 8.2E-58 426.9 24.9 384 2-428 120-510 (593)
36 KOG4284|consensus 100.0 3E-52 6.4E-57 420.4 22.4 351 10-397 21-380 (980)
37 PLN03137 ATP-dependent DNA hel 100.0 8.1E-50 1.8E-54 436.8 35.9 331 22-399 441-790 (1195)
38 TIGR00614 recQ_fam ATP-depende 100.0 3.1E-49 6.8E-54 418.5 33.2 320 35-400 6-337 (470)
39 PRK11057 ATP-dependent DNA hel 100.0 5.9E-47 1.3E-51 411.4 35.1 329 23-400 7-347 (607)
40 TIGR01389 recQ ATP-dependent D 100.0 2.9E-46 6.4E-51 407.0 33.6 320 32-400 4-335 (591)
41 KOG0329|consensus 100.0 3.2E-48 7E-53 352.2 13.8 310 22-397 46-356 (387)
42 PRK13767 ATP-dependent helicas 100.0 9.1E-46 2E-50 415.5 35.8 339 25-393 18-395 (876)
43 PRK02362 ski2-like helicase; P 100.0 1.1E-45 2.4E-50 411.1 33.8 332 22-396 5-397 (737)
44 PRK00254 ski2-like helicase; P 100.0 3E-44 6.4E-49 398.7 33.9 333 22-397 5-389 (720)
45 TIGR02621 cas3_GSU0051 CRISPR- 100.0 1.7E-43 3.7E-48 382.4 35.1 318 36-395 12-390 (844)
46 TIGR00580 mfd transcription-re 100.0 2E-43 4.3E-48 392.5 35.8 324 22-396 433-770 (926)
47 COG1201 Lhr Lhr-like helicases 100.0 1.5E-42 3.2E-47 373.2 32.7 336 25-395 8-361 (814)
48 PRK10689 transcription-repair 100.0 2.2E-42 4.9E-47 391.9 33.7 318 27-395 588-918 (1147)
49 PRK01172 ski2-like helicase; P 100.0 1.2E-41 2.5E-46 376.3 31.1 329 22-396 5-378 (674)
50 COG0514 RecQ Superfamily II DN 100.0 3.4E-42 7.3E-47 358.1 24.3 323 30-400 6-341 (590)
51 PRK10917 ATP-dependent DNA hel 100.0 7.4E-41 1.6E-45 367.4 36.3 316 29-394 251-587 (681)
52 TIGR00643 recG ATP-dependent D 100.0 2E-40 4.3E-45 361.8 34.9 319 27-394 223-564 (630)
53 PRK09751 putative ATP-dependen 100.0 9.9E-41 2.2E-45 380.1 33.5 307 60-394 1-381 (1490)
54 PHA02653 RNA helicase NPH-II; 100.0 1.2E-39 2.6E-44 350.9 30.4 314 42-398 166-516 (675)
55 KOG0948|consensus 100.0 2E-40 4.3E-45 339.9 19.5 396 40-539 129-635 (1041)
56 PRK09401 reverse gyrase; Revie 100.0 5.7E-39 1.2E-43 365.0 33.1 301 31-381 71-429 (1176)
57 TIGR01970 DEAH_box_HrpB ATP-de 100.0 1.3E-38 2.8E-43 350.8 33.9 319 46-415 8-355 (819)
58 PRK14701 reverse gyrase; Provi 100.0 5.7E-39 1.2E-43 372.0 31.7 325 28-395 67-455 (1638)
59 PRK11664 ATP-dependent RNA hel 100.0 4.7E-38 1E-42 347.1 33.3 322 46-418 11-361 (812)
60 PRK12898 secA preprotein trans 100.0 8.9E-38 1.9E-42 331.4 30.5 319 36-397 100-587 (656)
61 KOG0349|consensus 100.0 7.2E-39 1.6E-43 310.5 19.0 311 94-429 289-663 (725)
62 TIGR01587 cas3_core CRISPR-ass 100.0 7.5E-38 1.6E-42 321.9 27.5 299 57-396 1-336 (358)
63 TIGR01054 rgy reverse gyrase. 100.0 5.6E-37 1.2E-41 349.3 35.8 294 27-367 65-408 (1171)
64 PHA02558 uvsW UvsW helicase; P 100.0 4.4E-37 9.5E-42 327.5 29.1 309 38-393 112-449 (501)
65 COG1111 MPH1 ERCC4-like helica 100.0 1.4E-35 3E-40 295.6 33.1 324 39-398 14-483 (542)
66 KOG0352|consensus 100.0 1.3E-37 2.8E-42 301.6 17.8 330 27-401 5-367 (641)
67 COG1202 Superfamily II helicas 100.0 1E-36 2.2E-41 305.2 23.7 336 22-398 198-555 (830)
68 PRK09200 preprotein translocas 100.0 3.6E-36 7.8E-41 325.6 29.9 321 36-398 75-543 (790)
69 COG1205 Distinct helicase fami 100.0 9.6E-36 2.1E-40 329.3 30.4 340 22-394 52-420 (851)
70 COG1204 Superfamily II helicas 100.0 5.8E-36 1.2E-40 326.6 28.3 332 25-394 16-406 (766)
71 KOG0351|consensus 100.0 4.1E-36 8.9E-41 329.7 24.9 328 28-400 251-596 (941)
72 TIGR03158 cas3_cyano CRISPR-as 100.0 8.4E-35 1.8E-39 296.9 30.4 294 44-381 1-357 (357)
73 TIGR00963 secA preprotein tran 100.0 1.2E-34 2.6E-39 309.0 28.4 319 36-398 53-519 (745)
74 TIGR03714 secA2 accessory Sec 100.0 1.2E-34 2.6E-39 310.9 28.3 320 36-398 67-539 (762)
75 PRK13766 Hef nuclease; Provisi 100.0 1.9E-33 4E-38 316.6 35.0 323 39-397 14-480 (773)
76 KOG0947|consensus 100.0 5.1E-34 1.1E-38 299.6 23.3 312 33-394 291-721 (1248)
77 PRK11131 ATP-dependent RNA hel 100.0 4E-33 8.7E-38 312.9 30.6 322 45-421 79-436 (1294)
78 KOG0354|consensus 100.0 2.3E-32 5E-37 287.7 25.5 324 38-397 60-530 (746)
79 KOG0353|consensus 100.0 8E-33 1.7E-37 264.6 19.0 332 22-398 75-469 (695)
80 COG4581 Superfamily II RNA hel 100.0 8.1E-32 1.8E-36 294.1 26.8 321 30-395 110-536 (1041)
81 TIGR00603 rad25 DNA repair hel 100.0 1.1E-31 2.4E-36 288.1 24.1 308 40-399 255-610 (732)
82 PRK05580 primosome assembly pr 100.0 2E-30 4.4E-35 283.9 33.9 313 40-400 144-553 (679)
83 KOG0952|consensus 100.0 2.2E-31 4.8E-36 283.0 23.8 331 35-399 105-494 (1230)
84 PRK09694 helicase Cas3; Provis 100.0 2E-29 4.3E-34 278.1 31.7 313 40-385 286-664 (878)
85 TIGR01967 DEAH_box_HrpA ATP-de 100.0 2.1E-29 4.6E-34 284.0 30.4 328 35-413 59-421 (1283)
86 PRK04914 ATP-dependent helicas 100.0 8.8E-29 1.9E-33 274.6 34.1 321 40-397 152-604 (956)
87 cd00268 DEADc DEAD-box helicas 100.0 1.2E-29 2.5E-34 239.8 23.3 200 22-227 3-202 (203)
88 COG1200 RecG RecG-like helicas 100.0 3E-28 6.5E-33 253.2 30.6 324 23-397 245-592 (677)
89 TIGR00595 priA primosomal prot 100.0 4.8E-28 1E-32 256.2 28.0 289 59-395 1-380 (505)
90 COG1061 SSL2 DNA or RNA helica 100.0 3.3E-28 7.1E-33 254.5 24.6 299 40-388 36-382 (442)
91 PRK12899 secA preprotein trans 100.0 2.5E-27 5.5E-32 255.7 28.4 148 22-181 66-228 (970)
92 PRK13104 secA preprotein trans 100.0 2.9E-27 6.3E-32 255.9 27.6 319 36-397 79-588 (896)
93 COG1197 Mfd Transcription-repa 100.0 1.2E-26 2.7E-31 253.7 30.1 324 22-396 576-913 (1139)
94 PRK12904 preprotein translocas 100.0 9.4E-27 2E-31 251.8 28.4 317 36-397 78-574 (830)
95 KOG0951|consensus 100.0 4.7E-27 1E-31 253.0 22.8 341 25-399 296-705 (1674)
96 PRK12906 secA preprotein trans 100.0 8.2E-27 1.8E-31 251.3 24.3 319 36-397 77-554 (796)
97 PF00270 DEAD: DEAD/DEAH box h 99.9 4.4E-26 9.6E-31 208.7 17.5 165 42-215 1-168 (169)
98 COG4098 comFA Superfamily II D 99.9 2.1E-24 4.6E-29 205.3 29.0 307 37-398 93-418 (441)
99 KOG0950|consensus 99.9 9.1E-25 2E-29 232.1 23.6 324 26-398 209-613 (1008)
100 PRK11448 hsdR type I restricti 99.9 2.8E-24 6.2E-29 243.9 26.8 303 40-384 413-801 (1123)
101 PRK13107 preprotein translocas 99.9 9.6E-24 2.1E-28 228.0 25.6 318 36-397 79-592 (908)
102 COG1643 HrpA HrpA-like helicas 99.9 1.8E-22 3.8E-27 220.0 29.0 335 42-424 52-415 (845)
103 COG1203 CRISPR-associated heli 99.9 1.7E-22 3.7E-27 223.6 24.5 327 41-399 196-553 (733)
104 KOG0922|consensus 99.9 6.7E-22 1.5E-26 204.0 26.8 322 46-418 57-412 (674)
105 KOG0920|consensus 99.9 2E-22 4.3E-27 218.6 22.6 389 42-491 175-624 (924)
106 PLN03142 Probable chromatin-re 99.9 2.7E-21 5.8E-26 215.9 29.0 314 40-392 169-593 (1033)
107 COG1198 PriA Primosomal protei 99.9 1.5E-21 3.2E-26 209.8 23.5 317 39-400 197-607 (730)
108 TIGR01407 dinG_rel DnaQ family 99.9 1.2E-20 2.6E-25 213.2 29.7 332 25-395 231-813 (850)
109 TIGR00631 uvrb excinuclease AB 99.9 2E-20 4.3E-25 203.0 28.9 123 254-400 430-557 (655)
110 COG1110 Reverse gyrase [DNA re 99.9 9.4E-20 2E-24 195.1 29.2 266 30-324 72-391 (1187)
111 PRK05298 excinuclease ABC subu 99.9 8E-20 1.7E-24 199.7 27.6 142 255-428 435-581 (652)
112 COG0556 UvrB Helicase subunit 99.9 5.8E-20 1.2E-24 184.5 23.3 123 249-395 429-556 (663)
113 KOG0923|consensus 99.8 7.4E-20 1.6E-24 187.1 21.5 300 43-394 268-604 (902)
114 PRK12900 secA preprotein trans 99.8 4.3E-20 9.2E-25 200.6 20.9 127 247-398 578-713 (1025)
115 smart00487 DEXDc DEAD-like hel 99.8 2.3E-19 5E-24 167.6 19.9 188 35-231 3-192 (201)
116 PRK12326 preprotein translocas 99.8 1.8E-18 3.8E-23 183.3 27.8 319 36-397 75-548 (764)
117 KOG0926|consensus 99.8 1.2E-18 2.5E-23 181.5 23.5 315 39-397 243-705 (1172)
118 KOG0949|consensus 99.8 1.1E-18 2.3E-23 185.2 21.7 165 37-213 509-675 (1330)
119 TIGR00348 hsdR type I site-spe 99.8 2.1E-18 4.6E-23 189.3 24.0 302 40-383 238-634 (667)
120 COG4096 HsdR Type I site-speci 99.8 9.5E-19 2E-23 184.9 18.7 296 39-383 164-525 (875)
121 KOG0924|consensus 99.8 4.3E-18 9.3E-23 174.6 21.4 300 42-396 358-697 (1042)
122 KOG4150|consensus 99.8 1.5E-18 3.2E-23 174.6 16.2 336 29-400 275-646 (1034)
123 PRK07246 bifunctional ATP-depe 99.8 4.4E-17 9.6E-22 181.9 26.9 132 36-181 242-449 (820)
124 KOG0953|consensus 99.8 5.4E-18 1.2E-22 170.9 17.2 267 55-393 191-474 (700)
125 PRK13103 secA preprotein trans 99.8 7.2E-17 1.6E-21 175.1 23.1 318 36-397 79-592 (913)
126 cd00079 HELICc Helicase superf 99.7 3.6E-17 7.8E-22 142.6 14.7 128 241-392 3-131 (131)
127 PRK12903 secA preprotein trans 99.7 8E-16 1.7E-20 165.4 26.0 317 36-397 75-540 (925)
128 TIGR03117 cas_csf4 CRISPR-asso 99.7 3.3E-15 7.2E-20 160.0 30.5 72 50-127 11-83 (636)
129 CHL00122 secA preprotein trans 99.7 2.2E-15 4.8E-20 163.0 24.9 131 36-181 73-209 (870)
130 PRK08074 bifunctional ATP-depe 99.7 2.6E-15 5.7E-20 170.7 26.9 108 265-395 751-892 (928)
131 PF00271 Helicase_C: Helicase 99.7 3.3E-17 7.1E-22 129.5 7.8 78 284-384 1-78 (78)
132 KOG0385|consensus 99.7 3.5E-15 7.6E-20 155.6 24.0 312 39-393 166-594 (971)
133 cd00046 DEXDc DEAD-like helica 99.7 1.3E-15 2.9E-20 133.8 15.5 144 56-209 1-144 (144)
134 KOG0925|consensus 99.7 1.1E-14 2.3E-19 144.9 22.8 316 23-398 30-389 (699)
135 COG4889 Predicted helicase [Ge 99.7 5.1E-17 1.1E-21 170.6 6.2 320 37-393 158-585 (1518)
136 KOG0387|consensus 99.7 1.8E-14 3.9E-19 151.1 23.5 312 39-392 204-652 (923)
137 KOG1123|consensus 99.6 1.1E-15 2.4E-20 152.3 12.4 295 39-384 301-635 (776)
138 PRK12902 secA preprotein trans 99.6 7.2E-14 1.6E-18 151.1 25.3 131 36-181 82-218 (939)
139 KOG0390|consensus 99.6 1.2E-13 2.6E-18 148.5 24.9 319 40-392 238-701 (776)
140 PF04851 ResIII: Type III rest 99.6 4.3E-15 9.4E-20 137.4 12.3 152 40-210 3-183 (184)
141 KOG0951|consensus 99.6 2.2E-14 4.7E-19 156.3 17.3 309 41-400 1144-1498(1674)
142 PRK11747 dinG ATP-dependent DN 99.6 8.5E-13 1.8E-17 145.8 30.3 65 37-109 23-96 (697)
143 KOG1000|consensus 99.5 5.4E-13 1.2E-17 133.3 19.3 308 39-392 197-597 (689)
144 PRK14873 primosome assembly pr 99.5 2.5E-13 5.5E-18 147.4 18.1 137 59-216 164-310 (665)
145 smart00490 HELICc helicase sup 99.5 3.2E-14 7E-19 113.0 7.9 81 281-384 2-82 (82)
146 COG1199 DinG Rad3-related DNA 99.5 2.6E-12 5.6E-17 142.7 23.1 71 36-113 11-85 (654)
147 PF06862 DUF1253: Protein of u 99.5 1.3E-11 2.8E-16 126.3 24.5 236 143-400 131-419 (442)
148 TIGR02562 cas3_yersinia CRISPR 99.5 1.4E-12 3.1E-17 143.2 18.4 309 42-385 410-881 (1110)
149 TIGR00604 rad3 DNA repair heli 99.5 1.8E-11 3.9E-16 136.3 27.4 74 37-115 7-84 (705)
150 KOG0384|consensus 99.4 3.6E-13 7.7E-18 147.3 11.6 318 39-396 369-811 (1373)
151 KOG0392|consensus 99.4 1.1E-11 2.3E-16 135.4 21.9 318 41-392 976-1448(1549)
152 KOG0389|consensus 99.4 1.1E-11 2.3E-16 130.5 20.5 122 252-396 762-888 (941)
153 PRK12901 secA preprotein trans 99.4 2.1E-11 4.5E-16 133.6 20.0 124 249-397 610-742 (1112)
154 PF07652 Flavi_DEAD: Flaviviru 99.3 2.8E-12 6.1E-17 110.1 6.4 136 54-213 3-140 (148)
155 PF02399 Herpes_ori_bp: Origin 99.2 7.3E-10 1.6E-14 119.4 20.5 291 56-396 50-388 (824)
156 KOG2340|consensus 99.2 2.9E-10 6.4E-15 114.9 15.0 338 39-398 215-670 (698)
157 smart00489 DEXDc3 DEAD-like he 99.2 3.9E-10 8.4E-15 111.8 13.2 73 40-114 8-84 (289)
158 smart00488 DEXDc2 DEAD-like he 99.2 3.9E-10 8.4E-15 111.8 13.2 73 40-114 8-84 (289)
159 KOG0386|consensus 99.1 5.9E-10 1.3E-14 120.3 13.5 315 38-394 392-834 (1157)
160 KOG0921|consensus 99.1 1.6E-09 3.4E-14 115.5 15.8 333 46-422 384-800 (1282)
161 PF00176 SNF2_N: SNF2 family N 99.0 5.9E-09 1.3E-13 104.3 15.0 146 55-210 25-173 (299)
162 COG0653 SecA Preprotein transl 99.0 1.1E-08 2.3E-13 111.2 17.6 130 37-181 78-213 (822)
163 KOG1002|consensus 99.0 7.5E-08 1.6E-12 96.9 20.7 110 266-397 638-750 (791)
164 KOG4439|consensus 98.9 4.2E-08 9.1E-13 102.6 17.4 104 265-390 745-850 (901)
165 COG0553 HepA Superfamily II DN 98.9 1.1E-07 2.4E-12 109.6 20.3 119 251-392 692-816 (866)
166 COG0610 Type I site-specific r 98.9 2E-07 4.4E-12 106.2 21.5 140 56-211 274-415 (962)
167 PF07517 SecA_DEAD: SecA DEAD- 98.8 6.9E-08 1.5E-12 93.4 12.6 132 35-181 73-210 (266)
168 KOG0388|consensus 98.7 7.8E-07 1.7E-11 93.2 16.6 115 251-388 1028-1144(1185)
169 KOG1015|consensus 98.6 2.9E-06 6.2E-11 91.6 18.9 117 252-391 1127-1270(1567)
170 PRK15483 type III restriction- 98.5 1.6E-06 3.4E-11 96.7 14.7 146 56-211 60-240 (986)
171 KOG0952|consensus 98.5 6.5E-08 1.4E-12 105.4 3.7 224 40-279 927-1166(1230)
172 PF13086 AAA_11: AAA domain; P 98.4 1.6E-06 3.4E-11 83.2 9.0 72 41-113 2-75 (236)
173 PF13604 AAA_30: AAA domain; P 98.3 5.3E-06 1.1E-10 77.6 9.9 121 40-206 1-128 (196)
174 PF13872 AAA_34: P-loop contai 98.1 3.2E-05 7E-10 75.3 12.5 159 40-213 37-224 (303)
175 PF02562 PhoH: PhoH-like prote 98.1 7.8E-06 1.7E-10 76.1 6.9 143 40-206 4-153 (205)
176 TIGR00596 rad1 DNA repair prot 98.0 3.6E-05 7.7E-10 85.9 12.3 66 142-208 6-71 (814)
177 PF12340 DUF3638: Protein of u 98.0 5.9E-05 1.3E-09 70.9 11.2 138 37-183 21-187 (229)
178 KOG1803|consensus 97.8 4.3E-05 9.3E-10 79.8 7.9 65 40-112 185-250 (649)
179 PRK10536 hypothetical protein; 97.8 0.00038 8.3E-09 66.7 13.8 146 37-205 56-209 (262)
180 KOG1802|consensus 97.8 8E-05 1.7E-09 78.2 9.3 77 32-115 402-478 (935)
181 PRK10875 recD exonuclease V su 97.8 0.00039 8.5E-09 75.7 15.0 140 42-206 154-299 (615)
182 PF09848 DUF2075: Uncharacteri 97.8 0.00011 2.5E-09 75.2 9.7 108 57-195 3-117 (352)
183 PF13245 AAA_19: Part of AAA d 97.7 0.00011 2.3E-09 57.2 6.7 60 48-111 2-62 (76)
184 TIGR01447 recD exodeoxyribonuc 97.7 0.00061 1.3E-08 74.0 14.1 141 42-206 147-293 (586)
185 TIGR01448 recD_rel helicase, p 97.7 0.00062 1.3E-08 76.1 14.0 128 34-206 318-450 (720)
186 PF13307 Helicase_C_2: Helicas 97.6 5.9E-05 1.3E-09 68.6 4.7 107 265-394 8-148 (167)
187 KOG0391|consensus 97.6 0.00026 5.7E-09 78.6 9.5 154 40-209 615-775 (1958)
188 KOG0391|consensus 97.5 0.00063 1.4E-08 75.7 11.3 124 250-396 1259-1387(1958)
189 KOG1016|consensus 97.5 0.0019 4.1E-08 69.2 14.3 106 266-394 719-845 (1387)
190 PRK13889 conjugal transfer rel 97.5 0.0013 2.9E-08 74.9 14.0 125 35-206 342-468 (988)
191 KOG1132|consensus 97.5 0.00069 1.5E-08 73.8 10.9 139 40-182 21-261 (945)
192 TIGR02768 TraA_Ti Ti-type conj 97.4 0.002 4.2E-08 72.4 14.5 74 25-107 338-412 (744)
193 COG3587 Restriction endonuclea 97.4 0.001 2.2E-08 72.3 10.6 148 57-214 76-247 (985)
194 PF00580 UvrD-helicase: UvrD/R 97.3 0.00064 1.4E-08 68.3 8.4 124 41-178 1-125 (315)
195 PRK06526 transposase; Provisio 97.3 0.0054 1.2E-07 59.6 13.9 66 167-232 158-234 (254)
196 PRK13826 Dtr system oriT relax 97.2 0.006 1.3E-07 70.2 15.4 137 23-206 365-503 (1102)
197 PRK08181 transposase; Validate 97.2 0.012 2.7E-07 57.5 15.3 119 43-213 90-213 (269)
198 PF13401 AAA_22: AAA domain; P 97.2 0.0017 3.6E-08 56.1 8.2 17 55-71 4-20 (131)
199 COG1875 NYN ribonuclease and A 97.1 0.0016 3.5E-08 64.5 8.2 147 36-206 224-385 (436)
200 KOG1805|consensus 97.1 0.0018 3.8E-08 71.4 8.6 137 24-183 657-811 (1100)
201 TIGR00376 DNA helicase, putati 97.0 0.0027 5.7E-08 70.0 8.9 66 40-113 157-223 (637)
202 PRK04296 thymidine kinase; Pro 96.9 0.0023 4.9E-08 59.5 6.5 37 55-99 2-38 (190)
203 cd00009 AAA The AAA+ (ATPases 96.9 0.012 2.6E-07 51.2 10.9 16 55-70 19-34 (151)
204 PRK08727 hypothetical protein; 96.8 0.018 3.8E-07 55.4 12.1 47 167-213 92-140 (233)
205 PF14617 CMS1: U3-containing 9 96.7 0.0028 6.2E-08 60.8 6.0 86 89-178 124-211 (252)
206 PHA02533 17 large terminase pr 96.7 0.037 8.1E-07 59.6 14.6 150 40-209 59-210 (534)
207 PRK08116 hypothetical protein; 96.6 0.02 4.3E-07 56.3 11.2 40 57-105 116-155 (268)
208 PRK06921 hypothetical protein; 96.6 0.035 7.5E-07 54.5 12.9 45 54-106 116-160 (266)
209 PRK14722 flhF flagellar biosyn 96.6 0.019 4.1E-07 58.7 11.0 131 55-220 137-269 (374)
210 smart00492 HELICc3 helicase su 96.5 0.011 2.4E-07 52.0 7.8 77 295-394 26-136 (141)
211 PRK07952 DNA replication prote 96.5 0.061 1.3E-06 51.9 13.6 48 167-214 161-210 (244)
212 PF05970 PIF1: PIF1-like helic 96.5 0.011 2.3E-07 61.0 8.9 59 41-107 2-66 (364)
213 PHA03333 putative ATPase subun 96.4 0.13 2.9E-06 55.8 16.7 151 42-211 171-334 (752)
214 smart00382 AAA ATPases associa 96.4 0.0067 1.5E-07 52.3 6.1 41 55-103 2-42 (148)
215 PRK12377 putative replication 96.4 0.032 7E-07 53.9 11.0 43 56-107 102-144 (248)
216 PRK09183 transposase/IS protei 96.4 0.13 2.8E-06 50.3 15.2 21 52-72 99-119 (259)
217 smart00491 HELICc2 helicase su 96.4 0.0096 2.1E-07 52.4 6.5 68 304-394 32-137 (142)
218 PRK05642 DNA replication initi 96.3 0.024 5.2E-07 54.5 9.3 45 167-211 96-141 (234)
219 TIGR02760 TraI_TIGR conjugativ 96.3 0.26 5.7E-06 61.2 20.2 228 40-307 429-678 (1960)
220 PRK10919 ATP-dependent DNA hel 96.3 0.02 4.4E-07 63.8 10.0 70 40-115 2-71 (672)
221 KOG1131|consensus 96.2 0.073 1.6E-06 55.2 12.5 73 39-115 15-91 (755)
222 cd01120 RecA-like_NTPases RecA 96.2 0.052 1.1E-06 48.3 10.6 38 58-103 2-39 (165)
223 PRK12723 flagellar biosynthesi 96.2 0.068 1.5E-06 55.1 12.5 130 56-220 175-309 (388)
224 COG1419 FlhF Flagellar GTP-bin 96.2 0.099 2.1E-06 53.4 13.4 131 55-220 203-335 (407)
225 TIGR03420 DnaA_homol_Hda DnaA 96.2 0.051 1.1E-06 51.8 11.0 18 55-72 38-55 (226)
226 PHA03368 DNA packaging termina 96.1 0.077 1.7E-06 57.4 12.9 139 54-213 253-394 (738)
227 PRK11889 flhF flagellar biosyn 96.1 0.084 1.8E-06 54.0 12.6 128 56-220 242-374 (436)
228 PRK06835 DNA replication prote 96.1 0.12 2.6E-06 52.2 13.7 58 40-106 160-225 (329)
229 PRK11054 helD DNA helicase IV; 96.0 0.057 1.2E-06 60.0 12.1 71 39-115 195-265 (684)
230 PRK14974 cell division protein 96.0 0.057 1.2E-06 54.6 10.9 54 167-220 221-275 (336)
231 PRK06893 DNA replication initi 96.0 0.027 6E-07 53.9 8.1 46 167-212 90-137 (229)
232 PRK05703 flhF flagellar biosyn 95.9 0.34 7.4E-06 50.8 16.3 128 55-220 221-354 (424)
233 cd01124 KaiC KaiC is a circadi 95.8 0.051 1.1E-06 50.0 9.1 48 58-114 2-49 (187)
234 KOG0989|consensus 95.8 0.022 4.8E-07 55.4 6.4 42 167-209 128-169 (346)
235 TIGR01074 rep ATP-dependent DN 95.8 0.053 1.2E-06 60.7 10.5 69 41-115 2-70 (664)
236 COG3421 Uncharacterized protei 95.7 0.046 9.9E-07 57.7 8.7 143 60-212 2-168 (812)
237 TIGR02785 addA_Gpos recombinat 95.7 0.043 9.4E-07 65.4 9.7 124 41-179 2-126 (1232)
238 TIGR01075 uvrD DNA helicase II 95.6 0.028 6E-07 63.4 7.6 72 39-116 3-74 (715)
239 PF00308 Bac_DnaA: Bacterial d 95.6 0.11 2.4E-06 49.4 10.5 107 57-213 36-144 (219)
240 PRK00149 dnaA chromosomal repl 95.6 0.059 1.3E-06 57.3 9.6 44 56-106 149-192 (450)
241 COG1484 DnaC DNA replication p 95.6 0.086 1.9E-06 51.3 9.8 66 37-111 80-152 (254)
242 PRK08084 DNA replication initi 95.5 0.058 1.3E-06 51.9 8.4 42 168-210 97-141 (235)
243 PRK14712 conjugal transfer nic 95.5 0.1 2.3E-06 62.4 11.8 64 40-107 835-900 (1623)
244 PRK11331 5-methylcytosine-spec 95.5 0.073 1.6E-06 55.5 9.3 32 41-72 180-211 (459)
245 PF03354 Terminase_1: Phage Te 95.5 0.11 2.3E-06 55.7 11.1 72 43-118 1-81 (477)
246 PRK11773 uvrD DNA-dependent he 95.4 0.041 8.9E-07 62.1 8.0 72 39-116 8-79 (721)
247 PHA02544 44 clamp loader, smal 95.4 0.084 1.8E-06 53.2 9.5 41 167-207 99-139 (316)
248 PRK12422 chromosomal replicati 95.4 0.13 2.7E-06 54.4 10.9 50 167-216 201-252 (445)
249 PRK10917 ATP-dependent DNA hel 95.4 0.073 1.6E-06 59.6 9.6 83 258-362 302-388 (681)
250 TIGR00362 DnaA chromosomal rep 95.3 0.08 1.7E-06 55.4 9.3 36 57-98 138-173 (405)
251 PRK13709 conjugal transfer nic 95.3 0.14 3E-06 62.2 12.1 64 40-107 967-1032(1747)
252 PRK13894 conjugal transfer ATP 95.2 0.06 1.3E-06 54.1 7.7 66 30-103 124-190 (319)
253 PRK13833 conjugal transfer pro 95.2 0.068 1.5E-06 53.7 8.0 64 32-103 122-186 (323)
254 PTZ00112 origin recognition co 95.2 0.3 6.5E-06 54.7 13.4 27 167-194 868-894 (1164)
255 PF13871 Helicase_C_4: Helicas 95.1 0.038 8.3E-07 53.9 5.7 64 307-393 52-124 (278)
256 TIGR01547 phage_term_2 phage t 95.1 0.1 2.2E-06 54.5 9.3 144 58-220 4-151 (396)
257 PF00448 SRP54: SRP54-type pro 95.1 0.31 6.7E-06 45.4 11.5 123 58-214 4-130 (196)
258 PHA03372 DNA packaging termina 95.0 0.2 4.2E-06 53.7 10.9 133 54-211 201-339 (668)
259 cd01122 GP4d_helicase GP4d_hel 95.0 0.072 1.6E-06 52.4 7.5 77 28-112 3-79 (271)
260 PRK14723 flhF flagellar biosyn 95.0 0.61 1.3E-05 52.1 15.1 130 55-220 185-317 (767)
261 PRK14087 dnaA chromosomal repl 95.0 0.18 3.8E-06 53.5 10.7 109 57-213 143-253 (450)
262 PRK14088 dnaA chromosomal repl 95.0 0.23 5E-06 52.5 11.5 37 57-99 132-168 (440)
263 PF00004 AAA: ATPase family as 94.9 0.23 5E-06 42.4 9.6 16 169-184 59-74 (132)
264 COG1444 Predicted P-loop ATPas 94.9 0.69 1.5E-05 51.2 15.0 157 25-210 199-357 (758)
265 PF05621 TniB: Bacterial TniB 94.9 0.18 4E-06 49.6 9.6 112 56-201 62-180 (302)
266 PRK14086 dnaA chromosomal repl 94.8 0.15 3.3E-06 55.3 9.8 48 167-214 376-425 (617)
267 PRK00411 cdc6 cell division co 94.8 0.19 4.1E-06 52.3 10.3 24 56-80 56-79 (394)
268 KOG0991|consensus 94.8 0.071 1.5E-06 49.9 6.0 44 167-211 112-155 (333)
269 TIGR02688 conserved hypothetic 94.7 0.16 3.5E-06 52.3 9.2 51 22-73 169-227 (449)
270 TIGR00643 recG ATP-dependent D 94.7 0.12 2.5E-06 57.4 8.9 83 258-362 276-362 (630)
271 PRK08903 DnaA regulatory inact 94.7 0.15 3.3E-06 48.6 8.7 44 167-211 89-133 (227)
272 PRK05986 cob(I)alamin adenolsy 94.7 0.091 2E-06 48.3 6.6 145 54-219 21-168 (191)
273 PRK05580 primosome assembly pr 94.6 0.2 4.3E-06 56.0 10.4 59 266-324 190-249 (679)
274 TIGR02782 TrbB_P P-type conjug 94.6 0.17 3.6E-06 50.6 8.8 66 30-103 108-174 (299)
275 PRK06731 flhF flagellar biosyn 94.6 0.54 1.2E-05 46.1 12.2 69 150-220 138-208 (270)
276 TIGR01073 pcrA ATP-dependent D 94.6 0.1 2.2E-06 59.0 8.1 72 39-116 3-74 (726)
277 PRK12726 flagellar biosynthesi 94.5 0.57 1.2E-05 47.9 12.4 19 55-73 206-224 (407)
278 PF05127 Helicase_RecD: Helica 94.5 0.034 7.3E-07 50.6 3.4 124 59-210 1-124 (177)
279 KOG0298|consensus 94.5 0.19 4.1E-06 57.5 9.8 155 55-216 374-557 (1394)
280 PRK08769 DNA polymerase III su 94.5 0.25 5.5E-06 49.6 9.8 43 39-82 3-52 (319)
281 PRK05707 DNA polymerase III su 94.5 0.081 1.8E-06 53.5 6.4 41 41-82 4-48 (328)
282 COG3973 Superfamily I DNA and 94.4 0.29 6.4E-06 52.0 10.3 89 26-116 191-285 (747)
283 PRK08939 primosomal protein Dn 94.4 0.41 9E-06 47.9 11.2 47 167-213 216-265 (306)
284 KOG1001|consensus 94.4 0.26 5.7E-06 54.4 10.5 139 57-210 154-293 (674)
285 TIGR03015 pepcterm_ATPase puta 94.4 0.41 8.8E-06 46.9 11.1 32 40-71 23-59 (269)
286 PRK14958 DNA polymerase III su 94.4 0.27 5.8E-06 52.9 10.4 39 167-206 118-156 (509)
287 PLN03025 replication factor C 94.3 0.2 4.3E-06 50.6 8.9 38 167-205 98-135 (319)
288 PRK13851 type IV secretion sys 94.3 0.068 1.5E-06 54.3 5.4 44 51-103 158-201 (344)
289 COG2909 MalT ATP-dependent tra 94.3 0.16 3.5E-06 56.1 8.4 43 169-211 130-172 (894)
290 TIGR03877 thermo_KaiC_1 KaiC d 94.2 0.092 2E-06 50.6 5.9 52 55-115 21-72 (237)
291 PRK07764 DNA polymerase III su 94.2 0.16 3.4E-06 57.7 8.5 39 167-206 119-157 (824)
292 PRK12402 replication factor C 94.2 0.25 5.3E-06 50.2 9.4 39 167-206 124-162 (337)
293 COG2109 BtuR ATP:corrinoid ade 94.1 0.36 7.8E-06 43.9 8.9 143 58-220 31-176 (198)
294 TIGR02760 TraI_TIGR conjugativ 94.1 0.21 4.5E-06 62.1 9.8 64 40-107 1019-1084(1960)
295 PRK12727 flagellar biosynthesi 94.0 1.7 3.6E-05 46.6 15.1 19 54-72 349-367 (559)
296 PRK13900 type IV secretion sys 94.0 0.16 3.6E-06 51.4 7.5 43 52-103 157-199 (332)
297 TIGR00595 priA primosomal prot 94.0 0.3 6.5E-06 52.5 9.8 60 265-324 24-84 (505)
298 PRK06904 replicative DNA helic 94.0 0.5 1.1E-05 50.4 11.3 117 55-184 221-350 (472)
299 PRK09112 DNA polymerase III su 93.9 0.44 9.5E-06 48.7 10.4 39 167-206 140-178 (351)
300 TIGR00580 mfd transcription-re 93.9 0.22 4.8E-06 57.2 9.0 76 265-362 499-578 (926)
301 PF13177 DNA_pol3_delta2: DNA 93.8 0.15 3.2E-06 46.0 6.1 47 167-214 101-147 (162)
302 TIGR03499 FlhF flagellar biosy 93.8 0.32 6.9E-06 48.2 9.0 17 56-72 195-211 (282)
303 COG0470 HolB ATPase involved i 93.8 0.29 6.2E-06 49.3 8.9 39 167-206 108-146 (325)
304 cd00984 DnaB_C DnaB helicase C 93.8 0.2 4.3E-06 48.2 7.4 38 54-98 12-49 (242)
305 PRK14961 DNA polymerase III su 93.7 0.086 1.9E-06 54.3 5.0 39 167-206 118-156 (363)
306 COG4962 CpaF Flp pilus assembl 93.7 0.11 2.3E-06 51.8 5.3 60 36-104 153-213 (355)
307 PRK11034 clpA ATP-dependent Cl 93.7 0.57 1.2E-05 52.8 11.6 45 169-213 279-327 (758)
308 PRK14873 primosome assembly pr 93.7 0.49 1.1E-05 52.4 11.0 75 250-324 171-248 (665)
309 TIGR00708 cobA cob(I)alamin ad 93.6 0.37 8E-06 43.7 8.3 53 167-219 96-150 (173)
310 PF05729 NACHT: NACHT domain 93.6 0.44 9.5E-06 42.4 9.0 45 57-105 2-47 (166)
311 TIGR02881 spore_V_K stage V sp 93.6 0.42 9.1E-06 46.7 9.5 17 56-72 43-59 (261)
312 KOG1133|consensus 93.6 0.99 2.1E-05 48.8 12.4 106 265-394 628-778 (821)
313 PHA00729 NTP-binding motif con 93.6 0.59 1.3E-05 44.3 9.9 73 145-218 60-137 (226)
314 PRK07003 DNA polymerase III su 93.6 0.28 6.1E-06 54.3 8.7 39 167-206 118-156 (830)
315 PF06745 KaiC: KaiC; InterPro 93.6 0.081 1.8E-06 50.5 4.2 132 55-209 19-160 (226)
316 PRK12724 flagellar biosynthesi 93.5 1.2 2.7E-05 46.2 12.8 54 167-220 298-356 (432)
317 PF13173 AAA_14: AAA domain 93.5 0.5 1.1E-05 40.6 8.7 38 168-208 61-98 (128)
318 PRK04195 replication factor C 93.5 0.29 6.3E-06 52.5 8.8 17 55-71 39-55 (482)
319 PRK11823 DNA repair protein Ra 93.5 0.36 7.7E-06 51.1 9.2 57 49-114 69-130 (446)
320 PRK14952 DNA polymerase III su 93.5 0.061 1.3E-06 58.5 3.5 39 167-206 117-155 (584)
321 cd00561 CobA_CobO_BtuR ATP:cor 93.4 0.74 1.6E-05 41.2 9.7 52 167-218 94-147 (159)
322 cd01130 VirB11-like_ATPase Typ 93.4 0.2 4.3E-06 46.2 6.4 37 33-71 4-41 (186)
323 PRK08533 flagellar accessory p 93.3 0.7 1.5E-05 44.3 10.2 52 54-114 23-74 (230)
324 COG1474 CDC6 Cdc6-related prot 93.3 1.2 2.6E-05 45.8 12.4 26 56-82 43-68 (366)
325 TIGR02928 orc1/cdc6 family rep 93.3 0.85 1.9E-05 46.8 11.5 24 56-80 41-64 (365)
326 PRK08691 DNA polymerase III su 93.3 0.55 1.2E-05 51.7 10.3 39 167-206 118-156 (709)
327 KOG1133|consensus 93.2 0.12 2.7E-06 55.4 5.1 42 40-81 15-60 (821)
328 PRK14956 DNA polymerase III su 93.2 0.28 6E-06 51.8 7.7 16 58-73 43-58 (484)
329 PF01695 IstB_IS21: IstB-like 93.2 0.18 4E-06 46.2 5.7 44 54-106 46-89 (178)
330 COG1110 Reverse gyrase [DNA re 93.1 0.34 7.3E-06 54.6 8.4 71 253-324 113-189 (1187)
331 PRK06995 flhF flagellar biosyn 93.1 0.43 9.3E-06 50.6 9.0 20 55-74 256-275 (484)
332 cd01121 Sms Sms (bacterial rad 93.1 0.56 1.2E-05 48.3 9.6 51 55-114 82-132 (372)
333 PRK14964 DNA polymerase III su 93.1 0.63 1.4E-05 49.5 10.2 39 167-206 115-153 (491)
334 TIGR03881 KaiC_arch_4 KaiC dom 93.0 0.95 2E-05 43.2 10.7 52 54-114 19-70 (229)
335 PRK00771 signal recognition pa 93.0 0.79 1.7E-05 48.2 10.7 49 169-217 176-225 (437)
336 PRK07994 DNA polymerase III su 92.8 0.71 1.5E-05 50.8 10.5 38 167-205 118-155 (647)
337 PRK09111 DNA polymerase III su 92.8 0.3 6.6E-06 53.4 7.6 39 167-206 131-169 (598)
338 CHL00181 cbbX CbbX; Provisiona 92.8 1.6 3.5E-05 43.2 12.1 18 55-72 59-76 (287)
339 COG1200 RecG RecG-like helicas 92.7 0.61 1.3E-05 50.6 9.5 89 253-363 298-390 (677)
340 PRK08699 DNA polymerase III su 92.7 0.48 1E-05 47.9 8.4 39 42-81 3-46 (325)
341 COG1198 PriA Primosomal protei 92.4 0.48 1E-05 52.6 8.5 78 247-324 225-304 (730)
342 PRK05896 DNA polymerase III su 92.4 0.6 1.3E-05 50.8 9.0 39 167-206 118-156 (605)
343 TIGR02525 plasmid_TraJ plasmid 92.4 0.4 8.7E-06 49.2 7.4 44 32-81 131-174 (372)
344 TIGR03600 phage_DnaB phage rep 92.3 0.79 1.7E-05 48.3 9.9 37 55-98 194-230 (421)
345 PRK08840 replicative DNA helic 92.3 1.1 2.3E-05 47.7 10.8 114 55-181 217-342 (464)
346 PRK06871 DNA polymerase III su 92.3 0.73 1.6E-05 46.4 9.0 41 167-208 106-146 (325)
347 PRK07940 DNA polymerase III su 92.2 0.23 5E-06 51.5 5.5 43 167-211 116-158 (394)
348 PF03796 DnaB_C: DnaB-like hel 92.2 0.48 1E-05 46.2 7.5 141 55-208 19-179 (259)
349 PRK14960 DNA polymerase III su 92.2 0.51 1.1E-05 51.6 8.1 39 167-206 117-155 (702)
350 PRK07399 DNA polymerase III su 92.1 1.1 2.4E-05 45.0 10.1 59 146-208 104-162 (314)
351 PRK12323 DNA polymerase III su 92.0 0.36 7.8E-06 52.7 6.8 40 167-207 123-162 (700)
352 COG1435 Tdk Thymidine kinase [ 92.0 0.23 5E-06 45.5 4.6 104 55-195 4-108 (201)
353 PRK14949 DNA polymerase III su 92.0 0.081 1.8E-06 59.5 2.0 38 167-205 118-155 (944)
354 PF05496 RuvB_N: Holliday junc 92.0 0.31 6.8E-06 45.9 5.5 16 57-72 52-67 (233)
355 TIGR03819 heli_sec_ATPase heli 91.9 0.37 8.1E-06 49.0 6.6 63 30-103 154-217 (340)
356 PF03237 Terminase_6: Terminas 91.9 3.6 7.9E-05 41.9 14.1 145 59-224 1-154 (384)
357 PRK10689 transcription-repair 91.9 0.64 1.4E-05 54.9 9.2 60 265-324 648-711 (1147)
358 PRK08006 replicative DNA helic 91.9 1.4 3E-05 47.0 11.0 115 55-182 224-350 (471)
359 PRK04328 hypothetical protein; 91.8 0.47 1E-05 46.1 6.9 53 54-115 22-74 (249)
360 COG2804 PulE Type II secretory 91.8 0.37 8E-06 50.6 6.4 39 42-81 243-283 (500)
361 PRK14957 DNA polymerase III su 91.8 0.27 5.8E-06 53.1 5.6 39 167-206 118-156 (546)
362 PRK14965 DNA polymerase III su 91.8 0.72 1.6E-05 50.5 9.0 39 167-206 118-156 (576)
363 TIGR03878 thermo_KaiC_2 KaiC d 91.8 1.8 3.8E-05 42.3 10.9 37 54-98 35-71 (259)
364 TIGR02639 ClpA ATP-dependent C 91.8 1.4 3.1E-05 49.8 11.6 16 56-71 204-219 (731)
365 PRK14721 flhF flagellar biosyn 91.6 1.7 3.6E-05 45.4 11.0 131 55-220 191-323 (420)
366 PRK07471 DNA polymerase III su 91.6 1.2 2.6E-05 45.8 9.9 136 57-209 43-181 (365)
367 PRK13342 recombination factor 91.6 1.1 2.3E-05 47.1 9.8 38 168-210 92-129 (413)
368 cd01129 PulE-GspE PulE/GspE Th 91.5 0.5 1.1E-05 46.3 6.8 45 32-80 58-104 (264)
369 PRK14969 DNA polymerase III su 91.5 1.2 2.5E-05 48.4 10.1 39 167-206 118-156 (527)
370 PLN00020 ribulose bisphosphate 91.3 0.76 1.7E-05 46.7 7.8 60 12-71 84-164 (413)
371 TIGR03346 chaperone_ClpB ATP-d 91.2 1.8 3.9E-05 49.9 11.8 46 169-214 267-315 (852)
372 PRK06067 flagellar accessory p 91.2 1.1 2.5E-05 42.8 8.9 52 55-115 25-76 (234)
373 PRK05563 DNA polymerase III su 91.2 1.4 2.9E-05 48.2 10.3 33 167-200 118-150 (559)
374 PRK14951 DNA polymerase III su 91.1 0.47 1E-05 52.0 6.6 39 167-206 123-161 (618)
375 COG0630 VirB11 Type IV secreto 91.1 0.42 9.1E-06 48.0 5.9 56 39-103 126-182 (312)
376 PRK10865 protein disaggregatio 91.1 1.8 3.8E-05 49.9 11.5 44 170-213 273-319 (857)
377 COG4626 Phage terminase-like p 91.1 1.6 3.4E-05 46.5 10.1 148 40-207 61-223 (546)
378 COG0593 DnaA ATPase involved i 91.1 0.66 1.4E-05 47.9 7.3 47 168-214 175-223 (408)
379 PRK14953 DNA polymerase III su 91.0 0.43 9.3E-06 51.0 6.2 33 167-200 118-150 (486)
380 PRK06645 DNA polymerase III su 91.0 1.8 4E-05 46.4 10.8 18 57-74 45-62 (507)
381 PF06733 DEAD_2: DEAD_2; Inte 91.0 0.14 3.1E-06 46.6 2.2 43 141-183 117-160 (174)
382 PTZ00293 thymidine kinase; Pro 90.9 1.4 3E-05 41.3 8.7 39 55-101 4-42 (211)
383 KOG0701|consensus 90.8 0.13 2.8E-06 61.1 2.1 94 268-384 294-399 (1606)
384 PRK00440 rfc replication facto 90.7 2.6 5.6E-05 42.2 11.3 39 167-206 101-139 (319)
385 PRK07993 DNA polymerase III su 90.6 0.98 2.1E-05 45.8 8.1 41 41-82 3-50 (334)
386 PRK13341 recombination factor 90.6 1.5 3.3E-05 49.2 10.2 40 168-212 109-148 (725)
387 TIGR00678 holB DNA polymerase 90.5 1.3 2.8E-05 40.8 8.2 38 167-205 95-132 (188)
388 PF03969 AFG1_ATPase: AFG1-lik 90.5 2.9 6.3E-05 42.9 11.4 110 55-213 62-172 (362)
389 PRK08506 replicative DNA helic 90.5 1.6 3.6E-05 46.5 10.0 113 55-182 192-316 (472)
390 PRK10436 hypothetical protein; 90.4 0.63 1.4E-05 49.3 6.6 45 32-80 196-242 (462)
391 PF05876 Terminase_GpA: Phage 90.4 0.79 1.7E-05 49.9 7.6 72 40-118 16-90 (557)
392 PF00437 T2SE: Type II/IV secr 90.3 0.2 4.3E-06 49.2 2.8 53 43-103 114-167 (270)
393 PF01637 Arch_ATPase: Archaeal 90.3 0.92 2E-05 42.9 7.3 57 148-209 103-165 (234)
394 PRK07004 replicative DNA helic 90.3 1.1 2.3E-05 47.8 8.3 37 55-98 213-249 (460)
395 PF02572 CobA_CobO_BtuR: ATP:c 90.3 2.6 5.7E-05 38.2 9.6 139 58-218 6-148 (172)
396 TIGR00064 ftsY signal recognit 90.2 4.8 0.0001 39.6 12.3 49 167-215 153-208 (272)
397 TIGR03345 VI_ClpV1 type VI sec 90.2 2.6 5.7E-05 48.4 11.8 16 56-71 209-224 (852)
398 KOG1513|consensus 90.2 0.19 4.1E-06 54.8 2.5 154 40-208 264-453 (1300)
399 PRK05748 replicative DNA helic 90.0 1.2 2.5E-05 47.4 8.4 113 55-181 203-327 (448)
400 TIGR02858 spore_III_AA stage I 90.0 1.6 3.5E-05 42.8 8.7 24 47-70 100-126 (270)
401 TIGR00614 recQ_fam ATP-depende 89.9 1.5 3.3E-05 46.9 9.3 60 266-325 51-110 (470)
402 PRK05973 replicative DNA helic 89.9 0.58 1.3E-05 44.9 5.4 83 23-115 23-115 (237)
403 TIGR00665 DnaB replicative DNA 89.9 1.7 3.8E-05 45.8 9.6 113 55-182 195-319 (434)
404 TIGR02397 dnaX_nterm DNA polym 89.9 0.44 9.5E-06 48.8 4.9 23 57-80 38-60 (355)
405 PRK06090 DNA polymerase III su 89.9 1.7 3.6E-05 43.8 8.8 42 167-209 107-148 (319)
406 COG2805 PilT Tfp pilus assembl 89.8 0.68 1.5E-05 45.3 5.7 24 58-82 128-151 (353)
407 PHA00350 putative assembly pro 89.7 1.9 4.1E-05 44.5 9.3 44 167-210 80-146 (399)
408 PRK14963 DNA polymerase III su 89.7 2.1 4.6E-05 46.0 10.0 22 58-80 39-60 (504)
409 KOG0733|consensus 89.7 1.2 2.6E-05 47.8 7.7 99 148-262 586-694 (802)
410 PRK06964 DNA polymerase III su 89.6 1.6 3.4E-05 44.4 8.5 40 42-82 3-47 (342)
411 TIGR02538 type_IV_pilB type IV 89.5 0.76 1.7E-05 50.2 6.6 45 32-80 294-340 (564)
412 TIGR02788 VirB11 P-type DNA tr 89.4 0.37 8E-06 48.4 3.8 18 53-70 142-159 (308)
413 TIGR02533 type_II_gspE general 89.3 0.69 1.5E-05 49.5 5.9 45 32-80 220-266 (486)
414 CHL00095 clpC Clp protease ATP 89.2 2.4 5.1E-05 48.7 10.6 17 56-72 201-217 (821)
415 KOG0741|consensus 89.1 5.7 0.00012 42.0 12.0 69 22-100 493-573 (744)
416 PRK08760 replicative DNA helic 89.1 1.6 3.4E-05 46.7 8.5 112 55-181 229-352 (476)
417 PRK08058 DNA polymerase III su 89.1 1.9 4.1E-05 43.7 8.8 40 167-207 109-148 (329)
418 PRK10867 signal recognition pa 89.1 5.7 0.00012 41.8 12.4 52 167-218 182-234 (433)
419 PRK06321 replicative DNA helic 89.1 2.9 6.2E-05 44.6 10.4 125 41-182 210-350 (472)
420 TIGR01425 SRP54_euk signal rec 89.1 5.9 0.00013 41.5 12.4 51 168-218 182-233 (429)
421 KOG0739|consensus 89.1 5.1 0.00011 39.3 10.9 49 49-109 155-208 (439)
422 COG1219 ClpX ATP-dependent pro 89.0 0.33 7.2E-06 47.7 3.0 25 56-82 98-122 (408)
423 PRK14962 DNA polymerase III su 89.0 0.4 8.6E-06 51.0 3.9 16 58-73 39-54 (472)
424 TIGR02524 dot_icm_DotB Dot/Icm 89.0 1.1 2.5E-05 45.8 7.1 43 31-80 115-158 (358)
425 PF12846 AAA_10: AAA-like doma 88.9 0.63 1.4E-05 46.1 5.2 42 56-105 2-43 (304)
426 cd01126 TraG_VirD4 The TraG/Tr 88.9 0.17 3.7E-06 52.6 1.1 47 57-113 1-47 (384)
427 PRK07414 cob(I)yrinic acid a,c 88.8 1.3 2.8E-05 40.3 6.4 52 167-218 114-167 (178)
428 PRK14955 DNA polymerase III su 88.7 1.9 4E-05 45.0 8.6 18 57-74 40-57 (397)
429 cd01131 PilT Pilus retraction 88.7 0.66 1.4E-05 43.3 4.8 38 58-102 4-41 (198)
430 PRK14950 DNA polymerase III su 88.7 1.7 3.8E-05 47.7 8.8 38 167-205 119-156 (585)
431 PRK04841 transcriptional regul 88.6 3.7 8.1E-05 47.7 12.0 42 170-211 123-164 (903)
432 COG2256 MGS1 ATPase related to 88.4 1.6 3.4E-05 44.6 7.3 16 57-72 50-65 (436)
433 PRK07133 DNA polymerase III su 88.3 1.6 3.4E-05 48.7 7.9 39 167-206 117-155 (725)
434 PF02534 T4SS-DNA_transf: Type 88.2 0.32 7E-06 52.0 2.6 49 56-114 45-93 (469)
435 PF10412 TrwB_AAD_bind: Type I 88.1 0.57 1.2E-05 48.6 4.3 50 51-108 11-60 (386)
436 PF01443 Viral_helicase1: Vira 87.9 0.28 6.1E-06 46.8 1.8 13 58-70 1-13 (234)
437 PF13555 AAA_29: P-loop contai 87.9 0.75 1.6E-05 34.0 3.6 26 54-81 22-47 (62)
438 PRK14959 DNA polymerase III su 87.8 1.7 3.6E-05 47.7 7.7 18 57-74 40-57 (624)
439 PRK05595 replicative DNA helic 87.8 1.1 2.3E-05 47.6 6.2 37 56-99 202-238 (444)
440 PRK13897 type IV secretion sys 87.6 0.3 6.5E-06 53.4 1.9 49 56-114 159-207 (606)
441 PRK13764 ATPase; Provisional 87.6 1.2 2.6E-05 48.6 6.5 26 54-80 256-281 (602)
442 TIGR03689 pup_AAA proteasome A 87.6 2.3 5.1E-05 45.5 8.6 17 55-71 216-232 (512)
443 TIGR00959 ffh signal recogniti 87.5 11 0.00023 39.7 13.2 16 58-73 102-117 (428)
444 TIGR01420 pilT_fam pilus retra 87.4 0.9 2E-05 46.3 5.2 43 54-103 121-163 (343)
445 cd03115 SRP The signal recogni 87.4 8.8 0.00019 34.6 11.3 15 58-72 3-17 (173)
446 KOG0741|consensus 87.2 0.9 2E-05 47.8 5.0 40 167-206 323-376 (744)
447 KOG0742|consensus 87.2 1.1 2.4E-05 45.7 5.4 16 56-71 385-400 (630)
448 TIGR00416 sms DNA repair prote 87.1 3.4 7.4E-05 43.8 9.5 91 55-182 94-184 (454)
449 PRK14701 reverse gyrase; Provi 87.1 2.3 5E-05 52.0 9.0 60 266-325 122-187 (1638)
450 PRK05636 replicative DNA helic 87.0 2.9 6.2E-05 45.0 8.9 35 56-97 266-300 (505)
451 cd01127 TrwB Bacterial conjuga 86.7 0.59 1.3E-05 49.0 3.5 50 49-106 36-85 (410)
452 KOG0732|consensus 86.7 1.3 2.9E-05 50.6 6.4 61 148-210 345-415 (1080)
453 PRK14954 DNA polymerase III su 86.7 1.7 3.6E-05 47.9 7.1 39 167-206 126-164 (620)
454 KOG2028|consensus 86.6 1.7 3.7E-05 43.7 6.3 49 57-113 164-212 (554)
455 TIGR02655 circ_KaiC circadian 86.6 2.2 4.8E-05 45.7 7.9 60 47-115 250-314 (484)
456 PRK00080 ruvB Holliday junctio 86.6 1.7 3.7E-05 44.0 6.7 17 56-72 52-68 (328)
457 PRK05416 glmZ(sRNA)-inactivati 86.3 3.4 7.4E-05 40.9 8.4 27 274-301 258-284 (288)
458 COG1074 RecB ATP-dependent exo 86.3 1.3 2.8E-05 52.7 6.3 61 54-117 15-75 (1139)
459 COG1132 MdlB ABC-type multidru 86.2 1.9 4.2E-05 47.2 7.4 33 167-199 482-514 (567)
460 TIGR02640 gas_vesic_GvpN gas v 86.1 0.76 1.6E-05 45.0 3.7 27 46-72 12-38 (262)
461 PRK13695 putative NTPase; Prov 86.1 11 0.00023 34.1 11.2 17 57-73 2-18 (174)
462 PRK09165 replicative DNA helic 86.1 2.7 5.9E-05 45.2 8.2 118 56-182 218-355 (497)
463 PF14516 AAA_35: AAA-like doma 86.0 1.8 3.9E-05 43.9 6.5 47 43-97 18-65 (331)
464 COG1197 Mfd Transcription-repa 85.8 4 8.6E-05 47.3 9.5 86 255-362 632-721 (1139)
465 cd01393 recA_like RecA is a b 85.7 2.1 4.7E-05 40.5 6.6 44 55-100 19-62 (226)
466 PF02456 Adeno_IVa2: Adenoviru 85.7 1 2.2E-05 44.2 4.1 41 58-104 90-130 (369)
467 KOG2004|consensus 85.7 1.7 3.8E-05 47.4 6.2 48 146-197 487-534 (906)
468 PF10593 Z1: Z1 domain; Inter 85.6 1.5 3.3E-05 42.1 5.5 79 290-396 110-193 (239)
469 PRK14948 DNA polymerase III su 85.6 2.9 6.3E-05 46.2 8.3 24 56-80 39-62 (620)
470 PF01935 DUF87: Domain of unkn 85.5 1.3 2.8E-05 42.2 5.0 42 55-103 23-64 (229)
471 cd03247 ABCC_cytochrome_bd The 85.5 2.7 5.8E-05 38.3 6.9 39 167-206 115-153 (178)
472 TIGR00763 lon ATP-dependent pr 85.3 3 6.5E-05 47.5 8.5 17 55-71 347-363 (775)
473 PHA00012 I assembly protein 85.3 8.6 0.00019 38.5 10.4 23 58-80 4-26 (361)
474 PRK09087 hypothetical protein; 85.3 1.8 4E-05 41.2 5.8 41 170-212 89-130 (226)
475 PF03668 ATP_bind_2: P-loop AT 85.3 3.1 6.8E-05 40.7 7.3 28 274-301 255-282 (284)
476 TIGR02868 CydC thiol reductant 85.3 2.8 6.1E-05 45.5 8.0 25 54-80 360-384 (529)
477 COG0513 SrmB Superfamily II DN 85.2 2.4 5.2E-05 45.8 7.3 52 269-324 102-158 (513)
478 PRK13850 type IV secretion sys 85.2 0.48 1E-05 52.5 2.0 48 56-113 140-187 (670)
479 TIGR03743 SXT_TraD conjugative 85.2 1.6 3.5E-05 48.2 6.1 52 55-114 176-229 (634)
480 cd03239 ABC_SMC_head The struc 84.7 3.5 7.5E-05 37.7 7.1 41 167-207 115-156 (178)
481 COG0467 RAD55 RecA-superfamily 84.5 1.6 3.4E-05 42.6 5.1 53 54-115 22-74 (260)
482 TIGR01243 CDC48 AAA family ATP 84.5 6.5 0.00014 44.6 10.7 17 55-71 212-228 (733)
483 PRK10416 signal recognition pa 84.4 4.8 0.0001 40.5 8.6 47 167-213 195-248 (318)
484 PF04665 Pox_A32: Poxvirus A32 84.4 1.3 2.9E-05 42.4 4.4 35 57-99 15-49 (241)
485 TIGR03754 conj_TOL_TraD conjug 84.4 3 6.5E-05 45.8 7.5 52 55-114 180-233 (643)
486 PRK08451 DNA polymerase III su 84.3 3.1 6.7E-05 44.9 7.5 39 167-206 116-154 (535)
487 PRK14971 DNA polymerase III su 84.3 7.3 0.00016 43.0 10.6 39 167-206 120-158 (614)
488 TIGR01389 recQ ATP-dependent D 84.2 4.8 0.0001 44.4 9.3 61 265-325 52-112 (591)
489 COG1122 CbiO ABC-type cobalt t 84.0 4.8 0.0001 38.6 8.0 32 168-199 156-187 (235)
490 COG0210 UvrD Superfamily I DNA 83.7 2.6 5.6E-05 47.1 7.1 71 40-116 2-72 (655)
491 PHA02244 ATPase-like protein 83.7 0.8 1.7E-05 46.6 2.6 23 49-71 113-135 (383)
492 PF03266 NTPase_1: NTPase; In 83.6 3.7 8E-05 37.1 6.7 28 167-194 94-123 (168)
493 TIGR00767 rho transcription te 83.6 0.83 1.8E-05 47.1 2.7 18 54-71 167-184 (415)
494 TIGR01054 rgy reverse gyrase. 83.0 3.9 8.5E-05 48.6 8.3 59 266-324 121-186 (1171)
495 COG1618 Predicted nucleotide k 82.9 3.4 7.3E-05 36.8 5.8 26 56-82 6-31 (179)
496 PHA02542 41 41 helicase; Provi 82.9 3.8 8.3E-05 43.6 7.5 34 57-98 192-225 (473)
497 PRK05917 DNA polymerase III su 82.8 10 0.00023 37.5 9.9 42 167-209 94-135 (290)
498 cd03221 ABCF_EF-3 ABCF_EF-3 E 82.7 4.7 0.0001 35.3 6.9 39 167-208 87-125 (144)
499 TIGR02784 addA_alphas double-s 82.6 3.4 7.4E-05 49.4 7.8 101 55-160 10-124 (1141)
500 PRK07413 hypothetical protein; 82.6 14 0.00031 37.8 11.1 53 167-219 124-178 (382)
No 1
>KOG0346|consensus
Probab=100.00 E-value=7.4e-109 Score=798.68 Aligned_cols=472 Identities=51% Similarity=0.854 Sum_probs=436.8
Q ss_pred CCc-cCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhccc-ccCCCeEEEE
Q psy16633 19 LPF-TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQT-AQVQETKALV 96 (540)
Q Consensus 19 ~~~-~~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~-~~~~~~~vli 96 (540)
..| +||||++|++|+.++||.+||.+|+.|||.+++|||++++|.||||||+||++|+++.++..+.. ....++.++|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 455 79999999999999999999999999999999999999999999999999999999999987664 4578999999
Q ss_pred EcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcC
Q psy16633 97 LSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDE 176 (540)
Q Consensus 97 l~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDE 176 (540)
+|||+|||+|++..+.++..+|+..++...++.+.+.......+.+.|+|||+||++++.++..+....+..++++|+||
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDE 178 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDE 178 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEech
Confidence 99999999999999999999999899999998877777778899999999999999999999998865559999999999
Q ss_pred ccccccCCcHHHHHHHHHhCCcccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcCcccHHHHH
Q psy16633 177 ADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATIL 256 (540)
Q Consensus 177 ah~l~~~~~~~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~~~k~~~l 256 (540)
||+++++||++++..+.+.+|+.+|+++||||+++++..++++++++|+++.+.+.+.+..+++.||++.|++.+|+.++
T Consensus 179 ADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflll 258 (569)
T KOG0346|consen 179 ADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLL 258 (569)
T ss_pred hhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCcc----CCc-
Q psy16633 257 YTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL----ETP- 331 (540)
Q Consensus 257 ~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~----~~~- 331 (540)
++++++....||+|||||++++||+|..+|++||+++|++||+||.+.|.||+++||.|.|+++||||+++. +++
T Consensus 259 yallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~ 338 (569)
T KOG0346|consen 259 YALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEV 338 (569)
T ss_pred HHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999996643 222
Q ss_pred -------ccccccccccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEEeccccccccccc
Q psy16633 332 -------QINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDG 404 (540)
Q Consensus 332 -------~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e~~~~~~~ 404 (540)
..+..|+++++.|+|++++|||||.+|.+|+|||+|.+..+|+||+|||||++++|.+++|+.|.+...
T Consensus 339 kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g---- 414 (569)
T KOG0346|consen 339 KGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFG---- 414 (569)
T ss_pred cccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhh----
Confidence 133344566688999999999999999999999999999999999999999999999999999998876
Q ss_pred cchhhhhhhhhHHHHHHHHHHhhc-cccccccccccccchhhhhhhhhhHHHHHHh------------------------
Q psy16633 405 TALSFVSLREQDLMNDVNEYLMTN-LHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS------------------------ 459 (540)
Q Consensus 405 ~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~r~~d~~~~------------------------ 459 (540)
...++..+... ..++..+++||+|+++++++|+||++|++++
T Consensus 415 -------------~~~le~~~~d~~~~~~~qilqPY~f~~eevesfryR~eD~~ravTkvAvreaR~kEikqEll~SeKL 481 (569)
T KOG0346|consen 415 -------------KESLESILKDENRQEGRQILQPYQFRMEEVESFRYRAEDALRAVTKVAVREARLKEIKQELLNSEKL 481 (569)
T ss_pred -------------hhHHHHHHhhHHhhcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 45555555442 2234558999999999999999999999998
Q ss_pred -hhcccCcchhhhhccccccccccccCCCCCCCCccCChhhhhcccccc
Q psy16633 460 -NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPPALKKLARIED 507 (540)
Q Consensus 460 -~~f~~~~~~l~~l~~~~~l~~~~~~~~l~~~p~yl~p~~~~~~~~~~~ 507 (540)
+||++||+||.+|+||+++++...+|||+|||+||+|++++++...++
T Consensus 482 K~~FeeNprdl~lLrhDkpl~~~~~qphL~dvpeYlvp~alr~~~~~~k 530 (569)
T KOG0346|consen 482 KAFFEENPRDLQLLRHDKPLRLAIVQPHLKDVPEYLVPEALRGVVKSVK 530 (569)
T ss_pred HHHHhcChHHHHHhhcCCcccccccchhhccCchhhCCHHHhhcccccc
Confidence 999999999999999999999999999999999999999999886654
No 2
>KOG0330|consensus
Probab=100.00 E-value=7.6e-74 Score=548.13 Aligned_cols=383 Identities=31% Similarity=0.523 Sum_probs=358.6
Q ss_pred Cc-cCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEc
Q psy16633 20 PF-TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLS 98 (540)
Q Consensus 20 ~~-~~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~ 98 (540)
.| ++|+++++++++..+||..||++|+++||.++.|+|+|+.|.||||||.+|++|++++|+.. ....+++|++
T Consensus 62 sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~-----p~~~~~lVLt 136 (476)
T KOG0330|consen 62 SFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQE-----PKLFFALVLT 136 (476)
T ss_pred chhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcC-----CCCceEEEec
Confidence 44 89999999999999999999999999999999999999999999999999999999999984 4569999999
Q ss_pred CcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhc-CcCCccCCccEEEEcCc
Q psy16633 99 PSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKA-KTLDLKSSLEIVIIDEA 177 (540)
Q Consensus 99 Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~-~~~~~~~~l~~lViDEa 177 (540)
||||||.|+.+++..++... ++.+..+.||.+...+...+..+|+|+|+|||+|.+++.+ +.+++ ..++++|+|||
T Consensus 137 PtRELA~QI~e~fe~Lg~~i--glr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~l-e~lk~LVlDEA 213 (476)
T KOG0330|consen 137 PTRELAQQIAEQFEALGSGI--GLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSL-EQLKFLVLDEA 213 (476)
T ss_pred CcHHHHHHHHHHHHHhcccc--CeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccH-HHhHHHhhchH
Confidence 99999999999999998866 8999999999999999999999999999999999999995 55666 99999999999
Q ss_pred cccccCCcHHHHHHHHHhCCcccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcCcccHHHHHH
Q psy16633 178 DLVFSFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILY 257 (540)
Q Consensus 178 h~l~~~~~~~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~ 257 (540)
|++++..|.+.+..|++.+|..+|++++|||++..+..+....+.+|+.+...... ...+.++|+|+.++..+|...|.
T Consensus 214 DrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky-~tv~~lkQ~ylfv~~k~K~~yLV 292 (476)
T KOG0330|consen 214 DRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKY-QTVDHLKQTYLFVPGKDKDTYLV 292 (476)
T ss_pred HhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchh-cchHHhhhheEeccccccchhHH
Confidence 99999999999999999999999999999999999999999999999988876553 45678999999999999999999
Q ss_pred HHHHhcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCccccccc
Q psy16633 258 TLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTN 337 (540)
Q Consensus 258 ~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~ 337 (540)
.+++.. .++.+||||++...+..++.+|+..|+.+..+||.|+++.|.-.++.|++|..+||||||
T Consensus 293 ~ll~e~-~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TD------------- 358 (476)
T KOG0330|consen 293 YLLNEL-AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTD------------- 358 (476)
T ss_pred HHHHhh-cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecc-------------
Confidence 999854 468999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEEeccccccccccccchhhhhhhhhHH
Q psy16633 338 NRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDL 417 (540)
Q Consensus 338 ~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e~~~~~~~~~~~~~~~~~~~~ 417 (540)
+.+||+|+|.|++|||||+|.+..+||||+||+||+|.+|.+|++++..|.+.
T Consensus 359 ----------VaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~----------------- 411 (476)
T KOG0330|consen 359 ----------VASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVEL----------------- 411 (476)
T ss_pred ----------hhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHH-----------------
Confidence 89999999999999999999999999999999999999999999999877766
Q ss_pred HHHHHHHHhhccccccccccccccchhhhhhhhhhHHHHHHh
Q psy16633 418 MNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS 459 (540)
Q Consensus 418 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~d~~~~ 459 (540)
+.+||..++.+ +..|+.+.+.+.....|+..+.+.
T Consensus 412 ~qrIE~~~gkk-------l~~~~~~~~~~~~l~erv~eA~~~ 446 (476)
T KOG0330|consen 412 VQRIEHALGKK-------LPEYKVDKNEVMSLNERVAEAQKE 446 (476)
T ss_pred HHHHHHHHhcC-------CCccCcchHHHHHHHHHHHHHHHH
Confidence 99999998876 566788888899999999998876
No 3
>KOG0331|consensus
Probab=100.00 E-value=6.4e-69 Score=547.51 Aligned_cols=353 Identities=28% Similarity=0.430 Sum_probs=329.0
Q ss_pred cCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHh-hcccccCCCeEEEEEcCc
Q psy16633 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIIN-LKQTAQVQETKALVLSPS 100 (540)
Q Consensus 22 ~~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~-~~~~~~~~~~~vlil~Pt 100 (540)
.++|++.+..+++..||..|||||.+.||.++.|+|++..|.||||||++|++|+++++.. ........++++|||+||
T Consensus 95 ~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PT 174 (519)
T KOG0331|consen 95 ELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPT 174 (519)
T ss_pred cccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCc
Confidence 4789999999999999999999999999999999999999999999999999999999986 232334568999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCcccc
Q psy16633 101 KELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLV 180 (540)
Q Consensus 101 ~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l 180 (540)
||||.|+...+..++..+ .+++.+++||.....|...+..+.+|+|+||+++.++++.+.+.+ +.+.++|+||||+|
T Consensus 175 RELA~QV~~~~~~~~~~~--~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l-~~v~ylVLDEADrM 251 (519)
T KOG0331|consen 175 RELAVQVQAEAREFGKSL--RLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNL-SRVTYLVLDEADRM 251 (519)
T ss_pred HHHHHHHHHHHHHHcCCC--CccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccc-cceeEEEeccHHhh
Confidence 999999999999999877 588999999999999999999999999999999999999999998 99999999999999
Q ss_pred ccCCcHHHHHHHHHhC-CcccceeeEeeeccHHHHHHHHHhcCCCeEEEecCC-CCCCCCCeEEEEEEcCcccHHHHHHH
Q psy16633 181 FSFGYEDDMKAVLKFL-PKLYQAILASATLSEDVLSLKHLILRNPVILKLEEP-AIAPVSQLAHYHILAQEDEKATILYT 258 (540)
Q Consensus 181 ~~~~~~~~l~~i~~~l-~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~-~~~~~~~l~~~~~~~~~~~k~~~l~~ 258 (540)
++.||+.+++.|+..+ ++..|++++|||+|.+++.++..++.+|..+.+... .......+.|....++...|...+..
T Consensus 252 ldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~ 331 (519)
T KOG0331|consen 252 LDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGK 331 (519)
T ss_pred hccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHH
Confidence 9999999999999999 455689999999999999999999999998888755 45556778888888999999999888
Q ss_pred HHHhcc--cCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccc
Q psy16633 259 LLKLNL--VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINST 336 (540)
Q Consensus 259 ll~~~~--~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~ 336 (540)
++.... ..+|+||||+++..|..|...|...++++..+||+.+|.+|..+++.|++|.+.||||||
T Consensus 332 lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATd------------ 399 (519)
T KOG0331|consen 332 LLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATD------------ 399 (519)
T ss_pred HHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcc------------
Confidence 887653 677999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEEeccccccc
Q psy16633 337 NNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDL 400 (540)
Q Consensus 337 ~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e~~~ 400 (540)
+++||+|+|+|++|||||+|.+.++|+||+|||||+|+.|.+++|++..+...
T Consensus 400 -----------VAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~ 452 (519)
T KOG0331|consen 400 -----------VAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKL 452 (519)
T ss_pred -----------cccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHH
Confidence 89999999999999999999999999999999999999999999999887766
No 4
>KOG0338|consensus
Probab=100.00 E-value=5.8e-69 Score=529.11 Aligned_cols=381 Identities=32% Similarity=0.527 Sum_probs=339.3
Q ss_pred cCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcH
Q psy16633 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSK 101 (540)
Q Consensus 22 ~~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~ 101 (540)
+++|+..|++++..+||..|||||..+||.++-|||++.+|.||||||+||++|+|..|+-... .....|||||||||
T Consensus 185 ~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk--~~~~TRVLVL~PTR 262 (691)
T KOG0338|consen 185 SMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPK--KVAATRVLVLVPTR 262 (691)
T ss_pred hcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcc--cCcceeEEEEeccH
Confidence 6789999999999999999999999999999999999999999999999999999999986533 25678999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCc-CCccCCccEEEEcCcccc
Q psy16633 102 ELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKT-LDLKSSLEIVIIDEADLV 180 (540)
Q Consensus 102 ~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~-~~~~~~l~~lViDEah~l 180 (540)
||+.|++.+.++++.++ +|.++...||.+...|...+...|||||+|||+|.+|+++.. +.+ +++.++|+||||+|
T Consensus 263 ELaiQv~sV~~qlaqFt--~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~l-dsiEVLvlDEADRM 339 (691)
T KOG0338|consen 263 ELAIQVHSVTKQLAQFT--DITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNL-DSIEVLVLDEADRM 339 (691)
T ss_pred HHHHHHHHHHHHHHhhc--cceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccc-cceeEEEechHHHH
Confidence 99999999999999998 799999999999999999999999999999999999998864 566 99999999999999
Q ss_pred ccCCcHHHHHHHHHhCCcccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcC---cccHHHHHH
Q psy16633 181 FSFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQ---EDEKATILY 257 (540)
Q Consensus 181 ~~~~~~~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~---~~~k~~~l~ 257 (540)
++.||.+.+..|+..+|+++|+++||||+++.+..+....+.+|+.+.++.+.. ....+.|.++.+. +.++..++.
T Consensus 340 LeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~-~a~~LtQEFiRIR~~re~dRea~l~ 418 (691)
T KOG0338|consen 340 LEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKD-TAPKLTQEFIRIRPKREGDREAMLA 418 (691)
T ss_pred HHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccc-cchhhhHHHheeccccccccHHHHH
Confidence 999999999999999999999999999999999999999999999999887653 4455677666554 566777777
Q ss_pred HHHHhcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCccccccc
Q psy16633 258 TLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTN 337 (540)
Q Consensus 258 ~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~ 337 (540)
.++... -..++|||+.++..|.++.-.|.-.|+++.-+||.|+|.+|...++.|++++++||||||
T Consensus 419 ~l~~rt-f~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTD------------- 484 (691)
T KOG0338|consen 419 SLITRT-FQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATD------------- 484 (691)
T ss_pred HHHHHh-cccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEec-------------
Confidence 777643 477999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEEeccccccccccccchhhhhhhhhHH
Q psy16633 338 NRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDL 417 (540)
Q Consensus 338 ~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e~~~~~~~~~~~~~~~~~~~~ 417 (540)
+++||+|+++|..||||++|.+...|+||+|||+|+|+.|.+++|+...+...
T Consensus 485 ----------vAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkl----------------- 537 (691)
T KOG0338|consen 485 ----------VASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKL----------------- 537 (691)
T ss_pred ----------hhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHH-----------------
Confidence 89999999999999999999999999999999999999999999999888776
Q ss_pred HHHHHHHHhhccccccccccccccchhhhhhhhhhH
Q psy16633 418 MNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRA 453 (540)
Q Consensus 418 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 453 (540)
++.|-+... ..+..++.-.++...++.|+.++
T Consensus 538 lK~iik~~~----~a~~klk~R~i~~~~Iek~~~~i 569 (691)
T KOG0338|consen 538 LKEIIKSST----KAGSKLKNRNIPPEVIEKFRKKI 569 (691)
T ss_pred HHHHHhhhh----hcccchhhcCCCHHHHHHHHHHH
Confidence 555443311 11122333346667777777665
No 5
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.2e-67 Score=556.30 Aligned_cols=360 Identities=36% Similarity=0.551 Sum_probs=329.6
Q ss_pred cCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeE-EEEEcCc
Q psy16633 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETK-ALVLSPS 100 (540)
Q Consensus 22 ~~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~-vlil~Pt 100 (540)
+++|++++++++.++||..|||+|.++||.++.|+|+++.|+||||||+||++|+++.+.... ..... +||++||
T Consensus 33 ~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~----~~~~~~aLil~PT 108 (513)
T COG0513 33 SLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSV----ERKYVSALILAPT 108 (513)
T ss_pred hcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhccc----ccCCCceEEECCC
Confidence 688999999999999999999999999999999999999999999999999999999975321 11112 9999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCcccc
Q psy16633 101 KELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLV 180 (540)
Q Consensus 101 ~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l 180 (540)
||||.|+++.+..++...+ .+++..++||.+...+...+..+++|||+||+++++++..+.+.+ +.+.++|+||||.|
T Consensus 109 RELA~Qi~~~~~~~~~~~~-~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l-~~v~~lVlDEADrm 186 (513)
T COG0513 109 RELAVQIAEELRKLGKNLG-GLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDL-SGVETLVLDEADRM 186 (513)
T ss_pred HHHHHHHHHHHHHHHhhcC-CccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcch-hhcCEEEeccHhhh
Confidence 9999999999999998774 577899999999998888888889999999999999999998887 99999999999999
Q ss_pred ccCCcHHHHHHHHHhCCcccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCC-CCCCCeEEEEEEcCccc-HHHHHHH
Q psy16633 181 FSFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAI-APVSQLAHYHILAQEDE-KATILYT 258 (540)
Q Consensus 181 ~~~~~~~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~-~~~~~l~~~~~~~~~~~-k~~~l~~ 258 (540)
++.||.+++..|+..+|...|+++||||+|+.+..+.+.++.+|..+.+..... .....+.|+++.+...+ |...|..
T Consensus 187 Ld~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ 266 (513)
T COG0513 187 LDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLK 266 (513)
T ss_pred hcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999888874332 25678999999998776 9999999
Q ss_pred HHHhcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccccc
Q psy16633 259 LLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNN 338 (540)
Q Consensus 259 ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~ 338 (540)
+++... ..++||||+++..|..++..|...|+++..+||+|++.+|..++..|++|.++||||||
T Consensus 267 ll~~~~-~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTD-------------- 331 (513)
T COG0513 267 LLKDED-EGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATD-------------- 331 (513)
T ss_pred HHhcCC-CCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEec--------------
Confidence 998653 44799999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEEeccc-cccccccccchhhhhhhhhHH
Q psy16633 339 RKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLR-EQDLMNDGTALSFVSLREQDL 417 (540)
Q Consensus 339 ~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~-e~~~~~~~~~~~~~~~~~~~~ 417 (540)
+++||||+++|++|||||+|.+.++|+||+|||||+|..|.+++|+.+. |...
T Consensus 332 ---------vaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~----------------- 385 (513)
T COG0513 332 ---------VAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKK----------------- 385 (513)
T ss_pred ---------hhhccCCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHH-----------------
Confidence 8999999999999999999999999999999999999999999999975 6655
Q ss_pred HHHHHHHHhhc
Q psy16633 418 MNDVNEYLMTN 428 (540)
Q Consensus 418 ~~~i~~~~~~~ 428 (540)
+..+++.+...
T Consensus 386 l~~ie~~~~~~ 396 (513)
T COG0513 386 LKRIEKRLERK 396 (513)
T ss_pred HHHHHHHHhcc
Confidence 77888776544
No 6
>KOG0340|consensus
Probab=100.00 E-value=1.3e-66 Score=492.89 Aligned_cols=385 Identities=32% Similarity=0.473 Sum_probs=341.6
Q ss_pred Cc-cCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEc
Q psy16633 20 PF-TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLS 98 (540)
Q Consensus 20 ~~-~~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~ 98 (540)
+| .+||++|+.+.++.+|+..|||+|+.|||.|++|+|++-+|.||||||++|.+|+++++-+. ..+..++|++
T Consensus 8 ~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsed-----P~giFalvlT 82 (442)
T KOG0340|consen 8 PFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSED-----PYGIFALVLT 82 (442)
T ss_pred chhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccC-----CCcceEEEec
Confidence 45 69999999999999999999999999999999999999999999999999999999998553 5789999999
Q ss_pred CcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcC---cCCccCCccEEEEc
Q psy16633 99 PSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAK---TLDLKSSLEIVIID 175 (540)
Q Consensus 99 Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~---~~~~~~~l~~lViD 175 (540)
||||||.|+.++|..++... .+++..+.|+.+.-.+...+..+|++||+|||++.+++.++ ....+.+++++|+|
T Consensus 83 PTrELA~QiaEQF~alGk~l--~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlD 160 (442)
T KOG0340|consen 83 PTRELALQIAEQFIALGKLL--NLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLD 160 (442)
T ss_pred chHHHHHHHHHHHHHhcccc--cceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEec
Confidence 99999999999999998866 88999999999999999999999999999999999999876 22333899999999
Q ss_pred CccccccCCcHHHHHHHHHhCCcccceeeEeeeccHHHHHHHHHhcCCCeEEEecC-CCCCCCCCeEEEEEEcCcccHHH
Q psy16633 176 EADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEE-PAIAPVSQLAHYHILAQEDEKAT 254 (540)
Q Consensus 176 Eah~l~~~~~~~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~-~~~~~~~~l~~~~~~~~~~~k~~ 254 (540)
|||.+++..|.+.+..+.+.+|..+|.++||||+++.+..+......++.....+. +.....+.+.+.|+.++...|..
T Consensus 161 EADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkda 240 (442)
T KOG0340|consen 161 EADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDA 240 (442)
T ss_pred chhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHH
Confidence 99999999999999999999999999999999999999888776666543222222 34566788999999999999999
Q ss_pred HHHHHHHhccc--CCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcc
Q psy16633 255 ILYTLLKLNLV--QGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQ 332 (540)
Q Consensus 255 ~l~~ll~~~~~--~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~ 332 (540)
+++.+++.... .+.++||+|+..+|+.|+..|+...+++..+||.|++.+|...+.+|+.+..+||||||
T Consensus 241 YLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTD-------- 312 (442)
T KOG0340|consen 241 YLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATD-------- 312 (442)
T ss_pred HHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEec--------
Confidence 99999986544 67899999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEEeccccccccccccchhhhhh
Q psy16633 333 INSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSL 412 (540)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e~~~~~~~~~~~~~~~ 412 (540)
+++||+|+|.|+.|||||.|.++.+|+||+||++|+|+.|.+|+|+++.|.+.
T Consensus 313 ---------------VAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l------------ 365 (442)
T KOG0340|consen 313 ---------------VASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVEL------------ 365 (442)
T ss_pred ---------------hhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHH------------
Confidence 89999999999999999999999999999999999999999999999888777
Q ss_pred hhhHHHHHHHHHHhhccccccccccccccchhhhhhhhhhHHHHHH
Q psy16633 413 REQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWR 458 (540)
Q Consensus 413 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~d~~~ 458 (540)
+..||+.++.+ +.+|.......+...-.+..+-+
T Consensus 366 -----~~aiE~~igkK-------l~e~~~~~~~~~~~~t~V~~akr 399 (442)
T KOG0340|consen 366 -----LQAIEEEIGKK-------LTEYNKVQRTVELYVTQVTVAKR 399 (442)
T ss_pred -----HHHHHHHHhcc-------cccccccchhhheehhhHHHHHH
Confidence 99999998887 44454444444444334444433
No 7
>KOG0342|consensus
Probab=100.00 E-value=7.9e-65 Score=500.02 Aligned_cols=356 Identities=30% Similarity=0.458 Sum_probs=328.4
Q ss_pred cCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcH
Q psy16633 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSK 101 (540)
Q Consensus 22 ~~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~ 101 (540)
.+.|++..+++++.+||..+|++|+.+||.++.|+|+++.|.||||||+||++|+++.+++.+.. ..++..+||++|||
T Consensus 86 ~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~-~r~~~~vlIi~PTR 164 (543)
T KOG0342|consen 86 EGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFK-PRNGTGVLIICPTR 164 (543)
T ss_pred ccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccC-CCCCeeEEEecccH
Confidence 57899999999999999999999999999999999999999999999999999999999886543 34889999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccc
Q psy16633 102 ELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVF 181 (540)
Q Consensus 102 ~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~ 181 (540)
|||.|++.+++.+..+. ..+.+..+.||.+.......+..+++|+|+|||+|++|+++..-.+...++++|+||||+++
T Consensus 165 ELA~Q~~~eak~Ll~~h-~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlL 243 (543)
T KOG0342|consen 165 ELAMQIFAEAKELLKYH-ESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLL 243 (543)
T ss_pred HHHHHHHHHHHHHHhhC-CCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhh
Confidence 99999999999998765 37888888899988888888888999999999999999999765555888999999999999
Q ss_pred cCCcHHHHHHHHHhCCcccceeeEeeeccHHHHHHHHHhcCC-CeEEEecCCC-CCCCCCeEEEEEEcCcccHHHHHHHH
Q psy16633 182 SFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRN-PVILKLEEPA-IAPVSQLAHYHILAQEDEKATILYTL 259 (540)
Q Consensus 182 ~~~~~~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~l~~-p~~i~~~~~~-~~~~~~l~~~~~~~~~~~k~~~l~~l 259 (540)
+.||++++..|+..+|+.+|.++||||.++.++.+....+.. |..+...+.. ....+.+.|.|+.++...++.+++.+
T Consensus 244 d~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ll~~~ 323 (543)
T KOG0342|consen 244 DIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFSLLYTF 323 (543)
T ss_pred hcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHHHHHHH
Confidence 999999999999999999999999999999999998877664 8888766543 44557788989999988889999999
Q ss_pred HHhcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCccccccccc
Q psy16633 260 LKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNR 339 (540)
Q Consensus 260 l~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~ 339 (540)
++.+....++||||+|......++..|+...++|..+||..+|+.|..+..+|.+.+.-||+|||
T Consensus 324 LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTD--------------- 388 (543)
T KOG0342|consen 324 LKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTD--------------- 388 (543)
T ss_pred HHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecc---------------
Confidence 99887668999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEEeccccccccc
Q psy16633 340 KRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMN 402 (540)
Q Consensus 340 ~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e~~~~~ 402 (540)
+.+||+|+|+|++|++||+|.++++||||+|||||.|..|.+++++.|.|..++.
T Consensus 389 --------VaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr 443 (543)
T KOG0342|consen 389 --------VAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLR 443 (543)
T ss_pred --------hhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHH
Confidence 8999999999999999999999999999999999999999999999999988833
No 8
>KOG0333|consensus
Probab=100.00 E-value=1.2e-64 Score=500.63 Aligned_cols=364 Identities=32% Similarity=0.470 Sum_probs=335.7
Q ss_pred ccccCCccchhcccCCccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhc
Q psy16633 5 LGWLEPTLIQVYFELPFTFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLK 84 (540)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~ 84 (540)
.|-..|.++++++|.+ ++..+++.+.+.||..|||+|+.|||..++.+|+|..|.||||||++|++|++..+-...
T Consensus 236 kg~~lpnplrnwEE~~----~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP 311 (673)
T KOG0333|consen 236 KGGRLPNPLRNWEESG----FPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLP 311 (673)
T ss_pred cCCCCCccccChhhcC----CCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCC
Confidence 4556899999999955 688999999999999999999999999999999999999999999999999998886543
Q ss_pred c----cccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhc
Q psy16633 85 Q----TAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKA 160 (540)
Q Consensus 85 ~----~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~ 160 (540)
. .....|++++|+.|||+|++|+.+.-.+++... +++++.+.|+.....+.-.+..+++|+|+||++|.+.+.+
T Consensus 312 ~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~l--g~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Len 389 (673)
T KOG0333|consen 312 PMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPL--GIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLEN 389 (673)
T ss_pred CcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccc--cceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHH
Confidence 2 123468999999999999999999999998877 5899999999999988878889999999999999999999
Q ss_pred CcCCccCCccEEEEcCccccccCCcHHHHHHHHHhCCcc-------------------------cceeeEeeeccHHHHH
Q psy16633 161 KTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL-------------------------YQAILASATLSEDVLS 215 (540)
Q Consensus 161 ~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~-------------------------~q~il~SATl~~~~~~ 215 (540)
..+.+ +.+.++|+||||.|++.||++++..++..+|.. +|+++||||+|+.+..
T Consensus 390 r~lvl-~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~ver 468 (673)
T KOG0333|consen 390 RYLVL-NQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVER 468 (673)
T ss_pred HHHHh-ccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHH
Confidence 87777 999999999999999999999999999998732 6999999999999999
Q ss_pred HHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcCcccHHHHHHHHHHhcccCCcEEEEecChhhHHHHHHHHHhCCCceEE
Q psy16633 216 LKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCV 295 (540)
Q Consensus 216 ~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~ 295 (540)
+++.++.+|+++.+.... .+...+.|.+..+++++|+..|..+++.+ ...++|||+|++..|+.|+..|++.|+.++.
T Consensus 469 lar~ylr~pv~vtig~~g-k~~~rveQ~v~m~~ed~k~kkL~eil~~~-~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~t 546 (673)
T KOG0333|consen 469 LARSYLRRPVVVTIGSAG-KPTPRVEQKVEMVSEDEKRKKLIEILESN-FDPPIIIFVNTKKGADALAKILEKAGYKVTT 546 (673)
T ss_pred HHHHHhhCCeEEEeccCC-CCccchheEEEEecchHHHHHHHHHHHhC-CCCCEEEEEechhhHHHHHHHHhhccceEEE
Confidence 999999999999998765 34567889999999999999999999876 5679999999999999999999999999999
Q ss_pred eCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEeCCCCCCcccchh
Q psy16633 296 LNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIH 375 (540)
Q Consensus 296 l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiq 375 (540)
|||+-++++|+.+++.|+.|..+|||||| +++||||+|+|++|||||++.|+++|+|
T Consensus 547 lHg~k~qeQRe~aL~~fr~~t~dIlVaTD-----------------------vAgRGIDIpnVSlVinydmaksieDYtH 603 (673)
T KOG0333|consen 547 LHGGKSQEQRENALADFREGTGDILVATD-----------------------VAGRGIDIPNVSLVINYDMAKSIEDYTH 603 (673)
T ss_pred eeCCccHHHHHHHHHHHHhcCCCEEEEec-----------------------ccccCCCCCccceeeecchhhhHHHHHH
Confidence 99999999999999999999999999999 9999999999999999999999999999
Q ss_pred ccccccCCCCCceEEEEeccccccc
Q psy16633 376 RAGRTARGKNQGTALSFVSLREQDL 400 (540)
Q Consensus 376 r~GRagR~g~~g~~i~~~~~~e~~~ 400 (540)
|+|||||+|+.|.+++|+++.+...
T Consensus 604 RIGRTgRAGk~GtaiSflt~~dt~v 628 (673)
T KOG0333|consen 604 RIGRTGRAGKSGTAISFLTPADTAV 628 (673)
T ss_pred HhccccccccCceeEEEeccchhHH
Confidence 9999999999999999999988665
No 9
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.5e-63 Score=521.06 Aligned_cols=365 Identities=27% Similarity=0.419 Sum_probs=324.4
Q ss_pred CCc-cCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhccc--ccCCCeEEE
Q psy16633 19 LPF-TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQT--AQVQETKAL 95 (540)
Q Consensus 19 ~~~-~~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~--~~~~~~~vl 95 (540)
..| +++|++.++++|.++||..|||+|++|||.+++|+|++++||||||||++|++|+++.++..... ....++++|
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~l 87 (423)
T PRK04837 8 QKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRAL 87 (423)
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 344 68899999999999999999999999999999999999999999999999999999999764321 113468999
Q ss_pred EEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEc
Q psy16633 96 VLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIID 175 (540)
Q Consensus 96 il~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViD 175 (540)
|++||++||.|+++.+..++... ++.+..+.|+.....+...+..+++|+|+||+++.+++..+.+.+ +.++++|||
T Consensus 88 il~PtreLa~Qi~~~~~~l~~~~--~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l-~~v~~lViD 164 (423)
T PRK04837 88 IMAPTRELAVQIHADAEPLAQAT--GLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINL-GAIQVVVLD 164 (423)
T ss_pred EECCcHHHHHHHHHHHHHHhccC--CceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccc-ccccEEEEe
Confidence 99999999999999999998776 678888888887777777777889999999999999998887777 999999999
Q ss_pred CccccccCCcHHHHHHHHHhCCc--ccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcCcccHH
Q psy16633 176 EADLVFSFGYEDDMKAVLKFLPK--LYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKA 253 (540)
Q Consensus 176 Eah~l~~~~~~~~l~~i~~~l~~--~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~~~k~ 253 (540)
|||++++++|..++..++..++. ..+.+++|||++..+..+....+.+|..+.+..... ....+.+.++.....+|.
T Consensus 165 Ead~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~-~~~~i~~~~~~~~~~~k~ 243 (423)
T PRK04837 165 EADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQK-TGHRIKEELFYPSNEEKM 243 (423)
T ss_pred cHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCc-CCCceeEEEEeCCHHHHH
Confidence 99999999999999999999984 567899999999999999988999998887765432 335567777777777888
Q ss_pred HHHHHHHHhcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCccc
Q psy16633 254 TILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQI 333 (540)
Q Consensus 254 ~~l~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~ 333 (540)
..+..++... ...++||||+++..|+.++..|.+.|+.+..+||+|++.+|..+++.|++|+++||||||
T Consensus 244 ~~l~~ll~~~-~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd--------- 313 (423)
T PRK04837 244 RLLQTLIEEE-WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATD--------- 313 (423)
T ss_pred HHHHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEec---------
Confidence 8888887653 457999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEEeccccccccccccchhhhhhh
Q psy16633 334 NSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLR 413 (540)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e~~~~~~~~~~~~~~~~ 413 (540)
+++||||+|+|++|||||+|.+..+|+||+|||||+|+.|.+++|+.+.+...
T Consensus 314 --------------v~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~------------- 366 (423)
T PRK04837 314 --------------VAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN------------- 366 (423)
T ss_pred --------------hhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHH-------------
Confidence 99999999999999999999999999999999999999999999999887666
Q ss_pred hhHHHHHHHHHHhhc
Q psy16633 414 EQDLMNDVNEYLMTN 428 (540)
Q Consensus 414 ~~~~~~~i~~~~~~~ 428 (540)
+..+++++...
T Consensus 367 ----~~~i~~~~~~~ 377 (423)
T PRK04837 367 ----LPAIETYIGHS 377 (423)
T ss_pred ----HHHHHHHhCCC
Confidence 77777776554
No 10
>KOG0328|consensus
Probab=100.00 E-value=5.6e-65 Score=467.70 Aligned_cols=357 Identities=30% Similarity=0.496 Sum_probs=332.4
Q ss_pred cCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcH
Q psy16633 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSK 101 (540)
Q Consensus 22 ~~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~ 101 (540)
+.||.+.+++++-..||+.|+.+|+.|||.+++|+|++++|..|+|||.+|.+.+++.+-- .....++||++|||
T Consensus 31 ~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~-----~~r~tQ~lilsPTR 105 (400)
T KOG0328|consen 31 DMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDI-----SVRETQALILSPTR 105 (400)
T ss_pred hcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeeccc-----ccceeeEEEecChH
Confidence 5889999999999999999999999999999999999999999999999999999987632 34568999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccc
Q psy16633 102 ELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVF 181 (540)
Q Consensus 102 ~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~ 181 (540)
|||.|+.+.+..++.++ ++.+..+.||.+.......+..+.+++.+||++++++++.+.+.. +.++++|+||||.|+
T Consensus 106 ELa~Qi~~vi~alg~~m--nvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~t-r~vkmlVLDEaDemL 182 (400)
T KOG0328|consen 106 ELAVQIQKVILALGDYM--NVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRT-RAVKMLVLDEADEML 182 (400)
T ss_pred HHHHHHHHHHHHhcccc--cceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccc-cceeEEEeccHHHHH
Confidence 99999999999999888 899999999988887777777889999999999999999999887 899999999999999
Q ss_pred cCCcHHHHHHHHHhCCcccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcCccc-HHHHHHHHH
Q psy16633 182 SFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDE-KATILYTLL 260 (540)
Q Consensus 182 ~~~~~~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~~~-k~~~l~~ll 260 (540)
+.||.+.+..+.+++|+..|++++|||+|.++.++...++.+|+.+-....+. ..+.+++|++.++.++ |+..|..+.
T Consensus 183 ~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdel-tlEgIKqf~v~ve~EewKfdtLcdLY 261 (400)
T KOG0328|consen 183 NKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDEL-TLEGIKQFFVAVEKEEWKFDTLCDLY 261 (400)
T ss_pred HhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCC-chhhhhhheeeechhhhhHhHHHHHh
Confidence 99999999999999999999999999999999999999999999988877764 4567899999887554 999999988
Q ss_pred HhcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccccccc
Q psy16633 261 KLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRK 340 (540)
Q Consensus 261 ~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~ 340 (540)
... .-.+++|||||+..+..|.+.+++.++.+..+||+|++++|..++.+|+.|..+|||+||
T Consensus 262 d~L-tItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTD---------------- 324 (400)
T KOG0328|consen 262 DTL-TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTD---------------- 324 (400)
T ss_pred hhh-ehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEec----------------
Confidence 754 345899999999999999999999999999999999999999999999999999999999
Q ss_pred cccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEEeccccccccccccchhhhhhhhhHHHHH
Q psy16633 341 RKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMND 420 (540)
Q Consensus 341 ~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 420 (540)
+.+||+|+|.|++|||||+|.+.+.|+||+||.||.|++|.++.|+..+|... ++.
T Consensus 325 -------VwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~-----------------lrd 380 (400)
T KOG0328|consen 325 -------VWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRI-----------------LRD 380 (400)
T ss_pred -------hhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHH-----------------HHH
Confidence 99999999999999999999999999999999999999999999999988877 999
Q ss_pred HHHHHhhc
Q psy16633 421 VNEYLMTN 428 (540)
Q Consensus 421 i~~~~~~~ 428 (540)
|++++...
T Consensus 381 ieq~yst~ 388 (400)
T KOG0328|consen 381 IEQYYSTQ 388 (400)
T ss_pred HHHHHhhh
Confidence 99998876
No 11
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=3.1e-63 Score=531.62 Aligned_cols=365 Identities=27% Similarity=0.380 Sum_probs=326.3
Q ss_pred cccCCccchhcccCCccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcc
Q psy16633 6 GWLEPTLIQVYFELPFTFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQ 85 (540)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~ 85 (540)
|-..|.++..|++ ++|++.++++|.++||.+||++|.++||.+++|+|+++.||||||||++|++|++.++.....
T Consensus 122 g~~~p~p~~~f~~----~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~ 197 (545)
T PTZ00110 122 GENVPKPVVSFEY----TSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPL 197 (545)
T ss_pred CCCCCcccCCHhh----cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhccc
Confidence 5567888888887 567999999999999999999999999999999999999999999999999999998875432
Q ss_pred cccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCc
Q psy16633 86 TAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDL 165 (540)
Q Consensus 86 ~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~ 165 (540)
.....++.+|||+||+|||.|+.+.+..++... .+.+..++|+.....+...+..+++|+|+||++|.+++......+
T Consensus 198 ~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~--~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l 275 (545)
T PTZ00110 198 LRYGDGPIVLVLAPTRELAEQIREQCNKFGASS--KIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNL 275 (545)
T ss_pred ccCCCCcEEEEECChHHHHHHHHHHHHHHhccc--CccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCCh
Confidence 223457899999999999999999999998765 677788888888777777777889999999999999999877776
Q ss_pred cCCccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEeeeccHHHHHHHHHhcC-CCeEEEecCCCCCCCCCeEEEE
Q psy16633 166 KSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILR-NPVILKLEEPAIAPVSQLAHYH 244 (540)
Q Consensus 166 ~~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~l~-~p~~i~~~~~~~~~~~~l~~~~ 244 (540)
..+++|||||||+|++++|...+..++..+++..|++++|||++..+..+...++. +|+.+.+..........+.+.+
T Consensus 276 -~~v~~lViDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~ 354 (545)
T PTZ00110 276 -RRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEV 354 (545)
T ss_pred -hhCcEEEeehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEE
Confidence 89999999999999999999999999999999999999999999999998887775 5777776654444456677887
Q ss_pred EEcCcccHHHHHHHHHHhcc-cCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeC
Q psy16633 245 ILAQEDEKATILYTLLKLNL-VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIAS 323 (540)
Q Consensus 245 ~~~~~~~k~~~l~~ll~~~~-~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT 323 (540)
..+.+.+|...+..++.... ..+++||||++++.|+.++..|...++.+..+||++++.+|..+++.|++|..+|||||
T Consensus 355 ~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaT 434 (545)
T PTZ00110 355 FVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIAT 434 (545)
T ss_pred EEEechhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEc
Confidence 77888888888888877543 56799999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCCcccccccccccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEEeccccccc
Q psy16633 324 DEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDL 400 (540)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e~~~ 400 (540)
| +++||||+++|++|||||+|.+..+|+||+|||||+|+.|.+++|+++++...
T Consensus 435 d-----------------------v~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~ 488 (545)
T PTZ00110 435 D-----------------------VASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRL 488 (545)
T ss_pred c-----------------------hhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHH
Confidence 9 99999999999999999999999999999999999999999999999887665
No 12
>KOG0345|consensus
Probab=100.00 E-value=1.2e-63 Score=488.26 Aligned_cols=352 Identities=33% Similarity=0.477 Sum_probs=317.3
Q ss_pred CCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHH
Q psy16633 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKE 102 (540)
Q Consensus 23 ~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~ 102 (540)
.+|.++++.++..+||..+||+|..+||.+++++|+++.|+||||||+||++|++..+.............+|||+||||
T Consensus 11 ~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRE 90 (567)
T KOG0345|consen 11 PPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRE 90 (567)
T ss_pred CCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHH
Confidence 45889999999999999999999999999999999999999999999999999999997654433333468999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhh-hhCCCCEEEEChHHHHHHHhcCc--CCccCCccEEEEcCccc
Q psy16633 103 LCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL-LVERPDIVVATPARALAHLKAKT--LDLKSSLEIVIIDEADL 179 (540)
Q Consensus 103 La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~-l~~~~~Ivv~Tp~~l~~~l~~~~--~~~~~~l~~lViDEah~ 179 (540)
||.|+.+++..+.... ..+++..+.||......... ...+++|+|||||+|.+++++.. +++ .+++++|+||||+
T Consensus 91 La~QI~~V~~~F~~~l-~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~-rsLe~LVLDEADr 168 (567)
T KOG0345|consen 91 LARQIREVAQPFLEHL-PNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSF-RSLEILVLDEADR 168 (567)
T ss_pred HHHHHHHHHHHHHHhh-hccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccc-cccceEEecchHh
Confidence 9999999999998874 57888888888776655443 34578999999999999998843 443 6999999999999
Q ss_pred cccCCcHHHHHHHHHhCCcccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCC-CCCCCeEEEEEEcCcccHHHHHHH
Q psy16633 180 VFSFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAI-APVSQLAHYHILAQEDEKATILYT 258 (540)
Q Consensus 180 l~~~~~~~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~-~~~~~l~~~~~~~~~~~k~~~l~~ 258 (540)
++++||...+..|++.+|+.+++-+||||....+..+....++||+.+.+..... ..+..+..+|+.|....|...+.+
T Consensus 169 LldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~~lv~ 248 (567)
T KOG0345|consen 169 LLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKLSQLVH 248 (567)
T ss_pred HhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988876542 245678889999999999999999
Q ss_pred HHHhcccCCcEEEEecChhhHHHHHHHHHhC--CCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccc
Q psy16633 259 LLKLNLVQGKTIIFVNTVDKCYKLKLYLEQF--KISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINST 336 (540)
Q Consensus 259 ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~--~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~ 336 (540)
++... ..+|+|||++|...+++....|... +..++.+||.|.+..|..++..|.+..-.+|+|||
T Consensus 249 ~L~~~-~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TD------------ 315 (567)
T KOG0345|consen 249 LLNNN-KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTD------------ 315 (567)
T ss_pred HHhcc-ccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeeh------------
Confidence 99853 5679999999999999999988875 67889999999999999999999998899999999
Q ss_pred cccccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEEeccccccc
Q psy16633 337 NNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDL 400 (540)
Q Consensus 337 ~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e~~~ 400 (540)
+++||||+|+|++||+||+|.++..|+||+|||||+|+.|.||+|+.+.|..+
T Consensus 316 -----------VaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aY 368 (567)
T KOG0345|consen 316 -----------VAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAY 368 (567)
T ss_pred -----------hhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHH
Confidence 89999999999999999999999999999999999999999999999988766
No 13
>KOG0343|consensus
Probab=100.00 E-value=5.1e-64 Score=498.21 Aligned_cols=351 Identities=30% Similarity=0.465 Sum_probs=325.5
Q ss_pred cCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcH
Q psy16633 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSK 101 (540)
Q Consensus 22 ~~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~ 101 (540)
+|+|+.+.+++|++.+|..||.+|+.+||.++.|+|++..|.||||||+||++|+|++|+..+ +....|.-+|||+|||
T Consensus 73 dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~k-Ws~~DGlGalIISPTR 151 (758)
T KOG0343|consen 73 DLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLK-WSPTDGLGALIISPTR 151 (758)
T ss_pred hCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcC-CCCCCCceeEEecchH
Confidence 788999999999999999999999999999999999999999999999999999999998753 4556788999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccc
Q psy16633 102 ELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVF 181 (540)
Q Consensus 102 ~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~ 181 (540)
|||.|+++++.+.+... +.+++.+.||.+.......+ .+.+|+|||||+|+.|+..+...-.+++.++|+||||+++
T Consensus 152 ELA~QtFevL~kvgk~h--~fSaGLiiGG~~~k~E~eRi-~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~L 228 (758)
T KOG0343|consen 152 ELALQTFEVLNKVGKHH--DFSAGLIIGGKDVKFELERI-SQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRML 228 (758)
T ss_pred HHHHHHHHHHHHHhhcc--ccccceeecCchhHHHHHhh-hcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHH
Confidence 99999999999999877 78889999998876655444 5789999999999999988765545999999999999999
Q ss_pred cCCcHHHHHHHHHhCCcccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCC-CCCCCCeEEEEEEcCcccHHHHHHHHH
Q psy16633 182 SFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPA-IAPVSQLAHYHILAQEDEKATILYTLL 260 (540)
Q Consensus 182 ~~~~~~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~-~~~~~~l~~~~~~~~~~~k~~~l~~ll 260 (540)
++||...+..|++.+|+.+|+++||||.+..+..++++.+.+|.++.+-... ...+.++.|+|+.++..+|..+|..++
T Consensus 229 DMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~sFI 308 (758)
T KOG0343|consen 229 DMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLWSFI 308 (758)
T ss_pred HHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998877443 567788999999999999999999999
Q ss_pred HhcccCCcEEEEecChhhHHHHHHHHHhC--CCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccccc
Q psy16633 261 KLNLVQGKTIIFVNTVDKCYKLKLYLEQF--KISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNN 338 (540)
Q Consensus 261 ~~~~~~~k~IIF~~s~~~~~~l~~~L~~~--~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~ 338 (540)
+.++ ..++|||++|...+..++..+.+. |++...+||.|.+..|..++.+|.....-||+|||
T Consensus 309 ~shl-k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TD-------------- 373 (758)
T KOG0343|consen 309 KSHL-KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTD-------------- 373 (758)
T ss_pred Hhcc-ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeeh--------------
Confidence 9774 669999999999999999999876 88899999999999999999999999999999999
Q ss_pred cccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEEeccccccc
Q psy16633 339 RKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDL 400 (540)
Q Consensus 339 ~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e~~~ 400 (540)
+++||+|||.|++||.+|+|.++++|+||+||++|.+..|.++++++|.+.+.
T Consensus 374 ---------v~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~ 426 (758)
T KOG0343|consen 374 ---------VAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEA 426 (758)
T ss_pred ---------hhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHH
Confidence 89999999999999999999999999999999999999999999999988543
No 14
>KOG0326|consensus
Probab=100.00 E-value=2.5e-64 Score=470.62 Aligned_cols=357 Identities=29% Similarity=0.448 Sum_probs=333.9
Q ss_pred cCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcH
Q psy16633 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSK 101 (540)
Q Consensus 22 ~~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~ 101 (540)
+++|.++++..+.+.||+.|+|+|+++||.++.|+|++++|..|+|||.||++|+++.+-. .....+++|+||||
T Consensus 89 d~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~-----~~~~IQ~~ilVPtr 163 (459)
T KOG0326|consen 89 DYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDP-----KKNVIQAIILVPTR 163 (459)
T ss_pred HhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCc-----cccceeEEEEeecc
Confidence 7899999999999999999999999999999999999999999999999999999998843 34678999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccc
Q psy16633 102 ELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVF 181 (540)
Q Consensus 102 ~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~ 181 (540)
|||.|+...++.+...+ ++.+...+||.+.....-.+....+++|+||++++++...+.-.+ +...++|+||||.++
T Consensus 164 elALQtSqvc~~lskh~--~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~l-s~c~~lV~DEADKlL 240 (459)
T KOG0326|consen 164 ELALQTSQVCKELSKHL--GIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADL-SDCVILVMDEADKLL 240 (459)
T ss_pred hhhHHHHHHHHHHhccc--CeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccc-hhceEEEechhhhhh
Confidence 99999999999999988 689899999998887777777889999999999999999987777 999999999999999
Q ss_pred cCCcHHHHHHHHHhCCcccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcCcccHHHHHHHHHH
Q psy16633 182 SFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLK 261 (540)
Q Consensus 182 ~~~~~~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~ll~ 261 (540)
+..|...+..++..+|+..|++++|||+|-.+..+...++++|..+.+-++- ....+.|||..+.+..|...|..++.
T Consensus 241 s~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~eL--tl~GvtQyYafV~e~qKvhCLntLfs 318 (459)
T KOG0326|consen 241 SVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEEL--TLKGVTQYYAFVEERQKVHCLNTLFS 318 (459)
T ss_pred chhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhhh--hhcchhhheeeechhhhhhhHHHHHH
Confidence 9999999999999999999999999999999999999999999999987653 34678999999999999998888876
Q ss_pred hcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCccccccccccc
Q psy16633 262 LNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKR 341 (540)
Q Consensus 262 ~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~ 341 (540)
.. .-.++||||||..+++-++..+.+.|+.|..+|+.|.++.|..++..|++|.++.|||||
T Consensus 319 kL-qINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctD----------------- 380 (459)
T KOG0326|consen 319 KL-QINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTD----------------- 380 (459)
T ss_pred Hh-cccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehh-----------------
Confidence 43 345899999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEEeccccccccccccchhhhhhhhhHHHHHH
Q psy16633 342 KRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDV 421 (540)
Q Consensus 342 ~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~i 421 (540)
.+.||||+++|++|||||+|.+.++|.||+||.||.|..|.||.+++.+|... +.+|
T Consensus 381 ------L~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~-----------------L~~I 437 (459)
T KOG0326|consen 381 ------LFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFN-----------------LYRI 437 (459)
T ss_pred ------hhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhh-----------------HHHH
Confidence 89999999999999999999999999999999999999999999999999887 9999
Q ss_pred HHHHhhcc
Q psy16633 422 NEYLMTNL 429 (540)
Q Consensus 422 ~~~~~~~~ 429 (540)
|..++..+
T Consensus 438 E~eLGtEI 445 (459)
T KOG0326|consen 438 EQELGTEI 445 (459)
T ss_pred HHHhcccc
Confidence 99988763
No 15
>KOG0348|consensus
Probab=100.00 E-value=4.1e-63 Score=490.40 Aligned_cols=359 Identities=28% Similarity=0.423 Sum_probs=313.6
Q ss_pred cCCCCHHHHHHHHH-CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhccc-ccCCCeEEEEEcC
Q psy16633 22 TFTLFCIPLQAIAK-LGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQT-AQVQETKALVLSP 99 (540)
Q Consensus 22 ~~~L~~~i~~~l~~-~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~-~~~~~~~vlil~P 99 (540)
++||++.+...|+. +++..||.+|+++||.+++|+|++|.|+||||||+||++|+++.|...... .+..|..+||+||
T Consensus 140 ~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivP 219 (708)
T KOG0348|consen 140 SLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVP 219 (708)
T ss_pred hcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEec
Confidence 79999999999987 699999999999999999999999999999999999999999999865432 3567999999999
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCc-CCccCCccEEEEcCcc
Q psy16633 100 SKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKT-LDLKSSLEIVIIDEAD 178 (540)
Q Consensus 100 t~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~-~~~~~~l~~lViDEah 178 (540)
|||||.|+|+.+.++...+.+-+. +.+.||+........+..+.+|+|+|||+|++|+.+.. +.+ +.+.+||+||+|
T Consensus 220 TREL~~Q~y~~~qKLl~~~hWIVP-g~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~-s~LRwlVlDEaD 297 (708)
T KOG0348|consen 220 TRELALQIYETVQKLLKPFHWIVP-GVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKF-SRLRWLVLDEAD 297 (708)
T ss_pred hHHHHHHHHHHHHHHhcCceEEee-ceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchhee-eeeeEEEecchh
Confidence 999999999999999987754444 55566777777788888999999999999999999865 444 899999999999
Q ss_pred ccccCCcHHHHHHHHHhCC-------------cccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCC------------
Q psy16633 179 LVFSFGYEDDMKAVLKFLP-------------KLYQAILASATLSEDVLSLKHLILRNPVILKLEEPA------------ 233 (540)
Q Consensus 179 ~l~~~~~~~~l~~i~~~l~-------------~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~------------ 233 (540)
++++.||+.++..|++.+. ...|.+++|||+++.+..+....+++|+.|.++...
T Consensus 298 rlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~e 377 (708)
T KOG0348|consen 298 RLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQE 377 (708)
T ss_pred HHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhhhhh
Confidence 9999999999999998762 246899999999999999999999999999843211
Q ss_pred ------------CCCCCCeEEEEEEcCcccHHHHHHHHHHhc---ccCCcEEEEecChhhHHHHHHHHHhC---------
Q psy16633 234 ------------IAPVSQLAHYHILAQEDEKATILYTLLKLN---LVQGKTIIFVNTVDKCYKLKLYLEQF--------- 289 (540)
Q Consensus 234 ------------~~~~~~l~~~~~~~~~~~k~~~l~~ll~~~---~~~~k~IIF~~s~~~~~~l~~~L~~~--------- 289 (540)
...++++.|.|..++..-++..|.+++... ....++|||+++.+.++.-+..|...
T Consensus 378 v~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s 457 (708)
T KOG0348|consen 378 VDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSS 457 (708)
T ss_pred cCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhccccccc
Confidence 233456788888899988888887777643 23448999999999999888877643
Q ss_pred -------------CCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccccccccccCccccccccCCCC
Q psy16633 290 -------------KISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQ 356 (540)
Q Consensus 290 -------------~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~ 356 (540)
+.+..-+||+|.|++|..+++.|....-.||+||| +++||+|+|
T Consensus 458 ~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTD-----------------------VAaRGLDlP 514 (708)
T KOG0348|consen 458 GAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTD-----------------------VAARGLDLP 514 (708)
T ss_pred CCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehh-----------------------hhhccCCCC
Confidence 34677899999999999999999999999999999 899999999
Q ss_pred CcCEEEeCCCCCCcccchhccccccCCCCCceEEEEecccccccccccc
Q psy16633 357 FVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGT 405 (540)
Q Consensus 357 ~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e~~~~~~~~ 405 (540)
+|.+||.||+|.+.++|+||+|||+|+|..|.+++|..|.|.++++...
T Consensus 515 ~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~ 563 (708)
T KOG0348|consen 515 HVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLK 563 (708)
T ss_pred CcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988865543
No 16
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=1.4e-61 Score=511.21 Aligned_cols=362 Identities=29% Similarity=0.492 Sum_probs=324.2
Q ss_pred cCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhccc-ccCCCeEEEEEcCc
Q psy16633 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQT-AQVQETKALVLSPS 100 (540)
Q Consensus 22 ~~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~-~~~~~~~vlil~Pt 100 (540)
+++|+++++++|.++||..||++|++|||.+++|+|++++||||||||++|++|+++.+...... ......++||++||
T Consensus 5 ~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~Pt 84 (456)
T PRK10590 5 SLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPT 84 (456)
T ss_pred HcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCc
Confidence 58899999999999999999999999999999999999999999999999999999998754321 11234689999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCcccc
Q psy16633 101 KELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLV 180 (540)
Q Consensus 101 ~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l 180 (540)
++||.|+.+.+..+.... .+.+..+.|+.....+...+...++|+|+||++|++++....+.+ +.+++|||||||++
T Consensus 85 reLa~Qi~~~~~~~~~~~--~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l-~~v~~lViDEah~l 161 (456)
T PRK10590 85 RELAAQIGENVRDYSKYL--NIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL-DQVEILVLDEADRM 161 (456)
T ss_pred HHHHHHHHHHHHHHhccC--CCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCccc-ccceEEEeecHHHH
Confidence 999999999999998766 677788888888777777777889999999999999998877776 89999999999999
Q ss_pred ccCCcHHHHHHHHHhCCcccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcCcccHHHHHHHHH
Q psy16633 181 FSFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLL 260 (540)
Q Consensus 181 ~~~~~~~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~ll 260 (540)
++++|..++..++..++...|++++|||+++.+..+...++.+|..+.+.... .....+.+++..++...+..++..++
T Consensus 162 l~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~~i~~~~~~~~~~~k~~~l~~l~ 240 (456)
T PRK10590 162 LDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRN-TASEQVTQHVHFVDKKRKRELLSQMI 240 (456)
T ss_pred hccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEeccc-ccccceeEEEEEcCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999887765443 23456777877788888888888777
Q ss_pred HhcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccccccc
Q psy16633 261 KLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRK 340 (540)
Q Consensus 261 ~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~ 340 (540)
... ...++||||+++..|+.++..|.+.++.+..+||+|++.+|..+++.|++|.++|||||+
T Consensus 241 ~~~-~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTd---------------- 303 (456)
T PRK10590 241 GKG-NWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATD---------------- 303 (456)
T ss_pred HcC-CCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcc----------------
Confidence 643 456899999999999999999999999999999999999999999999999999999999
Q ss_pred cccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEEeccccccccccccchhhhhhhhhHHHHH
Q psy16633 341 RKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMND 420 (540)
Q Consensus 341 ~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 420 (540)
++++|||+|+|++|||||+|.+..+|+||+|||||+|..|.+++|+...|... ++.
T Consensus 304 -------v~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~-----------------~~~ 359 (456)
T PRK10590 304 -------IAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL-----------------LRD 359 (456)
T ss_pred -------HHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHH-----------------HHH
Confidence 99999999999999999999999999999999999999999999999888766 888
Q ss_pred HHHHHhhc
Q psy16633 421 VNEYLMTN 428 (540)
Q Consensus 421 i~~~~~~~ 428 (540)
+++.+..+
T Consensus 360 ie~~l~~~ 367 (456)
T PRK10590 360 IEKLLKKE 367 (456)
T ss_pred HHHHhcCC
Confidence 88887654
No 17
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=4.7e-61 Score=509.16 Aligned_cols=357 Identities=32% Similarity=0.496 Sum_probs=324.7
Q ss_pred cCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcH
Q psy16633 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSK 101 (540)
Q Consensus 22 ~~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~ 101 (540)
+++|++.+++++.++||..|||+|++|||.+++|+|++++||||||||++|++|+++.+... ....++||++||+
T Consensus 8 ~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~-----~~~~~~lil~Ptr 82 (460)
T PRK11776 8 TLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVK-----RFRVQALVLCPTR 82 (460)
T ss_pred hcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhc-----cCCceEEEEeCCH
Confidence 57899999999999999999999999999999999999999999999999999999988432 2456899999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccc
Q psy16633 102 ELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVF 181 (540)
Q Consensus 102 ~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~ 181 (540)
+||.|+.+.++.++... ..+.+..++|+.+...+...+..+++|+|+||+++.+++.++.+.+ .++++||+||||+|+
T Consensus 83 eLa~Q~~~~~~~~~~~~-~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l-~~l~~lViDEad~~l 160 (460)
T PRK11776 83 ELADQVAKEIRRLARFI-PNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDL-DALNTLVLDEADRML 160 (460)
T ss_pred HHHHHHHHHHHHHHhhC-CCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccH-HHCCEEEEECHHHHh
Confidence 99999999999987654 2578888899988887777788899999999999999999887777 899999999999999
Q ss_pred cCCcHHHHHHHHHhCCcccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcCcccHHHHHHHHHH
Q psy16633 182 SFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLK 261 (540)
Q Consensus 182 ~~~~~~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~ll~ 261 (540)
+++|..++..++..+|...|++++|||+++.+..+...++.+|..+.+.... ....+.++++.++..+|...+..++.
T Consensus 161 ~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~--~~~~i~~~~~~~~~~~k~~~l~~ll~ 238 (460)
T PRK11776 161 DMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH--DLPAIEQRFYEVSPDERLPALQRLLL 238 (460)
T ss_pred CcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC--CCCCeeEEEEEeCcHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988876543 23457888888888889888888887
Q ss_pred hcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCccccccccccc
Q psy16633 262 LNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKR 341 (540)
Q Consensus 262 ~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~ 341 (540)
.. ..+++||||+++..|+.++..|.+.++.+..+||+|++.+|..+++.|++|.++|||||+
T Consensus 239 ~~-~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTd----------------- 300 (460)
T PRK11776 239 HH-QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATD----------------- 300 (460)
T ss_pred hc-CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEec-----------------
Confidence 43 456899999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEEeccccccccccccchhhhhhhhhHHHHHH
Q psy16633 342 KRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDV 421 (540)
Q Consensus 342 ~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~i 421 (540)
++++|+|+|++++|||||+|.+..+|+||+|||||+|+.|.+++|+.+.|... ++.+
T Consensus 301 ------v~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~-----------------~~~i 357 (460)
T PRK11776 301 ------VAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQR-----------------ANAI 357 (460)
T ss_pred ------ccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHH-----------------HHHH
Confidence 99999999999999999999999999999999999999999999999887766 7778
Q ss_pred HHHHhhc
Q psy16633 422 NEYLMTN 428 (540)
Q Consensus 422 ~~~~~~~ 428 (540)
++.++..
T Consensus 358 ~~~~~~~ 364 (460)
T PRK11776 358 EDYLGRK 364 (460)
T ss_pred HHHhCCC
Confidence 7776554
No 18
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=3.6e-61 Score=514.23 Aligned_cols=366 Identities=26% Similarity=0.412 Sum_probs=321.9
Q ss_pred ccccccCCccchhcccCCccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHh
Q psy16633 3 AKLGWLEPTLIQVYFELPFTFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIIN 82 (540)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~ 82 (540)
...|-..|.++.+|.+ ++|++.++++|.++||..|||+|.+|||.++.|+|+++.||||||||++|++|++++++.
T Consensus 110 ~~~g~~~p~pi~~f~~----~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~ 185 (518)
T PLN00206 110 HVKGEAVPPPILSFSS----CGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCT 185 (518)
T ss_pred EecCCCCCchhcCHHh----CCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHh
Confidence 4567778899998887 568999999999999999999999999999999999999999999999999999998875
Q ss_pred hcc--cccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhc
Q psy16633 83 LKQ--TAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKA 160 (540)
Q Consensus 83 ~~~--~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~ 160 (540)
... .....++++||++||+|||.|+.+.++.++... .+....+.|+.....+...+..+++|+|+||++|.+++..
T Consensus 186 ~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~--~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~ 263 (518)
T PLN00206 186 IRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGL--PFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSK 263 (518)
T ss_pred hccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCC--CceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHc
Confidence 321 112357899999999999999999999887655 5677777787776666666777899999999999999988
Q ss_pred CcCCccCCccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCe
Q psy16633 161 KTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQL 240 (540)
Q Consensus 161 ~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l 240 (540)
....+ +++++|||||||+|+++||...+..++..++ ..|++++|||+++.+..+...++.++..+...... .....+
T Consensus 264 ~~~~l-~~v~~lViDEad~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~-~~~~~v 340 (518)
T PLN00206 264 HDIEL-DNVSVLVLDEVDCMLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPN-RPNKAV 340 (518)
T ss_pred CCccc-hheeEEEeecHHHHhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCC-CCCcce
Confidence 87777 8999999999999999999999999998886 57999999999999999999999999888876554 233556
Q ss_pred EEEEEEcCcccHHHHHHHHHHhcc-cCCcEEEEecChhhHHHHHHHHHh-CCCceEEeCCCCCHHHHHHHHHHHhcCCcc
Q psy16633 241 AHYHILAQEDEKATILYTLLKLNL-VQGKTIIFVNTVDKCYKLKLYLEQ-FKISTCVLNSELPAKARCHAVYQFNQGLYD 318 (540)
Q Consensus 241 ~~~~~~~~~~~k~~~l~~ll~~~~-~~~k~IIF~~s~~~~~~l~~~L~~-~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~ 318 (540)
.+..+.+...++...+..+++... ..+++||||+++..|+.++..|.. .++.+..+||++++.+|..+++.|++|.++
T Consensus 341 ~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ 420 (518)
T PLN00206 341 KQLAIWVETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVP 420 (518)
T ss_pred eEEEEeccchhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCC
Confidence 777777887777777777776432 346899999999999999999975 689999999999999999999999999999
Q ss_pred EEEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEEeccccc
Q psy16633 319 VIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQ 398 (540)
Q Consensus 319 iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e~ 398 (540)
|||||+ +++||||+|+|++|||||+|.+..+|+||+|||||.|..|.+++|+++++.
T Consensus 421 ILVaTd-----------------------vl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~ 477 (518)
T PLN00206 421 VIVATG-----------------------VLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDR 477 (518)
T ss_pred EEEEec-----------------------HhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHH
Confidence 999999 999999999999999999999999999999999999999999999988776
Q ss_pred cc
Q psy16633 399 DL 400 (540)
Q Consensus 399 ~~ 400 (540)
..
T Consensus 478 ~~ 479 (518)
T PLN00206 478 NL 479 (518)
T ss_pred HH
Confidence 55
No 19
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=7.7e-61 Score=514.75 Aligned_cols=362 Identities=30% Similarity=0.494 Sum_probs=320.6
Q ss_pred cCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhccc--ccCCCeEEEEEcC
Q psy16633 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQT--AQVQETKALVLSP 99 (540)
Q Consensus 22 ~~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~--~~~~~~~vlil~P 99 (540)
+++|++.++++|.++||..||++|+++||.+++|+|++++||||||||++|++|+++.++..... ......++||++|
T Consensus 13 ~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~P 92 (572)
T PRK04537 13 SFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAP 92 (572)
T ss_pred hcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeC
Confidence 58899999999999999999999999999999999999999999999999999999998753211 1123579999999
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCc-CCccCCccEEEEcCcc
Q psy16633 100 SKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKT-LDLKSSLEIVIIDEAD 178 (540)
Q Consensus 100 t~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~-~~~~~~l~~lViDEah 178 (540)
|++||.|+++.+..++... .+.+..++|+.....+...+...++|+|+||++|++++.... +.+ ..+++|||||||
T Consensus 93 TreLa~Qi~~~~~~l~~~~--~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l-~~v~~lViDEAh 169 (572)
T PRK04537 93 TRELAIQIHKDAVKFGADL--GLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSL-HACEICVLDEAD 169 (572)
T ss_pred cHHHHHHHHHHHHHHhccC--CceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccch-hheeeeEecCHH
Confidence 9999999999999998766 688889999988888877788889999999999999998754 444 889999999999
Q ss_pred ccccCCcHHHHHHHHHhCCc--ccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcCcccHHHHH
Q psy16633 179 LVFSFGYEDDMKAVLKFLPK--LYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATIL 256 (540)
Q Consensus 179 ~l~~~~~~~~l~~i~~~l~~--~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~~~k~~~l 256 (540)
+|++++|..++..++..++. ..|+++||||++..+..+...++.+|..+....... ....+.++++.+...+|...+
T Consensus 170 ~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~-~~~~i~q~~~~~~~~~k~~~L 248 (572)
T PRK04537 170 RMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETI-TAARVRQRIYFPADEEKQTLL 248 (572)
T ss_pred HHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccc-cccceeEEEEecCHHHHHHHH
Confidence 99999999999999999986 689999999999999999988998887766554432 335577777777778888888
Q ss_pred HHHHHhcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccc
Q psy16633 257 YTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINST 336 (540)
Q Consensus 257 ~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~ 336 (540)
..++... ...++||||+++..|+.++..|.+.++.+..+||+|++.+|..+++.|++|.++||||||
T Consensus 249 ~~ll~~~-~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTd------------ 315 (572)
T PRK04537 249 LGLLSRS-EGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATD------------ 315 (572)
T ss_pred HHHHhcc-cCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEeh------------
Confidence 8777643 456899999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEEeccccccccccccchhhhhhhhhH
Q psy16633 337 NNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQD 416 (540)
Q Consensus 337 ~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e~~~~~~~~~~~~~~~~~~~ 416 (540)
++++|||+++|++|||||+|.+..+|+||+|||||.|..|.|++|+...+...
T Consensus 316 -----------v~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~---------------- 368 (572)
T PRK04537 316 -----------VAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMS---------------- 368 (572)
T ss_pred -----------hhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHH----------------
Confidence 99999999999999999999999999999999999999999999998877655
Q ss_pred HHHHHHHHHhhc
Q psy16633 417 LMNDVNEYLMTN 428 (540)
Q Consensus 417 ~~~~i~~~~~~~ 428 (540)
+..+++.+..+
T Consensus 369 -l~~i~~~~~~~ 379 (572)
T PRK04537 369 -LPDIEAYIEQK 379 (572)
T ss_pred -HHHHHHHHcCC
Confidence 66777766544
No 20
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.3e-60 Score=515.68 Aligned_cols=347 Identities=32% Similarity=0.507 Sum_probs=316.6
Q ss_pred cCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcH
Q psy16633 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSK 101 (540)
Q Consensus 22 ~~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~ 101 (540)
+++|++.++++|.++||.+|||+|+++||.+++|+|++++||||||||++|++|+++.+... ..++++||++||+
T Consensus 10 ~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~-----~~~~~~LIL~PTr 84 (629)
T PRK11634 10 DLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE-----LKAPQILVLAPTR 84 (629)
T ss_pred hcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc-----cCCCeEEEEeCcH
Confidence 58899999999999999999999999999999999999999999999999999999987542 3467999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccc
Q psy16633 102 ELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVF 181 (540)
Q Consensus 102 ~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~ 181 (540)
+||.|+++.+..+.... ..+.+..++|+.+...+...+...++|+|+||+++++++....+.+ +++++||+||||.|+
T Consensus 85 eLa~Qv~~~l~~~~~~~-~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l-~~l~~lVlDEAd~ml 162 (629)
T PRK11634 85 ELAVQVAEAMTDFSKHM-RGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDL-SKLSGLVLDEADEML 162 (629)
T ss_pred HHHHHHHHHHHHHHhhc-CCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcch-hhceEEEeccHHHHh
Confidence 99999999999987654 3678888889888777777777889999999999999999888777 899999999999999
Q ss_pred cCCcHHHHHHHHHhCCcccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcCcccHHHHHHHHHH
Q psy16633 182 SFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLK 261 (540)
Q Consensus 182 ~~~~~~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~ll~ 261 (540)
+++|..++..++..+|...|+++||||+|+.+..+...++.+|..+.+..... ....+.+.++.+...+|...+..++.
T Consensus 163 ~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~-~~~~i~q~~~~v~~~~k~~~L~~~L~ 241 (629)
T PRK11634 163 RMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVT-TRPDISQSYWTVWGMRKNEALVRFLE 241 (629)
T ss_pred hcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccc-cCCceEEEEEEechhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998887765542 33457778888888888888888877
Q ss_pred hcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCccccccccccc
Q psy16633 262 LNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKR 341 (540)
Q Consensus 262 ~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~ 341 (540)
.. ...++||||+++..+..++..|.+.|+.+..+||+|++.+|..+++.|++|+++||||||
T Consensus 242 ~~-~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATd----------------- 303 (629)
T PRK11634 242 AE-DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATD----------------- 303 (629)
T ss_pred hc-CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcc-----------------
Confidence 54 346899999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEEeccccccc
Q psy16633 342 KRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDL 400 (540)
Q Consensus 342 ~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e~~~ 400 (540)
++++|||+|+|++|||||+|.+..+|+||+|||||+|+.|.+++|+.+.+...
T Consensus 304 ------v~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~ 356 (629)
T PRK11634 304 ------VAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRL 356 (629)
T ss_pred ------hHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHH
Confidence 99999999999999999999999999999999999999999999999877665
No 21
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=4.2e-60 Score=498.78 Aligned_cols=361 Identities=32% Similarity=0.504 Sum_probs=320.9
Q ss_pred cCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcH
Q psy16633 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSK 101 (540)
Q Consensus 22 ~~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~ 101 (540)
+++|++.+++++.++||..||++|+++||.+++|+|++++||||+|||++|++|+++.+..... ....+.++||++||+
T Consensus 5 ~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~-~~~~~~~~lil~Pt~ 83 (434)
T PRK11192 5 ELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPR-RKSGPPRILILTPTR 83 (434)
T ss_pred hcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccc-cCCCCceEEEECCcH
Confidence 5889999999999999999999999999999999999999999999999999999999875321 123457999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccc
Q psy16633 102 ELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVF 181 (540)
Q Consensus 102 ~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~ 181 (540)
+|+.|+++.+..++... ++.+..++|+.....+...+.++++|+|+||++|++++....+.+ ..+++|||||||+|+
T Consensus 84 eLa~Q~~~~~~~l~~~~--~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~-~~v~~lViDEah~~l 160 (434)
T PRK11192 84 ELAMQVADQARELAKHT--HLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDC-RAVETLILDEADRML 160 (434)
T ss_pred HHHHHHHHHHHHHHccC--CcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCc-ccCCEEEEECHHHHh
Confidence 99999999999998876 688889999988887777788889999999999999999887776 899999999999999
Q ss_pred cCCcHHHHHHHHHhCCcccceeeEeeeccH-HHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcC-cccHHHHHHHH
Q psy16633 182 SFGYEDDMKAVLKFLPKLYQAILASATLSE-DVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQ-EDEKATILYTL 259 (540)
Q Consensus 182 ~~~~~~~l~~i~~~l~~~~q~il~SATl~~-~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~-~~~k~~~l~~l 259 (540)
+++|...+..+...++...|+++||||++. .+..+....+.+|..+...... .....+.+++..++ ...+..++..+
T Consensus 161 ~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~i~~~~~~~~~~~~k~~~l~~l 239 (434)
T PRK11192 161 DMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSR-RERKKIHQWYYRADDLEHKTALLCHL 239 (434)
T ss_pred CCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCc-ccccCceEEEEEeCCHHHHHHHHHHH
Confidence 999999999999999988999999999985 5778888888899888765443 23345667666665 46778888888
Q ss_pred HHhcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCccccccccc
Q psy16633 260 LKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNR 339 (540)
Q Consensus 260 l~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~ 339 (540)
++. ...+++||||++++.|+.++..|...++.+..+||+|++.+|..+++.|++|.++||||||
T Consensus 240 ~~~-~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd--------------- 303 (434)
T PRK11192 240 LKQ-PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATD--------------- 303 (434)
T ss_pred Hhc-CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEcc---------------
Confidence 764 2457999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEEeccccccccccccchhhhhhhhhHHHH
Q psy16633 340 KRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMN 419 (540)
Q Consensus 340 ~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 419 (540)
++++|||+|++++|||||+|.|...|+||+|||||+|..|.+++|+...+... +.
T Consensus 304 --------~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~-----------------~~ 358 (434)
T PRK11192 304 --------VAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLL-----------------LG 358 (434)
T ss_pred --------ccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHH-----------------HH
Confidence 99999999999999999999999999999999999999999999998877766 77
Q ss_pred HHHHHHhhc
Q psy16633 420 DVNEYLMTN 428 (540)
Q Consensus 420 ~i~~~~~~~ 428 (540)
.+++++...
T Consensus 359 ~i~~~~~~~ 367 (434)
T PRK11192 359 KIERYIEEP 367 (434)
T ss_pred HHHHHHhcc
Confidence 787776543
No 22
>KOG0336|consensus
Probab=100.00 E-value=2.7e-61 Score=463.25 Aligned_cols=362 Identities=28% Similarity=0.414 Sum_probs=333.3
Q ss_pred CCccchhcccCCccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcc-cc
Q psy16633 9 EPTLIQVYFELPFTFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQ-TA 87 (540)
Q Consensus 9 ~~~~~~~~~~~~~~~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~-~~ 87 (540)
.|.|.-+|.. .|+..+++++.+++.||..|||+|.+|+|.+|+|+|++..|.||+|||++|++|-+-++..... ..
T Consensus 214 IPnP~ctFdd---AFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~ 290 (629)
T KOG0336|consen 214 IPNPVCTFDD---AFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRRE 290 (629)
T ss_pred CCCCcCcHHH---HHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhh
Confidence 5666767776 7788999999999999999999999999999999999999999999999999998877654322 23
Q ss_pred cCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccC
Q psy16633 88 QVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKS 167 (540)
Q Consensus 88 ~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~ 167 (540)
...++.+|+++||++|+.|+.-...++.- .+....+++|+.+...+...+..+.+|+++||++|.++...+.+++ .
T Consensus 291 qr~~p~~lvl~ptreLalqie~e~~kysy---ng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l-~ 366 (629)
T KOG0336|consen 291 QRNGPGVLVLTPTRELALQIEGEVKKYSY---NGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINL-A 366 (629)
T ss_pred ccCCCceEEEeccHHHHHHHHhHHhHhhh---cCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeee-e
Confidence 46789999999999999999888777642 3567788888889999999999999999999999999999999988 9
Q ss_pred CccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEc
Q psy16633 168 SLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILA 247 (540)
Q Consensus 168 ~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~ 247 (540)
++.++|+||||.|+++||+..+++|+--+.+.+|+++.|||+|+.+..+...++.+|+++....-+......++|..+..
T Consensus 367 siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~ 446 (629)
T KOG0336|consen 367 SITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVT 446 (629)
T ss_pred eeEEEEecchhhhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEec
Confidence 99999999999999999999999999999999999999999999999999999999999998887777778899999888
Q ss_pred CcccHHHHHHHHHHhcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCc
Q psy16633 248 QEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327 (540)
Q Consensus 248 ~~~~k~~~l~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~ 327 (540)
.+.+|+.++..+++......|+||||..+..|..|..-|.-.|+.+-.+||+-.+.+|+..++.|+.|+++||||||
T Consensus 447 ~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTD--- 523 (629)
T KOG0336|consen 447 TDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATD--- 523 (629)
T ss_pred ccHHHHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEec---
Confidence 89999999999998877888999999999999999998888899999999999999999999999999999999999
Q ss_pred cCCcccccccccccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEEeccccccc
Q psy16633 328 LETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDL 400 (540)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e~~~ 400 (540)
.++||+|++++.+|+|||+|.+++.|+||+||+||+|+.|.+++|++.++...
T Consensus 524 --------------------laSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~ 576 (629)
T KOG0336|consen 524 --------------------LASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSM 576 (629)
T ss_pred --------------------hhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHH
Confidence 89999999999999999999999999999999999999999999999888655
No 23
>KOG0335|consensus
Probab=100.00 E-value=1.8e-59 Score=470.14 Aligned_cols=368 Identities=28% Similarity=0.442 Sum_probs=328.3
Q ss_pred cccccccCCccchhcccCCccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHH
Q psy16633 2 IAKLGWLEPTLIQVYFELPFTFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII 81 (540)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~ 81 (540)
+...|...|..+..|.+ -.+++.+...++..|+..|||+|+.+||.+..|+|++++|+||||||.||++|++..++
T Consensus 62 v~~~G~~~p~~i~~f~~----~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~ 137 (482)
T KOG0335|consen 62 VKVSGRDVPPHIPTFDE----AILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLL 137 (482)
T ss_pred eeccCCccCCCcccccc----cchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHH
Confidence 34567778888887775 34788999999999999999999999999999999999999999999999999999998
Q ss_pred hhccc-----ccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHH
Q psy16633 82 NLKQT-----AQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALA 156 (540)
Q Consensus 82 ~~~~~-----~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~ 156 (540)
+.... .....+++||++|||||+.|+++..+++.... .+.+...+|+.+...+...+..+++|+|+||++|.+
T Consensus 138 ~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s--~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d 215 (482)
T KOG0335|consen 138 DEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLS--GMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKD 215 (482)
T ss_pred hcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccc--cceeeeeeCCcchhhhhhhhccCccEEEecCchhhh
Confidence 75431 11235899999999999999999999987655 788899999999888988999999999999999999
Q ss_pred HHhcCcCCccCCccEEEEcCcccccc-CCcHHHHHHHHHhCCc----ccceeeEeeeccHHHHHHHHHhcCC-CeEEEec
Q psy16633 157 HLKAKTLDLKSSLEIVIIDEADLVFS-FGYEDDMKAVLKFLPK----LYQAILASATLSEDVLSLKHLILRN-PVILKLE 230 (540)
Q Consensus 157 ~l~~~~~~~~~~l~~lViDEah~l~~-~~~~~~l~~i~~~l~~----~~q~il~SATl~~~~~~~~~~~l~~-p~~i~~~ 230 (540)
++..+.+.+ ..++++|+||||.|+| ++|+.++++|+..... ..|.++||||.|..+..++..++.+ ...+.+.
T Consensus 216 ~~e~g~i~l-~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~ 294 (482)
T KOG0335|consen 216 LIERGKISL-DNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVG 294 (482)
T ss_pred hhhcceeeh-hhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEe
Confidence 999999998 9999999999999999 9999999999987643 7899999999999999988888876 5566655
Q ss_pred CCCCCCCCCeEEEEEEcCcccHHHHHHHHHHhcc---cCC-----cEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCH
Q psy16633 231 EPAIAPVSQLAHYHILAQEDEKATILYTLLKLNL---VQG-----KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPA 302 (540)
Q Consensus 231 ~~~~~~~~~l~~~~~~~~~~~k~~~l~~ll~~~~---~~~-----k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~ 302 (540)
... .....+.|....+.+.+|...|..++.... ..+ +++|||.++..|..+..+|.+.++++..+||.-++
T Consensus 295 rvg-~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq 373 (482)
T KOG0335|consen 295 RVG-STSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQ 373 (482)
T ss_pred eec-cccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhh
Confidence 443 344678888899999999888888887433 344 89999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCccEEEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccC
Q psy16633 303 KARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTAR 382 (540)
Q Consensus 303 ~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR 382 (540)
.+|...+..|+.|.+.+||||+ +++||+|+|+|++|||||+|.+..+|+||+|||||
T Consensus 374 ~er~~al~~Fr~g~~pvlVaT~-----------------------VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR 430 (482)
T KOG0335|consen 374 IEREQALNDFRNGKAPVLVATN-----------------------VAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGR 430 (482)
T ss_pred hHHHHHHHHhhcCCcceEEEeh-----------------------hhhcCCCCCCCceeEEeecCcchhhHHHhcccccc
Confidence 9999999999999999999999 89999999999999999999999999999999999
Q ss_pred CCCCceEEEEeccccccc
Q psy16633 383 GKNQGTALSFVSLREQDL 400 (540)
Q Consensus 383 ~g~~g~~i~~~~~~e~~~ 400 (540)
+|+.|.+.+|++......
T Consensus 431 ~Gn~G~atsf~n~~~~~i 448 (482)
T KOG0335|consen 431 VGNGGRATSFFNEKNQNI 448 (482)
T ss_pred CCCCceeEEEeccccchh
Confidence 999999999999655544
No 24
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=6.3e-58 Score=486.61 Aligned_cols=362 Identities=28% Similarity=0.459 Sum_probs=317.9
Q ss_pred cCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccc--cCCCeEEEEEcC
Q psy16633 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTA--QVQETKALVLSP 99 (540)
Q Consensus 22 ~~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~--~~~~~~vlil~P 99 (540)
+++|++.++++|.++||.+||++|.++|+.+++|+|+++.||||||||++|++|+++.+++..... .....++|||+|
T Consensus 91 ~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~P 170 (475)
T PRK01297 91 DFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAP 170 (475)
T ss_pred HCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeC
Confidence 688999999999999999999999999999999999999999999999999999999997643211 112579999999
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhh-hCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCcc
Q psy16633 100 SKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLL-VERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEAD 178 (540)
Q Consensus 100 t~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l-~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah 178 (540)
|++|+.|+++.++.+.... ++.+..+.|+.+...+...+ ...++|+|+||++|++++......+ +++++|||||||
T Consensus 171 treLa~Q~~~~~~~l~~~~--~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l-~~l~~lViDEah 247 (475)
T PRK01297 171 TRELVVQIAKDAAALTKYT--GLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHL-DMVEVMVLDEAD 247 (475)
T ss_pred cHHHHHHHHHHHHHhhccC--CCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCccc-ccCceEEechHH
Confidence 9999999999999998766 57777788877665554444 3568999999999999888777666 899999999999
Q ss_pred ccccCCcHHHHHHHHHhCCc--ccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcCcccHHHHH
Q psy16633 179 LVFSFGYEDDMKAVLKFLPK--LYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATIL 256 (540)
Q Consensus 179 ~l~~~~~~~~l~~i~~~l~~--~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~~~k~~~l 256 (540)
.+++++|...+..++..++. ..|++++|||++.++..+...++.+|..+.+..... ....+.+++..+...++...+
T Consensus 248 ~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~k~~~l 326 (475)
T PRK01297 248 RMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENV-ASDTVEQHVYAVAGSDKYKLL 326 (475)
T ss_pred HHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcC-CCCcccEEEEEecchhHHHHH
Confidence 99999999999999998864 579999999999999999999999998887765442 234456666777777888888
Q ss_pred HHHHHhcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccc
Q psy16633 257 YTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINST 336 (540)
Q Consensus 257 ~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~ 336 (540)
..++... ...++||||+++..|+.++..|.+.++.+..+||++++.+|..+++.|++|++++||||+
T Consensus 327 ~~ll~~~-~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~------------ 393 (475)
T PRK01297 327 YNLVTQN-PWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATD------------ 393 (475)
T ss_pred HHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEcc------------
Confidence 8887743 356899999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEEeccccccccccccchhhhhhhhhH
Q psy16633 337 NNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQD 416 (540)
Q Consensus 337 ~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e~~~~~~~~~~~~~~~~~~~ 416 (540)
++++|||++++++||+||+|.|..+|+||+||+||.|..|.+++|+..+|...
T Consensus 394 -----------~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~---------------- 446 (475)
T PRK01297 394 -----------VAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQ---------------- 446 (475)
T ss_pred -----------ccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHH----------------
Confidence 99999999999999999999999999999999999999999999999877666
Q ss_pred HHHHHHHHHhhc
Q psy16633 417 LMNDVNEYLMTN 428 (540)
Q Consensus 417 ~~~~i~~~~~~~ 428 (540)
+..+++.++.+
T Consensus 447 -~~~~~~~~~~~ 457 (475)
T PRK01297 447 -LPEIEELLGRK 457 (475)
T ss_pred -HHHHHHHhCCC
Confidence 78888887665
No 25
>KOG0339|consensus
Probab=100.00 E-value=1.2e-58 Score=455.56 Aligned_cols=368 Identities=27% Similarity=0.408 Sum_probs=337.1
Q ss_pred cccccccCCccchhcccCCccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHH
Q psy16633 2 IAKLGWLEPTLIQVYFELPFTFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII 81 (540)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~ 81 (540)
|++.|..+|+++.+|.. +|++..|..++.+..|.+|||+|.+++|.++.|+|++-.|.||||||.||+.|++.++.
T Consensus 211 lrv~g~s~~rpvtsfeh----~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~him 286 (731)
T KOG0339|consen 211 LRVSGSSPPRPVTSFEH----FGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIM 286 (731)
T ss_pred ceeccCCCCCCcchhhh----cCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhc
Confidence 57788889999999887 78899999999999999999999999999999999999999999999999999999998
Q ss_pred hhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcC
Q psy16633 82 NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAK 161 (540)
Q Consensus 82 ~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~ 161 (540)
..+......++..||+|||||||.|++..+++++.-. +++++.++||.....|...+..++.||||||++|++++...
T Consensus 287 dq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~y--gl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmK 364 (731)
T KOG0339|consen 287 DQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAY--GLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMK 364 (731)
T ss_pred chhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhc--cceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhh
Confidence 7766556789999999999999999999999998866 89999999999999999999999999999999999999999
Q ss_pred cCCccCCccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeE
Q psy16633 162 TLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLA 241 (540)
Q Consensus 162 ~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~ 241 (540)
..++ .++++|||||||+|++.||...++.|..++.+.+|+++||||++..++.+...++.+|+.+...+..... ..+.
T Consensus 365 atn~-~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean-~dIT 442 (731)
T KOG0339|consen 365 ATNL-SRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEAN-EDIT 442 (731)
T ss_pred cccc-eeeeEEEEechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccc-cchh
Confidence 9988 9999999999999999999999999999999999999999999999999999999999877665444333 3455
Q ss_pred EEEEE-cCcccHHHHHHHHHHhcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEE
Q psy16633 242 HYHIL-AQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVI 320 (540)
Q Consensus 242 ~~~~~-~~~~~k~~~l~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iL 320 (540)
|.+.. .++..|+..|..-|-.....|++||||.-+..++.+...|.-.++.+..+||++.+.+|.+++.+|+++...||
T Consensus 443 Q~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~Vl 522 (731)
T KOG0339|consen 443 QTVSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVL 522 (731)
T ss_pred heeeeccCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceE
Confidence 55444 45667777666555545567899999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEEeccccccc
Q psy16633 321 IASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDL 400 (540)
Q Consensus 321 IaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e~~~ 400 (540)
|||| ..+||+|++++..|||||+-.+++.|.||+||+||+|..|.++++++..+...
T Consensus 523 vatD-----------------------vaargldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~f 579 (731)
T KOG0339|consen 523 VATD-----------------------VAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEF 579 (731)
T ss_pred EEee-----------------------HhhcCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHH
Confidence 9999 89999999999999999999999999999999999999999999999888764
No 26
>KOG0341|consensus
Probab=100.00 E-value=2.2e-60 Score=454.16 Aligned_cols=362 Identities=28% Similarity=0.426 Sum_probs=321.8
Q ss_pred cccccCCccchhcccCCccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhh
Q psy16633 4 KLGWLEPTLIQVYFELPFTFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINL 83 (540)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~ 83 (540)
+-|...|.+|.+|-+|-| +..+++.|++.|+.+|||+|.+-+|.+++|+|.+-.|-||||||++|++|++...++.
T Consensus 160 veGd~ipPPIksF~eMKF----P~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~Leq 235 (610)
T KOG0341|consen 160 VEGDDIPPPIKSFKEMKF----PKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQ 235 (610)
T ss_pred eeCCCCCCchhhhhhccC----CHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHH
Confidence 456677888899888776 7889999999999999999999999999999999999999999999999999887764
Q ss_pred cc---cccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhc----CCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHH
Q psy16633 84 KQ---TAQVQETKALVLSPSKELCNQLHKNIQELTMKC----SRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALA 156 (540)
Q Consensus 84 ~~---~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~----~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~ 156 (540)
.- -....|+..||+||+||||.|.++.+..+.... -+.+++..+.||.+...+......+.+|+|+||++|.+
T Consensus 236 E~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~D 315 (610)
T KOG0341|consen 236 EMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMD 315 (610)
T ss_pred HhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHH
Confidence 22 234679999999999999999999988876543 23577888889999999999999999999999999999
Q ss_pred HHhcCcCCccCCccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCC
Q psy16633 157 HLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAP 236 (540)
Q Consensus 157 ~l~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~ 236 (540)
++....+++ .-+.++++||||+|++.||+++++.++.++...+|+++||||+|..++.+++.-+-.|+++++.......
T Consensus 316 mL~KK~~sL-d~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAs 394 (610)
T KOG0341|consen 316 MLAKKIMSL-DACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAAS 394 (610)
T ss_pred HHHHhhccH-HHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccccccc
Confidence 999998888 8899999999999999999999999999999999999999999999999999999999999998766444
Q ss_pred CCCeEEEEEEcCcccHHHHHHHHHHhcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCC
Q psy16633 237 VSQLAHYHILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGL 316 (540)
Q Consensus 237 ~~~l~~~~~~~~~~~k~~~l~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~ 316 (540)
.+-+ |..-.+..+.|...+...++. ...++||||..+.++..+.++|--.|+.+..+||+-++++|...++.|+.|+
T Consensus 395 ldVi-QevEyVkqEaKiVylLeCLQK--T~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gk 471 (610)
T KOG0341|consen 395 LDVI-QEVEYVKQEAKIVYLLECLQK--TSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGK 471 (610)
T ss_pred hhHH-HHHHHHHhhhhhhhHHHHhcc--CCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCC
Confidence 3322 222234455666666665543 3568999999999999999999889999999999999999999999999999
Q ss_pred ccEEEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEEeccc
Q psy16633 317 YDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLR 396 (540)
Q Consensus 317 ~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~ 396 (540)
.+|||||| +++.|+|||++.+|||||+|..+++|+||+|||||.|+.|.+-+|++.+
T Consensus 472 KDVLVATD-----------------------VASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~ 528 (610)
T KOG0341|consen 472 KDVLVATD-----------------------VASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKN 528 (610)
T ss_pred CceEEEec-----------------------chhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeeccc
Confidence 99999999 8999999999999999999999999999999999999999999999854
No 27
>KOG0347|consensus
Probab=100.00 E-value=2.1e-59 Score=465.34 Aligned_cols=351 Identities=30% Similarity=0.479 Sum_probs=307.6
Q ss_pred cCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcC-CcEEEEcCCCchHHHHHHHHHHHHHHhhccc------ccCCCeE-
Q psy16633 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQN-KDVLVRARTGSGKTGAFAIPMIQKIINLKQT------AQVQETK- 93 (540)
Q Consensus 22 ~~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~g-kd~li~a~TGsGKT~a~~ipil~~l~~~~~~------~~~~~~~- 93 (540)
.|+|+..++++|..+||..||+||..+||.+.+| .|++-.|.||||||+||-|||+..+++.... ....+++
T Consensus 185 ~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~ 264 (731)
T KOG0347|consen 185 NLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKP 264 (731)
T ss_pred cCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcc
Confidence 5789999999999999999999999999999999 6999999999999999999999966653221 1223444
Q ss_pred -EEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCC--ccCCcc
Q psy16633 94 -ALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLD--LKSSLE 170 (540)
Q Consensus 94 -vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~--~~~~l~ 170 (540)
+||++||||||.|+...+..++.+. .+++..++||.....|.+.+...|+|||+|||+|+.++..+... -++.++
T Consensus 265 ~~LV~tPTRELa~QV~~Hl~ai~~~t--~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vk 342 (731)
T KOG0347|consen 265 IALVVTPTRELAHQVKQHLKAIAEKT--QIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVK 342 (731)
T ss_pred eeEEecChHHHHHHHHHHHHHhcccc--CeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhce
Confidence 9999999999999999999999876 89999999999999999999999999999999999999876532 227899
Q ss_pred EEEEcCccccccCCcHHHHHHHHHhCC-----cccceeeEeeeccHH---------------------HHHHHHH--hcC
Q psy16633 171 IVIIDEADLVFSFGYEDDMKAVLKFLP-----KLYQAILASATLSED---------------------VLSLKHL--ILR 222 (540)
Q Consensus 171 ~lViDEah~l~~~~~~~~l~~i~~~l~-----~~~q~il~SATl~~~---------------------~~~~~~~--~l~ 222 (540)
++|+||+|+|++.|+.+.+..+++.+. ...|++.||||++-. ++.+.+. +..
T Consensus 343 cLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~ 422 (731)
T KOG0347|consen 343 CLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRG 422 (731)
T ss_pred EEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCccC
Confidence 999999999999999999999998886 357999999998532 2223322 345
Q ss_pred CCeEEEecCCCCCCCCCeEEEEEEcCcccHHHHHHHHHHhcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCH
Q psy16633 223 NPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPA 302 (540)
Q Consensus 223 ~p~~i~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~ 302 (540)
+|.++.++... .....+....+.|+..+|...||.++.. -+|++|||||+++.+.+|+-+|...++....+|+.|.|
T Consensus 423 kpkiiD~t~q~-~ta~~l~Es~I~C~~~eKD~ylyYfl~r--yPGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~Q 499 (731)
T KOG0347|consen 423 KPKIIDLTPQS-ATASTLTESLIECPPLEKDLYLYYFLTR--YPGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQ 499 (731)
T ss_pred CCeeEecCcch-hHHHHHHHHhhcCCccccceeEEEEEee--cCCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHH
Confidence 67888877553 3445677777888888888888877754 47899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCccEEEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccC
Q psy16633 303 KARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTAR 382 (540)
Q Consensus 303 ~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR 382 (540)
++|...+++|.+..-.|||||| +++||+|+|+|.+||||..|.+.+-|+||.|||+|
T Consensus 500 KqRLknLEkF~~~~~~VLiaTD-----------------------VAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTAR 556 (731)
T KOG0347|consen 500 KQRLKNLEKFKQSPSGVLIATD-----------------------VAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTAR 556 (731)
T ss_pred HHHHHhHHHHhcCCCeEEEeeh-----------------------hhhccCCCCCcceEEEeecCCccceeEeccccccc
Confidence 9999999999999999999999 89999999999999999999999999999999999
Q ss_pred CCCCceEEEEeccccccc
Q psy16633 383 GKNQGTALSFVSLREQDL 400 (540)
Q Consensus 383 ~g~~g~~i~~~~~~e~~~ 400 (540)
++..|.+++++.|.+...
T Consensus 557 A~~~Gvsvml~~P~e~~~ 574 (731)
T KOG0347|consen 557 ANSEGVSVMLCGPQEVGP 574 (731)
T ss_pred ccCCCeEEEEeChHHhHH
Confidence 999999999999998765
No 28
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=4.8e-56 Score=464.17 Aligned_cols=357 Identities=28% Similarity=0.435 Sum_probs=311.1
Q ss_pred cCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcH
Q psy16633 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSK 101 (540)
Q Consensus 22 ~~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~ 101 (540)
+++|++.+.+++.++||..||++|.+||+.+++|+|+++.||||||||++|++|+++.+.. ...+.++||++||+
T Consensus 32 ~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~-----~~~~~~~lil~Pt~ 106 (401)
T PTZ00424 32 ALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDY-----DLNACQALILAPTR 106 (401)
T ss_pred hCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcC-----CCCCceEEEECCCH
Confidence 6789999999999999999999999999999999999999999999999999999988732 13567899999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccc
Q psy16633 102 ELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVF 181 (540)
Q Consensus 102 ~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~ 181 (540)
+|+.|+.+.+..++... .+.+..+.|+.....+...+..+++|+|+||+++.+++......+ +++++|||||||++.
T Consensus 107 ~L~~Q~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l-~~i~lvViDEah~~~ 183 (401)
T PTZ00424 107 ELAQQIQKVVLALGDYL--KVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRV-DDLKLFILDEADEML 183 (401)
T ss_pred HHHHHHHHHHHHHhhhc--CceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCccc-ccccEEEEecHHHHH
Confidence 99999999999988655 566777777776655555666778999999999999998877666 899999999999999
Q ss_pred cCCcHHHHHHHHHhCCcccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcCc-ccHHHHHHHHH
Q psy16633 182 SFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQE-DEKATILYTLL 260 (540)
Q Consensus 182 ~~~~~~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~-~~k~~~l~~ll 260 (540)
+++|...+..++..++...|++++|||+++.+..+...++.+|..+....... ....+.+++..+.. ..+...+..++
T Consensus 184 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~ 262 (401)
T PTZ00424 184 SRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDEL-TLEGIRQFYVAVEKEEWKFDTLCDLY 262 (401)
T ss_pred hcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCc-ccCCceEEEEecChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988888888887766554332 33456666666553 34555566655
Q ss_pred HhcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccccccc
Q psy16633 261 KLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRK 340 (540)
Q Consensus 261 ~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~ 340 (540)
+.. ...++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+++|||||+
T Consensus 263 ~~~-~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~---------------- 325 (401)
T PTZ00424 263 ETL-TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTD---------------- 325 (401)
T ss_pred Hhc-CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcc----------------
Confidence 532 356899999999999999999999999999999999999999999999999999999999
Q ss_pred cccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEEeccccccccccccchhhhhhhhhHHHHH
Q psy16633 341 RKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMND 420 (540)
Q Consensus 341 ~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 420 (540)
++++|+|+|++++||+||+|.|..+|+||+||+||.|+.|.|++|+++++... +..
T Consensus 326 -------~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~-----------------~~~ 381 (401)
T PTZ00424 326 -------LLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQ-----------------LKE 381 (401)
T ss_pred -------cccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHH-----------------HHH
Confidence 99999999999999999999999999999999999999999999999888776 777
Q ss_pred HHHHHhhc
Q psy16633 421 VNEYLMTN 428 (540)
Q Consensus 421 i~~~~~~~ 428 (540)
+++.+...
T Consensus 382 ~e~~~~~~ 389 (401)
T PTZ00424 382 IERHYNTQ 389 (401)
T ss_pred HHHHHCCc
Confidence 87776543
No 29
>KOG0332|consensus
Probab=100.00 E-value=2.8e-55 Score=418.13 Aligned_cols=354 Identities=26% Similarity=0.455 Sum_probs=309.5
Q ss_pred cCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcC
Q psy16633 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQN--KDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSP 99 (540)
Q Consensus 22 ~~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~g--kd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~P 99 (540)
+++|.|.+++++-.++|..|+.+|+.|+|.++.. +++|.++..|+|||+||.+.+|.++- .....+.++.|+|
T Consensus 94 eL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd-----~~~~~PQ~iCLaP 168 (477)
T KOG0332|consen 94 ELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVD-----PDVVVPQCICLAP 168 (477)
T ss_pred hhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcC-----ccccCCCceeeCc
Confidence 5889999999999999999999999999999985 78999999999999999999998862 2345788999999
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhc-CcCCccCCccEEEEcCcc
Q psy16633 100 SKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKA-KTLDLKSSLEIVIIDEAD 178 (540)
Q Consensus 100 t~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~-~~~~~~~~l~~lViDEah 178 (540)
||+||.|+.+.+.+.+.++ .+.......+.....-.. =...|+|+||+.+++++.. .-+.+ ..++++|+||||
T Consensus 169 trELA~Q~~eVv~eMGKf~--~ita~yair~sk~~rG~~---i~eqIviGTPGtv~Dlm~klk~id~-~kikvfVlDEAD 242 (477)
T KOG0332|consen 169 TRELAPQTGEVVEEMGKFT--ELTASYAIRGSKAKRGNK---LTEQIVIGTPGTVLDLMLKLKCIDL-EKIKVFVLDEAD 242 (477)
T ss_pred hHHHHHHHHHHHHHhcCce--eeeEEEEecCcccccCCc---chhheeeCCCccHHHHHHHHHhhCh-hhceEEEecchh
Confidence 9999999999999999887 555544444332211111 1357999999999999988 44555 899999999999
Q ss_pred ccccC-CcHHHHHHHHHhCCcccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcC-cccHHHHH
Q psy16633 179 LVFSF-GYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQ-EDEKATIL 256 (540)
Q Consensus 179 ~l~~~-~~~~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~-~~~k~~~l 256 (540)
.|++. ||.+.-..|...+|+++|++++|||..+.+..+....+.+|..+.+...+.. ...+.|+|+.|. +.+|+..+
T Consensus 243 ~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~-L~~IkQlyv~C~~~~~K~~~l 321 (477)
T KOG0332|consen 243 VMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELA-LDNIKQLYVLCACRDDKYQAL 321 (477)
T ss_pred hhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhcc-ccchhhheeeccchhhHHHHH
Confidence 88865 7999999999999999999999999999999999999999999988877654 467889998886 67899999
Q ss_pred HHHHHhcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccc
Q psy16633 257 YTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINST 336 (540)
Q Consensus 257 ~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~ 336 (540)
..+.... .-|..||||.+++.|..++..|.+.|..+..+||+|...+|..++++|+.|..+|||+|+
T Consensus 322 ~~lyg~~-tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTn------------ 388 (477)
T KOG0332|consen 322 VNLYGLL-TIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTN------------ 388 (477)
T ss_pred HHHHhhh-hhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEec------------
Confidence 8876644 457999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCccccccccCCCCCcCEEEeCCCCC------CcccchhccccccCCCCCceEEEEecccc-ccccccccchhh
Q psy16633 337 NNRKRKRDKESGVSRGIDFQFVSNVINFDFPL------DIQCYIHRAGRTARGKNQGTALSFVSLRE-QDLMNDGTALSF 409 (540)
Q Consensus 337 ~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~------s~~~yiqr~GRagR~g~~g~~i~~~~~~e-~~~~~~~~~~~~ 409 (540)
+++||||++.|++|||||+|. +.++|+||+|||||.|+.|.++.++...+ ...
T Consensus 389 -----------V~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~--------- 448 (477)
T KOG0332|consen 389 -----------VCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNI--------- 448 (477)
T ss_pred -----------hhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHH---------
Confidence 899999999999999999994 78999999999999999999999987544 333
Q ss_pred hhhhhhHHHHHHHHHHhhc
Q psy16633 410 VSLREQDLMNDVNEYLMTN 428 (540)
Q Consensus 410 ~~~~~~~~~~~i~~~~~~~ 428 (540)
+..|+++++.+
T Consensus 449 --------mn~iq~~F~~~ 459 (477)
T KOG0332|consen 449 --------MNKIQKHFNMK 459 (477)
T ss_pred --------HHHHHHHHhhc
Confidence 88899998765
No 30
>KOG0337|consensus
Probab=100.00 E-value=1.4e-55 Score=425.98 Aligned_cols=350 Identities=34% Similarity=0.486 Sum_probs=324.9
Q ss_pred cCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcH
Q psy16633 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSK 101 (540)
Q Consensus 22 ~~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~ 101 (540)
++||+..+++++.+-||..|||+|++.||.+++|+|++..|.||||||+||++|+++++... ...+.++++++||+
T Consensus 25 smgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~----s~~g~Ralilsptr 100 (529)
T KOG0337|consen 25 SMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSH----SQTGLRALILSPTR 100 (529)
T ss_pred ccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhc----cccccceeeccCcH
Confidence 68999999999999999999999999999999999999999999999999999999998653 24688999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccc
Q psy16633 102 ELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVF 181 (540)
Q Consensus 102 ~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~ 181 (540)
+|+.|..+.++.++... ..++..+.|+.....+...+..++|||++||++++.+.-.-.+.+ +.+.++|+||||.++
T Consensus 101 eLa~qtlkvvkdlgrgt--~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l-~sveyVVfdEadrlf 177 (529)
T KOG0337|consen 101 ELALQTLKVVKDLGRGT--KLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTL-SSVEYVVFDEADRLF 177 (529)
T ss_pred HHHHHHHHHHHHhcccc--chhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccc-cceeeeeehhhhHHH
Confidence 99999999999999866 788888899999999999999999999999999988776666677 999999999999999
Q ss_pred cCCcHHHHHHHHHhCCcccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcCcccHHHHHHHHHH
Q psy16633 182 SFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLK 261 (540)
Q Consensus 182 ~~~~~~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~ll~ 261 (540)
..||.+.+.+++..+|...|+++||||+|..+..+.+..+.+|+.++++-+. ...+.++..+..+...+|...|..++.
T Consensus 178 emgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvet-kise~lk~~f~~~~~a~K~aaLl~il~ 256 (529)
T KOG0337|consen 178 EMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVET-KISELLKVRFFRVRKAEKEAALLSILG 256 (529)
T ss_pred hhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhh-hcchhhhhheeeeccHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999977553 344567777888889999999998888
Q ss_pred hcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCccccccccccc
Q psy16633 262 LNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKR 341 (540)
Q Consensus 262 ~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~ 341 (540)
......+++|||.+...++.+...|..+|+.+..++|.|++..|..-+..|+.++..+||.||
T Consensus 257 ~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTd----------------- 319 (529)
T KOG0337|consen 257 GRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTD----------------- 319 (529)
T ss_pred ccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEeh-----------------
Confidence 665566899999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEEeccccccccc
Q psy16633 342 KRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMN 402 (540)
Q Consensus 342 ~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e~~~~~ 402 (540)
+.+||+|+|-.+.|||||+|.+..-|+||+||++|+|+.|.++++|.+.+..++.
T Consensus 320 ------vaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~ 374 (529)
T KOG0337|consen 320 ------VAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLL 374 (529)
T ss_pred ------hhhccCCCccccccccccCCCCCceEEEEecchhhccccceEEEEEecccchhhh
Confidence 8999999999999999999999999999999999999999999999999988743
No 31
>KOG0334|consensus
Probab=100.00 E-value=1.2e-54 Score=463.45 Aligned_cols=366 Identities=30% Similarity=0.454 Sum_probs=333.8
Q ss_pred ccccCCccchhcccCCccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhc
Q psy16633 5 LGWLEPTLIQVYFELPFTFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLK 84 (540)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~ 84 (540)
-|--.|.++.+|.+ .|+...|+..++++||..||+||.+|||.|+.|+|+|..|.||||||++|++|++.++....
T Consensus 356 ~g~~~pkpv~sW~q----~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr 431 (997)
T KOG0334|consen 356 KGKECPKPVTSWTQ----CGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQR 431 (997)
T ss_pred ccCCCCcccchHhh----CCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCC
Confidence 34457899999888 67999999999999999999999999999999999999999999999999999998877655
Q ss_pred ccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcC--c
Q psy16633 85 QTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAK--T 162 (540)
Q Consensus 85 ~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~--~ 162 (540)
......|+.+||++||++|+.|+++.++.|.... ++.++.++|+.....+...+..++.|+||||+++.+.+-.+ .
T Consensus 432 ~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l--~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~gr 509 (997)
T KOG0334|consen 432 PLEEGDGPIALILAPTRELAMQIHREVRKFLKLL--GIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGR 509 (997)
T ss_pred ChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhc--CceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCc
Confidence 5555679999999999999999999999998875 89999999999999999999999999999999999988543 3
Q ss_pred CCccCCccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEE
Q psy16633 163 LDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAH 242 (540)
Q Consensus 163 ~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~ 242 (540)
+.-+.++.++|+||||+|++.+|...+..|+..+++.+|++++|||+|..+..++...++.|+.+.+... ......+.+
T Consensus 510 vtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~-svV~k~V~q 588 (997)
T KOG0334|consen 510 VTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGR-SVVCKEVTQ 588 (997)
T ss_pred cccccccceeeechhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccc-eeEeccceE
Confidence 3322666799999999999999999999999999999999999999999999999999999998776643 344456777
Q ss_pred EEEEcC-cccHHHHHHHHHHhcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEE
Q psy16633 243 YHILAQ-EDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVII 321 (540)
Q Consensus 243 ~~~~~~-~~~k~~~l~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLI 321 (540)
.+..+. +.+|+..|..++......+++||||.+.+.|..+..-|.+.|+.|..+||+.++.+|..+++.|++|.+++||
T Consensus 589 ~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLv 668 (997)
T KOG0334|consen 589 VVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLV 668 (997)
T ss_pred EEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEE
Confidence 777777 9999999999999888899999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCccCCcccccccccccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEEeccccccc
Q psy16633 322 ASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDL 400 (540)
Q Consensus 322 aT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e~~~ 400 (540)
||+ .++||+|++++.+|||||+|...+.|+||+|||||+|++|.|++|+.+.+..+
T Consensus 669 aTs-----------------------vvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~ 724 (997)
T KOG0334|consen 669 ATS-----------------------VVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKY 724 (997)
T ss_pred ehh-----------------------hhhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhh
Confidence 999 89999999999999999999999999999999999999999999999966544
No 32
>KOG0327|consensus
Probab=100.00 E-value=1e-54 Score=418.12 Aligned_cols=355 Identities=31% Similarity=0.509 Sum_probs=325.3
Q ss_pred cCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcH
Q psy16633 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSK 101 (540)
Q Consensus 22 ~~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~ 101 (540)
+++|.+.+++.+...||+.|+.+|+.||+.+..|.|+.+++++|+|||.+|.+++++.+-. ......++++.||+
T Consensus 30 dm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~-----~~ke~qalilaPtr 104 (397)
T KOG0327|consen 30 DMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDM-----SVKETQALILAPTR 104 (397)
T ss_pred hcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCc-----chHHHHHHHhcchH
Confidence 6899999999999999999999999999999999999999999999999999999998732 24567899999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchh-hhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCcccc
Q psy16633 102 ELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEP-LLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLV 180 (540)
Q Consensus 102 ~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~-~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l 180 (540)
+||.|+......++... ++++..+.|+.....+.. .....++|+++||+++.+++..+.+.. ..++++|+||||.|
T Consensus 105 eLa~qi~~v~~~lg~~~--~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~-~~iKmfvlDEaDEm 181 (397)
T KOG0327|consen 105 ELAQQIQKVVRALGDHM--DVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLST-DGIKMFVLDEADEM 181 (397)
T ss_pred HHHHHHHHHHHhhhccc--ceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccc-cceeEEeecchHhh
Confidence 99999999999998877 677777777776664443 344568999999999999999886665 78999999999999
Q ss_pred ccCCcHHHHHHHHHhCCcccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcCcccHHHHHHHHH
Q psy16633 181 FSFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLL 260 (540)
Q Consensus 181 ~~~~~~~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~ll 260 (540)
++.||.+.+..++..+|+..|++++|||+|.++....+.++++|+.+.....+.. ...++|+++.+..+.|...++.+.
T Consensus 182 Ls~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~lt-l~gikq~~i~v~k~~k~~~l~dl~ 260 (397)
T KOG0327|consen 182 LSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELT-LEGIKQFYINVEKEEKLDTLCDLY 260 (397)
T ss_pred hccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhh-hhheeeeeeeccccccccHHHHHH
Confidence 9999999999999999999999999999999999999999999999988877644 577889999999888999999998
Q ss_pred HhcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccccccc
Q psy16633 261 KLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRK 340 (540)
Q Consensus 261 ~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~ 340 (540)
+ .....+||||++..++.+...|..+++.+..+|++|.+.+|..+..+|+.|..+|||.|+
T Consensus 261 ~---~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttd---------------- 321 (397)
T KOG0327|consen 261 R---RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTD---------------- 321 (397)
T ss_pred H---hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeecc----------------
Confidence 8 356899999999999999999999999999999999999999999999999999999999
Q ss_pred cccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEEeccccccccccccchhhhhhhhhHHHHH
Q psy16633 341 RKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMND 420 (540)
Q Consensus 341 ~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 420 (540)
.++||+|+..++.|||||+|...++|+||+||+||.|.+|.++.++...+... ++.
T Consensus 322 -------l~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~-----------------lk~ 377 (397)
T KOG0327|consen 322 -------LLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRD-----------------LKD 377 (397)
T ss_pred -------ccccccchhhcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHH-----------------HHh
Confidence 89999999999999999999999999999999999999999999999888776 888
Q ss_pred HHHHHhhc
Q psy16633 421 VNEYLMTN 428 (540)
Q Consensus 421 i~~~~~~~ 428 (540)
++++++..
T Consensus 378 ie~~y~~~ 385 (397)
T KOG0327|consen 378 IEKFYNTP 385 (397)
T ss_pred HHHhcCCc
Confidence 88887665
No 33
>KOG0350|consensus
Probab=100.00 E-value=1.8e-54 Score=426.39 Aligned_cols=367 Identities=31% Similarity=0.454 Sum_probs=305.5
Q ss_pred cccccc-CCccchhcccCCc-cCCCCHH----------HHHHHHHCCCCCChHHHHHHHHHHhc---------CCcEEEE
Q psy16633 3 AKLGWL-EPTLIQVYFELPF-TFTLFCI----------PLQAIAKLGWLEPTLIQERAIPLILQ---------NKDVLVR 61 (540)
Q Consensus 3 ~~~~~~-~~~~~~~~~~~~~-~~~L~~~----------i~~~l~~~g~~~pt~~Q~~ai~~il~---------gkd~li~ 61 (540)
...||. .|..+++-+-.+| .++++.. +.+++.++++.+..|+|..++|.++. ++|+.|.
T Consensus 110 ~lp~wva~p~t~~~nslq~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ 189 (620)
T KOG0350|consen 110 ELPGWVAIPETAQNNSLQIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVN 189 (620)
T ss_pred cCcccccCceecCCCceeeeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEe
Confidence 356888 6666666665555 4444443 45569999999999999999999964 5799999
Q ss_pred cCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhh
Q psy16633 62 ARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLV 141 (540)
Q Consensus 62 a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~ 141 (540)
||||||||++|.|||+|.+.++ ..+..|+||++||++|+.|+++.+..++... ++.++.+.|..+.......+.
T Consensus 190 ApTGSGKTLaY~iPIVQ~L~~R----~v~~LRavVivPtr~L~~QV~~~f~~~~~~t--gL~V~~~sgq~sl~~E~~qL~ 263 (620)
T KOG0350|consen 190 APTGSGKTLAYVIPIVQLLSSR----PVKRLRAVVIVPTRELALQVYDTFKRLNSGT--GLAVCSLSGQNSLEDEARQLA 263 (620)
T ss_pred cCCCCCceeeehhHHHHHHccC----CccceEEEEEeeHHHHHHHHHHHHHHhccCC--ceEEEecccccchHHHHHHHh
Confidence 9999999999999999998663 2456899999999999999999999998866 777888888887766655554
Q ss_pred C-CC----CEEEEChHHHHHHHhc-CcCCccCCccEEEEcCccccccCCcHHHHHHHHHhCC------------------
Q psy16633 142 E-RP----DIVVATPARALAHLKA-KTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLP------------------ 197 (540)
Q Consensus 142 ~-~~----~Ivv~Tp~~l~~~l~~-~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~l~------------------ 197 (540)
+ .+ ||+|+|||||++|+.+ .++.+ .+++++||||||+|++..|..-+-.+...+.
T Consensus 264 ~~~~~~~~DIlVaTPGRLVDHl~~~k~f~L-k~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~ 342 (620)
T KOG0350|consen 264 SDPPECRIDILVATPGRLVDHLNNTKSFDL-KHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAP 342 (620)
T ss_pred cCCCccccceEEcCchHHHHhccCCCCcch-hhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccC
Confidence 4 34 8999999999999996 45777 9999999999999998776654444433221
Q ss_pred ----------------cccceeeEeeeccHHHHHHHHHhcCCCeEEEecC---CCCCCCCCeEEEEEEcCcccHHHHHHH
Q psy16633 198 ----------------KLYQAILASATLSEDVLSLKHLILRNPVILKLEE---PAIAPVSQLAHYHILAQEDEKATILYT 258 (540)
Q Consensus 198 ----------------~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~---~~~~~~~~l~~~~~~~~~~~k~~~l~~ 258 (540)
+..+.+++|||++.+-..+..+.++.|....... ..+..+..+.++++.+...-+...+++
T Consensus 343 ~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~ 422 (620)
T KOG0350|consen 343 QPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYA 422 (620)
T ss_pred CchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHH
Confidence 1235788999999999999999999995444332 334556678888888888889999999
Q ss_pred HHHhcccCCcEEEEecChhhHHHHHHHHH----hCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccc
Q psy16633 259 LLKLNLVQGKTIIFVNTVDKCYKLKLYLE----QFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQIN 334 (540)
Q Consensus 259 ll~~~~~~~k~IIF~~s~~~~~~l~~~L~----~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~ 334 (540)
++... .-.++|+|+++.+.+.++...|+ +.+.++..+.|++....|...++.|+.|.+++|||||
T Consensus 423 lI~~~-k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD---------- 491 (620)
T KOG0350|consen 423 LITSN-KLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSD---------- 491 (620)
T ss_pred HHHHh-hcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehh----------
Confidence 99865 35689999999999999998887 3356677799999999999999999999999999999
Q ss_pred cccccccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEEeccccccc
Q psy16633 335 STNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDL 400 (540)
Q Consensus 335 ~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e~~~ 400 (540)
+++||||+.+|++|||||+|.+..+|+||+|||||+|+.|.|+++....+...
T Consensus 492 -------------~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~r~ 544 (620)
T KOG0350|consen 492 -------------ALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDKHEKRL 544 (620)
T ss_pred -------------hhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeeccccchH
Confidence 99999999999999999999999999999999999999999999999888765
No 34
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=2.9e-52 Score=459.18 Aligned_cols=336 Identities=19% Similarity=0.212 Sum_probs=268.2
Q ss_pred CccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcC
Q psy16633 20 PFTFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSP 99 (540)
Q Consensus 20 ~~~~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~P 99 (540)
|++..|++.+.++|.++||.+||++|++|||.+++|+|+++.+|||||||+||++|+++.+.+ ..+.++||++|
T Consensus 16 ~~~~~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~------~~~~~aL~l~P 89 (742)
T TIGR03817 16 PWPAWAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALAD------DPRATALYLAP 89 (742)
T ss_pred CCCCcCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhh------CCCcEEEEEcC
Confidence 444568999999999999999999999999999999999999999999999999999999865 34679999999
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCc---CCccCCccEEEEcC
Q psy16633 100 SKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKT---LDLKSSLEIVIIDE 176 (540)
Q Consensus 100 t~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~---~~~~~~l~~lViDE 176 (540)
|+||+.|+.+.++.++ . .++++..+.|+... .++..+..+++|+|+||+++...+.... ..+++++++|||||
T Consensus 90 traLa~q~~~~l~~l~-~--~~i~v~~~~Gdt~~-~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDE 165 (742)
T TIGR03817 90 TKALAADQLRAVRELT-L--RGVRPATYDGDTPT-EERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDE 165 (742)
T ss_pred hHHHHHHHHHHHHHhc-c--CCeEEEEEeCCCCH-HHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeC
Confidence 9999999999999986 2 25777777777654 3445566789999999999865332211 11238999999999
Q ss_pred ccccccCCcHHHHHHHHHh-------CCcccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcC-
Q psy16633 177 ADLVFSFGYEDDMKAVLKF-------LPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQ- 248 (540)
Q Consensus 177 ah~l~~~~~~~~l~~i~~~-------l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~- 248 (540)
||.+.+ .|+..+..++.. .+...|++++|||+++..+. ...++..|..+ +.....+ .......++...
T Consensus 166 ah~~~g-~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~~-~~~l~g~~~~~-i~~~~~~-~~~~~~~~~~p~~ 241 (742)
T TIGR03817 166 CHSYRG-VFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAAA-ASRLIGAPVVA-VTEDGSP-RGARTVALWEPPL 241 (742)
T ss_pred hhhccC-ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHHH-HHHHcCCCeEE-ECCCCCC-cCceEEEEecCCc
Confidence 999876 466665554443 45568999999999988664 55566667544 3322211 111222221111
Q ss_pred ---------------cccHHHHHHHHHHhcccCCcEEEEecChhhHHHHHHHHHhC--------CCceEEeCCCCCHHHH
Q psy16633 249 ---------------EDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQF--------KISTCVLNSELPAKAR 305 (540)
Q Consensus 249 ---------------~~~k~~~l~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~--------~~~~~~l~~~l~~~~r 305 (540)
..++..++..+++. ..++||||+|+..|+.++..|.+. +.++..+||++++++|
T Consensus 242 ~~~~~~~~~~~r~~~~~~~~~~l~~l~~~---~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR 318 (742)
T TIGR03817 242 TELTGENGAPVRRSASAEAADLLADLVAE---GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDR 318 (742)
T ss_pred cccccccccccccchHHHHHHHHHHHHHC---CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHH
Confidence 12345556666553 569999999999999999988763 5678899999999999
Q ss_pred HHHHHHHhcCCccEEEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCC
Q psy16633 306 CHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKN 385 (540)
Q Consensus 306 ~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~ 385 (540)
..++++|++|++++||||| ++++|||++++++|||||+|.+..+|+||+|||||+|+
T Consensus 319 ~~ie~~f~~G~i~vLVaTd-----------------------~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~ 375 (742)
T TIGR03817 319 RELERALRDGELLGVATTN-----------------------ALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQ 375 (742)
T ss_pred HHHHHHHHcCCceEEEECc-----------------------hHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCC
Confidence 9999999999999999999 99999999999999999999999999999999999999
Q ss_pred CceEEEEecc
Q psy16633 386 QGTALSFVSL 395 (540)
Q Consensus 386 ~g~~i~~~~~ 395 (540)
.|.+++++..
T Consensus 376 ~g~ai~v~~~ 385 (742)
T TIGR03817 376 GALVVLVARD 385 (742)
T ss_pred CcEEEEEeCC
Confidence 9999999863
No 35
>KOG0344|consensus
Probab=100.00 E-value=3.8e-53 Score=426.89 Aligned_cols=384 Identities=29% Similarity=0.414 Sum_probs=326.7
Q ss_pred cccccccCCccchhcccCCccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHH
Q psy16633 2 IAKLGWLEPTLIQVYFELPFTFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII 81 (540)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~ 81 (540)
+.+.|-..|.++..|+....++..++++++.+..+||..|||+|.+|||..+.++|+++|||||||||++|.+|++++|.
T Consensus 120 ~~v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~ 199 (593)
T KOG0344|consen 120 INVDGFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLK 199 (593)
T ss_pred eeccCCCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHH
Confidence 34567778999999999888999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcc-cccchhhhhCCCCEEEEChHHHHHHHhc
Q psy16633 82 NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVD-VSVQEPLLVERPDIVVATPARALAHLKA 160 (540)
Q Consensus 82 ~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~-~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~ 160 (540)
.........|.+++|+.||++|+.|++..+..+...-+.......+..... ...........++|+++||-++..++..
T Consensus 200 ~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~ 279 (593)
T KOG0344|consen 200 DLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGL 279 (593)
T ss_pred HhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcC
Confidence 754333357899999999999999999999998843322344333333221 1222233345789999999999999988
Q ss_pred Cc--CCccCCccEEEEcCccccccC-CcHHHHHHHHHhCC-cccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCC
Q psy16633 161 KT--LDLKSSLEIVIIDEADLVFSF-GYEDDMKAVLKFLP-KLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAP 236 (540)
Q Consensus 161 ~~--~~~~~~l~~lViDEah~l~~~-~~~~~l~~i~~~l~-~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~ 236 (540)
+. +.+ +.+.++|+||||+++.. +|...+..|++.+. +...+-+||||.+..++++......++..+.+......
T Consensus 280 ~~~~idl-~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa- 357 (593)
T KOG0344|consen 280 GKLNIDL-SKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSA- 357 (593)
T ss_pred CCccchh-heeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhH-
Confidence 76 566 89999999999999999 88889888888765 45677899999999999999999999987777654332
Q ss_pred CCCeEEEEEEc-CcccHHHHHHHHHHhcccCCcEEEEecChhhHHHHHHHH-HhCCCceEEeCCCCCHHHHHHHHHHHhc
Q psy16633 237 VSQLAHYHILA-QEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYL-EQFKISTCVLNSELPAKARCHAVYQFNQ 314 (540)
Q Consensus 237 ~~~l~~~~~~~-~~~~k~~~l~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L-~~~~~~~~~l~~~l~~~~r~~i~~~F~~ 314 (540)
...+.|..+.| ++..|+..+..++... ...+++||+.+.++|..|...| .--++.+.++||+.++.+|..++++|+.
T Consensus 358 ~~~V~QelvF~gse~~K~lA~rq~v~~g-~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~ 436 (593)
T KOG0344|consen 358 NETVDQELVFCGSEKGKLLALRQLVASG-FKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRI 436 (593)
T ss_pred hhhhhhhheeeecchhHHHHHHHHHhcc-CCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhc
Confidence 34455555554 5788999999999866 5669999999999999999999 4558999999999999999999999999
Q ss_pred CCccEEEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEEec
Q psy16633 315 GLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVS 394 (540)
Q Consensus 315 g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~ 394 (540)
|++++||||+ .++||+||.+|++|||||+|.+..+|+||+||+||+|+.|.|++|++
T Consensus 437 g~IwvLicTd-----------------------ll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfyt 493 (593)
T KOG0344|consen 437 GKIWVLICTD-----------------------LLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYT 493 (593)
T ss_pred cCeeEEEehh-----------------------hhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEec
Confidence 9999999999 99999999999999999999999999999999999999999999999
Q ss_pred cccccccccccchhhhhhhhhHHHHHHHHHHhhc
Q psy16633 395 LREQDLMNDGTALSFVSLREQDLMNDVNEYLMTN 428 (540)
Q Consensus 395 ~~e~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 428 (540)
..+... ++.|.+.+...
T Consensus 494 d~d~~~-----------------ir~iae~~~~s 510 (593)
T KOG0344|consen 494 DQDMPR-----------------IRSIAEVMEQS 510 (593)
T ss_pred cccchh-----------------hhhHHHHHHHc
Confidence 988777 77777666554
No 36
>KOG4284|consensus
Probab=100.00 E-value=3e-52 Score=420.39 Aligned_cols=351 Identities=21% Similarity=0.383 Sum_probs=312.9
Q ss_pred CccchhcccCCccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccC
Q psy16633 10 PTLIQVYFELPFTFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89 (540)
Q Consensus 10 ~~~~~~~~~~~~~~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~ 89 (540)
|.....|++ +-|-..++..|...||..||++|..|||.++.+-|+||+|..|+|||++|.+.+++.+-. ..
T Consensus 21 ~~~~~~fe~----l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~-----~~ 91 (980)
T KOG4284|consen 21 SNCTPGFEQ----LALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDS-----RS 91 (980)
T ss_pred cCCCCCHHH----HHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCc-----cc
Confidence 344444554 557889999999999999999999999999999999999999999999999999988743 35
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCc
Q psy16633 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSL 169 (540)
Q Consensus 90 ~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l 169 (540)
.....+|++||||+|.|+.+.+..++..+ .+.+|....||.........+ ..++|+|+|||++..++..+.++. +++
T Consensus 92 ~~~q~~Iv~PTREiaVQI~~tv~~v~~sf-~g~~csvfIGGT~~~~d~~rl-k~~rIvIGtPGRi~qL~el~~~n~-s~v 168 (980)
T KOG4284|consen 92 SHIQKVIVTPTREIAVQIKETVRKVAPSF-TGARCSVFIGGTAHKLDLIRL-KQTRIVIGTPGRIAQLVELGAMNM-SHV 168 (980)
T ss_pred CcceeEEEecchhhhhHHHHHHHHhcccc-cCcceEEEecCchhhhhhhhh-hhceEEecCchHHHHHHHhcCCCc-cce
Confidence 67899999999999999999999998766 478899999998877655554 578899999999999999999998 999
Q ss_pred cEEEEcCcccccc-CCcHHHHHHHHHhCCcccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcC
Q psy16633 170 EIVIIDEADLVFS-FGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQ 248 (540)
Q Consensus 170 ~~lViDEah~l~~-~~~~~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~ 248 (540)
+++|+||||.+++ ..|.+++..|...+|..+|++.+|||.|..+..+...++++|..+.+.... +..-.++||++...
T Consensus 169 rlfVLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d-~~L~GikQyv~~~~ 247 (980)
T KOG4284|consen 169 RLFVLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADD-VQLFGIKQYVVAKC 247 (980)
T ss_pred eEEEeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCC-ceeechhheeeecc
Confidence 9999999999998 569999999999999999999999999999999999999999999998776 34456788876654
Q ss_pred c--------ccHHHHHHHHHHhcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEE
Q psy16633 249 E--------DEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVI 320 (540)
Q Consensus 249 ~--------~~k~~~l~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iL 320 (540)
. ..|...|-.+++. .+-.+.||||+....|+.++..|...|+.|..+.|.|.+++|.+++..++.-.++||
T Consensus 248 s~nnsveemrlklq~L~~vf~~-ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rIL 326 (980)
T KOG4284|consen 248 SPNNSVEEMRLKLQKLTHVFKS-IPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRIL 326 (980)
T ss_pred CCcchHHHHHHHHHHHHHHHhh-CchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEE
Confidence 2 2356666676663 345689999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEEecccc
Q psy16633 321 IASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLRE 397 (540)
Q Consensus 321 IaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e 397 (540)
|+|| ..+||||-++|++|||.|.|.+..+|.||+|||||.|..|.+++|+...+
T Consensus 327 VsTD-----------------------LtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~ 380 (980)
T KOG4284|consen 327 VSTD-----------------------LTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDER 380 (980)
T ss_pred Eecc-----------------------hhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccch
Confidence 9999 89999999999999999999999999999999999999999999997544
No 37
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=8.1e-50 Score=436.83 Aligned_cols=331 Identities=20% Similarity=0.251 Sum_probs=258.2
Q ss_pred cCCCCHHHHHHHHH-CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCc
Q psy16633 22 TFTLFCIPLQAIAK-LGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPS 100 (540)
Q Consensus 22 ~~~L~~~i~~~l~~-~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt 100 (540)
.|+++..+...+++ +||..++|+|.++|+.++.|+|+++.+|||+|||+||++|++.. +..+|||+|+
T Consensus 441 ~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~-----------~GiTLVISPL 509 (1195)
T PLN03137 441 NFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC-----------PGITLVISPL 509 (1195)
T ss_pred CCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc-----------CCcEEEEeCH
Confidence 46777788777776 69999999999999999999999999999999999999999842 4579999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhh------CCCCEEEEChHHHHH--HHhcC--cCCccCCcc
Q psy16633 101 KELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLV------ERPDIVVATPARALA--HLKAK--TLDLKSSLE 170 (540)
Q Consensus 101 ~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~------~~~~Ivv~Tp~~l~~--~l~~~--~~~~~~~l~ 170 (540)
++|+.++...+... ++....+.++.....+...+. +.++|+|+||+++.. .+.+. .+.....++
T Consensus 510 iSLmqDQV~~L~~~------GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~Ls 583 (1195)
T PLN03137 510 VSLIQDQIMNLLQA------NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLA 583 (1195)
T ss_pred HHHHHHHHHHHHhC------CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccc
Confidence 99998665555443 567777777776555543332 568999999999752 12111 111124589
Q ss_pred EEEEcCccccccCC--cHHHHHHH---HHhCCcccceeeEeeeccHHHHHHHHHh--cCCCeEEEecCCCCCCCCCeEEE
Q psy16633 171 IVIIDEADLVFSFG--YEDDMKAV---LKFLPKLYQAILASATLSEDVLSLKHLI--LRNPVILKLEEPAIAPVSQLAHY 243 (540)
Q Consensus 171 ~lViDEah~l~~~~--~~~~l~~i---~~~l~~~~q~il~SATl~~~~~~~~~~~--l~~p~~i~~~~~~~~~~~~l~~~ 243 (540)
+|||||||++++|| |+.++..+ ...+| ..+++++|||++..+....... +.++.++.-.- . . .++ +
T Consensus 584 lIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp-~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf-~-R--pNL--~ 656 (1195)
T PLN03137 584 RFVIDEAHCVSQWGHDFRPDYQGLGILKQKFP-NIPVLALTATATASVKEDVVQALGLVNCVVFRQSF-N-R--PNL--W 656 (1195)
T ss_pred eeccCcchhhhhcccchHHHHHHHHHHHHhCC-CCCeEEEEecCCHHHHHHHHHHcCCCCcEEeeccc-C-c--cce--E
Confidence 99999999999998 66766653 33344 5789999999999887644433 34444433211 1 1 122 2
Q ss_pred EEEcCccc-HHHHHHHHHHhcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEe
Q psy16633 244 HILAQEDE-KATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIA 322 (540)
Q Consensus 244 ~~~~~~~~-k~~~l~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIa 322 (540)
|....... ....+..+++.......+||||+++..|+.++..|...|+.+..+||+|++.+|..+++.|..|.++||||
T Consensus 657 y~Vv~k~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVA 736 (1195)
T PLN03137 657 YSVVPKTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICA 736 (1195)
T ss_pred EEEeccchhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEE
Confidence 22222222 23345555554444568999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccCCcccccccccccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEEecccccc
Q psy16633 323 SDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQD 399 (540)
Q Consensus 323 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e~~ 399 (540)
|+ +++||||+|+|++|||||+|.|+++|+||+|||||.|..|.|++|+...|..
T Consensus 737 Td-----------------------AFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~ 790 (1195)
T PLN03137 737 TV-----------------------AFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYI 790 (1195)
T ss_pred ec-----------------------hhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHH
Confidence 99 9999999999999999999999999999999999999999999999876653
No 38
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3.1e-49 Score=418.50 Aligned_cols=320 Identities=20% Similarity=0.283 Sum_probs=248.7
Q ss_pred HCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHH
Q psy16633 35 KLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQEL 114 (540)
Q Consensus 35 ~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l 114 (540)
.+||..|||+|+++|+.+++|+|+++.+|||||||++|++|++. .+..+||++||++|+.|+.+.+..+
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~-----------~~~~~lVi~P~~~L~~dq~~~l~~~ 74 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALC-----------SDGITLVISPLISLMEDQVLQLKAS 74 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHH-----------cCCcEEEEecHHHHHHHHHHHHHHc
Confidence 47999999999999999999999999999999999999999874 2457899999999999998888764
Q ss_pred HhhcCCCceEEEeecCcccccch----hhhhCCCCEEEEChHHHHHHHh-cCcCCccCCccEEEEcCccccccCC--cHH
Q psy16633 115 TMKCSRDVKCVDISEQVDVSVQE----PLLVERPDIVVATPARALAHLK-AKTLDLKSSLEIVIIDEADLVFSFG--YED 187 (540)
Q Consensus 115 ~~~~~~~i~~~~~~~~~~~~~~~----~~l~~~~~Ivv~Tp~~l~~~l~-~~~~~~~~~l~~lViDEah~l~~~~--~~~ 187 (540)
++....+.++.....+. ....+.++|+++||+++..... ...+.....+++|||||||++.+|| |..
T Consensus 75 ------gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~ 148 (470)
T TIGR00614 75 ------GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRP 148 (470)
T ss_pred ------CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHH
Confidence 35556666665443222 2234568999999999754221 1111012789999999999999987 555
Q ss_pred HHHHH---HHhCCcccceeeEeeeccHHHHHHHHH--hcCCCeEEEecCCCCCCCCCeEEEEEEcCcccHHHHHHHHHHh
Q psy16633 188 DMKAV---LKFLPKLYQAILASATLSEDVLSLKHL--ILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKL 262 (540)
Q Consensus 188 ~l~~i---~~~l~~~~q~il~SATl~~~~~~~~~~--~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~ll~~ 262 (540)
++..+ ...+| ..+++++|||+++.+...... .+.+|.++...-.. .++ .+.+..........+..++..
T Consensus 149 ~~~~l~~l~~~~~-~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r----~nl-~~~v~~~~~~~~~~l~~~l~~ 222 (470)
T TIGR00614 149 DYKALGSLKQKFP-NVPIMALTATASPSVREDILRQLNLKNPQIFCTSFDR----PNL-YYEVRRKTPKILEDLLRFIRK 222 (470)
T ss_pred HHHHHHHHHHHcC-CCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCC----CCc-EEEEEeCCccHHHHHHHHHHH
Confidence 55443 44444 578999999999987654433 34566554432111 112 222222222334444444443
Q ss_pred cccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccccccccc
Q psy16633 263 NLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRK 342 (540)
Q Consensus 263 ~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~ 342 (540)
...+..+||||++++.|+.++..|.+.|+.+..+||+|++.+|..+++.|.+|.++|||||+
T Consensus 223 ~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~------------------ 284 (470)
T TIGR00614 223 EFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATV------------------ 284 (470)
T ss_pred hcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEec------------------
Confidence 33445669999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEEeccccccc
Q psy16633 343 RDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDL 400 (540)
Q Consensus 343 ~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e~~~ 400 (540)
++++|||+|+|++|||||+|.|.++|+||+|||||.|.+|.|++|+.+.+...
T Consensus 285 -----~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~ 337 (470)
T TIGR00614 285 -----AFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYAPADINR 337 (470)
T ss_pred -----hhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEechhHHHH
Confidence 99999999999999999999999999999999999999999999999887654
No 39
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=5.9e-47 Score=411.37 Aligned_cols=329 Identities=19% Similarity=0.244 Sum_probs=253.7
Q ss_pred CCCCHHHHHHHHH-CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcH
Q psy16633 23 FTLFCIPLQAIAK-LGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSK 101 (540)
Q Consensus 23 ~~L~~~i~~~l~~-~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~ 101 (540)
+.++....+.|++ +||..|+|+|+++|+.+++|+|+++.+|||+|||++|++|++.. ...+||++|++
T Consensus 7 ~~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~-----------~g~tlVisPl~ 75 (607)
T PRK11057 7 LNLESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL-----------DGLTLVVSPLI 75 (607)
T ss_pred CCchhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc-----------CCCEEEEecHH
Confidence 3445556666666 69999999999999999999999999999999999999998842 34689999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCceEEEeecCcccccch----hhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCc
Q psy16633 102 ELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQE----PLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEA 177 (540)
Q Consensus 102 ~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~----~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEa 177 (540)
+|+.|+.+.+..+ ++....+.+........ ....+..+++++||+++........+.. .++++||||||
T Consensus 76 sL~~dqv~~l~~~------gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~-~~l~~iVIDEa 148 (607)
T PRK11057 76 SLMKDQVDQLLAN------GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAH-WNPALLAVDEA 148 (607)
T ss_pred HHHHHHHHHHHHc------CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhh-CCCCEEEEeCc
Confidence 9999999888765 34445555544333222 1223567899999999874322222222 57899999999
Q ss_pred cccccCC--cHHHHH---HHHHhCCcccceeeEeeeccHHHHHHHH--HhcCCCeEEEecCCCCCCCCCeEEEEEEcCcc
Q psy16633 178 DLVFSFG--YEDDMK---AVLKFLPKLYQAILASATLSEDVLSLKH--LILRNPVILKLEEPAIAPVSQLAHYHILAQED 250 (540)
Q Consensus 178 h~l~~~~--~~~~l~---~i~~~l~~~~q~il~SATl~~~~~~~~~--~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~~ 250 (540)
|++.+|| |..++. .+...+| ..+++++|||+++.+..... ..+.+|.+.... ... .++ .+......
T Consensus 149 H~i~~~G~~fr~~y~~L~~l~~~~p-~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~-~~r---~nl--~~~v~~~~ 221 (607)
T PRK11057 149 HCISQWGHDFRPEYAALGQLRQRFP-TLPFMALTATADDTTRQDIVRLLGLNDPLIQISS-FDR---PNI--RYTLVEKF 221 (607)
T ss_pred cccccccCcccHHHHHHHHHHHhCC-CCcEEEEecCCChhHHHHHHHHhCCCCeEEEECC-CCC---Ccc--eeeeeecc
Confidence 9999987 454444 3344444 57899999999988765332 235566544321 111 112 22222333
Q ss_pred cHHHHHHHHHHhcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCC
Q psy16633 251 EKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALET 330 (540)
Q Consensus 251 ~k~~~l~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~ 330 (540)
.+...+..++.. ...+++||||++++.|+.++..|.+.|+.+..+||+|++.+|..+++.|..|.++|||||+
T Consensus 222 ~~~~~l~~~l~~-~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~------ 294 (607)
T PRK11057 222 KPLDQLMRYVQE-QRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATV------ 294 (607)
T ss_pred chHHHHHHHHHh-cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEec------
Confidence 344444444443 2456899999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEEeccccccc
Q psy16633 331 PQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDL 400 (540)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e~~~ 400 (540)
++++|||+|+|++|||||+|.|.++|+||+|||||.|.+|.|++|+++.+...
T Consensus 295 -----------------a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~ 347 (607)
T PRK11057 295 -----------------AFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAW 347 (607)
T ss_pred -----------------hhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHH
Confidence 99999999999999999999999999999999999999999999999887644
No 40
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=2.9e-46 Score=406.95 Aligned_cols=320 Identities=22% Similarity=0.301 Sum_probs=254.1
Q ss_pred HHHH-CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHH
Q psy16633 32 AIAK-LGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKN 110 (540)
Q Consensus 32 ~l~~-~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~ 110 (540)
.|++ +||.+++++|.++|+.+++|+|+++.+|||+|||++|++|++. .+..++|++|+++|+.|+.+.
T Consensus 4 ~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~-----------~~g~~lVisPl~sL~~dq~~~ 72 (591)
T TIGR01389 4 VLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALL-----------LKGLTVVISPLISLMKDQVDQ 72 (591)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHH-----------cCCcEEEEcCCHHHHHHHHHH
Confidence 4544 7999999999999999999999999999999999999999873 245689999999999999988
Q ss_pred HHHHHhhcCCCceEEEeecCcccccchh----hhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCC--
Q psy16633 111 IQELTMKCSRDVKCVDISEQVDVSVQEP----LLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFG-- 184 (540)
Q Consensus 111 l~~l~~~~~~~i~~~~~~~~~~~~~~~~----~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~-- 184 (540)
++.+ ++.+..+.++........ ...+..+|+++||+++........+.. .++++|||||||++.+||
T Consensus 73 l~~~------gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~-~~l~~iViDEaH~i~~~g~~ 145 (591)
T TIGR01389 73 LRAA------GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQR-IPIALVAVDEAHCVSQWGHD 145 (591)
T ss_pred HHHc------CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhc-CCCCEEEEeCCcccccccCc
Confidence 8875 355566666655443322 334678999999999865433333333 689999999999999987
Q ss_pred cHHHHHHH---HHhCCcccceeeEeeeccHHHHHHHHHhc--CCCeEEEecCCCCCCCCCeEEEEEEcCcccHHHHHHHH
Q psy16633 185 YEDDMKAV---LKFLPKLYQAILASATLSEDVLSLKHLIL--RNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTL 259 (540)
Q Consensus 185 ~~~~l~~i---~~~l~~~~q~il~SATl~~~~~~~~~~~l--~~p~~i~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~l 259 (540)
|+.++..+ ...+|. .+++++|||.++.+.......+ .++..+... .. ..++ ++......++...+..+
T Consensus 146 frp~y~~l~~l~~~~~~-~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~-~~---r~nl--~~~v~~~~~~~~~l~~~ 218 (591)
T TIGR01389 146 FRPEYQRLGSLAERFPQ-VPRIALTATADAETRQDIRELLRLADANEFITS-FD---RPNL--RFSVVKKNNKQKFLLDY 218 (591)
T ss_pred cHHHHHHHHHHHHhCCC-CCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecC-CC---CCCc--EEEEEeCCCHHHHHHHH
Confidence 56555544 444554 4599999999998876555444 344433211 11 1112 22333344556666666
Q ss_pred HHhcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCccccccccc
Q psy16633 260 LKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNR 339 (540)
Q Consensus 260 l~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~ 339 (540)
+... .+.++||||+++..|+.++..|...|+++..+||+|+..+|..+++.|.+|.++|||||+
T Consensus 219 l~~~-~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~--------------- 282 (591)
T TIGR01389 219 LKKH-RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATN--------------- 282 (591)
T ss_pred HHhc-CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEec---------------
Confidence 6543 357899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEEeccccccc
Q psy16633 340 KRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDL 400 (540)
Q Consensus 340 ~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e~~~ 400 (540)
++++|||+|+|++||+||+|.|.++|+||+|||||.|..|.|++++++.+...
T Consensus 283 --------a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~ 335 (591)
T TIGR01389 283 --------AFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSPADIAL 335 (591)
T ss_pred --------hhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEEecCHHHHHH
Confidence 99999999999999999999999999999999999999999999998877544
No 41
>KOG0329|consensus
Probab=100.00 E-value=3.2e-48 Score=352.20 Aligned_cols=310 Identities=30% Similarity=0.479 Sum_probs=280.4
Q ss_pred cCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcH
Q psy16633 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSK 101 (540)
Q Consensus 22 ~~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~ 101 (540)
+|-|.|++++|+-+.||.+|+.+|.+|||.+.-|-|++++|..|.|||++|++..+|.+- +......+|++|.||
T Consensus 46 dfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqie-----pv~g~vsvlvmchtr 120 (387)
T KOG0329|consen 46 DFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIE-----PVDGQVSVLVMCHTR 120 (387)
T ss_pred hhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcC-----CCCCeEEEEEEeccH
Confidence 788999999999999999999999999999999999999999999999999999999872 224467899999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccc
Q psy16633 102 ELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVF 181 (540)
Q Consensus 102 ~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~ 181 (540)
|||.|+......+..++ +++.+....||..++.....+.+.|+|+|+|||+++.+.+++.+++ ++++.+|+||||.|+
T Consensus 121 elafqi~~ey~rfskym-P~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~l-k~vkhFvlDEcdkml 198 (387)
T KOG0329|consen 121 ELAFQISKEYERFSKYM-PSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNL-KNVKHFVLDECDKML 198 (387)
T ss_pred HHHHHHHHHHHHHHhhC-CCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCch-hhcceeehhhHHHHH
Confidence 99999999999998887 5899999999999999999999999999999999999999999998 999999999999887
Q ss_pred cC-CcHHHHHHHHHhCCcccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcCcccHHHHHHHHH
Q psy16633 182 SF-GYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLL 260 (540)
Q Consensus 182 ~~-~~~~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~ll 260 (540)
.+ ..+.+++.|.+..|...|++++|||++++++...+.++.+|..+.++.+..-....+.|||+...+.+|...+..++
T Consensus 199 e~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~dLL 278 (387)
T KOG0329|consen 199 EQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLNDLL 278 (387)
T ss_pred HHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhhhhhhhh
Confidence 65 57789999999999999999999999999999999999999999988877666778999999999999888888887
Q ss_pred HhcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccccccc
Q psy16633 261 KLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRK 340 (540)
Q Consensus 261 ~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~ 340 (540)
... .-.+++||+.++.+ | .|. .+ +|||+
T Consensus 279 d~L-eFNQVvIFvKsv~R-------l------------------------~f~---kr-~vat~---------------- 306 (387)
T KOG0329|consen 279 DVL-EFNQVVIFVKSVQR-------L------------------------SFQ---KR-LVATD---------------- 306 (387)
T ss_pred hhh-hhcceeEeeehhhh-------h------------------------hhh---hh-hHHhh----------------
Confidence 743 45689999999875 0 031 22 89999
Q ss_pred cccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEEecccc
Q psy16633 341 RKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLRE 397 (540)
Q Consensus 341 ~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e 397 (540)
.++||+|+..|+.|||||+|.+.++|.||+|||||.|.+|.+|+|++..+
T Consensus 307 -------lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~ 356 (387)
T KOG0329|consen 307 -------LFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 356 (387)
T ss_pred -------hhccccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchh
Confidence 99999999999999999999999999999999999999999999998543
No 42
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=9.1e-46 Score=415.47 Aligned_cols=339 Identities=20% Similarity=0.255 Sum_probs=250.7
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccc-cCCCeEEEEEcCcHHH
Q psy16633 25 LFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTA-QVQETKALVLSPSKEL 103 (540)
Q Consensus 25 L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~-~~~~~~vlil~Pt~~L 103 (540)
|++.+.+.+.+ +|..|||+|++|||.+++|+|++++||||||||++|++|+++.++...... ...+.++||++||++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 67777777666 799999999999999999999999999999999999999999987632211 1357889999999999
Q ss_pred HHHHHHHHHHH-------HhhcCC---CceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcC-CccCCccEE
Q psy16633 104 CNQLHKNIQEL-------TMKCSR---DVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTL-DLKSSLEIV 172 (540)
Q Consensus 104 a~q~~~~l~~l-------~~~~~~---~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~-~~~~~l~~l 172 (540)
+.|+++.+... +...+. .+.+...+|+.....+...+...++|+|+||+++..++.+... ..+.++++|
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~V 176 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWV 176 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEE
Confidence 99999876632 211121 5678888898877777667777899999999999887765432 133889999
Q ss_pred EEcCccccccCCcHHHHHHH----HHhCCcccceeeEeeeccHHHHHHHHHhc-------CCCeEEEecCCCCCCCCCeE
Q psy16633 173 IIDEADLVFSFGYEDDMKAV----LKFLPKLYQAILASATLSEDVLSLKHLIL-------RNPVILKLEEPAIAPVSQLA 241 (540)
Q Consensus 173 ViDEah~l~~~~~~~~l~~i----~~~l~~~~q~il~SATl~~~~~~~~~~~l-------~~p~~i~~~~~~~~~~~~l~ 241 (540)
||||+|.+.+..++..+... ....+...|.+++|||+++.. .+..... ..+..+. . ........+.
T Consensus 177 VIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~~-~va~~L~~~~~~~~~r~~~iv-~-~~~~k~~~i~ 253 (876)
T PRK13767 177 IVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPLE-EVAKFLVGYEDDGEPRDCEIV-D-ARFVKPFDIK 253 (876)
T ss_pred EEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCHH-HHHHHhcCccccCCCCceEEE-c-cCCCccceEE
Confidence 99999999987766554444 333445789999999998632 2222111 1122221 1 1100000011
Q ss_pred EE-----EEEcCcccH----HHHHHHHHHhcccCCcEEEEecChhhHHHHHHHHHhC------CCceEEeCCCCCHHHHH
Q psy16633 242 HY-----HILAQEDEK----ATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQF------KISTCVLNSELPAKARC 306 (540)
Q Consensus 242 ~~-----~~~~~~~~k----~~~l~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~------~~~~~~l~~~l~~~~r~ 306 (540)
.. ......... ...+..+++ ..+++||||||+..|+.++..|.+. +..+..+||+|++++|.
T Consensus 254 v~~p~~~l~~~~~~~~~~~l~~~L~~~i~---~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~ 330 (876)
T PRK13767 254 VISPVDDLIHTPAEEISEALYETLHELIK---EHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRL 330 (876)
T ss_pred EeccCccccccccchhHHHHHHHHHHHHh---cCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHH
Confidence 00 000111111 222333322 3568999999999999999999862 46799999999999999
Q ss_pred HHHHHHhcCCccEEEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCC-
Q psy16633 307 HAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKN- 385 (540)
Q Consensus 307 ~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~- 385 (540)
.+++.|++|.+++||||+ ++++|||+|++++||+||.|.|..+|+||+||+||.+.
T Consensus 331 ~ve~~fk~G~i~vLVaTs-----------------------~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~ 387 (876)
T PRK13767 331 EVEEKLKRGELKVVVSST-----------------------SLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGE 387 (876)
T ss_pred HHHHHHHcCCCeEEEECC-----------------------hHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCC
Confidence 999999999999999999 99999999999999999999999999999999998743
Q ss_pred CceEEEEe
Q psy16633 386 QGTALSFV 393 (540)
Q Consensus 386 ~g~~i~~~ 393 (540)
.+.++++.
T Consensus 388 ~~~g~ii~ 395 (876)
T PRK13767 388 VSKGRIIV 395 (876)
T ss_pred CCcEEEEE
Confidence 34444444
No 43
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=1.1e-45 Score=411.14 Aligned_cols=332 Identities=20% Similarity=0.227 Sum_probs=255.3
Q ss_pred cCCCCHHHHHHHHHCCCCCChHHHHHHHHH-HhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCc
Q psy16633 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPL-ILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPS 100 (540)
Q Consensus 22 ~~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~-il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt 100 (540)
+++|++.+++++.+.||.+|+|+|.+|++. ++.|+|++++||||||||++|.+|+++.+. .+.++||++|+
T Consensus 5 ~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~--------~~~kal~i~P~ 76 (737)
T PRK02362 5 ELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIA--------RGGKALYIVPL 76 (737)
T ss_pred hcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHh--------cCCcEEEEeCh
Confidence 678999999999999999999999999998 778999999999999999999999999883 46789999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCcccc
Q psy16633 101 KELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLV 180 (540)
Q Consensus 101 ~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l 180 (540)
++||.|+++.++.+.. . ++++..++|+...... ....++|+|+||+++..++++....+ .+++++|+||+|++
T Consensus 77 raLa~q~~~~~~~~~~-~--g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l-~~v~lvViDE~H~l 149 (737)
T PRK02362 77 RALASEKFEEFERFEE-L--GVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWL-DDITCVVVDEVHLI 149 (737)
T ss_pred HHHHHHHHHHHHHhhc-C--CCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhh-hhcCEEEEECcccc
Confidence 9999999999997642 2 5778888887654332 22568999999999988887654444 88999999999999
Q ss_pred ccCCcHHHHHHHHHhC---CcccceeeEeeeccHH--HHHHHHHhc----CCCeEEEec---CCCCCCCCCeEEEEEEcC
Q psy16633 181 FSFGYEDDMKAVLKFL---PKLYQAILASATLSED--VLSLKHLIL----RNPVILKLE---EPAIAPVSQLAHYHILAQ 248 (540)
Q Consensus 181 ~~~~~~~~l~~i~~~l---~~~~q~il~SATl~~~--~~~~~~~~l----~~p~~i~~~---~~~~~~~~~l~~~~~~~~ 248 (540)
.+.+++..++.++..+ +...|++++|||+++. +..+..... ..|+.+... ........ .+..+...
T Consensus 150 ~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~--~~~~~~~~ 227 (737)
T PRK02362 150 DSANRGPTLEVTLAKLRRLNPDLQVVALSATIGNADELADWLDAELVDSEWRPIDLREGVFYGGAIHFDD--SQREVEVP 227 (737)
T ss_pred CCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCHHHHHHHhCCCcccCCCCCCCCeeeEecCCeecccc--ccccCCCc
Confidence 9888888887776554 4678999999999863 222221110 012111110 00000000 01111111
Q ss_pred c-ccHHHHHHHHHHhcccCCcEEEEecChhhHHHHHHHHHhC------------------------------------CC
Q psy16633 249 E-DEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQF------------------------------------KI 291 (540)
Q Consensus 249 ~-~~k~~~l~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~------------------------------------~~ 291 (540)
. ......+...+ ..++++||||+++..|+.++..|.+. ..
T Consensus 228 ~~~~~~~~~~~~~---~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~ 304 (737)
T PRK02362 228 SKDDTLNLVLDTL---EEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAK 304 (737)
T ss_pred cchHHHHHHHHHH---HcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHh
Confidence 1 12222333332 25679999999999999988877543 13
Q ss_pred ceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEe----CC--
Q psy16633 292 STCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVIN----FD-- 365 (540)
Q Consensus 292 ~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~----~d-- 365 (540)
+++.+|++|++.+|..+++.|++|.++|||||+ ++++|+|+|++++||+ ||
T Consensus 305 gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~-----------------------tla~GvnlPa~~VVI~~~~~yd~~ 361 (737)
T PRK02362 305 GAAFHHAGLSREHRELVEDAFRDRLIKVISSTP-----------------------TLAAGLNLPARRVIIRDYRRYDGG 361 (737)
T ss_pred CEEeecCCCCHHHHHHHHHHHHcCCCeEEEech-----------------------hhhhhcCCCceEEEEecceeecCC
Confidence 688999999999999999999999999999999 9999999999999997 77
Q ss_pred ---CCCCcccchhccccccCCCCC--ceEEEEeccc
Q psy16633 366 ---FPLDIQCYIHRAGRTARGKNQ--GTALSFVSLR 396 (540)
Q Consensus 366 ---~p~s~~~yiqr~GRagR~g~~--g~~i~~~~~~ 396 (540)
.|.+..+|.||+|||||.|.+ |.+++++...
T Consensus 362 ~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~ 397 (737)
T PRK02362 362 AGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSY 397 (737)
T ss_pred CCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCc
Confidence 588999999999999999875 8899988754
No 44
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=3e-44 Score=398.67 Aligned_cols=333 Identities=20% Similarity=0.262 Sum_probs=257.0
Q ss_pred cCCCCHHHHHHHHHCCCCCChHHHHHHHHH-HhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCc
Q psy16633 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPL-ILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPS 100 (540)
Q Consensus 22 ~~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~-il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt 100 (540)
++++++.+.+.+.+.||.+|+|+|.+|++. ++.|+|++++||||||||++|.+|+++.++. .+.++||++|+
T Consensus 5 ~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~-------~~~~~l~l~P~ 77 (720)
T PRK00254 5 ELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR-------EGGKAVYLVPL 77 (720)
T ss_pred HcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh-------cCCeEEEEeCh
Confidence 578999999999999999999999999986 7899999999999999999999999998754 35789999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCcccc
Q psy16633 101 KELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLV 180 (540)
Q Consensus 101 ~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l 180 (540)
++|+.|+++.+..+. .. ++.+..++|+.+.... ..+.++|+|+||+++..++......+ +++++||+||+|.+
T Consensus 78 ~aLa~q~~~~~~~~~-~~--g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~~~l-~~l~lvViDE~H~l 150 (720)
T PRK00254 78 KALAEEKYREFKDWE-KL--GLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGSSWI-KDVKLVVADEIHLI 150 (720)
T ss_pred HHHHHHHHHHHHHHh-hc--CCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCchhh-hcCCEEEEcCcCcc
Confidence 999999999998753 23 6788888887654322 23578999999999988887665444 89999999999999
Q ss_pred ccCCcHHHHHHHHHhCCcccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCC-eEEEEEEcCcc-------cH
Q psy16633 181 FSFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQ-LAHYHILAQED-------EK 252 (540)
Q Consensus 181 ~~~~~~~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~-l~~~~~~~~~~-------~k 252 (540)
.+.+++..+..++..++...|++++|||+++. ..+.. ++..+.... .....+.... ..+........ ..
T Consensus 151 ~~~~rg~~le~il~~l~~~~qiI~lSATl~n~-~~la~-wl~~~~~~~-~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~ 227 (720)
T PRK00254 151 GSYDRGATLEMILTHMLGRAQILGLSATVGNA-EELAE-WLNAELVVS-DWRPVKLRKGVFYQGFLFWEDGKIERFPNSW 227 (720)
T ss_pred CCccchHHHHHHHHhcCcCCcEEEEEccCCCH-HHHHH-HhCCccccC-CCCCCcceeeEecCCeeeccCcchhcchHHH
Confidence 99899999999999998889999999999863 33333 333221111 0000000000 00111111111 11
Q ss_pred HHHHHHHHHhcccCCcEEEEecChhhHHHHHHHHHh---------------------------------CCCceEEeCCC
Q psy16633 253 ATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQ---------------------------------FKISTCVLNSE 299 (540)
Q Consensus 253 ~~~l~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~---------------------------------~~~~~~~l~~~ 299 (540)
...+...++ .++++||||+|+..|+.++..|.. ...+++.+|++
T Consensus 228 ~~~~~~~i~---~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHag 304 (720)
T PRK00254 228 ESLVYDAVK---KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAG 304 (720)
T ss_pred HHHHHHHHH---hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCC
Confidence 223334443 357899999999999887766532 12358999999
Q ss_pred CCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEe-------CCCCC-Ccc
Q psy16633 300 LPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVIN-------FDFPL-DIQ 371 (540)
Q Consensus 300 l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~-------~d~p~-s~~ 371 (540)
|++.+|..+++.|++|.++|||||+ ++++|+|+|.+++||. ++.|. +..
T Consensus 305 l~~~eR~~ve~~F~~G~i~VLvaT~-----------------------tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~ 361 (720)
T PRK00254 305 LGRTERVLIEDAFREGLIKVITATP-----------------------TLSAGINLPAFRVIIRDTKRYSNFGWEDIPVL 361 (720)
T ss_pred CCHHHHHHHHHHHHCCCCeEEEeCc-----------------------HHhhhcCCCceEEEECCceEcCCCCceeCCHH
Confidence 9999999999999999999999999 9999999999999994 55554 567
Q ss_pred cchhccccccCCC--CCceEEEEecccc
Q psy16633 372 CYIHRAGRTARGK--NQGTALSFVSLRE 397 (540)
Q Consensus 372 ~yiqr~GRagR~g--~~g~~i~~~~~~e 397 (540)
+|.||+|||||.| ..|.+++++...+
T Consensus 362 ~~~Qm~GRAGR~~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 362 EIQQMMGRAGRPKYDEVGEAIIVATTEE 389 (720)
T ss_pred HHHHhhhccCCCCcCCCceEEEEecCcc
Confidence 8999999999976 5699999987544
No 45
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=1.7e-43 Score=382.44 Aligned_cols=318 Identities=15% Similarity=0.177 Sum_probs=247.9
Q ss_pred CCCCCChHHHHHHHHHHhcCC-cEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHH
Q psy16633 36 LGWLEPTLIQERAIPLILQNK-DVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQEL 114 (540)
Q Consensus 36 ~g~~~pt~~Q~~ai~~il~gk-d~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l 114 (540)
.||. |||||+++||.++.|+ ++++++|||||||.++.++++... . ......++++++|||+|+.|+++.+..+
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~-~----~~~~~~rLv~~vPtReLa~Qi~~~~~~~ 85 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVE-I----GAKVPRRLVYVVNRRTVVDQVTEEAEKI 85 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhcccc-c----cccccceEEEeCchHHHHHHHHHHHHHH
Confidence 5997 9999999999999998 588899999999997765555321 1 1122345556789999999999999999
Q ss_pred HhhcC---------------------CCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCC---------
Q psy16633 115 TMKCS---------------------RDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLD--------- 164 (540)
Q Consensus 115 ~~~~~---------------------~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~--------- 164 (540)
+.... ..+++..++||.+...+...+..+++|||+|+ +++.++.++
T Consensus 86 ~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~----D~i~sr~L~~gYg~~~~~ 161 (844)
T TIGR02621 86 GERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTV----DMIGSRLLFSGYGCGFKS 161 (844)
T ss_pred HHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECH----HHHcCCcccccccccccc
Confidence 87652 14788999999999889888888999999995 455554431
Q ss_pred ------ccCCccEEEEcCccccccCCcHHHHHHHHHhC--Ccc---cceeeEeeeccHHHHHHHHHhcCCCeEEEecCCC
Q psy16633 165 ------LKSSLEIVIIDEADLVFSFGYEDDMKAVLKFL--PKL---YQAILASATLSEDVLSLKHLILRNPVILKLEEPA 233 (540)
Q Consensus 165 ------~~~~l~~lViDEah~l~~~~~~~~l~~i~~~l--~~~---~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~ 233 (540)
++.++++||+|||| ++.+|.+++..|++.+ ++. +|+++||||++.++..+...++.+|..+.+....
T Consensus 162 ~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~ 239 (844)
T TIGR02621 162 RPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKR 239 (844)
T ss_pred ccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeeccccc
Confidence 13789999999999 6789999999999975 432 6999999999998888877787777766554433
Q ss_pred CCCCCCeEEEEEEcCcccHHHHHHHHH-H-hcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHH-----
Q psy16633 234 IAPVSQLAHYHILAQEDEKATILYTLL-K-LNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARC----- 306 (540)
Q Consensus 234 ~~~~~~l~~~~~~~~~~~k~~~l~~ll-~-~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~----- 306 (540)
.....+.++ +.++...|...+...+ . .....+++||||||++.|..++..|.+.++ ..+||+|++.+|.
T Consensus 240 -l~a~ki~q~-v~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~ 315 (844)
T TIGR02621 240 -LAAKKIVKL-VPPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKK 315 (844)
T ss_pred -ccccceEEE-EecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHH
Confidence 223445554 3444444443322221 1 122457899999999999999999998887 8899999999999
Q ss_pred HHHHHHhc----CC-------ccEEEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEeCCCCCCcccchh
Q psy16633 307 HAVYQFNQ----GL-------YDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIH 375 (540)
Q Consensus 307 ~i~~~F~~----g~-------~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiq 375 (540)
.+++.|++ |. ..|||||+ ++++|||++. ++||++..| .++|+|
T Consensus 316 ~il~~Fk~~~~~g~~~~~~~g~~ILVATd-----------------------VaerGLDId~-d~VI~d~aP--~esyIQ 369 (844)
T TIGR02621 316 EIFNRFLPQMLSGSRARPQQGTVYLVCTS-----------------------AGEVGVNISA-DHLVCDLAP--FESMQQ 369 (844)
T ss_pred HHHHHHhccccccccccccccceEEeccc-----------------------hhhhcccCCc-ceEEECCCC--HHHHHH
Confidence 78999987 44 68999999 9999999986 889998877 689999
Q ss_pred ccccccCCCCC-ceEEEEecc
Q psy16633 376 RAGRTARGKNQ-GTALSFVSL 395 (540)
Q Consensus 376 r~GRagR~g~~-g~~i~~~~~ 395 (540)
|+||+||.|+. +.+++++..
T Consensus 370 RiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 370 RFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred HhcccCCCCCCCCceEEEEee
Confidence 99999999985 455777754
No 46
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=2e-43 Score=392.54 Aligned_cols=324 Identities=19% Similarity=0.203 Sum_probs=255.0
Q ss_pred cCCCCHHHHHHHHH-CCCCCChHHHHHHHHHHhcC------CcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEE
Q psy16633 22 TFTLFCIPLQAIAK-LGWLEPTLIQERAIPLILQN------KDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKA 94 (540)
Q Consensus 22 ~~~L~~~i~~~l~~-~g~~~pt~~Q~~ai~~il~g------kd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~v 94 (540)
.+..+..+.+.+.+ ++| .||++|.+||+.++++ +|++++|+||||||.+|+.|++..+. .+.++
T Consensus 433 ~~~~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~--------~g~qv 503 (926)
T TIGR00580 433 AFPPDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVL--------DGKQV 503 (926)
T ss_pred CCCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHH--------hCCeE
Confidence 34556666666655 689 6999999999999985 79999999999999999999998873 36789
Q ss_pred EEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhh----hhCCCCEEEEChHHHHHHHhcCcCCccCCcc
Q psy16633 95 LVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL----LVERPDIVVATPARALAHLKAKTLDLKSSLE 170 (540)
Q Consensus 95 lil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~----l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~ 170 (540)
+|++||++||.|+++.++.++... ++++..++|......+... ..+.++|+|+||..+ ...+.+ .+++
T Consensus 504 lvLvPT~~LA~Q~~~~f~~~~~~~--~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f-~~L~ 575 (926)
T TIGR00580 504 AVLVPTTLLAQQHFETFKERFANF--PVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL-----QKDVKF-KDLG 575 (926)
T ss_pred EEEeCcHHHHHHHHHHHHHHhccC--CcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh-----hCCCCc-ccCC
Confidence 999999999999999999987765 6777777776554333322 234689999999532 234455 8999
Q ss_pred EEEEcCccccccCCcHHHHHHHHHhCCcccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcCcc
Q psy16633 171 IVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQED 250 (540)
Q Consensus 171 ~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~~ 250 (540)
++||||+|++ | ......+..++...|+++||||+.+....+......++..+....... ..+..++.....
T Consensus 576 llVIDEahrf---g--v~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R---~~V~t~v~~~~~- 646 (926)
T TIGR00580 576 LLIIDEEQRF---G--VKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDR---LPVRTFVMEYDP- 646 (926)
T ss_pred EEEeeccccc---c--hhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCc---cceEEEEEecCH-
Confidence 9999999973 2 234455666777899999999998877666666677777766443221 124444433222
Q ss_pred cHHHHHHHHHHhcccCCcEEEEecChhhHHHHHHHHHhC--CCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCcc
Q psy16633 251 EKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQF--KISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL 328 (540)
Q Consensus 251 ~k~~~l~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~--~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~ 328 (540)
..+...+.+....+++++||||+++.++.++..|++. ++++..+||+|++.+|..++++|.+|+++|||||+
T Consensus 647 --~~i~~~i~~el~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~---- 720 (926)
T TIGR00580 647 --ELVREAIRRELLRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTT---- 720 (926)
T ss_pred --HHHHHHHHHHHHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECC----
Confidence 1122222222234679999999999999999999985 78999999999999999999999999999999999
Q ss_pred CCcccccccccccccCccccccccCCCCCcCEEEeCCCCC-CcccchhccccccCCCCCceEEEEeccc
Q psy16633 329 ETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPL-DIQCYIHRAGRTARGKNQGTALSFVSLR 396 (540)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~-s~~~yiqr~GRagR~g~~g~~i~~~~~~ 396 (540)
++++|+|+|++++||+++.|. +..+|.||+||+||.|+.|.|++++.+.
T Consensus 721 -------------------iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 721 -------------------IIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred -------------------hhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 999999999999999999975 6779999999999999999999998754
No 47
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=1.5e-42 Score=373.18 Aligned_cols=336 Identities=22% Similarity=0.256 Sum_probs=269.8
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHH
Q psy16633 25 LFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELC 104 (540)
Q Consensus 25 L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La 104 (540)
|++++.+++... |.+||+.|.+|||.+.+|+|+|+.||||||||.|+.+|++..+++........+..+|||+|.|+|.
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn 86 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALN 86 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHH
Confidence 799999999999 8899999999999999999999999999999999999999999986322335679999999999999
Q ss_pred HHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCc-CCccCCccEEEEcCccccccC
Q psy16633 105 NQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKT-LDLKSSLEIVIIDEADLVFSF 183 (540)
Q Consensus 105 ~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~-~~~~~~l~~lViDEah~l~~~ 183 (540)
..+.+.+...+... ++.+..-+|+.............|||+++||+.|.-++.... ...+.++.++||||+|.+.+.
T Consensus 87 ~Di~~rL~~~~~~~--G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~s 164 (814)
T COG1201 87 NDIRRRLEEPLREL--GIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAES 164 (814)
T ss_pred HHHHHHHHHHHHHc--CCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhcc
Confidence 99999999999988 455577889988888888888899999999999988876633 334489999999999998876
Q ss_pred CcHHH----HHHHHHhCCcccceeeEeeeccHHHHHHHHHhcCC-CeEEEecCCCCCCCCCeEEEEEEcCcc--------
Q psy16633 184 GYEDD----MKAVLKFLPKLYQAILASATLSEDVLSLKHLILRN-PVILKLEEPAIAPVSQLAHYHILAQED-------- 250 (540)
Q Consensus 184 ~~~~~----l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~l~~-p~~i~~~~~~~~~~~~l~~~~~~~~~~-------- 250 (540)
..+.. ++.+....+ ..|.|++|||..+.......+...+ ++.+.-..... ..... +..+..
T Consensus 165 KRG~~Lsl~LeRL~~l~~-~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k----~~~i~-v~~p~~~~~~~~~~ 238 (814)
T COG1201 165 KRGVQLALSLERLRELAG-DFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAK----KLEIK-VISPVEDLIYDEEL 238 (814)
T ss_pred ccchhhhhhHHHHHhhCc-ccEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCC----cceEE-EEecCCccccccch
Confidence 65544 444444445 7899999999986555444444443 44333222111 11111 112211
Q ss_pred --cHHHHHHHHHHhcccCCcEEEEecChhhHHHHHHHHHhCC-CceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCc
Q psy16633 251 --EKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFK-ISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327 (540)
Q Consensus 251 --~k~~~l~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~-~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~ 327 (540)
.....+..+++ ....+|||+||+..++.+...|.+.+ ..+.++||.++.+.|..+.++|++|+.+.+|||.
T Consensus 239 ~~~~~~~i~~~v~---~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TS--- 312 (814)
T COG1201 239 WAALYERIAELVK---KHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATS--- 312 (814)
T ss_pred hHHHHHHHHHHHh---hcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEcc---
Confidence 12333444444 34589999999999999999999876 8999999999999999999999999999999999
Q ss_pred cCCcccccccccccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCC-CCCceEEEEecc
Q psy16633 328 LETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARG-KNQGTALSFVSL 395 (540)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~-g~~g~~i~~~~~ 395 (540)
+++-|||+.+++.||+++.|.++..++||+||+|+. +....++.+...
T Consensus 313 --------------------SLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 313 --------------------SLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred --------------------chhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 999999999999999999999999999999999964 444556665544
No 48
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=2.2e-42 Score=391.95 Aligned_cols=318 Identities=18% Similarity=0.193 Sum_probs=250.3
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHhcC------CcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCc
Q psy16633 27 CIPLQAIAKLGWLEPTLIQERAIPLILQN------KDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPS 100 (540)
Q Consensus 27 ~~i~~~l~~~g~~~pt~~Q~~ai~~il~g------kd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt 100 (540)
.+..+....++| .||++|.+||+.++++ +|++++|+||+|||.+|+.+++..+ ..+.+++|++||
T Consensus 588 ~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~--------~~g~qvlvLvPT 658 (1147)
T PRK10689 588 EQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV--------ENHKQVAVLVPT 658 (1147)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHH--------HcCCeEEEEeCc
Confidence 445666777899 7999999999999997 7999999999999999988887665 247899999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhh----CCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcC
Q psy16633 101 KELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLV----ERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDE 176 (540)
Q Consensus 101 ~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDE 176 (540)
++||.|+++.+...+... .+.+..+++......+...+. +.++|+|+||+.+ . ..+.+ .+++++||||
T Consensus 659 ~eLA~Q~~~~f~~~~~~~--~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~-~~v~~-~~L~lLVIDE 730 (1147)
T PRK10689 659 TLLAQQHYDNFRDRFANW--PVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----Q-SDVKW-KDLGLLIVDE 730 (1147)
T ss_pred HHHHHHHHHHHHHhhccC--CceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----h-CCCCH-hhCCEEEEec
Confidence 999999999999876554 567777777766555544332 5789999999743 2 33445 7899999999
Q ss_pred ccccccCCcHHHHHHHHHhCCcccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcCcccHHHHH
Q psy16633 177 ADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATIL 256 (540)
Q Consensus 177 ah~l~~~~~~~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~~~k~~~l 256 (540)
+|++ |+. ....+..++.++|+++||||+.+....+....+.++..+....... ..+.++...... ....
T Consensus 731 ahrf---G~~--~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r---~~v~~~~~~~~~---~~~k 799 (1147)
T PRK10689 731 EHRF---GVR--HKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARR---LAVKTFVREYDS---LVVR 799 (1147)
T ss_pred hhhc---chh--HHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCC---CCceEEEEecCc---HHHH
Confidence 9986 433 2344567788899999999998888787777888998876543321 224444333222 1112
Q ss_pred HHHHHhcccCCcEEEEecChhhHHHHHHHHHhC--CCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccc
Q psy16633 257 YTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQF--KISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQIN 334 (540)
Q Consensus 257 ~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~--~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~ 334 (540)
..+++....+++++||||++..++.++..|.+. +.++.++||+|++.+|..++.+|.+|+++|||||+
T Consensus 800 ~~il~el~r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTd---------- 869 (1147)
T PRK10689 800 EAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT---------- 869 (1147)
T ss_pred HHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECc----------
Confidence 223332234679999999999999999999887 78999999999999999999999999999999999
Q ss_pred cccccccccCccccccccCCCCCcCEEEeCCCC-CCcccchhccccccCCCCCceEEEEecc
Q psy16633 335 STNNRKRKRDKESGVSRGIDFQFVSNVINFDFP-LDIQCYIHRAGRTARGKNQGTALSFVSL 395 (540)
Q Consensus 335 ~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p-~s~~~yiqr~GRagR~g~~g~~i~~~~~ 395 (540)
++++|+|+|++++||..+.. .+..+|+||+||+||.|+.|.|++++..
T Consensus 870 -------------IierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 870 -------------IIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred -------------hhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 99999999999999943332 2345699999999999999999998864
No 49
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=1.2e-41 Score=376.34 Aligned_cols=329 Identities=17% Similarity=0.167 Sum_probs=244.7
Q ss_pred cCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcH
Q psy16633 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSK 101 (540)
Q Consensus 22 ~~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~ 101 (540)
+++|++.+++.+.+.||. ++++|.+|++.+.+|++++++||||||||+++.+++++.+.. +.++||++|++
T Consensus 5 ~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~--------~~k~v~i~P~r 75 (674)
T PRK01172 5 DLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA--------GLKSIYIVPLR 75 (674)
T ss_pred hcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh--------CCcEEEEechH
Confidence 578999999999999996 999999999999999999999999999999999999988742 56899999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccc
Q psy16633 102 ELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVF 181 (540)
Q Consensus 102 ~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~ 181 (540)
+||.|+++.+..+. .. ++.+...+|+..... . ....++|+|+||+++..++.+....+ .+++++|+||||++.
T Consensus 76 aLa~q~~~~~~~l~-~~--g~~v~~~~G~~~~~~--~-~~~~~dIiv~Tpek~~~l~~~~~~~l-~~v~lvViDEaH~l~ 148 (674)
T PRK01172 76 SLAMEKYEELSRLR-SL--GMRVKISIGDYDDPP--D-FIKRYDVVILTSEKADSLIHHDPYII-NDVGLIVADEIHIIG 148 (674)
T ss_pred HHHHHHHHHHHHHh-hc--CCeEEEEeCCCCCCh--h-hhccCCEEEECHHHHHHHHhCChhHH-hhcCEEEEecchhcc
Confidence 99999999998764 22 566667777654322 1 22568999999999988887655444 889999999999998
Q ss_pred cCCcHHHHHHHHHh---CCcccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeE-----EEEEEcCcccHH
Q psy16633 182 SFGYEDDMKAVLKF---LPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLA-----HYHILAQEDEKA 253 (540)
Q Consensus 182 ~~~~~~~l~~i~~~---l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~-----~~~~~~~~~~k~ 253 (540)
+.+++..++.++.. ++...|++++|||+++. ..+.. ++..+.+ . ....+.+.... +.+.........
T Consensus 149 d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n~-~~la~-wl~~~~~-~--~~~r~vpl~~~i~~~~~~~~~~~~~~~~ 223 (674)
T PRK01172 149 DEDRGPTLETVLSSARYVNPDARILALSATVSNA-NELAQ-WLNASLI-K--SNFRPVPLKLGILYRKRLILDGYERSQV 223 (674)
T ss_pred CCCccHHHHHHHHHHHhcCcCCcEEEEeCccCCH-HHHHH-HhCCCcc-C--CCCCCCCeEEEEEecCeeeecccccccc
Confidence 88888777776554 45678999999999763 33333 2222111 0 00001100000 001100111111
Q ss_pred HHHHHHHHh-cccCCcEEEEecChhhHHHHHHHHHhC-------------------------CCceEEeCCCCCHHHHHH
Q psy16633 254 TILYTLLKL-NLVQGKTIIFVNTVDKCYKLKLYLEQF-------------------------KISTCVLNSELPAKARCH 307 (540)
Q Consensus 254 ~~l~~ll~~-~~~~~k~IIF~~s~~~~~~l~~~L~~~-------------------------~~~~~~l~~~l~~~~r~~ 307 (540)
. +..+++. ...++++||||+++..|+.++..|.+. ..++..+||+|++.+|..
T Consensus 224 ~-~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ 302 (674)
T PRK01172 224 D-INSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRF 302 (674)
T ss_pred c-HHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHH
Confidence 1 2222222 234679999999999999999888653 125788999999999999
Q ss_pred HHHHHhcCCccEEEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEeCCC---------CCCcccchhccc
Q psy16633 308 AVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDF---------PLDIQCYIHRAG 378 (540)
Q Consensus 308 i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~---------p~s~~~yiqr~G 378 (540)
+++.|++|.++|||||+ ++++|+|+|+.. ||+.|. |.+..+|.||+|
T Consensus 303 ve~~f~~g~i~VLvaT~-----------------------~la~Gvnipa~~-VII~~~~~~~~~~~~~~s~~~~~Qm~G 358 (674)
T PRK01172 303 IEEMFRNRYIKVIVATP-----------------------TLAAGVNLPARL-VIVRDITRYGNGGIRYLSNMEIKQMIG 358 (674)
T ss_pred HHHHHHcCCCeEEEecc-----------------------hhhccCCCcceE-EEEcCceEeCCCCceeCCHHHHHHHhh
Confidence 99999999999999999 999999999864 554443 457788999999
Q ss_pred cccCCCC--CceEEEEeccc
Q psy16633 379 RTARGKN--QGTALSFVSLR 396 (540)
Q Consensus 379 RagR~g~--~g~~i~~~~~~ 396 (540)
||||.|. .|.+++++...
T Consensus 359 RAGR~g~d~~g~~~i~~~~~ 378 (674)
T PRK01172 359 RAGRPGYDQYGIGYIYAASP 378 (674)
T ss_pred cCCCCCCCCcceEEEEecCc
Confidence 9999985 57777776543
No 50
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.4e-42 Score=358.12 Aligned_cols=323 Identities=23% Similarity=0.284 Sum_probs=250.5
Q ss_pred HHHHHH-CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHH
Q psy16633 30 LQAIAK-LGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLH 108 (540)
Q Consensus 30 ~~~l~~-~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~ 108 (540)
...|+. +||..+++-|+++|..+++|+|+++.+|||+|||+||.+|++-. .+-+|||+|..+|...+.
T Consensus 6 ~~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~-----------~G~TLVVSPLiSLM~DQV 74 (590)
T COG0514 6 QQVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL-----------EGLTLVVSPLISLMKDQV 74 (590)
T ss_pred HHHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc-----------CCCEEEECchHHHHHHHH
Confidence 344555 59999999999999999999999999999999999999998732 347899999999999989
Q ss_pred HHHHHHHhhcCCCceEEEeecCcccccc----hhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCC
Q psy16633 109 KNIQELTMKCSRDVKCVDISEQVDVSVQ----EPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFG 184 (540)
Q Consensus 109 ~~l~~l~~~~~~~i~~~~~~~~~~~~~~----~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~ 184 (540)
+.++..+ +....+.+..+...+ .....+..++++-+|+++.+-.....+.- ..+.++|||||||+.+||
T Consensus 75 ~~l~~~G------i~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~-~~i~l~vIDEAHCiSqWG 147 (590)
T COG0514 75 DQLEAAG------IRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKR-LPISLVAIDEAHCISQWG 147 (590)
T ss_pred HHHHHcC------ceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHh-CCCceEEechHHHHhhcC
Confidence 8888774 444555444333333 23344568999999999765432222222 678899999999999998
Q ss_pred --cHHHHHHHH---HhCCcccceeeEeeeccHHHHHHHH--HhcCCCeEEEecCCCCCCCCCeEEEEEEc-CcccHHHHH
Q psy16633 185 --YEDDMKAVL---KFLPKLYQAILASATLSEDVLSLKH--LILRNPVILKLEEPAIAPVSQLAHYHILA-QEDEKATIL 256 (540)
Q Consensus 185 --~~~~l~~i~---~~l~~~~q~il~SATl~~~~~~~~~--~~l~~p~~i~~~~~~~~~~~~l~~~~~~~-~~~~k~~~l 256 (540)
|+.++..+- ..+| +.+++.+|||.++.+..... +.+..|..+...-.. .++....... +..++...+
T Consensus 148 hdFRP~Y~~lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdR----pNi~~~v~~~~~~~~q~~fi 222 (590)
T COG0514 148 HDFRPDYRRLGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDR----PNLALKVVEKGEPSDQLAFL 222 (590)
T ss_pred CccCHhHHHHHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCC----chhhhhhhhcccHHHHHHHH
Confidence 777766654 4455 67999999999998876544 334454333322111 1121111111 122222222
Q ss_pred HHHHHhcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccc
Q psy16633 257 YTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINST 336 (540)
Q Consensus 257 ~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~ 336 (540)
.. ......+..||||.|+..++.++.+|.+.|+.+..+|+||+..+|..+.+.|..++.+|+|||.
T Consensus 223 ~~--~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~------------ 288 (590)
T COG0514 223 AT--VLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATN------------ 288 (590)
T ss_pred Hh--hccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEec------------
Confidence 21 1233456789999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEEeccccccc
Q psy16633 337 NNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDL 400 (540)
Q Consensus 337 ~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e~~~ 400 (540)
++++|||-|||++|||||+|.|+++|+|.+|||||.|.+..|++++++.|...
T Consensus 289 -----------AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~ 341 (590)
T COG0514 289 -----------AFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRW 341 (590)
T ss_pred -----------cccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEEeeccccHHH
Confidence 99999999999999999999999999999999999999999999999988654
No 51
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=7.4e-41 Score=367.41 Aligned_cols=316 Identities=16% Similarity=0.208 Sum_probs=238.9
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHhcC------CcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHH
Q psy16633 29 PLQAIAKLGWLEPTLIQERAIPLILQN------KDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKE 102 (540)
Q Consensus 29 i~~~l~~~g~~~pt~~Q~~ai~~il~g------kd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~ 102 (540)
+-.....++| .||++|++||+.+.++ .+.+++|+||||||.+|++|+++.+ ..+.+++|++||++
T Consensus 251 ~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~--------~~g~q~lilaPT~~ 321 (681)
T PRK10917 251 LKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAI--------EAGYQAALMAPTEI 321 (681)
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHH--------HcCCeEEEEeccHH
Confidence 3445566899 6999999999999987 4799999999999999999999887 35789999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCceEEEeecCcccccchh----hhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCcc
Q psy16633 103 LCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEP----LLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEAD 178 (540)
Q Consensus 103 La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~----~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah 178 (540)
||.|+++.+++++... ++++..++|+........ ...+.++|+|+||+.+.+ ...+ .+++++||||+|
T Consensus 322 LA~Q~~~~l~~l~~~~--~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~-~~l~lvVIDE~H 393 (681)
T PRK10917 322 LAEQHYENLKKLLEPL--GIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEF-HNLGLVIIDEQH 393 (681)
T ss_pred HHHHHHHHHHHHHhhc--CcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchh-cccceEEEechh
Confidence 9999999999998766 688889999876543332 223469999999988743 2334 789999999999
Q ss_pred ccccCCcHHHHHHHHHhCCcccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcCcccHHHHHHH
Q psy16633 179 LVFSFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYT 258 (540)
Q Consensus 179 ~l~~~~~~~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~ 258 (540)
++.. .....+.......++++||||+.+....+......++..+..... ....+..++.. ...+..++..
T Consensus 394 rfg~-----~qr~~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p~---~r~~i~~~~~~--~~~~~~~~~~ 463 (681)
T PRK10917 394 RFGV-----EQRLALREKGENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELPP---GRKPITTVVIP--DSRRDEVYER 463 (681)
T ss_pred hhhH-----HHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCCC---CCCCcEEEEeC--cccHHHHHHH
Confidence 7522 223333334556899999999877655444332223333321111 11224444332 2223333333
Q ss_pred HHHhcccCCcEEEEecChh--------hHHHHHHHHHhC--CCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCcc
Q psy16633 259 LLKLNLVQGKTIIFVNTVD--------KCYKLKLYLEQF--KISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL 328 (540)
Q Consensus 259 ll~~~~~~~k~IIF~~s~~--------~~~~l~~~L~~~--~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~ 328 (540)
+.+....+.+++|||+.++ .+..++..|.+. ++++..+||+|++.+|..++++|.+|+.+|||||+
T Consensus 464 i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~---- 539 (681)
T PRK10917 464 IREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATT---- 539 (681)
T ss_pred HHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECc----
Confidence 3332234569999999654 455667777664 57899999999999999999999999999999999
Q ss_pred CCcccccccccccccCccccccccCCCCCcCEEEeCCCCC-CcccchhccccccCCCCCceEEEEec
Q psy16633 329 ETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPL-DIQCYIHRAGRTARGKNQGTALSFVS 394 (540)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~-s~~~yiqr~GRagR~g~~g~~i~~~~ 394 (540)
++++|+|+|++++||++|.|. ....|.||+||+||+|..|.|++++.
T Consensus 540 -------------------vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 540 -------------------VIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred -------------------ceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 999999999999999999997 56788899999999999999999995
No 52
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=2e-40 Score=361.79 Aligned_cols=319 Identities=19% Similarity=0.216 Sum_probs=237.0
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHhcC------CcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCc
Q psy16633 27 CIPLQAIAKLGWLEPTLIQERAIPLILQN------KDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPS 100 (540)
Q Consensus 27 ~~i~~~l~~~g~~~pt~~Q~~ai~~il~g------kd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt 100 (540)
..+.+.+..++| +||++|++||+.++++ .+.+++|+||||||.+|++|++..+ ..+.+++|++||
T Consensus 223 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~--------~~g~qvlilaPT 293 (630)
T TIGR00643 223 ELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAI--------EAGYQVALMAPT 293 (630)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHH--------HcCCcEEEECCH
Confidence 345567788999 7999999999999986 2589999999999999999999887 347789999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchh----hhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcC
Q psy16633 101 KELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEP----LLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDE 176 (540)
Q Consensus 101 ~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~----~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDE 176 (540)
++||.|+++.+++++... ++++..++|+........ ...+.++|+|+||+.+.+ ...+ .+++++||||
T Consensus 294 ~~LA~Q~~~~~~~l~~~~--gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~-~~l~lvVIDE 365 (630)
T TIGR00643 294 EILAEQHYNSLRNLLAPL--GIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEF-KRLALVIIDE 365 (630)
T ss_pred HHHHHHHHHHHHHHhccc--CcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccc-cccceEEEec
Confidence 999999999999988765 688888988876544322 223568999999998743 2344 7899999999
Q ss_pred ccccccCCcHHHHHHHHHhCC--cccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcCcccHHH
Q psy16633 177 ADLVFSFGYEDDMKAVLKFLP--KLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKAT 254 (540)
Q Consensus 177 ah~l~~~~~~~~l~~i~~~l~--~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~~~k~~ 254 (540)
+|++.. . ....+....+ ...++++||||+.+....+......+...+..... ....+..++. ....+..
T Consensus 366 aH~fg~---~-qr~~l~~~~~~~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p~---~r~~i~~~~~--~~~~~~~ 436 (630)
T TIGR00643 366 QHRFGV---E-QRKKLREKGQGGFTPHVLVMSATPIPRTLALTVYGDLDTSIIDELPP---GRKPITTVLI--KHDEKDI 436 (630)
T ss_pred hhhccH---H-HHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhcCCcceeeeccCCC---CCCceEEEEe--CcchHHH
Confidence 996422 1 1222333332 25789999999876544332211112222211111 1122333332 2233333
Q ss_pred HHHHHHHhcccCCcEEEEecChh--------hHHHHHHHHHhC--CCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCC
Q psy16633 255 ILYTLLKLNLVQGKTIIFVNTVD--------KCYKLKLYLEQF--KISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324 (540)
Q Consensus 255 ~l~~ll~~~~~~~k~IIF~~s~~--------~~~~l~~~L~~~--~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~ 324 (540)
.+..+.+....+.+++|||+.++ .++.++..|.+. ++++..+||+|++.+|..+++.|++|+.+|||||+
T Consensus 437 ~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~ 516 (630)
T TIGR00643 437 VYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATT 516 (630)
T ss_pred HHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECc
Confidence 33333333234568999998763 466677777653 67899999999999999999999999999999999
Q ss_pred CCccCCcccccccccccccCccccccccCCCCCcCEEEeCCCCC-CcccchhccccccCCCCCceEEEEec
Q psy16633 325 EKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPL-DIQCYIHRAGRTARGKNQGTALSFVS 394 (540)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~-s~~~yiqr~GRagR~g~~g~~i~~~~ 394 (540)
++++|+|+|++++||++|.|. +...|.||+||+||+|..|.|++++.
T Consensus 517 -----------------------vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 517 -----------------------VIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred -----------------------eeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 999999999999999999986 57788899999999999999999983
No 53
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=9.9e-41 Score=380.11 Aligned_cols=307 Identities=21% Similarity=0.245 Sum_probs=227.0
Q ss_pred EEcCCCchHHHHHHHHHHHHHHhhccc-----ccCCCeEEEEEcCcHHHHHHHHHHHHHHHhh----------cCCCceE
Q psy16633 60 VRARTGSGKTGAFAIPMIQKIINLKQT-----AQVQETKALVLSPSKELCNQLHKNIQELTMK----------CSRDVKC 124 (540)
Q Consensus 60 i~a~TGsGKT~a~~ipil~~l~~~~~~-----~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~----------~~~~i~~ 124 (540)
|+||||||||++|.+|+++.++..... ....+.++|||+|+++|+.|+++.++..... ...++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999999999999999864211 1134689999999999999999998753221 1136888
Q ss_pred EEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCCcH----HHHHHHHHhCCccc
Q psy16633 125 VDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYE----DDMKAVLKFLPKLY 200 (540)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~~----~~l~~i~~~l~~~~ 200 (540)
...+|+.+...+...+...++|+|+||++|..++.+.....++++++|||||+|.+.+..++ ..+..+...++...
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 89999998887777777889999999999998876544333499999999999999875433 45666666677788
Q ss_pred ceeeEeeeccHHHHHHHHHhc-CCCeEEEecCCCCCCCCCeEEEEEEcCcccH--------------------H-HHHHH
Q psy16633 201 QAILASATLSEDVLSLKHLIL-RNPVILKLEEPAIAPVSQLAHYHILAQEDEK--------------------A-TILYT 258 (540)
Q Consensus 201 q~il~SATl~~~~~~~~~~~l-~~p~~i~~~~~~~~~~~~l~~~~~~~~~~~k--------------------~-~~l~~ 258 (540)
|+|++|||+++. +.+..... .+|+.+... ... ....+. .++......+ . .....
T Consensus 161 QrIgLSATI~n~-eevA~~L~g~~pv~Iv~~-~~~-r~~~l~-v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~ 236 (1490)
T PRK09751 161 QRIGLSATVRSA-SDVAAFLGGDRPVTVVNP-PAM-RHPQIR-IVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETG 236 (1490)
T ss_pred eEEEEEeeCCCH-HHHHHHhcCCCCEEEECC-CCC-cccceE-EEEecCchhhccccccccccccchhhhhhhhHHHHHH
Confidence 999999999874 44443332 346554322 111 111222 1222211000 0 11122
Q ss_pred HHHhcccCCcEEEEecChhhHHHHHHHHHhCC---------------------------------CceEEeCCCCCHHHH
Q psy16633 259 LLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFK---------------------------------ISTCVLNSELPAKAR 305 (540)
Q Consensus 259 ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~---------------------------------~~~~~l~~~l~~~~r 305 (540)
++......+++||||||+..|+.++..|++.. ..+..+||+|++++|
T Consensus 237 il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR 316 (1490)
T PRK09751 237 ILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQR 316 (1490)
T ss_pred HHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHH
Confidence 33322345789999999999999999987641 125689999999999
Q ss_pred HHHHHHHhcCCccEEEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCC
Q psy16633 306 CHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKN 385 (540)
Q Consensus 306 ~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~ 385 (540)
..+++.|++|.+++||||+ ++++|||+++|++||+||.|.|..+|+||+||+||..
T Consensus 317 ~~IE~~fK~G~LrvLVATs-----------------------sLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~- 372 (1490)
T PRK09751 317 AITEQALKSGELRCVVATS-----------------------SLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQV- 372 (1490)
T ss_pred HHHHHHHHhCCceEEEeCc-----------------------HHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCC-
Confidence 9999999999999999999 9999999999999999999999999999999999962
Q ss_pred CceEEEEec
Q psy16633 386 QGTALSFVS 394 (540)
Q Consensus 386 ~g~~i~~~~ 394 (540)
.|.+..++.
T Consensus 373 gg~s~gli~ 381 (1490)
T PRK09751 373 GGVSKGLFF 381 (1490)
T ss_pred CCccEEEEE
Confidence 344333333
No 54
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=1.2e-39 Score=350.94 Aligned_cols=314 Identities=19% Similarity=0.203 Sum_probs=233.8
Q ss_pred hHHHHHHHHHHhcCCcEEEEcCCCchHHHH---------HHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHH
Q psy16633 42 TLIQERAIPLILQNKDVLVRARTGSGKTGA---------FAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQ 112 (540)
Q Consensus 42 t~~Q~~ai~~il~gkd~li~a~TGsGKT~a---------~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~ 112 (540)
..+|+++++.+++|+++++.|+||||||.+ |++|.+..+..-. ....+.+++|++||++||.|+...+.
T Consensus 166 ~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~--~~~~~~~ilvt~PrreLa~qi~~~i~ 243 (675)
T PHA02653 166 PDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID--PNFIERPIVLSLPRVALVRLHSITLL 243 (675)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc--cccCCcEEEEECcHHHHHHHHHHHHH
Confidence 468999999999999999999999999986 4445554442110 01345789999999999999999887
Q ss_pred HHHhhc-CCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCCcHHHHHH
Q psy16633 113 ELTMKC-SRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKA 191 (540)
Q Consensus 113 ~l~~~~-~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~ 191 (540)
+...+. ..+..+....|+... .+........+|+++|++... ..+ +++++|||||||.+...+ +.+..
T Consensus 244 ~~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~l-------~~L-~~v~~VVIDEaHEr~~~~--DllL~ 312 (675)
T PHA02653 244 KSLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLTL-------NKL-FDYGTVIIDEVHEHDQIG--DIIIA 312 (675)
T ss_pred HHhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCcccc-------ccc-ccCCEEEccccccCccch--hHHHH
Confidence 765432 123556667777652 211222236789999975311 123 889999999999887765 44555
Q ss_pred HHHhC-CcccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcC----------cccHHHHHHHHH
Q psy16633 192 VLKFL-PKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQ----------EDEKATILYTLL 260 (540)
Q Consensus 192 i~~~l-~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~----------~~~k~~~l~~ll 260 (540)
++..+ ++..|+++||||+++++..+ ..++.+|..+.+... ....+.++++... +.++...+..+.
T Consensus 313 llk~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~gr---t~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~ 388 (675)
T PHA02653 313 VARKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPGG---TLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALK 388 (675)
T ss_pred HHHHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCCC---cCCCeEEEEeecCcccccchhhhHHHHHHHHHHHH
Confidence 55444 34459999999999888877 467788888877532 1234666665432 122333344443
Q ss_pred Hhc-ccCCcEEEEecChhhHHHHHHHHHhC--CCceEEeCCCCCHHHHHHHHHHH-hcCCccEEEeCCCCccCCcccccc
Q psy16633 261 KLN-LVQGKTIIFVNTVDKCYKLKLYLEQF--KISTCVLNSELPAKARCHAVYQF-NQGLYDVIIASDEKALETPQINST 336 (540)
Q Consensus 261 ~~~-~~~~k~IIF~~s~~~~~~l~~~L~~~--~~~~~~l~~~l~~~~r~~i~~~F-~~g~~~iLIaT~~~~~~~~~~~~~ 336 (540)
+.. ...+.+||||+++.+|+.+...|++. ++.+..+||+|++. .+.++.| ++|..+||||||
T Consensus 389 ~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATd------------ 454 (675)
T PHA02653 389 KYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTP------------ 454 (675)
T ss_pred HhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccC------------
Confidence 322 23468999999999999999999887 78999999999975 4667777 689999999999
Q ss_pred cccccccCccccccccCCCCCcCEEEeCC---CCC---------CcccchhccccccCCCCCceEEEEeccccc
Q psy16633 337 NNRKRKRDKESGVSRGIDFQFVSNVINFD---FPL---------DIQCYIHRAGRTARGKNQGTALSFVSLREQ 398 (540)
Q Consensus 337 ~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d---~p~---------s~~~yiqr~GRagR~g~~g~~i~~~~~~e~ 398 (540)
.+++|||+++|++||++| .|. |.++|+||+|||||. ++|.|+.|++..+.
T Consensus 455 -----------IAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~ 516 (675)
T PHA02653 455 -----------YLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLL 516 (675)
T ss_pred -----------hhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHh
Confidence 899999999999999999 565 788999999999999 78999999987764
No 55
>KOG0948|consensus
Probab=100.00 E-value=2e-40 Score=339.86 Aligned_cols=396 Identities=19% Similarity=0.244 Sum_probs=313.2
Q ss_pred CChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcC
Q psy16633 40 EPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCS 119 (540)
Q Consensus 40 ~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~ 119 (540)
.+-|+|..||.++-++.+++|.|+|.+|||.++-.+|.+.+ ....||||..|.++|.+|.|+.+..-+.+.
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sL--------r~kQRVIYTSPIKALSNQKYREl~~EF~DV- 199 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSL--------REKQRVIYTSPIKALSNQKYRELLEEFKDV- 199 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHH--------HhcCeEEeeChhhhhcchhHHHHHHHhccc-
Confidence 46799999999999999999999999999999999988887 457899999999999999999998877666
Q ss_pred CCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCCcHHHHHHHHHhCCcc
Q psy16633 120 RDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199 (540)
Q Consensus 120 ~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~ 199 (540)
+.++|+..++ ..+.++|+|++.|.+++.+++.-+ +.+.++|+||+|.|-+..++-.|++-+-.+|++
T Consensus 200 -----GLMTGDVTIn-------P~ASCLVMTTEILRsMLYRGSEvm-rEVaWVIFDEIHYMRDkERGVVWEETIIllP~~ 266 (1041)
T KOG0948|consen 200 -----GLMTGDVTIN-------PDASCLVMTTEILRSMLYRGSEVM-REVAWVIFDEIHYMRDKERGVVWEETIILLPDN 266 (1041)
T ss_pred -----ceeecceeeC-------CCCceeeeHHHHHHHHHhccchHh-heeeeEEeeeehhccccccceeeeeeEEecccc
Confidence 6778877655 567899999999999999998766 899999999999999999999999999999999
Q ss_pred cceeeEeeeccHHHH--HHHHHhcCCCeEEEecCCCCCCCCCeEEEEEE---------cCcc-----cHHHHHH------
Q psy16633 200 YQAILASATLSEDVL--SLKHLILRNPVILKLEEPAIAPVSQLAHYHIL---------AQED-----EKATILY------ 257 (540)
Q Consensus 200 ~q~il~SATl~~~~~--~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~---------~~~~-----~k~~~l~------ 257 (540)
.+.+++|||+|+..+ .+....-..|+.+...+...+ .++||.+. +++. +.+....
T Consensus 267 vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPT---PLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~ 343 (1041)
T KOG0948|consen 267 VRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPT---PLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKA 343 (1041)
T ss_pred ceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCC---cceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhcc
Confidence 999999999998765 455566778888887765433 36666433 2222 1111111
Q ss_pred -----------------------------HHHHh--cccCCcEEEEecChhhHHHHHHHHHhCCC---------------
Q psy16633 258 -----------------------------TLLKL--NLVQGKTIIFVNTVDKCYKLKLYLEQFKI--------------- 291 (540)
Q Consensus 258 -----------------------------~ll~~--~~~~~k~IIF~~s~~~~~~l~~~L~~~~~--------------- 291 (540)
.+++. .....++|||+-++.+|+.++..+.+..+
T Consensus 344 ~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~n 423 (1041)
T KOG0948|consen 344 GESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNN 423 (1041)
T ss_pred CCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHH
Confidence 11111 01223899999999999999988876532
Q ss_pred ------------------------ceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccccccccccCccc
Q psy16633 292 ------------------------STCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKES 347 (540)
Q Consensus 292 ------------------------~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~ 347 (540)
+++++|||+-+--++.+.-.|.+|.+++|+||.
T Consensus 424 Ai~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATE----------------------- 480 (1041)
T KOG0948|consen 424 AIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATE----------------------- 480 (1041)
T ss_pred HHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhh-----------------------
Confidence 778999999999999999999999999999999
Q ss_pred cccccCCCCCcCEEEe----CCCC----CCcccchhccccccCCCCC--ceEEEEeccccccccccccchhhhhhhhhHH
Q psy16633 348 GVSRGIDFQFVSNVIN----FDFP----LDIQCYIHRAGRTARGKNQ--GTALSFVSLREQDLMNDGTALSFVSLREQDL 417 (540)
Q Consensus 348 ~~~~GiD~~~v~~Vi~----~d~p----~s~~~yiqr~GRagR~g~~--g~~i~~~~~~e~~~~~~~~~~~~~~~~~~~~ 417 (540)
+++.|+|+|.-++|+- ||.- -|..+|+|+.|||||.|-+ |.+|++++ +.
T Consensus 481 TFsiGLNMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiD--ek------------------- 539 (1041)
T KOG0948|consen 481 TFSIGLNMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMID--EK------------------- 539 (1041)
T ss_pred hhhhccCCcceeEEEeeccccCCcceeeecccceEEecccccccCCCCCceEEEEec--Cc-------------------
Confidence 9999999998777763 5543 4789999999999999975 55665554 21
Q ss_pred HHHHHHHHhhccccccccccccccchhhhhhhhhhHHHHHHhhhcccCcchhhhhccccccccccccCCCCCCCCccCCh
Q psy16633 418 MNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRSNYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPP 497 (540)
Q Consensus 418 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~d~~~~~~f~~~~~~l~~l~~~~~l~~~~~~~~l~~~p~yl~p~ 497 (540)
++......+...-.|.+.|+|..++..-|++||-.... |+|++-.
T Consensus 540 -----------------------m~~~~ak~m~kG~aD~LnSaFhLtYnMiLNLlRvEei~------------pe~~l~~ 584 (1041)
T KOG0948|consen 540 -----------------------MEPQVAKDMLKGSADPLNSAFHLTYNMILNLLRVEEIS------------PEYMLER 584 (1041)
T ss_pred -----------------------CCHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHccCC------------HHHHHHH
Confidence 11222222333346777777888888889988876443 8999999
Q ss_pred hhhhcccccccc---------chhhccCCCChhHHhHHHHHHHHHhhhhhc
Q psy16633 498 ALKKLARIEDDG---------DEDVRAEPITDEEYNKQYEEYKKRSKENER 539 (540)
Q Consensus 498 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (540)
++.+++.....| +++.+...+.+|+...+|.+++.|++.+++
T Consensus 585 SF~QFQ~~~~~P~i~~kl~~~~~~~~~i~i~~E~~v~~yh~l~~ql~~~~k 635 (1041)
T KOG0948|consen 585 SFHQFQNYKALPDIEEKLKQLEEELDSINIPNEEEVKEYHDLELQLEKYGK 635 (1041)
T ss_pred HHHHHhhhhhcchHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHHH
Confidence 999998666555 444556667899999999999999988764
No 56
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=5.7e-39 Score=365.00 Aligned_cols=301 Identities=20% Similarity=0.248 Sum_probs=235.1
Q ss_pred HHHHH-CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHH
Q psy16633 31 QAIAK-LGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHK 109 (540)
Q Consensus 31 ~~l~~-~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~ 109 (540)
+.+.+ .|+ .||++|+.++|.++.|+|+++.||||||||+ |.++++..+. ..+.+++|++||++|+.|+++
T Consensus 71 ~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~-------~~g~~alIL~PTreLa~Qi~~ 141 (1176)
T PRK09401 71 KFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLA-------KKGKKSYIIFPTRLLVEQVVE 141 (1176)
T ss_pred HHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHH-------hcCCeEEEEeccHHHHHHHHH
Confidence 34433 477 8999999999999999999999999999996 6666555442 247899999999999999999
Q ss_pred HHHHHHhhcCCCceEEEeecCccc-----ccchhhh-hCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCcccccc-
Q psy16633 110 NIQELTMKCSRDVKCVDISEQVDV-----SVQEPLL-VERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFS- 182 (540)
Q Consensus 110 ~l~~l~~~~~~~i~~~~~~~~~~~-----~~~~~~l-~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~- 182 (540)
.++.++... .+.+..+.|+... ..+...+ .+.++|+|+||++|.+++. .+.. ..++++|+||||++++
T Consensus 142 ~l~~l~~~~--~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~-~~~~~lVvDEaD~~L~~ 216 (1176)
T PRK09401 142 KLEKFGEKV--GCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPK-KKFDFVFVDDVDAVLKS 216 (1176)
T ss_pred HHHHHhhhc--CceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccc-cccCEEEEEChHHhhhc
Confidence 999998876 4555555554432 1112222 2468999999999999886 2333 5699999999999986
Q ss_pred ----------CCcH-HHHHHHHHhCCc------------------------ccceeeEeeeccHH-HHHHHHHhcCCCeE
Q psy16633 183 ----------FGYE-DDMKAVLKFLPK------------------------LYQAILASATLSED-VLSLKHLILRNPVI 226 (540)
Q Consensus 183 ----------~~~~-~~l~~i~~~l~~------------------------~~q~il~SATl~~~-~~~~~~~~l~~p~~ 226 (540)
.||. +++..++..++. ..|++++|||+++. +.. ..+.++..
T Consensus 217 ~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~ 293 (1176)
T PRK09401 217 SKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLG 293 (1176)
T ss_pred ccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccce
Confidence 5674 678888877764 67999999999874 332 23344444
Q ss_pred EEecCCCCCCCCCeEEEEEEcCcccHHHHHHHHHHhcccCCcEEEEecChhh---HHHHHHHHHhCCCceEEeCCCCCHH
Q psy16633 227 LKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDK---CYKLKLYLEQFKISTCVLNSELPAK 303 (540)
Q Consensus 227 i~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~ll~~~~~~~k~IIF~~s~~~---~~~l~~~L~~~~~~~~~l~~~l~~~ 303 (540)
+.+.... ....++.+.++.++ ++...+..+++.. +.++||||++... |+.++.+|+..|+++..+||+|
T Consensus 294 ~~v~~~~-~~~rnI~~~yi~~~--~k~~~L~~ll~~l--~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l--- 365 (1176)
T PRK09401 294 FEVGSPV-FYLRNIVDSYIVDE--DSVEKLVELVKRL--GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF--- 365 (1176)
T ss_pred EEecCcc-cccCCceEEEEEcc--cHHHHHHHHHHhc--CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH---
Confidence 4444332 23456778877665 5666777777643 3589999999877 9999999999999999999999
Q ss_pred HHHHHHHHHhcCCccEEEe----CCCCccCCcccccccccccccCccccccccCCCCC-cCEEEeCCCCC------Cccc
Q psy16633 304 ARCHAVYQFNQGLYDVIIA----SDEKALETPQINSTNNRKRKRDKESGVSRGIDFQF-VSNVINFDFPL------DIQC 372 (540)
Q Consensus 304 ~r~~i~~~F~~g~~~iLIa----T~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~-v~~Vi~~d~p~------s~~~ 372 (540)
...+++|.+|+++|||| || .++||||+|+ |++|||||+|. ..+.
T Consensus 366 --~~~l~~F~~G~~~VLVatas~td-----------------------v~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~ 420 (1176)
T PRK09401 366 --ERKFEKFEEGEVDVLVGVASYYG-----------------------VLVRGIDLPERIRYAIFYGVPKFKFSLEEELA 420 (1176)
T ss_pred --HHHHHHHHCCCCCEEEEecCCCC-----------------------ceeecCCCCcceeEEEEeCCCCEEEecccccc
Confidence 22359999999999999 57 8999999999 89999999998 6789
Q ss_pred chhcccccc
Q psy16633 373 YIHRAGRTA 381 (540)
Q Consensus 373 yiqr~GRag 381 (540)
|.||+||+.
T Consensus 421 ~~~~~~r~~ 429 (1176)
T PRK09401 421 PPFLLLRLL 429 (1176)
T ss_pred CHHHHHHHH
Confidence 999999984
No 57
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.3e-38 Score=350.75 Aligned_cols=319 Identities=15% Similarity=0.162 Sum_probs=242.8
Q ss_pred HHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHH-hhcCCCceE
Q psy16633 46 ERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELT-MKCSRDVKC 124 (540)
Q Consensus 46 ~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~-~~~~~~i~~ 124 (540)
.+.+..+.++.+++++|+||||||.+|.+++++.. ..+.+++|+.|+|++|.|+++.+.+.. ... +..+
T Consensus 8 ~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~--------~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~--g~~V 77 (819)
T TIGR01970 8 PALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAP--------GIGGKIIMLEPRRLAARSAAQRLASQLGEAV--GQTV 77 (819)
T ss_pred HHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhh--------ccCCeEEEEeCcHHHHHHHHHHHHHHhCCCc--CcEE
Confidence 45566666789999999999999999999999875 235689999999999999999886443 323 2233
Q ss_pred EEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCcc-ccccCCcHH-HHHHHHHhCCcccce
Q psy16633 125 VDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEAD-LVFSFGYED-DMKAVLKFLPKLYQA 202 (540)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah-~l~~~~~~~-~l~~i~~~l~~~~q~ 202 (540)
+...+... .....++|+|+||++|++++.+. ..+ +++++|||||+| ++++.++.- .+..+...+++..|+
T Consensus 78 Gy~vr~~~------~~s~~t~I~v~T~G~Llr~l~~d-~~L-~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlql 149 (819)
T TIGR01970 78 GYRVRGEN------KVSRRTRLEVVTEGILTRMIQDD-PEL-DGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKI 149 (819)
T ss_pred EEEEcccc------ccCCCCcEEEECCcHHHHHHhhC-ccc-ccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceE
Confidence 32222211 12346789999999999999874 344 899999999999 466655543 334566667888999
Q ss_pred eeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcCcccHH-----HHHHHHHHhcccCCcEEEEecChh
Q psy16633 203 ILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKA-----TILYTLLKLNLVQGKTIIFVNTVD 277 (540)
Q Consensus 203 il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~~~k~-----~~l~~ll~~~~~~~k~IIF~~s~~ 277 (540)
++||||++... + ..++.++.++....... .+.++|......++. ..+..++.. ..+++|||+++..
T Consensus 150 IlmSATl~~~~--l-~~~l~~~~vI~~~gr~~----pVe~~y~~~~~~~~~~~~v~~~l~~~l~~--~~g~iLVFlpg~~ 220 (819)
T TIGR01970 150 LAMSATLDGER--L-SSLLPDAPVVESEGRSF----PVEIRYLPLRGDQRLEDAVSRAVEHALAS--ETGSILVFLPGQA 220 (819)
T ss_pred EEEeCCCCHHH--H-HHHcCCCcEEEecCcce----eeeeEEeecchhhhHHHHHHHHHHHHHHh--cCCcEEEEECCHH
Confidence 99999999764 2 34555655555543322 255666665544432 223333332 3689999999999
Q ss_pred hHHHHHHHHHh---CCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccccccccccCccccccccCC
Q psy16633 278 KCYKLKLYLEQ---FKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGID 354 (540)
Q Consensus 278 ~~~~l~~~L~~---~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD 354 (540)
++..++..|++ .++.+..+||+|++++|..+++.|.+|..+|||||| ++++|||
T Consensus 221 eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATn-----------------------IAErgIt 277 (819)
T TIGR01970 221 EIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATN-----------------------IAETSLT 277 (819)
T ss_pred HHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecc-----------------------hHhhccc
Confidence 99999999987 478899999999999999999999999999999999 8999999
Q ss_pred CCCcCEEEeCCCCCC------------------cccchhccccccCCCCCceEEEEeccccccccccccchhhhhhhhh
Q psy16633 355 FQFVSNVINFDFPLD------------------IQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQ 415 (540)
Q Consensus 355 ~~~v~~Vi~~d~p~s------------------~~~yiqr~GRagR~g~~g~~i~~~~~~e~~~~~~~~~~~~~~~~~~ 415 (540)
+++|++|||+++|.. -.+|+||+|||||. .+|.|+.+++..+...+......++......
T Consensus 278 Ip~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~~l~~~~~PEI~r~~L~ 355 (819)
T TIGR01970 278 IEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQHQRLPAQDEPEILQADLS 355 (819)
T ss_pred ccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHHhhhcCCCcceeccCcH
Confidence 999999999999852 34589999999999 7999999999888777666666655544433
No 58
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=5.7e-39 Score=371.97 Aligned_cols=325 Identities=17% Similarity=0.166 Sum_probs=251.0
Q ss_pred HHHHHHHH-CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHH
Q psy16633 28 IPLQAIAK-LGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQ 106 (540)
Q Consensus 28 ~i~~~l~~-~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q 106 (540)
.+.+.+.+ +|| .||++|+.++|.+++|+|+++.||||||||++++++++... ..+.++||++||++|+.|
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~--------~~g~~aLVl~PTreLa~Q 137 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLA--------LKGKKCYIILPTTLLVKQ 137 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHH--------hcCCeEEEEECHHHHHHH
Confidence 45556666 799 69999999999999999999999999999996666554332 246799999999999999
Q ss_pred HHHHHHHHHhhcCCCceEEEeecCcccccchhh---h-hCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCcccccc
Q psy16633 107 LHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL---L-VERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFS 182 (540)
Q Consensus 107 ~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~---l-~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~ 182 (540)
+++.++.++...+.++.+..++|+.+...+... + .+.++|+|+||+++.+++... .. ..++++|+||||+|++
T Consensus 138 i~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l--~~-~~i~~iVVDEAD~ml~ 214 (1638)
T PRK14701 138 TVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM--KH-LKFDFIFVDDVDAFLK 214 (1638)
T ss_pred HHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH--hh-CCCCEEEEECceeccc
Confidence 999999998877667787888888766554322 2 346999999999998876642 22 6799999999999987
Q ss_pred C-----------CcHHHHHH----HHH----------------------hCCcccc-eeeEeeeccHHHHHHHHHhcCCC
Q psy16633 183 F-----------GYEDDMKA----VLK----------------------FLPKLYQ-AILASATLSEDVLSLKHLILRNP 224 (540)
Q Consensus 183 ~-----------~~~~~l~~----i~~----------------------~l~~~~q-~il~SATl~~~~~~~~~~~l~~p 224 (540)
| ||..++.. ++. .+|+..| .+++|||+++.... ...++++
T Consensus 215 ~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~--~~l~~~~ 292 (1638)
T PRK14701 215 ASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDR--VKLYREL 292 (1638)
T ss_pred cccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHH--HHHhhcC
Confidence 3 77766653 321 2344555 57799999964221 1234667
Q ss_pred eEEEecCCCCCCCCCeEEEEEEcCcccHHHHHHHHHHhcccCCcEEEEecChhh---HHHHHHHHHhCCCceEEeCCCCC
Q psy16633 225 VILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDK---CYKLKLYLEQFKISTCVLNSELP 301 (540)
Q Consensus 225 ~~i~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~ll~~~~~~~k~IIF~~s~~~---~~~l~~~L~~~~~~~~~l~~~l~ 301 (540)
..+.+.... ....++.+.++.+....+ ..+..+++.. +..+||||+++.. |+.++..|.+.|+++..+||+
T Consensus 293 l~f~v~~~~-~~lr~i~~~yi~~~~~~k-~~L~~ll~~~--g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-- 366 (1638)
T PRK14701 293 LGFEVGSGR-SALRNIVDVYLNPEKIIK-EHVRELLKKL--GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-- 366 (1638)
T ss_pred eEEEecCCC-CCCCCcEEEEEECCHHHH-HHHHHHHHhC--CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch--
Confidence 666665443 345668888887765555 3566666543 4589999999875 589999999999999999995
Q ss_pred HHHHHHHHHHHhcCCccEEEeCCCC-ccCCcccccccccccccCccccccccCCCCC-cCEEEeCCCCC---Ccccchhc
Q psy16633 302 AKARCHAVYQFNQGLYDVIIASDEK-ALETPQINSTNNRKRKRDKESGVSRGIDFQF-VSNVINFDFPL---DIQCYIHR 376 (540)
Q Consensus 302 ~~~r~~i~~~F~~g~~~iLIaT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~-v~~Vi~~d~p~---s~~~yiqr 376 (540)
|...+++|.+|+++|||||+.- . .++||||+|+ |++|||||+|. +.+.|.|.
T Consensus 367 ---R~~~l~~F~~G~~~VLVaT~s~~g--------------------vaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~ 423 (1638)
T PRK14701 367 ---NKKGFDLFEEGEIDYLIGVATYYG--------------------TLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPT 423 (1638)
T ss_pred ---HHHHHHHHHcCCCCEEEEecCCCC--------------------eeEecCccCCccCEEEEeCCCCCCcchhhcccc
Confidence 8899999999999999999410 0 6889999999 99999999999 88888887
Q ss_pred c-------------ccccCCCCCceEEEEecc
Q psy16633 377 A-------------GRTARGKNQGTALSFVSL 395 (540)
Q Consensus 377 ~-------------GRagR~g~~g~~i~~~~~ 395 (540)
. ||+||.|..+.++..+..
T Consensus 424 ~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~ 455 (1638)
T PRK14701 424 IYRILGLLSEILKIEEELKEGIPIEGVLDVFP 455 (1638)
T ss_pred hhhhhcchHHHHHhhhhcccCCcchhHHHhHH
Confidence 6 999999887776644433
No 59
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=4.7e-38 Score=347.15 Aligned_cols=322 Identities=17% Similarity=0.202 Sum_probs=242.2
Q ss_pred HHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHH-HhhcCCCceE
Q psy16633 46 ERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQEL-TMKCSRDVKC 124 (540)
Q Consensus 46 ~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l-~~~~~~~i~~ 124 (540)
.+.+..+.+++++++.|+||||||.+|.+|+++.. ....+++|++|||++|.|+++.+... +... +..+
T Consensus 11 ~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~--------~~~~~ilvlqPrR~aA~qia~rva~~l~~~~--g~~V 80 (812)
T PRK11664 11 PELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHG--------GINGKIIMLEPRRLAARNVAQRLAEQLGEKP--GETV 80 (812)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcC--------CcCCeEEEECChHHHHHHHHHHHHHHhCccc--CceE
Confidence 34556666789999999999999999999988753 12358999999999999999988654 3333 3344
Q ss_pred EEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccc-cccCCcH-HHHHHHHHhCCcccce
Q psy16633 125 VDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADL-VFSFGYE-DDMKAVLKFLPKLYQA 202 (540)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~-l~~~~~~-~~l~~i~~~l~~~~q~ 202 (540)
+...++... ......|+|+|||++++++... ..+ +++++|||||+|. .++.++. ..+..+...+++..|+
T Consensus 81 Gy~vr~~~~------~~~~t~I~v~T~G~Llr~l~~d-~~L-~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lql 152 (812)
T PRK11664 81 GYRMRAESK------VGPNTRLEVVTEGILTRMIQRD-PEL-SGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKL 152 (812)
T ss_pred EEEecCccc------cCCCCcEEEEChhHHHHHHhhC-CCc-CcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceE
Confidence 444443321 1235689999999999998864 344 8999999999995 3333322 2334566677888999
Q ss_pred eeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcCcccHHH-----HHHHHHHhcccCCcEEEEecChh
Q psy16633 203 ILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKAT-----ILYTLLKLNLVQGKTIIFVNTVD 277 (540)
Q Consensus 203 il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~~~k~~-----~l~~ll~~~~~~~k~IIF~~s~~ 277 (540)
++||||++... + ..++.++.++....... .+.++|+.....++.. .+..++.. ..+.+|||+++..
T Consensus 153 ilmSATl~~~~--l-~~~~~~~~~I~~~gr~~----pV~~~y~~~~~~~~~~~~v~~~l~~~l~~--~~g~iLVFlpg~~ 223 (812)
T PRK11664 153 LIMSATLDNDR--L-QQLLPDAPVIVSEGRSF----PVERRYQPLPAHQRFDEAVARATAELLRQ--ESGSLLLFLPGVG 223 (812)
T ss_pred EEEecCCCHHH--H-HHhcCCCCEEEecCccc----cceEEeccCchhhhHHHHHHHHHHHHHHh--CCCCEEEEcCCHH
Confidence 99999998752 3 34555555555543321 3566776665544442 23333332 3689999999999
Q ss_pred hHHHHHHHHHh---CCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccccccccccCccccccccCC
Q psy16633 278 KCYKLKLYLEQ---FKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGID 354 (540)
Q Consensus 278 ~~~~l~~~L~~---~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD 354 (540)
++..++..|++ .++.+..+||+|++.+|..++..|.+|..+|||||| ++++|||
T Consensus 224 ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATn-----------------------IAErsLt 280 (812)
T PRK11664 224 EIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATN-----------------------IAETSLT 280 (812)
T ss_pred HHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecc-----------------------hHHhccc
Confidence 99999999987 578899999999999999999999999999999999 8999999
Q ss_pred CCCcCEEEeCCCCC------------------CcccchhccccccCCCCCceEEEEeccccccccccccchhhhhhhhhH
Q psy16633 355 FQFVSNVINFDFPL------------------DIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQD 416 (540)
Q Consensus 355 ~~~v~~Vi~~d~p~------------------s~~~yiqr~GRagR~g~~g~~i~~~~~~e~~~~~~~~~~~~~~~~~~~ 416 (540)
+++|++|||++++. |-.+|+||+|||||. .+|.|+.+++..+...+......++.......
T Consensus 281 Ip~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~~~l~~~~~PEI~r~dL~~ 359 (812)
T PRK11664 281 IEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQAERAAAQSEPEILHSDLSG 359 (812)
T ss_pred ccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHHHhhCccCCCCceeccchHH
Confidence 99999999988764 335899999999998 69999999998887766666666655444333
Q ss_pred HH
Q psy16633 417 LM 418 (540)
Q Consensus 417 ~~ 418 (540)
++
T Consensus 360 ~~ 361 (812)
T PRK11664 360 LL 361 (812)
T ss_pred HH
Confidence 33
No 60
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=8.9e-38 Score=331.36 Aligned_cols=319 Identities=18% Similarity=0.131 Sum_probs=248.9
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHH
Q psy16633 36 LGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELT 115 (540)
Q Consensus 36 ~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~ 115 (540)
+|. .|+++|..++|.+++|+ ++.+.||+|||++|.+|++...+ .+..++|++||++||.|.++.+..++
T Consensus 100 lg~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al--------~G~~v~VvTptreLA~qdae~~~~l~ 168 (656)
T PRK12898 100 LGQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAAL--------AGLPVHVITVNDYLAERDAELMRPLY 168 (656)
T ss_pred hCC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhh--------cCCeEEEEcCcHHHHHHHHHHHHHHH
Confidence 476 89999999999999999 99999999999999999998763 46789999999999999999999999
Q ss_pred hhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHH-HHHHhcCc------------------------CCccCCcc
Q psy16633 116 MKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARA-LAHLKAKT------------------------LDLKSSLE 170 (540)
Q Consensus 116 ~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l-~~~l~~~~------------------------~~~~~~l~ 170 (540)
... ++++..++|+.+.. .......++|+|+|...| .++|+.+- ......+.
T Consensus 169 ~~l--Glsv~~i~gg~~~~--~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~ 244 (656)
T PRK12898 169 EAL--GLTVGCVVEDQSPD--ERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLH 244 (656)
T ss_pred hhc--CCEEEEEeCCCCHH--HHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccc
Confidence 877 78888898886533 333446889999999876 44443321 11226688
Q ss_pred EEEEcCccccc-c----------C-------CcHHHHHHHHHhC--------------------------------C---
Q psy16633 171 IVIIDEADLVF-S----------F-------GYEDDMKAVLKFL--------------------------------P--- 197 (540)
Q Consensus 171 ~lViDEah~l~-~----------~-------~~~~~l~~i~~~l--------------------------------~--- 197 (540)
+.||||+|.++ | . .....+..+...+ +
T Consensus 245 ~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~ 324 (656)
T PRK12898 245 FAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAW 324 (656)
T ss_pred eeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhc
Confidence 99999999754 1 0 0000000010000 0
Q ss_pred ---------------------cc---------------------------------------------------------
Q psy16633 198 ---------------------KL--------------------------------------------------------- 199 (540)
Q Consensus 198 ---------------------~~--------------------------------------------------------- 199 (540)
+.
T Consensus 325 ~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~ 404 (656)
T PRK12898 325 RGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRF 404 (656)
T ss_pred ccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHH
Confidence 00
Q ss_pred ----cceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcCcccHHHHHHHHHHhc-ccCCcEEEEec
Q psy16633 200 ----YQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLN-LVQGKTIIFVN 274 (540)
Q Consensus 200 ----~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~ll~~~-~~~~k~IIF~~ 274 (540)
.++.+||||.+.....+...+..+++.+....+.. ....+.++.++..+|...+...++.. ..+.++||||+
T Consensus 405 Fr~Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~~---r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~ 481 (656)
T PRK12898 405 FRRYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPSQ---RRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTR 481 (656)
T ss_pred HHhhHHHhcccCcChHHHHHHHHHHCCCeEEeCCCCCcc---ceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 14778999999888888888888887776654432 22344556677888888888887653 23568999999
Q ss_pred ChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccccccccccCccccccccCC
Q psy16633 275 TVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGID 354 (540)
Q Consensus 275 s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD 354 (540)
|+..++.++..|.+.|+++..+||.++ .|+..+..|..+...|+|||| +++||+|
T Consensus 482 t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVATd-----------------------mAgRGtD 536 (656)
T PRK12898 482 SVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGRITVATN-----------------------MAGRGTD 536 (656)
T ss_pred cHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEEcc-----------------------chhcccC
Confidence 999999999999999999999999865 455556667777778999999 9999999
Q ss_pred CC---CcC-----EEEeCCCCCCcccchhccccccCCCCCceEEEEecccc
Q psy16633 355 FQ---FVS-----NVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLRE 397 (540)
Q Consensus 355 ~~---~v~-----~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e 397 (540)
++ +|. +||+||+|.|...|.||+|||||.|.+|.+++|++.+|
T Consensus 537 I~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD 587 (656)
T PRK12898 537 IKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAILSLED 587 (656)
T ss_pred cCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEEechhH
Confidence 99 676 99999999999999999999999999999999999765
No 61
>KOG0349|consensus
Probab=100.00 E-value=7.2e-39 Score=310.51 Aligned_cols=311 Identities=25% Similarity=0.364 Sum_probs=243.6
Q ss_pred EEEEcCcHHHHHHHHHHHHHHHhhc-CCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEE
Q psy16633 94 ALVLSPSKELCNQLHKNIQELTMKC-SRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIV 172 (540)
Q Consensus 94 vlil~Pt~~La~q~~~~l~~l~~~~-~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~l 172 (540)
++|+-|++||++|.+..++++-... .+.++...+.|+.-...|...+..+.+|+|+||+++.+.+..+.+.+ ..+.++
T Consensus 289 avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~l-t~crFl 367 (725)
T KOG0349|consen 289 AVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTL-THCRFL 367 (725)
T ss_pred eeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceee-eeeEEE
Confidence 8999999999999999888876554 23556667788888888888888999999999999999999988887 999999
Q ss_pred EEcCccccccCCcHHHHHHHHHhCCc------ccceeeEeeeccH-HHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEE
Q psy16633 173 IIDEADLVFSFGYEDDMKAVLKFLPK------LYQAILASATLSE-DVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHI 245 (540)
Q Consensus 173 ViDEah~l~~~~~~~~l~~i~~~l~~------~~q~il~SATl~~-~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~ 245 (540)
|+||+|.++..+|.+.|..+...+|. ..|.+++|||+.. ++..+....++-|..+.+...+. .++.+.+...
T Consensus 368 vlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~-vpetvHhvv~ 446 (725)
T KOG0349|consen 368 VLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDL-VPETVHHVVK 446 (725)
T ss_pred EecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccc-cchhhcccee
Confidence 99999999999999999998888874 4799999999863 45566677788888888876653 2344444433
Q ss_pred EcCcc--cHHH----------------------------HHHHHHHh--------cccCCcEEEEecChhhHHHHHHHHH
Q psy16633 246 LAQED--EKAT----------------------------ILYTLLKL--------NLVQGKTIIFVNTVDKCYKLKLYLE 287 (540)
Q Consensus 246 ~~~~~--~k~~----------------------------~l~~ll~~--------~~~~~k~IIF~~s~~~~~~l~~~L~ 287 (540)
.+... ..+. -...+++. .-...++||||.++.+|..|..++.
T Consensus 447 lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~~ 526 (725)
T KOG0349|consen 447 LVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMMN 526 (725)
T ss_pred ecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHHH
Confidence 32210 0011 11111110 1123589999999999999999998
Q ss_pred hCC---CceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEeC
Q psy16633 288 QFK---ISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINF 364 (540)
Q Consensus 288 ~~~---~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~ 364 (540)
+.| +.|..+|++..+.+|.+.++.|.++.++.||||| +++||+|+..+.++||.
T Consensus 527 qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictd-----------------------vaargldi~g~p~~inv 583 (725)
T KOG0349|consen 527 QKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTD-----------------------VAARGLDITGLPFMINV 583 (725)
T ss_pred HcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEeh-----------------------hhhccccccCCceEEEE
Confidence 864 6889999999999999999999999999999999 89999999999999999
Q ss_pred CCCCCcccchhccccccCCCCCceEEEEeccccccccccc-----cchhhhhh----------hhhHHHHHHHHHHhhcc
Q psy16633 365 DFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDG-----TALSFVSL----------REQDLMNDVNEYLMTNL 429 (540)
Q Consensus 365 d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e~~~~~~~-----~~~~~~~~----------~~~~~~~~i~~~~~~~~ 429 (540)
-+|.+...|+||+||+||+.+-|.+|+++........-.+ ......++ .+..++.++|.+++..+
T Consensus 584 tlpd~k~nyvhrigrvgraermglaislvat~~ekvwyh~c~srgr~c~nt~l~e~~gc~iwyne~~llaeve~hln~ti 663 (725)
T KOG0349|consen 584 TLPDDKTNYVHRIGRVGRAERMGLAISLVATVPEKVWYHWCKSRGRSCNNTNLTEVRGCCIWYNEPNLLAEVEDHLNITI 663 (725)
T ss_pred ecCcccchhhhhhhccchhhhcceeEEEeeccchheeehhhhccCCcccCCccccccceEEEeCchhHHHHHHHhhccee
Confidence 9999999999999999999999999999974332221111 11111111 35677999999988754
No 62
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=7.5e-38 Score=321.88 Aligned_cols=299 Identities=21% Similarity=0.207 Sum_probs=210.5
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCccc---
Q psy16633 57 DVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDV--- 133 (540)
Q Consensus 57 d~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~--- 133 (540)
++++.||||||||.+|++|++..+.. ..+.+++|++|+++|+.|+++.+..++.. ....+.+....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~------~~~~~ii~v~P~~~L~~q~~~~l~~~f~~-----~~~~~~~~~~~~~~ 69 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS------QKADRVIIALPTRATINAMYRRAKELFGS-----NLGLLHSSSSFKRI 69 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh------CCCCeEEEEeehHHHHHHHHHHHHHHhCc-----ccEEeeccHHHHHH
Confidence 58999999999999999999987643 35679999999999999999999987532 11211111110
Q ss_pred ---------ccchhh------hhCCCCEEEEChHHHHHHHhcCc----CCc-cCCccEEEEcCccccccCCcHHHHHHHH
Q psy16633 134 ---------SVQEPL------LVERPDIVVATPARALAHLKAKT----LDL-KSSLEIVIIDEADLVFSFGYEDDMKAVL 193 (540)
Q Consensus 134 ---------~~~~~~------l~~~~~Ivv~Tp~~l~~~l~~~~----~~~-~~~l~~lViDEah~l~~~~~~~~l~~i~ 193 (540)
...... .....+|+|+||++++..+..+. ..+ .-..+++||||+|.+.+.++.. +..++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l 148 (358)
T TIGR01587 70 KEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVL 148 (358)
T ss_pred hccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHH
Confidence 000000 01246799999999988776521 111 0134799999999998765444 55555
Q ss_pred HhCC-cccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCe-EEEEEEc--CcccHHHHHHHHHHhcccCCcE
Q psy16633 194 KFLP-KLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQL-AHYHILA--QEDEKATILYTLLKLNLVQGKT 269 (540)
Q Consensus 194 ~~l~-~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l-~~~~~~~--~~~~k~~~l~~ll~~~~~~~k~ 269 (540)
..++ ...|+++||||+|+.+..+.......+......... .... .+.+..+ ....+...+..+++....++++
T Consensus 149 ~~l~~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 225 (358)
T TIGR01587 149 EVLKDNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKE---ERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKI 225 (358)
T ss_pred HHHHHcCCCEEEEecCchHHHHHHHhcCCCcccccCCCCcc---ccccccccceeeccccccCHHHHHHHHHHhhCCCeE
Confidence 5554 468999999999987776665543332211111110 0011 1222111 2234555666666544456899
Q ss_pred EEEecChhhHHHHHHHHHhCCC--ceEEeCCCCCHHHHHH----HHHHHhcCCccEEEeCCCCccCCccccccccccccc
Q psy16633 270 IIFVNTVDKCYKLKLYLEQFKI--STCVLNSELPAKARCH----AVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKR 343 (540)
Q Consensus 270 IIF~~s~~~~~~l~~~L~~~~~--~~~~l~~~l~~~~r~~----i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~ 343 (540)
||||++++.|+.++..|.+.+. .+..+||++++.+|.. +++.|.+|..++||||+
T Consensus 226 lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~------------------- 286 (358)
T TIGR01587 226 AIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQ------------------- 286 (358)
T ss_pred EEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECc-------------------
Confidence 9999999999999999988766 5899999999999976 48899999999999999
Q ss_pred CccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCc----eEEEEeccc
Q psy16633 344 DKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQG----TALSFVSLR 396 (540)
Q Consensus 344 ~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g----~~i~~~~~~ 396 (540)
++++|+|++ +++||+++.| .++|+||+||+||.|+.+ ..+++....
T Consensus 287 ----~~~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 287 ----VIEASLDIS-ADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred ----chhceeccC-CCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecC
Confidence 999999995 8899998876 689999999999988642 555555433
No 63
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=5.6e-37 Score=349.27 Aligned_cols=294 Identities=17% Similarity=0.253 Sum_probs=220.4
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHH
Q psy16633 27 CIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQ 106 (540)
Q Consensus 27 ~~i~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q 106 (540)
.++.+.+.+.....|+++|+.++|.++.|+|++++||||||||. |.+|++..+.. .+.+++|++||++||.|
T Consensus 65 ~~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~-------~g~~vLIL~PTreLa~Q 136 (1171)
T TIGR01054 65 KEFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK-------KGKRCYIILPTTLLVIQ 136 (1171)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh-------cCCeEEEEeCHHHHHHH
Confidence 34555566543347999999999999999999999999999997 77777766532 47899999999999999
Q ss_pred HHHHHHHHHhhcCCCce-EEEeecCcccccchh---hh-hCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccc
Q psy16633 107 LHKNIQELTMKCSRDVK-CVDISEQVDVSVQEP---LL-VERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVF 181 (540)
Q Consensus 107 ~~~~l~~l~~~~~~~i~-~~~~~~~~~~~~~~~---~l-~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~ 181 (540)
+++.+..++...+..+. +..++|+.+...+.. .+ .+.++|+|+||++|.+++..-. ..++++|+||||.|+
T Consensus 137 i~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~----~~~~~iVvDEaD~~L 212 (1171)
T TIGR01054 137 VAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG----PKFDFIFVDDVDALL 212 (1171)
T ss_pred HHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc----CCCCEEEEeChHhhh
Confidence 99999999887642222 234567665544322 22 3469999999999988876521 279999999999999
Q ss_pred c-----------CCcHHH-HHHHH----------------------HhCCcccc--eeeEeee-ccHHHHHHHHHhcCCC
Q psy16633 182 S-----------FGYEDD-MKAVL----------------------KFLPKLYQ--AILASAT-LSEDVLSLKHLILRNP 224 (540)
Q Consensus 182 ~-----------~~~~~~-l~~i~----------------------~~l~~~~q--~il~SAT-l~~~~~~~~~~~l~~p 224 (540)
+ .||.++ +..++ +.+|+..| ++++||| .|..+.. .++.++
T Consensus 213 ~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~l 289 (1171)
T TIGR01054 213 KASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFREL 289 (1171)
T ss_pred hccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcccc
Confidence 8 567653 44432 23455555 5678999 4554332 334555
Q ss_pred eEEEecCCCCCCCCCeEEEEEEcCcccHHHHHHHHHHhcccCCcEEEEecCh---hhHHHHHHHHHhCCCceEEeCCCCC
Q psy16633 225 VILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTIIFVNTV---DKCYKLKLYLEQFKISTCVLNSELP 301 (540)
Q Consensus 225 ~~i~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~ll~~~~~~~k~IIF~~s~---~~~~~l~~~L~~~~~~~~~l~~~l~ 301 (540)
..+.+.... ....++.+.++.+.. +...+..+++.. +.++||||+++ +.|+.++..|.+.|+++..+||+++
T Consensus 290 l~~~v~~~~-~~~r~I~~~~~~~~~--~~~~L~~ll~~l--~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~ 364 (1171)
T TIGR01054 290 LGFEVGGGS-DTLRNVVDVYVEDED--LKETLLEIVKKL--GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP 364 (1171)
T ss_pred cceEecCcc-ccccceEEEEEeccc--HHHHHHHHHHHc--CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC
Confidence 555554433 334567777765443 234455666543 46899999999 9999999999999999999999997
Q ss_pred HHHHHHHHHHHhcCCccEEEeC----CCCccCCcccccccccccccCccccccccCCCCC-cCEEEeCCCC
Q psy16633 302 AKARCHAVYQFNQGLYDVIIAS----DEKALETPQINSTNNRKRKRDKESGVSRGIDFQF-VSNVINFDFP 367 (540)
Q Consensus 302 ~~~r~~i~~~F~~g~~~iLIaT----~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~-v~~Vi~~d~p 367 (540)
+ .+++.|++|+++||||| | +++||||+|+ |++|||||+|
T Consensus 365 ~----~~l~~Fr~G~~~vLVata~~td-----------------------v~aRGIDip~~V~~vI~~~~P 408 (1171)
T TIGR01054 365 K----EDYEKFAEGEIDVLIGVASYYG-----------------------TLVRGLDLPERVRYAVFLGVP 408 (1171)
T ss_pred H----HHHHHHHcCCCCEEEEeccccC-----------------------cccccCCCCccccEEEEECCC
Confidence 3 68999999999999995 7 8999999999 8999999887
No 64
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=4.4e-37 Score=327.49 Aligned_cols=309 Identities=17% Similarity=0.154 Sum_probs=220.0
Q ss_pred CCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhh
Q psy16633 38 WLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMK 117 (540)
Q Consensus 38 ~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~ 117 (540)
...|+++|++|++.++.+++.++.+|||+|||.++.. +...++. ....++||+|||++|+.|+.+.+.+++..
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~-l~~~~~~------~~~~~vLilvpt~eL~~Q~~~~l~~~~~~ 184 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYL-LSRYYLE------NYEGKVLIIVPTTSLVTQMIDDFVDYRLF 184 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHH-HHHHHHh------cCCCeEEEEECcHHHHHHHHHHHHHhccc
Confidence 3589999999999999999999999999999986543 2222222 23448999999999999999999987643
Q ss_pred cCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCCcHHHHHHHHHhCC
Q psy16633 118 CSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLP 197 (540)
Q Consensus 118 ~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~l~ 197 (540)
. ...+..+.++.... ...+|+|+||+++.+.... .+ ..+++||+||||++.+. .+..++..++
T Consensus 185 ~--~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~~---~~-~~~~~iIvDEaH~~~~~----~~~~il~~~~ 247 (501)
T PHA02558 185 P--REAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPKE---WF-DQFGMVIVDECHLFTGK----SLTSIITKLD 247 (501)
T ss_pred c--ccceeEEecCcccC-------CCCCEEEeeHHHHhhchhh---hc-cccCEEEEEchhcccch----hHHHHHHhhh
Confidence 2 23333444443221 3578999999998764422 23 78999999999998764 3556677777
Q ss_pred cccceeeEeeeccHHHHHHH-HHhcCCCeEEEecCCCCCC---CCCeEEEE-----------------------EEcCcc
Q psy16633 198 KLYQAILASATLSEDVLSLK-HLILRNPVILKLEEPAIAP---VSQLAHYH-----------------------ILAQED 250 (540)
Q Consensus 198 ~~~q~il~SATl~~~~~~~~-~~~l~~p~~i~~~~~~~~~---~~~l~~~~-----------------------~~~~~~ 250 (540)
+..+++++|||+++...... ...+-.|........+... ...+.... ...+..
T Consensus 248 ~~~~~lGLTATp~~~~~~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 327 (501)
T PHA02558 248 NCKFKFGLTGSLRDGKANILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHT 327 (501)
T ss_pred ccceEEEEeccCCCccccHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccH
Confidence 77789999999975332111 1111122222211100000 00000000 011122
Q ss_pred cHHHHHHHHHHh-cccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeC-CCCcc
Q psy16633 251 EKATILYTLLKL-NLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIAS-DEKAL 328 (540)
Q Consensus 251 ~k~~~l~~ll~~-~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT-~~~~~ 328 (540)
.+...+..+... ...+++++|||+++++++.++..|++.|.++..+||++++++|..+++.|++|...+|||| +
T Consensus 328 ~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~---- 403 (501)
T PHA02558 328 KRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYG---- 403 (501)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcc----
Confidence 233333333322 1235689999999999999999999999999999999999999999999999999999998 7
Q ss_pred CCcccccccccccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEEe
Q psy16633 329 ETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFV 393 (540)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~ 393 (540)
.+++|+|+|++++||+++++.|...|+||+||++|.+..+....++
T Consensus 404 -------------------~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~ 449 (501)
T PHA02558 404 -------------------VFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVW 449 (501)
T ss_pred -------------------eeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEE
Confidence 8999999999999999999999999999999999987655444444
No 65
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.4e-35 Score=295.55 Aligned_cols=324 Identities=23% Similarity=0.252 Sum_probs=240.3
Q ss_pred CCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhc
Q psy16633 39 LEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKC 118 (540)
Q Consensus 39 ~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~ 118 (540)
-+|+.+|......++.+ ++||..|||-|||+.+++-+...+.+ ..+ ++|+++||+.|+.|.++.+.+.+.-.
T Consensus 14 ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~------~~~-kvlfLAPTKPLV~Qh~~~~~~v~~ip 85 (542)
T COG1111 14 IEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRW------FGG-KVLFLAPTKPLVLQHAEFCRKVTGIP 85 (542)
T ss_pred ccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHh------cCC-eEEEecCCchHHHHHHHHHHHHhCCC
Confidence 47899999888888775 99999999999999988888877755 234 99999999999999999999987533
Q ss_pred CCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCCcHHHHHHHHHhCCc
Q psy16633 119 SRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPK 198 (540)
Q Consensus 119 ~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~ 198 (540)
.-.+..++|....... .......+|+|+||+.+.+-+..+.+++ ..+.++||||||+-...--...+..-.-...+
T Consensus 86 --~~~i~~ltGev~p~~R-~~~w~~~kVfvaTPQvveNDl~~Grid~-~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k 161 (542)
T COG1111 86 --EDEIAALTGEVRPEER-EELWAKKKVFVATPQVVENDLKAGRIDL-DDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAK 161 (542)
T ss_pred --hhheeeecCCCChHHH-HHHHhhCCEEEeccHHHHhHHhcCccCh-HHceEEEechhhhccCcchHHHHHHHHHHhcc
Confidence 4556788887765543 3444678999999999999999999998 99999999999987764433344443334456
Q ss_pred ccceeeEeeeccHHHHHHHHH---hcCCCeEEEecCCCC-CC-CCCeEEEEEEc--------------------------
Q psy16633 199 LYQAILASATLSEDVLSLKHL---ILRNPVILKLEEPAI-AP-VSQLAHYHILA-------------------------- 247 (540)
Q Consensus 199 ~~q~il~SATl~~~~~~~~~~---~l~~p~~i~~~~~~~-~~-~~~l~~~~~~~-------------------------- 247 (540)
++.++++|||+..+.+....- ..-.-+.++.+.+.. .. .......++.+
T Consensus 162 ~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~ 241 (542)
T COG1111 162 NPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKE 241 (542)
T ss_pred CceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778999999996654433221 111111111111000 00 00000000000
Q ss_pred --------------------------------------------------------------------------------
Q psy16633 248 -------------------------------------------------------------------------------- 247 (540)
Q Consensus 248 -------------------------------------------------------------------------------- 247 (540)
T Consensus 242 ~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a 321 (542)
T COG1111 242 LGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAA 321 (542)
T ss_pred cCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHH
Confidence
Q ss_pred -----------------------CcccHHHHHHHHHHhcc---cCCcEEEEecChhhHHHHHHHHHhCCCceE-Ee----
Q psy16633 248 -----------------------QEDEKATILYTLLKLNL---VQGKTIIFVNTVDKCYKLKLYLEQFKISTC-VL---- 296 (540)
Q Consensus 248 -----------------------~~~~k~~~l~~ll~~~~---~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~-~l---- 296 (540)
-+..|...+..+++... ...++|||++.+++|+.+..+|.+.++.+. .+
T Consensus 322 ~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa 401 (542)
T COG1111 322 KSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQA 401 (542)
T ss_pred HHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeecc
Confidence 01123333444444322 234899999999999999999999988774 22
Q ss_pred ----CCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEeCCCCCCccc
Q psy16633 297 ----NSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQC 372 (540)
Q Consensus 297 ----~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~ 372 (540)
..||+|.++.+++++|++|+++|||||+ +.++|+|+|+++.||.|++-.|...
T Consensus 402 ~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTS-----------------------VgEEGLDIp~vDlVifYEpvpSeIR 458 (542)
T COG1111 402 SREGDKGMSQKEQKEIIDQFRKGEYNVLVATS-----------------------VGEEGLDIPEVDLVIFYEPVPSEIR 458 (542)
T ss_pred ccccccccCHHHHHHHHHHHhcCCceEEEEcc-----------------------cccccCCCCcccEEEEecCCcHHHH
Confidence 3579999999999999999999999999 7889999999999999999999999
Q ss_pred chhccccccCCCCCceEEEEeccccc
Q psy16633 373 YIHRAGRTARGKNQGTALSFVSLREQ 398 (540)
Q Consensus 373 yiqr~GRagR~g~~g~~i~~~~~~e~ 398 (540)
++||.|||||. ++|.++++++....
T Consensus 459 ~IQR~GRTGR~-r~Grv~vLvt~gtr 483 (542)
T COG1111 459 SIQRKGRTGRK-RKGRVVVLVTEGTR 483 (542)
T ss_pred HHHhhCccccC-CCCeEEEEEecCch
Confidence 99999999997 88999999987643
No 66
>KOG0352|consensus
Probab=100.00 E-value=1.3e-37 Score=301.57 Aligned_cols=330 Identities=22% Similarity=0.308 Sum_probs=249.4
Q ss_pred HHHHHHHHHC-CCCCC-hHHHHHHHHHHhcC-CcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHH
Q psy16633 27 CIPLQAIAKL-GWLEP-TLIQERAIPLILQN-KDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKEL 103 (540)
Q Consensus 27 ~~i~~~l~~~-g~~~p-t~~Q~~ai~~il~g-kd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~L 103 (540)
.++.++|+++ |+..+ ++.|++|+..+..+ +|+.|++|||+||+++|.+|.|.. +..+||+.|..+|
T Consensus 5 r~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~-----------~gITIV~SPLiAL 73 (641)
T KOG0352|consen 5 RKVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH-----------GGITIVISPLIAL 73 (641)
T ss_pred HHHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh-----------CCeEEEehHHHHH
Confidence 4677888884 88765 69999999999986 589999999999999999998843 4489999999999
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhh------CCCCEEEEChHHHHHHHhcC---cCCccCCccEEEE
Q psy16633 104 CNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLV------ERPDIVVATPARALAHLKAK---TLDLKSSLEIVII 174 (540)
Q Consensus 104 a~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~------~~~~Ivv~Tp~~l~~~l~~~---~~~~~~~l~~lVi 174 (540)
...+.+.+..+-. .+..+.+..+..+..+.+. ....+++.||+....-.... .+.-...+.++|+
T Consensus 74 IkDQiDHL~~LKV------p~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vV 147 (641)
T KOG0352|consen 74 IKDQIDHLKRLKV------PCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVV 147 (641)
T ss_pred HHHHHHHHHhcCC------chhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEe
Confidence 9998888887743 3344444433333333322 34569999998743221111 1111256889999
Q ss_pred cCccccccCC--cHHHHHHH---HHhCCcccceeeEeeeccHHHHH--HHHHhcCCCeEEEecCCCCCCCCCeEEEEEE-
Q psy16633 175 DEADLVFSFG--YEDDMKAV---LKFLPKLYQAILASATLSEDVLS--LKHLILRNPVILKLEEPAIAPVSQLAHYHIL- 246 (540)
Q Consensus 175 DEah~l~~~~--~~~~l~~i---~~~l~~~~q~il~SATl~~~~~~--~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~- 246 (540)
||||++.+|| |+.+...+ .+.++ ...++.++||.+..+++ ...+.+++|+-+.-..... .++ .|.+.
T Consensus 148 DEAHCVSQWGHDFRPDYL~LG~LRS~~~-~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR---~NL-FYD~~~ 222 (641)
T KOG0352|consen 148 DEAHCVSQWGHDFRPDYLTLGSLRSVCP-GVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFR---DNL-FYDNHM 222 (641)
T ss_pred chhhhHhhhccccCcchhhhhhHHhhCC-CCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchh---hhh-hHHHHH
Confidence 9999999998 55665554 33343 56899999999998876 4456788888654332111 011 01100
Q ss_pred -cCcccHHHHHHHHHHhcc------------cCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHh
Q psy16633 247 -AQEDEKATILYTLLKLNL------------VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFN 313 (540)
Q Consensus 247 -~~~~~k~~~l~~ll~~~~------------~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~ 313 (540)
..-.+-+..|.++....+ ..|-.||||.|++.|++++..|...|+++..+|+|+...+|..+.+.|.
T Consensus 223 K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM 302 (641)
T KOG0352|consen 223 KSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWM 302 (641)
T ss_pred HHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHh
Confidence 011223333444332211 2345899999999999999999999999999999999999999999999
Q ss_pred cCCccEEEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEEe
Q psy16633 314 QGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFV 393 (540)
Q Consensus 314 ~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~ 393 (540)
+|++.||+||. .+++|+|-|+|++|||||+|.|...|.|..|||||.|....|-+++
T Consensus 303 ~~~~PvI~AT~-----------------------SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYY 359 (641)
T KOG0352|consen 303 NNEIPVIAATV-----------------------SFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYY 359 (641)
T ss_pred cCCCCEEEEEe-----------------------ccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeee
Confidence 99999999999 9999999999999999999999999999999999999999999999
Q ss_pred cccccccc
Q psy16633 394 SLREQDLM 401 (540)
Q Consensus 394 ~~~e~~~~ 401 (540)
+.+|...+
T Consensus 360 sR~D~~~i 367 (641)
T KOG0352|consen 360 SRQDKNAL 367 (641)
T ss_pred cccchHHH
Confidence 98887653
No 67
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=1e-36 Score=305.21 Aligned_cols=336 Identities=22% Similarity=0.241 Sum_probs=262.3
Q ss_pred cCCCCHHHHHHHHHCCCCCChHHHHHHHHH-HhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCc
Q psy16633 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPL-ILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPS 100 (540)
Q Consensus 22 ~~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~-il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt 100 (540)
.+.+++.+.+.|+..|+..++|+|..|+.. +++|+|.+|.++|+||||++.-++=+..++. .+.+.|++||.
T Consensus 198 eLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~-------~g~KmlfLvPL 270 (830)
T COG1202 198 ELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS-------GGKKMLFLVPL 270 (830)
T ss_pred ccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh-------CCCeEEEEehh
Confidence 678899999999999999999999999976 5689999999999999999999888888865 68899999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccch----hhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcC
Q psy16633 101 KELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQE----PLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDE 176 (540)
Q Consensus 101 ~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~----~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDE 176 (540)
.+||+|.++.|+.-....+ +.+..-.|...+.... ......+||+|+|++-+-.+++.+ -.+ .+++.+||||
T Consensus 271 VALANQKy~dF~~rYs~Lg--lkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~l-gdiGtVVIDE 346 (830)
T COG1202 271 VALANQKYEDFKERYSKLG--LKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDL-GDIGTVVIDE 346 (830)
T ss_pred HHhhcchHHHHHHHhhccc--ceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-Ccc-cccceEEeee
Confidence 9999999999998666553 3333333332222221 222346899999999988888877 333 8999999999
Q ss_pred ccccccCCcHHHHHHHHH---hCCcccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeE-EEEEEcCcccH
Q psy16633 177 ADLVFSFGYEDDMKAVLK---FLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLA-HYHILAQEDEK 252 (540)
Q Consensus 177 ah~l~~~~~~~~l~~i~~---~l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~-~~~~~~~~~~k 252 (540)
+|.+-+...+..+..++. ++-+..|+|.+|||..+..+ +++.+..+++.. +... ..+. |..+.-++.+|
T Consensus 347 iHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp~e-lA~~l~a~lV~y--~~RP----VplErHlvf~~~e~eK 419 (830)
T COG1202 347 IHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNPEE-LAKKLGAKLVLY--DERP----VPLERHLVFARNESEK 419 (830)
T ss_pred eeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCChHH-HHHHhCCeeEee--cCCC----CChhHeeeeecCchHH
Confidence 998877655544444433 33347899999999987554 444443334333 2211 1233 33444458899
Q ss_pred HHHHHHHHHhc-------ccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCC
Q psy16633 253 ATILYTLLKLN-------LVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE 325 (540)
Q Consensus 253 ~~~l~~ll~~~-------~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~ 325 (540)
..++..+.+.. .-+|++|||++|+..|..++.+|...|+++..+|++|+..+|..+...|..+.+.++|+|.
T Consensus 420 ~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTA- 498 (830)
T COG1202 420 WDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTA- 498 (830)
T ss_pred HHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehh-
Confidence 99988887642 3467999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCcccccccccccccCccccccccCCCCCcCEEEe---CCC-CCCcccchhccccccCCCC--CceEEEEeccccc
Q psy16633 326 KALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVIN---FDF-PLDIQCYIHRAGRTARGKN--QGTALSFVSLREQ 398 (540)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~---~d~-p~s~~~yiqr~GRagR~g~--~g~~i~~~~~~e~ 398 (540)
+++-|+|||.-.+|+. ++. +.|+.+|.|+.|||||-+- .|.+++++.+...
T Consensus 499 ----------------------AL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~~ 555 (830)
T COG1202 499 ----------------------ALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGKK 555 (830)
T ss_pred ----------------------hhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCChh
Confidence 9999999997665542 222 3589999999999999874 5888888876543
No 68
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=3.6e-36 Score=325.64 Aligned_cols=321 Identities=16% Similarity=0.178 Sum_probs=237.7
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHH
Q psy16633 36 LGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELT 115 (540)
Q Consensus 36 ~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~ 115 (540)
+|. .|+++|..+++.+++|+ ++.+.||+|||++|++|++...+ .|..++|++||++||.|.++.+..+.
T Consensus 75 ~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al--------~G~~v~VvTpt~~LA~qd~e~~~~l~ 143 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNAL--------EGKGVHLITVNDYLAKRDAEEMGQVY 143 (790)
T ss_pred hCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHH--------cCCCeEEEeCCHHHHHHHHHHHHHHH
Confidence 477 89999999999998887 99999999999999999986553 47789999999999999999999999
Q ss_pred hhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHH-HHHHhcCc-----CCccCCccEEEEcCccccc-cC-----
Q psy16633 116 MKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARA-LAHLKAKT-----LDLKSSLEIVIIDEADLVF-SF----- 183 (540)
Q Consensus 116 ~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l-~~~l~~~~-----~~~~~~l~~lViDEah~l~-~~----- 183 (540)
..+ ++++..+.|+.+...++.. ...++|+|+||+++ .+++...- ....+.+.++|+||||.|+ |.
T Consensus 144 ~~l--Gl~v~~i~g~~~~~~~r~~-~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpl 220 (790)
T PRK09200 144 EFL--GLTVGLNFSDIDDASEKKA-IYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPL 220 (790)
T ss_pred hhc--CCeEEEEeCCCCcHHHHHH-hcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCce
Confidence 887 7888888888773333333 35689999999998 55554321 1233789999999999865 10
Q ss_pred ----------CcHHHHHHHHHhCCcc------------------------------------------------------
Q psy16633 184 ----------GYEDDMKAVLKFLPKL------------------------------------------------------ 199 (540)
Q Consensus 184 ----------~~~~~l~~i~~~l~~~------------------------------------------------------ 199 (540)
.....+..+...+...
T Consensus 221 iisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~ 300 (790)
T PRK09200 221 IISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFK 300 (790)
T ss_pred eeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhh
Confidence 0111111222211100
Q ss_pred ---------------------------------------------------------------cceeeEeeeccHHHHHH
Q psy16633 200 ---------------------------------------------------------------YQAILASATLSEDVLSL 216 (540)
Q Consensus 200 ---------------------------------------------------------------~q~il~SATl~~~~~~~ 216 (540)
..+.+||.|....-..+
T Consensus 301 ~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~ 380 (790)
T PRK09200 301 RDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEF 380 (790)
T ss_pred cCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHH
Confidence 13445666654444444
Q ss_pred HHHhcCCCeEEEecCCCCCCCCCeEEEEEEcCcccHHHHHHHHHHh-cccCCcEEEEecChhhHHHHHHHHHhCCCceEE
Q psy16633 217 KHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKL-NLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCV 295 (540)
Q Consensus 217 ~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~ll~~-~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~ 295 (540)
...+--+ ++.+.... +....-..-.+.++..+|...+...+.. ...+.++||||+|+..++.++..|.+.|+++..
T Consensus 381 ~~~Y~l~--v~~IPt~k-p~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~ 457 (790)
T PRK09200 381 FEVYNME--VVQIPTNR-PIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNL 457 (790)
T ss_pred HHHhCCc--EEECCCCC-CcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEE
Confidence 3333222 22222111 1100001123445667788877777654 345679999999999999999999999999999
Q ss_pred eCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccccccccccCccccccccCCC---CCcC-----EEEeCCCC
Q psy16633 296 LNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDF---QFVS-----NVINFDFP 367 (540)
Q Consensus 296 l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~---~~v~-----~Vi~~d~p 367 (540)
+||.+.+.++..+...+..| .|+|||| +++||+|+ ++|. +||+||+|
T Consensus 458 L~~~~~~~e~~~i~~ag~~g--~VlIATd-----------------------mAgRG~DI~l~~~V~~~GGL~VI~~d~p 512 (790)
T PRK09200 458 LNAKNAAKEAQIIAEAGQKG--AVTVATN-----------------------MAGRGTDIKLGEGVHELGGLAVIGTERM 512 (790)
T ss_pred ecCCccHHHHHHHHHcCCCC--eEEEEcc-----------------------chhcCcCCCcccccccccCcEEEeccCC
Confidence 99999988888777777665 7999999 99999999 6998 99999999
Q ss_pred CCcccchhccccccCCCCCceEEEEeccccc
Q psy16633 368 LDIQCYIHRAGRTARGKNQGTALSFVSLREQ 398 (540)
Q Consensus 368 ~s~~~yiqr~GRagR~g~~g~~i~~~~~~e~ 398 (540)
.|.+.|.||+|||||.|.+|.+++|++..|.
T Consensus 513 ~s~r~y~qr~GRtGR~G~~G~s~~~is~eD~ 543 (790)
T PRK09200 513 ESRRVDLQLRGRSGRQGDPGSSQFFISLEDD 543 (790)
T ss_pred CCHHHHHHhhccccCCCCCeeEEEEEcchHH
Confidence 9999999999999999999999999987653
No 69
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=9.6e-36 Score=329.27 Aligned_cols=340 Identities=21% Similarity=0.234 Sum_probs=268.5
Q ss_pred cCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcH
Q psy16633 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSK 101 (540)
Q Consensus 22 ~~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~ 101 (540)
+...+..+..++.+.|...|.++|.+|+..+.+|+|++|.++||||||.+|++||++.+++. +..++|++.||+
T Consensus 52 ~~~~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~------~~a~AL~lYPtn 125 (851)
T COG1205 52 PELRDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRD------PSARALLLYPTN 125 (851)
T ss_pred hhhhhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhC------cCccEEEEechh
Confidence 34456778999999999999999999999999999999999999999999999999999873 445999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcC---cCCccCCccEEEEcCcc
Q psy16633 102 ELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAK---TLDLKSSLEIVIIDEAD 178 (540)
Q Consensus 102 ~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~---~~~~~~~l~~lViDEah 178 (540)
+|++.+.+.+.++....+..+.....+|+...........+.|+|+++||.+|..++-.. ...+++++++||+||+|
T Consensus 126 ALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElH 205 (851)
T COG1205 126 ALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELH 205 (851)
T ss_pred hhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecce
Confidence 999999999999999987778989999998877777788899999999999998855442 23344889999999999
Q ss_pred ccccCCcHHHHHHHHHh-------CCcccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcC---
Q psy16633 179 LVFSFGYEDDMKAVLKF-------LPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQ--- 248 (540)
Q Consensus 179 ~l~~~~~~~~l~~i~~~-------l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~--- 248 (540)
.. ...|+.++..+++. .+...|+|++|||+.+..+........+-... +.+... ......+....+
T Consensus 206 tY-rGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~~-v~~~g~--~~~~~~~~~~~p~~~ 281 (851)
T COG1205 206 TY-RGVQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFGRDFEVP-VDEDGS--PRGLRYFVRREPPIR 281 (851)
T ss_pred ec-cccchhHHHHHHHHHHHHHhccCCCceEEEEeccccChHHHHHHhcCCcceee-ccCCCC--CCCceEEEEeCCcch
Confidence 44 43466655555444 34578999999999887766665554443332 333322 222333333333
Q ss_pred ------cccHHHHHHHHHHhc-ccCCcEEEEecChhhHHHHH----HHHHhCC----CceEEeCCCCCHHHHHHHHHHHh
Q psy16633 249 ------EDEKATILYTLLKLN-LVQGKTIIFVNTVDKCYKLK----LYLEQFK----ISTCVLNSELPAKARCHAVYQFN 313 (540)
Q Consensus 249 ------~~~k~~~l~~ll~~~-~~~~k~IIF~~s~~~~~~l~----~~L~~~~----~~~~~l~~~l~~~~r~~i~~~F~ 313 (540)
..++...+..+.... ...-++|+|+.++..++.+. ..+...+ ..+..++++|+..+|..+...|+
T Consensus 282 ~~~~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~ 361 (851)
T COG1205 282 ELAESIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFK 361 (851)
T ss_pred hhhhhcccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHh
Confidence 123333333333322 23459999999999999986 3333334 56889999999999999999999
Q ss_pred cCCccEEEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEeCCCCC-CcccchhccccccCCCCCceEEEE
Q psy16633 314 QGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPL-DIQCYIHRAGRTARGKNQGTALSF 392 (540)
Q Consensus 314 ~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~-s~~~yiqr~GRagR~g~~g~~i~~ 392 (540)
.|+..++++|+ +++-|+|+.+++.||..+.|. +..+++||.||+||.++.+..+.+
T Consensus 362 ~g~~~~~~st~-----------------------AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v 418 (851)
T COG1205 362 EGELLGVIATN-----------------------ALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVV 418 (851)
T ss_pred cCCccEEecch-----------------------hhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEE
Confidence 99999999999 999999999999999999999 899999999999999966666665
Q ss_pred ec
Q psy16633 393 VS 394 (540)
Q Consensus 393 ~~ 394 (540)
..
T Consensus 419 ~~ 420 (851)
T COG1205 419 LR 420 (851)
T ss_pred eC
Confidence 54
No 70
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=5.8e-36 Score=326.64 Aligned_cols=332 Identities=19% Similarity=0.213 Sum_probs=250.8
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHhc-CCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHH
Q psy16633 25 LFCIPLQAIAKLGWLEPTLIQERAIPLILQ-NKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKEL 103 (540)
Q Consensus 25 L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~-gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~L 103 (540)
+++++.+.++..|+.+..+-|+.++...+- ++|++|++|||||||+.+++.+++.+.+ .+.+++|+||+++|
T Consensus 16 ~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~-------~~~k~vYivPlkAL 88 (766)
T COG1204 16 LDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLE-------GGGKVVYIVPLKAL 88 (766)
T ss_pred ccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHh-------cCCcEEEEeChHHH
Confidence 688899999999999999988888866655 5999999999999999999999999865 37899999999999
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccC
Q psy16633 104 CNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSF 183 (540)
Q Consensus 104 a~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~ 183 (540)
|.|.++.++.+- .. ++++...+|+.+.... ...+++|+|+||+++-..+++... +...+++|||||+|.+.+.
T Consensus 89 a~Ek~~~~~~~~-~~--GirV~~~TgD~~~~~~---~l~~~~ViVtT~EK~Dsl~R~~~~-~~~~V~lvViDEiH~l~d~ 161 (766)
T COG1204 89 AEEKYEEFSRLE-EL--GIRVGISTGDYDLDDE---RLARYDVIVTTPEKLDSLTRKRPS-WIEEVDLVVIDEIHLLGDR 161 (766)
T ss_pred HHHHHHHhhhHH-hc--CCEEEEecCCcccchh---hhccCCEEEEchHHhhHhhhcCcc-hhhcccEEEEeeeeecCCc
Confidence 999999999433 33 7999999998764432 125789999999999888887665 4489999999999988887
Q ss_pred CcHHHHHHHHHhCCc---ccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcCcc-------cHH
Q psy16633 184 GYEDDMKAVLKFLPK---LYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQED-------EKA 253 (540)
Q Consensus 184 ~~~~~l~~i~~~l~~---~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~~-------~k~ 253 (540)
..+..++.+....+. .+|++.+|||+|+..+--.++.. ++.................+........ ...
T Consensus 162 ~RG~~lE~iv~r~~~~~~~~rivgLSATlpN~~evA~wL~a-~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~ 240 (766)
T COG1204 162 TRGPVLESIVARMRRLNELIRIVGLSATLPNAEEVADWLNA-KLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDN 240 (766)
T ss_pred ccCceehhHHHHHHhhCcceEEEEEeeecCCHHHHHHHhCC-cccccCCCCcccccCCccceEEEEecCccccccccchH
Confidence 777777777766553 37999999999985543333222 2221111100000111112222222211 223
Q ss_pred HHHHHHHHhcccCCcEEEEecChhhHHHHHHHHHhC-------------------------------------CCceEEe
Q psy16633 254 TILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQF-------------------------------------KISTCVL 296 (540)
Q Consensus 254 ~~l~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~-------------------------------------~~~~~~l 296 (540)
..+..++......+++||||+|+..+...+..|... -.+++++
T Consensus 241 ~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafH 320 (766)
T COG1204 241 LALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFH 320 (766)
T ss_pred HHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCcccc
Confidence 344444455556789999999999999998888731 0156789
Q ss_pred CCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEe----CC-----CC
Q psy16633 297 NSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVIN----FD-----FP 367 (540)
Q Consensus 297 ~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~----~d-----~p 367 (540)
|++|+...|..+.+.|+.|.++||+||+ +++.|+|+|.-.+||- || .+
T Consensus 321 hAGL~~~~R~~vE~~Fr~g~ikVlv~Tp-----------------------TLA~GVNLPA~~VIIk~~~~y~~~~g~~~ 377 (766)
T COG1204 321 HAGLPREDRQLVEDAFRKGKIKVLVSTP-----------------------TLAAGVNLPARTVIIKDTRRYDPKGGIVD 377 (766)
T ss_pred ccCCCHHHHHHHHHHHhcCCceEEEech-----------------------HHhhhcCCcceEEEEeeeEEEcCCCCeEE
Confidence 9999999999999999999999999999 9999999997666652 66 45
Q ss_pred CCcccchhccccccCCCC--CceEEEEec
Q psy16633 368 LDIQCYIHRAGRTARGKN--QGTALSFVS 394 (540)
Q Consensus 368 ~s~~~yiqr~GRagR~g~--~g~~i~~~~ 394 (540)
.+.-+|+|+.|||||-|- .|.++.+..
T Consensus 378 i~~~dv~QM~GRAGRPg~d~~G~~~i~~~ 406 (766)
T COG1204 378 IPVLDVLQMAGRAGRPGYDDYGEAIILAT 406 (766)
T ss_pred CchhhHhhccCcCCCCCcCCCCcEEEEec
Confidence 678999999999999885 466777763
No 71
>KOG0351|consensus
Probab=100.00 E-value=4.1e-36 Score=329.73 Aligned_cols=328 Identities=22% Similarity=0.244 Sum_probs=254.5
Q ss_pred HHHHHH-HHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHH
Q psy16633 28 IPLQAI-AKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQ 106 (540)
Q Consensus 28 ~i~~~l-~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q 106 (540)
+....+ ..+|...+++-|.+||..++.|+|++|.+|||.||+++|.+|++- .++.+|||.|..+|++.
T Consensus 251 ~~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l-----------~~gitvVISPL~SLm~D 319 (941)
T KOG0351|consen 251 ELELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALL-----------LGGVTVVISPLISLMQD 319 (941)
T ss_pred HHHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccc-----------cCCceEEeccHHHHHHH
Confidence 344444 447999999999999999999999999999999999999999762 34589999999999987
Q ss_pred HHHHHHHHHhhcCCCceEEEeecCcccccch----hhhhC--CCCEEEEChHHHHHHHh--cCcCCc--cCCccEEEEcC
Q psy16633 107 LHKNIQELTMKCSRDVKCVDISEQVDVSVQE----PLLVE--RPDIVVATPARALAHLK--AKTLDL--KSSLEIVIIDE 176 (540)
Q Consensus 107 ~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~----~~l~~--~~~Ivv~Tp~~l~~~l~--~~~~~~--~~~l~~lViDE 176 (540)
+...+... .|....+.++.....+. ....+ ..+|++.||+.+...-. .....+ ..-+.++||||
T Consensus 320 Qv~~L~~~------~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDE 393 (941)
T KOG0351|consen 320 QVTHLSKK------GIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDE 393 (941)
T ss_pred HHHhhhhc------CcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecH
Confidence 76666433 56667777776653322 22223 57899999999754221 111111 12378999999
Q ss_pred ccccccCC--cHHHHHHHHH---hCCcccceeeEeeeccHHHHHH--HHHhcCCCeEEEecCCCCCCCCCeEEEEEEcCc
Q psy16633 177 ADLVFSFG--YEDDMKAVLK---FLPKLYQAILASATLSEDVLSL--KHLILRNPVILKLEEPAIAPVSQLAHYHILAQE 249 (540)
Q Consensus 177 ah~l~~~~--~~~~l~~i~~---~l~~~~q~il~SATl~~~~~~~--~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~ 249 (540)
||++..|| |+.+.+.+.. ..+. ..+|.+|||.+..+..- ..+.+.+|.++.-. ....++...+.....
T Consensus 394 AHCVSqWgHdFRp~Yk~l~~l~~~~~~-vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~s----fnR~NL~yeV~~k~~ 468 (941)
T KOG0351|consen 394 AHCVSQWGHDFRPSYKRLGLLRIRFPG-VPFIALTATATERVREDVIRSLGLRNPELFKSS----FNRPNLKYEVSPKTD 468 (941)
T ss_pred HHHhhhhcccccHHHHHHHHHHhhCCC-CCeEEeehhccHHHHHHHHHHhCCCCcceeccc----CCCCCceEEEEeccC
Confidence 99999997 6666666543 3443 78999999999888754 44556677644322 122334333222222
Q ss_pred ccHHHHHHHHHHhcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccC
Q psy16633 250 DEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329 (540)
Q Consensus 250 ~~k~~~l~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~ 329 (540)
.+....+....+.......+||||.++.+|+.+...|.+.|+++..||+||+.++|..+...|..++++|++||=
T Consensus 469 ~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATV----- 543 (941)
T KOG0351|consen 469 KDALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATV----- 543 (941)
T ss_pred ccchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEe-----
Confidence 344444455555566778999999999999999999999999999999999999999999999999999999998
Q ss_pred CcccccccccccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEEeccccccc
Q psy16633 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDL 400 (540)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e~~~ 400 (540)
++++|||.|+|+.||||.+|.|.+.|+|.+|||||.|....|++|+...+...
T Consensus 544 ------------------AFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~ 596 (941)
T KOG0351|consen 544 ------------------AFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISE 596 (941)
T ss_pred ------------------eccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHH
Confidence 99999999999999999999999999999999999999999999999876543
No 72
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=8.4e-35 Score=296.89 Aligned_cols=294 Identities=20% Similarity=0.229 Sum_probs=204.7
Q ss_pred HHHHHHHHHhcCCc--EEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcC--
Q psy16633 44 IQERAIPLILQNKD--VLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCS-- 119 (540)
Q Consensus 44 ~Q~~ai~~il~gkd--~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~-- 119 (540)
+|.++++.+.++.+ +++.||||||||.+|++|++. .+.++++++|+++|+.|+++.++.++....
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~-----------~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~ 69 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLH-----------GENDTIALYPTNALIEDQTEAIKEFVDVFKPE 69 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHH-----------cCCCEEEEeChHHHHHHHHHHHHHHHHhcCCC
Confidence 49999999999875 789999999999999999883 234679999999999999999999876542
Q ss_pred CCceEEEeecCcccc--c------------------chhhhhCCCCEEEEChHHHHHHHhcC----c---CCccCCccEE
Q psy16633 120 RDVKCVDISEQVDVS--V------------------QEPLLVERPDIVVATPARALAHLKAK----T---LDLKSSLEIV 172 (540)
Q Consensus 120 ~~i~~~~~~~~~~~~--~------------------~~~~l~~~~~Ivv~Tp~~l~~~l~~~----~---~~~~~~l~~l 172 (540)
....+..++|....+ . +.......+.|+++||+.+..++... . ..+...+++|
T Consensus 70 ~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~i 149 (357)
T TIGR03158 70 RDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTV 149 (357)
T ss_pred CCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEE
Confidence 245556666642111 0 00111246889999999987665431 1 1123789999
Q ss_pred EEcCccccccCCcH-----HHHHHHHHhCCcccceeeEeeeccHHHHHHHHHh--cCCCeEEEecCC-----------CC
Q psy16633 173 IIDEADLVFSFGYE-----DDMKAVLKFLPKLYQAILASATLSEDVLSLKHLI--LRNPVILKLEEP-----------AI 234 (540)
Q Consensus 173 ViDEah~l~~~~~~-----~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~--l~~p~~i~~~~~-----------~~ 234 (540)
||||+|.+..++.. .....++.......++++||||+++.+....... +..|....-... ..
T Consensus 150 V~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~ 229 (357)
T TIGR03158 150 IFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADN 229 (357)
T ss_pred EEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccc
Confidence 99999987654321 1223333333445799999999999877665543 444433221110 00
Q ss_pred ------CCCCCeEEEEEEcCcccHHHHHHHHHHhc------ccCCcEEEEecChhhHHHHHHHHHhCC--CceEEeCCCC
Q psy16633 235 ------APVSQLAHYHILAQEDEKATILYTLLKLN------LVQGKTIIFVNTVDKCYKLKLYLEQFK--ISTCVLNSEL 300 (540)
Q Consensus 235 ------~~~~~l~~~~~~~~~~~k~~~l~~ll~~~------~~~~k~IIF~~s~~~~~~l~~~L~~~~--~~~~~l~~~l 300 (540)
+....+.+.+.. ....+...+..+++.. ..++++|||||++..+..++..|++.+ +.+..+||.+
T Consensus 230 ~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~ 308 (357)
T TIGR03158 230 KTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFA 308 (357)
T ss_pred cccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCC
Confidence 001234444444 3334444333333211 245699999999999999999999864 5788899999
Q ss_pred CHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccc
Q psy16633 301 PAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRT 380 (540)
Q Consensus 301 ~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRa 380 (540)
++..|..+ ++.+|||||| +++||||++.+ +|| ++ |.+.++|+||+||+
T Consensus 309 ~~~~R~~~------~~~~iLVaTd-----------------------v~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~ 356 (357)
T TIGR03158 309 PKKDRERA------MQFDILLGTS-----------------------TVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRL 356 (357)
T ss_pred CHHHHHHh------ccCCEEEEec-----------------------HHhcccCCCCc-eEE-EC-CCCHHHHhhhcccC
Confidence 99988654 4789999999 99999999987 565 55 89999999999999
Q ss_pred c
Q psy16633 381 A 381 (540)
Q Consensus 381 g 381 (540)
|
T Consensus 357 g 357 (357)
T TIGR03158 357 G 357 (357)
T ss_pred C
Confidence 7
No 73
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=1.2e-34 Score=308.95 Aligned_cols=319 Identities=18% Similarity=0.147 Sum_probs=235.8
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHH
Q psy16633 36 LGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELT 115 (540)
Q Consensus 36 ~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~ 115 (540)
+|. +|+++|..+.+.+..|+ ++.++||+|||++|.+|++-..+ .+..+.|++||++||.|.++.+..+.
T Consensus 53 lg~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL--------~G~~V~VvTpt~~LA~qdae~~~~l~ 121 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNAL--------TGKGVHVVTVNDYLAQRDAEWMGQVY 121 (745)
T ss_pred hCC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHH--------hCCCEEEEcCCHHHHHHHHHHHHHHh
Confidence 477 89999999999888776 99999999999999999964433 25569999999999999999999999
Q ss_pred hhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHH-HHHHhcCc------CCccCCccEEEEcCccccccCC-cH-
Q psy16633 116 MKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARA-LAHLKAKT------LDLKSSLEIVIIDEADLVFSFG-YE- 186 (540)
Q Consensus 116 ~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l-~~~l~~~~------~~~~~~l~~lViDEah~l~~~~-~~- 186 (540)
... ++++..+.|+.+...+... ..++|+|+||++| .++++.+. ..+ +.+.++||||+|.++-.. ..
T Consensus 122 ~~L--GLsv~~i~g~~~~~~r~~~--y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~-r~l~~aIIDEaDs~LIDeaRtp 196 (745)
T TIGR00963 122 RFL--GLSVGLILSGMSPEERREA--YACDITYGTNNELGFDYLRDNMAHSKEEKVQ-RPFHFAIIDEVDSILIDEARTP 196 (745)
T ss_pred ccC--CCeEEEEeCCCCHHHHHHh--cCCCEEEECCCchhhHHHhcccccchhhhhc-cccceeEeecHHHHhHHhhhhH
Confidence 887 6888888888765544333 3589999999999 88887662 344 889999999999865210 00
Q ss_pred --------------HHHHHHHHhCCcc-----------------------------------------------------
Q psy16633 187 --------------DDMKAVLKFLPKL----------------------------------------------------- 199 (540)
Q Consensus 187 --------------~~l~~i~~~l~~~----------------------------------------------------- 199 (540)
.....+...+...
T Consensus 197 Liisg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~ 276 (745)
T TIGR00963 197 LIISGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELF 276 (745)
T ss_pred HhhcCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHH
Confidence 0001111111000
Q ss_pred ----------------------------------------------------------------cceeeEeeeccHHHHH
Q psy16633 200 ----------------------------------------------------------------YQAILASATLSEDVLS 215 (540)
Q Consensus 200 ----------------------------------------------------------------~q~il~SATl~~~~~~ 215 (540)
..+.+||.|.......
T Consensus 277 ~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E 356 (745)
T TIGR00963 277 EKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEE 356 (745)
T ss_pred hcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHH
Confidence 0244555555444444
Q ss_pred HHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcCcccHHHHHHH-HHHhcccCCcEEEEecChhhHHHHHHHHHhCCCceE
Q psy16633 216 LKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYT-LLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTC 294 (540)
Q Consensus 216 ~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~-ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~ 294 (540)
+...+--+-+.+....+.. ..-..-.+.....+|+..+.. +.+....+.++||||+|+..++.+...|.+.|+++.
T Consensus 357 ~~~iY~l~vv~IPtnkp~~---R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~ 433 (745)
T TIGR00963 357 FEKIYNLEVVVVPTNRPVI---RKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHN 433 (745)
T ss_pred HHHHhCCCEEEeCCCCCee---eeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeE
Confidence 4333332222211111100 000011223345566655544 444455677999999999999999999999999999
Q ss_pred EeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccccccccccCccccccccCCCCC-------cCEEEeCCCC
Q psy16633 295 VLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQF-------VSNVINFDFP 367 (540)
Q Consensus 295 ~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~-------v~~Vi~~d~p 367 (540)
++|+. +..|+..+..|..+...|+|||| +++||+|++. .-+||+++.|
T Consensus 434 ~Lna~--q~~rEa~ii~~ag~~g~VtIATn-----------------------mAgRGtDI~l~~V~~~GGl~VI~t~~p 488 (745)
T TIGR00963 434 VLNAK--NHEREAEIIAQAGRKGAVTIATN-----------------------MAGRGTDIKLEEVKELGGLYVIGTERH 488 (745)
T ss_pred EeeCC--hHHHHHHHHHhcCCCceEEEEec-----------------------cccCCcCCCccchhhcCCcEEEecCCC
Confidence 99998 88999999999999999999999 9999999998 4599999999
Q ss_pred CCcccchhccccccCCCCCceEEEEeccccc
Q psy16633 368 LDIQCYIHRAGRTARGKNQGTALSFVSLREQ 398 (540)
Q Consensus 368 ~s~~~yiqr~GRagR~g~~g~~i~~~~~~e~ 398 (540)
.|.+.|.||+|||||.|.+|.+..|++.+|.
T Consensus 489 ~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD~ 519 (745)
T TIGR00963 489 ESRRIDNQLRGRSGRQGDPGSSRFFLSLEDN 519 (745)
T ss_pred CcHHHHHHHhccccCCCCCcceEEEEeccHH
Confidence 9999999999999999999999999997653
No 74
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=1.2e-34 Score=310.93 Aligned_cols=320 Identities=17% Similarity=0.121 Sum_probs=223.6
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHH
Q psy16633 36 LGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELT 115 (540)
Q Consensus 36 ~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~ 115 (540)
+|. .|+++|......+.+| .++.++||+|||++|++|++...+. +..++|++|+++||.|+++.+..+.
T Consensus 67 lgl-rpydVQlig~l~l~~G--~Iaem~TGeGKTLta~Lpa~l~aL~--------g~~V~VVTpn~yLA~Rdae~m~~l~ 135 (762)
T TIGR03714 67 LGM-FPYDVQVLGAIVLHQG--NIAEMKTGEGKTLTATMPLYLNALT--------GKGAMLVTTNDYLAKRDAEEMGPVY 135 (762)
T ss_pred cCC-CccHHHHHHHHHhcCC--ceeEecCCcchHHHHHHHHHHHhhc--------CCceEEeCCCHHHHHHHHHHHHHHH
Confidence 465 6666666666655544 7999999999999999998766543 4569999999999999999999999
Q ss_pred hhcCCCceEEEeecCcc---cccchhhhhCCCCEEEEChHHH-HHHHhcC------cCCccCCccEEEEcCccccccCC-
Q psy16633 116 MKCSRDVKCVDISEQVD---VSVQEPLLVERPDIVVATPARA-LAHLKAK------TLDLKSSLEIVIIDEADLVFSFG- 184 (540)
Q Consensus 116 ~~~~~~i~~~~~~~~~~---~~~~~~~l~~~~~Ivv~Tp~~l-~~~l~~~------~~~~~~~l~~lViDEah~l~~~~- 184 (540)
..+ ++++..+.++.. ..........+++|+++||++| .+.+... ...+ +.+.++|+||||.|+-..
T Consensus 136 ~~L--GLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~-r~l~~~IVDEaDsILiDea 212 (762)
T TIGR03714 136 EWL--GLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFL-RPFNYVIVDEVDSVLLDSA 212 (762)
T ss_pred hhc--CCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhccc-ccCcEEEEecHhhHhhccC
Confidence 888 455555544321 2222233335799999999999 4555332 2223 789999999999875211
Q ss_pred ---------------cHHHHHHHHHhCCcc--------------------------------------------------
Q psy16633 185 ---------------YEDDMKAVLKFLPKL-------------------------------------------------- 199 (540)
Q Consensus 185 ---------------~~~~l~~i~~~l~~~-------------------------------------------------- 199 (540)
....+..+...+...
T Consensus 213 rtpliisg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~ 292 (762)
T TIGR03714 213 QTPLVISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAH 292 (762)
T ss_pred cCCeeeeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHH
Confidence 111111222222110
Q ss_pred -------------------------------------------------------------------cceeeEeeeccHH
Q psy16633 200 -------------------------------------------------------------------YQAILASATLSED 212 (540)
Q Consensus 200 -------------------------------------------------------------------~q~il~SATl~~~ 212 (540)
.++.+||.|....
T Consensus 293 ~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~ 372 (762)
T TIGR03714 293 YLFKRNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVA 372 (762)
T ss_pred HHHhcCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhH
Confidence 1344555555444
Q ss_pred HHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcCcccHHHHHHHHHHh-cccCCcEEEEecChhhHHHHHHHHHhCCC
Q psy16633 213 VLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKL-NLVQGKTIIFVNTVDKCYKLKLYLEQFKI 291 (540)
Q Consensus 213 ~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~ll~~-~~~~~k~IIF~~s~~~~~~l~~~L~~~~~ 291 (540)
..++...+--+ ++.+.... +....-..-.+.+....|...+...++. ...+.++||||+|++.++.+...|.+.|+
T Consensus 373 ~~Ef~~iY~l~--v~~IPt~k-p~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi 449 (762)
T TIGR03714 373 EKEFIETYSLS--VVKIPTNK-PIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGI 449 (762)
T ss_pred HHHHHHHhCCC--EEEcCCCC-CeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCC
Confidence 44444322211 12222111 0000000113455666787777666643 34567999999999999999999999999
Q ss_pred ceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccccccccccCccccccccCCCC---------CcCEEE
Q psy16633 292 STCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQ---------FVSNVI 362 (540)
Q Consensus 292 ~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~---------~v~~Vi 362 (540)
++.++|+.+.+.++..+...++.| .|+|||| +++||+|++ ++.+|+
T Consensus 450 ~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATd-----------------------mAgRGtDI~l~~~v~~~GGL~vIi 504 (762)
T TIGR03714 450 PHNLLNAQNAAKEAQIIAEAGQKG--AVTVATS-----------------------MAGRGTDIKLGKGVAELGGLAVIG 504 (762)
T ss_pred CEEEecCCChHHHHHHHHHcCCCC--eEEEEcc-----------------------ccccccCCCCCccccccCCeEEEE
Confidence 999999999998887777766666 7999999 999999999 999999
Q ss_pred eCCCCCCcccchhccccccCCCCCceEEEEeccccc
Q psy16633 363 NFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQ 398 (540)
Q Consensus 363 ~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e~ 398 (540)
+|++|..... .||+|||||.|.+|.+++|++.+|.
T Consensus 505 t~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~eD~ 539 (762)
T TIGR03714 505 TERMENSRVD-LQLRGRSGRQGDPGSSQFFVSLEDD 539 (762)
T ss_pred ecCCCCcHHH-HHhhhcccCCCCceeEEEEEccchh
Confidence 9999987766 9999999999999999999997654
No 75
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=1.9e-33 Score=316.60 Aligned_cols=323 Identities=22% Similarity=0.251 Sum_probs=236.1
Q ss_pred CCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhc
Q psy16633 39 LEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKC 118 (540)
Q Consensus 39 ~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~ 118 (540)
-+|+++|++++..++.+ ++++++|||+|||.++++++...+. ..+.++||++||++|+.|+.+.++.++...
T Consensus 14 ~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~-------~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~ 85 (773)
T PRK13766 14 IEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLH-------KKGGKVLILAPTKPLVEQHAEFFRKFLNIP 85 (773)
T ss_pred CCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHH-------hCCCeEEEEeCcHHHHHHHHHHHHHHhCCC
Confidence 48999999999998887 9999999999999999988887762 256799999999999999999999876422
Q ss_pred CCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCCcHHHHHHHHHhCCc
Q psy16633 119 SRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPK 198 (540)
Q Consensus 119 ~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~ 198 (540)
...+..++|+..... +..+...++|+|+||+.+.+.+..+.+.+ ..+++|||||||++........+........+
T Consensus 86 --~~~v~~~~g~~~~~~-r~~~~~~~~iiv~T~~~l~~~l~~~~~~~-~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~ 161 (773)
T PRK13766 86 --EEKIVVFTGEVSPEK-RAELWEKAKVIVATPQVIENDLIAGRISL-EDVSLLIFDEAHRAVGNYAYVYIAERYHEDAK 161 (773)
T ss_pred --CceEEEEeCCCCHHH-HHHHHhCCCEEEECHHHHHHHHHcCCCCh-hhCcEEEEECCccccccccHHHHHHHHHhcCC
Confidence 345666777665443 33344578999999999988887776666 88999999999988754333334433333344
Q ss_pred ccceeeEeeeccHHHHH---HHHHhc------------------CCCeE--EEecCC-----------------------
Q psy16633 199 LYQAILASATLSEDVLS---LKHLIL------------------RNPVI--LKLEEP----------------------- 232 (540)
Q Consensus 199 ~~q~il~SATl~~~~~~---~~~~~l------------------~~p~~--i~~~~~----------------------- 232 (540)
...+++||||+...... ...... ..+.+ +.+.-.
T Consensus 162 ~~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~ 241 (773)
T PRK13766 162 NPLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKE 241 (773)
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56799999998433211 111110 00000 000000
Q ss_pred -CCC-CCC-------------CeEEE------------------------------------------------------
Q psy16633 233 -AIA-PVS-------------QLAHY------------------------------------------------------ 243 (540)
Q Consensus 233 -~~~-~~~-------------~l~~~------------------------------------------------------ 243 (540)
... ... .+...
T Consensus 242 ~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~ 321 (773)
T PRK13766 242 LGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSK 321 (773)
T ss_pred CCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcH
Confidence 000 000 00000
Q ss_pred ------------------EEEcCcccHHHHHHHHHHhc---ccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCC---
Q psy16633 244 ------------------HILAQEDEKATILYTLLKLN---LVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSE--- 299 (540)
Q Consensus 244 ------------------~~~~~~~~k~~~l~~ll~~~---~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~--- 299 (540)
........|...|..+++.. ...+++||||++++.|..|+..|...|+.+..+||.
T Consensus 322 ~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~ 401 (773)
T PRK13766 322 ASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASK 401 (773)
T ss_pred HHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccc
Confidence 00001123455555555432 346799999999999999999999999999999876
Q ss_pred -----CCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEeCCCCCCcccch
Q psy16633 300 -----LPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYI 374 (540)
Q Consensus 300 -----l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yi 374 (540)
|++.+|..++..|++|.+++||||+ ++++|+|+|++++||+||+|+|...|+
T Consensus 402 ~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~-----------------------~~~eGldi~~~~~VI~yd~~~s~~r~i 458 (773)
T PRK13766 402 DGDKGMSQKEQIEILDKFRAGEFNVLVSTS-----------------------VAEEGLDIPSVDLVIFYEPVPSEIRSI 458 (773)
T ss_pred cccCCCCHHHHHHHHHHHHcCCCCEEEECC-----------------------hhhcCCCcccCCEEEEeCCCCCHHHHH
Confidence 9999999999999999999999999 899999999999999999999999999
Q ss_pred hccccccCCCCCceEEEEecccc
Q psy16633 375 HRAGRTARGKNQGTALSFVSLRE 397 (540)
Q Consensus 375 qr~GRagR~g~~g~~i~~~~~~e 397 (540)
||+||+||.|. |.++.++....
T Consensus 459 QR~GR~gR~~~-~~v~~l~~~~t 480 (773)
T PRK13766 459 QRKGRTGRQEE-GRVVVLIAKGT 480 (773)
T ss_pred HHhcccCcCCC-CEEEEEEeCCC
Confidence 99999999865 88888887543
No 76
>KOG0947|consensus
Probab=100.00 E-value=5.1e-34 Score=299.58 Aligned_cols=312 Identities=21% Similarity=0.234 Sum_probs=237.9
Q ss_pred HHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHH
Q psy16633 33 IAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQ 112 (540)
Q Consensus 33 l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~ 112 (540)
....+| +|-.+|++||-++.+|.+++|.|+|.+|||+++-.++.-. ...+.|++|.+|.++|.+|.++.++
T Consensus 291 a~~~pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAiala--------q~h~TR~iYTSPIKALSNQKfRDFk 361 (1248)
T KOG0947|consen 291 ALIYPF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALA--------QKHMTRTIYTSPIKALSNQKFRDFK 361 (1248)
T ss_pred HhhCCC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHH--------HhhccceEecchhhhhccchHHHHH
Confidence 344577 7999999999999999999999999999999866555422 2478999999999999999999999
Q ss_pred HHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCCcHHHHHHH
Q psy16633 113 ELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAV 192 (540)
Q Consensus 113 ~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i 192 (540)
.-+... ..++|+.... ..+.++|+|++.|.+++.++.-.. +.+.+||+||+|.+.+..++..|+++
T Consensus 362 ~tF~Dv------gLlTGDvqin-------PeAsCLIMTTEILRsMLYrgadli-RDvE~VIFDEVHYiND~eRGvVWEEV 427 (1248)
T KOG0947|consen 362 ETFGDV------GLLTGDVQIN-------PEASCLIMTTEILRSMLYRGADLI-RDVEFVIFDEVHYINDVERGVVWEEV 427 (1248)
T ss_pred Hhcccc------ceeecceeeC-------CCcceEeehHHHHHHHHhcccchh-hccceEEEeeeeecccccccccceee
Confidence 877654 3788887655 567899999999999999987665 88999999999999999999999999
Q ss_pred HHhCCcccceeeEeeeccHHHHHHHHH--hcCCCeEEEecCCCCCCCCCeEEEEEEcCc---------------------
Q psy16633 193 LKFLPKLYQAILASATLSEDVLSLKHL--ILRNPVILKLEEPAIAPVSQLAHYHILAQE--------------------- 249 (540)
Q Consensus 193 ~~~l~~~~q~il~SATl~~~~~~~~~~--~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~--------------------- 249 (540)
+-++|+..++|++|||.|+..+-..+. .-..-..+.-.... +..+.||.....+
T Consensus 428 iIMlP~HV~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kR---PVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~ 504 (1248)
T KOG0947|consen 428 IIMLPRHVNFILLSATVPNTLEFADWIGRTKQKTIYVISTSKR---PVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKD 504 (1248)
T ss_pred eeeccccceEEEEeccCCChHHHHHHhhhccCceEEEEecCCC---ccceEEEEEeccceehhhcccchhhhhcchhhhh
Confidence 999999999999999999877643332 22211111111110 1112222211100
Q ss_pred ------------------------------------------c-cH----HHHHHHHHHhcccCCcEEEEecChhhHHHH
Q psy16633 250 ------------------------------------------D-EK----ATILYTLLKLNLVQGKTIIFVNTVDKCYKL 282 (540)
Q Consensus 250 ------------------------------------------~-~k----~~~l~~ll~~~~~~~k~IIF~~s~~~~~~l 282 (540)
. .+ +..+...++.. ..-|+||||-++..|+..
T Consensus 505 ~~~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~-~lLP~VvFvFSkkrCde~ 583 (1248)
T KOG0947|consen 505 SLKKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKK-NLLPVVVFVFSKKRCDEY 583 (1248)
T ss_pred hhcccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhc-ccCceEEEEEccccHHHH
Confidence 0 00 11122222211 223899999999999999
Q ss_pred HHHHHhCCC---------------------------------------ceEEeCCCCCHHHHHHHHHHHhcCCccEEEeC
Q psy16633 283 KLYLEQFKI---------------------------------------STCVLNSELPAKARCHAVYQFNQGLYDVIIAS 323 (540)
Q Consensus 283 ~~~L~~~~~---------------------------------------~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT 323 (540)
+.+|..++. +++++|||+-+--++-+...|..|.++||+||
T Consensus 584 a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFAT 663 (1248)
T KOG0947|consen 584 ADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFAT 663 (1248)
T ss_pred HHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeeh
Confidence 999986543 77899999999999999999999999999999
Q ss_pred CCCccCCcccccccccccccCccccccccCCCCCcCEEEe----CCCC----CCcccchhccccccCCCC--CceEEEEe
Q psy16633 324 DEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVIN----FDFP----LDIQCYIHRAGRTARGKN--QGTALSFV 393 (540)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~----~d~p----~s~~~yiqr~GRagR~g~--~g~~i~~~ 393 (540)
. ++++|+|+|.-.+|+. .|.- ..+.+|.|++|||||.|- .|++|.++
T Consensus 664 E-----------------------TFAMGVNMPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~ 720 (1248)
T KOG0947|consen 664 E-----------------------TFAMGVNMPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMC 720 (1248)
T ss_pred h-----------------------hhhhhcCCCceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEe
Confidence 9 9999999998777764 2221 368999999999999995 46666665
Q ss_pred c
Q psy16633 394 S 394 (540)
Q Consensus 394 ~ 394 (540)
.
T Consensus 721 ~ 721 (1248)
T KOG0947|consen 721 K 721 (1248)
T ss_pred c
Confidence 4
No 77
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=4e-33 Score=312.91 Aligned_cols=322 Identities=16% Similarity=0.207 Sum_probs=221.5
Q ss_pred HHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCc----HHHHHHHHHHHHH-HHhhcC
Q psy16633 45 QERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPS----KELCNQLHKNIQE-LTMKCS 119 (540)
Q Consensus 45 Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt----~~La~q~~~~l~~-l~~~~~ 119 (540)
-.+.++.+..++.++|.|+||||||. .+|.+ ++... ......+++.-|. ++||.++.+.+.. ++..+|
T Consensus 79 r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~--lle~g---~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VG 151 (1294)
T PRK11131 79 KQDILEAIRDHQVVIVAGETGSGKTT--QLPKI--CLELG---RGVKGLIGHTQPRRLAARTVANRIAEELETELGGCVG 151 (1294)
T ss_pred HHHHHHHHHhCCeEEEECCCCCCHHH--HHHHH--HHHcC---CCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceec
Confidence 34455566566778899999999998 67733 22210 1122355556675 5777777776664 333222
Q ss_pred CCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCcc-ccccCCcHHH-HHHHHHhCC
Q psy16633 120 RDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEAD-LVFSFGYEDD-MKAVLKFLP 197 (540)
Q Consensus 120 ~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah-~l~~~~~~~~-l~~i~~~l~ 197 (540)
..++ ... .....+.|+|+|||+|++.+..+.. + +++++||||||| ++++.+|... +..++...
T Consensus 152 Y~vr---------f~~---~~s~~t~I~v~TpG~LL~~l~~d~~-L-s~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~r- 216 (1294)
T PRK11131 152 YKVR---------FND---QVSDNTMVKLMTDGILLAEIQQDRL-L-MQYDTIIIDEAHERSLNIDFILGYLKELLPRR- 216 (1294)
T ss_pred eeec---------Ccc---ccCCCCCEEEEChHHHHHHHhcCCc-c-ccCcEEEecCccccccccchHHHHHHHhhhcC-
Confidence 1111 111 1135689999999999999987644 4 899999999999 5777776642 33333322
Q ss_pred cccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcCccc---HHHHHHHHHHh-----cccCCcE
Q psy16633 198 KLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDE---KATILYTLLKL-----NLVQGKT 269 (540)
Q Consensus 198 ~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~~~---k~~~l~~ll~~-----~~~~~k~ 269 (540)
+..|+|+||||++. ..+...+...|+ +.+..... .+.++|......+ +...+..++.. ....+.+
T Consensus 217 pdlKvILmSATid~--e~fs~~F~~apv-I~V~Gr~~----pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdI 289 (1294)
T PRK11131 217 PDLKVIITSATIDP--ERFSRHFNNAPI-IEVSGRTY----PVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDI 289 (1294)
T ss_pred CCceEEEeeCCCCH--HHHHHHcCCCCE-EEEcCccc----cceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCE
Confidence 35799999999975 356666665664 44543322 2445555543221 22233332211 2346789
Q ss_pred EEEecChhhHHHHHHHHHhCCCc---eEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccccccccccCcc
Q psy16633 270 IIFVNTVDKCYKLKLYLEQFKIS---TCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKE 346 (540)
Q Consensus 270 IIF~~s~~~~~~l~~~L~~~~~~---~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~ 346 (540)
|||+++..++..++..|.+.+++ +..+||+|++.+|..+++. .|..+||||||
T Consensus 290 LVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATN---------------------- 345 (1294)
T PRK11131 290 LIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATN---------------------- 345 (1294)
T ss_pred EEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEecc----------------------
Confidence 99999999999999999987765 6789999999999999886 47899999999
Q ss_pred ccccccCCCCCcCEEEeCCC---------------C---CCcccchhccccccCCCCCceEEEEeccccccccccccchh
Q psy16633 347 SGVSRGIDFQFVSNVINFDF---------------P---LDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALS 408 (540)
Q Consensus 347 ~~~~~GiD~~~v~~Vi~~d~---------------p---~s~~~yiqr~GRagR~g~~g~~i~~~~~~e~~~~~~~~~~~ 408 (540)
++++|||+|+|++||++|. | .|..+|.||+|||||. .+|.|+.+++..+...+......+
T Consensus 346 -IAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~~~~~~~~PE 423 (1294)
T PRK11131 346 -VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFLSRPEFTDPE 423 (1294)
T ss_pred -HHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHHHhhhcccCCc
Confidence 8999999999999999863 3 3557899999999999 789999999988776665555555
Q ss_pred hhhhhhhHHHHHH
Q psy16633 409 FVSLREQDLMNDV 421 (540)
Q Consensus 409 ~~~~~~~~~~~~i 421 (540)
+.......++-.+
T Consensus 424 IlR~~L~~viL~l 436 (1294)
T PRK11131 424 ILRTNLASVILQM 436 (1294)
T ss_pred cccCCHHHHHHHH
Confidence 5555444443333
No 78
>KOG0354|consensus
Probab=100.00 E-value=2.3e-32 Score=287.71 Aligned_cols=324 Identities=21% Similarity=0.257 Sum_probs=228.2
Q ss_pred CCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhh
Q psy16633 38 WLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMK 117 (540)
Q Consensus 38 ~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~ 117 (540)
.-.++.+|.+.+..+| |+++||++|||+|||.+++..++.++.+ .+..++|+++|++-|+.|+...+..++..
T Consensus 60 ~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw------~p~~KiVF~aP~~pLv~QQ~a~~~~~~~~ 132 (746)
T KOG0354|consen 60 NLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEW------RPKGKVVFLAPTRPLVNQQIACFSIYLIP 132 (746)
T ss_pred cccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhc------CCcceEEEeeCCchHHHHHHHHHhhccCc
Confidence 3468999999999999 9999999999999999999999988865 35699999999999999988666655432
Q ss_pred cCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccC-CcHHHHHHHHHhC
Q psy16633 118 CSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSF-GYEDDMKAVLKFL 196 (540)
Q Consensus 118 ~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~-~~~~~l~~i~~~l 196 (540)
-......|+.........+....+|+|+||+.+.+.+.++...-++.+.++||||||+-... .|...+..++..-
T Consensus 133 ----~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k 208 (746)
T KOG0354|consen 133 ----YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLK 208 (746)
T ss_pred ----ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhh
Confidence 23333334433344444566788999999999999998876543588999999999987654 4555565666555
Q ss_pred CcccceeeEeeeccHHHHHHHHHh---cCC--------------------CeEEEe------------------------
Q psy16633 197 PKLYQAILASATLSEDVLSLKHLI---LRN--------------------PVILKL------------------------ 229 (540)
Q Consensus 197 ~~~~q~il~SATl~~~~~~~~~~~---l~~--------------------p~~i~~------------------------ 229 (540)
....|++++|||+..+......-. +-+ +..+.+
T Consensus 209 ~~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~ 288 (746)
T KOG0354|consen 209 NQGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQE 288 (746)
T ss_pred hccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHh
Confidence 555599999999975443321110 000 000000
Q ss_pred ------cCCC-----------------CCCCCC--------------------eEE---------EE-------------
Q psy16633 230 ------EEPA-----------------IAPVSQ--------------------LAH---------YH------------- 244 (540)
Q Consensus 230 ------~~~~-----------------~~~~~~--------------------l~~---------~~------------- 244 (540)
.... ...... +.. ++
T Consensus 289 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~ 368 (746)
T KOG0354|consen 289 EGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLEL 368 (746)
T ss_pred cCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHh
Confidence 0000 000000 000 00
Q ss_pred ------------------EEc--CcccHHHHHHHHHHh---cccCCcEEEEecChhhHHHHHHHHHh---CCCceEEe--
Q psy16633 245 ------------------ILA--QEDEKATILYTLLKL---NLVQGKTIIFVNTVDKCYKLKLYLEQ---FKISTCVL-- 296 (540)
Q Consensus 245 ------------------~~~--~~~~k~~~l~~ll~~---~~~~~k~IIF~~s~~~~~~l~~~L~~---~~~~~~~l-- 296 (540)
... .+..|+..+..++.. .....++||||.++..|+.|..+|.+ .|++...+
T Consensus 369 e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiG 448 (746)
T KOG0354|consen 369 EARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIG 448 (746)
T ss_pred cchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeee
Confidence 000 001223333333221 12344899999999999999999984 24444444
Q ss_pred ------CCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEeCCCCCCc
Q psy16633 297 ------NSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDI 370 (540)
Q Consensus 297 ------~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~ 370 (540)
..+|++..+.++++.|+.|.++|||||+ +.++|+|++.|+.||-||...|+
T Consensus 449 q~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATS-----------------------V~EEGLDI~ec~lVIcYd~~snp 505 (746)
T KOG0354|consen 449 QGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATS-----------------------VAEEGLDIGECNLVICYDYSSNP 505 (746)
T ss_pred ccccccccccCHHHHHHHHHHHhCCCccEEEEec-----------------------chhccCCcccccEEEEecCCccH
Confidence 3489999999999999999999999999 88899999999999999999999
Q ss_pred ccchhccccccCCCCCceEEEEecccc
Q psy16633 371 QCYIHRAGRTARGKNQGTALSFVSLRE 397 (540)
Q Consensus 371 ~~yiqr~GRagR~g~~g~~i~~~~~~e 397 (540)
...+||.|| ||+ +.|.++++++..+
T Consensus 506 IrmIQrrGR-gRa-~ns~~vll~t~~~ 530 (746)
T KOG0354|consen 506 IRMVQRRGR-GRA-RNSKCVLLTTGSE 530 (746)
T ss_pred HHHHHHhcc-ccc-cCCeEEEEEcchh
Confidence 999999999 998 4577777777433
No 79
>KOG0353|consensus
Probab=100.00 E-value=8e-33 Score=264.63 Aligned_cols=332 Identities=20% Similarity=0.266 Sum_probs=249.1
Q ss_pred cCCCCHHHHHHHHH-CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCc
Q psy16633 22 TFTLFCIPLQAIAK-LGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPS 100 (540)
Q Consensus 22 ~~~L~~~i~~~l~~-~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt 100 (540)
+|+++....+-|+. +....++|.|..+|...+.|+|+++..|||.||+++|.+|++ .....+||++|.
T Consensus 75 ~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal-----------~adg~alvi~pl 143 (695)
T KOG0353|consen 75 DFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPAL-----------CADGFALVICPL 143 (695)
T ss_pred CCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHH-----------hcCCceEeechh
Confidence 67888887777776 477889999999999999999999999999999999999987 356789999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccch----hhh--hCCCCEEEEChHHHHH------HHhcCcCCccCC
Q psy16633 101 KELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQE----PLL--VERPDIVVATPARALA------HLKAKTLDLKSS 168 (540)
Q Consensus 101 ~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~----~~l--~~~~~Ivv~Tp~~l~~------~l~~~~~~~~~~ 168 (540)
.+|++.+.-++++++... ..+....+..... ... .....+++.||+.+.. .+.. .+.. ..
T Consensus 144 islmedqil~lkqlgi~a------s~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnklek-a~~~-~~ 215 (695)
T KOG0353|consen 144 ISLMEDQILQLKQLGIDA------SMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEK-ALEA-GF 215 (695)
T ss_pred HHHHHHHHHHHHHhCcch------hhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHH-Hhhc-ce
Confidence 999999999999886433 3333222211111 111 1346799999998643 2222 2333 66
Q ss_pred ccEEEEcCccccccCC--cHHHHHH--HHHhCCcccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEE
Q psy16633 169 LEIVIIDEADLVFSFG--YEDDMKA--VLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYH 244 (540)
Q Consensus 169 l~~lViDEah~l~~~~--~~~~l~~--i~~~l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~ 244 (540)
+.+|.|||+|+-..|| |+.+... ++++.-++..+++++||.++.+..-.+..+--.....+..... ..++. |.
T Consensus 216 ~~~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fn--r~nl~-ye 292 (695)
T KOG0353|consen 216 FKLIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFN--RPNLK-YE 292 (695)
T ss_pred eEEEeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccC--CCCce-eE
Confidence 8899999999999997 5555544 3444445678999999998877654443322111112221111 11222 22
Q ss_pred EEcCc---ccHHHHHHHHHHhcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEE
Q psy16633 245 ILAQE---DEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVII 321 (540)
Q Consensus 245 ~~~~~---~~k~~~l~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLI 321 (540)
+.-.+ ++-.+-+..+++....+...||||-+..+|+.++..|+..|+.+..+|+.|.+.+|.-+-+.|-.|++.|+|
T Consensus 293 v~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqviv 372 (695)
T KOG0353|consen 293 VRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIV 372 (695)
T ss_pred eeeCCCChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEE
Confidence 22223 333333444444444455789999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCccCCcccccccccccccCccccccccCCCCCcCEEEeCCCCCCcccchh--------------------------
Q psy16633 322 ASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIH-------------------------- 375 (540)
Q Consensus 322 aT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiq-------------------------- 375 (540)
||- ++++|||-|+|++||+..+|.|.+.|.|
T Consensus 373 atv-----------------------afgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqini 429 (695)
T KOG0353|consen 373 ATV-----------------------AFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINI 429 (695)
T ss_pred EEe-----------------------eecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeeh
Confidence 998 9999999999999999999999999999
Q ss_pred -----------------ccccccCCCCCceEEEEeccccc
Q psy16633 376 -----------------RAGRTARGKNQGTALSFVSLREQ 398 (540)
Q Consensus 376 -----------------r~GRagR~g~~g~~i~~~~~~e~ 398 (540)
..||+||.+.+..||+++--.+.
T Consensus 430 levctnfkiffavfsekesgragrd~~~a~cilyy~~~di 469 (695)
T KOG0353|consen 430 LEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFADI 469 (695)
T ss_pred hhhhccceeeeeeecchhccccccCCCcccEEEEechHHH
Confidence 78999999999999999875543
No 80
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=8.1e-32 Score=294.06 Aligned_cols=321 Identities=20% Similarity=0.203 Sum_probs=248.6
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHH
Q psy16633 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHK 109 (540)
Q Consensus 30 ~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~ 109 (540)
.......|| .|-++|++|+..+.+|.+++++||||||||.+...++...+ ..+.+++|++|.++|.+|.++
T Consensus 110 ~~~~~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al--------~~~qrviYTsPIKALsNQKyr 180 (1041)
T COG4581 110 APPAREYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALAL--------RDGQRVIYTSPIKALSNQKYR 180 (1041)
T ss_pred CcHHHhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHH--------HcCCceEeccchhhhhhhHHH
Confidence 445566789 79999999999999999999999999999999888887776 356779999999999999999
Q ss_pred HHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCCcHHHH
Q psy16633 110 NIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDM 189 (540)
Q Consensus 110 ~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~~~~l 189 (540)
.+...+... .-.++.++|+..++ +.+.|+|+|.+.|.+++..+...+ ..+.+||+||+|+|.+...+..|
T Consensus 181 dl~~~fgdv--~~~vGL~TGDv~IN-------~~A~clvMTTEILRnMlyrg~~~~-~~i~~ViFDEvHyi~D~eRG~VW 250 (1041)
T COG4581 181 DLLAKFGDV--ADMVGLMTGDVSIN-------PDAPCLVMTTEILRNMLYRGSESL-RDIEWVVFDEVHYIGDRERGVVW 250 (1041)
T ss_pred HHHHHhhhh--hhhccceecceeeC-------CCCceEEeeHHHHHHHhccCcccc-cccceEEEEeeeeccccccchhH
Confidence 988776544 23457788887766 678999999999999999987776 99999999999999999999999
Q ss_pred HHHHHhCCcccceeeEeeeccHHHHH--HHHHhcCCCeEEEecCCCCCCCCCeEEEEEEc-------CcccHH-----H-
Q psy16633 190 KAVLKFLPKLYQAILASATLSEDVLS--LKHLILRNPVILKLEEPAIAPVSQLAHYHILA-------QEDEKA-----T- 254 (540)
Q Consensus 190 ~~i~~~l~~~~q~il~SATl~~~~~~--~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~-------~~~~k~-----~- 254 (540)
+.++-++|+..+++++|||+|+..+- +....-..|..+...+.... .+.+|+... ++..++ .
T Consensus 251 EE~Ii~lP~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~Rpv---PL~~~~~~~~~l~~lvde~~~~~~~~~~~ 327 (1041)
T COG4581 251 EEVIILLPDHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPV---PLEHFVYVGKGLFDLVDEKKKFNAENFPS 327 (1041)
T ss_pred HHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCC---CeEEEEecCCceeeeecccccchhhcchh
Confidence 99999999999999999999986654 44444556666655544322 244444322 111110 0
Q ss_pred HHHHHH--------------------------------------Hh--cccCCcEEEEecChhhHHHHHHHHHhC-----
Q psy16633 255 ILYTLL--------------------------------------KL--NLVQGKTIIFVNTVDKCYKLKLYLEQF----- 289 (540)
Q Consensus 255 ~l~~ll--------------------------------------~~--~~~~~k~IIF~~s~~~~~~l~~~L~~~----- 289 (540)
....+. .. ....-++|+|+-++..|+..+..+...
T Consensus 328 a~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~ 407 (1041)
T COG4581 328 ANRSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLT 407 (1041)
T ss_pred hhhhhhccchhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccC
Confidence 000111 00 011237999999999999887766521
Q ss_pred -----------------------CC-------------ceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCccc
Q psy16633 290 -----------------------KI-------------STCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQI 333 (540)
Q Consensus 290 -----------------------~~-------------~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~ 333 (540)
++ .++++|++|-+..|..+...|..|..+|++||.
T Consensus 408 ~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTe--------- 478 (1041)
T COG4581 408 EEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATE--------- 478 (1041)
T ss_pred CcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehh---------
Confidence 11 345899999999999999999999999999999
Q ss_pred ccccccccccCccccccccCCCCCcCEEEe----CCC----CCCcccchhccccccCCCCC--ceEEEEecc
Q psy16633 334 NSTNNRKRKRDKESGVSRGIDFQFVSNVIN----FDF----PLDIQCYIHRAGRTARGKNQ--GTALSFVSL 395 (540)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~----~d~----p~s~~~yiqr~GRagR~g~~--g~~i~~~~~ 395 (540)
+++.|+|+|.-++|+- ||. +.++.+|.|+.|||||.|-+ |.+|++-.+
T Consensus 479 --------------T~s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~ 536 (1041)
T COG4581 479 --------------TFAIGINMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPP 536 (1041)
T ss_pred --------------hhhhhcCCcccceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCC
Confidence 9999999997666652 443 45899999999999999975 666666443
No 81
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.1e-31 Score=288.12 Aligned_cols=308 Identities=16% Similarity=0.163 Sum_probs=210.6
Q ss_pred CChHHHHHHHHHHhc-C--CcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHh
Q psy16633 40 EPTLIQERAIPLILQ-N--KDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTM 116 (540)
Q Consensus 40 ~pt~~Q~~ai~~il~-g--kd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~ 116 (540)
.++|+|++|+..+.. | +..++.+|||+|||++.+..+ ..+ +.++||+||+.+|+.||.+.+.+++.
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa-~~l----------~k~tLILvps~~Lv~QW~~ef~~~~~ 323 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAA-CTV----------KKSCLVLCTSAVSVEQWKQQFKMWST 323 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHH-HHh----------CCCEEEEeCcHHHHHHHHHHHHHhcC
Confidence 579999999998874 4 368999999999999866443 222 35699999999999999999998753
Q ss_pred hcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcC--------cCCccCCccEEEEcCccccccCCcHHH
Q psy16633 117 KCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAK--------TLDLKSSLEIVIIDEADLVFSFGYEDD 188 (540)
Q Consensus 117 ~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~--------~~~~~~~l~~lViDEah~l~~~~~~~~ 188 (540)
.. ...+..++|+.... ......|+|+|++.+.....+. .+.. ..+++||+||||++... .
T Consensus 324 l~--~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~-~~~gLII~DEvH~lpA~----~ 391 (732)
T TIGR00603 324 ID--DSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTN-REWGLILLDEVHVVPAA----M 391 (732)
T ss_pred CC--CceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhcc-ccCCEEEEEccccccHH----H
Confidence 22 33445555543211 1134689999999875432211 1111 46889999999988653 3
Q ss_pred HHHHHHhCCcccceeeEeeeccHHHHHHHH-HhcCCCeEEEecCCCCCCCC---CeEEEEEEcC----------------
Q psy16633 189 MKAVLKFLPKLYQAILASATLSEDVLSLKH-LILRNPVILKLEEPAIAPVS---QLAHYHILAQ---------------- 248 (540)
Q Consensus 189 l~~i~~~l~~~~q~il~SATl~~~~~~~~~-~~l~~p~~i~~~~~~~~~~~---~l~~~~~~~~---------------- 248 (540)
+..++..+.. ...+++|||+...-..... .++-.|......-.+..... ....+.+.++
T Consensus 392 fr~il~~l~a-~~RLGLTATP~ReD~~~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~ 470 (732)
T TIGR00603 392 FRRVLTIVQA-HCKLGLTATLVREDDKITDLNFLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRK 470 (732)
T ss_pred HHHHHHhcCc-CcEEEEeecCcccCCchhhhhhhcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchh
Confidence 4455555543 3579999998532111111 12223444333211110000 1111111111
Q ss_pred -------cccHHHHHHHHHHhcc-cCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcC-CccE
Q psy16633 249 -------EDEKATILYTLLKLNL-VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQG-LYDV 319 (540)
Q Consensus 249 -------~~~k~~~l~~ll~~~~-~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g-~~~i 319 (540)
...|+..+..+++... .+.++||||++++.+..++..| + +..+||++++.+|..+++.|+.| .+++
T Consensus 471 k~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L---~--~~~I~G~ts~~ER~~il~~Fr~~~~i~v 545 (732)
T TIGR00603 471 RMLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL---G--KPFIYGPTSQQERMQILQNFQHNPKVNT 545 (732)
T ss_pred hhHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc---C--CceEECCCCHHHHHHHHHHHHhCCCccE
Confidence 2234445555555432 4569999999999988888776 3 56789999999999999999865 8899
Q ss_pred EEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEeCCCC-CCcccchhccccccCCCCCceE-------EE
Q psy16633 320 IIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFP-LDIQCYIHRAGRTARGKNQGTA-------LS 391 (540)
Q Consensus 320 LIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p-~s~~~yiqr~GRagR~g~~g~~-------i~ 391 (540)
||+|+ ++.+|||+|++++||+++.| .|...|+||+||++|.+..|.+ ++
T Consensus 546 Lv~Sk-----------------------VgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~ 602 (732)
T TIGR00603 546 IFLSK-----------------------VGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYS 602 (732)
T ss_pred EEEec-----------------------ccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEE
Confidence 99999 89999999999999999998 5999999999999999876664 78
Q ss_pred Eecccccc
Q psy16633 392 FVSLREQD 399 (540)
Q Consensus 392 ~~~~~e~~ 399 (540)
|++.+..+
T Consensus 603 lVs~dT~E 610 (732)
T TIGR00603 603 LVSKDTQE 610 (732)
T ss_pred EecCCchH
Confidence 88766543
No 82
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=2e-30 Score=283.87 Aligned_cols=313 Identities=21% Similarity=0.212 Sum_probs=214.3
Q ss_pred CChHHHHHHHHHHhcC---CcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHh
Q psy16633 40 EPTLIQERAIPLILQN---KDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTM 116 (540)
Q Consensus 40 ~pt~~Q~~ai~~il~g---kd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~ 116 (540)
.+|+.|+++++.+.++ +++++.|+||||||.+|+.++.+.+ ..+.++||++||++|+.|+++.+++.+
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l--------~~g~~vLvLvPt~~L~~Q~~~~l~~~f- 214 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVL--------AQGKQALVLVPEIALTPQMLARFRARF- 214 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHH--------HcCCeEEEEeCcHHHHHHHHHHHHHHh-
Confidence 5899999999999984 7899999999999999988877665 246789999999999999999998754
Q ss_pred hcCCCceEEEeecCcccccc----hhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCC-----cH-
Q psy16633 117 KCSRDVKCVDISEQVDVSVQ----EPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFG-----YE- 186 (540)
Q Consensus 117 ~~~~~i~~~~~~~~~~~~~~----~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~-----~~- 186 (540)
+..+..+.|+.....+ .....+.++|+|+|++.+. ..+ .++++|||||+|...-.+ |.
T Consensus 215 ----g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~-~~l~liVvDEeh~~s~~~~~~p~y~~ 282 (679)
T PRK05580 215 ----GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPF-KNLGLIIVDEEHDSSYKQQEGPRYHA 282 (679)
T ss_pred ----CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccc-cCCCEEEEECCCccccccCcCCCCcH
Confidence 3456667776554332 2334467899999998763 223 789999999999654222 11
Q ss_pred HHHHHHHHhCCcccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcCcc-------cHHHHHHHH
Q psy16633 187 DDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQED-------EKATILYTL 259 (540)
Q Consensus 187 ~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~~-------~k~~~l~~l 259 (540)
.++. +......+.+++++|||++......... ..-..+.+....... .......+..... .-...+...
T Consensus 283 r~va-~~ra~~~~~~~il~SATps~~s~~~~~~--g~~~~~~l~~r~~~~-~~p~v~~id~~~~~~~~~~~~ls~~l~~~ 358 (679)
T PRK05580 283 RDLA-VVRAKLENIPVVLGSATPSLESLANAQQ--GRYRLLRLTKRAGGA-RLPEVEIIDMRELLRGENGSFLSPPLLEA 358 (679)
T ss_pred HHHH-HHHhhccCCCEEEEcCCCCHHHHHHHhc--cceeEEEeccccccC-CCCeEEEEechhhhhhcccCCCCHHHHHH
Confidence 2222 2223345689999999988655443321 112222232221000 0001111111110 011223333
Q ss_pred HHhc-ccCCcEEEEecChh------------------------------------------------------------h
Q psy16633 260 LKLN-LVQGKTIIFVNTVD------------------------------------------------------------K 278 (540)
Q Consensus 260 l~~~-~~~~k~IIF~~s~~------------------------------------------------------------~ 278 (540)
++.. ..+.++|||+|.+. .
T Consensus 359 i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G 438 (679)
T PRK05580 359 IKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPG 438 (679)
T ss_pred HHHHHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeecc
Confidence 3322 23458999987521 3
Q ss_pred HHHHHHHHHhC--CCceEEeCCCCCH--HHHHHHHHHHhcCCccEEEeCCCCccCCcccccccccccccCccccccccCC
Q psy16633 279 CYKLKLYLEQF--KISTCVLNSELPA--KARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGID 354 (540)
Q Consensus 279 ~~~l~~~L~~~--~~~~~~l~~~l~~--~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD 354 (540)
++++.+.|++. +.++..+|+++.+ .++..+++.|.+|+.+|||+|+ ++++|+|
T Consensus 439 ~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~-----------------------~iakG~d 495 (679)
T PRK05580 439 TERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQ-----------------------MLAKGHD 495 (679)
T ss_pred HHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEECh-----------------------hhccCCC
Confidence 56777777775 7789999999874 6789999999999999999999 9999999
Q ss_pred CCCcCEEE--eCCCCCCc----------ccchhccccccCCCCCceEEEEeccccccc
Q psy16633 355 FQFVSNVI--NFDFPLDI----------QCYIHRAGRTARGKNQGTALSFVSLREQDL 400 (540)
Q Consensus 355 ~~~v~~Vi--~~d~p~s~----------~~yiqr~GRagR~g~~g~~i~~~~~~e~~~ 400 (540)
+|+|++|+ +.|.+.+. ..|+|++||+||++..|.++......+...
T Consensus 496 ~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~~~~ 553 (679)
T PRK05580 496 FPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQTYHPEHPV 553 (679)
T ss_pred CCCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEEeCCCCCHH
Confidence 99999985 55555433 568999999999999999997766554433
No 83
>KOG0952|consensus
Probab=99.98 E-value=2.2e-31 Score=283.00 Aligned_cols=331 Identities=17% Similarity=0.247 Sum_probs=239.7
Q ss_pred HCCCCCChHHHHHHHHHHhc-CCcEEEEcCCCchHHHHHHHHHHHHHHhhcc--cccCCCeEEEEEcCcHHHHHHHHHHH
Q psy16633 35 KLGWLEPTLIQERAIPLILQ-NKDVLVRARTGSGKTGAFAIPMIQKIINLKQ--TAQVQETKALVLSPSKELCNQLHKNI 111 (540)
Q Consensus 35 ~~g~~~pt~~Q~~ai~~il~-gkd~li~a~TGsGKT~a~~ipil~~l~~~~~--~~~~~~~~vlil~Pt~~La~q~~~~l 111 (540)
-++|..+..+|..++|.+.+ ..|+|||||||||||..|++.||+.+-+... .....+.+++|++|+++||.++++.+
T Consensus 105 ~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~ 184 (1230)
T KOG0952|consen 105 FFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKF 184 (1230)
T ss_pred cccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHH
Confidence 35788899999999999987 4689999999999999999999998865211 22356889999999999999999888
Q ss_pred HHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhc---CcCCccCCccEEEEcCccccccCCcHHH
Q psy16633 112 QELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKA---KTLDLKSSLEIVIIDEADLVFSFGYEDD 188 (540)
Q Consensus 112 ~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~---~~~~~~~~l~~lViDEah~l~~~~~~~~ 188 (540)
.+-+... ++.+..++|+....... ...++|+|+||+.+ +.+.+ +...+.+.++++||||+|++-+ .++..
T Consensus 185 ~kkl~~~--gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKw-DvvTRk~~~d~~l~~~V~LviIDEVHlLhd-~RGpv 257 (1230)
T KOG0952|consen 185 SKKLAPL--GISVRELTGDTQLTKTE---IADTQIIVTTPEKW-DVVTRKSVGDSALFSLVRLVIIDEVHLLHD-DRGPV 257 (1230)
T ss_pred hhhcccc--cceEEEecCcchhhHHH---HHhcCEEEecccce-eeeeeeeccchhhhhheeeEEeeeehhhcC-cccch
Confidence 7766544 79999999987655433 25789999999995 33322 2244558899999999996654 57888
Q ss_pred HHHHHHhCC-------cccceeeEeeeccHHHHHHHHHhcCCC--eEEEecCCCCCCCCCeEEEEEEcCcc---cHHH--
Q psy16633 189 MKAVLKFLP-------KLYQAILASATLSEDVLSLKHLILRNP--VILKLEEPAIAPVSQLAHYHILAQED---EKAT-- 254 (540)
Q Consensus 189 l~~i~~~l~-------~~~q~il~SATl~~~~~~~~~~~l~~p--~~i~~~~~~~~~~~~l~~~~~~~~~~---~k~~-- 254 (540)
++.|+.+.. ...+++++|||+|+-.+- +...--|| .+..++....+ ..+.+..+-.... ....
T Consensus 258 lEtiVaRtlr~vessqs~IRivgLSATlPN~eDv-A~fL~vn~~~glfsFd~~yRP--vpL~~~~iG~k~~~~~~~~~~~ 334 (1230)
T KOG0952|consen 258 LETIVARTLRLVESSQSMIRIVGLSATLPNYEDV-ARFLRVNPYAGLFSFDQRYRP--VPLTQGFIGIKGKKNRQQKKNI 334 (1230)
T ss_pred HHHHHHHHHHHHHhhhhheEEEEeeccCCCHHHH-HHHhcCCCccceeeecccccc--cceeeeEEeeecccchhhhhhH
Confidence 888876543 457899999999985443 33222222 23334433322 2344444433322 1111
Q ss_pred ---HHHHHHHhcccCCcEEEEecChhhHHHHHHHHHhC-----------------------CCceEEeCCCCCHHHHHHH
Q psy16633 255 ---ILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQF-----------------------KISTCVLNSELPAKARCHA 308 (540)
Q Consensus 255 ---~l~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~-----------------------~~~~~~l~~~l~~~~r~~i 308 (540)
....+.+....+.+++|||.++..+-+.+..|.+. ..+.+++|+||...+|..+
T Consensus 335 d~~~~~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~ 414 (1230)
T KOG0952|consen 335 DEVCYDKVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLV 414 (1230)
T ss_pred HHHHHHHHHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHH
Confidence 12222333345679999999999988888877643 1256789999999999999
Q ss_pred HHHHhcCCccEEEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEe-----CCCCC------Ccccchhcc
Q psy16633 309 VYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVIN-----FDFPL------DIQCYIHRA 377 (540)
Q Consensus 309 ~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~-----~d~p~------s~~~yiqr~ 377 (540)
...|..|.++||+||. +++.|+++|+- +||. ||.-. +.-+.+|..
T Consensus 415 E~~F~~G~i~vL~cTa-----------------------TLAwGVNLPA~-aViIKGT~~ydsskg~f~dlgilDVlQif 470 (1230)
T KOG0952|consen 415 EKEFKEGHIKVLCCTA-----------------------TLAWGVNLPAY-AVIIKGTQVYDSSKGSFVDLGILDVLQIF 470 (1230)
T ss_pred HHHHhcCCceEEEecc-----------------------eeeeccCCcce-EEEecCCcccccccCceeeehHHHHHHHH
Confidence 9999999999999999 99999999964 4554 33322 345568999
Q ss_pred ccccCCC--CCceEEEEecccccc
Q psy16633 378 GRTARGK--NQGTALSFVSLREQD 399 (540)
Q Consensus 378 GRagR~g--~~g~~i~~~~~~e~~ 399 (540)
|||||-+ ..|.++.+.+.+...
T Consensus 471 GRAGRPqFd~~G~giIiTt~dkl~ 494 (1230)
T KOG0952|consen 471 GRAGRPQFDSSGEGIIITTRDKLD 494 (1230)
T ss_pred hccCCCCCCCCceEEEEecccHHH
Confidence 9999965 568888887765543
No 84
>PRK09694 helicase Cas3; Provisional
Probab=99.97 E-value=2e-29 Score=278.15 Aligned_cols=313 Identities=19% Similarity=0.181 Sum_probs=205.0
Q ss_pred CChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcC
Q psy16633 40 EPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCS 119 (540)
Q Consensus 40 ~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~ 119 (540)
+|+|+|+.+......+.-+++.||||+|||.+++..+.. +... ....+++|..||+++++|+++.+..+.....
T Consensus 286 ~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~-l~~~-----~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f 359 (878)
T PRK09694 286 QPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWR-LIDQ-----GLADSIIFALPTQATANAMLSRLEALASKLF 359 (878)
T ss_pred CChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHH-HHHh-----CCCCeEEEECcHHHHHHHHHHHHHHHHHHhc
Confidence 799999988655445567999999999999997776553 3321 3457899999999999999999987655432
Q ss_pred CCceEEEeecCcccccc---------------------hhhhh---C---CCCEEEEChHHHHHHHhcCcCCccC----C
Q psy16633 120 RDVKCVDISEQVDVSVQ---------------------EPLLV---E---RPDIVVATPARALAHLKAKTLDLKS----S 168 (540)
Q Consensus 120 ~~i~~~~~~~~~~~~~~---------------------~~~l~---~---~~~Ivv~Tp~~l~~~l~~~~~~~~~----~ 168 (540)
...++....|....... ...+. + -.+|+|||+.+++...-.....+.. .
T Consensus 360 ~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La 439 (878)
T PRK09694 360 PSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLG 439 (878)
T ss_pred CCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhc
Confidence 23344444443321100 01111 1 2689999999987544332211112 2
Q ss_pred ccEEEEcCccccccCCcHHHHHHHHHhCC-cccceeeEeeeccHHHHH-HHHHhcCC---------CeEEEecCC---CC
Q psy16633 169 LEIVIIDEADLVFSFGYEDDMKAVLKFLP-KLYQAILASATLSEDVLS-LKHLILRN---------PVILKLEEP---AI 234 (540)
Q Consensus 169 l~~lViDEah~l~~~~~~~~l~~i~~~l~-~~~q~il~SATl~~~~~~-~~~~~l~~---------p~~i~~~~~---~~ 234 (540)
-++|||||+|.+ +.-....+..+++.+. ....+|+||||+|..... +...+-.. |.+...... ..
T Consensus 440 ~svvIiDEVHAy-D~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~ 518 (878)
T PRK09694 440 RSVLIVDEVHAY-DAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRF 518 (878)
T ss_pred cCeEEEechhhC-CHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccceee
Confidence 358999999955 3323344555555543 356799999999987764 33322111 111000000 00
Q ss_pred ---------CCCCCeEEEEEEcCc-ccHHHHHHHHHHhcccCCcEEEEecChhhHHHHHHHHHhCC---CceEEeCCCCC
Q psy16633 235 ---------APVSQLAHYHILAQE-DEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFK---ISTCVLNSELP 301 (540)
Q Consensus 235 ---------~~~~~l~~~~~~~~~-~~k~~~l~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~---~~~~~l~~~l~ 301 (540)
.....+.-....... .....++..+++....+++++|||||++.|..++..|++.+ ..+..+||.++
T Consensus 519 ~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~ 598 (878)
T PRK09694 519 DLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFT 598 (878)
T ss_pred eccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCC
Confidence 000001000011111 22234455555443456789999999999999999998764 67999999999
Q ss_pred HHHHH----HHHHHH-hcCC---ccEEEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEeCCCCCCcccc
Q psy16633 302 AKARC----HAVYQF-NQGL---YDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCY 373 (540)
Q Consensus 302 ~~~r~----~i~~~F-~~g~---~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~y 373 (540)
..+|. .+++.| ++|. ..|||||+ ++++|+|+ +++++|....| .++|
T Consensus 599 ~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQ-----------------------ViE~GLDI-d~DvlItdlaP--idsL 652 (878)
T PRK09694 599 LNDRREKEQRVIENFGKNGKRNQGRILVATQ-----------------------VVEQSLDL-DFDWLITQLCP--VDLL 652 (878)
T ss_pred HHHHHHHHHHHHHHHHhcCCcCCCeEEEECc-----------------------chhheeec-CCCeEEECCCC--HHHH
Confidence 99994 567788 5565 47999999 99999999 58999998888 6799
Q ss_pred hhccccccCCCC
Q psy16633 374 IHRAGRTARGKN 385 (540)
Q Consensus 374 iqr~GRagR~g~ 385 (540)
+||+||++|.+.
T Consensus 653 iQRaGR~~R~~~ 664 (878)
T PRK09694 653 FQRLGRLHRHHR 664 (878)
T ss_pred HHHHhccCCCCC
Confidence 999999999875
No 85
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.97 E-value=2.1e-29 Score=284.05 Aligned_cols=328 Identities=16% Similarity=0.163 Sum_probs=224.0
Q ss_pred HCCCCCChHHHH---HHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHH
Q psy16633 35 KLGWLEPTLIQE---RAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNI 111 (540)
Q Consensus 35 ~~g~~~pt~~Q~---~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l 111 (540)
...|...-|+.+ +.+..+..+..++|.|+||||||. .+|.+ ++... .....++++.-|.|--|..+++.+
T Consensus 59 ~~~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTT--qlPq~--lle~~---~~~~~~I~~tQPRRlAA~svA~Rv 131 (1283)
T TIGR01967 59 EIRYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTT--QLPKI--CLELG---RGSHGLIGHTQPRRLAARTVAQRI 131 (1283)
T ss_pred cccCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHH--HHHHH--HHHcC---CCCCceEecCCccHHHHHHHHHHH
Confidence 446665556654 344555556778999999999998 56744 22211 122347777889998888877766
Q ss_pred HHHHhhcCCCceEEEeecC-cccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCcc-ccccCCcHHH-
Q psy16633 112 QELTMKCSRDVKCVDISEQ-VDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEAD-LVFSFGYEDD- 188 (540)
Q Consensus 112 ~~l~~~~~~~i~~~~~~~~-~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah-~l~~~~~~~~- 188 (540)
..... ..++...|- ..... .....+.|.|+|+|+|+..+..... + +.+++||||||| +.++.++...
T Consensus 132 A~elg-----~~lG~~VGY~vR~~~---~~s~~T~I~~~TdGiLLr~l~~d~~-L-~~~~~IIIDEaHERsL~~D~LL~l 201 (1283)
T TIGR01967 132 AEELG-----TPLGEKVGYKVRFHD---QVSSNTLVKLMTDGILLAETQQDRF-L-SRYDTIIIDEAHERSLNIDFLLGY 201 (1283)
T ss_pred HHHhC-----CCcceEEeeEEcCCc---ccCCCceeeeccccHHHHHhhhCcc-c-ccCcEEEEcCcchhhccchhHHHH
Confidence 65432 111111121 11111 1235678999999999999877643 3 899999999999 5777776643
Q ss_pred HHHHHHhCCcccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcCc------ccHHHHHHHHHHh
Q psy16633 189 MKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQE------DEKATILYTLLKL 262 (540)
Q Consensus 189 l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~------~~k~~~l~~ll~~ 262 (540)
+..++...+ ..|+|+||||++. ..+...+...|+ +.+.....+ +..+|..... .++...+...+..
T Consensus 202 Lk~il~~rp-dLKlIlmSATld~--~~fa~~F~~apv-I~V~Gr~~P----Vev~Y~~~~~~~~~~~~~~~~~i~~~I~~ 273 (1283)
T TIGR01967 202 LKQLLPRRP-DLKIIITSATIDP--ERFSRHFNNAPI-IEVSGRTYP----VEVRYRPLVEEQEDDDLDQLEAILDAVDE 273 (1283)
T ss_pred HHHHHhhCC-CCeEEEEeCCcCH--HHHHHHhcCCCE-EEECCCccc----ceeEEecccccccchhhhHHHHHHHHHHH
Confidence 555554443 6799999999975 456666655554 444433222 3334443321 1222222222221
Q ss_pred --cccCCcEEEEecChhhHHHHHHHHHhCC---CceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCccccccc
Q psy16633 263 --NLVQGKTIIFVNTVDKCYKLKLYLEQFK---ISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTN 337 (540)
Q Consensus 263 --~~~~~k~IIF~~s~~~~~~l~~~L~~~~---~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~ 337 (540)
....|.+|||+++..+++.++..|++.+ +.+..+||+|++.+|..+++.+ +..+|+||||
T Consensus 274 l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATN------------- 338 (1283)
T TIGR01967 274 LFAEGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATN------------- 338 (1283)
T ss_pred HHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEecc-------------
Confidence 1245899999999999999999998864 4578899999999999997654 3469999999
Q ss_pred ccccccCccccccccCCCCCcCEEEeCCCC------------------CCcccchhccccccCCCCCceEEEEecccccc
Q psy16633 338 NRKRKRDKESGVSRGIDFQFVSNVINFDFP------------------LDIQCYIHRAGRTARGKNQGTALSFVSLREQD 399 (540)
Q Consensus 338 ~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p------------------~s~~~yiqr~GRagR~g~~g~~i~~~~~~e~~ 399 (540)
++++|||+|+|++||++|++ .|..+|.||+|||||.+ +|.|+.+++..+..
T Consensus 339 ----------IAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~~ 407 (1283)
T TIGR01967 339 ----------VAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDFN 407 (1283)
T ss_pred ----------HHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHHH
Confidence 89999999999999999854 35679999999999997 99999999987766
Q ss_pred ccccccchhhhhhh
Q psy16633 400 LMNDGTALSFVSLR 413 (540)
Q Consensus 400 ~~~~~~~~~~~~~~ 413 (540)
.+......++....
T Consensus 408 ~~~~~~~PEIlR~~ 421 (1283)
T TIGR01967 408 SRPEFTDPEILRTN 421 (1283)
T ss_pred hhhhccCccccccc
Confidence 55554545444443
No 86
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.97 E-value=8.8e-29 Score=274.63 Aligned_cols=321 Identities=18% Similarity=0.200 Sum_probs=209.2
Q ss_pred CChHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhh
Q psy16633 40 EPTLIQERAIPLILQN--KDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMK 117 (540)
Q Consensus 40 ~pt~~Q~~ai~~il~g--kd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~ 117 (540)
.|.|+|..+...++.. ..+++.-.+|.|||.-+.+.+-+.+.. ....++||+||. .|+.||...+...+.
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~------g~~~rvLIVvP~-sL~~QW~~El~~kF~- 223 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLT------GRAERVLILVPE-TLQHQWLVEMLRRFN- 223 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHc------CCCCcEEEEcCH-HHHHHHHHHHHHHhC-
Confidence 5899999998777653 469999999999998765544433322 345689999997 899999988865432
Q ss_pred cCCCceEEEeecCccccc--chhhhhCCCCEEEEChHHHHHHHhc-CcCCccCCccEEEEcCccccccCC--cHHHHHHH
Q psy16633 118 CSRDVKCVDISEQVDVSV--QEPLLVERPDIVVATPARALAHLKA-KTLDLKSSLEIVIIDEADLVFSFG--YEDDMKAV 192 (540)
Q Consensus 118 ~~~~i~~~~~~~~~~~~~--~~~~l~~~~~Ivv~Tp~~l~~~l~~-~~~~~~~~l~~lViDEah~l~~~~--~~~~l~~i 192 (540)
+....+.++..... .........+++|+|.+.+...-.. ..+. ...++++|+||||++-... -......+
T Consensus 224 ----l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~-~~~wdlvIvDEAH~lk~~~~~~s~~y~~v 298 (956)
T PRK04914 224 ----LRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQAL-AAEWDLLVVDEAHHLVWSEEAPSREYQVV 298 (956)
T ss_pred ----CCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHh-hcCCCEEEEechhhhccCCCCcCHHHHHH
Confidence 22232322211100 0001112468999998877642111 1111 1578999999999986311 11122222
Q ss_pred HHhCCcccceeeEeeeccH-HH------------------HHHHH------------------------------HhcC-
Q psy16633 193 LKFLPKLYQAILASATLSE-DV------------------LSLKH------------------------------LILR- 222 (540)
Q Consensus 193 ~~~l~~~~q~il~SATl~~-~~------------------~~~~~------------------------------~~l~- 222 (540)
.........++++|||+-. .. ..+.. ..+.
T Consensus 299 ~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~ 378 (956)
T PRK04914 299 EQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGE 378 (956)
T ss_pred HHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcc
Confidence 2222234578999999731 00 00000 0000
Q ss_pred ----------------------------------CCeEEEecCCCC--CCCCCeEEEEEEc-------------------
Q psy16633 223 ----------------------------------NPVILKLEEPAI--APVSQLAHYHILA------------------- 247 (540)
Q Consensus 223 ----------------------------------~p~~i~~~~~~~--~~~~~l~~~~~~~------------------- 247 (540)
..+.++-..... .+...+..+.+..
T Consensus 379 ~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~ 458 (956)
T PRK04914 379 QDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDM 458 (956)
T ss_pred cchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhh
Confidence 001111000000 0000111111101
Q ss_pred -----------------CcccHHHHHHHHHHhcccCCcEEEEecChhhHHHHHHHH-HhCCCceEEeCCCCCHHHHHHHH
Q psy16633 248 -----------------QEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYL-EQFKISTCVLNSELPAKARCHAV 309 (540)
Q Consensus 248 -----------------~~~~k~~~l~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L-~~~~~~~~~l~~~l~~~~r~~i~ 309 (540)
..+.|...+..+++.. ...|+||||+++..+..+...| ...|+++..+||+|++.+|..++
T Consensus 459 l~pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~-~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~ 537 (956)
T PRK04914 459 LYPEQIYQEFEDNATWWNFDPRVEWLIDFLKSH-RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAA 537 (956)
T ss_pred cCHHHHHHHHhhhhhccccCHHHHHHHHHHHhc-CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHH
Confidence 1123455666666643 3679999999999999999999 56799999999999999999999
Q ss_pred HHHhcC--CccEEEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCc
Q psy16633 310 YQFNQG--LYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQG 387 (540)
Q Consensus 310 ~~F~~g--~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g 387 (540)
+.|+++ ..+|||||+ +.++|+|++.+++|||||+|+++..|.||+||++|.|++|
T Consensus 538 ~~F~~~~~~~~VLIsTd-----------------------vgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~ 594 (956)
T PRK04914 538 AYFADEEDGAQVLLCSE-----------------------IGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKH 594 (956)
T ss_pred HHHhcCCCCccEEEech-----------------------hhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCc
Confidence 999984 699999999 8999999999999999999999999999999999999999
Q ss_pred eEEEEecccc
Q psy16633 388 TALSFVSLRE 397 (540)
Q Consensus 388 ~~i~~~~~~e 397 (540)
.+.+++...+
T Consensus 595 ~V~i~~~~~~ 604 (956)
T PRK04914 595 DIQIHVPYLE 604 (956)
T ss_pred eEEEEEccCC
Confidence 8777775443
No 87
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.97 E-value=1.2e-29 Score=239.80 Aligned_cols=200 Identities=40% Similarity=0.583 Sum_probs=177.9
Q ss_pred cCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcH
Q psy16633 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSK 101 (540)
Q Consensus 22 ~~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~ 101 (540)
++++++.+.+.+.++|+..|+++|+++++.+.+|+++++.+|||+|||++|++|+++.+.... ...+.+++|++|++
T Consensus 3 ~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~---~~~~~~viii~p~~ 79 (203)
T cd00268 3 ELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP---KKDGPQALILAPTR 79 (203)
T ss_pred cCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc---ccCCceEEEEcCCH
Confidence 477899999999999999999999999999999999999999999999999999999987632 13578999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccc
Q psy16633 102 ELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVF 181 (540)
Q Consensus 102 ~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~ 181 (540)
+|+.|+...+..+.... ++.+..+.|+.........+..+++|+|+||+.+.+++.+....+ ..++++|+||+|.+.
T Consensus 80 ~L~~q~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~-~~l~~lIvDE~h~~~ 156 (203)
T cd00268 80 ELALQIAEVARKLGKHT--NLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDL-SKVKYLVLDEADRML 156 (203)
T ss_pred HHHHHHHHHHHHHhccC--CceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCCh-hhCCEEEEeChHHhh
Confidence 99999999999987654 677778888777655555555688999999999999998877666 889999999999999
Q ss_pred cCCcHHHHHHHHHhCCcccceeeEeeeccHHHHHHHHHhcCCCeEE
Q psy16633 182 SFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVIL 227 (540)
Q Consensus 182 ~~~~~~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i 227 (540)
+.++...+..+...++..+|++++|||+++.+..+...++.+|..+
T Consensus 157 ~~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 157 DMGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred ccChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 8889999999999999999999999999999999999999988765
No 88
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.97 E-value=3e-28 Score=253.20 Aligned_cols=324 Identities=18% Similarity=0.225 Sum_probs=243.4
Q ss_pred CCCCHHHHH-HHHHCCCCCChHHHHHHHHHHhcC------CcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEE
Q psy16633 23 FTLFCIPLQ-AIAKLGWLEPTLIQERAIPLILQN------KDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKAL 95 (540)
Q Consensus 23 ~~L~~~i~~-~l~~~g~~~pt~~Q~~ai~~il~g------kd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vl 95 (540)
+..+..+++ .+..+.| ++|..|++++..|... .+-++++.-|||||++++++++..+ ..|.++.
T Consensus 245 ~~~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai--------~~G~Q~A 315 (677)
T COG1200 245 LPANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAI--------EAGYQAA 315 (677)
T ss_pred CCccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHH--------HcCCeeE
Confidence 344555444 5577899 8999999999999874 3579999999999999999999887 5689999
Q ss_pred EEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchh----hhhCCCCEEEEChHHHHHHHhcCcCCccCCccE
Q psy16633 96 VLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEP----LLVERPDIVVATPARALAHLKAKTLDLKSSLEI 171 (540)
Q Consensus 96 il~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~----~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~ 171 (540)
..+||--||.|.++.+.+++... ++++..++|......... ...+..+|+|+|..-+ ...+.+ .++.+
T Consensus 316 LMAPTEILA~QH~~~~~~~l~~~--~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALi-----Qd~V~F-~~LgL 387 (677)
T COG1200 316 LMAPTEILAEQHYESLRKWLEPL--GIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALI-----QDKVEF-HNLGL 387 (677)
T ss_pred EeccHHHHHHHHHHHHHHHhhhc--CCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhh-----hcceee-cceeE
Confidence 99999999999999999999887 588888888776554443 3345699999995433 445566 89999
Q ss_pred EEEcCccccccCCcHHHHHHHHHhCCc-ccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCC-CCeEEEEEEcCc
Q psy16633 172 VIIDEADLVFSFGYEDDMKAVLKFLPK-LYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPV-SQLAHYHILAQE 249 (540)
Q Consensus 172 lViDEah~l~~~~~~~~l~~i~~~l~~-~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~-~~l~~~~~~~~~ 249 (540)
+|+||-|++ | -.=+..+..... ...++.||||+-+..-.+....--+ +..+++- +.. ..+.-+.+ ..
T Consensus 388 VIiDEQHRF---G--V~QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt~fgDld--vS~IdEl--P~GRkpI~T~~i--~~ 456 (677)
T COG1200 388 VIIDEQHRF---G--VHQRLALREKGEQNPHVLVMTATPIPRTLALTAFGDLD--VSIIDEL--PPGRKPITTVVI--PH 456 (677)
T ss_pred EEEeccccc---c--HHHHHHHHHhCCCCCcEEEEeCCCchHHHHHHHhcccc--chhhccC--CCCCCceEEEEe--cc
Confidence 999999943 3 222333333333 5789999999887655444433222 2222221 121 23443433 33
Q ss_pred ccHHHHHHHHHHhcccCCcEEEEecChhh--------HHHHHHHHHhC--CCceEEeCCCCCHHHHHHHHHHHhcCCccE
Q psy16633 250 DEKATILYTLLKLNLVQGKTIIFVNTVDK--------CYKLKLYLEQF--KISTCVLNSELPAKARCHAVYQFNQGLYDV 319 (540)
Q Consensus 250 ~~k~~~l~~ll~~~~~~~k~IIF~~s~~~--------~~~l~~~L~~~--~~~~~~l~~~l~~~~r~~i~~~F~~g~~~i 319 (540)
+.+..++..+.+....+.++.+.|+-+++ |..++..|... +.++..+||.|+..++..+++.|++|+++|
T Consensus 457 ~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~I 536 (677)
T COG1200 457 ERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDI 536 (677)
T ss_pred ccHHHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcE
Confidence 44555555555444456789999987765 44556666643 567999999999999999999999999999
Q ss_pred EEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEeCCCCC-CcccchhccccccCCCCCceEEEEecccc
Q psy16633 320 IIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPL-DIQCYIHRAGRTARGKNQGTALSFVSLRE 397 (540)
Q Consensus 320 LIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~-s~~~yiqr~GRagR~g~~g~~i~~~~~~e 397 (540)
||||. +++.|||+|+.++.|..|.-. -.++.-|-.||+||++....|++++.+..
T Consensus 537 LVaTT-----------------------VIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 537 LVATT-----------------------VIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred EEEee-----------------------EEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 99999 899999999999988877643 57888899999999999999999998665
No 89
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.96 E-value=4.8e-28 Score=256.24 Aligned_cols=289 Identities=18% Similarity=0.185 Sum_probs=191.6
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCccccc---
Q psy16633 59 LVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSV--- 135 (540)
Q Consensus 59 li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~--- 135 (540)
++.|+||||||.+|+..+...+ . .+.++||++|+++|+.|+++.+++.+ +..+..+.++.....
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l-~-------~g~~vLvlvP~i~L~~Q~~~~l~~~f-----~~~v~vlhs~~~~~er~~ 67 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVL-A-------LGKSVLVLVPEIALTPQMIQRFKYRF-----GSQVAVLHSGLSDSEKLQ 67 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHH-H-------cCCeEEEEeCcHHHHHHHHHHHHHHh-----CCcEEEEECCCCHHHHHH
Confidence 4689999999999876554443 2 47789999999999999999998764 234455665544332
Q ss_pred -chhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCC-----cH-HHHHHHHHhCCcccceeeEeee
Q psy16633 136 -QEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFG-----YE-DDMKAVLKFLPKLYQAILASAT 208 (540)
Q Consensus 136 -~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~-----~~-~~l~~i~~~l~~~~q~il~SAT 208 (540)
+.....+.++|||+|+..+. .. +.++++|||||+|...-++ |. .++....... .+.+++++|||
T Consensus 68 ~~~~~~~g~~~IVVGTrsalf-------~p-~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~-~~~~vil~SAT 138 (505)
T TIGR00595 68 AWRKVKNGEILVVIGTRSALF-------LP-FKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKK-FNCPVVLGSAT 138 (505)
T ss_pred HHHHHHcCCCCEEECChHHHc-------Cc-ccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHh-cCCCEEEEeCC
Confidence 22334457899999998763 12 3789999999999655322 11 2233333333 46799999999
Q ss_pred ccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcCcccH-----HHHHHHHHHhcccCCcEEEEecChhh-----
Q psy16633 209 LSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEK-----ATILYTLLKLNLVQGKTIIFVNTVDK----- 278 (540)
Q Consensus 209 l~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~~~k-----~~~l~~ll~~~~~~~k~IIF~~s~~~----- 278 (540)
++.+....... .....+.+...... ........+......+ ..++..+.+....++++|||+|++..
T Consensus 139 Psles~~~~~~--g~~~~~~l~~r~~~-~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~ 215 (505)
T TIGR00595 139 PSLESYHNAKQ--KAYRLLVLTRRVSG-RKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLL 215 (505)
T ss_pred CCHHHHHHHhc--CCeEEeechhhhcC-CCCCeEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeE
Confidence 87554333321 11122222211100 0001111111111110 12333333333345689999877542
Q ss_pred -------------------------------------------------------HHHHHHHHHhC--CCceEEeCCCCC
Q psy16633 279 -------------------------------------------------------CYKLKLYLEQF--KISTCVLNSELP 301 (540)
Q Consensus 279 -------------------------------------------------------~~~l~~~L~~~--~~~~~~l~~~l~ 301 (540)
.+++.+.|.+. +.++..+|++++
T Consensus 216 C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~ 295 (505)
T TIGR00595 216 CRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTT 295 (505)
T ss_pred hhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccc
Confidence 47777888775 678999999998
Q ss_pred HHHH--HHHHHHHhcCCccEEEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEE--eCCCCC---------
Q psy16633 302 AKAR--CHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVI--NFDFPL--------- 368 (540)
Q Consensus 302 ~~~r--~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi--~~d~p~--------- 368 (540)
...+ ..+++.|.+|+.+|||+|+ ++++|+|+|+|++|+ ++|...
T Consensus 296 ~~~~~~~~~l~~f~~g~~~ILVgT~-----------------------~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E 352 (505)
T TIGR00595 296 SRKGAHEALLNQFANGKADILIGTQ-----------------------MIAKGHHFPNVTLVGVLDADSGLHSPDFRAAE 352 (505)
T ss_pred cCccHHHHHHHHHhcCCCCEEEeCc-----------------------ccccCCCCCcccEEEEEcCcccccCcccchHH
Confidence 7766 8899999999999999999 999999999999875 666532
Q ss_pred -CcccchhccccccCCCCCceEEEEecc
Q psy16633 369 -DIQCYIHRAGRTARGKNQGTALSFVSL 395 (540)
Q Consensus 369 -s~~~yiqr~GRagR~g~~g~~i~~~~~ 395 (540)
....|+|++||+||++..|.++.....
T Consensus 353 ~~~~ll~q~~GRagR~~~~g~viiqt~~ 380 (505)
T TIGR00595 353 RGFQLLTQVAGRAGRAEDPGQVIIQTYN 380 (505)
T ss_pred HHHHHHHHHHhccCCCCCCCEEEEEeCC
Confidence 245689999999999999998865543
No 90
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.96 E-value=3.3e-28 Score=254.49 Aligned_cols=299 Identities=19% Similarity=0.242 Sum_probs=204.0
Q ss_pred CChHHHHHHHHHHhc----CCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHH
Q psy16633 40 EPTLIQERAIPLILQ----NKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELT 115 (540)
Q Consensus 40 ~pt~~Q~~ai~~il~----gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~ 115 (540)
.|+++|++|+..+.+ ++..++.+|||+|||.+++-.+- .+ +.++|||||+++|+.||.+.+....
T Consensus 36 ~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~-~~----------~~~~Lvlv~~~~L~~Qw~~~~~~~~ 104 (442)
T COG1061 36 ELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIA-EL----------KRSTLVLVPTKELLDQWAEALKKFL 104 (442)
T ss_pred CCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHH-Hh----------cCCEEEEECcHHHHHHHHHHHHHhc
Confidence 699999999999998 88999999999999987654433 22 2339999999999999998777765
Q ss_pred hhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCCcHHHHHHHHHh
Q psy16633 116 MKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKF 195 (540)
Q Consensus 116 ~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~ 195 (540)
.. ......+.|+..... . ..|.|+|.+.+...-....+.. ..+++||+||||++.+..+... ...
T Consensus 105 ~~---~~~~g~~~~~~~~~~------~-~~i~vat~qtl~~~~~l~~~~~-~~~~liI~DE~Hh~~a~~~~~~----~~~ 169 (442)
T COG1061 105 LL---NDEIGIYGGGEKELE------P-AKVTVATVQTLARRQLLDEFLG-NEFGLIIFDEVHHLPAPSYRRI----LEL 169 (442)
T ss_pred CC---ccccceecCceeccC------C-CcEEEEEhHHHhhhhhhhhhcc-cccCEEEEEccccCCcHHHHHH----HHh
Confidence 32 122333333322110 1 4699999988766421111121 4799999999999987665533 333
Q ss_pred CCcccceeeEeeeccHHH-HHHHH-HhcCCCeEEEecCCCCCC---CCCeEEEEEEcC----------------------
Q psy16633 196 LPKLYQAILASATLSEDV-LSLKH-LILRNPVILKLEEPAIAP---VSQLAHYHILAQ---------------------- 248 (540)
Q Consensus 196 l~~~~q~il~SATl~~~~-~~~~~-~~l~~p~~i~~~~~~~~~---~~~l~~~~~~~~---------------------- 248 (540)
+......+++|||++... ..... ..+..|.+....-.+... ......+.+.+.
T Consensus 170 ~~~~~~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~ 249 (442)
T COG1061 170 LSAAYPRLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRA 249 (442)
T ss_pred hhcccceeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhh
Confidence 332222899999976322 11111 111123333332111000 001111111111
Q ss_pred ----------------cccHHHHHHHHHHhcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHH
Q psy16633 249 ----------------EDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQF 312 (540)
Q Consensus 249 ----------------~~~k~~~l~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F 312 (540)
...+...+..++.......+++||+.++..++.++..+...++ +..+.++.+..+|..+++.|
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~f 328 (442)
T COG1061 250 RGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERF 328 (442)
T ss_pred hhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHH
Confidence 1112222233333222355999999999999999999988887 88999999999999999999
Q ss_pred hcCCccEEEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccC-CCCCce
Q psy16633 313 NQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTAR-GKNQGT 388 (540)
Q Consensus 313 ~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR-~g~~g~ 388 (540)
+.|.+++||++. ++.+|+|+|+++++|......|...|+||+||.-| ...++.
T Consensus 329 r~g~~~~lv~~~-----------------------vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~ 382 (442)
T COG1061 329 RTGGIKVLVTVK-----------------------VLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKED 382 (442)
T ss_pred HcCCCCEEEEee-----------------------eccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCc
Confidence 999999999999 99999999999999999999999999999999999 333443
No 91
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=2.5e-27 Score=255.71 Aligned_cols=148 Identities=14% Similarity=0.201 Sum_probs=129.3
Q ss_pred cCCCCHHHHHHHH-----HCCCCCC---hHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeE
Q psy16633 22 TFTLFCIPLQAIA-----KLGWLEP---TLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETK 93 (540)
Q Consensus 22 ~~~L~~~i~~~l~-----~~g~~~p---t~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~ 93 (540)
+|++.+.+.+.+. ..||..| ||+|.++||.++.++++++.|+||+|||++|++|++..++. +..
T Consensus 66 afal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~--------g~~ 137 (970)
T PRK12899 66 AYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT--------GKP 137 (970)
T ss_pred HhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh--------cCC
Confidence 7888999888887 6899999 99999999999999999999999999999999999988764 224
Q ss_pred EEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHH-HHHHhcCcCCcc------
Q psy16633 94 ALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARA-LAHLKAKTLDLK------ 166 (540)
Q Consensus 94 vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l-~~~l~~~~~~~~------ 166 (540)
++|++||++||.|..+.+..+.... ++++..+.|+.+...+...+ .++|+|+||++| .++++.+.+.+.
T Consensus 138 v~IVTpTrELA~Qdae~m~~L~k~l--GLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~vq 213 (970)
T PRK12899 138 VHLVTVNDYLAQRDCEWVGSVLRWL--GLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRKEEQVG 213 (970)
T ss_pred eEEEeCCHHHHHHHHHHHHHHHhhc--CCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCHHHhhc
Confidence 8899999999999999999999877 68888889988877766554 599999999999 999988755541
Q ss_pred CCccEEEEcCccccc
Q psy16633 167 SSLEIVIIDEADLVF 181 (540)
Q Consensus 167 ~~l~~lViDEah~l~ 181 (540)
+.+.++||||||.|+
T Consensus 214 r~~~~~IIDEADsmL 228 (970)
T PRK12899 214 RGFYFAIIDEVDSIL 228 (970)
T ss_pred ccccEEEEechhhhh
Confidence 356899999999876
No 92
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=2.9e-27 Score=255.87 Aligned_cols=319 Identities=15% Similarity=0.169 Sum_probs=218.3
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHH
Q psy16633 36 LGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELT 115 (540)
Q Consensus 36 ~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~ 115 (540)
+|. .|.++|--.--.+. +.-++.++||+|||++|.+|++..++. +..++|++||++||.|.++.+..+.
T Consensus 79 lg~-~~ydvQliGg~~Lh--~G~Iaem~TGeGKTL~a~Lpa~~~al~--------G~~V~VvTpn~yLA~qd~e~m~~l~ 147 (896)
T PRK13104 79 LGL-RHFDVQLIGGMVLH--EGNIAEMRTGEGKTLVATLPAYLNAIS--------GRGVHIVTVNDYLAKRDSQWMKPIY 147 (896)
T ss_pred cCC-CcchHHHhhhhhhc--cCccccccCCCCchHHHHHHHHHHHhc--------CCCEEEEcCCHHHHHHHHHHHHHHh
Confidence 465 67888865544444 445999999999999999999977643 4569999999999999999999999
Q ss_pred hhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHH-HHHHhcCc-CCc----cCCccEEEEcCcccccc-CC----
Q psy16633 116 MKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARA-LAHLKAKT-LDL----KSSLEIVIIDEADLVFS-FG---- 184 (540)
Q Consensus 116 ~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l-~~~l~~~~-~~~----~~~l~~lViDEah~l~~-~~---- 184 (540)
..+ ++++..+.|+.+...+...+ .++|+|+||++| .++++.+. ..+ ...+.++||||||.|+= ..
T Consensus 148 ~~l--GLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPL 223 (896)
T PRK13104 148 EFL--GLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPL 223 (896)
T ss_pred ccc--CceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCce
Confidence 887 68888888887655544433 689999999999 99998763 222 15899999999998651 00
Q ss_pred -----------cHHHHHHHHHhCCc--------------ccceee-----------------------------------
Q psy16633 185 -----------YEDDMKAVLKFLPK--------------LYQAIL----------------------------------- 204 (540)
Q Consensus 185 -----------~~~~l~~i~~~l~~--------------~~q~il----------------------------------- 204 (540)
....+..+...+.. ..+.+.
T Consensus 224 IISg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~ 303 (896)
T PRK13104 224 IISGAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMH 303 (896)
T ss_pred eeeCCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHH
Confidence 11112222222211 011111
Q ss_pred --------------------------------------------------------------------------------
Q psy16633 205 -------------------------------------------------------------------------------- 204 (540)
Q Consensus 205 -------------------------------------------------------------------------------- 204 (540)
T Consensus 304 ~i~~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLs 383 (896)
T PRK13104 304 HVNAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLS 383 (896)
T ss_pred HHHHHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhc
Confidence
Q ss_pred -EeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcCcccHHHHHHH-HHHhcccCCcEEEEecChhhHHHH
Q psy16633 205 -ASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYT-LLKLNLVQGKTIIFVNTVDKCYKL 282 (540)
Q Consensus 205 -~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~-ll~~~~~~~k~IIF~~s~~~~~~l 282 (540)
||.|.......+...+--+- +.+.... +....-..-.+......|+..+.. +......+.|+||||+|++.++.+
T Consensus 384 GMTGTa~te~~Ef~~iY~l~V--v~IPtnk-p~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~l 460 (896)
T PRK13104 384 GMTGTADTEAYEFQQIYNLEV--VVIPTNR-SMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFL 460 (896)
T ss_pred cCCCCChhHHHHHHHHhCCCE--EECCCCC-CcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHH
Confidence 22222111111111111100 0000000 000000001233344556655444 444456677999999999999999
Q ss_pred HHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccccccccccCccccccccCCCCCc----
Q psy16633 283 KLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFV---- 358 (540)
Q Consensus 283 ~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v---- 358 (540)
+..|.+.|+++.++|+.+.+.++..+.+.|+.| .|+|||| +++||+|+.=-
T Consensus 461 s~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G--~VtIATN-----------------------mAGRGtDI~Lggn~~ 515 (896)
T PRK13104 461 SQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPG--AVTIATN-----------------------MAGRGTDIVLGGSLA 515 (896)
T ss_pred HHHHHHcCCCeEeecCCCChHHHHHHHhCCCCC--cEEEecc-----------------------CccCCcceecCCchh
Confidence 999999999999999999999999999999999 4999999 99999998611
Q ss_pred ----------------------------------CEEEeCCCCCCcccchhccccccCCCCCceEEEEecccc
Q psy16633 359 ----------------------------------SNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLRE 397 (540)
Q Consensus 359 ----------------------------------~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e 397 (540)
=+||-...+.|..-=-|-.||+||-|.+|.+-.|++-+|
T Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD 588 (896)
T PRK13104 516 ADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 588 (896)
T ss_pred hhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 156666667776666799999999999999999998554
No 93
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.96 E-value=1.2e-26 Score=253.72 Aligned_cols=324 Identities=21% Similarity=0.227 Sum_probs=251.4
Q ss_pred cCCCCHHHHHHHHH-CCCCCChHHHHHHHHHHhc----C--CcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEE
Q psy16633 22 TFTLFCIPLQAIAK-LGWLEPTLIQERAIPLILQ----N--KDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKA 94 (540)
Q Consensus 22 ~~~L~~~i~~~l~~-~g~~~pt~~Q~~ai~~il~----g--kd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~v 94 (540)
.+..|......+.. ++| .-|+=|..||..+.+ + -|-+|||.-|-|||-+++=+++... ..|.+|
T Consensus 576 af~~d~~~q~~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV--------~~GKQV 646 (1139)
T COG1197 576 AFPPDTEWQEEFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAV--------MDGKQV 646 (1139)
T ss_pred CCCCChHHHHHHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHh--------cCCCeE
Confidence 45556666666655 577 789999999999986 3 3799999999999999888877665 568999
Q ss_pred EEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhh----hhCCCCEEEEChHHHHHHHhcCcCCccCCcc
Q psy16633 95 LVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL----LVERPDIVVATPARALAHLKAKTLDLKSSLE 170 (540)
Q Consensus 95 lil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~----l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~ 170 (540)
.|+|||.-||+|.++.++.-+... .+++..++.=...+.+... -.+..||||||..- + +..+.+ .+++
T Consensus 647 AvLVPTTlLA~QHy~tFkeRF~~f--PV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrL----L-~kdv~F-kdLG 718 (1139)
T COG1197 647 AVLVPTTLLAQQHYETFKERFAGF--PVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRL----L-SKDVKF-KDLG 718 (1139)
T ss_pred EEEcccHHhHHHHHHHHHHHhcCC--CeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHh----h-CCCcEE-ecCC
Confidence 999999999999999999987766 6777777654444444433 34688999999432 2 445666 8999
Q ss_pred EEEEcCccccccCCcHHHHHHHHHhCCcccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcCcc
Q psy16633 171 IVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQED 250 (540)
Q Consensus 171 ~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~~ 250 (540)
++||||-|++ | -.-++-++.+..+.-++-||||+-+..-.+.-..+++-.++..... .++.. ...+.+.
T Consensus 719 LlIIDEEqRF---G--Vk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~-----~R~pV-~T~V~~~ 787 (1139)
T COG1197 719 LLIIDEEQRF---G--VKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPE-----DRLPV-KTFVSEY 787 (1139)
T ss_pred eEEEechhhc---C--ccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCC-----CCcce-EEEEecC
Confidence 9999999944 2 2223334445567789999999988887777777777665543322 22211 1223344
Q ss_pred cHHHHHHHHHHhcccCCcEEEEecChhhHHHHHHHHHhC--CCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCcc
Q psy16633 251 EKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQF--KISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL 328 (540)
Q Consensus 251 ~k~~~l~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~--~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~ 328 (540)
+...+-.++++....+|++-..+|.++..+.++..|++. ..++++.||.|+..+-+.++..|.+|+++|||||.
T Consensus 788 d~~~ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TT---- 863 (1139)
T COG1197 788 DDLLIREAILRELLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTT---- 863 (1139)
T ss_pred ChHHHHHHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEee----
Confidence 444455566666667889999999999999999999986 45788999999999999999999999999999999
Q ss_pred CCcccccccccccccCccccccccCCCCCcCEEEeCCCC-CCcccchhccccccCCCCCceEEEEeccc
Q psy16633 329 ETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFP-LDIQCYIHRAGRTARGKNQGTALSFVSLR 396 (540)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p-~s~~~yiqr~GRagR~g~~g~~i~~~~~~ 396 (540)
.++.|||+|+++.+|.-+.- .-.++..|-.||+||.++.+.|+.++.+.
T Consensus 864 -------------------IIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~ 913 (1139)
T COG1197 864 -------------------IIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQ 913 (1139)
T ss_pred -------------------eeecCcCCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEeecCc
Confidence 89999999999998865543 35788899999999999999999999754
No 94
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=9.4e-27 Score=251.78 Aligned_cols=317 Identities=17% Similarity=0.172 Sum_probs=231.5
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHH-HHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHH
Q psy16633 36 LGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMI-QKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQEL 114 (540)
Q Consensus 36 ~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil-~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l 114 (540)
+|. +|+++|--.--.+.+|+ ++.+.||+|||+++.+|++ +.+ .+..+-|++||..||.|.++.+..+
T Consensus 78 lg~-~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL---------~G~~V~IvTpn~yLA~rd~e~~~~l 145 (830)
T PRK12904 78 LGM-RHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNAL---------TGKGVHVVTVNDYLAKRDAEWMGPL 145 (830)
T ss_pred hCC-CCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHH---------cCCCEEEEecCHHHHHHHHHHHHHH
Confidence 576 79999987766665554 9999999999999999996 444 2445779999999999999999999
Q ss_pred HhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHH-HHHHhcCcCC-----ccCCccEEEEcCccccc-cC----
Q psy16633 115 TMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARA-LAHLKAKTLD-----LKSSLEIVIIDEADLVF-SF---- 183 (540)
Q Consensus 115 ~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l-~~~l~~~~~~-----~~~~l~~lViDEah~l~-~~---- 183 (540)
...+ ++++..+.|+.+...+...+ .++|+++||+.| .++++.+... ..+.+.++||||||.|+ |.
T Consensus 146 ~~~L--Glsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtp 221 (830)
T PRK12904 146 YEFL--GLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTP 221 (830)
T ss_pred Hhhc--CCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCc
Confidence 9887 78888999887766655554 589999999999 8888765421 22789999999999865 10
Q ss_pred -----------CcHHHHHHHHHhCCcc-----------------------------------------------------
Q psy16633 184 -----------GYEDDMKAVLKFLPKL----------------------------------------------------- 199 (540)
Q Consensus 184 -----------~~~~~l~~i~~~l~~~----------------------------------------------------- 199 (540)
.....+..+...+...
T Consensus 222 LiiSg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~ 301 (830)
T PRK12904 222 LIISGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELF 301 (830)
T ss_pred eeeECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHH
Confidence 0112222222222110
Q ss_pred ----------------------------------------------------------------cceeeEeeeccHHHHH
Q psy16633 200 ----------------------------------------------------------------YQAILASATLSEDVLS 215 (540)
Q Consensus 200 ----------------------------------------------------------------~q~il~SATl~~~~~~ 215 (540)
..+.+||.|.......
T Consensus 302 ~~d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E 381 (830)
T PRK12904 302 KRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEE 381 (830)
T ss_pred hcCCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHH
Confidence 0244555555544444
Q ss_pred HHHHhcCCCeEEEecCCCCCCCCCeE-EEEEEcCcccHHHHHHHHHHh-cccCCcEEEEecChhhHHHHHHHHHhCCCce
Q psy16633 216 LKHLILRNPVILKLEEPAIAPVSQLA-HYHILAQEDEKATILYTLLKL-NLVQGKTIIFVNTVDKCYKLKLYLEQFKIST 293 (540)
Q Consensus 216 ~~~~~l~~p~~i~~~~~~~~~~~~l~-~~~~~~~~~~k~~~l~~ll~~-~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~ 293 (540)
+...+--+-+.+....+ ..... .-.+.....+|+..+...+.. ...+.++||||+|+..++.++..|.+.|+++
T Consensus 382 ~~~iY~l~vv~IPtnkp----~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~ 457 (830)
T PRK12904 382 FREIYNLDVVVIPTNRP----MIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPH 457 (830)
T ss_pred HHHHhCCCEEEcCCCCC----eeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCce
Confidence 44333222222111110 00011 112344566777777766643 3456699999999999999999999999999
Q ss_pred EEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccccccccccCccccccccCCCCCc---------------
Q psy16633 294 CVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFV--------------- 358 (540)
Q Consensus 294 ~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v--------------- 358 (540)
.++|+. +.+|+..+..|..+...|+|||| +++||+|++=-
T Consensus 458 ~vLnak--q~eREa~Iia~Ag~~g~VtIATN-----------------------mAGRGtDI~LgGn~~~~~~~~~~~~~ 512 (830)
T PRK12904 458 NVLNAK--NHEREAEIIAQAGRPGAVTIATN-----------------------MAGRGTDIKLGGNPEMLAAALLEEET 512 (830)
T ss_pred EeccCc--hHHHHHHHHHhcCCCceEEEecc-----------------------cccCCcCccCCCchhhhhhhhhhhhh
Confidence 999995 88999999999999999999999 99999998632
Q ss_pred -----------------------CEEEeCCCCCCcccchhccccccCCCCCceEEEEecccc
Q psy16633 359 -----------------------SNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLRE 397 (540)
Q Consensus 359 -----------------------~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e 397 (540)
=+||-...|.|..-=-|-.||+||.|.+|.+-.|++-+|
T Consensus 513 ~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD 574 (830)
T PRK12904 513 EEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLED 574 (830)
T ss_pred hHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCc
Confidence 167878888888888899999999999999999998655
No 95
>KOG0951|consensus
Probab=99.95 E-value=4.7e-27 Score=252.98 Aligned_cols=341 Identities=16% Similarity=0.205 Sum_probs=242.1
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHhcCC-cEEEEcCCCchHHHHHHHHHHHHHHhhcccc---cCCCeEEEEEcCc
Q psy16633 25 LFCIPLQAIAKLGWLEPTLIQERAIPLILQNK-DVLVRARTGSGKTGAFAIPMIQKIINLKQTA---QVQETKALVLSPS 100 (540)
Q Consensus 25 L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~gk-d~li~a~TGsGKT~a~~ipil~~l~~~~~~~---~~~~~~vlil~Pt 100 (540)
++.+-..++. |..++.++|....+.++.+. ++++|||||+|||..+++-+|+.+-...... .-...+++|++|.
T Consensus 296 lP~Wnq~aF~--g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPm 373 (1674)
T KOG0951|consen 296 LPKWNQPAFF--GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPM 373 (1674)
T ss_pred Ccchhhhhcc--cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeH
Confidence 3344444442 55669999999999999975 7999999999999999999999986533211 1245689999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcC--cCCccCCccEEEEcCcc
Q psy16633 101 KELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAK--TLDLKSSLEIVIIDEAD 178 (540)
Q Consensus 101 ~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~--~~~~~~~l~~lViDEah 178 (540)
++|++.+...+.+-.... +|.+.-++|+.....+. .....|+||||+.. +.+.++ .....+-++++||||+|
T Consensus 374 KaLvqE~VgsfSkRla~~--GI~V~ElTgD~~l~~~q---ieeTqVIV~TPEK~-DiITRk~gdraY~qlvrLlIIDEIH 447 (1674)
T KOG0951|consen 374 KALVQEMVGSFSKRLAPL--GITVLELTGDSQLGKEQ---IEETQVIVTTPEKW-DIITRKSGDRAYEQLVRLLIIDEIH 447 (1674)
T ss_pred HHHHHHHHHHHHhhcccc--CcEEEEecccccchhhh---hhcceeEEeccchh-hhhhcccCchhHHHHHHHHhhhhhh
Confidence 999999998887766655 79999999986543322 24678999999984 334332 22222568899999999
Q ss_pred ccccCCcHHHHHHHHHhCC-------cccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcCccc
Q psy16633 179 LVFSFGYEDDMKAVLKFLP-------KLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDE 251 (540)
Q Consensus 179 ~l~~~~~~~~l~~i~~~l~-------~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~~~ 251 (540)
++-+ .++..++.|..+.. ..+..+++|||+|+-..--.-+....+.....+.+.. +..+.|.++-+.+..
T Consensus 448 LLhD-dRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~syR--pvPL~qq~Igi~ek~ 524 (1674)
T KOG0951|consen 448 LLHD-DRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSSYR--PVPLKQQYIGITEKK 524 (1674)
T ss_pred hccc-ccchHHHHHHHHHHHHhhhcccCceeeeecccCCchhhhHHHhccCcccccccCcccC--cCCccceEeccccCC
Confidence 6644 46677766655432 3678999999999754322222222233333443322 234677777665443
Q ss_pred HHH-------HHHHHHHhcccCCcEEEEecChhhHHHHHHHHHhC-----------------------------------
Q psy16633 252 KAT-------ILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQF----------------------------------- 289 (540)
Q Consensus 252 k~~-------~l~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~----------------------------------- 289 (540)
... ..+.-+-.+...+++||||-+++++-+.+.+++..
T Consensus 525 ~~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkd 604 (1674)
T KOG0951|consen 525 PLKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKD 604 (1674)
T ss_pred chHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHH
Confidence 222 23332223445589999999998877776666511
Q ss_pred --CCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEe----
Q psy16633 290 --KISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVIN---- 363 (540)
Q Consensus 290 --~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~---- 363 (540)
.++.+++|+||+..+|..+...|..|.++|+|+|- ++++|+++|.-.++|-
T Consensus 605 LLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvsta-----------------------tlawgvnlpahtViikgtqv 661 (1674)
T KOG0951|consen 605 LLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTA-----------------------TLAWGVNLPAHTVIIKGTQV 661 (1674)
T ss_pred HhhccceeeccCCCcchHHHHHHHHhcCceeEEEeeh-----------------------hhhhhcCCCcceEEecCccc
Confidence 23778999999999999999999999999999999 9999999998776663
Q ss_pred CCC------CCCcccchhccccccCCCC--CceEEEEecccccc
Q psy16633 364 FDF------PLDIQCYIHRAGRTARGKN--QGTALSFVSLREQD 399 (540)
Q Consensus 364 ~d~------p~s~~~yiqr~GRagR~g~--~g~~i~~~~~~e~~ 399 (540)
||+ +.++.+.+||.|||||.+. .|.++.+-...+..
T Consensus 662 y~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~~se~q 705 (1674)
T KOG0951|consen 662 YDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQ 705 (1674)
T ss_pred cCcccCccccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhh
Confidence 554 4588999999999999774 46666666555543
No 96
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=8.2e-27 Score=251.25 Aligned_cols=319 Identities=17% Similarity=0.161 Sum_probs=223.7
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHH
Q psy16633 36 LGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELT 115 (540)
Q Consensus 36 ~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~ 115 (540)
+|. .|+++|--.--.+.+|+ ++.+.||+|||+++.+|++-..+ .|..|-+++||--||.|-++.+..+.
T Consensus 77 ~g~-~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al--------~G~~v~vvT~neyLA~Rd~e~~~~~~ 145 (796)
T PRK12906 77 LGL-RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNAL--------TGKGVHVVTVNEYLSSRDATEMGELY 145 (796)
T ss_pred hCC-CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHH--------cCCCeEEEeccHHHHHhhHHHHHHHH
Confidence 476 89999988776666665 99999999999999999887764 57889999999999999999999999
Q ss_pred hhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHH-HHHhcC-----cCCccCCccEEEEcCccccc-cCC----
Q psy16633 116 MKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARAL-AHLKAK-----TLDLKSSLEIVIIDEADLVF-SFG---- 184 (540)
Q Consensus 116 ~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~-~~l~~~-----~~~~~~~l~~lViDEah~l~-~~~---- 184 (540)
..+ ++++..++++......... -.++|+++|...+- +.|+.+ .....+.+.+.||||+|.++ +..
T Consensus 146 ~~L--Gl~vg~i~~~~~~~~r~~~--y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPL 221 (796)
T PRK12906 146 RWL--GLTVGLNLNSMSPDEKRAA--YNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPL 221 (796)
T ss_pred Hhc--CCeEEEeCCCCCHHHHHHH--hcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCce
Confidence 988 6888888876554443333 37899999987642 233321 11122678899999999755 100
Q ss_pred -----------cHHHHHHHHHhCCc--------------------c----------------------------------
Q psy16633 185 -----------YEDDMKAVLKFLPK--------------------L---------------------------------- 199 (540)
Q Consensus 185 -----------~~~~l~~i~~~l~~--------------------~---------------------------------- 199 (540)
....+..+...+.. .
T Consensus 222 iisg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i 301 (796)
T PRK12906 222 IISGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHI 301 (796)
T ss_pred ecCCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHH
Confidence 11111111111110 0
Q ss_pred --------------------------------------------------------------------------cceeeE
Q psy16633 200 --------------------------------------------------------------------------YQAILA 205 (540)
Q Consensus 200 --------------------------------------------------------------------------~q~il~ 205 (540)
.++.+|
T Consensus 302 ~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~Gm 381 (796)
T PRK12906 302 DQALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGM 381 (796)
T ss_pred HHHHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhcc
Confidence 023344
Q ss_pred eeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcCcccHHHHHHHHHH-hcccCCcEEEEecChhhHHHHHH
Q psy16633 206 SATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLK-LNLVQGKTIIFVNTVDKCYKLKL 284 (540)
Q Consensus 206 SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~ll~-~~~~~~k~IIF~~s~~~~~~l~~ 284 (540)
|.|.......+...+--+ ++.+.... +....-..-.+......|+..+...+. ....+.++||||+|+..++.++.
T Consensus 382 TGTa~~e~~Ef~~iY~l~--vv~IPtnk-p~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~ 458 (796)
T PRK12906 382 TGTAKTEEEEFREIYNME--VITIPTNR-PVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSH 458 (796)
T ss_pred CCCCHHHHHHHHHHhCCC--EEEcCCCC-CeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHH
Confidence 444443333333322221 11111110 000000011233445667766666654 34456799999999999999999
Q ss_pred HHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccccccccccCccccccccCCCC---CcC--
Q psy16633 285 YLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQ---FVS-- 359 (540)
Q Consensus 285 ~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~---~v~-- 359 (540)
.|.+.|+++.++|+.+...++..+.+.++.|. |+|||+ +++||+|++ +|.
T Consensus 459 ~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATn-----------------------mAGRGtDI~l~~~V~~~ 513 (796)
T PRK12906 459 LLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATN-----------------------MAGRGTDIKLGPGVKEL 513 (796)
T ss_pred HHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEec-----------------------cccCCCCCCCCcchhhh
Confidence 99999999999999998777777777666665 999999 999999994 899
Q ss_pred ---EEEeCCCCCCcccchhccccccCCCCCceEEEEecccc
Q psy16633 360 ---NVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLRE 397 (540)
Q Consensus 360 ---~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e 397 (540)
+||+++.|.|.+.|.|++|||||.|.+|.+..|++.+|
T Consensus 514 GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD 554 (796)
T PRK12906 514 GGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLED 554 (796)
T ss_pred CCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEEEeccc
Confidence 99999999999999999999999999999999998765
No 97
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.94 E-value=4.4e-26 Score=208.66 Aligned_cols=165 Identities=30% Similarity=0.483 Sum_probs=140.2
Q ss_pred hHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCC
Q psy16633 42 TLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRD 121 (540)
Q Consensus 42 t~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~ 121 (540)
||+|.++++.+.+|+++++.||||+|||.+|++|+++.+.+ ....+++|++|+++|+.|+.+.+..++... .
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~------~~~~~~lii~P~~~l~~q~~~~~~~~~~~~--~ 72 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQE------GKDARVLIIVPTRALAEQQFERLRKFFSNT--N 72 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHT------TSSSEEEEEESSHHHHHHHHHHHHHHTTTT--T
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhcc------CCCceEEEEeeccccccccccccccccccc--c
Confidence 79999999999999999999999999999999999998865 234599999999999999999999988763 6
Q ss_pred ceEEEeecCcccc-cchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCCcHHHHHHHHHhCCc--
Q psy16633 122 VKCVDISEQVDVS-VQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPK-- 198 (540)
Q Consensus 122 i~~~~~~~~~~~~-~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~-- 198 (540)
+++..+.++.... .....+..+++|+|+||+++.+.+......+ .++++||+||+|.+.++++...+..+...+..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~-~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~ 151 (169)
T PF00270_consen 73 VRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINI-SRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFK 151 (169)
T ss_dssp SSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTG-TTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTT
T ss_pred cccccccccccccccccccccccccccccCcchhhcccccccccc-ccceeeccCcccccccccHHHHHHHHHHHhcCCC
Confidence 7778888877644 3444455679999999999999998866655 66999999999999998888889999888743
Q ss_pred ccceeeEeeeccHHHHH
Q psy16633 199 LYQAILASATLSEDVLS 215 (540)
Q Consensus 199 ~~q~il~SATl~~~~~~ 215 (540)
..|+++||||++..++.
T Consensus 152 ~~~~i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 152 NIQIILLSATLPSNVEK 168 (169)
T ss_dssp TSEEEEEESSSTHHHHH
T ss_pred CCcEEEEeeCCChhHhh
Confidence 58999999999976654
No 98
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.94 E-value=2.1e-24 Score=205.26 Aligned_cols=307 Identities=22% Similarity=0.265 Sum_probs=211.3
Q ss_pred CCC-CChHHHHHHHHHHh----cCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHH
Q psy16633 37 GWL-EPTLIQERAIPLIL----QNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNI 111 (540)
Q Consensus 37 g~~-~pt~~Q~~ai~~il----~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l 111 (540)
+|. ++|+.|+.+-..++ +.++.++.|-||+|||- .+++.++..++ +|.++.+.+|....|.+++..+
T Consensus 93 ~W~G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTE-Mif~~i~~al~-------~G~~vciASPRvDVclEl~~Rl 164 (441)
T COG4098 93 QWKGTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTE-MIFQGIEQALN-------QGGRVCIASPRVDVCLELYPRL 164 (441)
T ss_pred eeccccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchh-hhHHHHHHHHh-------cCCeEEEecCcccchHHHHHHH
Confidence 443 68999998866555 46899999999999998 46666766654 7999999999999999999999
Q ss_pred HHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCCcHHHHHH
Q psy16633 112 QELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKA 191 (540)
Q Consensus 112 ~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~ 191 (540)
++.+..| .+..++|+.+.. ....++|+|...++..- ..++++||||+|...- .-...+..
T Consensus 165 k~aF~~~----~I~~Lyg~S~~~-------fr~plvVaTtHQLlrFk--------~aFD~liIDEVDAFP~-~~d~~L~~ 224 (441)
T COG4098 165 KQAFSNC----DIDLLYGDSDSY-------FRAPLVVATTHQLLRFK--------QAFDLLIIDEVDAFPF-SDDQSLQY 224 (441)
T ss_pred HHhhccC----CeeeEecCCchh-------ccccEEEEehHHHHHHH--------hhccEEEEeccccccc-cCCHHHHH
Confidence 9987654 445666765433 23689999988876543 5688999999994321 11122332
Q ss_pred -HHHhCCcccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcCcccHH------HHHHHHHH-hc
Q psy16633 192 -VLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKA------TILYTLLK-LN 263 (540)
Q Consensus 192 -i~~~l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~~~k~------~~l~~ll~-~~ 263 (540)
+.+......-.|++|||+++.++.-.... +-..+++....-..+..+-.+....+-..+. ..+..+++ ..
T Consensus 225 Av~~ark~~g~~IylTATp~k~l~r~~~~g--~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~ 302 (441)
T COG4098 225 AVKKARKKEGATIYLTATPTKKLERKILKG--NLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQR 302 (441)
T ss_pred HHHHhhcccCceEEEecCChHHHHHHhhhC--CeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHH
Confidence 23334456679999999998776433221 2222333222111111122232222222222 13444444 34
Q ss_pred ccCCcEEEEecChhhHHHHHHHH-HhCCC-ceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCccccccccccc
Q psy16633 264 LVQGKTIIFVNTVDKCYKLKLYL-EQFKI-STCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKR 341 (540)
Q Consensus 264 ~~~~k~IIF~~s~~~~~~l~~~L-~~~~~-~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~ 341 (540)
..+.+++||++++...+.++..| ++++. .++..|++- ..|.+.++.|++|+.++||+|.
T Consensus 303 ~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d--~~R~EkV~~fR~G~~~lLiTTT----------------- 363 (441)
T COG4098 303 KTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSED--QHRKEKVEAFRDGKITLLITTT----------------- 363 (441)
T ss_pred hcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccC--ccHHHHHHHHHcCceEEEEEee-----------------
Confidence 45669999999999999999999 44443 446788873 5688999999999999999999
Q ss_pred ccCccccccccCCCCCcCEEEe-CCCC-CCcccchhccccccCCCC--CceEEEEeccccc
Q psy16633 342 KRDKESGVSRGIDFQFVSNVIN-FDFP-LDIQCYIHRAGRTARGKN--QGTALSFVSLREQ 398 (540)
Q Consensus 342 ~~~~~~~~~~GiD~~~v~~Vi~-~d~p-~s~~~yiqr~GRagR~g~--~g~~i~~~~~~e~ 398 (540)
.++||+.+|+|++++. -.-+ .+.++.+|.+||+||.-. .|..+.|-.....
T Consensus 364 ------ILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~sk 418 (441)
T COG4098 364 ------ILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHYGKSK 418 (441)
T ss_pred ------hhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEeccchH
Confidence 8999999999997553 2222 478899999999999764 4666666554443
No 99
>KOG0950|consensus
Probab=99.93 E-value=9.1e-25 Score=232.08 Aligned_cols=324 Identities=17% Similarity=0.232 Sum_probs=232.7
Q ss_pred CHHHHHHHHHCCCCCChHHHHHHH--HHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHH
Q psy16633 26 FCIPLQAIAKLGWLEPTLIQERAI--PLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKEL 103 (540)
Q Consensus 26 ~~~i~~~l~~~g~~~pt~~Q~~ai--~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~L 103 (540)
+....-..+..|...+..||.+|+ |.++.+++++..+||+.|||+++-+-++..++. ....++.+.|..+.
T Consensus 209 ~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~-------~rr~~llilp~vsi 281 (1008)
T KOG0950|consen 209 TKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLC-------RRRNVLLILPYVSI 281 (1008)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHH-------HhhceeEecceeeh
Confidence 333444555679999999999997 778889999999999999999999999988876 35678999999999
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHH----hcCcCCccCCccEEEEcCccc
Q psy16633 104 CNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHL----KAKTLDLKSSLEIVIIDEADL 179 (540)
Q Consensus 104 a~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l----~~~~~~~~~~l~~lViDEah~ 179 (540)
++.-...+..+....|..+.. .+|........ +.-++.|||.++-..++ ..+.. ..+++||+||.|.
T Consensus 282 v~Ek~~~l~~~~~~~G~~ve~--y~g~~~p~~~~----k~~sv~i~tiEkanslin~lie~g~~---~~~g~vvVdElhm 352 (1008)
T KOG0950|consen 282 VQEKISALSPFSIDLGFPVEE--YAGRFPPEKRR----KRESVAIATIEKANSLINSLIEQGRL---DFLGMVVVDELHM 352 (1008)
T ss_pred hHHHHhhhhhhccccCCcchh--hcccCCCCCcc----cceeeeeeehHhhHhHHHHHHhcCCc---cccCcEEEeeeee
Confidence 988888888888777544443 33544333222 45689999999855444 33444 5689999999999
Q ss_pred cccCCcHHHHHHHHHhC-----CcccceeeEeeeccHH--HHHHHHHhcC----CCeEEEecCCCCCCCCCeEEEEEEcC
Q psy16633 180 VFSFGYEDDMKAVLKFL-----PKLYQAILASATLSED--VLSLKHLILR----NPVILKLEEPAIAPVSQLAHYHILAQ 248 (540)
Q Consensus 180 l~~~~~~~~l~~i~~~l-----~~~~q~il~SATl~~~--~~~~~~~~l~----~p~~i~~~~~~~~~~~~l~~~~~~~~ 248 (540)
+.+.+.+..++.++..+ ....|+|+||||+++. +..+....+. .|+.+. +.-. . . ...+.
T Consensus 353 i~d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~~lL~~~L~A~~y~t~fRPv~L~--E~ik-~-G---~~i~~-- 423 (1008)
T KOG0950|consen 353 IGDKGRGAILELLLAKILYENLETSVQIIGMSATIPNNSLLQDWLDAFVYTTRFRPVPLK--EYIK-P-G---SLIYE-- 423 (1008)
T ss_pred eeccccchHHHHHHHHHHHhccccceeEeeeecccCChHHHHHHhhhhheecccCcccch--hccC-C-C---ccccc--
Confidence 99999998888887653 2346799999999863 2222221111 122111 0000 0 0 00000
Q ss_pred cccHHHHHHHHH-------------------Hhccc-CCcEEEEecChhhHHHHHHHHHhC-------------------
Q psy16633 249 EDEKATILYTLL-------------------KLNLV-QGKTIIFVNTVDKCYKLKLYLEQF------------------- 289 (540)
Q Consensus 249 ~~~k~~~l~~ll-------------------~~~~~-~~k~IIF~~s~~~~~~l~~~L~~~------------------- 289 (540)
..+...+..+. -.... +..+||||+++..|+.++..+...
T Consensus 424 -~~r~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~ 502 (1008)
T KOG0950|consen 424 -SSRNKVLREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSI 502 (1008)
T ss_pred -chhhHHHHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHH
Confidence 00222222222 11112 235999999999999987655321
Q ss_pred -------------------CCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccccccccccCcccccc
Q psy16633 290 -------------------KISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVS 350 (540)
Q Consensus 290 -------------------~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (540)
..+++++|+|++..+|..+...|++|...|++||+ +++
T Consensus 503 s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTS-----------------------Tla 559 (1008)
T KOG0950|consen 503 SNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATS-----------------------TLA 559 (1008)
T ss_pred HhHhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecc-----------------------hhh
Confidence 12778899999999999999999999999999999 999
Q ss_pred ccCCCCCcCEEEeCCC----CCCcccchhccccccCCCC--CceEEEEeccccc
Q psy16633 351 RGIDFQFVSNVINFDF----PLDIQCYIHRAGRTARGKN--QGTALSFVSLREQ 398 (540)
Q Consensus 351 ~GiD~~~v~~Vi~~d~----p~s~~~yiqr~GRagR~g~--~g~~i~~~~~~e~ 398 (540)
-|++.|..+++|-+-. +.+.-+|.||+|||||+|- .|.+|+++...+.
T Consensus 560 aGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~ 613 (1008)
T KOG0950|consen 560 AGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEK 613 (1008)
T ss_pred ccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcccccCcceEEEeeccch
Confidence 9999999998886432 3578899999999999985 5889999988775
No 100
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.93 E-value=2.8e-24 Score=243.90 Aligned_cols=303 Identities=18% Similarity=0.270 Sum_probs=194.9
Q ss_pred CChHHHHHHHHHHhc----C-CcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHH
Q psy16633 40 EPTLIQERAIPLILQ----N-KDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQEL 114 (540)
Q Consensus 40 ~pt~~Q~~ai~~il~----g-kd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l 114 (540)
.++++|.+||..+.+ | +..+++++||||||.+ ++.++..+++. ....++|||||+++|+.|..+.+..+
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~t-ai~li~~L~~~-----~~~~rVLfLvDR~~L~~Qa~~~F~~~ 486 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRT-AIALMYRLLKA-----KRFRRILFLVDRSALGEQAEDAFKDT 486 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHH-HHHHHHHHHhc-----CccCeEEEEecHHHHHHHHHHHHHhc
Confidence 589999999987763 3 5799999999999987 44455566542 24579999999999999999999887
Q ss_pred HhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCc-----CCccCCccEEEEcCccccccC------
Q psy16633 115 TMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKT-----LDLKSSLEIVIIDEADLVFSF------ 183 (540)
Q Consensus 115 ~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~-----~~~~~~l~~lViDEah~l~~~------ 183 (540)
.... ......+.+..... .........|+|+|.+.+...+.... ..+ ..+++||+||||+-...
T Consensus 487 ~~~~--~~~~~~i~~i~~L~--~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~-~~fdlIIiDEaHRs~~~d~~~~~ 561 (1123)
T PRK11448 487 KIEG--DQTFASIYDIKGLE--DKFPEDETKVHVATVQGMVKRILYSDDPMDKPPV-DQYDCIIVDEAHRGYTLDKEMSE 561 (1123)
T ss_pred cccc--ccchhhhhchhhhh--hhcccCCCCEEEEEHHHHHHhhhccccccccCCC-CcccEEEEECCCCCCcccccccc
Confidence 4322 11111111100000 01112357899999999877653211 233 78899999999985310
Q ss_pred ---------CcHHHHHHHHHhCCcccceeeEeeeccHHHHHHHHHhcCCCe---------------------EEEe--cC
Q psy16633 184 ---------GYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPV---------------------ILKL--EE 231 (540)
Q Consensus 184 ---------~~~~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~l~~p~---------------------~i~~--~~ 231 (540)
.+...+..++.+.. .-.|+||||+...... ++..|+ .+.. ..
T Consensus 562 ~~~~~~~~~~~~~~yr~iL~yFd--A~~IGLTATP~r~t~~----~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~ 635 (1123)
T PRK11448 562 GELQFRDQLDYVSKYRRVLDYFD--AVKIGLTATPALHTTE----IFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQ 635 (1123)
T ss_pred chhccchhhhHHHHHHHHHhhcC--ccEEEEecCCccchhH----HhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEecc
Confidence 12356677777653 4579999999643221 112222 1111 00
Q ss_pred CCCCC--CCCeEEEE-----E---EcCcc--------cH-------H-HHHHHHHHh--cccCCcEEEEecChhhHHHHH
Q psy16633 232 PAIAP--VSQLAHYH-----I---LAQED--------EK-------A-TILYTLLKL--NLVQGKTIIFVNTVDKCYKLK 283 (540)
Q Consensus 232 ~~~~~--~~~l~~~~-----~---~~~~~--------~k-------~-~~l~~ll~~--~~~~~k~IIF~~s~~~~~~l~ 283 (540)
..... ...+..+. + ..++. ++ . .++..+.+. ...++|+||||.++++|..+.
T Consensus 636 ~gi~~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~ 715 (1123)
T PRK11448 636 EGIHFEKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVV 715 (1123)
T ss_pred ccccccccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHH
Confidence 00000 00000000 0 00000 00 0 011112211 112479999999999999999
Q ss_pred HHHHhC------CC---ceEEeCCCCCHHHHHHHHHHHhcCCc-cEEEeCCCCccCCcccccccccccccCccccccccC
Q psy16633 284 LYLEQF------KI---STCVLNSELPAKARCHAVYQFNQGLY-DVIIASDEKALETPQINSTNNRKRKRDKESGVSRGI 353 (540)
Q Consensus 284 ~~L~~~------~~---~~~~l~~~l~~~~r~~i~~~F~~g~~-~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi 353 (540)
..|.+. ++ .+..++|+.+ .+..++++|+++.. .|+|+++ ++.+|+
T Consensus 716 ~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvd-----------------------mL~TG~ 770 (1123)
T PRK11448 716 RLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVD-----------------------LLTTGI 770 (1123)
T ss_pred HHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEec-----------------------ccccCC
Confidence 887652 22 4566888875 46789999999887 6999999 999999
Q ss_pred CCCCcCEEEeCCCCCCcccchhccccccCCC
Q psy16633 354 DFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384 (540)
Q Consensus 354 D~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g 384 (540)
|+|.|.+|+.++.+.|...|+||+||+.|..
T Consensus 771 DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~ 801 (1123)
T PRK11448 771 DVPSICNLVFLRRVRSRILYEQMLGRATRLC 801 (1123)
T ss_pred CcccccEEEEecCCCCHHHHHHHHhhhccCC
Confidence 9999999999999999999999999999964
No 101
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=9.6e-24 Score=227.96 Aligned_cols=318 Identities=15% Similarity=0.153 Sum_probs=215.5
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHH
Q psy16633 36 LGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELT 115 (540)
Q Consensus 36 ~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~ 115 (540)
+|. .|.++|--.--.+ .+.-++.++||.|||+++.+|++...+. +..|.|++|+..||.|..+++..+.
T Consensus 79 lgm-~~ydVQliGgl~L--~~G~IaEm~TGEGKTL~a~lp~~l~al~--------g~~VhIvT~ndyLA~RD~e~m~~l~ 147 (908)
T PRK13107 79 FEM-RHFDVQLLGGMVL--DSNRIAEMRTGEGKTLTATLPAYLNALT--------GKGVHVITVNDYLARRDAENNRPLF 147 (908)
T ss_pred hCC-CcCchHHhcchHh--cCCccccccCCCCchHHHHHHHHHHHhc--------CCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 455 6788885443333 3456999999999999999999877643 4559999999999999999999999
Q ss_pred hhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHH-HHHHhcC-cCC----ccCCccEEEEcCccccccCC-----
Q psy16633 116 MKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARA-LAHLKAK-TLD----LKSSLEIVIIDEADLVFSFG----- 184 (540)
Q Consensus 116 ~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l-~~~l~~~-~~~----~~~~l~~lViDEah~l~~~~----- 184 (540)
... ++++..+.++.+.... .-.-.++|+++||+.| .++++.+ ... ....+.+.||||||.++-..
T Consensus 148 ~~l--Glsv~~i~~~~~~~~r--~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPL 223 (908)
T PRK13107 148 EFL--GLTVGINVAGLGQQEK--KAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPL 223 (908)
T ss_pred Hhc--CCeEEEecCCCCHHHH--HhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCce
Confidence 987 6777777776654322 2223789999999999 8888765 221 22678999999999766211
Q ss_pred -----------cHHHHHHHHHhCCc-------------------cc----------------------------------
Q psy16633 185 -----------YEDDMKAVLKFLPK-------------------LY---------------------------------- 200 (540)
Q Consensus 185 -----------~~~~l~~i~~~l~~-------------------~~---------------------------------- 200 (540)
....+..+...+.+ ..
T Consensus 224 IISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~ 303 (908)
T PRK13107 224 IISGAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAAN 303 (908)
T ss_pred eecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchh
Confidence 11111111111110 00
Q ss_pred --------------------------------------------------------------------------------
Q psy16633 201 -------------------------------------------------------------------------------- 200 (540)
Q Consensus 201 -------------------------------------------------------------------------------- 200 (540)
T Consensus 304 ~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~ 383 (908)
T PRK13107 304 ISLLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQ 383 (908)
T ss_pred hHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHh
Confidence
Q ss_pred --ceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeE-EEEEEcCcccHHHHH-HHHHHhcccCCcEEEEecCh
Q psy16633 201 --QAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLA-HYHILAQEDEKATIL-YTLLKLNLVQGKTIIFVNTV 276 (540)
Q Consensus 201 --q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~-~~~~~~~~~~k~~~l-~~ll~~~~~~~k~IIF~~s~ 276 (540)
++.+||.|.......+...+--+-+.+....+ ..... .-.+......|+..+ ..+......+.++||||+|+
T Consensus 384 Y~kL~GMTGTa~te~~Ef~~iY~l~Vv~IPTnkp----~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv 459 (908)
T PRK13107 384 YEKLAGMTGTADTEAFEFQHIYGLDTVVVPTNRP----MVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSI 459 (908)
T ss_pred hhHhhcccCCChHHHHHHHHHhCCCEEECCCCCC----ccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcH
Confidence 11122222222211111111111111100000 00000 001223344555544 44444555677999999999
Q ss_pred hhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccccccccccCccccccccCCCC
Q psy16633 277 DKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQ 356 (540)
Q Consensus 277 ~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~ 356 (540)
..++.++..|.+.|+++.++|+.+++.++..+.+.|+.|. |+|||| +++||+|+.
T Consensus 460 ~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATn-----------------------mAGRGTDIk 514 (908)
T PRK13107 460 EQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATN-----------------------MAGRGTDIV 514 (908)
T ss_pred HHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecC-----------------------CcCCCccee
Confidence 9999999999999999999999999999999999999998 999999 999999986
Q ss_pred C-------------------------------------cCEEEeCCCCCCcccchhccccccCCCCCceEEEEecccc
Q psy16633 357 F-------------------------------------VSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLRE 397 (540)
Q Consensus 357 ~-------------------------------------v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e 397 (540)
= ==+||-...+.|..-=-|-.||+||-|.+|.+-.|++-+|
T Consensus 515 Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED 592 (908)
T PRK13107 515 LGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMED 592 (908)
T ss_pred cCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCc
Confidence 1 1267777777777777799999999999999999998655
No 102
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.91 E-value=1.8e-22 Score=220.03 Aligned_cols=335 Identities=19% Similarity=0.210 Sum_probs=232.5
Q ss_pred hHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHH-hhcCC
Q psy16633 42 TLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELT-MKCSR 120 (540)
Q Consensus 42 t~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~-~~~~~ 120 (540)
+....+.+..+.++.-++|.|+||||||.. +| +.++.. ....+..+.++-|.|--|..+++.+.+.. ...|.
T Consensus 52 ~~~~~~i~~ai~~~~vvii~getGsGKTTq--lP--~~lle~---g~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~ 124 (845)
T COG1643 52 TAVRDEILKAIEQNQVVIIVGETGSGKTTQ--LP--QFLLEE---GLGIAGKIGCTQPRRLAARSVAERVAEELGEKLGE 124 (845)
T ss_pred HHHHHHHHHHHHhCCEEEEeCCCCCChHHH--HH--HHHHhh---hcccCCeEEecCchHHHHHHHHHHHHHHhCCCcCc
Confidence 345556667777788899999999999974 44 223321 11356788999999977788777666543 32332
Q ss_pred CceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCcccc-ccCCcH-HHHHHHHHhCCc
Q psy16633 121 DVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLV-FSFGYE-DDMKAVLKFLPK 198 (540)
Q Consensus 121 ~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l-~~~~~~-~~l~~i~~~l~~ 198 (540)
.+.+..-..+ .......|-++|.|.|+..+.++... +.+++|||||||.= ++-.+. ..+..++...+.
T Consensus 125 ~VGY~iRfe~--------~~s~~Trik~mTdGiLlrei~~D~~L--s~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~ 194 (845)
T COG1643 125 TVGYSIRFES--------KVSPRTRIKVMTDGILLREIQNDPLL--SGYSVVIIDEAHERSLNTDILLGLLKDLLARRRD 194 (845)
T ss_pred eeeEEEEeec--------cCCCCceeEEeccHHHHHHHhhCccc--ccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCC
Confidence 2332222211 12246789999999999999987653 89999999999931 111111 234445566666
Q ss_pred ccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcC-ccc-HHHHHHHHHHh--cccCCcEEEEec
Q psy16633 199 LYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQ-EDE-KATILYTLLKL--NLVQGKTIIFVN 274 (540)
Q Consensus 199 ~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~-~~~-k~~~l~~ll~~--~~~~~k~IIF~~ 274 (540)
..++|.||||+..+ .+. .++.+.-++.+....++ +..+|.... .+. -...+...+.. ....|-+|||.+
T Consensus 195 DLKiIimSATld~~--rfs-~~f~~apvi~i~GR~fP----Vei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLp 267 (845)
T COG1643 195 DLKLIIMSATLDAE--RFS-AYFGNAPVIEIEGRTYP----VEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLP 267 (845)
T ss_pred CceEEEEecccCHH--HHH-HHcCCCCEEEecCCccc----eEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECC
Confidence 78999999999863 233 34555555566554433 344443332 222 22333333322 234788999999
Q ss_pred ChhhHHHHHHHHHh--C--CCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccccccccccCcccccc
Q psy16633 275 TVDKCYKLKLYLEQ--F--KISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVS 350 (540)
Q Consensus 275 s~~~~~~l~~~L~~--~--~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (540)
...+.+.+...|++ . .+.++.+||.|+.+++..+++--..|.-+|++||+ +++
T Consensus 268 G~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATN-----------------------IAE 324 (845)
T COG1643 268 GQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATN-----------------------IAE 324 (845)
T ss_pred cHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEcc-----------------------ccc
Confidence 99999999999997 3 47889999999999999998888888777999999 899
Q ss_pred ccCCCCCcCEEEeCCC------------------CCCcccchhccccccCCCCCceEEEEeccccccccccccchhhhhh
Q psy16633 351 RGIDFQFVSNVINFDF------------------PLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSL 412 (540)
Q Consensus 351 ~GiD~~~v~~Vi~~d~------------------p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e~~~~~~~~~~~~~~~ 412 (540)
.+|.+++|.+||+-+. |-|-.+..||.|||||- .+|.|+-+++..+...+...+..++...
T Consensus 325 TSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~-~pGicyRLyse~~~~~~~~~t~PEIlrt 403 (845)
T COG1643 325 TSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRT-GPGICYRLYSEEDFLAFPEFTLPEILRT 403 (845)
T ss_pred cceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccC-CCceEEEecCHHHHHhcccCCChhhhhc
Confidence 9999999999997443 34677888999999997 4899999999877777666666666655
Q ss_pred hhhHHHHHHHHH
Q psy16633 413 REQDLMNDVNEY 424 (540)
Q Consensus 413 ~~~~~~~~i~~~ 424 (540)
....+.-++..+
T Consensus 404 dLs~~vL~l~~~ 415 (845)
T COG1643 404 DLSGLVLQLKSL 415 (845)
T ss_pred chHHHHHHHHhc
Confidence 554444444433
No 103
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.90 E-value=1.7e-22 Score=223.64 Aligned_cols=327 Identities=19% Similarity=0.183 Sum_probs=213.5
Q ss_pred ChHHHHHHHHHHhcC---C-cEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHh
Q psy16633 41 PTLIQERAIPLILQN---K-DVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTM 116 (540)
Q Consensus 41 pt~~Q~~ai~~il~g---k-d~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~ 116 (540)
+.+.|..++..+.+. . .+++.||||+|||.+.++++...+... .....+++++.|++++.+++++.++..+.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~----~~~~~r~i~vlP~~t~ie~~~~r~~~~~~ 271 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK----IKLKSRVIYVLPFRTIIEDMYRRAKEIFG 271 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc----ccccceEEEEccHHHHHHHHHHHHHhhhc
Confidence 489999999998874 3 688999999999999999988776441 13688999999999999999999998765
Q ss_pred hcCCCceEEEeecCcccccc--------------hhhhhCCCCEEEEChHHHHHHHhc-CcCCcc--CCccEEEEcCccc
Q psy16633 117 KCSRDVKCVDISEQVDVSVQ--------------EPLLVERPDIVVATPARALAHLKA-KTLDLK--SSLEIVIIDEADL 179 (540)
Q Consensus 117 ~~~~~i~~~~~~~~~~~~~~--------------~~~l~~~~~Ivv~Tp~~l~~~l~~-~~~~~~--~~l~~lViDEah~ 179 (540)
... +......+....... ......-..+.++||-........ ...... -..+.+|+||+|.
T Consensus 272 ~~~--~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~ 349 (733)
T COG1203 272 LFS--VIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHL 349 (733)
T ss_pred ccc--cccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHh
Confidence 442 111101111110000 000001234555565554442211 111100 1347899999998
Q ss_pred cccCCcHHHHHHHHHhCC-cccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCC--CeEEEEEE-cCcccHHHH
Q psy16633 180 VFSFGYEDDMKAVLKFLP-KLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVS--QLAHYHIL-AQEDEKATI 255 (540)
Q Consensus 180 l~~~~~~~~l~~i~~~l~-~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~--~l~~~~~~-~~~~~k~~~ 255 (540)
+-+......+..++..+. .+..+++||||+|+.........+.+...+.......+..+ .+.+.... .........
T Consensus 350 ~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 429 (733)
T COG1203 350 YADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEEL 429 (733)
T ss_pred hcccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhh
Confidence 776643334444444433 35789999999999998877766655544443322110000 11111110 111100122
Q ss_pred HHHHHHhcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHH----hcCCccEEEeCCCCccCCc
Q psy16633 256 LYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQF----NQGLYDVIIASDEKALETP 331 (540)
Q Consensus 256 l~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F----~~g~~~iLIaT~~~~~~~~ 331 (540)
...........++++|.|||++.|.+++..|+..+.+++.+||.++..+|...+.+. ..+...|+|||+
T Consensus 430 ~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQ------- 502 (733)
T COG1203 430 IELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQ------- 502 (733)
T ss_pred hhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEee-------
Confidence 222223334567999999999999999999999877899999999999999887754 467899999999
Q ss_pred ccccccccccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCC--CCceEEEEecccccc
Q psy16633 332 QINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK--NQGTALSFVSLREQD 399 (540)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g--~~g~~i~~~~~~e~~ 399 (540)
+++.|+|+. .+++|-= +..+++.+||+||++|.| ..|.++.+.......
T Consensus 503 ----------------VIEagvDid-fd~mITe--~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~ 553 (733)
T COG1203 503 ----------------VIEAGVDID-FDVLITE--LAPIDSLIQRAGRVNRHGKKENGKIYVYNDEERGP 553 (733)
T ss_pred ----------------EEEEEeccc-cCeeeec--CCCHHHHHHHHHHHhhcccccCCceeEeecccCCC
Confidence 999999986 6665532 355889999999999999 567777776644433
No 104
>KOG0922|consensus
Probab=99.90 E-value=6.7e-22 Score=204.04 Aligned_cols=322 Identities=19% Similarity=0.214 Sum_probs=220.8
Q ss_pred HHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHH-hhcCCCceE
Q psy16633 46 ERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELT-MKCSRDVKC 124 (540)
Q Consensus 46 ~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~-~~~~~~i~~ 124 (540)
.+.+..+.+++-++|.|.||||||. .+| |.|.+.. -...+++-+.-|.|--|..++.....-. ...|..+..
T Consensus 57 ~~il~~ve~nqvlIviGeTGsGKST--Qip--QyL~eaG---~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY 129 (674)
T KOG0922|consen 57 DQILYAVEDNQVLIVIGETGSGKST--QIP--QYLAEAG---FASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGY 129 (674)
T ss_pred HHHHHHHHHCCEEEEEcCCCCCccc--cHh--HHHHhcc---cccCCcEEeecCchHHHHHHHHHHHHHhCCCcCceeee
Confidence 3455666667789999999999997 556 5554421 1233448899999988877776655432 222222222
Q ss_pred EEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCCcH-HHHHHHHHhC---Cccc
Q psy16633 125 VDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYE-DDMKAVLKFL---PKLY 200 (540)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~~-~~l~~i~~~l---~~~~ 200 (540)
..-..+. ......|.+.|-|.|++.+..+... +..++||+|||| +.... +.+..+++.+ ++..
T Consensus 130 ~IRFed~--------ts~~TrikymTDG~LLRE~l~Dp~L--skYsvIIlDEAH---ERsl~TDiLlGlLKki~~~R~~L 196 (674)
T KOG0922|consen 130 TIRFEDS--------TSKDTRIKYMTDGMLLREILKDPLL--SKYSVIILDEAH---ERSLHTDILLGLLKKILKKRPDL 196 (674)
T ss_pred EEEeccc--------CCCceeEEEecchHHHHHHhcCCcc--ccccEEEEechh---hhhhHHHHHHHHHHHHHhcCCCc
Confidence 2222211 1135679999999999988776543 899999999999 33222 2233333332 2346
Q ss_pred ceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcCcccHH-HHHHHHHH--hcccCCcEEEEecChh
Q psy16633 201 QAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKA-TILYTLLK--LNLVQGKTIIFVNTVD 277 (540)
Q Consensus 201 q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~~~k~-~~l~~ll~--~~~~~~k~IIF~~s~~ 277 (540)
++|+||||+..+ ....++.+..++.+.....+ +..+|...+..+-. ..+..+++ .....|-+|||....+
T Consensus 197 klIimSATlda~---kfS~yF~~a~i~~i~GR~fP----Vei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqe 269 (674)
T KOG0922|consen 197 KLIIMSATLDAE---KFSEYFNNAPILTIPGRTFP----VEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQE 269 (674)
T ss_pred eEEEEeeeecHH---HHHHHhcCCceEeecCCCCc----eeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHH
Confidence 899999999853 23345555455555544332 44455544433332 22333333 2356789999999999
Q ss_pred hHHHHHHHHHhC----CC----ceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccccccccccCccccc
Q psy16633 278 KCYKLKLYLEQF----KI----STCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGV 349 (540)
Q Consensus 278 ~~~~l~~~L~~~----~~----~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (540)
+.+.++..|.+. +- -+..+||.||.+++..++..-..|.-+|++||+ .+
T Consensus 270 EIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTN-----------------------IA 326 (674)
T KOG0922|consen 270 EIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTN-----------------------IA 326 (674)
T ss_pred HHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcc-----------------------ee
Confidence 999998888764 11 235789999999999999988899999999999 88
Q ss_pred cccCCCCCcCEEEeCCC------------------CCCcccchhccccccCCCCCceEEEEeccccccccccccchhhhh
Q psy16633 350 SRGIDFQFVSNVINFDF------------------PLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVS 411 (540)
Q Consensus 350 ~~GiD~~~v~~Vi~~d~------------------p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e~~~~~~~~~~~~~~ 411 (540)
+..+.++++..||+-++ |-|-.+-.||.|||||-| +|.|+-+++..+.+.|...+..++.+
T Consensus 327 ETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~~~~~~~~~PEI~R 405 (674)
T KOG0922|consen 327 ETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAYDKMPLQTVPEIQR 405 (674)
T ss_pred eeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHHhhcccCCCCceee
Confidence 89999999999997443 457778889999999974 79999999999888877777766655
Q ss_pred hhhhHHH
Q psy16633 412 LREQDLM 418 (540)
Q Consensus 412 ~~~~~~~ 418 (540)
......+
T Consensus 406 ~~Ls~~v 412 (674)
T KOG0922|consen 406 VNLSSAV 412 (674)
T ss_pred echHHHH
Confidence 5443333
No 105
>KOG0920|consensus
Probab=99.90 E-value=2e-22 Score=218.62 Aligned_cols=389 Identities=16% Similarity=0.175 Sum_probs=250.2
Q ss_pred hHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHH-hhcCC
Q psy16633 42 TLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELT-MKCSR 120 (540)
Q Consensus 42 t~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~-~~~~~ 120 (540)
...+...+..+.+...++|.+.||||||.-.---+++...+. ....++++.-|.|--|..+++.+..-- ..++
T Consensus 175 ~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~-----~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g- 248 (924)
T KOG0920|consen 175 YKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIES-----GAACNIICTQPRRISAISVAERVAKERGESLG- 248 (924)
T ss_pred HHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhc-----CCCCeEEecCCchHHHHHHHHHHHHHhccccC-
Confidence 466777888888889999999999999985544455554442 267789999999988888888766532 2232
Q ss_pred CceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccc-cCCcHHHHHHHHHhCCcc
Q psy16633 121 DVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVF-SFGYEDDMKAVLKFLPKL 199 (540)
Q Consensus 121 ~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~-~~~~~~~l~~i~~~l~~~ 199 (540)
-.++.-.+.. . .......+++||.|.|++.+..+.. + ..+.++|+||+|.-. +..|--.+.+.+-...+.
T Consensus 249 -~~VGYqvrl~-----~-~~s~~t~L~fcTtGvLLr~L~~~~~-l-~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~ 319 (924)
T KOG0920|consen 249 -EEVGYQVRLE-----S-KRSRETRLLFCTTGVLLRRLQSDPT-L-SGVTHIIVDEVHERSINTDFLLILLKDLLPRNPD 319 (924)
T ss_pred -CeeeEEEeee-----c-ccCCceeEEEecHHHHHHHhccCcc-c-ccCceeeeeeEEEccCCcccHHHHHHHHhhhCCC
Confidence 1111111111 1 1113468999999999999988443 3 899999999999432 222333333333333467
Q ss_pred cceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCC---------------CCeEEEE-----------E-EcCcccH
Q psy16633 200 YQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPV---------------SQLAHYH-----------I-LAQEDEK 252 (540)
Q Consensus 200 ~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~---------------~~l~~~~-----------~-~~~~~~k 252 (540)
.++|+||||+..+ .+...+. +..++.+.....+.. ....++. + ....+-.
T Consensus 320 LkvILMSAT~dae--~fs~YF~-~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id 396 (924)
T KOG0920|consen 320 LKVILMSATLDAE--LFSDYFG-GCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEID 396 (924)
T ss_pred ceEEEeeeecchH--HHHHHhC-CCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhcccccc
Confidence 8999999999843 3333333 333333322111000 0001110 0 0011123
Q ss_pred HHHHHHHHHh---cccCCcEEEEecChhhHHHHHHHHHhC-------CCceEEeCCCCCHHHHHHHHHHHhcCCccEEEe
Q psy16633 253 ATILYTLLKL---NLVQGKTIIFVNTVDKCYKLKLYLEQF-------KISTCVLNSELPAKARCHAVYQFNQGLYDVIIA 322 (540)
Q Consensus 253 ~~~l~~ll~~---~~~~~k~IIF~~s~~~~~~l~~~L~~~-------~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIa 322 (540)
..++..++.. ....|.+|||.+..+++..++..|+.. .+-+..+|+.|+..++..++...-.|.-+|++|
T Consensus 397 ~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIla 476 (924)
T KOG0920|consen 397 YDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILA 476 (924)
T ss_pred HHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhh
Confidence 3444444432 345679999999999999999999752 245678899999999999999999999999999
Q ss_pred CCCCccCCcccccccccccccCccccccccCCCCCcCEEEe--------CCCC----------CCcccchhccccccCCC
Q psy16633 323 SDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVIN--------FDFP----------LDIQCYIHRAGRTARGK 384 (540)
Q Consensus 323 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~--------~d~p----------~s~~~yiqr~GRagR~g 384 (540)
|+ .++.+|.+++|-+||+ ||.- -|...-.||.|||||.
T Consensus 477 TN-----------------------IAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv- 532 (924)
T KOG0920|consen 477 TN-----------------------IAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV- 532 (924)
T ss_pred hh-----------------------hHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-
Confidence 99 8999999999999997 4432 2455557999999997
Q ss_pred CCceEEEEecccccccccc-ccchhhhhhhhhHHHHHHHHHHhhccccccccccccccchhhhhhhhhhHHHHHHhhhcc
Q psy16633 385 NQGTALSFVSLREQDLMND-GTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRSNYFE 463 (540)
Q Consensus 385 ~~g~~i~~~~~~e~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~d~~~~~~f~ 463 (540)
.+|.|+.+++....+.+.. .+..+..+...+++.-.++ -+.+..+..|..++-|+....-..
T Consensus 533 ~~G~cy~L~~~~~~~~~~~~~q~PEilR~pL~~l~L~iK-----------------~l~~~~~~~fLskaldpP~~~~v~ 595 (924)
T KOG0920|consen 533 RPGICYHLYTRSRYEKLMLAYQLPEILRTPLEELCLHIK-----------------VLEQGSIKAFLSKALDPPPADAVD 595 (924)
T ss_pred cCCeeEEeechhhhhhcccccCChHHHhChHHHhhheee-----------------eccCCCHHHHHHHhcCCCChHHHH
Confidence 6899999999877666555 5666665555544443333 134445557777765555442232
Q ss_pred cCc---chhhhhccccccccccccCCCCCCC
Q psy16633 464 DNP---TDLETLRHDKALYTVRIQSHLADVP 491 (540)
Q Consensus 464 ~~~---~~l~~l~~~~~l~~~~~~~~l~~~p 491 (540)
... .++.+|..+..|.+ +..||+.+|
T Consensus 596 ~a~~~L~~igaL~~~e~LT~--LG~~la~lP 624 (924)
T KOG0920|consen 596 LAIERLKQIGALDESEELTP--LGLHLASLP 624 (924)
T ss_pred HHHHHHHHhccccCcccchH--HHHHHHhCC
Confidence 222 23444555555443 355666666
No 106
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.89 E-value=2.7e-21 Score=215.89 Aligned_cols=314 Identities=18% Similarity=0.230 Sum_probs=209.1
Q ss_pred CChHHHHHHHHHHh----cCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHH
Q psy16633 40 EPTLIQERAIPLIL----QNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELT 115 (540)
Q Consensus 40 ~pt~~Q~~ai~~il----~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~ 115 (540)
.++++|.+.+..+. +|.+.|+.-.+|.|||+.. +.++..+... ......+|||||. ++..||.+.+.+++
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQa-IalL~~L~~~----~~~~gp~LIVvP~-SlL~nW~~Ei~kw~ 242 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQT-ISLLGYLHEY----RGITGPHMVVAPK-STLGNWMNEIRRFC 242 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHH-HHHHHHHHHh----cCCCCCEEEEeCh-HHHHHHHHHHHHHC
Confidence 68999999998875 4778999999999999864 4444444332 1234578999996 66788999998876
Q ss_pred hhcCCCceEEEeecCcccccc---hhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCCcHHHHHHH
Q psy16633 116 MKCSRDVKCVDISEQVDVSVQ---EPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAV 192 (540)
Q Consensus 116 ~~~~~~i~~~~~~~~~~~~~~---~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i 192 (540)
. .+.+..+.|....... ........+|+|+|++.+...... +.- -.+++||+||||++-... ..+...
T Consensus 243 p----~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~--L~k-~~W~~VIvDEAHrIKN~~--Sklska 313 (1033)
T PLN03142 243 P----VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA--LKR-FSWRYIIIDEAHRIKNEN--SLLSKT 313 (1033)
T ss_pred C----CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH--hcc-CCCCEEEEcCccccCCHH--HHHHHH
Confidence 3 4556666664332111 111234689999999988654322 111 467899999999886543 334444
Q ss_pred HHhCCcccceeeEeeeccH-H---HHHHHHHhc--------------------------------CCCe-----------
Q psy16633 193 LKFLPKLYQAILASATLSE-D---VLSLKHLIL--------------------------------RNPV----------- 225 (540)
Q Consensus 193 ~~~l~~~~q~il~SATl~~-~---~~~~~~~~l--------------------------------~~p~----------- 225 (540)
+..+.. ...+++|+|+-. . +..+..... -.|.
T Consensus 314 lr~L~a-~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~ 392 (1033)
T PLN03142 314 MRLFST-NYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEK 392 (1033)
T ss_pred HHHhhc-CcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhh
Confidence 445543 345889999721 1 111111000 0010
Q ss_pred --------EEEecCCCC----------------CCCC---C-------e----EEEEE---------------EcCcccH
Q psy16633 226 --------ILKLEEPAI----------------APVS---Q-------L----AHYHI---------------LAQEDEK 252 (540)
Q Consensus 226 --------~i~~~~~~~----------------~~~~---~-------l----~~~~~---------------~~~~~~k 252 (540)
++.+..... .... . + .+-++ .+....|
T Consensus 393 ~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgK 472 (1033)
T PLN03142 393 GLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGK 472 (1033)
T ss_pred hCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhH
Confidence 011100000 0000 0 0 00000 0112345
Q ss_pred HHHHHHHHHhc-ccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcC---CccEEEeCCCCcc
Q psy16633 253 ATILYTLLKLN-LVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQG---LYDVIIASDEKAL 328 (540)
Q Consensus 253 ~~~l~~ll~~~-~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g---~~~iLIaT~~~~~ 328 (540)
..++..++... ..+.++|||+........|..+|...|+..+.++|+++..+|..+++.|+.. ..-+|++|.
T Consensus 473 l~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTr---- 548 (1033)
T PLN03142 473 MVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTR---- 548 (1033)
T ss_pred HHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEecc----
Confidence 55666655432 2456999999999999999999999999999999999999999999999863 345789998
Q ss_pred CCcccccccccccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEE
Q psy16633 329 ETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSF 392 (540)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~ 392 (540)
+.+.|||+..+++||+||+|+++....|++||+-|.|+...+.++
T Consensus 549 -------------------AGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~Vy 593 (1033)
T PLN03142 549 -------------------AGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVF 593 (1033)
T ss_pred -------------------ccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEE
Confidence 899999999999999999999999999999999999987654433
No 107
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.89 E-value=1.5e-21 Score=209.84 Aligned_cols=317 Identities=21% Similarity=0.196 Sum_probs=207.9
Q ss_pred CCChHHHHHHHHHHhcC----CcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHH
Q psy16633 39 LEPTLIQERAIPLILQN----KDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQEL 114 (540)
Q Consensus 39 ~~pt~~Q~~ai~~il~g----kd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l 114 (540)
..+++-|+.|+..+... +..++.+.||||||-+|+=.+-+.+ ..|..+|++||-.+|..|+...++..
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L--------~~GkqvLvLVPEI~Ltpq~~~rf~~r 268 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVL--------AQGKQVLVLVPEIALTPQLLARFKAR 268 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHH--------HcCCEEEEEeccccchHHHHHHHHHH
Confidence 35678899999999776 5699999999999998876665555 36899999999999999999999987
Q ss_pred HhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCcccccc-----CCcH-HH
Q psy16633 115 TMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFS-----FGYE-DD 188 (540)
Q Consensus 115 ~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~-----~~~~-~~ 188 (540)
+. ....+-...++.+.....+.....+...||||| ++.-+..+.++++||+||-|--.- +.|. .+
T Consensus 269 Fg-~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGt--------RSAlF~Pf~~LGLIIvDEEHD~sYKq~~~prYhARd 339 (730)
T COG1198 269 FG-AKVAVLHSGLSPGERYRVWRRARRGEARVVIGT--------RSALFLPFKNLGLIIVDEEHDSSYKQEDGPRYHARD 339 (730)
T ss_pred hC-CChhhhcccCChHHHHHHHHHHhcCCceEEEEe--------chhhcCchhhccEEEEeccccccccCCcCCCcCHHH
Confidence 75 222344455556666667777778899999999 444455559999999999993210 1111 23
Q ss_pred HHHHHHhCCcccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCC-CCCCCeEEEEEEcC--cccH-----HHHHHHHH
Q psy16633 189 MKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAI-APVSQLAHYHILAQ--EDEK-----ATILYTLL 260 (540)
Q Consensus 189 l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~-~~~~~l~~~~~~~~--~~~k-----~~~l~~ll 260 (540)
+..... -..++++|+-|||++-+-....... .-..+.+..... .....+ ..+... .... ..++..+-
T Consensus 340 vA~~Ra-~~~~~pvvLgSATPSLES~~~~~~g--~y~~~~L~~R~~~a~~p~v--~iiDmr~e~~~~~~~lS~~Ll~~i~ 414 (730)
T COG1198 340 VAVLRA-KKENAPVVLGSATPSLESYANAESG--KYKLLRLTNRAGRARLPRV--EIIDMRKEPLETGRSLSPALLEAIR 414 (730)
T ss_pred HHHHHH-HHhCCCEEEecCCCCHHHHHhhhcC--ceEEEEccccccccCCCcc--eEEeccccccccCccCCHHHHHHHH
Confidence 332222 2346899999999885443333211 112233322211 101111 111111 1111 23444444
Q ss_pred HhcccCCcEEEEecChhhHHH-----------------------------------------------------------
Q psy16633 261 KLNLVQGKTIIFVNTVDKCYK----------------------------------------------------------- 281 (540)
Q Consensus 261 ~~~~~~~k~IIF~~s~~~~~~----------------------------------------------------------- 281 (540)
+....+.++|+|+|.+.-+..
T Consensus 415 ~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~Gte 494 (730)
T COG1198 415 KTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTE 494 (730)
T ss_pred HHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHH
Confidence 444456688888887654322
Q ss_pred -HHHHHHhC--CCceEEeCCCCCHH--HHHHHHHHHhcCCccEEEeCCCCccCCcccccccccccccCccccccccCCCC
Q psy16633 282 -LKLYLEQF--KISTCVLNSELPAK--ARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQ 356 (540)
Q Consensus 282 -l~~~L~~~--~~~~~~l~~~l~~~--~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~ 356 (540)
+.+.|.++ +.++..+.++.+.. .-...+..|.+|+.+|||.|+ +++.|.|||
T Consensus 495 rieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQ-----------------------miaKG~~fp 551 (730)
T COG1198 495 RIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQ-----------------------MIAKGHDFP 551 (730)
T ss_pred HHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecch-----------------------hhhcCCCcc
Confidence 22333222 33556666665443 345679999999999999999 999999999
Q ss_pred CcCEEEeCCCC------------CCcccchhccccccCCCCCceEEEEeccccccc
Q psy16633 357 FVSNVINFDFP------------LDIQCYIHRAGRTARGKNQGTALSFVSLREQDL 400 (540)
Q Consensus 357 ~v~~Vi~~d~p------------~s~~~yiqr~GRagR~g~~g~~i~~~~~~e~~~ 400 (540)
+++.|...|.. .+...+.|-.|||||++.+|.++.-....+...
T Consensus 552 ~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp~ 607 (730)
T COG1198 552 NVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHPA 607 (730)
T ss_pred cceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCCcHH
Confidence 99986644332 134556899999999999999888776666554
No 108
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.88 E-value=1.2e-20 Score=213.17 Aligned_cols=332 Identities=20% Similarity=0.231 Sum_probs=206.9
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHH----HHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCc
Q psy16633 25 LFCIPLQAIAKLGWLEPTLIQERAIP----LILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPS 100 (540)
Q Consensus 25 L~~~i~~~l~~~g~~~pt~~Q~~ai~----~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt 100 (540)
+++.+.+.+...|| ++++.|.+.+. .+.+|+++++.||||+|||++|++|++.... .+.+++|.+||
T Consensus 231 ~~~~~~~~~~~~~~-~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~--------~~~~vvi~t~t 301 (850)
T TIGR01407 231 LSSLFSKNIDRLGL-EYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI--------TEKPVVISTNT 301 (850)
T ss_pred ccHHHHHhhhhcCC-ccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc--------CCCeEEEEeCc
Confidence 45577788888999 58999998666 4456889999999999999999999987652 35689999999
Q ss_pred HHHHHHHHH-HHHHHHhhcCCCceEEEeecCccccc--------------------------------------------
Q psy16633 101 KELCNQLHK-NIQELTMKCSRDVKCVDISEQVDVSV-------------------------------------------- 135 (540)
Q Consensus 101 ~~La~q~~~-~l~~l~~~~~~~i~~~~~~~~~~~~~-------------------------------------------- 135 (540)
++|..|+.. .+..+...++..+++..+.|..+.--
T Consensus 302 ~~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~ 381 (850)
T TIGR01407 302 KVLQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGG 381 (850)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCc
Confidence 999999865 56666554444455555544332100
Q ss_pred ----c-----------------------hhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCC----
Q psy16633 136 ----Q-----------------------EPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFG---- 184 (540)
Q Consensus 136 ----~-----------------------~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~---- 184 (540)
+ .......++|||+....|++.+......+ ....++||||||.+.+..
T Consensus 382 ~~~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~il-p~~~~lIiDEAH~L~d~a~~~~ 460 (850)
T TIGR01407 382 NKMFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELF-PSFRDLIIDEAHHLPDIAENQL 460 (850)
T ss_pred chhhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccC-CCCCEEEEECcchHHHHHHHHh
Confidence 0 00011347899999999888775543223 566899999999865310
Q ss_pred ---c-----HHH---H----------------------------------------------------------HH---H
Q psy16633 185 ---Y-----EDD---M----------------------------------------------------------KA---V 192 (540)
Q Consensus 185 ---~-----~~~---l----------------------------------------------------------~~---i 192 (540)
+ ... + .. .
T Consensus 461 ~~~ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~ 540 (850)
T TIGR01407 461 QEELDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKF 540 (850)
T ss_pred cceeCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 0 000 0 00 0
Q ss_pred HHh-----------C-------------------------------------CcccceeeEeeeccH--HHHHHHHHh-c
Q psy16633 193 LKF-----------L-------------------------------------PKLYQAILASATLSE--DVLSLKHLI-L 221 (540)
Q Consensus 193 ~~~-----------l-------------------------------------~~~~q~il~SATl~~--~~~~~~~~~-l 221 (540)
... + ++...+|++|||++. ....+.... +
T Consensus 541 ~~~~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl 620 (850)
T TIGR01407 541 DLALKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGL 620 (850)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCC
Confidence 000 0 001357899999973 233343332 3
Q ss_pred CCCeEEEecCCCCCCCCCeEEEEEEcC--------cccHH-H---HHHHHHHhcccCCcEEEEecChhhHHHHHHHHHh-
Q psy16633 222 RNPVILKLEEPAIAPVSQLAHYHILAQ--------EDEKA-T---ILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQ- 288 (540)
Q Consensus 222 ~~p~~i~~~~~~~~~~~~l~~~~~~~~--------~~~k~-~---~l~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~- 288 (540)
.+.....+..+......+. ..++..+ ...-. . .+..++. ..+|++|||++|....+.++..|..
T Consensus 621 ~~~~~~~~~~spf~~~~~~-~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~--~~~g~~LVlftS~~~l~~v~~~L~~~ 697 (850)
T TIGR01407 621 TDVHFNTIEPTPLNYAENQ-RVLIPTDAPAIQNKSLEEYAQEIASYIIEITA--ITSPKILVLFTSYEMLHMVYDMLNEL 697 (850)
T ss_pred CccccceecCCCCCHHHcC-EEEecCCCCCCCCCChHHHHHHHHHHHHHHHH--hcCCCEEEEeCCHHHHHHHHHHHhhh
Confidence 2222222211111111111 1122111 01111 1 2222222 2468999999999999999999875
Q ss_pred ---CCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccccccccccCccccccccCCCCCcC--EEEe
Q psy16633 289 ---FKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVS--NVIN 363 (540)
Q Consensus 289 ---~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~--~Vi~ 363 (540)
.++. ++..+.. .+|..+++.|++|...||+||+ .+++|||+++.. +||.
T Consensus 698 ~~~~~~~--~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~-----------------------sf~EGVD~~g~~l~~viI 751 (850)
T TIGR01407 698 PEFEGYE--VLAQGIN-GSRAKIKKRFNNGEKAILLGTS-----------------------SFWEGVDFPGNGLVCLVI 751 (850)
T ss_pred ccccCce--EEecCCC-ccHHHHHHHHHhCCCeEEEEcc-----------------------eeecccccCCCceEEEEE
Confidence 2333 3333333 5789999999999999999999 999999999876 4666
Q ss_pred CCCCC----C--------------------------cccchhccccccCCCCCceEEEEecc
Q psy16633 364 FDFPL----D--------------------------IQCYIHRAGRTARGKNQGTALSFVSL 395 (540)
Q Consensus 364 ~d~p~----s--------------------------~~~yiqr~GRagR~g~~g~~i~~~~~ 395 (540)
..+|. + ...+.|.+||.-|..++.-++++++.
T Consensus 752 ~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~ 813 (850)
T TIGR01407 752 PRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDR 813 (850)
T ss_pred eCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEcc
Confidence 55552 1 12235899999998776445555543
No 109
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.88 E-value=2e-20 Score=203.00 Aligned_cols=123 Identities=21% Similarity=0.316 Sum_probs=109.3
Q ss_pred HHHHHHHHhcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCccc
Q psy16633 254 TILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQI 333 (540)
Q Consensus 254 ~~l~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~ 333 (540)
.++..+.+....+.++||||+++..++.++..|.+.|+++..+||++++.+|..++..|+.|.++|+|||+
T Consensus 430 ~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~--------- 500 (655)
T TIGR00631 430 DLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGIN--------- 500 (655)
T ss_pred HHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcC---------
Confidence 33344433334567899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCccccccccCCCCCcCEEEeCC-----CCCCcccchhccccccCCCCCceEEEEeccccccc
Q psy16633 334 NSTNNRKRKRDKESGVSRGIDFQFVSNVINFD-----FPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDL 400 (540)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d-----~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e~~~ 400 (540)
.+++|+|+|++++|+++| .|.+..+|+||+|||||. ..|.+++|++..+...
T Consensus 501 --------------~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~ 557 (655)
T TIGR00631 501 --------------LLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSM 557 (655)
T ss_pred --------------hhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHH
Confidence 999999999999999988 799999999999999998 6899999998665443
No 110
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.87 E-value=9.4e-20 Score=195.08 Aligned_cols=266 Identities=17% Similarity=0.245 Sum_probs=176.6
Q ss_pred HHHHHHC-CCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHH
Q psy16633 30 LQAIAKL-GWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLH 108 (540)
Q Consensus 30 ~~~l~~~-g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~ 108 (540)
.+.+.+. || .|...|+--...+++|+++-+.||||.|||. |.+.+- .++. ..|.+++|++||..|+.|++
T Consensus 72 ~~fF~k~~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTT-fg~~~s-l~~a------~kgkr~yii~PT~~Lv~Q~~ 142 (1187)
T COG1110 72 EEFFKKATGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTT-FGLLMS-LYLA------KKGKRVYIIVPTTTLVRQVY 142 (1187)
T ss_pred HHHHHHhhCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhH-HHHHHH-HHHH------hcCCeEEEEecCHHHHHHHH
Confidence 3444444 56 8999999999999999999999999999996 433322 2222 46799999999999999999
Q ss_pred HHHHHHHhhcCCCceEEE-eecCccccc----chhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccC
Q psy16633 109 KNIQELTMKCSRDVKCVD-ISEQVDVSV----QEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSF 183 (540)
Q Consensus 109 ~~l~~l~~~~~~~i~~~~-~~~~~~~~~----~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~ 183 (540)
+.+.+++...+ ...+.. ..+...... ......+..||+|+|.+-|...+..-.- -+++++++|.+|.++..
T Consensus 143 ~kl~~~~e~~~-~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~---~kFdfifVDDVDA~Lka 218 (1187)
T COG1110 143 ERLKKFAEDAG-SLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSK---LKFDFIFVDDVDAILKA 218 (1187)
T ss_pred HHHHHHHhhcC-CcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcc---cCCCEEEEccHHHHHhc
Confidence 99999998876 333333 233322222 2233446799999998877666554211 36899999999976643
Q ss_pred C-----------cHHH-H------HHHHHhC------------------------CcccceeeEeeeccHHH---HHHHH
Q psy16633 184 G-----------YEDD-M------KAVLKFL------------------------PKLYQAILASATLSEDV---LSLKH 218 (540)
Q Consensus 184 ~-----------~~~~-l------~~i~~~l------------------------~~~~q~il~SATl~~~~---~~~~~ 218 (540)
+ |.++ + ..+...+ .+..+.+..|||..+.- .-+..
T Consensus 219 skNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfRe 298 (1187)
T COG1110 219 SKNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRE 298 (1187)
T ss_pred cccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHH
Confidence 2 2211 1 1111111 12357899999986532 22222
Q ss_pred HhcCCCeEEEecCCCCCCCCCeEEEEEEcCcccHHHHHHHHHHhcccCCcEEEEecC---hhhHHHHHHHHHhCCCceEE
Q psy16633 219 LILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTIIFVNT---VDKCYKLKLYLEQFKISTCV 295 (540)
Q Consensus 219 ~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~ll~~~~~~~k~IIF~~s---~~~~~~l~~~L~~~~~~~~~ 295 (540)
+....+- . ......++.+.|+.. .-...+..+++.. +.-.|||++. ++.++.++.+|+..|+++..
T Consensus 299 LlgFevG-----~-~~~~LRNIvD~y~~~---~~~e~~~elvk~l--G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~ 367 (1187)
T COG1110 299 LLGFEVG-----S-GGEGLRNIVDIYVES---ESLEKVVELVKKL--GDGGLIFVPIDYGREKAEELAEYLRSHGINAEL 367 (1187)
T ss_pred HhCCccC-----c-cchhhhheeeeeccC---ccHHHHHHHHHHh--CCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEE
Confidence 2222211 1 111223344444433 3333444455432 3468999999 99999999999999999999
Q ss_pred eCCCCCHHHHHHHHHHHhcCCccEEEeCC
Q psy16633 296 LNSELPAKARCHAVYQFNQGLYDVIIASD 324 (540)
Q Consensus 296 l~~~l~~~~r~~i~~~F~~g~~~iLIaT~ 324 (540)
+|++ ....++.|..|++++||++.
T Consensus 368 ~~a~-----~~~~le~F~~GeidvLVGvA 391 (1187)
T COG1110 368 IHAE-----KEEALEDFEEGEVDVLVGVA 391 (1187)
T ss_pred eecc-----chhhhhhhccCceeEEEEec
Confidence 9985 36789999999999999987
No 111
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.86 E-value=8e-20 Score=199.70 Aligned_cols=142 Identities=18% Similarity=0.250 Sum_probs=117.3
Q ss_pred HHHHHHHhcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccc
Q psy16633 255 ILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQIN 334 (540)
Q Consensus 255 ~l~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~ 334 (540)
++..+......+.++||||++...++.++..|...|+++..+||++++.+|..++..|+.|.+.|+|||+
T Consensus 435 L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~---------- 504 (652)
T PRK05298 435 LLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGIN---------- 504 (652)
T ss_pred HHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeC----------
Confidence 3333333333466899999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCccccccccCCCCCcCEEEeCCC-----CCCcccchhccccccCCCCCceEEEEeccccccccccccchhh
Q psy16633 335 STNNRKRKRDKESGVSRGIDFQFVSNVINFDF-----PLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSF 409 (540)
Q Consensus 335 ~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~-----p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e~~~~~~~~~~~~ 409 (540)
.+++|+|+|++++||++|. |.+..+|+||+|||||. ..|.+++|++..+... .
T Consensus 505 -------------~L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~--------~ 562 (652)
T PRK05298 505 -------------LLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSM--------Q 562 (652)
T ss_pred -------------HHhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHH--------H
Confidence 9999999999999999875 78999999999999996 7899999998543322 1
Q ss_pred hhhhhhHHHHHHHHHHhhc
Q psy16633 410 VSLREQDLMNDVNEYLMTN 428 (540)
Q Consensus 410 ~~~~~~~~~~~i~~~~~~~ 428 (540)
....+...++.|+..++.+
T Consensus 563 ~~~~~~~~~~~i~~~~~~~ 581 (652)
T PRK05298 563 KAIDETERRREIQIAYNEE 581 (652)
T ss_pred HHHHHHHHHHHHHHHhhhc
Confidence 1223444577777776654
No 112
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.86 E-value=5.8e-20 Score=184.51 Aligned_cols=123 Identities=20% Similarity=0.293 Sum_probs=109.6
Q ss_pred cccHHHHHHHHHHhcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCcc
Q psy16633 249 EDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL 328 (540)
Q Consensus 249 ~~~k~~~l~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~ 328 (540)
...-..++..+-+....+.+++|-+-|++.|+.|..+|.+.|+++..+||+...-+|.+++...+.|.++|||.-+
T Consensus 429 ~~QvdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGIN---- 504 (663)
T COG0556 429 KGQVDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGIN---- 504 (663)
T ss_pred CCcHHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeeh----
Confidence 4455666666666555677999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccccccccCccccccccCCCCCcCEEEeCCC-----CCCcccchhccccccCCCCCceEEEEecc
Q psy16633 329 ETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDF-----PLDIQCYIHRAGRTARGKNQGTALSFVSL 395 (540)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~-----p~s~~~yiqr~GRagR~g~~g~~i~~~~~ 395 (540)
.+-+|+|+|.|+.|..+|. ..|..+.+|-+|||+|. -.|.+|.+...
T Consensus 505 -------------------LLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN-~~GkvIlYAD~ 556 (663)
T COG0556 505 -------------------LLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADK 556 (663)
T ss_pred -------------------hhhccCCCcceeEEEEeecCccccccccchHHHHHHHHhhc-cCCeEEEEchh
Confidence 8999999999999998875 46999999999999995 56999988753
No 113
>KOG0923|consensus
Probab=99.85 E-value=7.4e-20 Score=187.12 Aligned_cols=300 Identities=17% Similarity=0.254 Sum_probs=208.3
Q ss_pred HHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHH-----HHhh
Q psy16633 43 LIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQE-----LTMK 117 (540)
Q Consensus 43 ~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~-----l~~~ 117 (540)
++-.+.+.++..+.-++|.|.||||||. .+| |.|.... -...+.++=+.-|.|--|..++..+.+ ++..
T Consensus 268 ~ykdell~av~e~QVLiI~GeTGSGKTT--QiP--QyL~EaG--ytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~e 341 (902)
T KOG0923|consen 268 PYKDELLKAVKEHQVLIIVGETGSGKTT--QIP--QYLYEAG--YTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHE 341 (902)
T ss_pred hhHHHHHHHHHhCcEEEEEcCCCCCccc--ccc--HHHHhcc--cccCCceEeecCcchHHHHHHHHHHHHHhCcccccc
Confidence 3444556666677889999999999996 667 5565431 123456688889999988888766554 4444
Q ss_pred cCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccc-cCC-cHHHHHHHHHh
Q psy16633 118 CSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVF-SFG-YEDDMKAVLKF 195 (540)
Q Consensus 118 ~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~-~~~-~~~~l~~i~~~ 195 (540)
+|..|+.-..++ .+.-|-++|.|+|+.-+..... + .+.++|||||||.-. .-. .-..+..|. .
T Consensus 342 VGYsIRFEdcTS------------ekTvlKYMTDGmLlREfL~epd-L-asYSViiiDEAHERTL~TDILfgLvKDIa-r 406 (902)
T KOG0923|consen 342 VGYSIRFEDCTS------------EKTVLKYMTDGMLLREFLSEPD-L-ASYSVIIVDEAHERTLHTDILFGLVKDIA-R 406 (902)
T ss_pred cceEEEeccccC------------cceeeeeecchhHHHHHhcccc-c-cceeEEEeehhhhhhhhhhHHHHHHHHHH-h
Confidence 444455444333 3456779999999887765543 3 889999999999321 110 011222233 2
Q ss_pred CCcccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcCcccHHHH-HHHHHHhc--ccCCcEEEE
Q psy16633 196 LPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATI-LYTLLKLN--LVQGKTIIF 272 (540)
Q Consensus 196 l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~~~k~~~-l~~ll~~~--~~~~k~IIF 272 (540)
..+...++++|||+..+ .+... +.+.-+..+.....+ +.-+|-..++.+-... +..+++.+ .+.|-+|||
T Consensus 407 ~RpdLKllIsSAT~DAe--kFS~f-FDdapIF~iPGRRyP----Vdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVF 479 (902)
T KOG0923|consen 407 FRPDLKLLISSATMDAE--KFSAF-FDDAPIFRIPGRRYP----VDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVF 479 (902)
T ss_pred hCCcceEEeeccccCHH--HHHHh-ccCCcEEeccCcccc----eeeecccCCchhHHHHHHhhheeeEeccCCccEEEE
Confidence 34567899999999753 34443 444434444433332 4456666666555444 33444432 345789999
Q ss_pred ecChhhHHHHHHHHHhC----C-----CceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCccccccccccccc
Q psy16633 273 VNTVDKCYKLKLYLEQF----K-----ISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKR 343 (540)
Q Consensus 273 ~~s~~~~~~l~~~L~~~----~-----~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~ 343 (540)
....+..+.....|.+. | +-++.+|+.||...+..|++---.|.-+|++||+
T Consensus 480 ltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATN------------------- 540 (902)
T KOG0923|consen 480 LTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATN------------------- 540 (902)
T ss_pred eccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeec-------------------
Confidence 99998887777766542 2 4567889999999999999999999999999999
Q ss_pred CccccccccCCCCCcCEEEeCCC------------------CCCcccchhccccccCCCCCceEEEEec
Q psy16633 344 DKESGVSRGIDFQFVSNVINFDF------------------PLDIQCYIHRAGRTARGKNQGTALSFVS 394 (540)
Q Consensus 344 ~~~~~~~~GiD~~~v~~Vi~~d~------------------p~s~~~yiqr~GRagR~g~~g~~i~~~~ 394 (540)
.++..+.+++|.+||+-++ |-|-.+-.||+|||||.| +|.|+-+++
T Consensus 541 ----IAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt 604 (902)
T KOG0923|consen 541 ----IAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYT 604 (902)
T ss_pred ----chhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeec
Confidence 8889999999999997443 346677789999999986 899999998
No 114
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.85 E-value=4.3e-20 Score=200.60 Aligned_cols=127 Identities=19% Similarity=0.179 Sum_probs=111.6
Q ss_pred cCcccHHHHHHHHHHh-cccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCC
Q psy16633 247 AQEDEKATILYTLLKL-NLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE 325 (540)
Q Consensus 247 ~~~~~k~~~l~~ll~~-~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~ 325 (540)
....+|+..+...+.. ...+.++||||+|+..++.|+..|.+.|+++.++|+ .+.+|+..+..|..+...|+||||
T Consensus 578 ~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATN- 654 (1025)
T PRK12900 578 KTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATN- 654 (1025)
T ss_pred cCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEecc-
Confidence 3345677777766643 345679999999999999999999999999999997 688999999999999999999999
Q ss_pred CccCCcccccccccccccCccccccccCCCC---CcC-----EEEeCCCCCCcccchhccccccCCCCCceEEEEecccc
Q psy16633 326 KALETPQINSTNNRKRKRDKESGVSRGIDFQ---FVS-----NVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLRE 397 (540)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~---~v~-----~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e 397 (540)
+++||+|++ .|. +||+++.|.|...|.||+|||||.|.+|.+++|++.+|
T Consensus 655 ----------------------MAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD 712 (1025)
T PRK12900 655 ----------------------MAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLED 712 (1025)
T ss_pred ----------------------CcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhH
Confidence 999999999 554 45999999999999999999999999999999999766
Q ss_pred c
Q psy16633 398 Q 398 (540)
Q Consensus 398 ~ 398 (540)
.
T Consensus 713 ~ 713 (1025)
T PRK12900 713 E 713 (1025)
T ss_pred H
Confidence 3
No 115
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.84 E-value=2.3e-19 Score=167.64 Aligned_cols=188 Identities=32% Similarity=0.446 Sum_probs=148.9
Q ss_pred HCCCCCChHHHHHHHHHHhcC-CcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHH
Q psy16633 35 KLGWLEPTLIQERAIPLILQN-KDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQE 113 (540)
Q Consensus 35 ~~g~~~pt~~Q~~ai~~il~g-kd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~ 113 (540)
..++..|+++|.++++.+..+ +.+++.++||+|||.++..+++..+.. ....+++|++|+++++.|+...+..
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~------~~~~~~l~~~p~~~~~~~~~~~~~~ 76 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKR------GKGKRVLVLVPTRELAEQWAEELKK 76 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcc------cCCCcEEEEeCCHHHHHHHHHHHHH
Confidence 356789999999999999998 999999999999999999998887743 2257899999999999999999988
Q ss_pred HHhhcCCCceEEEeecCcccccchhhhhCCC-CEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCCcHHHHHHH
Q psy16633 114 LTMKCSRDVKCVDISEQVDVSVQEPLLVERP-DIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAV 192 (540)
Q Consensus 114 l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~-~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i 192 (540)
++.... ......+ ++.........+.... +++++|++.+.+.+....... ..++++|+||+|.+....+...+..+
T Consensus 77 ~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~-~~~~~iIiDE~h~~~~~~~~~~~~~~ 153 (201)
T smart00487 77 LGPSLG-LKVVGLY-GGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLEL-SNVDLVILDEAHRLLDGGFGDQLEKL 153 (201)
T ss_pred HhccCC-eEEEEEe-CCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCH-hHCCEEEEECHHHHhcCCcHHHHHHH
Confidence 775431 1222333 3333222222233444 999999999999988866444 78999999999988876788888899
Q ss_pred HHhCCcccceeeEeeeccHHHHHHHHHhcCCCeEEEecC
Q psy16633 193 LKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEE 231 (540)
Q Consensus 193 ~~~l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~ 231 (540)
+..+++..+++++|||+++........+..++..+....
T Consensus 154 ~~~~~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~~ 192 (201)
T smart00487 154 LKLLPKNVQLLLLSATPPEEIENLLELFLNDPVFIDVGP 192 (201)
T ss_pred HHhCCccceEEEEecCCchhHHHHHHHhcCCCEEEeCCc
Confidence 888888899999999999999988888888777666553
No 116
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.83 E-value=1.8e-18 Score=183.26 Aligned_cols=319 Identities=18% Similarity=0.153 Sum_probs=214.2
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHH
Q psy16633 36 LGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELT 115 (540)
Q Consensus 36 ~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~ 115 (540)
+|. .|+++|--..-.+++|+ ++.+.||+|||+++.+|++...+ .|..|-|++|+--||.|-++.+..+.
T Consensus 75 lg~-r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL--------~G~~VhvvT~NdyLA~RDae~m~~ly 143 (764)
T PRK12326 75 LGL-RPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYAL--------QGRRVHVITVNDYLARRDAEWMGPLY 143 (764)
T ss_pred cCC-CcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHH--------cCCCeEEEcCCHHHHHHHHHHHHHHH
Confidence 476 89999999988888774 88999999999999999887664 47789999999999999999999999
Q ss_pred hhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHH-----HHHHhcC-cCCccCCccEEEEcCccccc-cC-----
Q psy16633 116 MKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARA-----LAHLKAK-TLDLKSSLEIVIIDEADLVF-SF----- 183 (540)
Q Consensus 116 ~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l-----~~~l~~~-~~~~~~~l~~lViDEah~l~-~~----- 183 (540)
..+ ++++..+.++.+....+..+ .+||+++|..-+ .+.+... .......+.+.||||+|.++ |.
T Consensus 144 ~~L--GLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPL 219 (764)
T PRK12326 144 EAL--GLTVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPL 219 (764)
T ss_pred Hhc--CCEEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCce
Confidence 887 78888888776554433333 689999998753 3333211 11122678899999999755 10
Q ss_pred ---------CcHHHHHHHHHhCCcc-------------------------------------------------------
Q psy16633 184 ---------GYEDDMKAVLKFLPKL------------------------------------------------------- 199 (540)
Q Consensus 184 ---------~~~~~l~~i~~~l~~~------------------------------------------------------- 199 (540)
.....+..+...+...
T Consensus 220 iISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~ 299 (764)
T PRK12326 220 VLAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQ 299 (764)
T ss_pred eeeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHh
Confidence 0111122222222110
Q ss_pred ---------------------------------------------------------------cceeeEeeeccHHHHHH
Q psy16633 200 ---------------------------------------------------------------YQAILASATLSEDVLSL 216 (540)
Q Consensus 200 ---------------------------------------------------------------~q~il~SATl~~~~~~~ 216 (540)
..+.+||.|.......+
T Consensus 300 ~d~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef 379 (764)
T PRK12326 300 RDVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQL 379 (764)
T ss_pred cCCcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHH
Confidence 02344555554444444
Q ss_pred HHHhcCCCeEEEecCCCCCCCCCeEEEEEEcCcccHHHHH-HHHHHhcccCCcEEEEecChhhHHHHHHHHHhCCCceEE
Q psy16633 217 KHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATIL-YTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCV 295 (540)
Q Consensus 217 ~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~~~k~~~l-~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~ 295 (540)
...+--+- +.+........... .-.+......|+..+ ..+.+....+.|+||.+.|+..++.+...|.+.|++..+
T Consensus 380 ~~iY~l~V--v~IPtnkp~~R~d~-~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~v 456 (764)
T PRK12326 380 RQFYDLGV--SVIPPNKPNIREDE-ADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVV 456 (764)
T ss_pred HHHhCCcE--EECCCCCCceeecC-CCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCccee
Confidence 33332221 11111100000000 112233344555544 444455566779999999999999999999999999999
Q ss_pred eCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccccccccccCccccccccCCCCC----------c-----CE
Q psy16633 296 LNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQF----------V-----SN 360 (540)
Q Consensus 296 l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~----------v-----~~ 360 (540)
+|+.-...+ ..++.+ ....-.|-|||+ +++||.|+.= | =+
T Consensus 457 LNAk~~~~E-A~IIa~-AG~~gaVTIATN-----------------------MAGRGTDIkLg~~~~~~~~~V~~~GGLh 511 (764)
T PRK12326 457 LNAKNDAEE-ARIIAE-AGKYGAVTVSTQ-----------------------MAGRGTDIRLGGSDEADRDRVAELGGLH 511 (764)
T ss_pred eccCchHhH-HHHHHh-cCCCCcEEEEec-----------------------CCCCccCeecCCCcccchHHHHHcCCcE
Confidence 998744322 333332 222457999999 9999999861 1 27
Q ss_pred EEeCCCCCCcccchhccccccCCCCCceEEEEecccc
Q psy16633 361 VINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLRE 397 (540)
Q Consensus 361 Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e 397 (540)
||-...+.|..-=-|-.||+||.|.+|.+-.|++-+|
T Consensus 512 VIgTerheSrRID~QLrGRaGRQGDpGss~f~lSleD 548 (764)
T PRK12326 512 VIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFVSLED 548 (764)
T ss_pred EEeccCCchHHHHHHHhcccccCCCCCceeEEEEcch
Confidence 8888889998888999999999999999999998554
No 117
>KOG0926|consensus
Probab=99.82 E-value=1.2e-18 Score=181.54 Aligned_cols=315 Identities=20% Similarity=0.213 Sum_probs=204.3
Q ss_pred CCChHHHHH------------HHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcc--cccCCCeEEEEEcCcHHHH
Q psy16633 39 LEPTLIQER------------AIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQ--TAQVQETKALVLSPSKELC 104 (540)
Q Consensus 39 ~~pt~~Q~~------------ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~--~~~~~~~~vlil~Pt~~La 104 (540)
.+|+.+|.. ....|.++--+||++.||||||. .+| |.|+.+.- .....+..+=|.-|.|--|
T Consensus 243 ~R~~EIQ~sR~~LPI~aeEq~IMEaIn~n~vvIIcGeTGsGKTT--QvP--QFLYEAGf~s~~~~~~gmIGITqPRRVAa 318 (1172)
T KOG0926|consen 243 SRPAEIQESRLDLPIVAEEQRIMEAINENPVVIICGETGSGKTT--QVP--QFLYEAGFASEQSSSPGMIGITQPRRVAA 318 (1172)
T ss_pred cCcHHHHHHHhcCchhHHHHHHHHHhhcCCeEEEecCCCCCccc--cch--HHHHHcccCCccCCCCCeeeecCchHHHH
Confidence 456677753 34444445559999999999996 666 55665321 1123356778889999777
Q ss_pred HHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCC
Q psy16633 105 NQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFG 184 (540)
Q Consensus 105 ~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~ 184 (540)
..++++..--....+..+.+..-+.+. ......|-++|-|.|+.-+.+..+. ...+.||+||||. ..
T Consensus 319 iamAkRVa~EL~~~~~eVsYqIRfd~t--------i~e~T~IkFMTDGVLLrEi~~DflL--~kYSvIIlDEAHE---RS 385 (1172)
T KOG0926|consen 319 IAMAKRVAFELGVLGSEVSYQIRFDGT--------IGEDTSIKFMTDGVLLREIENDFLL--TKYSVIILDEAHE---RS 385 (1172)
T ss_pred HHHHHHHHHHhccCccceeEEEEeccc--------cCCCceeEEecchHHHHHHHHhHhh--hhceeEEechhhh---cc
Confidence 776655443222244445544443332 1245689999999999988876543 8899999999993 22
Q ss_pred -cHHHHHHHHHhC-------Cc------ccceeeEeeeccHH-HHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcCc
Q psy16633 185 -YEDDMKAVLKFL-------PK------LYQAILASATLSED-VLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQE 249 (540)
Q Consensus 185 -~~~~l~~i~~~l-------~~------~~q~il~SATl~~~-~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~ 249 (540)
+.+.+..+++++ .+ ....|+||||+.-. ...-+.++-.-|-+++++...++. -.|+.-..+.
T Consensus 386 vnTDILiGmLSRiV~LR~k~~ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQfPV---sIHF~krT~~ 462 (1172)
T KOG0926|consen 386 VNTDILIGMLSRIVPLRQKYYKEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQFPV---SIHFNKRTPD 462 (1172)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhcccCceeEEEEeeeEEecccccCceecCCCCceeeeecccCce---EEEeccCCCc
Confidence 222333333322 11 35689999998632 222334443344577777655432 1233222333
Q ss_pred ccHHHHHHHHHH--hcccCCcEEEEecChhhHHHHHHHHHhC-----C-C------------------------------
Q psy16633 250 DEKATILYTLLK--LNLVQGKTIIFVNTVDKCYKLKLYLEQF-----K-I------------------------------ 291 (540)
Q Consensus 250 ~~k~~~l~~ll~--~~~~~~k~IIF~~s~~~~~~l~~~L~~~-----~-~------------------------------ 291 (540)
+.-.......++ ..++.|-+|||+-...++..|...|++. + .
T Consensus 463 DYi~eAfrKtc~IH~kLP~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~ 542 (1172)
T KOG0926|consen 463 DYIAEAFRKTCKIHKKLPPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEE 542 (1172)
T ss_pred hHHHHHHHHHHHHhhcCCCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchh
Confidence 222222222222 2567899999999999999998888753 1 0
Q ss_pred ---------------------------------------------------------------ceEEeCCCCCHHHHHHH
Q psy16633 292 ---------------------------------------------------------------STCVLNSELPAKARCHA 308 (540)
Q Consensus 292 ---------------------------------------------------------------~~~~l~~~l~~~~r~~i 308 (540)
-|..+++-|+...+..+
T Consensus 543 Ed~~~~~ed~d~~~~~~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RV 622 (1172)
T KOG0926|consen 543 EDMYESDEDIDQELVDSGFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRV 622 (1172)
T ss_pred cccccchhhhhhhhhcccchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhh
Confidence 34456677777888888
Q ss_pred HHHHhcCCccEEEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEe--------CCCCCCcccc-------
Q psy16633 309 VYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVIN--------FDFPLDIQCY------- 373 (540)
Q Consensus 309 ~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~--------~d~p~s~~~y------- 373 (540)
++.-..|.--++|||+ +++..+.+|++.+|++ ||--....+|
T Consensus 623 F~~~p~g~RLcVVaTN-----------------------VAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSk 679 (1172)
T KOG0926|consen 623 FDEVPKGERLCVVATN-----------------------VAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISK 679 (1172)
T ss_pred ccCCCCCceEEEEecc-----------------------chhcccccCCeeEEEeccchhhhccccccCceeEEEEeeec
Confidence 8877888888999999 8999999999999996 5544444444
Q ss_pred ---hhccccccCCCCCceEEEEecccc
Q psy16633 374 ---IHRAGRTARGKNQGTALSFVSLRE 397 (540)
Q Consensus 374 ---iqr~GRagR~g~~g~~i~~~~~~e 397 (540)
-||+|||||.| +|.|+-+++..-
T Consensus 680 ASadQRAGRAGRtg-pGHcYRLYSSAV 705 (1172)
T KOG0926|consen 680 ASADQRAGRAGRTG-PGHCYRLYSSAV 705 (1172)
T ss_pred cccchhccccCCCC-CCceeehhhhHH
Confidence 59999999986 799999998543
No 118
>KOG0949|consensus
Probab=99.82 E-value=1.1e-18 Score=185.20 Aligned_cols=165 Identities=17% Similarity=0.184 Sum_probs=121.4
Q ss_pred CCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHh
Q psy16633 37 GWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTM 116 (540)
Q Consensus 37 g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~ 116 (540)
+| .|-.||++.+..+-+++..+|.|||.+|||.+ -.-.+++.+.. ....-+|++.||++|..|+.-.+..-+.
T Consensus 509 dF-~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfi-sfY~iEKVLRe-----sD~~VVIyvaPtKaLVnQvsa~VyaRF~ 581 (1330)
T KOG0949|consen 509 DF-CPDEWQRELLDSVDRNESAVIVAPTSAGKTFI-SFYAIEKVLRE-----SDSDVVIYVAPTKALVNQVSANVYARFD 581 (1330)
T ss_pred cc-CCcHHHHHHhhhhhcccceEEEeeccCCceec-cHHHHHHHHhh-----cCCCEEEEecchHHHhhhhhHHHHHhhc
Confidence 35 68899999999999999999999999999985 33445565553 4678899999999999999877665441
Q ss_pred hcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcC--cCCccCCccEEEEcCccccccCCcHHHHHHHHH
Q psy16633 117 KCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAK--TLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLK 194 (540)
Q Consensus 117 ~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~--~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~ 194 (540)
.. .-.+...+.|....+.+.. .-.+.|+|+-|+.+-.++-+. ...+..+++++|+||+|++....-+.-++.++-
T Consensus 582 ~~-t~~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~ 658 (1330)
T KOG0949|consen 582 TK-TFLRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLL 658 (1330)
T ss_pred cC-ccccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHH
Confidence 11 1122223333332222221 126899999999999988774 234558999999999999988766677777777
Q ss_pred hCCcccceeeEeeeccHHH
Q psy16633 195 FLPKLYQAILASATLSEDV 213 (540)
Q Consensus 195 ~l~~~~q~il~SATl~~~~ 213 (540)
..| |.++.+|||+.+..
T Consensus 659 li~--CP~L~LSATigN~~ 675 (1330)
T KOG0949|consen 659 LIP--CPFLVLSATIGNPN 675 (1330)
T ss_pred hcC--CCeeEEecccCCHH
Confidence 776 78999999987543
No 119
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.81 E-value=2.1e-18 Score=189.26 Aligned_cols=302 Identities=19% Similarity=0.182 Sum_probs=177.7
Q ss_pred CChHHHHHHHHHHhc----------CCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHH
Q psy16633 40 EPTLIQERAIPLILQ----------NKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHK 109 (540)
Q Consensus 40 ~pt~~Q~~ai~~il~----------gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~ 109 (540)
-|+..|..|+..+.. .+..++.++||||||++.+..+ ..++.. ....++||+||+++|..|+.+
T Consensus 238 ~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la-~~l~~~-----~~~~~vl~lvdR~~L~~Q~~~ 311 (667)
T TIGR00348 238 YQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAA-RKALEL-----LKNPKVFFVVDRRELDYQLMK 311 (667)
T ss_pred ehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHH-HHHHhh-----cCCCeEEEEECcHHHHHHHHH
Confidence 378899999987643 2469999999999998755444 344321 356899999999999999999
Q ss_pred HHHHHHhhcCCCceEEEeecCcccccchhhh-hCCCCEEEEChHHHHHHHhcC--cCCccCCccEEEEcCccccccCCcH
Q psy16633 110 NIQELTMKCSRDVKCVDISEQVDVSVQEPLL-VERPDIVVATPARALAHLKAK--TLDLKSSLEIVIIDEADLVFSFGYE 186 (540)
Q Consensus 110 ~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l-~~~~~Ivv~Tp~~l~~~l~~~--~~~~~~~l~~lViDEah~l~~~~~~ 186 (540)
.+..++..+ .. +..+.......+ .....|+|+|.+.+...+... .......--+||+||||+.....+.
T Consensus 312 ~f~~~~~~~---~~-----~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~~~ 383 (667)
T TIGR00348 312 EFQSLQKDC---AE-----RIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGELA 383 (667)
T ss_pred HHHhhCCCC---Cc-----ccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchHHH
Confidence 999876422 00 001111111222 234689999999987644331 1111011128999999976433222
Q ss_pred HHHHHHHHhCCcccceeeEeeeccHHHHHH-HHHhc--CCCeEEEecCCCCCCCCCeEE--EEEEcC-------------
Q psy16633 187 DDMKAVLKFLPKLYQAILASATLSEDVLSL-KHLIL--RNPVILKLEEPAIAPVSQLAH--YHILAQ------------- 248 (540)
Q Consensus 187 ~~l~~i~~~l~~~~q~il~SATl~~~~~~~-~~~~l--~~p~~i~~~~~~~~~~~~l~~--~~~~~~------------- 248 (540)
..+...+|. ...++||||+-...... ...+. ..+.+....-.+.....-+.. |.....
T Consensus 384 ---~~l~~~~p~-a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~ 459 (667)
T TIGR00348 384 ---KNLKKALKN-ASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFF 459 (667)
T ss_pred ---HHHHhhCCC-CcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccChHHHHHHH
Confidence 233345664 57999999995321110 01111 111221211110000000000 100000
Q ss_pred ------------cccH--------------------HHHHHHHH----Hh-cccCCcEEEEecChhhHHHHHHHHHhC--
Q psy16633 249 ------------EDEK--------------------ATILYTLL----KL-NLVQGKTIIFVNTVDKCYKLKLYLEQF-- 289 (540)
Q Consensus 249 ------------~~~k--------------------~~~l~~ll----~~-~~~~~k~IIF~~s~~~~~~l~~~L~~~-- 289 (540)
+..+ ......++ +. ....++++|||.++..|..++..|.+.
T Consensus 460 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~ 539 (667)
T TIGR00348 460 DEIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELN 539 (667)
T ss_pred HHHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcc
Confidence 0000 00001111 11 112479999999999999999988664
Q ss_pred ---CCceEEeCCCCCHH---------------------HHHHHHHHHhc-CCccEEEeCCCCccCCcccccccccccccC
Q psy16633 290 ---KISTCVLNSELPAK---------------------ARCHAVYQFNQ-GLYDVIIASDEKALETPQINSTNNRKRKRD 344 (540)
Q Consensus 290 ---~~~~~~l~~~l~~~---------------------~r~~i~~~F~~-g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~ 344 (540)
+..+.++++..+.. ....++++|+. +..+|||++|
T Consensus 540 ~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvd-------------------- 599 (667)
T TIGR00348 540 EKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVD-------------------- 599 (667)
T ss_pred cccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEc--------------------
Confidence 23455565543222 12468889966 6889999999
Q ss_pred ccccccccCCCCCcCEEEeCCCCCCcccchhccccccCC
Q psy16633 345 KESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARG 383 (540)
Q Consensus 345 ~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~ 383 (540)
.+..|+|.|.+++++..- |...-.++|.+||+-|.
T Consensus 600 ---mllTGFDaP~l~tLyldK-plk~h~LlQai~R~nR~ 634 (667)
T TIGR00348 600 ---MLLTGFDAPILNTLYLDK-PLKYHGLLQAIARTNRI 634 (667)
T ss_pred ---ccccccCCCccceEEEec-cccccHHHHHHHHhccc
Confidence 999999999999877554 44445689999999993
No 120
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.81 E-value=9.5e-19 Score=184.91 Aligned_cols=296 Identities=19% Similarity=0.232 Sum_probs=193.0
Q ss_pred CCChHHHHHHHHHHhc----CC-cEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHH
Q psy16633 39 LEPTLIQERAIPLILQ----NK-DVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQE 113 (540)
Q Consensus 39 ~~pt~~Q~~ai~~il~----gk-d~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~ 113 (540)
..|+.+|..||..+.+ |+ .+|+.+.||+|||.+ .+.++..|++. ....|+|+|+-+++|..|.+..+..
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrT-Aiaii~rL~r~-----~~~KRVLFLaDR~~Lv~QA~~af~~ 237 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRT-AIAIIDRLIKS-----GWVKRVLFLADRNALVDQAYGAFED 237 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCccee-HHHHHHHHHhc-----chhheeeEEechHHHHHHHHHHHHH
Confidence 3689999999976654 44 499999999999986 56677777663 4678999999999999999988887
Q ss_pred HHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcC-----cCCccCCccEEEEcCccccccCCcHHH
Q psy16633 114 LTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAK-----TLDLKSSLEIVIIDEADLVFSFGYEDD 188 (540)
Q Consensus 114 l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~-----~~~~~~~l~~lViDEah~l~~~~~~~~ 188 (540)
+.... -.+..+.+.. .. ..++|.++|...+...+... .+.. ..+++|||||||+ |....
T Consensus 238 ~~P~~---~~~n~i~~~~-~~-------~s~~i~lsTyqt~~~~~~~~~~~~~~f~~-g~FDlIvIDEaHR----gi~~~ 301 (875)
T COG4096 238 FLPFG---TKMNKIEDKK-GD-------TSSEIYLSTYQTMTGRIEQKEDEYRRFGP-GFFDLIVIDEAHR----GIYSE 301 (875)
T ss_pred hCCCc---cceeeeeccc-CC-------cceeEEEeehHHHHhhhhccccccccCCC-CceeEEEechhhh----hHHhh
Confidence 76432 2222222211 11 24689999999998887654 2333 5699999999994 34455
Q ss_pred HHHHHHhCCcccceeeEeeeccHHHHHHHHHhc-CCCeE------------------EEec----CCCCCCCCC------
Q psy16633 189 MKAVLKFLPKLYQAILASATLSEDVLSLKHLIL-RNPVI------------------LKLE----EPAIAPVSQ------ 239 (540)
Q Consensus 189 l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~l-~~p~~------------------i~~~----~~~~~~~~~------ 239 (540)
+..|+.++....|. ++||+.+.+..-.-.++ ..|+. +.+. .........
T Consensus 302 ~~~I~dYFdA~~~g--LTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~ 379 (875)
T COG4096 302 WSSILDYFDAATQG--LTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKL 379 (875)
T ss_pred hHHHHHHHHHHHHh--hccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhh
Confidence 66788877655333 39998875543333333 33322 1111 111000000
Q ss_pred ----e--EEEEEEcCc--------ccH---HHHHHHHHHh---cccCCcEEEEecChhhHHHHHHHHHhC-----CCceE
Q psy16633 240 ----L--AHYHILAQE--------DEK---ATILYTLLKL---NLVQGKTIIFVNTVDKCYKLKLYLEQF-----KISTC 294 (540)
Q Consensus 240 ----l--~~~~~~~~~--------~~k---~~~l~~ll~~---~~~~~k~IIF~~s~~~~~~l~~~L~~~-----~~~~~ 294 (540)
+ ........+ ..+ ...+...++. +..-+|+||||.+.++|+++...|... |--++
T Consensus 380 ~g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~ 459 (875)
T COG4096 380 QGEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAM 459 (875)
T ss_pred hccccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEE
Confidence 0 000000000 011 1122333332 112469999999999999999999764 23455
Q ss_pred EeCCCCCHHHHHHHHHHHhc--CCccEEEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEeCCCCCCccc
Q psy16633 295 VLNSELPAKARCHAVYQFNQ--GLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQC 372 (540)
Q Consensus 295 ~l~~~l~~~~r~~i~~~F~~--g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~ 372 (540)
.+.++-.+. ...+..|.. .--+|.|+.| .+..|||+|.|.+++.+-.-.|..-
T Consensus 460 ~IT~d~~~~--q~~Id~f~~ke~~P~Iaitvd-----------------------lL~TGiDvpev~nlVF~r~VrSktk 514 (875)
T COG4096 460 KITGDAEQA--QALIDNFIDKEKYPRIAITVD-----------------------LLTTGVDVPEVVNLVFDRKVRSKTK 514 (875)
T ss_pred EEeccchhh--HHHHHHHHhcCCCCceEEehh-----------------------hhhcCCCchheeeeeehhhhhhHHH
Confidence 666664433 334455533 4456888888 9999999999999999999999999
Q ss_pred chhccccccCC
Q psy16633 373 YIHRAGRTARG 383 (540)
Q Consensus 373 yiqr~GRagR~ 383 (540)
|.|++||.-|.
T Consensus 515 F~QMvGRGTRl 525 (875)
T COG4096 515 FKQMVGRGTRL 525 (875)
T ss_pred HHHHhcCcccc
Confidence 99999998884
No 121
>KOG0924|consensus
Probab=99.80 E-value=4.3e-18 Score=174.62 Aligned_cols=300 Identities=19% Similarity=0.250 Sum_probs=199.5
Q ss_pred hHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHH-----h
Q psy16633 42 TLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELT-----M 116 (540)
Q Consensus 42 t~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~-----~ 116 (540)
..++.+.+..+..+.-++|.+.||||||. .+| |.|+... =...+.+-+.-|.|.-|..+++.+..-. .
T Consensus 358 f~~R~~ll~~ir~n~vvvivgETGSGKTT--Ql~--QyL~edG---Y~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~ 430 (1042)
T KOG0924|consen 358 FACRDQLLSVIRENQVVVIVGETGSGKTT--QLA--QYLYEDG---YADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGD 430 (1042)
T ss_pred HHHHHHHHHHHhhCcEEEEEecCCCCchh--hhH--HHHHhcc---cccCCeeeecCchHHHHHHHHHHHHHHhCCcccc
Confidence 45677777778788889999999999997 333 5555421 1234567777899999988887766532 2
Q ss_pred hcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCCcH-HHHHHHHHh
Q psy16633 117 KCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYE-DDMKAVLKF 195 (540)
Q Consensus 117 ~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~~-~~l~~i~~~ 195 (540)
..|..|+...+++ ....|-+.|-|.|+.-.-.... + ...++||+||||.- ... +.+..+++.
T Consensus 431 ~VGYsIRFEdvT~------------~~T~IkymTDGiLLrEsL~d~~-L-~kYSviImDEAHER---slNtDilfGllk~ 493 (1042)
T KOG0924|consen 431 TVGYSIRFEDVTS------------EDTKIKYMTDGILLRESLKDRD-L-DKYSVIIMDEAHER---SLNTDILFGLLKK 493 (1042)
T ss_pred ccceEEEeeecCC------------CceeEEEeccchHHHHHhhhhh-h-hheeEEEechhhhc---ccchHHHHHHHHH
Confidence 2233333333333 3456889999998775443332 2 78999999999932 222 122222222
Q ss_pred ---CCcccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcCcccHHH-HHHHHHHh--cccCCcE
Q psy16633 196 ---LPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKAT-ILYTLLKL--NLVQGKT 269 (540)
Q Consensus 196 ---l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~~~k~~-~l~~ll~~--~~~~~k~ 269 (540)
-.....+|.+|||+.. +.+...+.+-|. ..+....++ +.-.+...+-++-.+ .+...+.. ....|.+
T Consensus 494 ~larRrdlKliVtSATm~a--~kf~nfFgn~p~-f~IpGRTyP----V~~~~~k~p~eDYVeaavkq~v~Ihl~~~~Gdi 566 (1042)
T KOG0924|consen 494 VLARRRDLKLIVTSATMDA--QKFSNFFGNCPQ-FTIPGRTYP----VEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDI 566 (1042)
T ss_pred HHHhhccceEEEeeccccH--HHHHHHhCCCce-eeecCCccc----eEEEeccCchHHHHHHHHhhheEeeccCCCCCE
Confidence 2346789999999975 344444443343 333333222 222333333333222 22222222 2345789
Q ss_pred EEEecChhh----HHHHHHHHHhC------CCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCccccccccc
Q psy16633 270 IIFVNTVDK----CYKLKLYLEQF------KISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNR 339 (540)
Q Consensus 270 IIF~~s~~~----~~~l~~~L~~~------~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~ 339 (540)
|||....+. |..+...|.+. ++.+..+++.||...+..+++.-..|.-+++|||+
T Consensus 567 lIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATN--------------- 631 (1042)
T KOG0924|consen 567 LIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATN--------------- 631 (1042)
T ss_pred EEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEecc---------------
Confidence 999988765 44555555443 57788999999999999999999999999999999
Q ss_pred ccccCccccccccCCCCCcCEEEeCCC------------------CCCcccchhccccccCCCCCceEEEEeccc
Q psy16633 340 KRKRDKESGVSRGIDFQFVSNVINFDF------------------PLDIQCYIHRAGRTARGKNQGTALSFVSLR 396 (540)
Q Consensus 340 ~~~~~~~~~~~~GiD~~~v~~Vi~~d~------------------p~s~~~yiqr~GRagR~g~~g~~i~~~~~~ 396 (540)
+++..+.++++.+||+.+. |-|-.+--||.|||||.| +|.|+-+++..
T Consensus 632 --------IAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 632 --------IAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTED 697 (1042)
T ss_pred --------chhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCC-Ccceeeehhhh
Confidence 8889999999999997543 556777789999999975 89999999863
No 122
>KOG4150|consensus
Probab=99.79 E-value=1.5e-18 Score=174.60 Aligned_cols=336 Identities=14% Similarity=0.073 Sum_probs=235.3
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHH
Q psy16633 29 PLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLH 108 (540)
Q Consensus 29 i~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~ 108 (540)
+...+.++.......+|.++|..+.+|+++++.-.|.+||+++|.......++. .+....+++.|++++++...
T Consensus 275 ~~~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~------~~~s~~~~~~~~~~~~~~~~ 348 (1034)
T KOG4150|consen 275 IRSLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTL------CHATNSLLPSEMVEHLRNGS 348 (1034)
T ss_pred HHHHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhc------CcccceecchhHHHHhhccC
Confidence 445566667778889999999999999999999999999999999988776654 46677899999999987655
Q ss_pred HHHHHHHhhcCC-CceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCc---cCCccEEEEcCccccccCC
Q psy16633 109 KNIQELTMKCSR-DVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDL---KSSLEIVIIDEADLVFSFG 184 (540)
Q Consensus 109 ~~l~~l~~~~~~-~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~---~~~l~~lViDEah~l~~~~ 184 (540)
+.+.-....... .-.++..+.+............+.+++++.|..+....-.+...+ .-...+++.||+|.....
T Consensus 349 ~~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~- 427 (1034)
T KOG4150|consen 349 KGQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFP- 427 (1034)
T ss_pred CceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecc-
Confidence 432221111100 112233333333344445556688999999998766543332221 135678999999966543
Q ss_pred cH----HHHHHHHHhCC-----cccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcC------c
Q psy16633 185 YE----DDMKAVLKFLP-----KLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQ------E 249 (540)
Q Consensus 185 ~~----~~l~~i~~~l~-----~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~------~ 249 (540)
+. ..++.++..+. .+.|++-.|||+.+.++.....+.-+.+.+...... +..-+++.+..+ +
T Consensus 428 ~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGS---Ps~~K~~V~WNP~~~P~~~ 504 (1034)
T KOG4150|consen 428 TKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGS---PSSEKLFVLWNPSAPPTSK 504 (1034)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCC---CCccceEEEeCCCCCCcch
Confidence 33 33444444332 367999999999999888877765555443332221 122334444332 1
Q ss_pred ccHH-------HHHHHHHHhcccCCcEEEEecChhhHHHHHHHHHhC----C----CceEEeCCCCCHHHHHHHHHHHhc
Q psy16633 250 DEKA-------TILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQF----K----ISTCVLNSELPAKARCHAVYQFNQ 314 (540)
Q Consensus 250 ~~k~-------~~l~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~----~----~~~~~l~~~l~~~~r~~i~~~F~~ 314 (540)
..+. .++..++. .+-++|-||+++.-|+-+....+.. + -.+..+.||....+|..|..+.-.
T Consensus 505 ~~~~~~i~E~s~~~~~~i~---~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~ 581 (1034)
T KOG4150|consen 505 SEKSSKVVEVSHLFAEMVQ---HGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFG 581 (1034)
T ss_pred hhhhhHHHHHHHHHHHHHH---cCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhC
Confidence 1121 22333333 3458999999999998876654432 1 134467899999999999999999
Q ss_pred CCccEEEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEEec
Q psy16633 315 GLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVS 394 (540)
Q Consensus 315 g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~ 394 (540)
|...-+|||+ +++-|||+..++.|++.++|.|...+.|..|||||.+++..++.++.
T Consensus 582 G~L~giIaTN-----------------------ALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~ 638 (1034)
T KOG4150|consen 582 GKLCGIIATN-----------------------ALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAF 638 (1034)
T ss_pred CeeeEEEecc-----------------------hhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEe
Confidence 9999999999 99999999999999999999999999999999999999888776665
Q ss_pred --cccccc
Q psy16633 395 --LREQDL 400 (540)
Q Consensus 395 --~~e~~~ 400 (540)
|-++.+
T Consensus 639 ~~PVDQ~Y 646 (1034)
T KOG4150|consen 639 LGPVDQYY 646 (1034)
T ss_pred ccchhhHh
Confidence 556655
No 123
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.78 E-value=4.4e-17 Score=181.92 Aligned_cols=132 Identities=18% Similarity=0.304 Sum_probs=93.6
Q ss_pred CCCCCChHHHHHHHHHHh----cCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHH-HH
Q psy16633 36 LGWLEPTLIQERAIPLIL----QNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLH-KN 110 (540)
Q Consensus 36 ~g~~~pt~~Q~~ai~~il----~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~-~~ 110 (540)
.|| ++++-|.+....+. .++.+++.|+||+|||++|++|+++.. .+.++||++||++|++|+. +.
T Consensus 242 ~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~---------~~~~vvI~t~T~~Lq~Ql~~~~ 311 (820)
T PRK07246 242 LGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS---------DQRQIIVSVPTKILQDQIMAEE 311 (820)
T ss_pred CCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc---------CCCcEEEEeCcHHHHHHHHHHH
Confidence 467 79999999544433 367899999999999999999988652 4678999999999999994 66
Q ss_pred HHHHHhhcCCCceEEEeecCccccc--------------------------------------------c---h------
Q psy16633 111 IQELTMKCSRDVKCVDISEQVDVSV--------------------------------------------Q---E------ 137 (540)
Q Consensus 111 l~~l~~~~~~~i~~~~~~~~~~~~~--------------------------------------------~---~------ 137 (540)
+..+.... ++.+..+.|+.++-- . +
T Consensus 312 i~~l~~~~--~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~ 389 (820)
T PRK07246 312 VKAIQEVF--HIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHD 389 (820)
T ss_pred HHHHHHhc--CCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhcc
Confidence 77776655 333433333222100 0 0
Q ss_pred ------------------hhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccc
Q psy16633 138 ------------------PLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVF 181 (540)
Q Consensus 138 ------------------~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~ 181 (540)
+.-...++|+|+....|+..+..+.. + ...+++||||||.+.
T Consensus 390 ~~~~~~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~~-~-p~~~~lIiDEAH~l~ 449 (820)
T PRK07246 390 GNLSQSSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDKD-F-ARNKVLVFDEAQKLM 449 (820)
T ss_pred CCCCCCCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhccC-C-CCCCEEEEECcchhH
Confidence 00013489999999988887755432 3 678999999999865
No 124
>KOG0953|consensus
Probab=99.78 E-value=5.4e-18 Score=170.87 Aligned_cols=267 Identities=19% Similarity=0.249 Sum_probs=176.7
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccc
Q psy16633 55 NKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVS 134 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~ 134 (540)
.+-++-.+||.||||.- +|+++. .....++.-|.|-||.++++.+...+ +.|..++|++...
T Consensus 191 RkIi~H~GPTNSGKTy~----ALqrl~--------~aksGvycGPLrLLA~EV~~r~na~g------ipCdL~TGeE~~~ 252 (700)
T KOG0953|consen 191 RKIIMHVGPTNSGKTYR----ALQRLK--------SAKSGVYCGPLRLLAHEVYDRLNALG------IPCDLLTGEERRF 252 (700)
T ss_pred heEEEEeCCCCCchhHH----HHHHHh--------hhccceecchHHHHHHHHHHHhhhcC------CCccccccceeee
Confidence 34578899999999964 457763 35567999999999999999999875 4557778876544
Q ss_pred cchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCCcHHHHHHHHHhCC-cccceeeEeeeccHHH
Q psy16633 135 VQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLP-KLYQAILASATLSEDV 213 (540)
Q Consensus 135 ~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~l~-~~~q~il~SATl~~~~ 213 (540)
.... ...+..+-||-++. +....+++.||||++.|-+..++-.|...+--+. ......+==|.+ +-+
T Consensus 253 ~~~~--~~~a~hvScTVEM~---------sv~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCGepsvl-dlV 320 (700)
T KOG0953|consen 253 VLDN--GNPAQHVSCTVEMV---------SVNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCGEPSVL-DLV 320 (700)
T ss_pred cCCC--CCcccceEEEEEEe---------ecCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccCCchHH-HHH
Confidence 3322 23466777885542 1226788999999999988877766554433222 222211110100 112
Q ss_pred HHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcCcccHH-HHHHHHHHhcccCCcEEEEecChhhHHHHHHHHHhCCCc
Q psy16633 214 LSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKA-TILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKIS 292 (540)
Q Consensus 214 ~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~~~k~-~~l~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~ 292 (540)
+.+.+... +-+.+. .|.- ..+-.-. ..+.. +. +..+|-||| |-|+...+.++..+++.|..
T Consensus 321 ~~i~k~TG-d~vev~-------------~YeR-l~pL~v~~~~~~s-l~-nlk~GDCvV-~FSkk~I~~~k~kIE~~g~~ 382 (700)
T KOG0953|consen 321 RKILKMTG-DDVEVR-------------EYER-LSPLVVEETALGS-LS-NLKPGDCVV-AFSKKDIFTVKKKIEKAGNH 382 (700)
T ss_pred HHHHhhcC-CeeEEE-------------eecc-cCcceehhhhhhh-hc-cCCCCCeEE-EeehhhHHHHHHHHHHhcCc
Confidence 22222111 111111 1110 0100000 11221 22 345677876 66778899999999998876
Q ss_pred -eEEeCCCCCHHHHHHHHHHHhc--CCccEEEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEeCCCC--
Q psy16633 293 -TCVLNSELPAKARCHAVYQFNQ--GLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFP-- 367 (540)
Q Consensus 293 -~~~l~~~l~~~~r~~i~~~F~~--g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p-- 367 (540)
+++++|.+|++.|.+--..||+ ++++|||||| ++++|+|+. ++-||.+++-
T Consensus 383 k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsD-----------------------AIGMGLNL~-IrRiiF~sl~Ky 438 (700)
T KOG0953|consen 383 KCAVIYGSLPPETRLAQAALFNDPSNECDVLVASD-----------------------AIGMGLNLN-IRRIIFYSLIKY 438 (700)
T ss_pred ceEEEecCCCCchhHHHHHHhCCCCCccceEEeec-----------------------ccccccccc-eeEEEEeecccC
Confidence 9999999999999999999998 9999999999 999999995 7778877653
Q ss_pred -------CCcccchhccccccCCCC---CceEEEEe
Q psy16633 368 -------LDIQCYIHRAGRTARGKN---QGTALSFV 393 (540)
Q Consensus 368 -------~s~~~yiqr~GRagR~g~---~g~~i~~~ 393 (540)
.+..+..|.+|||||.|. .|.+-++.
T Consensus 439 sg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~ 474 (700)
T KOG0953|consen 439 SGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLH 474 (700)
T ss_pred CcccceeccHHHHHHHhhcccccccCCcCceEEEee
Confidence 456777899999999874 36555554
No 125
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.76 E-value=7.2e-17 Score=175.15 Aligned_cols=318 Identities=15% Similarity=0.159 Sum_probs=204.7
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHH
Q psy16633 36 LGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELT 115 (540)
Q Consensus 36 ~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~ 115 (540)
+|. .|.++|--.--.+ .+.-++.+.||+|||+++.+|++-..+ .|..|-|++|+.-||.|-++.+..+.
T Consensus 79 lGm-~~ydVQliGg~~L--h~G~iaEM~TGEGKTLvA~l~a~l~al--------~G~~VhvvT~ndyLA~RD~e~m~~l~ 147 (913)
T PRK13103 79 MGM-RHFDVQLIGGMTL--HEGKIAEMRTGEGKTLVGTLAVYLNAL--------SGKGVHVVTVNDYLARRDANWMRPLY 147 (913)
T ss_pred hCC-CcchhHHHhhhHh--ccCccccccCCCCChHHHHHHHHHHHH--------cCCCEEEEeCCHHHHHHHHHHHHHHh
Confidence 465 7888886543333 355799999999999999999886553 57889999999999999999999999
Q ss_pred hhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHH-HHHHhcCc-----CCccCCccEEEEcCccccc-cCC----
Q psy16633 116 MKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARA-LAHLKAKT-----LDLKSSLEIVIIDEADLVF-SFG---- 184 (540)
Q Consensus 116 ~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l-~~~l~~~~-----~~~~~~l~~lViDEah~l~-~~~---- 184 (540)
... ++++..++++......+..+ .++|+++|..-+ .++|+.+- ......+.+.||||+|.++ |..
T Consensus 148 ~~l--Gl~v~~i~~~~~~~err~~Y--~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPL 223 (913)
T PRK13103 148 EFL--GLSVGIVTPFQPPEEKRAAY--AADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPL 223 (913)
T ss_pred ccc--CCEEEEECCCCCHHHHHHHh--cCCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCce
Confidence 887 67888887776555444443 489999999875 33333221 1123788999999999755 100
Q ss_pred -----------cHHHHHHHHHhCCc--------------------cc---------------------------------
Q psy16633 185 -----------YEDDMKAVLKFLPK--------------------LY--------------------------------- 200 (540)
Q Consensus 185 -----------~~~~l~~i~~~l~~--------------------~~--------------------------------- 200 (540)
....+..+...+.+ ..
T Consensus 224 IISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~ 303 (913)
T PRK13103 224 IISGQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHN 303 (913)
T ss_pred eecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhh
Confidence 11111112111100 00
Q ss_pred --------------------------------------------------------------------------------
Q psy16633 201 -------------------------------------------------------------------------------- 200 (540)
Q Consensus 201 -------------------------------------------------------------------------------- 200 (540)
T Consensus 304 ~~~~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~ 383 (913)
T PRK13103 304 LGLLTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRL 383 (913)
T ss_pred hHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHh
Confidence
Q ss_pred --ceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcCcccHHHHH-HHHHHhcccCCcEEEEecChh
Q psy16633 201 --QAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATIL-YTLLKLNLVQGKTIIFVNTVD 277 (540)
Q Consensus 201 --q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~~~k~~~l-~~ll~~~~~~~k~IIF~~s~~ 277 (540)
.+.+||.|.......+...+--+-+.+....+. ...... -.+......|+..+ ..+......+.|+||-+.|+.
T Consensus 384 Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPTnkP~--~R~D~~-d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe 460 (913)
T PRK13103 384 YNKLSGMTGTADTEAFEFRQIYGLDVVVIPPNKPL--ARKDFN-DLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIE 460 (913)
T ss_pred cchhccCCCCCHHHHHHHHHHhCCCEEECCCCCCc--ccccCC-CeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHH
Confidence 122233333222222222221111111100000 000011 12233445565544 444445556779999999999
Q ss_pred hHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcC-CccEEEeCCCCccCCcccccccccccccCccccccccCCCC
Q psy16633 278 KCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQG-LYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQ 356 (540)
Q Consensus 278 ~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g-~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~ 356 (540)
.++.+...|.+.|++.-++|+... .++.-+-. +.| .-.|-|||+ +++||.|+.
T Consensus 461 ~SE~ls~~L~~~gi~h~VLNAk~~--~~EA~IIa-~AG~~GaVTIATN-----------------------MAGRGTDIk 514 (913)
T PRK13103 461 TSEHMSNLLKKEGIEHKVLNAKYH--EKEAEIIA-QAGRPGALTIATN-----------------------MAGRGTDIL 514 (913)
T ss_pred HHHHHHHHHHHcCCcHHHhccccc--hhHHHHHH-cCCCCCcEEEecc-----------------------CCCCCCCEe
Confidence 999999999999999999988644 33332222 344 567999999 999999984
Q ss_pred --------------------------------Cc-----CEEEeCCCCCCcccchhccccccCCCCCceEEEEecccc
Q psy16633 357 --------------------------------FV-----SNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLRE 397 (540)
Q Consensus 357 --------------------------------~v-----~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e 397 (540)
.| =+||-...+.|..-=-|-.||+||-|.+|.+-.|++-+|
T Consensus 515 Lg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED 592 (913)
T PRK13103 515 LGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 592 (913)
T ss_pred cCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 11 267777788887777899999999999999999998654
No 126
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.74 E-value=3.6e-17 Score=142.63 Aligned_cols=128 Identities=33% Similarity=0.503 Sum_probs=112.9
Q ss_pred EEEEEEcCcccHHHHHHHHHHhcc-cCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccE
Q psy16633 241 AHYHILAQEDEKATILYTLLKLNL-VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDV 319 (540)
Q Consensus 241 ~~~~~~~~~~~k~~~l~~ll~~~~-~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~i 319 (540)
.+++...+ ..|...+..++.... ..+++||||++.+.++.++..|.+.+..+..+||+++..+|..++..|++|...+
T Consensus 3 ~~~~~~~~-~~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i 81 (131)
T cd00079 3 KQYVLPVE-DEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVV 81 (131)
T ss_pred EEEEEECC-HHHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcE
Confidence 34444433 367777777776543 4679999999999999999999998999999999999999999999999999999
Q ss_pred EEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEE
Q psy16633 320 IIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSF 392 (540)
Q Consensus 320 LIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~ 392 (540)
|++|+ .+++|+|+|.+++||.++.|++...|.|++||++|.|+.|.++++
T Consensus 82 li~t~-----------------------~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 82 LVATD-----------------------VIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred EEEcC-----------------------hhhcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 99999 899999999999999999999999999999999999998877653
No 127
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.73 E-value=8e-16 Score=165.42 Aligned_cols=317 Identities=16% Similarity=0.169 Sum_probs=205.2
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHH
Q psy16633 36 LGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELT 115 (540)
Q Consensus 36 ~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~ 115 (540)
+|. +|+++|--.--.+..| -++.+.||-|||+++.+|+.-..+ .|..|-|++..--||..=.++...+.
T Consensus 75 lG~-r~ydVQliGglvLh~G--~IAEMkTGEGKTLvAtLpayLnAL--------~GkgVhVVTvNdYLA~RDae~mg~vy 143 (925)
T PRK12903 75 LGK-RPYDVQIIGGIILDLG--SVAEMKTGEGKTITSIAPVYLNAL--------TGKGVIVSTVNEYLAERDAEEMGKVF 143 (925)
T ss_pred hCC-CcCchHHHHHHHHhcC--CeeeecCCCCccHHHHHHHHHHHh--------cCCceEEEecchhhhhhhHHHHHHHH
Confidence 476 8999997776655555 489999999999999998864433 46667778888899988888888888
Q ss_pred hhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHH-HHHHhcCc-----CCccCCccEEEEcCccccc-cCC----
Q psy16633 116 MKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARA-LAHLKAKT-----LDLKSSLEIVIIDEADLVF-SFG---- 184 (540)
Q Consensus 116 ~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l-~~~l~~~~-----~~~~~~l~~lViDEah~l~-~~~---- 184 (540)
..+ +++++.+..+......+.. -.+||+++|..-| .++|+.+- ....+.+.+.||||+|.++ +..
T Consensus 144 ~fL--GLsvG~i~~~~~~~~rr~a--Y~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPL 219 (925)
T PRK12903 144 NFL--GLSVGINKANMDPNLKREA--YACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPL 219 (925)
T ss_pred HHh--CCceeeeCCCCChHHHHHh--ccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCcc
Confidence 887 5666666555443333332 3689999998764 33443321 1122678899999999754 110
Q ss_pred -----------cHHHHHHHHHhCCc--------c----------------------------------------------
Q psy16633 185 -----------YEDDMKAVLKFLPK--------L---------------------------------------------- 199 (540)
Q Consensus 185 -----------~~~~l~~i~~~l~~--------~---------------------------------------------- 199 (540)
....+..+...+.. .
T Consensus 220 IISg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~r 299 (925)
T PRK12903 220 IISGGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKE 299 (925)
T ss_pred cccCCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhc
Confidence 11112222222211 0
Q ss_pred --------------------------------------------------------------cceeeEeeeccHHHHHHH
Q psy16633 200 --------------------------------------------------------------YQAILASATLSEDVLSLK 217 (540)
Q Consensus 200 --------------------------------------------------------------~q~il~SATl~~~~~~~~ 217 (540)
.++.+||.|....-..+.
T Consensus 300 d~dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~ 379 (925)
T PRK12903 300 DVEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFI 379 (925)
T ss_pred CCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHH
Confidence 023344444443333333
Q ss_pred HHhcCCCeEEEecCCCCCCCCCeEE-EEEEcCcccHHHHHHH-HHHhcccCCcEEEEecChhhHHHHHHHHHhCCCceEE
Q psy16633 218 HLILRNPVILKLEEPAIAPVSQLAH-YHILAQEDEKATILYT-LLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCV 295 (540)
Q Consensus 218 ~~~l~~p~~i~~~~~~~~~~~~l~~-~~~~~~~~~k~~~l~~-ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~ 295 (540)
..+-.+-+.+....+ ...... -.+......|+..+.. +.+....+.|+||.|.|+..++.++..|.+.|++..+
T Consensus 380 ~iY~l~Vv~IPTnkP----~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~v 455 (925)
T PRK12903 380 DIYNMRVNVVPTNKP----VIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTV 455 (925)
T ss_pred HHhCCCEEECCCCCC----eeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCcee
Confidence 322222111111100 000000 0233445556655444 4445556779999999999999999999999999999
Q ss_pred eCCCCCHHHHHHHHHHHhcC-CccEEEeCCCCccCCcccccccccccccCccccccccCCCCCcC--------EEEeCCC
Q psy16633 296 LNSELPAKARCHAVYQFNQG-LYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVS--------NVINFDF 366 (540)
Q Consensus 296 l~~~l~~~~r~~i~~~F~~g-~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~--------~Vi~~d~ 366 (540)
+|+.-. +++.-+-. +.| .-.|.|||+ +++||.|+.=-. +||....
T Consensus 456 LNAk~~--e~EA~IIa-~AG~~GaVTIATN-----------------------MAGRGTDI~Lg~~V~~~GGLhVIgTer 509 (925)
T PRK12903 456 LNAKQN--AREAEIIA-KAGQKGAITIATN-----------------------MAGRGTDIKLSKEVLELGGLYVLGTDK 509 (925)
T ss_pred ecccch--hhHHHHHH-hCCCCCeEEEecc-----------------------cccCCcCccCchhHHHcCCcEEEeccc
Confidence 998633 33333322 445 567999999 999999996322 8999999
Q ss_pred CCCcccchhccccccCCCCCceEEEEecccc
Q psy16633 367 PLDIQCYIHRAGRTARGKNQGTALSFVSLRE 397 (540)
Q Consensus 367 p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e 397 (540)
|.|..-=-|-.||+||.|.+|.+-.|++-.|
T Consensus 510 heSrRIDnQLrGRaGRQGDpGss~f~lSLeD 540 (925)
T PRK12903 510 AESRRIDNQLRGRSGRQGDVGESRFFISLDD 540 (925)
T ss_pred CchHHHHHHHhcccccCCCCCcceEEEecch
Confidence 9888777799999999999999999998554
No 128
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.73 E-value=3.3e-15 Score=159.97 Aligned_cols=72 Identities=22% Similarity=0.252 Sum_probs=56.7
Q ss_pred HHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHH-hhcCCCceEEEe
Q psy16633 50 PLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELT-MKCSRDVKCVDI 127 (540)
Q Consensus 50 ~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~-~~~~~~i~~~~~ 127 (540)
..+.+++.+++.|+||+|||++|++|++..+.. ..+.++||++||++|+.|+.+.+..+. ...+..++...+
T Consensus 11 ~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~------~~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~~~l 83 (636)
T TIGR03117 11 TSLRQKRIGMLEASTGVGKTLAMIMAALTMLKE------RPDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQAGFF 83 (636)
T ss_pred HHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHh------ccCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeEEEE
Confidence 344457889999999999999999999987643 246899999999999999999888887 444334444443
No 129
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.71 E-value=2.2e-15 Score=163.02 Aligned_cols=131 Identities=16% Similarity=0.151 Sum_probs=95.5
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHH
Q psy16633 36 LGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELT 115 (540)
Q Consensus 36 ~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~ 115 (540)
+|. +|+++|--.--. -.+.-++.+.||.|||+++.+|+.-..+ .|..|-|++++..||.+-++.+..+.
T Consensus 73 lG~-r~ydvQlig~l~--L~~G~IaEm~TGEGKTL~a~l~ayl~aL--------~G~~VhVvT~NdyLA~RD~e~m~pvy 141 (870)
T CHL00122 73 LGL-RHFDVQLIGGLV--LNDGKIAEMKTGEGKTLVATLPAYLNAL--------TGKGVHIVTVNDYLAKRDQEWMGQIY 141 (870)
T ss_pred hCC-CCCchHhhhhHh--hcCCccccccCCCCchHHHHHHHHHHHh--------cCCceEEEeCCHHHHHHHHHHHHHHH
Confidence 476 688888665433 3466899999999999999999853332 57789999999999999999999999
Q ss_pred hhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHH-----HHHHHhcC-cCCccCCccEEEEcCccccc
Q psy16633 116 MKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPAR-----ALAHLKAK-TLDLKSSLEIVIIDEADLVF 181 (540)
Q Consensus 116 ~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~-----l~~~l~~~-~~~~~~~l~~lViDEah~l~ 181 (540)
..+ +++++.+.++.+....+.. -.++|+++|..- |.+.+... .-...+.+.+.||||+|.++
T Consensus 142 ~~L--GLsvg~i~~~~~~~err~a--Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 142 RFL--GLTVGLIQEGMSSEERKKN--YLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred HHc--CCceeeeCCCCChHHHHHh--cCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 888 5777777666554443333 357999999864 34433211 11122678999999999754
No 130
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.70 E-value=2.6e-15 Score=170.69 Aligned_cols=108 Identities=15% Similarity=0.222 Sum_probs=79.9
Q ss_pred cCCcEEEEecChhhHHHHHHHHHhCCC--ceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccccccccc
Q psy16633 265 VQGKTIIFVNTVDKCYKLKLYLEQFKI--STCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRK 342 (540)
Q Consensus 265 ~~~k~IIF~~s~~~~~~l~~~L~~~~~--~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~ 342 (540)
.+|+++||++|.+....++..|..... ...++.-++....|..+++.|+++.-.||++|.
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~------------------ 812 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTS------------------ 812 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecC------------------
Confidence 568999999999999999999875432 123344455445688999999999889999998
Q ss_pred cCccccccccCCCCCc--CEEEeCCCCC----C--------------------------cccchhccccccCCCCCceEE
Q psy16633 343 RDKESGVSRGIDFQFV--SNVINFDFPL----D--------------------------IQCYIHRAGRTARGKNQGTAL 390 (540)
Q Consensus 343 ~~~~~~~~~GiD~~~v--~~Vi~~d~p~----s--------------------------~~~yiqr~GRagR~g~~g~~i 390 (540)
++.+|||+|+- ++||...+|. + ...+.|-+||.=|..++--++
T Consensus 813 -----sFwEGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v 887 (928)
T PRK08074 813 -----SFWEGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTV 887 (928)
T ss_pred -----cccCccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEE
Confidence 99999999974 6788766552 1 122258899999987654455
Q ss_pred EEecc
Q psy16633 391 SFVSL 395 (540)
Q Consensus 391 ~~~~~ 395 (540)
+++++
T Consensus 888 ~ilD~ 892 (928)
T PRK08074 888 FVLDR 892 (928)
T ss_pred EEecC
Confidence 55543
No 131
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.70 E-value=3.3e-17 Score=129.50 Aligned_cols=78 Identities=33% Similarity=0.517 Sum_probs=75.6
Q ss_pred HHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEe
Q psy16633 284 LYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVIN 363 (540)
Q Consensus 284 ~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~ 363 (540)
++|+..++++..+||++++.+|..+++.|+.|..+|||||+ ++++|+|+|++++||+
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~-----------------------~~~~Gid~~~~~~vi~ 57 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATD-----------------------ILGEGIDLPDASHVIF 57 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESC-----------------------GGTTSSTSTTESEEEE
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeec-----------------------cccccccccccccccc
Confidence 36889999999999999999999999999999999999999 9999999999999999
Q ss_pred CCCCCCcccchhccccccCCC
Q psy16633 364 FDFPLDIQCYIHRAGRTARGK 384 (540)
Q Consensus 364 ~d~p~s~~~yiqr~GRagR~g 384 (540)
+++|+|...|.|++||++|.|
T Consensus 58 ~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 58 YDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp SSSESSHHHHHHHHTTSSTTT
T ss_pred cccCCCHHHHHHHhhcCCCCC
Confidence 999999999999999999986
No 132
>KOG0385|consensus
Probab=99.70 E-value=3.5e-15 Score=155.64 Aligned_cols=312 Identities=17% Similarity=0.209 Sum_probs=209.7
Q ss_pred CCChHHHHHHHHHHhc----CCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHH
Q psy16633 39 LEPTLIQERAIPLILQ----NKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQEL 114 (540)
Q Consensus 39 ~~pt~~Q~~ai~~il~----gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l 114 (540)
..++++|.+-+..+.+ |-+.|..-..|-|||+- .|.++..+...+ .-.+..||++|...| ..|.+.++++
T Consensus 166 g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQ-tIs~l~yl~~~~----~~~GPfLVi~P~StL-~NW~~Ef~rf 239 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQ-TISLLGYLKGRK----GIPGPFLVIAPKSTL-DNWMNEFKRF 239 (971)
T ss_pred CccchhhhccHHHHHHHHhcCcccEeehhcccchHHH-HHHHHHHHHHhc----CCCCCeEEEeeHhhH-HHHHHHHHHh
Confidence 3689999998877654 67899999999999984 566666664422 234567999998777 5577777777
Q ss_pred HhhcCCCceEEEeecCccccc--chh-hhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCCcHHHHHH
Q psy16633 115 TMKCSRDVKCVDISEQVDVSV--QEP-LLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKA 191 (540)
Q Consensus 115 ~~~~~~~i~~~~~~~~~~~~~--~~~-~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~ 191 (540)
+ +++++..+.|+..... .+. ......+|+|+|.+..+.- ...+. .-.++++||||||++-... ..+..
T Consensus 240 ~----P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk-~~~W~ylvIDEaHRiKN~~--s~L~~ 310 (971)
T KOG0385|consen 240 T----PSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD--KSFLK-KFNWRYLVIDEAHRIKNEK--SKLSK 310 (971)
T ss_pred C----CCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh--HHHHh-cCCceEEEechhhhhcchh--hHHHH
Confidence 5 3778888888753221 112 2234789999999987653 11111 1468999999999976543 22334
Q ss_pred HHHhCCcccceeeEeeeccH-HHHH-------------------------------------------------------
Q psy16633 192 VLKFLPKLYQAILASATLSE-DVLS------------------------------------------------------- 215 (540)
Q Consensus 192 i~~~l~~~~q~il~SATl~~-~~~~------------------------------------------------------- 215 (540)
+++.+... .-++++.|+-. ++.+
T Consensus 311 ~lr~f~~~-nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe 389 (971)
T KOG0385|consen 311 ILREFKTD-NRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVE 389 (971)
T ss_pred HHHHhccc-ceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHh
Confidence 44443322 23455555410 0000
Q ss_pred --------------------------------------------------HHHHhcCCCeEEEecCCCCCCCCCeEEEEE
Q psy16633 216 --------------------------------------------------LKHLILRNPVILKLEEPAIAPVSQLAHYHI 245 (540)
Q Consensus 216 --------------------------------------------------~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~ 245 (540)
-.+..|..|.....-++. ++..... .
T Consensus 390 ~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg-~pyttde---h 465 (971)
T KOG0385|consen 390 KSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPG-PPYTTDE---H 465 (971)
T ss_pred hcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCC-CCCCcch---H
Confidence 001112222222111110 0000000 0
Q ss_pred EcCcccHHHHHHHHHHh-cccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCC---ccEEE
Q psy16633 246 LAQEDEKATILYTLLKL-NLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGL---YDVII 321 (540)
Q Consensus 246 ~~~~~~k~~~l~~ll~~-~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~---~~iLI 321 (540)
.+...-|+.+|..++.. ...+.++|||..-.....-|-.++.-.++..|-+.|..+.++|...++.|+... +-.|+
T Consensus 466 Lv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlL 545 (971)
T KOG0385|consen 466 LVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLL 545 (971)
T ss_pred HHhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEE
Confidence 11233466666666543 334569999999999999999998888999999999999999999999998754 55788
Q ss_pred eCCCCccCCcccccccccccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEEe
Q psy16633 322 ASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFV 393 (540)
Q Consensus 322 aT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~ 393 (540)
+|- +-+-|||+...++||.||..+++..=.|..-||.|.|+...+.+|-
T Consensus 546 STR-----------------------AGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~R 594 (971)
T KOG0385|consen 546 STR-----------------------AGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYR 594 (971)
T ss_pred ecc-----------------------ccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEE
Confidence 898 8899999999999999999999999999999999999876655553
No 133
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.67 E-value=1.3e-15 Score=133.79 Aligned_cols=144 Identities=37% Similarity=0.497 Sum_probs=107.0
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCccccc
Q psy16633 56 KDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSV 135 (540)
Q Consensus 56 kd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~ 135 (540)
+++++.++||+|||.+++..+...... ....+++|++|++.++.|+.+.+...... .+.+..+.+......
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~------~~~~~~lv~~p~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 71 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS------LKGGQVLVLAPTRELANQVAERLKELFGE---GIKVGYLIGGTSIKQ 71 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc------ccCCCEEEEcCcHHHHHHHHHHHHHHhhC---CcEEEEEecCcchhH
Confidence 468999999999999888777766533 24679999999999999999988887643 355555555544443
Q ss_pred chhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEeeec
Q psy16633 136 QEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209 (540)
Q Consensus 136 ~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~SATl 209 (540)
.........+|+++|++.+...+....... ..++++|+||+|.+....................+++++|||+
T Consensus 72 ~~~~~~~~~~i~i~t~~~~~~~~~~~~~~~-~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 72 QEKLLSGKTDIVVGTPGRLLDELERLKLSL-KKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HHHHhcCCCCEEEECcHHHHHHHHcCCcch-hcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 333345688999999999988777654333 6789999999998877654443223344456678999999996
No 134
>KOG0925|consensus
Probab=99.67 E-value=1.1e-14 Score=144.95 Aligned_cols=316 Identities=16% Similarity=0.190 Sum_probs=194.3
Q ss_pred CCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHH--HHHHHhhcccccCCCeEEEEEcCc
Q psy16633 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPM--IQKIINLKQTAQVQETKALVLSPS 100 (540)
Q Consensus 23 ~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipi--l~~l~~~~~~~~~~~~~vlil~Pt 100 (540)
.+.+++-.+-+++.-=---...+.+-+..+.+++-+++.+.||||||. .+|- +...+ .....+...-|.
T Consensus 30 ~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKtt--QiPq~~~~~~~-------~~~~~v~CTQpr 100 (699)
T KOG0925|consen 30 KPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTT--QIPQFVLEYEL-------SHLTGVACTQPR 100 (699)
T ss_pred CcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccc--cCcHHHHHHHH-------hhccceeecCch
Confidence 344777777776653322334455566777778889999999999996 4442 22221 233667888899
Q ss_pred HHHHHHHHHHHHH-----HHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEc
Q psy16633 101 KELCNQLHKNIQE-----LTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIID 175 (540)
Q Consensus 101 ~~La~q~~~~l~~-----l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViD 175 (540)
|--|.+++..... ++...|..|+....++.. .-+-+||.+.|+.-.-+... +...++||+|
T Consensus 101 rvaamsva~RVadEMDv~lG~EVGysIrfEdC~~~~------------T~Lky~tDgmLlrEams~p~--l~~y~viiLD 166 (699)
T KOG0925|consen 101 RVAAMSVAQRVADEMDVTLGEEVGYSIRFEDCTSPN------------TLLKYCTDGMLLREAMSDPL--LGRYGVIILD 166 (699)
T ss_pred HHHHHHHHHHHHHHhccccchhccccccccccCChh------------HHHHHhcchHHHHHHhhCcc--cccccEEEec
Confidence 9888888776554 344444444444333321 11336777777665544433 2889999999
Q ss_pred Cccccc-cC-CcHHHHHHHHHhCCcccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcCcccHH
Q psy16633 176 EADLVF-SF-GYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKA 253 (540)
Q Consensus 176 Eah~l~-~~-~~~~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~~~k~ 253 (540)
|||.-. .. -.-..++.++..-| ..++|.||||+.. ..+.. +..++-.+.+... ..+..+|....+.+.+
T Consensus 167 eahERtlATDiLmGllk~v~~~rp-dLk~vvmSatl~a--~Kfq~-yf~n~Pll~vpg~-----~PvEi~Yt~e~erDyl 237 (699)
T KOG0925|consen 167 EAHERTLATDILMGLLKEVVRNRP-DLKLVVMSATLDA--EKFQR-YFGNAPLLAVPGT-----HPVEIFYTPEPERDYL 237 (699)
T ss_pred hhhhhhHHHHHHHHHHHHHHhhCC-CceEEEeecccch--HHHHH-HhCCCCeeecCCC-----CceEEEecCCCChhHH
Confidence 999311 00 01122333333344 7799999999864 23334 4445544544431 1233455555555554
Q ss_pred HH-HHHHHHh--cccCCcEEEEecChhhHHHHHHHHH----hCC-----CceEEeCCCCCHHHHHHHHHHHh---cC--C
Q psy16633 254 TI-LYTLLKL--NLVQGKTIIFVNTVDKCYKLKLYLE----QFK-----ISTCVLNSELPAKARCHAVYQFN---QG--L 316 (540)
Q Consensus 254 ~~-l~~ll~~--~~~~~k~IIF~~s~~~~~~l~~~L~----~~~-----~~~~~l~~~l~~~~r~~i~~~F~---~g--~ 316 (540)
+. +..+++. ....|-++||....++.+..++.+. ..+ +++..+| +++++.+++--. +| .
T Consensus 238 EaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~ 313 (699)
T KOG0925|consen 238 EAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYG 313 (699)
T ss_pred HHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCcc
Confidence 43 3333332 3357899999999877555555443 332 4566677 333344433221 12 2
Q ss_pred ccEEEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEeCCC------------------CCCcccchhccc
Q psy16633 317 YDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDF------------------PLDIQCYIHRAG 378 (540)
Q Consensus 317 ~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~------------------p~s~~~yiqr~G 378 (540)
-+|+|+|+ ..+..+.+++|.+||+-++ |-|..+-.||.|
T Consensus 314 RkvVvstn-----------------------iaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~g 370 (699)
T KOG0925|consen 314 RKVVVSTN-----------------------IAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAG 370 (699)
T ss_pred ceEEEEec-----------------------chheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhh
Confidence 46999999 7888999999999997553 557788889999
Q ss_pred cccCCCCCceEEEEeccccc
Q psy16633 379 RTARGKNQGTALSFVSLREQ 398 (540)
Q Consensus 379 RagR~g~~g~~i~~~~~~e~ 398 (540)
|+||. .+|.|+.+++..-.
T Consensus 371 ragrt-~pGkcfrLYte~~~ 389 (699)
T KOG0925|consen 371 RAGRT-RPGKCFRLYTEEAF 389 (699)
T ss_pred hccCC-CCCceEEeecHHhh
Confidence 99986 68999999986543
No 135
>COG4889 Predicted helicase [General function prediction only]
Probab=99.67 E-value=5.1e-17 Score=170.61 Aligned_cols=320 Identities=17% Similarity=0.141 Sum_probs=181.5
Q ss_pred CCCCChHHHHHHHHHHhcCC----cEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHH
Q psy16633 37 GWLEPTLIQERAIPLILQNK----DVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQ 112 (540)
Q Consensus 37 g~~~pt~~Q~~ai~~il~gk----d~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~ 112 (540)
.-.+|+|+|+.||..+.+|= .-=+.+..|+|||++.+ -+.+.+ ...++|++||+.+|..|..+.+.
T Consensus 158 ~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsL-kisEal---------a~~~iL~LvPSIsLLsQTlrew~ 227 (1518)
T COG4889 158 KPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSL-KISEAL---------AAARILFLVPSISLLSQTLREWT 227 (1518)
T ss_pred CCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHH-HHHHHH---------hhhheEeecchHHHHHHHHHHHh
Confidence 34689999999999998751 12233556999998754 344444 34789999999999998766555
Q ss_pred HHHhhcCCCceEEEeecCcccccchhh-------------------------hhCCCCEEEEChHHHHHHHhcCcCCccC
Q psy16633 113 ELTMKCSRDVKCVDISEQVDVSVQEPL-------------------------LVERPDIVVATPARALAHLKAKTLDLKS 167 (540)
Q Consensus 113 ~l~~~~~~~i~~~~~~~~~~~~~~~~~-------------------------l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~ 167 (540)
.- ...+++...++++.....-... -..+--||++|.+.+...-......+ .
T Consensus 228 ~~---~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~-~ 303 (1518)
T COG4889 228 AQ---KELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGL-D 303 (1518)
T ss_pred hc---cCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcCC-C
Confidence 42 2234555555444332221100 11234589999999877665554455 7
Q ss_pred CccEEEEcCccccccCCcHHHHHHHHHhCC-----cccceeeEeeeccHHHHHHHHH--------------hcCCCeEEE
Q psy16633 168 SLEIVIIDEADLVFSFGYEDDMKAVLKFLP-----KLYQAILASATLSEDVLSLKHL--------------ILRNPVILK 228 (540)
Q Consensus 168 ~l~~lViDEah~l~~~~~~~~l~~i~~~l~-----~~~q~il~SATl~~~~~~~~~~--------------~l~~p~~i~ 228 (540)
.+++||+||||+...-.+..+=..-+..+. +..+.+.|+||+.---++.+.. ....|.+.+
T Consensus 304 ~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fGeef~r 383 (1518)
T COG4889 304 EFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFGEEFHR 383 (1518)
T ss_pred CccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhchhhhc
Confidence 899999999998654321111111111111 1235677888863211111100 000111111
Q ss_pred ecCCCCCCCCCeEEEEEEcC-------------------cccHHHHH-------HHHHHhcc-------------cCCcE
Q psy16633 229 LEEPAIAPVSQLAHYHILAQ-------------------EDEKATIL-------YTLLKLNL-------------VQGKT 269 (540)
Q Consensus 229 ~~~~~~~~~~~l~~~~~~~~-------------------~~~k~~~l-------~~ll~~~~-------------~~~k~ 269 (540)
+.-.+.....-+..|-+.+- ..-...-. ..+.+... +..+.
T Consensus 384 l~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ap~~RA 463 (1518)
T COG4889 384 LGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTAPMQRA 463 (1518)
T ss_pred ccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCchHHHHH
Confidence 11000000011111111111 01111111 11122111 11267
Q ss_pred EEEecChhhHHHHHHHHHh-------------CCCce--EEeCCCCCHHHHHHHHHH---HhcCCccEEEeCCCCccCCc
Q psy16633 270 IIFVNTVDKCYKLKLYLEQ-------------FKIST--CVLNSELPAKARCHAVYQ---FNQGLYDVIIASDEKALETP 331 (540)
Q Consensus 270 IIF~~s~~~~~~l~~~L~~-------------~~~~~--~~l~~~l~~~~r~~i~~~---F~~g~~~iLIaT~~~~~~~~ 331 (540)
|-||.++.+...++..++. .++.+ -...|.|...+|...... |...+++||--..
T Consensus 464 IaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaR------- 536 (1518)
T COG4889 464 IAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNAR------- 536 (1518)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccch-------
Confidence 8899988877766655532 13444 445688998888554432 3456778876665
Q ss_pred ccccccccccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCC---CCceEEEEe
Q psy16633 332 QINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK---NQGTALSFV 393 (540)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g---~~g~~i~~~ 393 (540)
.+++|+|+|.++.||.||+-.|..+.+|.+||+.|-. +-|..|+=+
T Consensus 537 ----------------cLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPI 585 (1518)
T COG4889 537 ----------------CLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPI 585 (1518)
T ss_pred ----------------hhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEe
Confidence 8999999999999999999999999999999999953 235555443
No 136
>KOG0387|consensus
Probab=99.65 E-value=1.8e-14 Score=151.08 Aligned_cols=312 Identities=16% Similarity=0.131 Sum_probs=200.8
Q ss_pred CCChHHHHHHHHHHhc----CCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHH
Q psy16633 39 LEPTLIQERAIPLILQ----NKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQEL 114 (540)
Q Consensus 39 ~~pt~~Q~~ai~~il~----gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l 114 (540)
..+.++|+..+..+.+ +..-|+--..|-|||.- ++..|..+.... .--..+||+||. .+..||...+..+
T Consensus 204 ~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQ-iisFLaaL~~S~----k~~~paLIVCP~-Tii~qW~~E~~~w 277 (923)
T KOG0387|consen 204 SKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQ-IISFLAALHHSG----KLTKPALIVCPA-TIIHQWMKEFQTW 277 (923)
T ss_pred HHhhHHHHHHHHHHHHHHhccCCCeecccccCccchh-HHHHHHHHhhcc----cccCceEEEccH-HHHHHHHHHHHHh
Confidence 4568999999887754 56688889999999974 444445554421 123779999995 6778999999988
Q ss_pred HhhcCCCceEEEeecCccccc-------------chhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccc
Q psy16633 115 TMKCSRDVKCVDISEQVDVSV-------------QEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVF 181 (540)
Q Consensus 115 ~~~~~~~i~~~~~~~~~~~~~-------------~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~ 181 (540)
+... ++..+.+...... ..........|+++|.+.+.- ....+.- -.++++|+||.|++-
T Consensus 278 ~p~~----rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~--~~d~l~~-~~W~y~ILDEGH~Ir 350 (923)
T KOG0387|consen 278 WPPF----RVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRI--QGDDLLG-ILWDYVILDEGHRIR 350 (923)
T ss_pred Ccce----EEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcc--cCccccc-ccccEEEecCccccc
Confidence 7543 4444443332100 011122356799999877532 1222222 578999999999977
Q ss_pred cCCcHHHHHHHHHhCCcccceeeEeeeccH-HHHH---------------------------------------------
Q psy16633 182 SFGYEDDMKAVLKFLPKLYQAILASATLSE-DVLS--------------------------------------------- 215 (540)
Q Consensus 182 ~~~~~~~l~~i~~~l~~~~q~il~SATl~~-~~~~--------------------------------------------- 215 (540)
...-. +...+..++ ..+-|.+|.|+-. .+.+
T Consensus 351 Npns~--islackki~-T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~ayk 427 (923)
T KOG0387|consen 351 NPNSK--ISLACKKIR-TVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYK 427 (923)
T ss_pred CCccH--HHHHHHhcc-ccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHH
Confidence 65422 222222232 2344555555411 0000
Q ss_pred ----------------------------------------------------------------------HHHHhcCCCe
Q psy16633 216 ----------------------------------------------------------------------LKHLILRNPV 225 (540)
Q Consensus 216 ----------------------------------------------------------------------~~~~~l~~p~ 225 (540)
+....|..|.
T Consensus 428 ca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPd 507 (923)
T KOG0387|consen 428 CAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPD 507 (923)
T ss_pred HHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcc
Confidence 0111122222
Q ss_pred EEEecCCCCCCCCCeEEEEEEcCcccHHHHHHHHHHhcc-cCCcEEEEecChhhHHHHHHHHH-hCCCceEEeCCCCCHH
Q psy16633 226 ILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNL-VQGKTIIFVNTVDKCYKLKLYLE-QFKISTCVLNSELPAK 303 (540)
Q Consensus 226 ~i~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~ll~~~~-~~~k~IIF~~s~~~~~~l~~~L~-~~~~~~~~l~~~l~~~ 303 (540)
.+.-..+.. ..-..+.-.....-|...+..+++... .+.++|+|..++.....|..+|. ..|+..+-+.|..+..
T Consensus 508 ll~~~~~~~---~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~ 584 (923)
T KOG0387|consen 508 LLDRRDEDE---KQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAA 584 (923)
T ss_pred cccCccccc---ccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccc
Confidence 111110000 000000011122346666776666533 34599999999999999999998 5899999999999999
Q ss_pred HHHHHHHHHhcCCc-c-EEEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEeCCCCCCcccchhcccccc
Q psy16633 304 ARCHAVYQFNQGLY-D-VIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTA 381 (540)
Q Consensus 304 ~r~~i~~~F~~g~~-~-iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRag 381 (540)
.|..++.+|+++.. . .|++|. +-+-|+|+..++-||.||+.+++.+=.|..-||-
T Consensus 585 ~R~~lVd~Fne~~s~~VFLLTTr-----------------------vGGLGlNLTgAnRVIIfDPdWNPStD~QAreRaw 641 (923)
T KOG0387|consen 585 LRQKLVDRFNEDESIFVFLLTTR-----------------------VGGLGLNLTGANRVIIFDPDWNPSTDNQARERAW 641 (923)
T ss_pred hhhHHHHhhcCCCceEEEEEEec-----------------------ccccccccccCceEEEECCCCCCccchHHHHHHH
Confidence 99999999997754 3 566676 7789999999999999999999999999999999
Q ss_pred CCCCCceEEEE
Q psy16633 382 RGKNQGTALSF 392 (540)
Q Consensus 382 R~g~~g~~i~~ 392 (540)
|.|++-.++++
T Consensus 642 RiGQkkdV~VY 652 (923)
T KOG0387|consen 642 RIGQKKDVVVY 652 (923)
T ss_pred hhcCccceEEE
Confidence 99987544433
No 137
>KOG1123|consensus
Probab=99.64 E-value=1.1e-15 Score=152.27 Aligned_cols=295 Identities=17% Similarity=0.163 Sum_probs=188.3
Q ss_pred CCChHHHHHHHHHHhcC---CcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHH
Q psy16633 39 LEPTLIQERAIPLILQN---KDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELT 115 (540)
Q Consensus 39 ~~pt~~Q~~ai~~il~g---kd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~ 115 (540)
..++|+|++++.....+ ++-+|..|.|+|||++=+-++. .-..++|+++.+.--+.||..+++.+.
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~-----------tikK~clvLcts~VSVeQWkqQfk~ws 369 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAAC-----------TIKKSCLVLCTSAVSVEQWKQQFKQWS 369 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeee-----------eecccEEEEecCccCHHHHHHHHHhhc
Confidence 35789999999988753 5789999999999986433221 236789999999999999999999886
Q ss_pred hhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhc-----CcCC--ccCCccEEEEcCccccccCCcHHH
Q psy16633 116 MKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKA-----KTLD--LKSSLEIVIIDEADLVFSFGYEDD 188 (540)
Q Consensus 116 ~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~-----~~~~--~~~~l~~lViDEah~l~~~~~~~~ 188 (540)
... +-.++..+++.. .....++.|+|+|..++..--++ ..+. -...++++|+||+|.+...-|+..
T Consensus 370 ti~--d~~i~rFTsd~K-----e~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRV 442 (776)
T KOG1123|consen 370 TIQ--DDQICRFTSDAK-----ERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRV 442 (776)
T ss_pred ccC--ccceEEeecccc-----ccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHH
Confidence 543 334445554432 12235788999998765321111 0001 116789999999998776555554
Q ss_pred HHHHHHhCCcccceeeEeeeccHHHHHHHHH-hcCCCeEE--------------EecCCCCC------------CCCCeE
Q psy16633 189 MKAVLKFLPKLYQAILASATLSEDVLSLKHL-ILRNPVIL--------------KLEEPAIA------------PVSQLA 241 (540)
Q Consensus 189 l~~i~~~l~~~~q~il~SATl~~~~~~~~~~-~l~~p~~i--------------~~~~~~~~------------~~~~l~ 241 (540)
+.-+..+. -++++||+-.+-+.+..+ ++-.|... ++.-.+.- ....-+
T Consensus 443 lsiv~aHc-----KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~k 517 (776)
T KOG1123|consen 443 LSIVQAHC-----KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRK 517 (776)
T ss_pred HHHHHHHh-----hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhh
Confidence 44443332 367999984332221111 12222111 11100000 000011
Q ss_pred EEEEEcCcccHHHHHHHHHHhccc-CCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhc-CCccE
Q psy16633 242 HYHILAQEDEKATILYTLLKLNLV-QGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQ-GLYDV 319 (540)
Q Consensus 242 ~~~~~~~~~~k~~~l~~ll~~~~~-~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~-g~~~i 319 (540)
...+.+-...|+.....+++.+.. +.|+|||..++-.....+..|.+ -.++|..++.+|..|++.|+- ..++-
T Consensus 518 r~lLyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~K-----pfIYG~Tsq~ERm~ILqnFq~n~~vNT 592 (776)
T KOG1123|consen 518 RMLLYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGK-----PFIYGPTSQNERMKILQNFQTNPKVNT 592 (776)
T ss_pred hheeeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcCC-----ceEECCCchhHHHHHHHhcccCCccce
Confidence 112223344567666666665443 45899999887665555555432 468899999999999999975 45677
Q ss_pred EEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEeCCCC-CCcccchhccccccCCC
Q psy16633 320 IIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFP-LDIQCYIHRAGRTARGK 384 (540)
Q Consensus 320 LIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p-~s~~~yiqr~GRagR~g 384 (540)
++-+- +....+|+|..+++|....- .|-.+-.||.||.-|+.
T Consensus 593 IFlSK-----------------------VgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAK 635 (776)
T KOG1123|consen 593 IFLSK-----------------------VGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 635 (776)
T ss_pred EEEee-----------------------ccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHh
Confidence 77666 56689999999999986543 46777889999988864
No 138
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.63 E-value=7.2e-14 Score=151.09 Aligned_cols=131 Identities=15% Similarity=0.151 Sum_probs=97.2
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHH
Q psy16633 36 LGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELT 115 (540)
Q Consensus 36 ~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~ 115 (540)
+|. +|.++|--.--.+ .+.-++.+.||-|||+++.+|+.-..+ .|..|-|++++.-||..=++.+..+.
T Consensus 82 lG~-r~ydVQliGgl~L--h~G~IAEM~TGEGKTL~atlpaylnAL--------~GkgVhVVTvNdYLA~RDae~m~~vy 150 (939)
T PRK12902 82 LGM-RHFDVQLIGGMVL--HEGQIAEMKTGEGKTLVATLPSYLNAL--------TGKGVHVVTVNDYLARRDAEWMGQVH 150 (939)
T ss_pred hCC-CcchhHHHhhhhh--cCCceeeecCCCChhHHHHHHHHHHhh--------cCCCeEEEeCCHHHHHhHHHHHHHHH
Confidence 466 7888886554444 455799999999999999999876543 46778999999999999999999998
Q ss_pred hhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHH-----HHHHhc-CcCCccCCccEEEEcCccccc
Q psy16633 116 MKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARA-----LAHLKA-KTLDLKSSLEIVIIDEADLVF 181 (540)
Q Consensus 116 ~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l-----~~~l~~-~~~~~~~~l~~lViDEah~l~ 181 (540)
..+ +++++.+.++......+ ..-.+||+++|+..| .+.+.. ......+.+.+.||||+|.++
T Consensus 151 ~~L--GLtvg~i~~~~~~~err--~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 151 RFL--GLSVGLIQQDMSPEERK--KNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred HHh--CCeEEEECCCCChHHHH--HhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 888 67777666654433322 335799999999876 555543 221233788999999999755
No 139
>KOG0390|consensus
Probab=99.61 E-value=1.2e-13 Score=148.48 Aligned_cols=319 Identities=17% Similarity=0.147 Sum_probs=192.8
Q ss_pred CChHHHHHHHHHHhc---CC-------cEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHH
Q psy16633 40 EPTLIQERAIPLILQ---NK-------DVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHK 109 (540)
Q Consensus 40 ~pt~~Q~~ai~~il~---gk-------d~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~ 109 (540)
.++|+|++.+..+.+ |. .+|+.-..|+|||+. .|+.+..+++.......--.+.||++| ..|...|++
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq-~IsflwtlLrq~P~~~~~~~k~lVV~P-~sLv~nWkk 315 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQ-CISFIWTLLRQFPQAKPLINKPLVVAP-SSLVNNWKK 315 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHH-HHHHHHHHHHhCcCccccccccEEEcc-HHHHHHHHH
Confidence 578999999987754 32 377777889999984 667777776642111112278999999 578899999
Q ss_pred HHHHHHhhcCCCceEEEeecCccccc--chhhhh-----CCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCcccccc
Q psy16633 110 NIQELTMKCSRDVKCVDISEQVDVSV--QEPLLV-----ERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFS 182 (540)
Q Consensus 110 ~l~~l~~~~~~~i~~~~~~~~~~~~~--~~~~l~-----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~ 182 (540)
.+.++... ..+....+++..+... ....+. -...|++.+.+.+.+.+..-. . ..++++|+||.|.+-.
T Consensus 316 EF~KWl~~--~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~il--~-~~~glLVcDEGHrlkN 390 (776)
T KOG0390|consen 316 EFGKWLGN--HRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRKIL--L-IRPGLLVCDEGHRLKN 390 (776)
T ss_pred HHHHhccc--cccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHHHh--c-CCCCeEEECCCCCccc
Confidence 88887653 2567777776655300 011110 123577788888876655422 2 6789999999997644
Q ss_pred CCcHHHHHHHHHhCCcccceeeEeeecc-HHH------------------------------------------------
Q psy16633 183 FGYEDDMKAVLKFLPKLYQAILASATLS-EDV------------------------------------------------ 213 (540)
Q Consensus 183 ~~~~~~l~~i~~~l~~~~q~il~SATl~-~~~------------------------------------------------ 213 (540)
.. ..+...+..+. ..+-|++|.|+- +++
T Consensus 391 ~~--s~~~kaL~~l~-t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl 467 (776)
T KOG0390|consen 391 SD--SLTLKALSSLK-TPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERL 467 (776)
T ss_pred hh--hHHHHHHHhcC-CCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHH
Confidence 21 12222222222 234455666641 000
Q ss_pred ---HHH-----------------------------------------------------------HHHhcCCCeEEEecC
Q psy16633 214 ---LSL-----------------------------------------------------------KHLILRNPVILKLEE 231 (540)
Q Consensus 214 ---~~~-----------------------------------------------------------~~~~l~~p~~i~~~~ 231 (540)
..+ .+..+..|..+....
T Consensus 468 ~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~ 547 (776)
T KOG0390|consen 468 QELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCE 547 (776)
T ss_pred HHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhcccc
Confidence 000 111112222111100
Q ss_pred CC-----CCCC------CCeEEEEEEcCcccHHHHHHHHHHhcccCCcEEEE----ecChhhHHHHHHHHHhCCCceEEe
Q psy16633 232 PA-----IAPV------SQLAHYHILAQEDEKATILYTLLKLNLVQGKTIIF----VNTVDKCYKLKLYLEQFKISTCVL 296 (540)
Q Consensus 232 ~~-----~~~~------~~l~~~~~~~~~~~k~~~l~~ll~~~~~~~k~IIF----~~s~~~~~~l~~~L~~~~~~~~~l 296 (540)
.. ...+ ..............++..|..++.. .+.++++| .|.+...+.+...++-.|+.++.+
T Consensus 548 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~--~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rL 625 (776)
T KOG0390|consen 548 KTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEV--IREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRL 625 (776)
T ss_pred cccccccccChHhhhcccccccccccchhhhHHHHHHHHHHH--HhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEE
Confidence 00 0000 0000001111112344455555421 22333333 344555555555556669999999
Q ss_pred CCCCCHHHHHHHHHHHhcCCc--cEEEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEeCCCCCCcccch
Q psy16633 297 NSELPAKARCHAVYQFNQGLY--DVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYI 374 (540)
Q Consensus 297 ~~~l~~~~r~~i~~~F~~g~~--~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yi 374 (540)
+|.++..+|..+++.||+..- .|+.++.. +.+.||++-+.+.||.||.+++++.=.
T Consensus 626 dG~~~~~qRq~~vd~FN~p~~~~~vfLlSsK----------------------Agg~GinLiGAsRlil~D~dWNPa~d~ 683 (776)
T KOG0390|consen 626 DGKTSIKQRQKLVDTFNDPESPSFVFLLSSK----------------------AGGEGLNLIGASRLILFDPDWNPAVDQ 683 (776)
T ss_pred cCCCchHHHHHHHHhccCCCCCceEEEEecc----------------------cccCceeecccceEEEeCCCCCchhHH
Confidence 999999999999999997543 45555542 889999999999999999999999999
Q ss_pred hccccccCCCCCceEEEE
Q psy16633 375 HRAGRTARGKNQGTALSF 392 (540)
Q Consensus 375 qr~GRagR~g~~g~~i~~ 392 (540)
|.++|+-|.|++-.|+.+
T Consensus 684 QAmaR~~RdGQKk~v~iY 701 (776)
T KOG0390|consen 684 QAMARAWRDGQKKPVYIY 701 (776)
T ss_pred HHHHHhccCCCcceEEEE
Confidence 999999999987665543
No 140
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.61 E-value=4.3e-15 Score=137.45 Aligned_cols=152 Identities=25% Similarity=0.251 Sum_probs=101.3
Q ss_pred CChHHHHHHHHHHhc-------CCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHH
Q psy16633 40 EPTLIQERAIPLILQ-------NKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQ 112 (540)
Q Consensus 40 ~pt~~Q~~ai~~il~-------gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~ 112 (540)
+|+++|.+|+..+.+ ++.+++.+|||||||.+++..+.+.. . ++++++|+..|+.|+.+.+.
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~---------~--~~l~~~p~~~l~~Q~~~~~~ 71 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA---------R--KVLIVAPNISLLEQWYDEFD 71 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH---------C--EEEEEESSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc---------c--ceeEecCHHHHHHHHHHHHH
Confidence 589999999999984 58899999999999998775554443 1 89999999999999999997
Q ss_pred HHHhhcCCCceEEEe------------ecCcccccchhhhhCCCCEEEEChHHHHHHHhcCc----------CCccCCcc
Q psy16633 113 ELTMKCSRDVKCVDI------------SEQVDVSVQEPLLVERPDIVVATPARALAHLKAKT----------LDLKSSLE 170 (540)
Q Consensus 113 ~l~~~~~~~i~~~~~------------~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~----------~~~~~~l~ 170 (540)
.+.... ...... .................+++++|...+........ .......+
T Consensus 72 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (184)
T PF04851_consen 72 DFGSEK---YNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFD 148 (184)
T ss_dssp HHSTTS---EEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSES
T ss_pred Hhhhhh---hhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCC
Confidence 665432 111100 00111111112223567899999999988765421 11225678
Q ss_pred EEEEcCccccccCCcHHHHHHHHHhCCcccceeeEeeecc
Q psy16633 171 IVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLS 210 (540)
Q Consensus 171 ~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~SATl~ 210 (540)
+||+||||++.+.. .+..+.. .....+++||||+.
T Consensus 149 ~vI~DEaH~~~~~~---~~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 149 LVIIDEAHHYPSDS---SYREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp EEEEETGGCTHHHH---HHHHHHH--SSCCEEEEEESS-S
T ss_pred EEEEehhhhcCCHH---HHHHHHc--CCCCeEEEEEeCcc
Confidence 99999999765432 1445555 34557899999985
No 141
>KOG0951|consensus
Probab=99.60 E-value=2.2e-14 Score=156.29 Aligned_cols=309 Identities=15% Similarity=0.226 Sum_probs=209.1
Q ss_pred ChHHHHHHHHHHhcC-CcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcC
Q psy16633 41 PTLIQERAIPLILQN-KDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCS 119 (540)
Q Consensus 41 pt~~Q~~ai~~il~g-kd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~ 119 (540)
..++|.++++.+.+. .++++.||+|||||+++.++++. .....+++++.|.-+.+..+++.+..-+...
T Consensus 1144 ~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~---------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~- 1213 (1674)
T KOG0951|consen 1144 FNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR---------PDTIGRAVYIAPLEEIADEQYRDWEKKFSKL- 1213 (1674)
T ss_pred cCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC---------CccceEEEEecchHHHHHHHHHHHHHhhccc-
Confidence 378999999988775 56999999999999999888775 2467899999999999998888887766555
Q ss_pred CCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCCcH------HHHHHHH
Q psy16633 120 RDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYE------DDMKAVL 193 (540)
Q Consensus 120 ~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~~------~~l~~i~ 193 (540)
.+..+..++|+..... .+....+|+|+||+++-.. + .. ..+++.|.||.|++.+. ++ -.++.|.
T Consensus 1214 ~G~~~~~l~ge~s~~l---kl~~~~~vii~tpe~~d~l-q----~i-Q~v~l~i~d~lh~igg~-~g~v~evi~S~r~ia 1283 (1674)
T KOG0951|consen 1214 LGLRIVKLTGETSLDL---KLLQKGQVIISTPEQWDLL-Q----SI-QQVDLFIVDELHLIGGV-YGAVYEVICSMRYIA 1283 (1674)
T ss_pred cCceEEecCCccccch---HHhhhcceEEechhHHHHH-h----hh-hhcceEeeehhhhhccc-CCceEEEEeeHHHHH
Confidence 5778888888765443 3446789999999996544 3 22 67899999999977632 22 1266666
Q ss_pred HhCCcccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcCccc--HHH----HHHHHHHhcccCC
Q psy16633 194 KFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDE--KAT----ILYTLLKLNLVQG 267 (540)
Q Consensus 194 ~~l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~~~--k~~----~l~~ll~~~~~~~ 267 (540)
..+-++.+++.+|..+.+.-.- ..+....+..+..+..+.+..++-..+.....+ .+. .+.++.+....++
T Consensus 1284 ~q~~k~ir~v~ls~~lana~d~---ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k 1360 (1674)
T KOG0951|consen 1284 SQLEKKIRVVALSSSLANARDL---IGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRK 1360 (1674)
T ss_pred HHHHhheeEEEeehhhccchhh---ccccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCC
Confidence 7777788899999877653322 223333444444443333333322222222111 111 2233344445677
Q ss_pred cEEEEecChhhHHHHHHHHHhC----------------------CCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCC
Q psy16633 268 KTIIFVNTVDKCYKLKLYLEQF----------------------KISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE 325 (540)
Q Consensus 268 k~IIF~~s~~~~~~l~~~L~~~----------------------~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~ 325 (540)
+.+||+++++.|..++.-|-.+ ..+..+=|-+++.++..-+-+.|..|.+.|+|...
T Consensus 1361 ~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~- 1439 (1674)
T KOG0951|consen 1361 PAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSR- 1439 (1674)
T ss_pred CeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEc-
Confidence 9999999999887775443221 12233338899999999999999999999999986
Q ss_pred CccCCcccccccccccccCccccccccCCCCCcCEEEe-----CCC------CCCcccchhccccccCCCCCceEEEEec
Q psy16633 326 KALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVIN-----FDF------PLDIQCYIHRAGRTARGKNQGTALSFVS 394 (540)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~-----~d~------p~s~~~yiqr~GRagR~g~~g~~i~~~~ 394 (540)
. -.|+-... ..|+- ||. +.+.....|++|+|.| .|.|+.++.
T Consensus 1440 ----------------------~-~~~~~~~~-~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~ 1492 (1674)
T KOG0951|consen 1440 ----------------------D-CYGTKLKA-HLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCH 1492 (1674)
T ss_pred ----------------------c-cccccccc-eEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEec
Confidence 2 23443322 22222 332 4457788999999988 588999988
Q ss_pred cccccc
Q psy16633 395 LREQDL 400 (540)
Q Consensus 395 ~~e~~~ 400 (540)
....++
T Consensus 1493 ~~~k~y 1498 (1674)
T KOG0951|consen 1493 TPKKEY 1498 (1674)
T ss_pred CchHHH
Confidence 766554
No 142
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.59 E-value=8.5e-13 Score=145.78 Aligned_cols=65 Identities=23% Similarity=0.309 Sum_probs=53.5
Q ss_pred CCCCChHHHHHHHHHHh---cC------CcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHH
Q psy16633 37 GWLEPTLIQERAIPLIL---QN------KDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQL 107 (540)
Q Consensus 37 g~~~pt~~Q~~ai~~il---~g------kd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~ 107 (540)
|| ++++-|.+.+..+. .+ +.++|.|+||+|||++|++|++-... ..+.+++|-+.|+.|-+|+
T Consensus 23 ~~-e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~-------~~~k~vVIST~T~~LQeQL 94 (697)
T PRK11747 23 GF-IPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIAR-------AEKKKLVISTATVALQEQL 94 (697)
T ss_pred CC-CcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHH-------HcCCeEEEEcCCHHHHHHH
Confidence 77 79999999665554 33 56899999999999999999986543 2578899999999999998
Q ss_pred HH
Q psy16633 108 HK 109 (540)
Q Consensus 108 ~~ 109 (540)
..
T Consensus 95 ~~ 96 (697)
T PRK11747 95 VS 96 (697)
T ss_pred Hh
Confidence 53
No 143
>KOG1000|consensus
Probab=99.53 E-value=5.4e-13 Score=133.27 Aligned_cols=308 Identities=13% Similarity=0.150 Sum_probs=200.4
Q ss_pred CCChHHHHHHHHHHhc-CCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhh
Q psy16633 39 LEPTLIQERAIPLILQ-NKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMK 117 (540)
Q Consensus 39 ~~pt~~Q~~ai~~il~-gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~ 117 (540)
..+-|+|.+-+..+++ |..+++.-..|-|||.-+ +.+...+ . ...-.||+||. .+-..|.+.+..+...
T Consensus 197 s~LlPFQreGv~faL~RgGR~llADeMGLGKTiQA-laIA~yy-r-------aEwplliVcPA-svrftWa~al~r~lps 266 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALERGGRILLADEMGLGKTIQA-LAIARYY-R-------AEWPLLIVCPA-SVRFTWAKALNRFLPS 266 (689)
T ss_pred HhhCchhhhhHHHHHhcCCeEEEecccccchHHHH-HHHHHHH-h-------hcCcEEEEecH-HHhHHHHHHHHHhccc
Confidence 3457899999877765 778999999999999854 3444333 2 35668999996 5667888889988877
Q ss_pred cCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCCcHHHHHHHHHhCC
Q psy16633 118 CSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLP 197 (540)
Q Consensus 118 ~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~l~ 197 (540)
+.. +..+.++.+.. ..+-....|.|.+.+.+..+-.. .....+.++|+||.|.+-+. -....+.+...+.
T Consensus 267 ~~p---i~vv~~~~D~~---~~~~t~~~v~ivSye~ls~l~~~---l~~~~~~vvI~DEsH~Lk~s-ktkr~Ka~~dllk 336 (689)
T KOG1000|consen 267 IHP---IFVVDKSSDPL---PDVCTSNTVAIVSYEQLSLLHDI---LKKEKYRVVIFDESHMLKDS-KTKRTKAATDLLK 336 (689)
T ss_pred ccc---eEEEecccCCc---cccccCCeEEEEEHHHHHHHHHH---HhcccceEEEEechhhhhcc-chhhhhhhhhHHH
Confidence 643 33333333211 11223457889998876543221 12155899999999977654 3444666666666
Q ss_pred cccceeeEeeecc----H---------------HHHHHHHHhcCCCeE-EEecCC-------------------------
Q psy16633 198 KLYQAILASATLS----E---------------DVLSLKHLILRNPVI-LKLEEP------------------------- 232 (540)
Q Consensus 198 ~~~q~il~SATl~----~---------------~~~~~~~~~l~~p~~-i~~~~~------------------------- 232 (540)
....+|++|.|+. . +..++...+|..-.+ .-.+-+
T Consensus 337 ~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dv 416 (689)
T KOG1000|consen 337 VAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADV 416 (689)
T ss_pred HhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6678999999962 1 112222233221100 000000
Q ss_pred --CCCCCCCeEEEEEEcCc-----------------------c--------------cHHHHHHHHHHh-----cccCCc
Q psy16633 233 --AIAPVSQLAHYHILAQE-----------------------D--------------EKATILYTLLKL-----NLVQGK 268 (540)
Q Consensus 233 --~~~~~~~l~~~~~~~~~-----------------------~--------------~k~~~l~~ll~~-----~~~~~k 268 (540)
..++ .-.+..+.+.. . -|...+.+.+-. ...+.|
T Consensus 417 L~qLPp--Krr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~K 494 (689)
T KOG1000|consen 417 LKQLPP--KRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRK 494 (689)
T ss_pred HhhCCc--cceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCce
Confidence 0111 11111111110 0 011111111111 123458
Q ss_pred EEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCC-cc--EEEeCCCCccCCcccccccccccccCc
Q psy16633 269 TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGL-YD--VIIASDEKALETPQINSTNNRKRKRDK 345 (540)
Q Consensus 269 ~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~-~~--iLIaT~~~~~~~~~~~~~~~~~~~~~~ 345 (540)
.+||+-.....+.+..++.+.+++..-+.|..+..+|....+.|+..+ +. ||--|
T Consensus 495 flVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsIt---------------------- 552 (689)
T KOG1000|consen 495 FLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSIT---------------------- 552 (689)
T ss_pred EEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEe----------------------
Confidence 999999999999999999999999999999999999999999998653 33 33333
Q ss_pred cccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEE
Q psy16633 346 ESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSF 392 (540)
Q Consensus 346 ~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~ 392 (540)
+.+.|+++...++|+...+++++.-.+|.=-|+.|.|+...+.+.
T Consensus 553 --A~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ 597 (689)
T KOG1000|consen 553 --AAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQ 597 (689)
T ss_pred --ecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEE
Confidence 788999999999999999999999999999999999987554433
No 144
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.53 E-value=2.5e-13 Score=147.45 Aligned_cols=137 Identities=13% Similarity=0.122 Sum_probs=91.6
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcc----cc
Q psy16633 59 LVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVD----VS 134 (540)
Q Consensus 59 li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~----~~ 134 (540)
+..+.+|||||.+|+-.+-..+ ..|..+||++|...|..|+.+.++..+. ...+..+.++.. ..
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l--------~~Gk~vLvLvPEi~lt~q~~~rl~~~f~----~~~v~~lhS~l~~~~R~~ 231 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATL--------RAGRGALVVVPDQRDVDRLEAALRALLG----AGDVAVLSAGLGPADRYR 231 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHH--------HcCCeEEEEecchhhHHHHHHHHHHHcC----CCcEEEECCCCCHHHHHH
Confidence 3444469999998876665554 3577899999999999999999998763 123444544433 33
Q ss_pred cchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccc--cC-C--cH-HHHHHHHHhCCcccceeeEeee
Q psy16633 135 VQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVF--SF-G--YE-DDMKAVLKFLPKLYQAILASAT 208 (540)
Q Consensus 135 ~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~--~~-~--~~-~~l~~i~~~l~~~~q~il~SAT 208 (540)
.+.....+...||||| ++..+..+.++++|||||-|--. +. + |. .++...... ..++.+|+.|||
T Consensus 232 ~w~~~~~G~~~IViGt--------RSAvFaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~-~~~~~lvLgSaT 302 (665)
T PRK14873 232 RWLAVLRGQARVVVGT--------RSAVFAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAH-QHGCALLIGGHA 302 (665)
T ss_pred HHHHHhCCCCcEEEEc--------ceeEEeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHH-HcCCcEEEECCC
Confidence 3445556778999999 55555555899999999999321 11 1 11 223222222 246789999999
Q ss_pred ccHHHHHH
Q psy16633 209 LSEDVLSL 216 (540)
Q Consensus 209 l~~~~~~~ 216 (540)
++-+....
T Consensus 303 PSles~~~ 310 (665)
T PRK14873 303 RTAEAQAL 310 (665)
T ss_pred CCHHHHHH
Confidence 98665543
No 145
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.52 E-value=3.2e-14 Score=113.00 Aligned_cols=81 Identities=32% Similarity=0.519 Sum_probs=77.1
Q ss_pred HHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccccccccccCccccccccCCCCCcCE
Q psy16633 281 KLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSN 360 (540)
Q Consensus 281 ~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~ 360 (540)
.++..|+..++.+..+||+++..+|..++..|++|...+||+|+ .+++|+|+++++.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~-----------------------~~~~Gi~~~~~~~ 58 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATD-----------------------VAERGLDLPGVDL 58 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECC-----------------------hhhCCcChhcCCE
Confidence 46678888899999999999999999999999999999999999 9999999999999
Q ss_pred EEeCCCCCCcccchhccccccCCC
Q psy16633 361 VINFDFPLDIQCYIHRAGRTARGK 384 (540)
Q Consensus 361 Vi~~d~p~s~~~yiqr~GRagR~g 384 (540)
||.+++|.+...|.|++||++|.|
T Consensus 59 vi~~~~~~~~~~~~Q~~gR~~R~g 82 (82)
T smart00490 59 VIIYDLPWSPASYIQRIGRAGRAG 82 (82)
T ss_pred EEEeCCCCCHHHHHHhhcccccCC
Confidence 999999999999999999999975
No 146
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.49 E-value=2.6e-12 Score=142.68 Aligned_cols=71 Identities=24% Similarity=0.332 Sum_probs=58.0
Q ss_pred CCCCCChHHHHHHHHHHhc----CCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHH
Q psy16633 36 LGWLEPTLIQERAIPLILQ----NKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNI 111 (540)
Q Consensus 36 ~g~~~pt~~Q~~ai~~il~----gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l 111 (540)
+...+|++.|.+.+..+.. |+.+++.||||+|||++|++|++..... .+.+++|.++|+.|-.|+.+..
T Consensus 11 ~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~-------~~~~viist~t~~lq~q~~~~~ 83 (654)
T COG1199 11 FPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYARE-------EGKKVIISTRTKALQEQLLEED 83 (654)
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHH-------cCCcEEEECCCHHHHHHHHHhh
Confidence 3444899999999865543 4569999999999999999999987644 4588999999999999997765
Q ss_pred HH
Q psy16633 112 QE 113 (540)
Q Consensus 112 ~~ 113 (540)
..
T Consensus 84 ~~ 85 (654)
T COG1199 84 LP 85 (654)
T ss_pred cc
Confidence 44
No 147
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.47 E-value=1.3e-11 Score=126.31 Aligned_cols=236 Identities=21% Similarity=0.230 Sum_probs=169.9
Q ss_pred CCCEEEEChHHHHHHHhc-----CcCCccCCccEEEEcCccccccCCcH--HHHHHHHHhCCcc----------------
Q psy16633 143 RPDIVVATPARALAHLKA-----KTLDLKSSLEIVIIDEADLVFSFGYE--DDMKAVLKFLPKL---------------- 199 (540)
Q Consensus 143 ~~~Ivv~Tp~~l~~~l~~-----~~~~~~~~l~~lViDEah~l~~~~~~--~~l~~i~~~l~~~---------------- 199 (540)
.+|||||+|=-|...+.. ...++++++.++|+|.||.++-.+|. ..+...+...|+.
T Consensus 131 ~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~~~~~DfsRVR~w~Ldg 210 (442)
T PF06862_consen 131 SSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKKSHDTDFSRVRPWYLDG 210 (442)
T ss_pred cCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHcC
Confidence 589999999998888864 34566799999999999976644333 3333334444432
Q ss_pred -----cceeeEeeeccHHHHHHHHHhcCCCe-EEEecCCC------CCCCCCeEEEEEEcC-------cccHHHHH----
Q psy16633 200 -----YQAILASATLSEDVLSLKHLILRNPV-ILKLEEPA------IAPVSQLAHYHILAQ-------EDEKATIL---- 256 (540)
Q Consensus 200 -----~q~il~SATl~~~~~~~~~~~l~~p~-~i~~~~~~------~~~~~~l~~~~~~~~-------~~~k~~~l---- 256 (540)
+|+|++|+...+++..+....+.|.. .+++.... ......+.|.+...+ .+.++...
T Consensus 211 ~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~i 290 (442)
T PF06862_consen 211 QAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKI 290 (442)
T ss_pred cchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHHH
Confidence 69999999999999999988777642 22222111 122334556555433 12333322
Q ss_pred -HHHHHhcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCccccc
Q psy16633 257 -YTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINS 335 (540)
Q Consensus 257 -~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~ 335 (540)
-.+.+ ....+.+|||++|--+-.++..+|++.++..+.+|-..+..+-...-..|..|+..+|+-|.--
T Consensus 291 LP~l~~-~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~--------- 360 (442)
T PF06862_consen 291 LPQLKR-DSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERF--------- 360 (442)
T ss_pred HHHhhh-ccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHH---------
Confidence 22222 2345689999999999999999999999999999999999998999999999999999999731
Q ss_pred ccccccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCC------CceEEEEeccccccc
Q psy16633 336 TNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKN------QGTALSFVSLREQDL 400 (540)
Q Consensus 336 ~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~------~g~~i~~~~~~e~~~ 400 (540)
-+-+-..+.++..||.|.+|..+.-|-..++-.+.... .+.+.++++.-|.-.
T Consensus 361 ------------HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~ 419 (442)
T PF06862_consen 361 ------------HFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALR 419 (442)
T ss_pred ------------hhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHH
Confidence 34456778899999999999999888777655443332 578888888776433
No 148
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.47 E-value=1.4e-12 Score=143.24 Aligned_cols=309 Identities=17% Similarity=0.135 Sum_probs=175.7
Q ss_pred hHHHHHHHHHHhc----CC----cEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHH
Q psy16633 42 TLIQERAIPLILQ----NK----DVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQE 113 (540)
Q Consensus 42 t~~Q~~ai~~il~----gk----d~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~ 113 (540)
..+|.+|...+.. .. =++-.|.||||||++= .-|+..|.. ...+.|..|..-.|.|..|.-+.+++
T Consensus 410 F~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aN-ARImyaLsd-----~~~g~RfsiALGLRTLTLQTGda~r~ 483 (1110)
T TIGR02562 410 FRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLAN-ARAMYALRD-----DKQGARFAIALGLRSLTLQTGHALKT 483 (1110)
T ss_pred cchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHH-HHHHHHhCC-----CCCCceEEEEccccceeccchHHHHH
Confidence 4799999988865 21 1677899999999863 233333322 35677888888888888888776665
Q ss_pred HHhhcCCCceEEEeecCcc-------------------------------------------cccchhhhh--------C
Q psy16633 114 LTMKCSRDVKCVDISEQVD-------------------------------------------VSVQEPLLV--------E 142 (540)
Q Consensus 114 l~~~~~~~i~~~~~~~~~~-------------------------------------------~~~~~~~l~--------~ 142 (540)
-..--..++ .++.|+.. .......+. -
T Consensus 484 rL~L~~ddL--AVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll 561 (1110)
T TIGR02562 484 RLNLSDDDL--AVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLL 561 (1110)
T ss_pred hcCCCccce--EEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhh
Confidence 332111111 11111100 000000010 0
Q ss_pred CCCEEEEChHHHHHHHh--cCcCC----ccCCccEEEEcCccccccCCcHHHHHHHHHhCC-cccceeeEeeeccHHHHH
Q psy16633 143 RPDIVVATPARALAHLK--AKTLD----LKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLP-KLYQAILASATLSEDVLS 215 (540)
Q Consensus 143 ~~~Ivv~Tp~~l~~~l~--~~~~~----~~~~l~~lViDEah~l~~~~~~~~l~~i~~~l~-~~~q~il~SATl~~~~~~ 215 (540)
..+++|||++.++.... ++... +.-.-+.|||||+|.+-... ...+..++..+. -...+++||||+|+.+..
T Consensus 562 ~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~-~~~L~rlL~w~~~lG~~VlLmSATLP~~l~~ 640 (1110)
T TIGR02562 562 AAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPED-LPALLRLVQLAGLLGSRVLLSSATLPPALVK 640 (1110)
T ss_pred cCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHH-HHHHHHHHHHHHHcCCCEEEEeCCCCHHHHH
Confidence 26799999999887762 21111 11124689999999332221 123333333222 247899999999987654
Q ss_pred H-HH----------HhcCC---CeEE---EecCCCCC---------------------------CCCCeEEEEEEcCcc-
Q psy16633 216 L-KH----------LILRN---PVIL---KLEEPAIA---------------------------PVSQLAHYHILAQED- 250 (540)
Q Consensus 216 ~-~~----------~~l~~---p~~i---~~~~~~~~---------------------------~~~~l~~~~~~~~~~- 250 (540)
. .. ..... |..+ -+++.... .+..-.-..+.++..
T Consensus 641 ~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~~~~~ 720 (1110)
T TIGR02562 641 TLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLSLSSLP 720 (1110)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEeecCCcc
Confidence 2 11 12222 2111 11111100 000011122233321
Q ss_pred ----cHHH-----HHHHHHHhc-------ccCCc----EEEEecChhhHHHHHHHHHhC------CCceEEeCCCCCHHH
Q psy16633 251 ----EKAT-----ILYTLLKLN-------LVQGK----TIIFVNTVDKCYKLKLYLEQF------KISTCVLNSELPAKA 304 (540)
Q Consensus 251 ----~k~~-----~l~~ll~~~-------~~~~k----~IIF~~s~~~~~~l~~~L~~~------~~~~~~l~~~l~~~~ 304 (540)
.... +...++.++ ...+| .+|-+++++.+..++..|-.. .+.++++||..+...
T Consensus 721 ~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~ 800 (1110)
T TIGR02562 721 RENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLL 800 (1110)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHH
Confidence 1111 112222221 11222 478888888888888877643 356889999999999
Q ss_pred HHHHHHHH-----------------------h---cCCccEEEeCCCCccCCcccccccccccccCccccccccCCCCCc
Q psy16633 305 RCHAVYQF-----------------------N---QGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFV 358 (540)
Q Consensus 305 r~~i~~~F-----------------------~---~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v 358 (540)
|..+.+.. + ++...|+|+|+ +++.|+|+. .
T Consensus 801 Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tq-----------------------v~E~g~D~d-f 856 (1110)
T TIGR02562 801 RSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATP-----------------------VEEVGRDHD-Y 856 (1110)
T ss_pred HHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEee-----------------------eEEEEeccc-C
Confidence 88876553 1 14678999999 899999974 4
Q ss_pred CEEEeCCCCCCcccchhccccccCCCC
Q psy16633 359 SNVINFDFPLDIQCYIHRAGRTARGKN 385 (540)
Q Consensus 359 ~~Vi~~d~p~s~~~yiqr~GRagR~g~ 385 (540)
+++| --|.+..+.+||+||+.|.+.
T Consensus 857 d~~~--~~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 857 DWAI--ADPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred Ceee--eccCcHHHHHHHhhccccccc
Confidence 4443 336789999999999999775
No 149
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.47 E-value=1.8e-11 Score=136.29 Aligned_cols=74 Identities=12% Similarity=0.122 Sum_probs=60.0
Q ss_pred CCCCChHHHHHHHHHHh----cCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHH
Q psy16633 37 GWLEPTLIQERAIPLIL----QNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQ 112 (540)
Q Consensus 37 g~~~pt~~Q~~ai~~il----~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~ 112 (540)
-|..++|.|.+.+..+. .|+++++.||||+|||++.+.|++...... ....+++|++.|..-..|+.+.++
T Consensus 7 Py~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~-----~~~~kIiy~sRThsQl~q~i~Elk 81 (705)
T TIGR00604 7 PYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEK-----PEVRKIIYASRTHSQLEQATEELR 81 (705)
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhc-----cccccEEEEcccchHHHHHHHHHH
Confidence 35566899998876654 478999999999999999999999876432 234789999999999999999988
Q ss_pred HHH
Q psy16633 113 ELT 115 (540)
Q Consensus 113 ~l~ 115 (540)
...
T Consensus 82 ~~~ 84 (705)
T TIGR00604 82 KLM 84 (705)
T ss_pred hhh
Confidence 853
No 150
>KOG0384|consensus
Probab=99.45 E-value=3.6e-13 Score=147.26 Aligned_cols=318 Identities=17% Similarity=0.207 Sum_probs=203.7
Q ss_pred CCChHHHHHHHHHHhc----CCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHH
Q psy16633 39 LEPTLIQERAIPLILQ----NKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQEL 114 (540)
Q Consensus 39 ~~pt~~Q~~ai~~il~----gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l 114 (540)
.+++.+|-+-+..++. +.++|+.-..|-|||.- .+..|..+.... ...+-.||+||.-.+ ..|.+.+..+
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvq-ti~fl~~l~~~~----~~~gpflvvvplst~-~~W~~ef~~w 442 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQ-TITFLSYLFHSL----QIHGPFLVVVPLSTI-TAWEREFETW 442 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchH-HHHHHHHHHHhh----hccCCeEEEeehhhh-HHHHHHHHHH
Confidence 6889999998887764 67899999999999964 444455554421 234557888997665 4566666666
Q ss_pred HhhcCCCceEEEeecCcccccchh---hh-hC-----CCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCCc
Q psy16633 115 TMKCSRDVKCVDISEQVDVSVQEP---LL-VE-----RPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGY 185 (540)
Q Consensus 115 ~~~~~~~i~~~~~~~~~~~~~~~~---~l-~~-----~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~ 185 (540)
+ ++++++..|........+ .. .. +++++++|.+.++.--.. +.- -.+.+++|||||++-...
T Consensus 443 ~-----~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~--L~~-i~w~~~~vDeahrLkN~~- 513 (1373)
T KOG0384|consen 443 T-----DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAE--LSK-IPWRYLLVDEAHRLKNDE- 513 (1373)
T ss_pred h-----hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhh--hcc-CCcceeeecHHhhcCchH-
Confidence 5 456666666554322211 11 12 478999999987643221 111 456899999999886432
Q ss_pred HHHHHHHHHhCCcccceeeEeeecc-HHHHHHHHHh-cCCC---------------------------------------
Q psy16633 186 EDDMKAVLKFLPKLYQAILASATLS-EDVLSLKHLI-LRNP--------------------------------------- 224 (540)
Q Consensus 186 ~~~l~~i~~~l~~~~q~il~SATl~-~~~~~~~~~~-l~~p--------------------------------------- 224 (540)
..+...+..+.-+ .-++++.|+- +.+..+..+. +-.|
T Consensus 514 -~~l~~~l~~f~~~-~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkd 591 (1373)
T KOG0384|consen 514 -SKLYESLNQFKMN-HRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKD 591 (1373)
T ss_pred -HHHHHHHHHhccc-ceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhh
Confidence 2222223333322 3455556642 2222222111 0000
Q ss_pred ----------eEEEecCCCC---------------------CCCCC-----------eEEEEEEcCcccH----------
Q psy16633 225 ----------VILKLEEPAI---------------------APVSQ-----------LAHYHILAQEDEK---------- 252 (540)
Q Consensus 225 ----------~~i~~~~~~~---------------------~~~~~-----------l~~~~~~~~~~~k---------- 252 (540)
.++.++-... ..... -.|-|+.-..+.+
T Consensus 592 vekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~ 671 (1373)
T KOG0384|consen 592 VEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMR 671 (1373)
T ss_pred hccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcch
Confidence 1111110000 00000 0111222111111
Q ss_pred HHHHHHHHH--------------hcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhc---C
Q psy16633 253 ATILYTLLK--------------LNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQ---G 315 (540)
Q Consensus 253 ~~~l~~ll~--------------~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~---g 315 (540)
...|..+++ +...+.++|||..-+....-|.++|...++..--+.|..+-+.|...+..|+. .
T Consensus 672 d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~Sd 751 (1373)
T KOG0384|consen 672 DEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSD 751 (1373)
T ss_pred HHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCC
Confidence 123333332 22234699999999999999999999999999999999999999999999986 4
Q ss_pred CccEEEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCce--EEEEe
Q psy16633 316 LYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGT--ALSFV 393 (540)
Q Consensus 316 ~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~--~i~~~ 393 (540)
.+..|+||- +-+-|||+-..+.||.||..+++..=.|...||-|.|++-. ++-||
T Consensus 752 dFvFLLSTR-----------------------AGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLV 808 (1373)
T KOG0384|consen 752 DFVFLLSTR-----------------------AGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLV 808 (1373)
T ss_pred ceEEEEecc-----------------------cCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEe
Confidence 677999999 88899999999999999999999999999999999998755 44555
Q ss_pred ccc
Q psy16633 394 SLR 396 (540)
Q Consensus 394 ~~~ 396 (540)
+.+
T Consensus 809 Tk~ 811 (1373)
T KOG0384|consen 809 TKN 811 (1373)
T ss_pred cCC
Confidence 544
No 151
>KOG0392|consensus
Probab=99.44 E-value=1.1e-11 Score=135.44 Aligned_cols=318 Identities=15% Similarity=0.175 Sum_probs=199.0
Q ss_pred ChHHHHHHHHHHh--c--CCcEEEEcCCCchHHHHHHHHHHHHHHhhccc-ccCCCeEEEEEcCcHHHHHHHHHHHHHHH
Q psy16633 41 PTLIQERAIPLIL--Q--NKDVLVRARTGSGKTGAFAIPMIQKIINLKQT-AQVQETKALVLSPSKELCNQLHKNIQELT 115 (540)
Q Consensus 41 pt~~Q~~ai~~il--~--gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~-~~~~~~~vlil~Pt~~La~q~~~~l~~l~ 115 (540)
++.+|++-+..+. + +=+.|.+-..|-|||+-.+.-+.....+++.. ......-.||+||. .|+-.|...+.+++
T Consensus 976 LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf~ 1054 (1549)
T KOG0392|consen 976 LRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKFF 1054 (1549)
T ss_pred HHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHhc
Confidence 4788999887653 2 33689999999999997554444444333221 12234448999995 78999999999987
Q ss_pred hhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCCcHHHHHHHHHh
Q psy16633 116 MKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKF 195 (540)
Q Consensus 116 ~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~ 195 (540)
.. +++....|........+.-.++.+|+|++++.+.+-+..- ....+.|.|+||-|.+-.. ...+.+..+.
T Consensus 1055 pf----L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~l---~~~~wNYcVLDEGHVikN~--ktkl~kavkq 1125 (1549)
T KOG0392|consen 1055 PF----LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDYL---IKIDWNYCVLDEGHVIKNS--KTKLTKAVKQ 1125 (1549)
T ss_pred ch----hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHHH---HhcccceEEecCcceecch--HHHHHHHHHH
Confidence 65 3444444443333333333356799999999886543221 1145679999999976543 2333334444
Q ss_pred CCcccceeeEeeecc-HHHHH---HHH-----------------------------------------------------
Q psy16633 196 LPKLYQAILASATLS-EDVLS---LKH----------------------------------------------------- 218 (540)
Q Consensus 196 l~~~~q~il~SATl~-~~~~~---~~~----------------------------------------------------- 218 (540)
+..+ .-+.+|.|+- +++.+ +..
T Consensus 1126 L~a~-hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~L 1204 (1549)
T KOG0392|consen 1126 LRAN-HRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLL 1204 (1549)
T ss_pred Hhhc-ceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHH
Confidence 4433 3455677751 11111 000
Q ss_pred -----HhcCC--CeE----------------------------EEecCCCCCCCCC--------e-------EEE-EEEc
Q psy16633 219 -----LILRN--PVI----------------------------LKLEEPAIAPVSQ--------L-------AHY-HILA 247 (540)
Q Consensus 219 -----~~l~~--p~~----------------------------i~~~~~~~~~~~~--------l-------~~~-~~~~ 247 (540)
..+.+ |.+ ...+.... .... + .|- .+..
T Consensus 1205 RRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~-S~gt~~~HvFqaLqYlrKLcnHpaLvlt 1283 (1549)
T KOG0392|consen 1205 RRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEE-SLGTDKTHVFQALQYLRKLCNHPALVLT 1283 (1549)
T ss_pred HHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchh-ccCcchHHHHHHHHHHHHhcCCcceeeC
Confidence 00000 000 00000000 0000 0 000 0000
Q ss_pred C-----------------------cccHHHHHHHHHHhcc---------------cCCcEEEEecChhhHHHHHHHHHhC
Q psy16633 248 Q-----------------------EDEKATILYTLLKLNL---------------VQGKTIIFVNTVDKCYKLKLYLEQF 289 (540)
Q Consensus 248 ~-----------------------~~~k~~~l~~ll~~~~---------------~~~k~IIF~~s~~~~~~l~~~L~~~ 289 (540)
+ ...|...|..++.... .+.++||||.-++...-+..-|-+.
T Consensus 1284 ~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~ 1363 (1549)
T KOG0392|consen 1284 PVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKK 1363 (1549)
T ss_pred CCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhh
Confidence 0 1124455555554322 2348999999999999998877664
Q ss_pred CC---ceEEeCCCCCHHHHHHHHHHHhcC-CccEEEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEeCC
Q psy16633 290 KI---STCVLNSELPAKARCHAVYQFNQG-LYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFD 365 (540)
Q Consensus 290 ~~---~~~~l~~~l~~~~r~~i~~~F~~g-~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d 365 (540)
.+ ....+.|..++.+|.++.++||++ .++||+-|.. +-+-|+|+.+.+.||.++
T Consensus 1364 ~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTTh----------------------VGGLGLNLTGADTVVFvE 1421 (1549)
T KOG0392|consen 1364 YMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTH----------------------VGGLGLNLTGADTVVFVE 1421 (1549)
T ss_pred hcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeee----------------------ccccccccCCCceEEEEe
Confidence 33 334789999999999999999998 8999888875 778999999999999999
Q ss_pred CCCCcccchhccccccCCCCCceEEEE
Q psy16633 366 FPLDIQCYIHRAGRTARGKNQGTALSF 392 (540)
Q Consensus 366 ~p~s~~~yiqr~GRagR~g~~g~~i~~ 392 (540)
-.|++..=.|..-||-|.|++-.+-++
T Consensus 1422 HDWNPMrDLQAMDRAHRIGQKrvVNVy 1448 (1549)
T KOG0392|consen 1422 HDWNPMRDLQAMDRAHRIGQKRVVNVY 1448 (1549)
T ss_pred cCCCchhhHHHHHHHHhhcCceeeeee
Confidence 999999999999999999998765544
No 152
>KOG0389|consensus
Probab=99.43 E-value=1.1e-11 Score=130.48 Aligned_cols=122 Identities=16% Similarity=0.178 Sum_probs=100.6
Q ss_pred HHHHHHHHHHhc-ccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCC--ccEEEeCCCCcc
Q psy16633 252 KATILYTLLKLN-LVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGL--YDVIIASDEKAL 328 (540)
Q Consensus 252 k~~~l~~ll~~~-~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~--~~iLIaT~~~~~ 328 (540)
|...|..++... ..+.++|||..-.....-|-..|...+++.+-+.|..+-..|+.++.+|+..+ .-.|.+|-
T Consensus 762 K~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTK---- 837 (941)
T KOG0389|consen 762 KCRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTK---- 837 (941)
T ss_pred hHhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeec----
Confidence 455555555432 23469999999999888888899999999999999999999999999998754 45778888
Q ss_pred CCcccccccccccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCC--ceEEEEeccc
Q psy16633 329 ETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQ--GTALSFVSLR 396 (540)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~--g~~i~~~~~~ 396 (540)
+-+.|||+...++||.||+..++-.=.|.--|+.|.|+. -.++.+++..
T Consensus 838 -------------------AGG~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~ 888 (941)
T KOG0389|consen 838 -------------------AGGFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKS 888 (941)
T ss_pred -------------------cCcceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecC
Confidence 888999999999999999999988888999999999875 4455566543
No 153
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.38 E-value=2.1e-11 Score=133.62 Aligned_cols=124 Identities=21% Similarity=0.196 Sum_probs=96.9
Q ss_pred cccHHHH-HHHHHHhcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCc
Q psy16633 249 EDEKATI-LYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327 (540)
Q Consensus 249 ~~~k~~~-l~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~ 327 (540)
...|+.. +..+......+.|+||-+.|++.++.|+..|.+.|++.-++|+... .++.-+-.=....-.|-|||+
T Consensus 610 ~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h--~~EAeIVA~AG~~GaVTIATN--- 684 (1112)
T PRK12901 610 KREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLH--QKEAEIVAEAGQPGTVTIATN--- 684 (1112)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccch--hhHHHHHHhcCCCCcEEEecc---
Confidence 3445544 4455555667779999999999999999999999999999988744 333322222233467999999
Q ss_pred cCCcccccccccccccCccccccccCCCC--------CcCEEEeCCCCCCcccchhccccccCCCCCceEEEEecccc
Q psy16633 328 LETPQINSTNNRKRKRDKESGVSRGIDFQ--------FVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLRE 397 (540)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~GiD~~--------~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e 397 (540)
+++||.|+. +==+||-...+.|..---|-.||+||.|.+|.+-.|++-+|
T Consensus 685 --------------------MAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLED 742 (1112)
T PRK12901 685 --------------------MAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLED 742 (1112)
T ss_pred --------------------CcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEccc
Confidence 999999996 22378888889999988999999999999999999998554
No 154
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.31 E-value=2.8e-12 Score=110.09 Aligned_cols=136 Identities=16% Similarity=0.215 Sum_probs=81.7
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCccc
Q psy16633 54 QNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDV 133 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~ 133 (540)
+|+-.++..++|+|||--.+.-++...+. .+.++|||.|||.++..+.+.++... +++....-.
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~-------~~~rvLvL~PTRvva~em~~aL~~~~------~~~~t~~~~--- 66 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIK-------RRLRVLVLAPTRVVAEEMYEALKGLP------VRFHTNARM--- 66 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHH-------TT--EEEEESSHHHHHHHHHHTTTSS------EEEESTTSS---
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHH-------ccCeEEEecccHHHHHHHHHHHhcCC------cccCceeee---
Confidence 45567899999999998666656655544 68899999999999999998887442 222211000
Q ss_pred ccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCC--cHHHHHHHHHhCCcccceeeEeeeccH
Q psy16633 134 SVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFG--YEDDMKAVLKFLPKLYQAILASATLSE 211 (540)
Q Consensus 134 ~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~--~~~~l~~i~~~l~~~~q~il~SATl~~ 211 (540)
....++.-|-++|.+.+...+.+ .... .++++||+||||..-... +...+..... . ....+|+||||+|.
T Consensus 67 ----~~~~g~~~i~vMc~at~~~~~~~-p~~~-~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~-~-g~~~~i~mTATPPG 138 (148)
T PF07652_consen 67 ----RTHFGSSIIDVMCHATYGHFLLN-PCRL-KNYDVIIMDECHFTDPTSIAARGYLRELAE-S-GEAKVIFMTATPPG 138 (148)
T ss_dssp --------SSSSEEEEEHHHHHHHHHT-SSCT-TS-SEEEECTTT--SHHHHHHHHHHHHHHH-T-TS-EEEEEESS-TT
T ss_pred ----ccccCCCcccccccHHHHHHhcC-cccc-cCccEEEEeccccCCHHHHhhheeHHHhhh-c-cCeeEEEEeCCCCC
Confidence 01124556889999998887766 4444 789999999999532221 1122222211 1 23579999999987
Q ss_pred HH
Q psy16633 212 DV 213 (540)
Q Consensus 212 ~~ 213 (540)
..
T Consensus 139 ~~ 140 (148)
T PF07652_consen 139 SE 140 (148)
T ss_dssp --
T ss_pred CC
Confidence 54
No 155
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.23 E-value=7.3e-10 Score=119.36 Aligned_cols=291 Identities=17% Similarity=0.201 Sum_probs=175.8
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCccccc
Q psy16633 56 KDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSV 135 (540)
Q Consensus 56 kd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~ 135 (540)
.-.+|.||.|||||.+ ++..++..+. .+..++|++.-.++|+.+....++..+-.- -....... +....
T Consensus 50 ~V~vVRSpMGTGKTta-Li~wLk~~l~------~~~~~VLvVShRrSL~~sL~~rf~~~~l~g--Fv~Y~d~~-~~~i~- 118 (824)
T PF02399_consen 50 GVLVVRSPMGTGKTTA-LIRWLKDALK------NPDKSVLVVSHRRSLTKSLAERFKKAGLSG--FVNYLDSD-DYIID- 118 (824)
T ss_pred CeEEEECCCCCCcHHH-HHHHHHHhcc------CCCCeEEEEEhHHHHHHHHHHHHhhcCCCc--ceeeeccc-ccccc-
Confidence 3478999999999985 4555554432 468899999999999999999887653210 11111111 11111
Q ss_pred chhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCCcH-------HHHHHHHHhCCcccceeeEeee
Q psy16633 136 QEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYE-------DDMKAVLKFLPKLYQAILASAT 208 (540)
Q Consensus 136 ~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~~-------~~l~~i~~~l~~~~q~il~SAT 208 (540)
....+-+++..+.|.... . .+..+.++|||||+-..+..=|. ..+..+...+.....+|+|-||
T Consensus 119 -----~~~~~rLivqIdSL~R~~---~-~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ 189 (824)
T PF02399_consen 119 -----GRPYDRLIVQIDSLHRLD---G-SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDAD 189 (824)
T ss_pred -----ccccCeEEEEehhhhhcc---c-ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCC
Confidence 013456677766664332 1 12267899999999866654222 2222233445556789999999
Q ss_pred ccHHHHHHHHHhcCCC-eEEEecCCCCCCCCCeEEEEEE----------------------------------cCcccHH
Q psy16633 209 LSEDVLSLKHLILRNP-VILKLEEPAIAPVSQLAHYHIL----------------------------------AQEDEKA 253 (540)
Q Consensus 209 l~~~~~~~~~~~l~~p-~~i~~~~~~~~~~~~l~~~~~~----------------------------------~~~~~k~ 253 (540)
+++...++......+. +.+..++-..+....-.-..+. ....+..
T Consensus 190 ln~~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (824)
T PF02399_consen 190 LNDQTVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDET 269 (824)
T ss_pred CCHHHHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchh
Confidence 9999888887764433 3222222110000000000000 0001222
Q ss_pred HHHHHHHHhcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCccc
Q psy16633 254 TILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQI 333 (540)
Q Consensus 254 ~~l~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~ 333 (540)
.....++.....+.++-||++|...++.++.+...++.++.+++|.-+..+ + +.| ++++|+|=|.
T Consensus 270 tF~~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d---v-~~W--~~~~VviYT~--------- 334 (824)
T PF02399_consen 270 TFFSELLARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED---V-ESW--KKYDVVIYTP--------- 334 (824)
T ss_pred hHHHHHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc---c-ccc--cceeEEEEec---------
Confidence 333333333334556778999999999999999999999999999876662 2 233 6799999999
Q ss_pred ccccccccccCccccccccCCCCCcC--EEEeC--CCC--CCcccchhccccccCCCCCceEEEEeccc
Q psy16633 334 NSTNNRKRKRDKESGVSRGIDFQFVS--NVINF--DFP--LDIQCYIHRAGRTARGKNQGTALSFVSLR 396 (540)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~GiD~~~v~--~Vi~~--d~p--~s~~~yiqr~GRagR~g~~g~~i~~~~~~ 396 (540)
++..|++|.... -|+-| ... .+..+..|++||+-.- .....+++++..
T Consensus 335 --------------~itvG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l-~~~ei~v~~d~~ 388 (824)
T PF02399_consen 335 --------------VITVGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSL-LDNEIYVYIDAS 388 (824)
T ss_pred --------------eEEEEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhh-ccCeEEEEEecc
Confidence 899999996443 23333 222 2455679999997443 345555555543
No 156
>KOG2340|consensus
Probab=99.20 E-value=2.9e-10 Score=114.89 Aligned_cols=338 Identities=19% Similarity=0.240 Sum_probs=212.2
Q ss_pred CCChHHHHHHHHHHhcCCcEEEEcCC-CchH--HHHHHHHHHHHHHhhccc-----------------------ccCCCe
Q psy16633 39 LEPTLIQERAIPLILQNKDVLVRART-GSGK--TGAFAIPMIQKIINLKQT-----------------------AQVQET 92 (540)
Q Consensus 39 ~~pt~~Q~~ai~~il~gkd~li~a~T-GsGK--T~a~~ipil~~l~~~~~~-----------------------~~~~~~ 92 (540)
..+|+.|.+.+....+.+|++..-.| +.|+ +-.|++.+|+++++.+.. .+-..+
T Consensus 215 ~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tRp 294 (698)
T KOG2340|consen 215 EPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTRP 294 (698)
T ss_pred CcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCCc
Confidence 46799999999999999998754333 3444 456999999999865321 011247
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHHhhcCCC-ceEE---EeecCccc----c--------cchhh-----------------
Q psy16633 93 KALVLSPSKELCNQLHKNIQELTMKCSRD-VKCV---DISEQVDV----S--------VQEPL----------------- 139 (540)
Q Consensus 93 ~vlil~Pt~~La~q~~~~l~~l~~~~~~~-i~~~---~~~~~~~~----~--------~~~~~----------------- 139 (540)
+|||+||+|+-|..+...+..+......+ ..+. -..|+... . .....
T Consensus 295 kVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ftk 374 (698)
T KOG2340|consen 295 KVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFTK 374 (698)
T ss_pred eEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHHH
Confidence 89999999999999998888874322111 0000 00011100 0 00000
Q ss_pred -----h--hCCCCEEEEChHHHHHHHhc-----CcCCccCCccEEEEcCccccccCCcHHHHHHHHHhC---Ccc-----
Q psy16633 140 -----L--VERPDIVVATPARALAHLKA-----KTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFL---PKL----- 199 (540)
Q Consensus 140 -----l--~~~~~Ivv~Tp~~l~~~l~~-----~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~l---~~~----- 199 (540)
. ....||+||+|=-|.-.+.+ ....+++++.++|||-||.++..+|+ .+..|+.++ |..
T Consensus 375 KtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwE-hl~~ifdHLn~~P~k~h~~D 453 (698)
T KOG2340|consen 375 KTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWE-HLLHIFDHLNLQPSKQHDVD 453 (698)
T ss_pred HHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHH-HHHHHHHHhhcCcccccCCC
Confidence 0 13589999999988777753 23566699999999999988766544 455555544 321
Q ss_pred ----------------cceeeEeeeccHHHHHHHHHhcCCCeE-EEe---cCCC--CCCCCCeEEEE--EEc-----Ccc
Q psy16633 200 ----------------YQAILASATLSEDVLSLKHLILRNPVI-LKL---EEPA--IAPVSQLAHYH--ILA-----QED 250 (540)
Q Consensus 200 ----------------~q~il~SATl~~~~~~~~~~~l~~p~~-i~~---~~~~--~~~~~~l~~~~--~~~-----~~~ 250 (540)
+|++++|+--.+....+....+.|-.- +.. .... ....-.+.|.+ +.+ ..+
T Consensus 454 fSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~D 533 (698)
T KOG2340|consen 454 FSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETPD 533 (698)
T ss_pred hhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCch
Confidence 589999998888888777766654311 111 0000 00001111111 111 133
Q ss_pred cHHHHHHHHHHhccc---CCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCc
Q psy16633 251 EKATILYTLLKLNLV---QGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327 (540)
Q Consensus 251 ~k~~~l~~ll~~~~~---~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~ 327 (540)
.++.....-+--... ..-+|||.++--+--++..++++..+....+|---+...-...-.-|-.|...+|+-|..-
T Consensus 534 ~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~- 612 (698)
T KOG2340|consen 534 ARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERA- 612 (698)
T ss_pred HHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhh-
Confidence 444443332221111 2357999999999999999999888776666655444444556677999999999999732
Q ss_pred cCCcccccccccccccCccccccccCCCCCcCEEEeCCCCCCcccc---hhccccccCCCC----CceEEEEeccccc
Q psy16633 328 LETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCY---IHRAGRTARGKN----QGTALSFVSLREQ 398 (540)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~y---iqr~GRagR~g~----~g~~i~~~~~~e~ 398 (540)
-+-+-.++.+|..||.|.+|..+.-| +.+.+|+.-.|+ .-.|.++++.-+.
T Consensus 613 --------------------hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~ 670 (698)
T KOG2340|consen 613 --------------------HFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDR 670 (698)
T ss_pred --------------------hhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhh
Confidence 34567899999999999999998766 566677654442 2345566665553
No 157
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.15 E-value=3.9e-10 Score=111.78 Aligned_cols=73 Identities=21% Similarity=0.243 Sum_probs=57.4
Q ss_pred CChHHHHHH----HHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHH
Q psy16633 40 EPTLIQERA----IPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQEL 114 (540)
Q Consensus 40 ~pt~~Q~~a----i~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l 114 (540)
.|+|.|.+. ...+.+|+++++.||||+|||+++++|++..+...+. ...+.+++|.++|..+..|....+++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~--~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPE--RIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcc--cccccceeEEeccHHHHHHHHHHHHhc
Confidence 479999994 4555568999999999999999999999987654221 012358999999999998887777665
No 158
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.15 E-value=3.9e-10 Score=111.78 Aligned_cols=73 Identities=21% Similarity=0.243 Sum_probs=57.4
Q ss_pred CChHHHHHH----HHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHH
Q psy16633 40 EPTLIQERA----IPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQEL 114 (540)
Q Consensus 40 ~pt~~Q~~a----i~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l 114 (540)
.|+|.|.+. ...+.+|+++++.||||+|||+++++|++..+...+. ...+.+++|.++|..+..|....+++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~--~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPE--RIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcc--cccccceeEEeccHHHHHHHHHHHHhc
Confidence 479999994 4555568999999999999999999999987654221 012358999999999998887777665
No 159
>KOG0386|consensus
Probab=99.12 E-value=5.9e-10 Score=120.29 Aligned_cols=315 Identities=18% Similarity=0.210 Sum_probs=196.0
Q ss_pred CCCChHHHHHHHHHHhc---C-CcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHH
Q psy16633 38 WLEPTLIQERAIPLILQ---N-KDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQE 113 (540)
Q Consensus 38 ~~~pt~~Q~~ai~~il~---g-kd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~ 113 (540)
-..+..+|..-+..... + =+-+..-.+|-|||.. .|.++-.+++.+. ..|+ -||+||+-.|.+ |...+..
T Consensus 392 GG~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQ-tIsLitYLmE~K~---~~GP-~LvivPlstL~N-W~~Ef~k 465 (1157)
T KOG0386|consen 392 GGELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQ-TISLITYLMEHKQ---MQGP-FLIIVPLSTLVN-WSSEFPK 465 (1157)
T ss_pred CCCCchhhhhhhHHHhhccCCCcccccchhcccchHHH-HHHHHHHHHHHcc---cCCC-eEEeccccccCC-chhhccc
Confidence 34788999998877654 2 3578888999999974 6677777776543 2344 588899988864 3444444
Q ss_pred HHhhcCCCceEEEeecCccc--ccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCC-------
Q psy16633 114 LTMKCSRDVKCVDISEQVDV--SVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFG------- 184 (540)
Q Consensus 114 l~~~~~~~i~~~~~~~~~~~--~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~------- 184 (540)
++ +++..+...|.-.. ..+.....++.+|+++|.+.+.. ...+.-.-++.++||||.|+|-...
T Consensus 466 Wa----PSv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik---dk~lLsKI~W~yMIIDEGHRmKNa~~KLt~~L 538 (1157)
T KOG0386|consen 466 WA----PSVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK---DKALLSKISWKYMIIDEGHRMKNAICKLTDTL 538 (1157)
T ss_pred cc----cceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC---CHHHHhccCCcceeecccccccchhhHHHHHh
Confidence 43 35555555443221 11223344789999999988754 2112112456799999999876421
Q ss_pred ---cH----------------HHHHHHHHhC-Ccc--------------cceee--Eeeec-------------------
Q psy16633 185 ---YE----------------DDMKAVLKFL-PKL--------------YQAIL--ASATL------------------- 209 (540)
Q Consensus 185 ---~~----------------~~l~~i~~~l-~~~--------------~q~il--~SATl------------------- 209 (540)
|. ..+..+++++ |.. ++..+ +.+|-
T Consensus 539 ~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlL 618 (1157)
T KOG0386|consen 539 NTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLL 618 (1157)
T ss_pred hccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHH
Confidence 11 1222222221 210 11111 11110
Q ss_pred -----------cHHHHHHH------------------------------------------HHhcCCCeEEEecCCCCCC
Q psy16633 210 -----------SEDVLSLK------------------------------------------HLILRNPVILKLEEPAIAP 236 (540)
Q Consensus 210 -----------~~~~~~~~------------------------------------------~~~l~~p~~i~~~~~~~~~ 236 (540)
|+.++... +..|+.|....-.+
T Consensus 619 RRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve----- 693 (1157)
T KOG0386|consen 619 RRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVE----- 693 (1157)
T ss_pred HhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhc-----
Confidence 11110000 00111111000000
Q ss_pred CCCeEEEE---EEcCcccHHHHHHHHH-HhcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHH
Q psy16633 237 VSQLAHYH---ILAQEDEKATILYTLL-KLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQF 312 (540)
Q Consensus 237 ~~~l~~~~---~~~~~~~k~~~l~~ll-~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F 312 (540)
..+...+ -.+...-|+.+|..++ ++...+++++.||.-..-..-+-.+|.-.+++...+.|.....+|...+..|
T Consensus 694 -~~~~~~~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~F 772 (1157)
T KOG0386|consen 694 -NSYTLHYDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIF 772 (1157)
T ss_pred -cccccccChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHh
Confidence 0000000 0111234666666665 3445678999999998888888888888888999999999999999999999
Q ss_pred hcCC---ccEEEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceE
Q psy16633 313 NQGL---YDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389 (540)
Q Consensus 313 ~~g~---~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~ 389 (540)
|... +..|.+|. +-+.|+|++..+.||.||..+++....|+.-||-|.|+.-.+
T Consensus 773 N~Pds~yf~Fllstr-----------------------agglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~ev 829 (1157)
T KOG0386|consen 773 NAPDSPYFIFLLSTR-----------------------AGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEV 829 (1157)
T ss_pred cCCCCceeeeeeeec-----------------------ccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhhe
Confidence 8754 34666777 788999999999999999999999999999999999987666
Q ss_pred EEEec
Q psy16633 390 LSFVS 394 (540)
Q Consensus 390 i~~~~ 394 (540)
-++..
T Consensus 830 Rv~rl 834 (1157)
T KOG0386|consen 830 RVLRL 834 (1157)
T ss_pred eeeee
Confidence 65554
No 160
>KOG0921|consensus
Probab=99.11 E-value=1.6e-09 Score=115.48 Aligned_cols=333 Identities=17% Similarity=0.183 Sum_probs=200.4
Q ss_pred HHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHH-----HHhhcCC
Q psy16633 46 ERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQE-----LTMKCSR 120 (540)
Q Consensus 46 ~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~-----l~~~~~~ 120 (540)
...+.++..+.-++|.+.||+|||.-+.--+|+.++++.. .....+.+.-|++-.+..+.+.+.+ .+.-|+.
T Consensus 384 ~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~---g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy 460 (1282)
T KOG0921|consen 384 SEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSN---GASFNAVVSQPRRISAISLAERVANERGEEVGETCGY 460 (1282)
T ss_pred HHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccc---cccccceeccccccchHHHHHHHHHhhHHhhcccccc
Confidence 3344455556679999999999999998888988887532 3345577788988877777765543 2222222
Q ss_pred CceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCCcHHHHHHHHHhC---C
Q psy16633 121 DVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFL---P 197 (540)
Q Consensus 121 ~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~l---~ 197 (540)
.++....+ -.....|+.||-+.+++++.+.. ..+.++++||.|..--.+ .-+..++.-+ .
T Consensus 461 ~vRf~Sa~-----------prpyg~i~fctvgvllr~~e~gl----rg~sh~i~deiherdv~~--dfll~~lr~m~~ty 523 (1282)
T KOG0921|consen 461 NVRFDSAT-----------PRPYGSIMFCTVGVLLRMMENGL----RGISHVIIDEIHERDVDT--DFVLIVLREMISTY 523 (1282)
T ss_pred cccccccc-----------cccccceeeeccchhhhhhhhcc----cccccccchhhhhhccch--HHHHHHHHhhhccc
Confidence 22221111 11234699999999999988763 567899999999432111 1222222222 2
Q ss_pred cccceeeEeeeccHHHHH--------------------HHHHhcCCCeEEEe-----------cCCCC-CCCCCeEEEEE
Q psy16633 198 KLYQAILASATLSEDVLS--------------------LKHLILRNPVILKL-----------EEPAI-APVSQLAHYHI 245 (540)
Q Consensus 198 ~~~q~il~SATl~~~~~~--------------------~~~~~l~~p~~i~~-----------~~~~~-~~~~~l~~~~~ 245 (540)
+...+++||||+..+.-. +....+..+..... +.... ...+.-..+-.
T Consensus 524 ~dl~v~lmsatIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~ 603 (1282)
T KOG0921|consen 524 RDLRVVLMSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNI 603 (1282)
T ss_pred hhhhhhhhhcccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhccccccc
Confidence 344566777776543321 11111111100000 00000 00000000111
Q ss_pred EcCc----------------ccHHHHHHHHHH---hcccCCcEEEEecChhhHHHHHHHHHhC-------CCceEEeCCC
Q psy16633 246 LAQE----------------DEKATILYTLLK---LNLVQGKTIIFVNTVDKCYKLKLYLEQF-------KISTCVLNSE 299 (540)
Q Consensus 246 ~~~~----------------~~k~~~l~~ll~---~~~~~~k~IIF~~s~~~~~~l~~~L~~~-------~~~~~~l~~~ 299 (540)
.+++ ...+.++..++. .....+-+++|.+-......|..+|... ...+.-+|+.
T Consensus 604 ~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq 683 (1282)
T KOG0921|consen 604 LCDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQ 683 (1282)
T ss_pred ccChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhh
Confidence 1110 112233333333 3345678999999999998888887653 3467788999
Q ss_pred CCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEeCCC-------------
Q psy16633 300 LPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDF------------- 366 (540)
Q Consensus 300 l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~------------- 366 (540)
++..+..++.+....|..++++.|+ .....+.+.++..||..+.
T Consensus 684 ~~~~eqrkvf~~~p~gv~kii~stn-----------------------iaetsiTidd~v~vid~cka~~~~~~s~nn~~ 740 (1282)
T KOG0921|consen 684 LTSQEQRKVFEPVPEGVTKIILSTN-----------------------IAETSITIDDVVYVIDSCKAKEKLFTSHNNMT 740 (1282)
T ss_pred cccHhhhhccCcccccccccccccc-----------------------eeeEeeeecceeEEEeeeeeeeeeecccccee
Confidence 9999999999999999999999999 6667777777776665332
Q ss_pred -----CCCcccchhccccccCCCCCceEEEEeccccccccccccchhhhhhhhhHHHHHHH
Q psy16633 367 -----PLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVN 422 (540)
Q Consensus 367 -----p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~i~ 422 (540)
..|..+.+||.||+||. ++|.|..+++.--...+.+.-..+.......++...+.
T Consensus 741 ~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs~arF~~l~~~~t~em~r~plhemalTik 800 (1282)
T KOG0921|consen 741 HYATVWASKTNLEQRKGRAGRV-RPGFCFHLCSRARFEALEDHGTAEMFRTPLHEIALTIK 800 (1282)
T ss_pred eeeeecccccchHhhcccCcee-cccccccccHHHHHHHHHhcCcHhhhcCccHHHHhhHH
Confidence 23667778999999996 68999999887666666655554444444444444443
No 161
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.01 E-value=5.9e-09 Score=104.30 Aligned_cols=146 Identities=21% Similarity=0.161 Sum_probs=82.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccc
Q psy16633 55 NKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVS 134 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~ 134 (540)
.+.+++.-.+|+|||...+. ++..+..... ......+||+||. .+..||...+..++... ...+....|.....
T Consensus 25 ~~g~lL~de~GlGKT~~~i~-~~~~l~~~~~--~~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~--~~~v~~~~~~~~~~ 98 (299)
T PF00176_consen 25 PRGGLLADEMGLGKTITAIA-LISYLKNEFP--QRGEKKTLIVVPS-SLLSQWKEEIEKWFDPD--SLRVIIYDGDSERR 98 (299)
T ss_dssp T-EEEE---TTSSHHHHHHH-HHHHHHHCCT--TSS-S-EEEEE-T-TTHHHHHHHHHHHSGT---TS-EEEESSSCHHH
T ss_pred CCCEEEEECCCCCchhhhhh-hhhhhhhccc--cccccceeEeecc-chhhhhhhhhccccccc--cccccccccccccc
Confidence 35699999999999986544 4444433210 1122359999999 77789999999887532 45666665554111
Q ss_pred cchhhhhCCCCEEEEChHHHHHHHhc---CcCCccCCccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEeeecc
Q psy16633 135 VQEPLLVERPDIVVATPARALAHLKA---KTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLS 210 (540)
Q Consensus 135 ~~~~~l~~~~~Ivv~Tp~~l~~~l~~---~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~SATl~ 210 (540)
..........+++|+|.+.+...... ..+.. -++++||+||+|.+-+.. ......+..+. ....+++|||+-
T Consensus 99 ~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~-~~~~~vIvDEaH~~k~~~--s~~~~~l~~l~-~~~~~lLSgTP~ 173 (299)
T PF00176_consen 99 RLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQ-IKWDRVIVDEAHRLKNKD--SKRYKALRKLR-ARYRWLLSGTPI 173 (299)
T ss_dssp HTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHT-SEEEEEEETTGGGGTTTT--SHHHHHHHCCC-ECEEEEE-SS-S
T ss_pred cccccccccceeeecccccccccccccccccccc-ccceeEEEeccccccccc--ccccccccccc-cceEEeeccccc
Confidence 22222235789999999998811000 00111 348899999999885433 22333333354 556788999963
No 162
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.01 E-value=1.1e-08 Score=111.17 Aligned_cols=130 Identities=17% Similarity=0.156 Sum_probs=87.2
Q ss_pred CCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHh
Q psy16633 37 GWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTM 116 (540)
Q Consensus 37 g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~ 116 (540)
|. +|..+| .+-.+.-+..-++.+.||-|||+++.+|+.-..+ .|..+.+++..--||.--.++...+..
T Consensus 78 g~-~~~dVQ--liG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL--------~gkgVhvVTvNdYLA~RDae~m~~l~~ 146 (822)
T COG0653 78 GM-RHFDVQ--LLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNAL--------AGKGVHVVTVNDYLARRDAEWMGPLYE 146 (822)
T ss_pred CC-ChhhHH--HhhhhhhcCCceeeeecCCchHHHHHHHHHHHhc--------CCCCcEEeeehHHhhhhCHHHHHHHHH
Confidence 44 455555 4545555567899999999999999999754432 466677778788899888888888888
Q ss_pred hcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHH-----HHHHh-cCcCCccCCccEEEEcCccccc
Q psy16633 117 KCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARA-----LAHLK-AKTLDLKSSLEIVIIDEADLVF 181 (540)
Q Consensus 117 ~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l-----~~~l~-~~~~~~~~~l~~lViDEah~l~ 181 (540)
+. +++++....+.....+... -.+||.++|-..+ .+.+. +..-.....+.+-|+||+|-++
T Consensus 147 ~L--GlsvG~~~~~m~~~ek~~a--Y~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSIL 213 (822)
T COG0653 147 FL--GLSVGVILAGMSPEEKRAA--YACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSIL 213 (822)
T ss_pred Hc--CCceeeccCCCChHHHHHH--HhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhee
Confidence 88 5666666555544433333 4689999997654 22221 1111122567888899988644
No 163
>KOG1002|consensus
Probab=98.98 E-value=7.5e-08 Score=96.94 Aligned_cols=110 Identities=15% Similarity=0.103 Sum_probs=88.4
Q ss_pred CCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcC-CccEEEeCCCCccCCcccccccccccccC
Q psy16633 266 QGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQG-LYDVIIASDEKALETPQINSTNNRKRKRD 344 (540)
Q Consensus 266 ~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g-~~~iLIaT~~~~~~~~~~~~~~~~~~~~~ 344 (540)
..|.|||..-.....-+.-.|.+.|+.|..+.|+|++..|...++.|.+. .+.|++.+-.
T Consensus 638 t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLk------------------- 698 (791)
T KOG1002|consen 638 TAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLK------------------- 698 (791)
T ss_pred chhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEec-------------------
Confidence 34789999888888888888999999999999999999999999999765 4555554431
Q ss_pred ccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCC--CceEEEEecccc
Q psy16633 345 KESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKN--QGTALSFVSLRE 397 (540)
Q Consensus 345 ~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~--~g~~i~~~~~~e 397 (540)
+-+..+|+...+.|+..|+.+++.--.|.--|..|.|+ +-.++.|+..+.
T Consensus 699 ---AGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEns 750 (791)
T KOG1002|consen 699 ---AGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENS 750 (791)
T ss_pred ---cCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhcc
Confidence 44556788899999999999999888887778888775 456777776543
No 164
>KOG4439|consensus
Probab=98.92 E-value=4.2e-08 Score=102.64 Aligned_cols=104 Identities=15% Similarity=0.115 Sum_probs=83.9
Q ss_pred cCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhc--CCccEEEeCCCCccCCcccccccccccc
Q psy16633 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQ--GLYDVIIASDEKALETPQINSTNNRKRK 342 (540)
Q Consensus 265 ~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~--g~~~iLIaT~~~~~~~~~~~~~~~~~~~ 342 (540)
...+++|...-.....-+...|.+.|.....+||....++|..+++.|+. |..+|++-+=.
T Consensus 745 skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLt----------------- 807 (901)
T KOG4439|consen 745 SKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLT----------------- 807 (901)
T ss_pred ccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEc-----------------
Confidence 34567776666666667778899999999999999999999999999975 43454443321
Q ss_pred cCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEE
Q psy16633 343 RDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTAL 390 (540)
Q Consensus 343 ~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i 390 (540)
+-+.|+|+-+.+++|..|+-+++.-=.|..-|.-|.|++-.++
T Consensus 808 -----AGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~ 850 (901)
T KOG4439|consen 808 -----AGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVF 850 (901)
T ss_pred -----cCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceE
Confidence 5678999999999999999999999999999999999865443
No 165
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=98.86 E-value=1.1e-07 Score=109.56 Aligned_cols=119 Identities=22% Similarity=0.204 Sum_probs=99.8
Q ss_pred cHHHHHHHHH-H-hcccCC--cEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcC--CccEEEeCC
Q psy16633 251 EKATILYTLL-K-LNLVQG--KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQG--LYDVIIASD 324 (540)
Q Consensus 251 ~k~~~l~~ll-~-~~~~~~--k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g--~~~iLIaT~ 324 (540)
.|...+..++ . ....+. +++||++......-+...|+..++..+.++|.++.+.|...+..|+.+ ..-+++++.
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~k 771 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLK 771 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEec
Confidence 4566666666 2 222344 899999999999999999999998999999999999999999999986 445555665
Q ss_pred CCccCCcccccccccccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEE
Q psy16633 325 EKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSF 392 (540)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~ 392 (540)
+.+.|+|+...+.||.||..+++....|...|+-|.|+...+-++
T Consensus 772 -----------------------agg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~ 816 (866)
T COG0553 772 -----------------------AGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVY 816 (866)
T ss_pred -----------------------ccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEE
Confidence 889999999999999999999999999999999999887654443
No 166
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.85 E-value=2e-07 Score=106.19 Aligned_cols=140 Identities=26% Similarity=0.202 Sum_probs=96.6
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCccccc
Q psy16633 56 KDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSV 135 (540)
Q Consensus 56 kd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~ 135 (540)
+..+|+=-||||||++.. .+.+.++.. ...+.+++||-.++|-.|..+.+..+...+.... ...+...
T Consensus 274 ~~G~IWHtqGSGKTlTm~-~~A~~l~~~-----~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~------~~~s~~~ 341 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMF-KLARLLLEL-----PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP------KAESTSE 341 (962)
T ss_pred CceEEEeecCCchHHHHH-HHHHHHHhc-----cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc------cccCHHH
Confidence 458999999999999643 344455442 5788999999999999999999999886652111 2223344
Q ss_pred chhhhhCC-CCEEEEChHHHHHHHhcC-cCCccCCccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEeeeccH
Q psy16633 136 QEPLLVER-PDIVVATPARALAHLKAK-TLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSE 211 (540)
Q Consensus 136 ~~~~l~~~-~~Ivv~Tp~~l~~~l~~~-~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~SATl~~ 211 (540)
....+... ..|+|+|-+.|-...... .......-=++|+||||+ ..++..-..+...+++ ...++||+|+-.
T Consensus 342 Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHR---SQ~G~~~~~~~~~~~~-a~~~gFTGTPi~ 415 (962)
T COG0610 342 LKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHR---SQYGELAKLLKKALKK-AIFIGFTGTPIF 415 (962)
T ss_pred HHHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhh---ccccHHHHHHHHHhcc-ceEEEeeCCccc
Confidence 44455433 489999999988877654 111213334789999994 3455555555556664 689999999753
No 167
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.78 E-value=6.9e-08 Score=93.40 Aligned_cols=132 Identities=19% Similarity=0.241 Sum_probs=94.4
Q ss_pred HCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHH
Q psy16633 35 KLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQEL 114 (540)
Q Consensus 35 ~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l 114 (540)
.+|+ .|+++|--++=.+..|+ ++...||-|||++..+|++-..+ .|..|-|++.+..||..=++.+..+
T Consensus 73 ~~g~-~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL--------~G~~V~vvT~NdyLA~RD~~~~~~~ 141 (266)
T PF07517_consen 73 TLGL-RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNAL--------QGKGVHVVTSNDYLAKRDAEEMRPF 141 (266)
T ss_dssp HTS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHT--------TSS-EEEEESSHHHHHHHHHHHHHH
T ss_pred HcCC-cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHH--------hcCCcEEEeccHHHhhccHHHHHHH
Confidence 3577 89999999997776666 99999999999998888765543 5778889999999999999999999
Q ss_pred HhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHH-HHHhcC----c-CCccCCccEEEEcCccccc
Q psy16633 115 TMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARAL-AHLKAK----T-LDLKSSLEIVIIDEADLVF 181 (540)
Q Consensus 115 ~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~-~~l~~~----~-~~~~~~l~~lViDEah~l~ 181 (540)
...+ ++++..+.++......... -.++|+++|...+. +.++.. . ......+.++||||+|.++
T Consensus 142 y~~L--Glsv~~~~~~~~~~~r~~~--Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 142 YEFL--GLSVGIITSDMSSEERREA--YAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHHT--T--EEEEETTTEHHHHHHH--HHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHHh--hhccccCccccCHHHHHHH--HhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 9988 6787777776654333322 25689999998864 344332 1 2223789999999999655
No 168
>KOG0388|consensus
Probab=98.66 E-value=7.8e-07 Score=93.22 Aligned_cols=115 Identities=16% Similarity=0.153 Sum_probs=96.9
Q ss_pred cHHHHHHHHHH-hcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCc-cEEEeCCCCcc
Q psy16633 251 EKATILYTLLK-LNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLY-DVIIASDEKAL 328 (540)
Q Consensus 251 ~k~~~l~~ll~-~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~-~iLIaT~~~~~ 328 (540)
.|+..|..++. +...+.++|+|+.-.....-+-.+|.-.++...-+.|.....+|..++.+|+...+ -.|++|.
T Consensus 1028 gKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTR---- 1103 (1185)
T KOG0388|consen 1028 GKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTR---- 1103 (1185)
T ss_pred cceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecc----
Confidence 34444555543 33456699999999999999999999999999999999999999999999988654 4567787
Q ss_pred CCcccccccccccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCce
Q psy16633 329 ETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGT 388 (540)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~ 388 (540)
+-+-||++...+.||.||..+++..=.|...||.|-|+.-.
T Consensus 1104 -------------------AGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrd 1144 (1185)
T KOG0388|consen 1104 -------------------AGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRD 1144 (1185)
T ss_pred -------------------cCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccc
Confidence 78899999999999999999999999999999999987543
No 169
>KOG1015|consensus
Probab=98.60 E-value=2.9e-06 Score=91.64 Aligned_cols=117 Identities=18% Similarity=0.188 Sum_probs=95.3
Q ss_pred HHHHHHHHHHh-cccCCcEEEEecChhhHHHHHHHHHhC----------------------CCceEEeCCCCCHHHHHHH
Q psy16633 252 KATILYTLLKL-NLVQGKTIIFVNTVDKCYKLKLYLEQF----------------------KISTCVLNSELPAKARCHA 308 (540)
Q Consensus 252 k~~~l~~ll~~-~~~~~k~IIF~~s~~~~~~l~~~L~~~----------------------~~~~~~l~~~l~~~~r~~i 308 (540)
|..+|..+++. ..++.|.|||..+.....-+..+|.-. |....-+.|.....+|...
T Consensus 1127 KmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~ 1206 (1567)
T KOG1015|consen 1127 KMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKW 1206 (1567)
T ss_pred ceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHH
Confidence 34456666654 346779999999999988888888632 3455678888999999999
Q ss_pred HHHHhcCC----ccEEEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCC
Q psy16633 309 VYQFNQGL----YDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384 (540)
Q Consensus 309 ~~~F~~g~----~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g 384 (540)
..+||.-. --.||+|- +-+-|||+-..+-||.||..|++.-=+|-+=|+-|.|
T Consensus 1207 ~~~FNdp~NlRaRl~LISTR-----------------------AGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfG 1263 (1567)
T KOG1015|consen 1207 AEEFNDPTNLRARLFLISTR-----------------------AGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFG 1263 (1567)
T ss_pred HHHhcCcccceeEEEEEeec-----------------------cCccccceeecceEEEEecccCCccchHHHHHHHhhc
Confidence 99998742 34899998 8899999999999999999999999999999999999
Q ss_pred CCceEEE
Q psy16633 385 NQGTALS 391 (540)
Q Consensus 385 ~~g~~i~ 391 (540)
+.--++.
T Consensus 1264 QtKPvyi 1270 (1567)
T KOG1015|consen 1264 QTKPVYI 1270 (1567)
T ss_pred CcCceee
Confidence 8654443
No 170
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.50 E-value=1.6e-06 Score=96.66 Aligned_cols=146 Identities=15% Similarity=0.143 Sum_probs=87.4
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHH-----HHHhh-c-CCCceEEEee
Q psy16633 56 KDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQ-----ELTMK-C-SRDVKCVDIS 128 (540)
Q Consensus 56 kd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~-----~l~~~-~-~~~i~~~~~~ 128 (540)
.++.+.++||+|||.+|+-.|+...-. -...++||+||+.+.-+.+...+. .++.. . +..+....+.
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~------~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~ 133 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQK------YGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVIN 133 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHH------cCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEe
Confidence 378999999999999988777655422 356789999999999888886665 22221 1 2234444444
Q ss_pred cCcc--------cccchhhhh------CCCCEEEEChHHHHHHHh--c-------CcC-----CccCCccEEEEcCcccc
Q psy16633 129 EQVD--------VSVQEPLLV------ERPDIVVATPARALAHLK--A-------KTL-----DLKSSLEIVIIDEADLV 180 (540)
Q Consensus 129 ~~~~--------~~~~~~~l~------~~~~Ivv~Tp~~l~~~l~--~-------~~~-----~~~~~l~~lViDEah~l 180 (540)
++.. ...-..... ....|+|+|.+.|..-.. . +.. .+...--+||+||.|++
T Consensus 134 S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~ 213 (986)
T PRK15483 134 AGDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRF 213 (986)
T ss_pred cCcccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCC
Confidence 3321 011111111 146899999988754211 0 000 01112247999999988
Q ss_pred ccCCcHHHHHHHHHhCCcccceeeEeeeccH
Q psy16633 181 FSFGYEDDMKAVLKFLPKLYQAILASATLSE 211 (540)
Q Consensus 181 ~~~~~~~~l~~i~~~l~~~~q~il~SATl~~ 211 (540)
-.. ...+..|...-| .+ ++.+|||.++
T Consensus 214 ~~~--~k~~~~i~~lnp-l~-~lrysAT~~~ 240 (986)
T PRK15483 214 PRD--NKFYQAIEALKP-QM-IIRFGATFPD 240 (986)
T ss_pred Ccc--hHHHHHHHhcCc-cc-EEEEeeecCC
Confidence 553 235556644333 22 5679999987
No 171
>KOG0952|consensus
Probab=98.50 E-value=6.5e-08 Score=105.43 Aligned_cols=224 Identities=17% Similarity=0.208 Sum_probs=134.4
Q ss_pred CChHHHHHHHHHHhc-CCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhc
Q psy16633 40 EPTLIQERAIPLILQ-NKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKC 118 (540)
Q Consensus 40 ~pt~~Q~~ai~~il~-gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~ 118 (540)
...|+|.+.+..... ..++++-+|||+|||.+|.+.+...+.. .++.+++++.|-++|...-...+.......
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~------~p~~kvvyIap~kalvker~~Dw~~r~~~~ 1000 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSY------YPGSKVVYIAPDKALVKERSDDWSKRDELP 1000 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhcc------CCCccEEEEcCCchhhcccccchhhhcccC
Confidence 344566655544433 3578999999999999999998877644 567999999999999988777777654433
Q ss_pred CCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhc-CcCCccCCccEEEEcCccccccCCcHHHHHHHHH---
Q psy16633 119 SRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKA-KTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLK--- 194 (540)
Q Consensus 119 ~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~-~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~--- 194 (540)
+++...++|+...+.. -...++++|+||++.....++ .......+++.+|+||.|++.+ +++..++.+..
T Consensus 1001 --g~k~ie~tgd~~pd~~---~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~-~rgPVle~ivsr~n 1074 (1230)
T KOG0952|consen 1001 --GIKVIELTGDVTPDVK---AVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGE-DRGPVLEVIVSRMN 1074 (1230)
T ss_pred --CceeEeccCccCCChh---heecCceEEcccccccCccccccchhhhccccceeecccccccC-CCcceEEEEeeccc
Confidence 6778888887654421 124789999999998777664 2233347899999999997654 44443333322
Q ss_pred ----hCCcccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCC-------CeEEEEEEcCcccHHHHHHHHHHhc
Q psy16633 195 ----FLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVS-------QLAHYHILAQEDEKATILYTLLKLN 263 (540)
Q Consensus 195 ----~l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~-------~l~~~~~~~~~~~k~~~l~~ll~~~ 263 (540)
..++..+.+++|--+.+. ..++...-..+. ........+.+. ...+|+. ....+.......++..
T Consensus 1075 ~~s~~t~~~vr~~glsta~~na-~dla~wl~~~~~-~nf~~svrpvp~~~~i~gfp~~~~cp--rm~smnkpa~qaik~~ 1150 (1230)
T KOG0952|consen 1075 YISSQTEEPVRYLGLSTALANA-NDLADWLNIKDM-YNFRPSVRPVPLEVHIDGFPGQHYCP--RMMSMNKPAFQAIKTH 1150 (1230)
T ss_pred cCccccCcchhhhhHhhhhhcc-HHHHHHhCCCCc-CCCCcccccCCceEeecCCCchhcch--hhhhcccHHHHHHhcC
Confidence 233345666666433321 222221111111 111000000000 0111211 1222333445566767
Q ss_pred ccCCcEEEEecChhhH
Q psy16633 264 LVQGKTIIFVNTVDKC 279 (540)
Q Consensus 264 ~~~~k~IIF~~s~~~~ 279 (540)
.+..+++||+.++...
T Consensus 1151 sp~~p~lifv~srrqt 1166 (1230)
T KOG0952|consen 1151 SPIKPVLIFVSSRRQT 1166 (1230)
T ss_pred CCCCceEEEeeccccc
Confidence 7888999999887653
No 172
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.35 E-value=1.6e-06 Score=83.18 Aligned_cols=72 Identities=24% Similarity=0.376 Sum_probs=51.8
Q ss_pred ChHHHHHHHHHHhcCCc-EEEEcCCCchHHHHHHHHHHHHHHhh-cccccCCCeEEEEEcCcHHHHHHHHHHHHH
Q psy16633 41 PTLIQERAIPLILQNKD-VLVRARTGSGKTGAFAIPMIQKIINL-KQTAQVQETKALVLSPSKELCNQLHKNIQE 113 (540)
Q Consensus 41 pt~~Q~~ai~~il~gkd-~li~a~TGsGKT~a~~ipil~~l~~~-~~~~~~~~~~vlil~Pt~~La~q~~~~l~~ 113 (540)
+.+-|.+|+..++.... .+|.||+|+|||.+ +..++..+... .......+.++|+++|+..-+.++.+.+.+
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~-l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTT-LASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHH-HHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHH-HHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 57889999999999888 99999999999964 33444444210 001135789999999999999999988877
No 173
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.26 E-value=5.3e-06 Score=77.58 Aligned_cols=121 Identities=20% Similarity=0.311 Sum_probs=69.9
Q ss_pred CChHHHHHHHHHHhcCC--cEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhh
Q psy16633 40 EPTLIQERAIPLILQNK--DVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMK 117 (540)
Q Consensus 40 ~pt~~Q~~ai~~il~gk--d~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~ 117 (540)
++++-|++|+..++.++ -+++.++.|+|||.+ +-.+...+ . ..+.++++++||...+..+.+...
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~-~------~~g~~v~~~apT~~Aa~~L~~~~~----- 67 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEAL-E------AAGKRVIGLAPTNKAAKELREKTG----- 67 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHH-H------HTT--EEEEESSHHHHHHHHHHHT-----
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHH-H------hCCCeEEEECCcHHHHHHHHHhhC-----
Confidence 36889999999997654 378899999999963 33344443 3 247899999999988776554411
Q ss_pred cCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCc----CCccCCccEEEEcCccccccCCcHHHHHHHH
Q psy16633 118 CSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKT----LDLKSSLEIVIIDEADLVFSFGYEDDMKAVL 193 (540)
Q Consensus 118 ~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~----~~~~~~l~~lViDEah~l~~~~~~~~l~~i~ 193 (540)
+.+..+. .++....... ..+ ...++||||||-.+.. ..+..++
T Consensus 68 ----~~a~Ti~------------------------~~l~~~~~~~~~~~~~~-~~~~vliVDEasmv~~----~~~~~ll 114 (196)
T PF13604_consen 68 ----IEAQTIH------------------------SFLYRIPNGDDEGRPEL-PKKDVLIVDEASMVDS----RQLARLL 114 (196)
T ss_dssp ----S-EEEHH------------------------HHTTEECCEECCSSCC--TSTSEEEESSGGG-BH----HHHHHHH
T ss_pred ----cchhhHH------------------------HHHhcCCcccccccccC-CcccEEEEecccccCH----HHHHHHH
Confidence 1111111 1110000000 002 5667999999995533 4577777
Q ss_pred HhCCc-ccceeeEe
Q psy16633 194 KFLPK-LYQAILAS 206 (540)
Q Consensus 194 ~~l~~-~~q~il~S 206 (540)
...+. ..+++++-
T Consensus 115 ~~~~~~~~klilvG 128 (196)
T PF13604_consen 115 RLAKKSGAKLILVG 128 (196)
T ss_dssp HHS-T-T-EEEEEE
T ss_pred HHHHhcCCEEEEEC
Confidence 77766 55666554
No 174
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.13 E-value=3.2e-05 Score=75.26 Aligned_cols=159 Identities=14% Similarity=0.179 Sum_probs=103.6
Q ss_pred CChHHHHHHHHHHhc----------CCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHH
Q psy16633 40 EPTLIQERAIPLILQ----------NKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHK 109 (540)
Q Consensus 40 ~pt~~Q~~ai~~il~----------gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~ 109 (540)
.++..|-+++-.+.+ ....++--.||.||.-...--|++..++ ...++|+++.+..|-....+
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~-------Gr~r~vwvS~s~dL~~Da~R 109 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLR-------GRKRAVWVSVSNDLKYDAER 109 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHc-------CCCceEEEECChhhhhHHHH
Confidence 378888888866542 2458888999999987666556666654 34579999999999999999
Q ss_pred HHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCc---C------Ccc--CCccEEEEcCcc
Q psy16633 110 NIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKT---L------DLK--SSLEIVIIDEAD 178 (540)
Q Consensus 110 ~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~---~------~~~--~~l~~lViDEah 178 (540)
.++.++.. .+.+..+..- .... ...-.-.|+++|...|...-..+. . .++ ..-.+||+||||
T Consensus 110 Dl~DIG~~---~i~v~~l~~~-~~~~---~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH 182 (303)
T PF13872_consen 110 DLRDIGAD---NIPVHPLNKF-KYGD---IIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECH 182 (303)
T ss_pred HHHHhCCC---cccceechhh-ccCc---CCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccch
Confidence 99988754 2333333221 0000 011244699999998877653210 0 111 223589999999
Q ss_pred ccccCCc--------HHHHHHHHHhCCcccceeeEeeeccHHH
Q psy16633 179 LVFSFGY--------EDDMKAVLKFLPKLYQAILASATLSEDV 213 (540)
Q Consensus 179 ~l~~~~~--------~~~l~~i~~~l~~~~q~il~SATl~~~~ 213 (540)
.+-...- ...+..+...+|.. +++.+|||--.+.
T Consensus 183 ~akn~~~~~~~~sk~g~avl~LQ~~LP~A-RvvY~SATgasep 224 (303)
T PF13872_consen 183 KAKNLSSGSKKPSKTGIAVLELQNRLPNA-RVVYASATGASEP 224 (303)
T ss_pred hcCCCCccCccccHHHHHHHHHHHhCCCC-cEEEecccccCCC
Confidence 8765532 13455566778754 6999999965433
No 175
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.08 E-value=7.8e-06 Score=76.07 Aligned_cols=143 Identities=17% Similarity=0.208 Sum_probs=75.6
Q ss_pred CChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHH-------HHHHH
Q psy16633 40 EPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQL-------HKNIQ 112 (540)
Q Consensus 40 ~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~-------~~~l~ 112 (540)
-.|.-|..++..++..+-+++.||.|||||+.++..+++.+.+ ....+++|+-|..+....+ .+.+.
T Consensus 4 p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~------g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~ 77 (205)
T PF02562_consen 4 PKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKE------GEYDKIIITRPPVEAGEDLGFLPGDLEEKME 77 (205)
T ss_dssp --SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHT------TS-SEEEEEE-S--TT----SS---------
T ss_pred CCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHh------CCCcEEEEEecCCCCccccccCCCCHHHHHH
Confidence 3578999999999987889999999999999988888888754 4567888888876531111 01110
Q ss_pred HHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCCcHHHHHHH
Q psy16633 113 ELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAV 192 (540)
Q Consensus 113 ~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i 192 (540)
-+....-..+. .+.+ ......+.....|-+.++..+ + ...+ . -.+||+|||+.+. ...++.+
T Consensus 78 p~~~p~~d~l~--~~~~----~~~~~~~~~~~~Ie~~~~~~i----R--Grt~-~-~~~iIvDEaQN~t----~~~~k~i 139 (205)
T PF02562_consen 78 PYLRPIYDALE--ELFG----KEKLEELIQNGKIEIEPLAFI----R--GRTF-D-NAFIIVDEAQNLT----PEELKMI 139 (205)
T ss_dssp TTTHHHHHHHT--TTS-----TTCHHHHHHTTSEEEEEGGGG----T--T--B---SEEEEE-SGGG------HHHHHHH
T ss_pred HHHHHHHHHHH--HHhC----hHhHHHHhhcCeEEEEehhhh----c--Cccc-c-ceEEEEecccCCC----HHHHHHH
Confidence 00000000000 0001 111122223455666664432 2 2222 2 3789999999553 4578889
Q ss_pred HHhCCcccceeeEe
Q psy16633 193 LKFLPKLYQAILAS 206 (540)
Q Consensus 193 ~~~l~~~~q~il~S 206 (540)
+.++..+++++++-
T Consensus 140 lTR~g~~skii~~G 153 (205)
T PF02562_consen 140 LTRIGEGSKIIITG 153 (205)
T ss_dssp HTTB-TT-EEEEEE
T ss_pred HcccCCCcEEEEec
Confidence 99998888887764
No 176
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.04 E-value=3.6e-05 Score=85.89 Aligned_cols=66 Identities=12% Similarity=-0.020 Sum_probs=45.6
Q ss_pred CCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEeee
Q psy16633 142 ERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208 (540)
Q Consensus 142 ~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~SAT 208 (540)
....|+++||..+..-+-.+.+.+ ..+..|||||||++.+..-+..+..+...-.+..-+.+|||.
T Consensus 6 ~~ggi~~~T~rIl~~DlL~~ri~~-~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSds 71 (814)
T TIGR00596 6 LEGGIFSITSRILVVDLLTGIIPP-ELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDN 71 (814)
T ss_pred hcCCEEEEechhhHhHHhcCCCCH-HHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCC
Confidence 456899999999998888888888 999999999999986544333333333333333334444444
No 177
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.00 E-value=5.9e-05 Score=70.86 Aligned_cols=138 Identities=18% Similarity=0.221 Sum_probs=89.2
Q ss_pred CCCCChHHHHHHHHHHhc---CCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHH
Q psy16633 37 GWLEPTLIQERAIPLILQ---NKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQE 113 (540)
Q Consensus 37 g~~~pt~~Q~~ai~~il~---gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~ 113 (540)
++ -.++.|.+......+ |++.+.+.-+|.|||.+ ++|++..++.. ...-+-++|| ++|..|..+.+..
T Consensus 21 ~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAd------g~~LvrviVp-k~Ll~q~~~~L~~ 91 (229)
T PF12340_consen 21 NI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALAD------GSRLVRVIVP-KALLEQMRQMLRS 91 (229)
T ss_pred Cc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcC------CCcEEEEEcC-HHHHHHHHHHHHH
Confidence 44 588999998887775 67899999999999985 78988887652 3345566677 6899999998876
Q ss_pred HH-hhcCCCceEEEeecCcccccch--------hhhhCCCCEEEEChHHHHHHHhc-------CcC----------CccC
Q psy16633 114 LT-MKCSRDVKCVDISEQVDVSVQE--------PLLVERPDIVVATPARALAHLKA-------KTL----------DLKS 167 (540)
Q Consensus 114 l~-~~~~~~i~~~~~~~~~~~~~~~--------~~l~~~~~Ivv~Tp~~l~~~l~~-------~~~----------~~~~ 167 (540)
-. .-++..+-...+.-........ ........|+++||+.+++..-. +.. .++.
T Consensus 92 ~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~~l~ 171 (229)
T PF12340_consen 92 RLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQKWLD 171 (229)
T ss_pred HHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 44 3344444444444333322111 11224567999999997764311 111 1113
Q ss_pred CccEEEEcCccccccC
Q psy16633 168 SLEIVIIDEADLVFSF 183 (540)
Q Consensus 168 ~l~~lViDEah~l~~~ 183 (540)
...-=|+||+|.+++.
T Consensus 172 ~~~rdilDEsDe~L~~ 187 (229)
T PF12340_consen 172 EHSRDILDESDEILSV 187 (229)
T ss_pred hcCCeEeECchhccCc
Confidence 3445689999977764
No 178
>KOG1803|consensus
Probab=97.84 E-value=4.3e-05 Score=79.83 Aligned_cols=65 Identities=23% Similarity=0.412 Sum_probs=52.4
Q ss_pred CChHHHHHHHHHHhcCCc-EEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHH
Q psy16633 40 EPTLIQERAIPLILQNKD-VLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQ 112 (540)
Q Consensus 40 ~pt~~Q~~ai~~il~gkd-~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~ 112 (540)
.+.+-|..|+..+.+.++ .+|.||+|+|||.+...-+.+.+ + .+.++|++.||.+-+..+.+.+.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlv-k-------~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLV-K-------QKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHH-H-------cCCeEEEEcCchHHHHHHHHHhc
Confidence 456889999999998866 78999999999987555444444 3 57899999999999888888544
No 179
>PRK10536 hypothetical protein; Provisional
Probab=97.84 E-value=0.00038 Score=66.74 Aligned_cols=146 Identities=18% Similarity=0.148 Sum_probs=83.5
Q ss_pred CCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHH-------HHH
Q psy16633 37 GWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQ-------LHK 109 (540)
Q Consensus 37 g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q-------~~~ 109 (540)
++.--+..|...+..+.++.-+++.|++|+|||+.+....++.++. ..-.+++|.-|+.+.... ..+
T Consensus 56 ~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~------~~~~kIiI~RP~v~~ge~LGfLPG~~~e 129 (262)
T PRK10536 56 PILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIH------KDVDRIIVTRPVLQADEDLGFLPGDIAE 129 (262)
T ss_pred cccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhc------CCeeEEEEeCCCCCchhhhCcCCCCHHH
Confidence 4444578899999999888889999999999999777666666543 235566777676543221 112
Q ss_pred HHHHHHhhcCCCceEEEeecCcccccchhhh-hCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCCcHHH
Q psy16633 110 NIQELTMKCSRDVKCVDISEQVDVSVQEPLL-VERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDD 188 (540)
Q Consensus 110 ~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l-~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~~~~ 188 (540)
.+.-+....-..+.. +.+... ....+ .....|-|.... +++...+ .-++||+|||+.+.- ..
T Consensus 130 K~~p~~~pi~D~L~~--~~~~~~---~~~~~~~~~~~Iei~~l~----ymRGrtl----~~~~vIvDEaqn~~~----~~ 192 (262)
T PRK10536 130 KFAPYFRPVYDVLVR--RLGASF---MQYCLRPEIGKVEIAPFA----YMRGRTF----ENAVVILDEAQNVTA----AQ 192 (262)
T ss_pred HHHHHHHHHHHHHHH--HhChHH---HHHHHHhccCcEEEecHH----HhcCCcc----cCCEEEEechhcCCH----HH
Confidence 222221111000000 001100 11111 123346666633 3343333 237899999995532 67
Q ss_pred HHHHHHhCCcccceeeE
Q psy16633 189 MKAVLKFLPKLYQAILA 205 (540)
Q Consensus 189 l~~i~~~l~~~~q~il~ 205 (540)
+..++..++.+.+++++
T Consensus 193 ~k~~ltR~g~~sk~v~~ 209 (262)
T PRK10536 193 MKMFLTRLGENVTVIVN 209 (262)
T ss_pred HHHHHhhcCCCCEEEEe
Confidence 88888888888777654
No 180
>KOG1802|consensus
Probab=97.81 E-value=8e-05 Score=78.20 Aligned_cols=77 Identities=22% Similarity=0.236 Sum_probs=63.4
Q ss_pred HHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHH
Q psy16633 32 AIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNI 111 (540)
Q Consensus 32 ~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l 111 (540)
.+...|+..+..-|..|+..+++..-.||++|+|+|||.+..--++ ++.+ .....+|+++|+..-+.|+++.+
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVy-hl~~------~~~~~VLvcApSNiAVDqLaeKI 474 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVY-HLAR------QHAGPVLVCAPSNIAVDQLAEKI 474 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHH-HHHH------hcCCceEEEcccchhHHHHHHHH
Confidence 4556688899999999999999999999999999999987544333 4433 36788999999999999999988
Q ss_pred HHHH
Q psy16633 112 QELT 115 (540)
Q Consensus 112 ~~l~ 115 (540)
.+.+
T Consensus 475 h~tg 478 (935)
T KOG1802|consen 475 HKTG 478 (935)
T ss_pred HhcC
Confidence 8754
No 181
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.81 E-value=0.00039 Score=75.71 Aligned_cols=140 Identities=17% Similarity=0.260 Sum_probs=86.7
Q ss_pred hHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCC
Q psy16633 42 TLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRD 121 (540)
Q Consensus 42 t~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~ 121 (540)
.++|+.|+-.++.++-++|.+++|+|||.+ +..++..+.+.. .....+++++.||..-|..+.+.+.......+
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~-v~~ll~~l~~~~---~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~-- 227 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTT-VAKLLAALIQLA---DGERCRIRLAAPTGKAAARLTESLGKALRQLP-- 227 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHH-HHHHHHHHHHhc---CCCCcEEEEECCcHHHHHHHHHHHHhhhhccc--
Confidence 589999999999999999999999999974 334444443311 12346899999999888877776654332221
Q ss_pred ceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhc------CcCCccCCccEEEEcCccccccCCcHHHHHHHHHh
Q psy16633 122 VKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKA------KTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKF 195 (540)
Q Consensus 122 i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~------~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~ 195 (540)
+.... ......-..|-.+++..... ..... -.+++|||||+-++ + ...+..++..
T Consensus 228 -----~~~~~---------~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~-l~~dvlIvDEaSMv-d---~~lm~~ll~a 288 (615)
T PRK10875 228 -----LTDEQ---------KKRIPEEASTLHRLLGAQPGSQRLRYHAGNP-LHLDVLVVDEASMV-D---LPMMARLIDA 288 (615)
T ss_pred -----cchhh---------hhcCCCchHHHHHHhCcCCCccchhhccccC-CCCCeEEEChHhcc-c---HHHHHHHHHh
Confidence 00000 00001123344444332111 11111 34689999999844 3 3567778888
Q ss_pred CCcccceeeEe
Q psy16633 196 LPKLYQAILAS 206 (540)
Q Consensus 196 l~~~~q~il~S 206 (540)
+|+..++|++-
T Consensus 289 l~~~~rlIlvG 299 (615)
T PRK10875 289 LPPHARVIFLG 299 (615)
T ss_pred cccCCEEEEec
Confidence 99888888774
No 182
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.77 E-value=0.00011 Score=75.25 Aligned_cols=108 Identities=18% Similarity=0.287 Sum_probs=67.7
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccc
Q psy16633 57 DVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQ 136 (540)
Q Consensus 57 d~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~ 136 (540)
-++|.|..|||||+.+ +-++..+.. ...+..++++++...|...+.+.+..... .
T Consensus 3 v~~I~G~aGTGKTvla-~~l~~~l~~-----~~~~~~~~~l~~n~~l~~~l~~~l~~~~~------------~------- 57 (352)
T PF09848_consen 3 VILITGGAGTGKTVLA-LNLAKELQN-----SEEGKKVLYLCGNHPLRNKLREQLAKKYN------------P------- 57 (352)
T ss_pred EEEEEecCCcCHHHHH-HHHHHHhhc-----cccCCceEEEEecchHHHHHHHHHhhhcc------------c-------
Confidence 4789999999999854 334444311 24678899999999998877777665420 0
Q ss_pred hhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCC-------cHHHHHHHHHh
Q psy16633 137 EPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFG-------YEDDMKAVLKF 195 (540)
Q Consensus 137 ~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~-------~~~~l~~i~~~ 195 (540)
......+..+..+.+.+....... ...++|||||||++...+ ....+..++..
T Consensus 58 -----~~~~~~~~~~~~~i~~~~~~~~~~-~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 58 -----KLKKSDFRKPTSFINNYSESDKEK-NKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred -----chhhhhhhhhHHHHhhcccccccC-CcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 111233445555544443111222 689999999999998832 23455555554
No 183
>PF13245 AAA_19: Part of AAA domain
Probab=97.73 E-value=0.00011 Score=57.21 Aligned_cols=60 Identities=25% Similarity=0.469 Sum_probs=40.8
Q ss_pred HHHHHhcCCc-EEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHH
Q psy16633 48 AIPLILQNKD-VLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNI 111 (540)
Q Consensus 48 ai~~il~gkd-~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l 111 (540)
||...+++.. ++|.||.|||||...+ .++..+.... . ..+.++++++||+..+.++.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~-~~i~~l~~~~--~-~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLA-ARIAELLAAR--A-DPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHH-HHHHHHHHHh--c-CCCCeEEEECCCHHHHHHHHHHH
Confidence 4443444444 5669999999997543 4444444311 1 22789999999999999888877
No 184
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.68 E-value=0.00061 Score=74.05 Aligned_cols=141 Identities=20% Similarity=0.275 Sum_probs=85.7
Q ss_pred hHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCC
Q psy16633 42 TLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRD 121 (540)
Q Consensus 42 t~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~ 121 (540)
.++|+.|+..++.++-++|.++.|+|||.+ +..++..+..... ...+.++++++||-.-+..+.+.+........
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~-v~~ll~~l~~~~~--~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~-- 221 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTT-VARLLLALVKQSP--KQGKLRIALAAPTGKAAARLAESLRKAVKNLA-- 221 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHH-HHHHHHHHHHhcc--ccCCCcEEEECCcHHHHHHHHHHHHhhhcccc--
Confidence 379999999999999999999999999974 3444444433211 01136899999998887776666554332210
Q ss_pred ceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhc------CcCCccCCccEEEEcCccccccCCcHHHHHHHHHh
Q psy16633 122 VKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKA------KTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKF 195 (540)
Q Consensus 122 i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~------~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~ 195 (540)
. .. . ......+-..|-.+++..... ..... ..+++||||||-++ + ...+..++..
T Consensus 222 ~-----~~--~-------~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~-l~~dvlIiDEaSMv-d---~~l~~~ll~a 282 (586)
T TIGR01447 222 A-----AE--A-------LIAALPSEAVTIHRLLGIKPDTKRFRHHERNP-LPLDVLVVDEASMV-D---LPLMAKLLKA 282 (586)
T ss_pred c-----ch--h-------hhhccccccchhhhhhcccCCcchhhhcccCC-CcccEEEEcccccC-C---HHHHHHHHHh
Confidence 0 00 0 000111223444444332111 11112 35789999999844 3 3467778888
Q ss_pred CCcccceeeEe
Q psy16633 196 LPKLYQAILAS 206 (540)
Q Consensus 196 l~~~~q~il~S 206 (540)
++...++|++-
T Consensus 283 l~~~~rlIlvG 293 (586)
T TIGR01447 283 LPPNTKLILLG 293 (586)
T ss_pred cCCCCEEEEEC
Confidence 88888888764
No 185
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.65 E-value=0.00062 Score=76.10 Aligned_cols=128 Identities=20% Similarity=0.195 Sum_probs=79.2
Q ss_pred HHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHH
Q psy16633 34 AKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQE 113 (540)
Q Consensus 34 ~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~ 113 (540)
...++ .+++-|++|+..+..++-+++.++.|+|||.+ +-.++..+... .....+++++||-.-|..+.+..
T Consensus 318 ~~~~~-~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~-l~~i~~~~~~~-----~~~~~v~l~ApTg~AA~~L~e~~-- 388 (720)
T TIGR01448 318 KKLRK-GLSEEQKQALDTAIQHKVVILTGGPGTGKTTI-TRAIIELAEEL-----GGLLPVGLAAPTGRAAKRLGEVT-- 388 (720)
T ss_pred HhcCC-CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHH-HHHHHHHHHHc-----CCCceEEEEeCchHHHHHHHHhc--
Confidence 33565 79999999999999888999999999999963 33334433221 11267888999987765443321
Q ss_pred HHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhc-----CcCCccCCccEEEEcCccccccCCcHHH
Q psy16633 114 LTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKA-----KTLDLKSSLEIVIIDEADLVFSFGYEDD 188 (540)
Q Consensus 114 l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~-----~~~~~~~~l~~lViDEah~l~~~~~~~~ 188 (540)
+ .. -.|-.+++..... ..... ...++||||||+++.. ..
T Consensus 389 -----g--~~------------------------a~Tih~lL~~~~~~~~~~~~~~~-~~~~llIvDEaSMvd~----~~ 432 (720)
T TIGR01448 389 -----G--LT------------------------ASTIHRLLGYGPDTFRHNHLEDP-IDCDLLIVDESSMMDT----WL 432 (720)
T ss_pred -----C--Cc------------------------cccHHHHhhccCCccchhhhhcc-ccCCEEEEeccccCCH----HH
Confidence 0 00 0111121111000 00011 4578999999996532 35
Q ss_pred HHHHHHhCCcccceeeEe
Q psy16633 189 MKAVLKFLPKLYQAILAS 206 (540)
Q Consensus 189 l~~i~~~l~~~~q~il~S 206 (540)
+..++..++...+++++-
T Consensus 433 ~~~Ll~~~~~~~rlilvG 450 (720)
T TIGR01448 433 ALSLLAALPDHARLLLVG 450 (720)
T ss_pred HHHHHHhCCCCCEEEEEC
Confidence 667777888888888764
No 186
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.63 E-value=5.9e-05 Score=68.59 Aligned_cols=107 Identities=21% Similarity=0.277 Sum_probs=70.5
Q ss_pred cCCcEEEEecChhhHHHHHHHHHhCCC--ceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccccccccc
Q psy16633 265 VQGKTIIFVNTVDKCYKLKLYLEQFKI--STCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRK 342 (540)
Q Consensus 265 ~~~k~IIF~~s~~~~~~l~~~L~~~~~--~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~ 342 (540)
.++.+|||++|....+.+...+...+. ...++.. ....+..+++.|.++.-.||+|+.-+
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g---------------- 69 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGG---------------- 69 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTS----------------
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecc----------------
Confidence 468999999999999999998876532 1122222 24577899999999999999999522
Q ss_pred cCccccccccCCCCC--cCEEEeCCCCCC-c-----------------------------ccchhccccccCCCCCceEE
Q psy16633 343 RDKESGVSRGIDFQF--VSNVINFDFPLD-I-----------------------------QCYIHRAGRTARGKNQGTAL 390 (540)
Q Consensus 343 ~~~~~~~~~GiD~~~--v~~Vi~~d~p~s-~-----------------------------~~yiqr~GRagR~g~~g~~i 390 (540)
.+++|||+++ +++||...+|.. + ....|.+||+-|..++--++
T Consensus 70 -----~~~EGiD~~~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i 144 (167)
T PF13307_consen 70 -----SFSEGIDFPGDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVI 144 (167)
T ss_dssp -----CCGSSS--ECESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEE
T ss_pred -----cEEEeecCCCchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEE
Confidence 4899999996 667998887731 1 11148899999987764455
Q ss_pred EEec
Q psy16633 391 SFVS 394 (540)
Q Consensus 391 ~~~~ 394 (540)
.+++
T Consensus 145 ~llD 148 (167)
T PF13307_consen 145 ILLD 148 (167)
T ss_dssp EEES
T ss_pred EEEc
Confidence 5554
No 187
>KOG0391|consensus
Probab=97.59 E-value=0.00026 Score=78.56 Aligned_cols=154 Identities=14% Similarity=0.161 Sum_probs=102.5
Q ss_pred CChHHHHHHHHHHhc----CCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHH
Q psy16633 40 EPTLIQERAIPLILQ----NKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELT 115 (540)
Q Consensus 40 ~pt~~Q~~ai~~il~----gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~ 115 (540)
.++.+|..-+..+.. +-|.|+.-..|-|||. -.|.++.++...+ .+-+--||+|||-.+ ..|.-.|++++
T Consensus 615 qLReYQkiGLdWLatLYeknlNGILADEmGLGKTI-QtISllAhLACee----gnWGPHLIVVpTsvi-LnWEMElKRwc 688 (1958)
T KOG0391|consen 615 QLREYQKIGLDWLATLYEKNLNGILADEMGLGKTI-QTISLLAHLACEE----GNWGPHLIVVPTSVI-LNWEMELKRWC 688 (1958)
T ss_pred HHHHHHHhhHHHHHHHHHhcccceehhhhcccchh-HHHHHHHHHHhcc----cCCCCceEEeechhh-hhhhHHHhhhC
Confidence 467888888876643 3467888999999997 5777888876643 233446888999765 45677788776
Q ss_pred hhcCCCceEEEeecCcccccchhh--h-hCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCCcHHHHHHH
Q psy16633 116 MKCSRDVKCVDISEQVDVSVQEPL--L-VERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAV 192 (540)
Q Consensus 116 ~~~~~~i~~~~~~~~~~~~~~~~~--l-~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i 192 (540)
. ++.+...+|.......++. . .+..+|.|+++..++.-+..- .- .++.|+|+||||.+-.|. ...|..+
T Consensus 689 P----glKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~AF--kr-krWqyLvLDEaqnIKnfk-sqrWQAl 760 (1958)
T KOG0391|consen 689 P----GLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTAF--KR-KRWQYLVLDEAQNIKNFK-SQRWQAL 760 (1958)
T ss_pred C----cceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHHH--Hh-hccceeehhhhhhhcchh-HHHHHHH
Confidence 4 5677777775432222111 1 123568888877776654432 11 678999999999998763 4556666
Q ss_pred HHhCCcccceeeEeeec
Q psy16633 193 LKFLPKLYQAILASATL 209 (540)
Q Consensus 193 ~~~l~~~~q~il~SATl 209 (540)
+..-. .+-++++.|+
T Consensus 761 lnfns--qrRLLLtgTP 775 (1958)
T KOG0391|consen 761 LNFNS--QRRLLLTGTP 775 (1958)
T ss_pred hccch--hheeeecCCc
Confidence 65443 4567777775
No 188
>KOG0391|consensus
Probab=97.53 E-value=0.00063 Score=75.69 Aligned_cols=124 Identities=18% Similarity=0.197 Sum_probs=94.7
Q ss_pred ccHHHHHHHHHH-hcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcC--CccEEEeCCCC
Q psy16633 250 DEKATILYTLLK-LNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQG--LYDVIIASDEK 326 (540)
Q Consensus 250 ~~k~~~l~~ll~-~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g--~~~iLIaT~~~ 326 (540)
.-|+..|..+++ +...+.++|||+.-.....-|-.||.-.|+-..-+.|....++|...+++||.. .+..|++|-
T Consensus 1259 cGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTr-- 1336 (1958)
T KOG0391|consen 1259 CGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTR-- 1336 (1958)
T ss_pred cchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEecc--
Confidence 345555555544 234567999999999999999999999999999999999999999999999975 466777887
Q ss_pred ccCCcccccccccccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCC--CceEEEEeccc
Q psy16633 327 ALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKN--QGTALSFVSLR 396 (540)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~--~g~~i~~~~~~ 396 (540)
.-+.|||+.+.+.||.||-.+++.-=.|.--|+-|.|+ +-..+-|++..
T Consensus 1337 ---------------------SggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~ 1387 (1958)
T KOG0391|consen 1337 ---------------------SGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISER 1387 (1958)
T ss_pred ---------------------CCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccc
Confidence 78899999999999999998886554444444444443 33445555543
No 189
>KOG1016|consensus
Probab=97.52 E-value=0.0019 Score=69.18 Aligned_cols=106 Identities=20% Similarity=0.187 Sum_probs=84.8
Q ss_pred CCcEEEEecChhhHHHHHHHHHhCCC------------------ceEEeCCCCCHHHHHHHHHHHhcCC---ccEEEeCC
Q psy16633 266 QGKTIIFVNTVDKCYKLKLYLEQFKI------------------STCVLNSELPAKARCHAVYQFNQGL---YDVIIASD 324 (540)
Q Consensus 266 ~~k~IIF~~s~~~~~~l~~~L~~~~~------------------~~~~l~~~l~~~~r~~i~~~F~~g~---~~iLIaT~ 324 (540)
+.++|||..+......+..+|.+..+ .-.-+.|..+...|+..+.+||..- .-++++|.
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 34889999999888888888876533 2234667788899999999998742 35788888
Q ss_pred CCccCCcccccccccccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEEec
Q psy16633 325 EKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVS 394 (540)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~ 394 (540)
+-.-||++-..+-++.||..+++.-=.|.+.|+-|.|+..-|+++-.
T Consensus 799 -----------------------ag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRl 845 (1387)
T KOG1016|consen 799 -----------------------AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRL 845 (1387)
T ss_pred -----------------------cccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEee
Confidence 77799999888888889999999999999999999998766665543
No 190
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.50 E-value=0.0013 Score=74.95 Aligned_cols=125 Identities=18% Similarity=0.140 Sum_probs=76.5
Q ss_pred HCCCCCChHHHHHHHHHHhcCCc-EEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHH
Q psy16633 35 KLGWLEPTLIQERAIPLILQNKD-VLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQE 113 (540)
Q Consensus 35 ~~g~~~pt~~Q~~ai~~il~gkd-~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~ 113 (540)
..|+ .+++-|++|+..++.+++ +++.++.|+|||.+ +-.+..++. ..+.+++.+.||---+..+.+
T Consensus 342 ~~g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~--l~~~~~~~e------~~G~~V~~~ApTGkAA~~L~e---- 408 (988)
T PRK13889 342 ARGL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM--LGVAREAWE------AAGYEVRGAALSGIAAENLEG---- 408 (988)
T ss_pred hcCC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH--HHHHHHHHH------HcCCeEEEecCcHHHHHHHhh----
Confidence 3566 699999999999998765 78999999999974 333333333 357889999999765543322
Q ss_pred HHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCCcHHHHHHHH
Q psy16633 114 LTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVL 193 (540)
Q Consensus 114 l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~ 193 (540)
.. ++. -.|..+++..+..+...+ ...++|||||+-++... .+..++
T Consensus 409 ---~t--Gi~------------------------a~TI~sll~~~~~~~~~l-~~~~vlIVDEASMv~~~----~m~~LL 454 (988)
T PRK13889 409 ---GS--GIA------------------------SRTIASLEHGWGQGRDLL-TSRDVLVIDEAGMVGTR----QLERVL 454 (988)
T ss_pred ---cc--Ccc------------------------hhhHHHHHhhhccccccc-ccCcEEEEECcccCCHH----HHHHHH
Confidence 11 110 013333322222222223 56789999999955433 444555
Q ss_pred HhC-CcccceeeEe
Q psy16633 194 KFL-PKLYQAILAS 206 (540)
Q Consensus 194 ~~l-~~~~q~il~S 206 (540)
... +...++|++-
T Consensus 455 ~~a~~~garvVLVG 468 (988)
T PRK13889 455 SHAADAGAKVVLVG 468 (988)
T ss_pred HhhhhCCCEEEEEC
Confidence 433 3456666654
No 191
>KOG1132|consensus
Probab=97.49 E-value=0.00069 Score=73.81 Aligned_cols=139 Identities=19% Similarity=0.219 Sum_probs=85.6
Q ss_pred CChHHHHHHHHHHhc----CCcEEEEcCCCchHHHHHHHHHH---HHHHhh---------c-------cc---------c
Q psy16633 40 EPTLIQERAIPLILQ----NKDVLVRARTGSGKTGAFAIPMI---QKIINL---------K-------QT---------A 87 (540)
Q Consensus 40 ~pt~~Q~~ai~~il~----gkd~li~a~TGsGKT~a~~ipil---~~l~~~---------~-------~~---------~ 87 (540)
+|++.|...+..+++ ..+.++.+|||+|||++.+-..| +.+... + .. .
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 688999877666654 57899999999999987554443 333211 1 00 0
Q ss_pred cC------CCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCccc----------------------------
Q psy16633 88 QV------QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDV---------------------------- 133 (540)
Q Consensus 88 ~~------~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~---------------------------- 133 (540)
.. ..+++.|-.-|-.-..|+.+.+++..-. +....+.+....
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~----vkmtVLgSReq~Cinpev~k~~~~~~~~~~C~k~~~~~~C 176 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYR----VKMTVLGSREQLCINPEVKKLEGNALQNHVCKKLVKSRSC 176 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhcCCC----CceEEeecchhhccCHHHhhhhcchhhhhHHHhhcccccc
Confidence 01 2467788888887788888887765421 111111110000
Q ss_pred ---------cc---------------------------chhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCc
Q psy16633 134 ---------SV---------------------------QEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEA 177 (540)
Q Consensus 134 ---------~~---------------------------~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEa 177 (540)
.. ..+.+...++|++|-+..|++-.-++...+.-.-++||+|||
T Consensus 177 ~f~~~~~~~sl~~~l~~~i~DIEDLVk~Gk~~~~CPYfaSR~l~edAdIIF~PYnYLiDp~iR~~~~v~LknsIVIfDEA 256 (945)
T KOG1132|consen 177 HFYKIVEEKSLQPRLHDEIFDIEDLVKIGKKSRGCPYFASRELKEDADIIFCPYNYLIDPKIRRSHKVDLKNSIVIFDEA 256 (945)
T ss_pred cccccccccccccccCCCcccHHHHHHhCccCcCCcchhhhhhcccCcEEEechhhhcCHhhhccccccccccEEEEecc
Confidence 00 012234568999999999998776665333235578999999
Q ss_pred ccccc
Q psy16633 178 DLVFS 182 (540)
Q Consensus 178 h~l~~ 182 (540)
|.|-+
T Consensus 257 HNiEd 261 (945)
T KOG1132|consen 257 HNIED 261 (945)
T ss_pred ccHHH
Confidence 98653
No 192
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.45 E-value=0.002 Score=72.42 Aligned_cols=74 Identities=14% Similarity=0.103 Sum_probs=51.4
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHhcC-CcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHH
Q psy16633 25 LFCIPLQAIAKLGWLEPTLIQERAIPLILQN-KDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKEL 103 (540)
Q Consensus 25 L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~g-kd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~L 103 (540)
+++..+......++ .+++-|+.|+..++.+ +-+++.+++|+|||.. +-.+..++. ..+.++++++||---
T Consensus 338 ~~~~~~~~~l~~~~-~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtl--l~~i~~~~~------~~g~~V~~~ApTg~A 408 (744)
T TIGR02768 338 VSPPIVDAAIDQHY-RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTM--LKAAREAWE------AAGYRVIGAALSGKA 408 (744)
T ss_pred CCHHHHHHHHhccC-CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHH--HHHHHHHHH------hCCCeEEEEeCcHHH
Confidence 44444444433455 6899999999999885 5689999999999963 333333333 257889999999765
Q ss_pred HHHH
Q psy16633 104 CNQL 107 (540)
Q Consensus 104 a~q~ 107 (540)
+..+
T Consensus 409 a~~L 412 (744)
T TIGR02768 409 AEGL 412 (744)
T ss_pred HHHH
Confidence 5443
No 193
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.38 E-value=0.001 Score=72.28 Aligned_cols=148 Identities=15% Similarity=0.166 Sum_probs=81.6
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhc-C---CCceEEEeecCcc
Q psy16633 57 DVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKC-S---RDVKCVDISEQVD 132 (540)
Q Consensus 57 d~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~-~---~~i~~~~~~~~~~ 132 (540)
++=|.+.||+|||.+|+=-|...= + .-.-.+.||+|||.+.-.-+........... . ...+.-...-+..
T Consensus 76 NiDI~METGTGKTy~YlrtmfeLh-k-----~YG~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~~ 149 (985)
T COG3587 76 NIDILMETGTGKTYTYLRTMFELH-K-----KYGLFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDED 149 (985)
T ss_pred eeeEEEecCCCceeeHHHHHHHHH-H-----HhCceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeechH
Confidence 577999999999999987665432 1 1345789999999998776555444332222 1 0112211111111
Q ss_pred cccchhhhhCCCCEEEEChHHHHH------HHhcCcCCc-------------cC-CccEEEEcCccccccCCcHHHHHHH
Q psy16633 133 VSVQEPLLVERPDIVVATPARALA------HLKAKTLDL-------------KS-SLEIVIIDEADLVFSFGYEDDMKAV 192 (540)
Q Consensus 133 ~~~~~~~l~~~~~Ivv~Tp~~l~~------~l~~~~~~~-------------~~-~l~~lViDEah~l~~~~~~~~l~~i 192 (540)
.....-.....+.+++.|...+.. ++.+..... .. .--++|+||-|++... ...+..+
T Consensus 150 ~~~~~~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rPIvIvDEPh~f~~~--~k~~~~i 227 (985)
T COG3587 150 IEKFKFKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRPIVIVDEPHRFLGD--DKTYGAI 227 (985)
T ss_pred HHHHhhccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCCEEEecChhhcccc--hHHHHHH
Confidence 111111122456777777554422 111111110 01 1137999999998774 3445555
Q ss_pred HHhCCcccceeeEeeeccHHHH
Q psy16633 193 LKFLPKLYQAILASATLSEDVL 214 (540)
Q Consensus 193 ~~~l~~~~q~il~SATl~~~~~ 214 (540)
....|- -++=+|||.++...
T Consensus 228 ~~l~pl--~ilRfgATfkd~y~ 247 (985)
T COG3587 228 KQLNPL--LILRFGATFKDEYN 247 (985)
T ss_pred HhhCce--EEEEecccchhhhc
Confidence 555552 35669999987654
No 194
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.35 E-value=0.00064 Score=68.25 Aligned_cols=124 Identities=22% Similarity=0.198 Sum_probs=75.3
Q ss_pred ChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcCC
Q psy16633 41 PTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSR 120 (540)
Q Consensus 41 pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~ 120 (540)
+|+-|.++|.. ..+.++|.|..|||||.+.+--++..+... .....++|++++|+..+.++.+.+.........
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~----~~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~ 74 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEG----GVPPERILVLTFTNAAAQEMRERIRELLEEEQQ 74 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTS----SSTGGGEEEEESSHHHHHHHHHHHHHHHHHCCH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccc----cCChHHheecccCHHHHHHHHHHHHHhcCcccc
Confidence 47889999987 678899999999999997655555444332 145678999999999999999999887654310
Q ss_pred CceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhc-CcCCccCCccEEEEcCcc
Q psy16633 121 DVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKA-KTLDLKSSLEIVIIDEAD 178 (540)
Q Consensus 121 ~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~-~~~~~~~~l~~lViDEah 178 (540)
. ................+.|+|-..+...+-+ ......-.-.+-++|+..
T Consensus 75 ~--------~~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 75 E--------SSDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp C--------CTT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred c--------ccccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 0 0000011112223456889998887664432 211110122345666665
No 195
>PRK06526 transposase; Provisional
Probab=97.30 E-value=0.0054 Score=59.64 Aligned_cols=66 Identities=9% Similarity=0.026 Sum_probs=36.3
Q ss_pred CCccEEEEcCccccccCCc-HHHHHHHHHhCCcccceeeEeeeccHHHHH----------HHHHhcCCCeEEEecCC
Q psy16633 167 SSLEIVIIDEADLVFSFGY-EDDMKAVLKFLPKLYQAILASATLSEDVLS----------LKHLILRNPVILKLEEP 232 (540)
Q Consensus 167 ~~l~~lViDEah~l~~~~~-~~~l~~i~~~l~~~~q~il~SATl~~~~~~----------~~~~~l~~p~~i~~~~~ 232 (540)
...++|||||+|....... ...+..++........+|+.|...+..... +.....+...++.+...
T Consensus 158 ~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~~~w~~~~~d~~~a~ai~dRl~~~~~~i~~~g~ 234 (254)
T PRK06526 158 GRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFGRWGEVFGDDVVAAAMIDRLVHHAEVISLKGD 234 (254)
T ss_pred ccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCHHHHHHHcCChHHHHHHHHHHhcCceEEeecCC
Confidence 4578999999996543222 233445544322234577777776554322 23455566666665543
No 196
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.24 E-value=0.006 Score=70.21 Aligned_cols=137 Identities=16% Similarity=0.104 Sum_probs=82.4
Q ss_pred CCCCHHHHHHHHHCCCCCChHHHHHHHHHHhc-CCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcH
Q psy16633 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQ-NKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSK 101 (540)
Q Consensus 23 ~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~-gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~ 101 (540)
.++++..+.+....++ .+++-|.+|+..+.. ++-+++.++.|+|||.+ +-.+..++. ..+.+++.+.||-
T Consensus 365 ~~v~~~~l~a~~~~~~-~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~--l~~~~~~~e------~~G~~V~g~ApTg 435 (1102)
T PRK13826 365 HGVREAVLAATFARHA-RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM--MKAAREAWE------AAGYRVVGGALAG 435 (1102)
T ss_pred CCCCHHHHHHHHhcCC-CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH--HHHHHHHHH------HcCCeEEEEcCcH
Confidence 3456666666555565 799999999998865 45589999999999963 333334433 3578899999997
Q ss_pred HHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccc
Q psy16633 102 ELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVF 181 (540)
Q Consensus 102 ~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~ 181 (540)
.-+..+.+ . . ++.. .|-.+++.....+...+ ..-++||||||-++.
T Consensus 436 kAA~~L~e----~---~--Gi~a------------------------~TIas~ll~~~~~~~~l-~~~~vlVIDEAsMv~ 481 (1102)
T PRK13826 436 KAAEGLEK----E---A--GIQS------------------------RTLSSWELRWNQGRDQL-DNKTVFVLDEAGMVA 481 (1102)
T ss_pred HHHHHHHH----h---h--CCCe------------------------eeHHHHHhhhccCccCC-CCCcEEEEECcccCC
Confidence 65544322 1 1 1111 12222211111112222 567799999999553
Q ss_pred cCCcHHHHHHHHHhCC-cccceeeEe
Q psy16633 182 SFGYEDDMKAVLKFLP-KLYQAILAS 206 (540)
Q Consensus 182 ~~~~~~~l~~i~~~l~-~~~q~il~S 206 (540)
. ..+..++...+ ...+++++-
T Consensus 482 ~----~~m~~Ll~~~~~~garvVLVG 503 (1102)
T PRK13826 482 S----RQMALFVEAVTRAGAKLVLVG 503 (1102)
T ss_pred H----HHHHHHHHHHHhcCCEEEEEC
Confidence 3 34555666554 356666654
No 197
>PRK08181 transposase; Validated
Probab=97.21 E-value=0.012 Score=57.51 Aligned_cols=119 Identities=14% Similarity=0.171 Sum_probs=63.2
Q ss_pred HHHHHHHH----HHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhc
Q psy16633 43 LIQERAIP----LILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKC 118 (540)
Q Consensus 43 ~~Q~~ai~----~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~ 118 (540)
..|..++. .+-+++++++.||+|+|||..+ ..+...+.. .+..++++ +..+|..++.....
T Consensus 90 ~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa-~Aia~~a~~-------~g~~v~f~-~~~~L~~~l~~a~~------ 154 (269)
T PRK08181 90 KAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLA-AAIGLALIE-------NGWRVLFT-RTTDLVQKLQVARR------ 154 (269)
T ss_pred HHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHH-HHHHHHHHH-------cCCceeee-eHHHHHHHHHHHHh------
Confidence 44444442 2346789999999999999632 333344332 35566554 44555544322100
Q ss_pred CCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCCc-HHHHHHHHHhCC
Q psy16633 119 SRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGY-EDDMKAVLKFLP 197 (540)
Q Consensus 119 ~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~-~~~l~~i~~~l~ 197 (540)
+ .+...++..+ ...++|||||.+....... ...+..++....
T Consensus 155 -----------~------------------~~~~~~l~~l--------~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~ 197 (269)
T PRK08181 155 -----------E------------------LQLESAIAKL--------DKFDLLILDDLAYVTKDQAETSVLFELISARY 197 (269)
T ss_pred -----------C------------------CcHHHHHHHH--------hcCCEEEEeccccccCCHHHHHHHHHHHHHHH
Confidence 0 0222222221 5678999999996644322 234555555433
Q ss_pred cccceeeEeeeccHHH
Q psy16633 198 KLYQAILASATLSEDV 213 (540)
Q Consensus 198 ~~~q~il~SATl~~~~ 213 (540)
....+|+.|-..+...
T Consensus 198 ~~~s~IiTSN~~~~~w 213 (269)
T PRK08181 198 ERRSILITANQPFGEW 213 (269)
T ss_pred hCCCEEEEcCCCHHHH
Confidence 3345666665554443
No 198
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.19 E-value=0.0017 Score=56.10 Aligned_cols=17 Identities=29% Similarity=0.483 Sum_probs=12.0
Q ss_pred CCcEEEEcCCCchHHHH
Q psy16633 55 NKDVLVRARTGSGKTGA 71 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a 71 (540)
++.++|.|++|+|||.+
T Consensus 4 ~~~~~i~G~~G~GKT~~ 20 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTL 20 (131)
T ss_dssp ---EEEEE-TTSSHHHH
T ss_pred CcccEEEcCCCCCHHHH
Confidence 45689999999999974
No 199
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.13 E-value=0.0016 Score=64.50 Aligned_cols=147 Identities=16% Similarity=0.199 Sum_probs=82.5
Q ss_pred CCCCCChHHHHHHHHHHhcCC--cEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHH
Q psy16633 36 LGWLEPTLIQERAIPLILQNK--DVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQE 113 (540)
Q Consensus 36 ~g~~~pt~~Q~~ai~~il~gk--d~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~ 113 (540)
.|+.--...|.-|+.+++.-. =+.+.++.|||||+.++.+.+...+.. ....++|+.=|+..+.+.+
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~-----~~y~KiiVtRp~vpvG~dI------ 292 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLER-----KRYRKIIVTRPTVPVGEDI------ 292 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHH-----hhhceEEEecCCcCccccc------
Confidence 366434456777888888753 378899999999999888888887764 3466778877776554222
Q ss_pred HHhhcCCCceEEEeecCcccccchhhhhCCCCEEE----EChHHHHHHHhcCcCCc-----c--C--CccEEEEcCcccc
Q psy16633 114 LTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV----ATPARALAHLKAKTLDL-----K--S--SLEIVIIDEADLV 180 (540)
Q Consensus 114 l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv----~Tp~~l~~~l~~~~~~~-----~--~--~l~~lViDEah~l 180 (540)
...--+.......|...+..+-..+. ++-+.+-..+....+.+ . + .-.++|||||+.+
T Consensus 293 ---------GfLPG~eEeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNL 363 (436)
T COG1875 293 ---------GFLPGTEEEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNL 363 (436)
T ss_pred ---------CcCCCchhhhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhcc
Confidence 00000000011111110000000000 11223333332222211 0 1 2368999999966
Q ss_pred ccCCcHHHHHHHHHhCCcccceeeEe
Q psy16633 181 FSFGYEDDMKAVLKFLPKLYQAILAS 206 (540)
Q Consensus 181 ~~~~~~~~l~~i~~~l~~~~q~il~S 206 (540)
. ...++.|+.+..+..+++++.
T Consensus 364 T----pheikTiltR~G~GsKIVl~g 385 (436)
T COG1875 364 T----PHELKTILTRAGEGSKIVLTG 385 (436)
T ss_pred C----HHHHHHHHHhccCCCEEEEcC
Confidence 4 357899999998888887764
No 200
>KOG1805|consensus
Probab=97.08 E-value=0.0018 Score=71.37 Aligned_cols=137 Identities=18% Similarity=0.194 Sum_probs=85.9
Q ss_pred CCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCc-EEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHH
Q psy16633 24 TLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKD-VLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKE 102 (540)
Q Consensus 24 ~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~gkd-~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~ 102 (540)
.++|.+.+. -+..+..-|++|+-.++..+| .+|.|-+|+|||.+. ..++..|. ..+.+||..+=|..
T Consensus 657 ~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI-~~LIkiL~-------~~gkkVLLtsyThs 724 (1100)
T KOG1805|consen 657 VLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTI-SLLIKILV-------ALGKKVLLTSYTHS 724 (1100)
T ss_pred ccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhH-HHHHHHHH-------HcCCeEEEEehhhH
Confidence 344554443 345678899999999999887 899999999999742 33333333 25888999998887
Q ss_pred HHHHHHHHHHHHHhhcCCCceEEEeecCcccccc-----------------hhhhhCCCCEEEEChHHHHHHHhcCcCCc
Q psy16633 103 LCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQ-----------------EPLLVERPDIVVATPARALAHLKAKTLDL 165 (540)
Q Consensus 103 La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~-----------------~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~ 165 (540)
-+..+.-.++.+.. ...-+..+.....+ .....+.+.||.||---+-+.+. .
T Consensus 725 AVDNILiKL~~~~i------~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf-----~ 793 (1100)
T KOG1805|consen 725 AVDNILIKLKGFGI------YILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLF-----V 793 (1100)
T ss_pred HHHHHHHHHhccCc------ceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhh-----h
Confidence 77766666655432 22222222111111 11233578899888433322222 2
Q ss_pred cCCccEEEEcCccccccC
Q psy16633 166 KSSLEIVIIDEADLVFSF 183 (540)
Q Consensus 166 ~~~l~~lViDEah~l~~~ 183 (540)
.+.+++.|||||-.+...
T Consensus 794 ~R~FD~cIiDEASQI~lP 811 (1100)
T KOG1805|consen 794 NRQFDYCIIDEASQILLP 811 (1100)
T ss_pred ccccCEEEEccccccccc
Confidence 277999999999976543
No 201
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=96.96 E-value=0.0027 Score=70.04 Aligned_cols=66 Identities=21% Similarity=0.398 Sum_probs=52.9
Q ss_pred CChHHHHHHHHHHhcC-CcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHH
Q psy16633 40 EPTLIQERAIPLILQN-KDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQE 113 (540)
Q Consensus 40 ~pt~~Q~~ai~~il~g-kd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~ 113 (540)
.+++.|..|+..++.. ..++|.||+|+|||.+. ..++..+.. .+.++|+++||..-+.++.+.+..
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~-~~ii~~~~~-------~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTL-VELIRQLVK-------RGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHH-HHHHHHHHH-------cCCCEEEEcCcHHHHHHHHHHHHh
Confidence 4689999999999886 56889999999999754 444444433 456999999999999998888775
No 202
>PRK04296 thymidine kinase; Provisional
Probab=96.88 E-value=0.0023 Score=59.50 Aligned_cols=37 Identities=22% Similarity=0.232 Sum_probs=25.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcC
Q psy16633 55 NKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSP 99 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~P 99 (540)
|.-.++.+|+|+|||.. ++-++..+. ..+.+++++-|
T Consensus 2 g~i~litG~~GsGKTT~-~l~~~~~~~-------~~g~~v~i~k~ 38 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTE-LLQRAYNYE-------ERGMKVLVFKP 38 (190)
T ss_pred cEEEEEECCCCCHHHHH-HHHHHHHHH-------HcCCeEEEEec
Confidence 34478999999999974 344444432 24678888866
No 203
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.87 E-value=0.012 Score=51.16 Aligned_cols=16 Identities=38% Similarity=0.611 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCchHHH
Q psy16633 55 NKDVLVRARTGSGKTG 70 (540)
Q Consensus 55 gkd~li~a~TGsGKT~ 70 (540)
++.+++.||+|+|||.
T Consensus 19 ~~~v~i~G~~G~GKT~ 34 (151)
T cd00009 19 PKNLLLYGPPGTGKTT 34 (151)
T ss_pred CCeEEEECCCCCCHHH
Confidence 5789999999999996
No 204
>PRK08727 hypothetical protein; Validated
Probab=96.79 E-value=0.018 Score=55.41 Aligned_cols=47 Identities=6% Similarity=0.025 Sum_probs=25.7
Q ss_pred CCccEEEEcCccccccCC-cHHHHHHHHHhCCc-ccceeeEeeeccHHH
Q psy16633 167 SSLEIVIIDEADLVFSFG-YEDDMKAVLKFLPK-LYQAILASATLSEDV 213 (540)
Q Consensus 167 ~~l~~lViDEah~l~~~~-~~~~l~~i~~~l~~-~~q~il~SATl~~~~ 213 (540)
.+.++|||||+|.+.... ....+..+...... ..++|+.|-..|...
T Consensus 92 ~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l 140 (233)
T PRK08727 92 EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGL 140 (233)
T ss_pred hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhh
Confidence 456789999999776543 22334444443322 334555555444443
No 205
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=96.73 E-value=0.0028 Score=60.83 Aligned_cols=86 Identities=26% Similarity=0.333 Sum_probs=64.5
Q ss_pred CCCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecC-cccccchhhhh-CCCCEEEEChHHHHHHHhcCcCCcc
Q psy16633 89 VQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQ-VDVSVQEPLLV-ERPDIVVATPARALAHLKAKTLDLK 166 (540)
Q Consensus 89 ~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~-~~~~~~~~~l~-~~~~Ivv~Tp~~l~~~l~~~~~~~~ 166 (540)
...+.+||++.+---|..+.+.++.+-. .+..+..+.+. .....+...+. ...+|.||||+|+..++..+.+.+
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~~---k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l- 199 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFKG---KDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSL- 199 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhcc---CCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCc-
Confidence 4568899999988778887777777631 12333333333 25566666665 478999999999999999999988
Q ss_pred CCccEEEEcCcc
Q psy16633 167 SSLEIVIIDEAD 178 (540)
Q Consensus 167 ~~l~~lViDEah 178 (540)
+++.+||||--|
T Consensus 200 ~~l~~ivlD~s~ 211 (252)
T PF14617_consen 200 SNLKRIVLDWSY 211 (252)
T ss_pred ccCeEEEEcCCc
Confidence 999999999765
No 206
>PHA02533 17 large terminase protein; Provisional
Probab=96.66 E-value=0.037 Score=59.59 Aligned_cols=150 Identities=12% Similarity=0.091 Sum_probs=87.5
Q ss_pred CChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcC
Q psy16633 40 EPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCS 119 (540)
Q Consensus 40 ~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~ 119 (540)
.|.|+|...+..+..++-.++..+=..|||.+....++...+. ..+..+++++|+..-|..+++.++......+
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~------~~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P 132 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCF------NKDKNVGILAHKASMAAEVLDRTKQAIELLP 132 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHh------CCCCEEEEEeCCHHHHHHHHHHHHHHHHhCH
Confidence 4789999999877666667788888999998766544444332 2466999999999999999988887665432
Q ss_pred CCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCCcHHHHHHHHHhCCc-
Q psy16633 120 RDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPK- 198 (540)
Q Consensus 120 ~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~- 198 (540)
.-......... ...-.+..+..|.+.|.. .+...- .+.+++++||+|.+.+ +.+.+..+...+..
T Consensus 133 ~l~~~~i~~~~----~~~I~l~NGS~I~~lss~-------~~t~rG-~~~~~liiDE~a~~~~--~~e~~~ai~p~lasg 198 (534)
T PHA02533 133 DFLQPGIVEWN----KGSIELENGSKIGAYASS-------PDAVRG-NSFAMIYIDECAFIPN--FIDFWLAIQPVISSG 198 (534)
T ss_pred HHhhcceeecC----ccEEEeCCCCEEEEEeCC-------CCccCC-CCCceEEEeccccCCC--HHHHHHHHHHHHHcC
Confidence 11111100000 001112245556555422 111111 4567899999996644 23344444444432
Q ss_pred -ccceeeEeeec
Q psy16633 199 -LYQAILASATL 209 (540)
Q Consensus 199 -~~q~il~SATl 209 (540)
..+++.+|.+.
T Consensus 199 ~~~r~iiiSTp~ 210 (534)
T PHA02533 199 RSSKIIITSTPN 210 (534)
T ss_pred CCceEEEEECCC
Confidence 23455555553
No 207
>PRK08116 hypothetical protein; Validated
Probab=96.62 E-value=0.02 Score=56.26 Aligned_cols=40 Identities=23% Similarity=0.335 Sum_probs=25.9
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHH
Q psy16633 57 DVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCN 105 (540)
Q Consensus 57 d~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~ 105 (540)
.+++.|++|+|||.. +.++.+.+.+ .+..++++ +..++..
T Consensus 116 gl~l~G~~GtGKThL-a~aia~~l~~-------~~~~v~~~-~~~~ll~ 155 (268)
T PRK08116 116 GLLLWGSVGTGKTYL-AACIANELIE-------KGVPVIFV-NFPQLLN 155 (268)
T ss_pred eEEEECCCCCCHHHH-HHHHHHHHHH-------cCCeEEEE-EHHHHHH
Confidence 499999999999974 4456666644 24455554 4445544
No 208
>PRK06921 hypothetical protein; Provisional
Probab=96.61 E-value=0.035 Score=54.46 Aligned_cols=45 Identities=16% Similarity=0.218 Sum_probs=28.1
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHH
Q psy16633 54 QNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQ 106 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q 106 (540)
.+..+++.|+||+|||.. +.++...+.. ..+..++++. ..++..+
T Consensus 116 ~~~~l~l~G~~G~GKThL-a~aia~~l~~------~~g~~v~y~~-~~~l~~~ 160 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHL-LTAAANELMR------KKGVPVLYFP-FVEGFGD 160 (266)
T ss_pred CCCeEEEECCCCCcHHHH-HHHHHHHHhh------hcCceEEEEE-HHHHHHH
Confidence 356799999999999963 3445555533 1155666654 4444443
No 209
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.57 E-value=0.019 Score=58.74 Aligned_cols=131 Identities=16% Similarity=0.113 Sum_probs=62.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccc
Q psy16633 55 NKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVS 134 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~ 134 (540)
|+.+++.+|||+|||.....-+...... ....++.+++ +...-.--.+.++.++...+ +.+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~------~G~~~V~lit-~D~~R~ga~EqL~~~a~~~g--v~~---------- 197 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMR------FGASKVALLT-TDSYRIGGHEQLRIFGKILG--VPV---------- 197 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHh------cCCCeEEEEe-cccccccHHHHHHHHHHHcC--Cce----------
Confidence 5679999999999998543322222211 1123444333 22221122355666655442 221
Q ss_pred cchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCC-cHHHHHHHHHhCCcccceeeEeeeccHHH
Q psy16633 135 VQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFG-YEDDMKAVLKFLPKLYQAILASATLSEDV 213 (540)
Q Consensus 135 ~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~-~~~~l~~i~~~l~~~~q~il~SATl~~~~ 213 (540)
..+.+++.+...+.. + .+.++|+||.+-+..... ..+.+..+.........++.+|||...+.
T Consensus 198 -----------~~~~~~~~l~~~l~~----l-~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~ 261 (374)
T PRK14722 198 -----------HAVKDGGDLQLALAE----L-RNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDT 261 (374)
T ss_pred -----------EecCCcccHHHHHHH----h-cCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHH
Confidence 223334333333332 1 456889999997332111 11222222222222334788899986543
Q ss_pred -HHHHHHh
Q psy16633 214 -LSLKHLI 220 (540)
Q Consensus 214 -~~~~~~~ 220 (540)
....+.+
T Consensus 262 l~evi~~f 269 (374)
T PRK14722 262 LNEVVQAY 269 (374)
T ss_pred HHHHHHHH
Confidence 3343433
No 210
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=96.51 E-value=0.011 Score=51.95 Aligned_cols=77 Identities=19% Similarity=0.301 Sum_probs=52.3
Q ss_pred EeCCCCCHHHHHHHHHHHhcCCc-cEEEeCCCCccCCcccccccccccccCccccccccCCCCC--cCEEEeCCCCC---
Q psy16633 295 VLNSELPAKARCHAVYQFNQGLY-DVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQF--VSNVINFDFPL--- 368 (540)
Q Consensus 295 ~l~~~l~~~~r~~i~~~F~~g~~-~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~--v~~Vi~~d~p~--- 368 (540)
++.-+....+...+++.|.+..- .||+++. .+++|||+++ +++||...+|.
T Consensus 26 i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~-----------------------~~~EGiD~~g~~~r~vii~glPfp~~ 82 (141)
T smart00492 26 LLVQGEDGKETGKLLEKYVEACENAILLATA-----------------------RFSEGVDFPGDYLRAVIIDGLPFPYP 82 (141)
T ss_pred EEEeCCChhHHHHHHHHHHHcCCCEEEEEcc-----------------------ceecceecCCCCeeEEEEEecCCCCC
Confidence 33434445456888889987543 7999998 8999999997 45788777662
Q ss_pred -C---------------------------cccchhccccccCCCCCceEEEEec
Q psy16633 369 -D---------------------------IQCYIHRAGRTARGKNQGTALSFVS 394 (540)
Q Consensus 369 -s---------------------------~~~yiqr~GRagR~g~~g~~i~~~~ 394 (540)
+ .....|.+||+-|..++--++.+++
T Consensus 83 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~l~D 136 (141)
T smart00492 83 DSPILKARLELLRDKGQIRPFDFVSLPDAMRTLAQCVGRLIRGANDYGVVVIAD 136 (141)
T ss_pred CCHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCccccCcCceEEEEEEe
Confidence 1 1222588899999876543444443
No 211
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.51 E-value=0.061 Score=51.86 Aligned_cols=48 Identities=15% Similarity=0.222 Sum_probs=28.7
Q ss_pred CCccEEEEcCccccccCCcHH-HHHHHHHh-CCcccceeeEeeeccHHHH
Q psy16633 167 SSLEIVIIDEADLVFSFGYED-DMKAVLKF-LPKLYQAILASATLSEDVL 214 (540)
Q Consensus 167 ~~l~~lViDEah~l~~~~~~~-~l~~i~~~-l~~~~q~il~SATl~~~~~ 214 (540)
...++|||||++......+.. .+..|+.. ......+++.|---+.++.
T Consensus 161 ~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~ 210 (244)
T PRK07952 161 SNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMT 210 (244)
T ss_pred ccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHH
Confidence 568899999999765444443 34445443 2334567766655444443
No 212
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.51 E-value=0.011 Score=60.98 Aligned_cols=59 Identities=20% Similarity=0.248 Sum_probs=44.7
Q ss_pred ChHHHHHHHHHH------hcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHH
Q psy16633 41 PTLIQERAIPLI------LQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQL 107 (540)
Q Consensus 41 pt~~Q~~ai~~i------l~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~ 107 (540)
+++-|++++..+ ..+..+++.++-|+|||. ++-.+...+. ..+..+++++||-.-|..+
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~--l~~~i~~~~~------~~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSF--LIKAIIDYLR------SRGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhH--HHHHHHHHhc------cccceEEEecchHHHHHhc
Confidence 567789998888 567889999999999995 5555554443 3567899999997766554
No 213
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=96.44 E-value=0.13 Score=55.85 Aligned_cols=151 Identities=19% Similarity=0.221 Sum_probs=85.4
Q ss_pred hHHHHHHHHHH---hcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhc
Q psy16633 42 TLIQERAIPLI---LQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKC 118 (540)
Q Consensus 42 t~~Q~~ai~~i---l~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~ 118 (540)
.|.=.+-|..+ .+.+-.++.+|=|.|||.+..+.+...+ . ..+.+++|.+|...-++++++.+.......
T Consensus 171 ~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La-~------f~Gi~IlvTAH~~~ts~evF~rv~~~le~l 243 (752)
T PHA03333 171 SPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMI-S------FLEIDIVVQAQRKTMCLTLYNRVETVVHAY 243 (752)
T ss_pred ChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHH-H------hcCCeEEEECCChhhHHHHHHHHHHHHHHh
Confidence 44333334444 3456789999999999987554444332 2 146899999999999999998888877643
Q ss_pred C------CCceEEEeecCcc-cccch-hhhh-CCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCCcHHHH
Q psy16633 119 S------RDVKCVDISEQVD-VSVQE-PLLV-ERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDM 189 (540)
Q Consensus 119 ~------~~i~~~~~~~~~~-~~~~~-~~l~-~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~~~~l 189 (540)
+ ..-.+....|+.. ..... .... +...|.+++-. .+...- ..++++|+|||..+.. +.+
T Consensus 244 g~~~~fp~~~~iv~vkgg~E~I~f~~p~gak~G~sti~F~Ars-------~~s~RG-~~~DLLIVDEAAfI~~----~~l 311 (752)
T PHA03333 244 QHKPWFPEEFKIVTLKGTDENLEYISDPAAKEGKTTAHFLASS-------PNAARG-QNPDLVIVDEAAFVNP----GAL 311 (752)
T ss_pred ccccccCCCceEEEeeCCeeEEEEecCcccccCcceeEEeccc-------CCCcCC-CCCCEEEEECcccCCH----HHH
Confidence 2 1111122222211 00000 0000 11344443321 112221 3568999999996654 445
Q ss_pred HHHHHhCC-cccceeeEeeeccH
Q psy16633 190 KAVLKFLP-KLYQAILASATLSE 211 (540)
Q Consensus 190 ~~i~~~l~-~~~q~il~SATl~~ 211 (540)
..++..+. ...+++++|.+-..
T Consensus 312 ~aIlP~l~~~~~k~IiISS~~~~ 334 (752)
T PHA03333 312 LSVLPLMAVKGTKQIHISSPVDA 334 (752)
T ss_pred HHHHHHHccCCCceEEEeCCCCc
Confidence 55555554 45677888877643
No 214
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.43 E-value=0.0067 Score=52.27 Aligned_cols=41 Identities=17% Similarity=0.201 Sum_probs=24.8
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHH
Q psy16633 55 NKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKEL 103 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~L 103 (540)
+..+++.+|+|+|||... ..++..+. .....++++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~-~~l~~~~~-------~~~~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLA-RALARELG-------PPGGGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHH-HHHHhccC-------CCCCCEEEECCEEcc
Confidence 467899999999999743 22332221 112356777666543
No 215
>PRK12377 putative replication protein; Provisional
Probab=96.40 E-value=0.032 Score=53.91 Aligned_cols=43 Identities=14% Similarity=0.359 Sum_probs=27.0
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHH
Q psy16633 56 KDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQL 107 (540)
Q Consensus 56 kd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~ 107 (540)
.++++.|++|+|||.. +.++...+.. .+..+++ ++..+|..++
T Consensus 102 ~~l~l~G~~GtGKThL-a~AIa~~l~~-------~g~~v~~-i~~~~l~~~l 144 (248)
T PRK12377 102 TNFVFSGKPGTGKNHL-AAAIGNRLLA-------KGRSVIV-VTVPDVMSRL 144 (248)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHHHH-------cCCCeEE-EEHHHHHHHH
Confidence 5799999999999963 4445555543 3444544 4445665544
No 216
>PRK09183 transposase/IS protein; Provisional
Probab=96.37 E-value=0.13 Score=50.26 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=17.3
Q ss_pred HhcCCcEEEEcCCCchHHHHH
Q psy16633 52 ILQNKDVLVRARTGSGKTGAF 72 (540)
Q Consensus 52 il~gkd~li~a~TGsGKT~a~ 72 (540)
+.+|.++++.||+|+|||...
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa 119 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLA 119 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHH
Confidence 345789999999999999643
No 217
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=96.36 E-value=0.0096 Score=52.38 Aligned_cols=68 Identities=22% Similarity=0.332 Sum_probs=48.1
Q ss_pred HHHHHHHHHhcCCc---cEEEeCCCCccCCcccccccccccccCcccc--ccccCCCCC--cCEEEeCCCCC----C---
Q psy16633 304 ARCHAVYQFNQGLY---DVIIASDEKALETPQINSTNNRKRKRDKESG--VSRGIDFQF--VSNVINFDFPL----D--- 369 (540)
Q Consensus 304 ~r~~i~~~F~~g~~---~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~--~~~GiD~~~--v~~Vi~~d~p~----s--- 369 (540)
+...+++.|++..- .||+++. . +++|||+++ +++||...+|. +
T Consensus 32 ~~~~~l~~f~~~~~~~g~iL~~v~-----------------------~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~ 88 (142)
T smart00491 32 ETEELLEKYSAACEARGALLLAVA-----------------------RGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPIL 88 (142)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEEe-----------------------CCeeecceecCCCccEEEEEEecCCCCCCCHHH
Confidence 44678888887544 6999997 6 999999987 56788877762 1
Q ss_pred ------------------------cccchhccccccCCCCCceEEEEec
Q psy16633 370 ------------------------IQCYIHRAGRTARGKNQGTALSFVS 394 (540)
Q Consensus 370 ------------------------~~~yiqr~GRagR~g~~g~~i~~~~ 394 (540)
.....|.+||.=|..++--++.+++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~Qa~GR~iR~~~D~g~i~l~D 137 (142)
T smart00491 89 RARLEYLDEKGGIRPFDEVYLFDAMRALAQAIGRAIRHKNDYGVVVLLD 137 (142)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhCccccCccceEEEEEEe
Confidence 1122488999999876644555554
No 218
>PRK05642 DNA replication initiation factor; Validated
Probab=96.27 E-value=0.024 Score=54.54 Aligned_cols=45 Identities=20% Similarity=0.308 Sum_probs=28.4
Q ss_pred CCccEEEEcCccccccC-CcHHHHHHHHHhCCcccceeeEeeeccH
Q psy16633 167 SSLEIVIIDEADLVFSF-GYEDDMKAVLKFLPKLYQAILASATLSE 211 (540)
Q Consensus 167 ~~l~~lViDEah~l~~~-~~~~~l~~i~~~l~~~~q~il~SATl~~ 211 (540)
.+.+++|||++|.+... .+...+..++..+......++++++.++
T Consensus 96 ~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 96 EQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred hhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 45678999999976443 3455677777665543344566666544
No 219
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.26 E-value=0.26 Score=61.19 Aligned_cols=228 Identities=14% Similarity=0.132 Sum_probs=117.7
Q ss_pred CChHHHHHHHHHHhcCC--cEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhh
Q psy16633 40 EPTLIQERAIPLILQNK--DVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMK 117 (540)
Q Consensus 40 ~pt~~Q~~ai~~il~gk--d~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~ 117 (540)
.+++-|++|+..++..+ -.++.++.|+|||. ++-.+-.+++ ..|.+++.++||-.-+..+.+.......
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt--~l~~l~~~~~------~~G~~V~~lAPTgrAA~~L~e~~g~~A~- 499 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTE--IAQLLLHLAS------EQGYEIQIITAGSLSAQELRQKIPRLAS- 499 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHH--HHHHHHHHHH------hcCCeEEEEeCCHHHHHHHHHHhcchhh-
Confidence 57899999999998864 48999999999996 3333334433 3578999999998766555443221100
Q ss_pred cCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCCcHHHHHHHHHhC-
Q psy16633 118 CSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFL- 196 (540)
Q Consensus 118 ~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~l- 196 (540)
.+ ..+...+. . ..-..|...++ .....+ ..-++||||||-++.. .++..++...
T Consensus 500 --------Ti------~~~l~~l~-~-~~~~~tv~~fl----~~~~~l-~~~~vlIVDEAsMl~~----~~~~~Ll~~a~ 554 (1960)
T TIGR02760 500 --------TF------ITWVKNLF-N-DDQDHTVQGLL----DKSSPF-SNKDIFVVDEANKLSN----NELLKLIDKAE 554 (1960)
T ss_pred --------hH------HHHHHhhc-c-cccchhHHHhh----cccCCC-CCCCEEEEECCCCCCH----HHHHHHHHHHh
Confidence 00 00000000 0 01122333333 111222 5678999999995533 3566666655
Q ss_pred CcccceeeEeee--c-----cHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcCcccHH-HHHHHHHHhcccCCc
Q psy16633 197 PKLYQAILASAT--L-----SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKA-TILYTLLKLNLVQGK 268 (540)
Q Consensus 197 ~~~~q~il~SAT--l-----~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~~~k~-~~l~~ll~~~~~~~k 268 (540)
+.+.++|++-=+ + ...+..+.... -..+.+..... ....+ .........+. .+...++.+...+.+
T Consensus 555 ~~garvVlvGD~~QL~sV~aG~~f~~L~~~g---v~t~~l~~i~r-q~~~v--~i~~~~~~~r~~~ia~~y~~L~~~r~~ 628 (1960)
T TIGR02760 555 QHNSKLILLNDSAQRQGMSAGSAIDLLKEGG---VTTYAWVDTKQ-QKASV--EISEAVDKLRVDYIASAWLDLTPDRQN 628 (1960)
T ss_pred hcCCEEEEEcChhhcCccccchHHHHHHHCC---CcEEEeecccc-cCcce--eeeccCchHHHHHHHHHHHhcccccCc
Confidence 456788877543 1 12233333221 12222222111 11111 11111222222 244444444434446
Q ss_pred EEEEecChhhHHHHHHH----HHhCC------CceEEeC-CCCCHHHHHH
Q psy16633 269 TIIFVNTVDKCYKLKLY----LEQFK------ISTCVLN-SELPAKARCH 307 (540)
Q Consensus 269 ~IIF~~s~~~~~~l~~~----L~~~~------~~~~~l~-~~l~~~~r~~ 307 (540)
++|++.+..+...|... |...| +....+. ..|+..++..
T Consensus 629 tliv~~t~~dr~~Ln~~iR~~L~~~G~L~~~~~~~~~L~p~~lt~~e~r~ 678 (1960)
T TIGR02760 629 SQVLATTHREQQDLTQIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRRN 678 (1960)
T ss_pred eEEEcCCcHHHHHHHHHHHHHHHHcCCcCCCceEEEEeccCCCCHHHHhh
Confidence 99999997776665544 43333 2333444 3566666653
No 220
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=96.26 E-value=0.02 Score=63.77 Aligned_cols=70 Identities=17% Similarity=0.192 Sum_probs=53.5
Q ss_pred CChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHH
Q psy16633 40 EPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELT 115 (540)
Q Consensus 40 ~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~ 115 (540)
.+++-|++|+.. .+..++|.|..|||||.+.+--+. .++... ...+.++|+++.|+..|.++.+.+..+.
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria-~Li~~~---~v~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIA-HLIRGC---GYQARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHH-HHHHhc---CCCHHHeeeEechHHHHHHHHHHHHHHh
Confidence 478899999864 356799999999999987554444 444321 1356789999999999999999888765
No 221
>KOG1131|consensus
Probab=96.20 E-value=0.073 Score=55.22 Aligned_cols=73 Identities=14% Similarity=0.066 Sum_probs=43.0
Q ss_pred CCChHHHHHHHHH----HhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHH
Q psy16633 39 LEPTLIQERAIPL----ILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQEL 114 (540)
Q Consensus 39 ~~pt~~Q~~ai~~----il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l 114 (540)
..-.|-|-+=.-. +-.+.++++.+|+|+|||.+.+--++..-+.- .....+.++..-|..=.+.....++.+
T Consensus 15 ~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~----p~~~~KliYCSRTvpEieK~l~El~~l 90 (755)
T KOG1131|consen 15 DYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHY----PDEHRKLIYCSRTVPEIEKALEELKRL 90 (755)
T ss_pred cccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhC----CcccceEEEecCcchHHHHHHHHHHHH
Confidence 3444555444322 23456899999999999986554444443332 124567777776665555555555554
Q ss_pred H
Q psy16633 115 T 115 (540)
Q Consensus 115 ~ 115 (540)
.
T Consensus 91 ~ 91 (755)
T KOG1131|consen 91 M 91 (755)
T ss_pred H
Confidence 4
No 222
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.19 E-value=0.052 Score=48.30 Aligned_cols=38 Identities=29% Similarity=0.352 Sum_probs=23.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHH
Q psy16633 58 VLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKEL 103 (540)
Q Consensus 58 ~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~L 103 (540)
+++.|++|+|||.... .++..+. ..+..++++......
T Consensus 2 ~~i~G~~G~GKT~l~~-~i~~~~~-------~~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLAL-QLALNIA-------TKGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHH-HHHHHHH-------hcCCEEEEEECCcch
Confidence 6899999999997433 2332221 246677777655443
No 223
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.18 E-value=0.068 Score=55.13 Aligned_cols=130 Identities=13% Similarity=0.054 Sum_probs=66.3
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEE-c-CcHHHHHHHHHHHHHHHhhcCCCceEEEeecCccc
Q psy16633 56 KDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVL-S-PSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDV 133 (540)
Q Consensus 56 kd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil-~-Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~ 133 (540)
+.+++.+|||+|||.+..--+ ..+... ....+.++.++ + +.|.-+.. +++.++...+ +.+
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA-~~~~~~---~~~~g~~V~lit~Dt~R~aa~e---QL~~~a~~lg--vpv--------- 236 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLA-AIYGIN---SDDKSLNIKIITIDNYRIGAKK---QIQTYGDIMG--IPV--------- 236 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHH-HHHHhh---hccCCCeEEEEeccCccHHHHH---HHHHHhhcCC--cce---------
Confidence 458899999999998654332 222111 00123344433 3 33343332 3445544332 111
Q ss_pred ccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCC-cHHHHHHHHHhCC-cccceeeEeeeccH
Q psy16633 134 SVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFG-YEDDMKAVLKFLP-KLYQAILASATLSE 211 (540)
Q Consensus 134 ~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~-~~~~l~~i~~~l~-~~~q~il~SATl~~ 211 (540)
.++-++..+...+.. . .+.++|+||++.+..... .-..+..++.... ..-.++.+|||...
T Consensus 237 ------------~~~~~~~~l~~~L~~----~-~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~ 299 (388)
T PRK12723 237 ------------KAIESFKDLKEEITQ----S-KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT 299 (388)
T ss_pred ------------EeeCcHHHHHHHHHH----h-CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH
Confidence 112244555444433 2 568899999999765321 1134444555443 22356889999874
Q ss_pred H-HHHHHHHh
Q psy16633 212 D-VLSLKHLI 220 (540)
Q Consensus 212 ~-~~~~~~~~ 220 (540)
. +......+
T Consensus 300 ~~~~~~~~~~ 309 (388)
T PRK12723 300 SDVKEIFHQF 309 (388)
T ss_pred HHHHHHHHHh
Confidence 3 33333333
No 224
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.17 E-value=0.099 Score=53.36 Aligned_cols=131 Identities=17% Similarity=0.249 Sum_probs=75.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccc
Q psy16633 55 NKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVS 134 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~ 134 (540)
++-+.+.||||.|||.+..--+....+. .....-+||.+-|--.+ -.++++.++.-++ +
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~-----~~~~kVaiITtDtYRIG--A~EQLk~Ya~im~--v------------ 261 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVML-----KKKKKVAIITTDTYRIG--AVEQLKTYADIMG--V------------ 261 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhh-----ccCcceEEEEeccchhh--HHHHHHHHHHHhC--C------------
Confidence 6779999999999998643333222211 12344556665554333 2466777776552 2
Q ss_pred cchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCcccc-ccCCcHHHHHHHHHhCCcccceeeEeeecc-HH
Q psy16633 135 VQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLV-FSFGYEDDMKAVLKFLPKLYQAILASATLS-ED 212 (540)
Q Consensus 135 ~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l-~~~~~~~~l~~i~~~l~~~~q~il~SATl~-~~ 212 (540)
|=.++-+|.-|...+.. + .+.++|.+|=+-+- .+......+..+.......--.+.+|||.. .+
T Consensus 262 ---------p~~vv~~~~el~~ai~~----l-~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~d 327 (407)
T COG1419 262 ---------PLEVVYSPKELAEAIEA----L-RDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYED 327 (407)
T ss_pred ---------ceEEecCHHHHHHHHHH----h-hcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHH
Confidence 22455566666655543 2 56688888876522 122233556666665555556788999976 44
Q ss_pred HHHHHHHh
Q psy16633 213 VLSLKHLI 220 (540)
Q Consensus 213 ~~~~~~~~ 220 (540)
+......+
T Consensus 328 lkei~~~f 335 (407)
T COG1419 328 LKEIIKQF 335 (407)
T ss_pred HHHHHHHh
Confidence 55555544
No 225
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.16 E-value=0.051 Score=51.77 Aligned_cols=18 Identities=22% Similarity=0.451 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCchHHHHH
Q psy16633 55 NKDVLVRARTGSGKTGAF 72 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a~ 72 (540)
+..+++.|++|+|||...
T Consensus 38 ~~~lll~G~~G~GKT~la 55 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLL 55 (226)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467999999999999743
No 226
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=96.13 E-value=0.077 Score=57.37 Aligned_cols=139 Identities=13% Similarity=0.184 Sum_probs=87.6
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCccc
Q psy16633 54 QNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDV 133 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~ 133 (540)
+.|-.++..|=-.|||+... +++..++.. ..+.++++.+|.+..++.+++.+..........-.+....| ...
T Consensus 253 kqk~tVflVPRR~GKTwivv-~iI~~ll~s-----~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~I 325 (738)
T PHA03368 253 RQRATVFLVPRRHGKTWFLV-PLIALALAT-----FRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ETI 325 (738)
T ss_pred hccceEEEecccCCchhhHH-HHHHHHHHh-----CCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cEE
Confidence 44668999999999999544 777665542 36899999999999999999999887664322212222223 211
Q ss_pred ccchhhhhCC--CCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCCcHHHHHHHHHhCC-cccceeeEeeecc
Q psy16633 134 SVQEPLLVER--PDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLP-KLYQAILASATLS 210 (540)
Q Consensus 134 ~~~~~~l~~~--~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~l~-~~~q~il~SATl~ 210 (540)
.-.+..+ +.|.++|.. ..+...- ..++++|+|||+.+.+. .+..++..+. .+.++|++|.|-+
T Consensus 326 ---~i~f~nG~kstI~FaSar------ntNsiRG-qtfDLLIVDEAqFIk~~----al~~ilp~l~~~n~k~I~ISS~Ns 391 (738)
T PHA03368 326 ---SFSFPDGSRSTIVFASSH------NTNGIRG-QDFNLLFVDEANFIRPD----AVQTIMGFLNQTNCKIIFVSSTNT 391 (738)
T ss_pred ---EEEecCCCccEEEEEecc------CCCCccC-CcccEEEEechhhCCHH----HHHHHHHHHhccCccEEEEecCCC
Confidence 0011112 366666421 1222222 57899999999977553 4444444432 4789999999866
Q ss_pred HHH
Q psy16633 211 EDV 213 (540)
Q Consensus 211 ~~~ 213 (540)
.+.
T Consensus 392 ~~~ 394 (738)
T PHA03368 392 GKA 394 (738)
T ss_pred Ccc
Confidence 543
No 227
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.13 E-value=0.084 Score=54.02 Aligned_cols=128 Identities=16% Similarity=0.176 Sum_probs=65.2
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEc--CcHHHHHHHHHHHHHHHhhcCCCceEEEeecCccc
Q psy16633 56 KDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLS--PSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDV 133 (540)
Q Consensus 56 kd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~--Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~ 133 (540)
+.+++.+|||+|||.....-+ ..+. ..+.++.++. |.|.-+ .++++.++...
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA-~~L~-------~~GkkVglI~aDt~RiaA---vEQLk~yae~l--------------- 295 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMA-WQFH-------GKKKTVGFITTDHSRIGT---VQQLQDYVKTI--------------- 295 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHH-HHHH-------HcCCcEEEEecCCcchHH---HHHHHHHhhhc---------------
Confidence 468899999999997543332 2232 2344454443 333212 22333333222
Q ss_pred ccchhhhhCCCC-EEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCC-cHHHHHHHHHhCCcccceeeEeeecc-
Q psy16633 134 SVQEPLLVERPD-IVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFG-YEDDMKAVLKFLPKLYQAILASATLS- 210 (540)
Q Consensus 134 ~~~~~~l~~~~~-Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~-~~~~l~~i~~~l~~~~q~il~SATl~- 210 (540)
+.. +++.+|..+.+.+...... .+.++|+||-+=+..... .-..+..++....+..-++.+|||..
T Consensus 296 ---------gipv~v~~d~~~L~~aL~~lk~~--~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~ 364 (436)
T PRK11889 296 ---------GFEVIAVRDEAAMTRALTYFKEE--ARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS 364 (436)
T ss_pred ---------CCcEEecCCHHHHHHHHHHHHhc--cCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh
Confidence 112 2244677776666432111 257899999887543221 12334444433333334566898765
Q ss_pred HHHHHHHHHh
Q psy16633 211 EDVLSLKHLI 220 (540)
Q Consensus 211 ~~~~~~~~~~ 220 (540)
.++......+
T Consensus 365 ~d~~~i~~~F 374 (436)
T PRK11889 365 KDMIEIITNF 374 (436)
T ss_pred HHHHHHHHHh
Confidence 4545555544
No 228
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.11 E-value=0.12 Score=52.22 Aligned_cols=58 Identities=19% Similarity=0.281 Sum_probs=35.0
Q ss_pred CChHHHHHHHHHHh--------cCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHH
Q psy16633 40 EPTLIQERAIPLIL--------QNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQ 106 (540)
Q Consensus 40 ~pt~~Q~~ai~~il--------~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q 106 (540)
.|+..+..++..+. .++++++.|+||+|||.. +.++...++. .+..|+++ +..+|..+
T Consensus 160 ~~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThL-a~aIa~~l~~-------~g~~V~y~-t~~~l~~~ 225 (329)
T PRK06835 160 SPRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFL-SNCIAKELLD-------RGKSVIYR-TADELIEI 225 (329)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHH-HHHHHHHHHH-------CCCeEEEE-EHHHHHHH
Confidence 34445555555333 357899999999999973 3445555543 35566664 44455443
No 229
>PRK11054 helD DNA helicase IV; Provisional
Probab=96.05 E-value=0.057 Score=60.03 Aligned_cols=71 Identities=24% Similarity=0.275 Sum_probs=53.0
Q ss_pred CCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHH
Q psy16633 39 LEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELT 115 (540)
Q Consensus 39 ~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~ 115 (540)
..+++-|++|+-. ...+++|.|..|||||.+.+ .-+..++... ...+.++|+++.|+..|..+.+.+....
T Consensus 195 ~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~-~r~ayLl~~~---~~~~~~IL~ltft~~AA~em~eRL~~~l 265 (684)
T PRK11054 195 SPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLV-ARAGWLLARG---QAQPEQILLLAFGRQAAEEMDERIRERL 265 (684)
T ss_pred CCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHH-HHHHHHHHhC---CCCHHHeEEEeccHHHHHHHHHHHHHhc
Confidence 4689999999853 34568999999999998644 3344444321 2356799999999999999988887653
No 230
>PRK14974 cell division protein FtsY; Provisional
Probab=96.01 E-value=0.057 Score=54.59 Aligned_cols=54 Identities=15% Similarity=0.270 Sum_probs=37.1
Q ss_pred CCccEEEEcCcccccc-CCcHHHHHHHHHhCCcccceeeEeeeccHHHHHHHHHh
Q psy16633 167 SSLEIVIIDEADLVFS-FGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLI 220 (540)
Q Consensus 167 ~~l~~lViDEah~l~~-~~~~~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~ 220 (540)
...++|+||.+.++.. ...-..+..+.....+..-++.+|||...+.......+
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f 275 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREF 275 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHH
Confidence 4567999999997753 23446666776666666678889998876655444433
No 231
>PRK06893 DNA replication initiation factor; Validated
Probab=95.97 E-value=0.027 Score=53.93 Aligned_cols=46 Identities=17% Similarity=0.196 Sum_probs=28.6
Q ss_pred CCccEEEEcCccccccC-CcHHHHHHHHHhCCc-ccceeeEeeeccHH
Q psy16633 167 SSLEIVIIDEADLVFSF-GYEDDMKAVLKFLPK-LYQAILASATLSED 212 (540)
Q Consensus 167 ~~l~~lViDEah~l~~~-~~~~~l~~i~~~l~~-~~q~il~SATl~~~ 212 (540)
.+.++|||||+|.+... .+...+..++..... ..+++++|++.++.
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH 137 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence 45689999999977533 233445555554433 34566777776543
No 232
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.86 E-value=0.34 Score=50.82 Aligned_cols=128 Identities=17% Similarity=0.165 Sum_probs=65.2
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHH-hhcccccCCCeEEEEEc--CcHHHHHHHHHHHHHHHhhcCCCceEEEeecCc
Q psy16633 55 NKDVLVRARTGSGKTGAFAIPMIQKII-NLKQTAQVQETKALVLS--PSKELCNQLHKNIQELTMKCSRDVKCVDISEQV 131 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a~~ipil~~l~-~~~~~~~~~~~~vlil~--Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~ 131 (540)
|+.+++.+|||+|||.+..--+ ..+. . ..+.++.++. |.|.-+ .+++..++...+ +.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA-~~~~~~------~~g~~V~li~~D~~r~~a---~eqL~~~a~~~~--vp-------- 280 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLA-ARYALL------YGKKKVALITLDTYRIGA---VEQLKTYAKIMG--IP-------- 280 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHH-HHHHHh------cCCCeEEEEECCccHHHH---HHHHHHHHHHhC--Cc--------
Confidence 4568999999999997544322 2221 1 1344444443 223222 234444443321 11
Q ss_pred ccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccC-CcHHHHHHHHHh-CCcccceeeEeeec
Q psy16633 132 DVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSF-GYEDDMKAVLKF-LPKLYQAILASATL 209 (540)
Q Consensus 132 ~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~-~~~~~l~~i~~~-l~~~~q~il~SATl 209 (540)
-.++.++..+...+... ...++|+||.+-+.... .....+..++.. ..+....+++|||.
T Consensus 281 -------------~~~~~~~~~l~~~l~~~-----~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~ 342 (424)
T PRK05703 281 -------------VEVVYDPKELAKALEQL-----RDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATT 342 (424)
T ss_pred -------------eEccCCHHhHHHHHHHh-----CCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCC
Confidence 12234555555555431 45789999998643211 122345555542 12234477899988
Q ss_pred cH-HHHHHHHHh
Q psy16633 210 SE-DVLSLKHLI 220 (540)
Q Consensus 210 ~~-~~~~~~~~~ 220 (540)
.. ++......+
T Consensus 343 ~~~~l~~~~~~f 354 (424)
T PRK05703 343 KYEDLKDIYKHF 354 (424)
T ss_pred CHHHHHHHHHHh
Confidence 74 444444443
No 233
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.85 E-value=0.051 Score=50.01 Aligned_cols=48 Identities=21% Similarity=0.246 Sum_probs=31.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHH
Q psy16633 58 VLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQEL 114 (540)
Q Consensus 58 ~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l 114 (540)
+++.||+|+|||...+--+...+ ..+.+++|++. .+-..++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~--------~~g~~v~~~s~-e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL--------ARGEPGLYVTL-EESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH--------HCCCcEEEEEC-CCCHHHHHHHHHHc
Confidence 68999999999974332223222 24667887754 45566666666655
No 234
>KOG0989|consensus
Probab=95.79 E-value=0.022 Score=55.44 Aligned_cols=42 Identities=21% Similarity=0.339 Sum_probs=30.8
Q ss_pred CCccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEeeec
Q psy16633 167 SSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209 (540)
Q Consensus 167 ~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~SATl 209 (540)
..++++|+||||.|.+.. ...+...++..+....+++...-+
T Consensus 128 ~~fKiiIlDEcdsmtsda-q~aLrr~mE~~s~~trFiLIcnyl 169 (346)
T KOG0989|consen 128 PPFKIIILDECDSMTSDA-QAALRRTMEDFSRTTRFILICNYL 169 (346)
T ss_pred CcceEEEEechhhhhHHH-HHHHHHHHhccccceEEEEEcCCh
Confidence 678999999999887643 456666777777777777766544
No 235
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=95.76 E-value=0.053 Score=60.68 Aligned_cols=69 Identities=16% Similarity=0.179 Sum_probs=52.1
Q ss_pred ChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHH
Q psy16633 41 PTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELT 115 (540)
Q Consensus 41 pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~ 115 (540)
+++-|++++.. .+.+++|.|..|||||.+.+--+. .++... .....++|+++.|+..+.++.+.+....
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~-~ll~~~---~~~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIA-YLIQNC---GYKARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHH-HHHHhc---CCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 68889998864 356899999999999986544444 444321 1356789999999999999999887765
No 236
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.71 E-value=0.046 Score=57.67 Aligned_cols=143 Identities=16% Similarity=0.129 Sum_probs=71.8
Q ss_pred EEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHH-hhcCCCceEEEeecCcccccch-
Q psy16633 60 VRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELT-MKCSRDVKCVDISEQVDVSVQE- 137 (540)
Q Consensus 60 i~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~-~~~~~~i~~~~~~~~~~~~~~~- 137 (540)
..+.||||||++..--|+..+-+ .....|+.|.......-....+..-. ... -.+-....++..+....
T Consensus 2 f~matgsgkt~~ma~lil~~y~k-------gyr~flffvnq~nilekt~~nftd~~s~ky--lf~e~i~~~d~~i~ikkv 72 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKK-------GYRNFLFFVNQANILEKTKLNFTDSVSSKY--LFSENININDENIEIKKV 72 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHh-------chhhEEEEecchhHHHHHHhhcccchhhhH--hhhhhhhcCCceeeeeee
Confidence 46899999999766666655522 34557777776555444433322110 000 00000001111111100
Q ss_pred ---hhhhCCCCEEEEChHHHHHHHhcCc---C---CccCCcc-EEEEcCccccccCCcH---------HHHHHHHH-h--
Q psy16633 138 ---PLLVERPDIVVATPARALAHLKAKT---L---DLKSSLE-IVIIDEADLVFSFGYE---------DDMKAVLK-F-- 195 (540)
Q Consensus 138 ---~~l~~~~~Ivv~Tp~~l~~~l~~~~---~---~~~~~l~-~lViDEah~l~~~~~~---------~~l~~i~~-~-- 195 (540)
..-.....|+++|.+.|...+.+.. + ++ .... +++-||||++-...-. ..|+..+. .
T Consensus 73 n~fsehnd~iei~fttiq~l~~d~~~~ken~itledl-~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~ 151 (812)
T COG3421 73 NNFSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDL-KDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALE 151 (812)
T ss_pred cccCccCCceEEEEeehHHHHHHHHhhccccccHhhH-hhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHh
Confidence 0012456799999999887775432 2 22 3333 4567999988643211 12222211 1
Q ss_pred CCcccceeeEeeeccHH
Q psy16633 196 LPKLYQAILASATLSED 212 (540)
Q Consensus 196 l~~~~q~il~SATl~~~ 212 (540)
-.+.--++.+|||.+.+
T Consensus 152 ~nkd~~~lef~at~~k~ 168 (812)
T COG3421 152 QNKDNLLLEFSATIPKE 168 (812)
T ss_pred cCCCceeehhhhcCCcc
Confidence 12334567789999843
No 237
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=95.67 E-value=0.043 Score=65.38 Aligned_cols=124 Identities=20% Similarity=0.186 Sum_probs=79.2
Q ss_pred ChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcCC
Q psy16633 41 PTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSR 120 (540)
Q Consensus 41 pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~ 120 (540)
.|+-|.+||. ..|++++|.|..|||||.+.+--++..+... ....++|+++=|+..+.++.+.+.......-.
T Consensus 2 ~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~-----~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~~ 74 (1232)
T TIGR02785 2 WTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRG-----VDIDRLLVVTFTNAAAREMKERIEEALQKALQ 74 (1232)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC-----CCHhhEEEEeccHHHHHHHHHHHHHHHHHHHh
Confidence 5889999997 4688999999999999998766666666431 23357999999999999999888876543210
Q ss_pred CceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHh-cCcCCccCCccEEEEcCccc
Q psy16633 121 DVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLK-AKTLDLKSSLEIVIIDEADL 179 (540)
Q Consensus 121 ~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~-~~~~~~~~~l~~lViDEah~ 179 (540)
. ..........+..-...-|+|-..+...+- .....+.-.-.+=|.||...
T Consensus 75 ~--------~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 75 Q--------EPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred c--------CchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 0 001011112233345677999988765543 32211101123345887764
No 238
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=95.63 E-value=0.028 Score=63.38 Aligned_cols=72 Identities=17% Similarity=0.210 Sum_probs=55.3
Q ss_pred CCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHh
Q psy16633 39 LEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTM 116 (540)
Q Consensus 39 ~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~ 116 (540)
..+++-|++|+.. ....++|.|..|||||.+..--+ .+++... ..++.++|+++-|+..|.++.+.+.++..
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ri-a~Li~~~---~v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRI-AWLLSVE---NASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHH-HHHHHcC---CCCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 4689999999864 35689999999999998754443 4444321 23567899999999999999999888764
No 239
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.61 E-value=0.11 Score=49.38 Aligned_cols=107 Identities=16% Similarity=0.239 Sum_probs=59.6
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccc
Q psy16633 57 DVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQ 136 (540)
Q Consensus 57 d~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~ 136 (540)
.+++.|++|+|||- .+-++...+.+. .++.+++++.. .+........+..
T Consensus 36 ~l~l~G~~G~GKTH-LL~Ai~~~~~~~-----~~~~~v~y~~~-~~f~~~~~~~~~~----------------------- 85 (219)
T PF00308_consen 36 PLFLYGPSGLGKTH-LLQAIANEAQKQ-----HPGKRVVYLSA-EEFIREFADALRD----------------------- 85 (219)
T ss_dssp EEEEEESTTSSHHH-HHHHHHHHHHHH-----CTTS-EEEEEH-HHHHHHHHHHHHT-----------------------
T ss_pred ceEEECCCCCCHHH-HHHHHHHHHHhc-----cccccceeecH-HHHHHHHHHHHHc-----------------------
Confidence 38999999999997 344444444332 34667777653 2333222222211
Q ss_pred hhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCC-cHHHHHHHHHhCC-cccceeeEeeeccHHH
Q psy16633 137 EPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFG-YEDDMKAVLKFLP-KLYQAILASATLSEDV 213 (540)
Q Consensus 137 ~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~-~~~~l~~i~~~l~-~~~q~il~SATl~~~~ 213 (540)
.....+.+.+ ...++++||.+|.+.... ....+..++..+. .+.++|+.|...|..+
T Consensus 86 ------------~~~~~~~~~~--------~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 86 ------------GEIEEFKDRL--------RSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp ------------TSHHHHHHHH--------CTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred ------------ccchhhhhhh--------hcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 0112222222 568899999999876532 3445555555543 3457777776766654
No 240
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.60 E-value=0.059 Score=57.26 Aligned_cols=44 Identities=18% Similarity=0.258 Sum_probs=26.6
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHH
Q psy16633 56 KDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQ 106 (540)
Q Consensus 56 kd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q 106 (540)
..+++.||+|+|||.. +-++...+... ..+.+++++ +..++..+
T Consensus 149 ~~l~l~G~~G~GKThL-~~ai~~~~~~~-----~~~~~v~yi-~~~~~~~~ 192 (450)
T PRK00149 149 NPLFIYGGVGLGKTHL-LHAIGNYILEK-----NPNAKVVYV-TSEKFTND 192 (450)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHHHHh-----CCCCeEEEE-EHHHHHHH
Confidence 3589999999999973 33444444331 235666666 43444433
No 241
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.56 E-value=0.086 Score=51.29 Aligned_cols=66 Identities=17% Similarity=0.275 Sum_probs=40.6
Q ss_pred CCCCChHHHHHHHHHHh-------cCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHH
Q psy16633 37 GWLEPTLIQERAIPLIL-------QNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHK 109 (540)
Q Consensus 37 g~~~pt~~Q~~ai~~il-------~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~ 109 (540)
.|.-....+..++..+. +++++++.|++|+|||.. +.++...+.. .|.++++ +++.+|+.++..
T Consensus 80 d~~~~~~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThL-a~Ai~~~l~~-------~g~sv~f-~~~~el~~~Lk~ 150 (254)
T COG1484 80 DFEFQPGIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHL-AIAIGNELLK-------AGISVLF-ITAPDLLSKLKA 150 (254)
T ss_pred cccCCcchhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHH-HHHHHHHHHH-------cCCeEEE-EEHHHHHHHHHH
Confidence 44445555555554443 567999999999999974 3344444432 3455544 667777666554
Q ss_pred HH
Q psy16633 110 NI 111 (540)
Q Consensus 110 ~l 111 (540)
.+
T Consensus 151 ~~ 152 (254)
T COG1484 151 AF 152 (254)
T ss_pred HH
Confidence 33
No 242
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.53 E-value=0.058 Score=51.89 Aligned_cols=42 Identities=12% Similarity=0.129 Sum_probs=24.2
Q ss_pred CccEEEEcCccccccC-CcHHHHHHHHHhCCc-c-cceeeEeeecc
Q psy16633 168 SLEIVIIDEADLVFSF-GYEDDMKAVLKFLPK-L-YQAILASATLS 210 (540)
Q Consensus 168 ~l~~lViDEah~l~~~-~~~~~l~~i~~~l~~-~-~q~il~SATl~ 210 (540)
+.++|+|||+|.+... .+...+..++..+.. . .++++ |++.+
T Consensus 97 ~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~-ts~~~ 141 (235)
T PRK08084 97 QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLI-TGDRP 141 (235)
T ss_pred hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEE-eCCCC
Confidence 3468999999977543 344555555555432 2 34444 55444
No 243
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.49 E-value=0.1 Score=62.39 Aligned_cols=64 Identities=22% Similarity=0.343 Sum_probs=45.0
Q ss_pred CChHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHH
Q psy16633 40 EPTLIQERAIPLILQN--KDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQL 107 (540)
Q Consensus 40 ~pt~~Q~~ai~~il~g--kd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~ 107 (540)
.+++-|++|+..++.+ +-++|.+..|+|||.+. -.++..+... ....+..++.++||-.-+..+
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l-~~i~~~~~~l---~e~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQF-RAVMSAVNML---PESERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHH-HHHHHHHHHH---hhccCceEEEEechHHHHHHH
Confidence 6899999999999976 55999999999999742 2222222110 013567899999997765544
No 244
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=95.47 E-value=0.073 Score=55.45 Aligned_cols=32 Identities=22% Similarity=0.330 Sum_probs=26.2
Q ss_pred ChHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q psy16633 41 PTLIQERAIPLILQNKDVLVRARTGSGKTGAF 72 (540)
Q Consensus 41 pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~ 72 (540)
|-......+..+..++++++.+|+|+|||..+
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA 211 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVA 211 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHH
Confidence 45566677777888999999999999999754
No 245
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=95.47 E-value=0.11 Score=55.72 Aligned_cols=72 Identities=8% Similarity=0.086 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhc-----C----CcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHH
Q psy16633 43 LIQERAIPLILQ-----N----KDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQE 113 (540)
Q Consensus 43 ~~Q~~ai~~il~-----g----kd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~ 113 (540)
|+|+-.+-.++. | +.+++.-|=|.|||.....-++-.++-. ...+..+++++++++-|..+++.+..
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~----g~~~~~i~~~A~~~~QA~~~f~~~~~ 76 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD----GEPGAEIYCAANTRDQAKIVFDEAKK 76 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC----CccCceEEEEeCCHHHHHHHHHHHHH
Confidence 567766666652 2 3588899999999975444334333321 24578899999999999999999888
Q ss_pred HHhhc
Q psy16633 114 LTMKC 118 (540)
Q Consensus 114 l~~~~ 118 (540)
.....
T Consensus 77 ~i~~~ 81 (477)
T PF03354_consen 77 MIEAS 81 (477)
T ss_pred HHHhC
Confidence 77653
No 246
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=95.43 E-value=0.041 Score=62.05 Aligned_cols=72 Identities=17% Similarity=0.210 Sum_probs=55.0
Q ss_pred CCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHh
Q psy16633 39 LEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTM 116 (540)
Q Consensus 39 ~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~ 116 (540)
..+++-|++|+.. ....++|.|..|||||.+..--+. +++... ...+.++|+++-|+..|.++.+.+..+..
T Consensus 8 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~vl~~Ria-~Li~~~---~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 8 DSLNDKQREAVAA--PLGNMLVLAGAGSGKTRVLVHRIA-WLMQVE---NASPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred HhcCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHH-HHHHcC---CCChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 4589999999864 346899999999999987544443 444321 23567899999999999999999888754
No 247
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.40 E-value=0.084 Score=53.21 Aligned_cols=41 Identities=17% Similarity=0.220 Sum_probs=27.8
Q ss_pred CCccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEee
Q psy16633 167 SSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207 (540)
Q Consensus 167 ~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~SA 207 (540)
...++|||||+|.+........+..+++..+..+++|+.|.
T Consensus 99 ~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n 139 (316)
T PHA02544 99 GGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITAN 139 (316)
T ss_pred CCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcC
Confidence 34678999999987333344566667777777776666543
No 248
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.36 E-value=0.13 Score=54.41 Aligned_cols=50 Identities=10% Similarity=0.261 Sum_probs=30.2
Q ss_pred CCccEEEEcCccccccCC-cHHHHHHHHHhC-CcccceeeEeeeccHHHHHH
Q psy16633 167 SSLEIVIIDEADLVFSFG-YEDDMKAVLKFL-PKLYQAILASATLSEDVLSL 216 (540)
Q Consensus 167 ~~l~~lViDEah~l~~~~-~~~~l~~i~~~l-~~~~q~il~SATl~~~~~~~ 216 (540)
...++++|||+|.+.... ....+..++..+ ....++++.|-+.|..+..+
T Consensus 201 ~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l 252 (445)
T PRK12422 201 RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAM 252 (445)
T ss_pred ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhh
Confidence 467899999999876543 234445554433 23456666665666655433
No 249
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=95.36 E-value=0.073 Score=59.55 Aligned_cols=83 Identities=17% Similarity=0.182 Sum_probs=66.2
Q ss_pred HHHHhcccCCcEEEEecChhhHHHHHHHHHh----CCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCccc
Q psy16633 258 TLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQ----FKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQI 333 (540)
Q Consensus 258 ~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~----~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~ 333 (540)
.++.....+.+++|.+|+..-|...+..+++ .|+++..++|+++..+|..++....+|..+|+|+|..
T Consensus 302 ~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~-------- 373 (681)
T PRK10917 302 AALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHA-------- 373 (681)
T ss_pred HHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHH--------
Confidence 3333333456899999999888877666554 5799999999999999999999999999999999972
Q ss_pred ccccccccccCccccccccCCCCCcCEEE
Q psy16633 334 NSTNNRKRKRDKESGVSRGIDFQFVSNVI 362 (540)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi 362 (540)
.+...+.+.++.+||
T Consensus 374 --------------ll~~~v~~~~l~lvV 388 (681)
T PRK10917 374 --------------LIQDDVEFHNLGLVI 388 (681)
T ss_pred --------------HhcccchhcccceEE
Confidence 445567778888776
No 250
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.31 E-value=0.08 Score=55.42 Aligned_cols=36 Identities=19% Similarity=0.249 Sum_probs=23.9
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEc
Q psy16633 57 DVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLS 98 (540)
Q Consensus 57 d~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~ 98 (540)
.+++.|++|+|||.. +-.+...+... ..+.+++++.
T Consensus 138 ~l~l~G~~G~GKThL-~~ai~~~l~~~-----~~~~~v~yi~ 173 (405)
T TIGR00362 138 PLFIYGGVGLGKTHL-LHAIGNEILEN-----NPNAKVVYVS 173 (405)
T ss_pred eEEEECCCCCcHHHH-HHHHHHHHHHh-----CCCCcEEEEE
Confidence 489999999999973 34444554431 2356777764
No 251
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.29 E-value=0.14 Score=62.15 Aligned_cols=64 Identities=20% Similarity=0.287 Sum_probs=45.5
Q ss_pred CChHHHHHHHHHHhcCC--cEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHH
Q psy16633 40 EPTLIQERAIPLILQNK--DVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQL 107 (540)
Q Consensus 40 ~pt~~Q~~ai~~il~gk--d~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~ 107 (540)
.+++-|.+|+..++.+. -++|.+..|+|||.. +-.++..+... ....+..++.++||-.-+..+
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~-l~~v~~~~~~l---~~~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQ-FRAVMSAVNTL---PESERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHH-HHHHHHHHHHh---hcccCceEEEECCcHHHHHHH
Confidence 68999999999999864 589999999999964 33333332211 113467789999997766543
No 252
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.24 E-value=0.06 Score=54.13 Aligned_cols=66 Identities=26% Similarity=0.387 Sum_probs=45.6
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHh-cCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHH
Q psy16633 30 LQAIAKLGWLEPTLIQERAIPLIL-QNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKEL 103 (540)
Q Consensus 30 ~~~l~~~g~~~pt~~Q~~ai~~il-~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~L 103 (540)
+..+...|+ +++.|.+.+..+. .+++++|.|+||||||. ++-.++..+.. ..+..+++++-.+.||
T Consensus 124 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTT-ll~aL~~~~~~-----~~~~~rivtIEd~~El 190 (319)
T PRK13894 124 LDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTT-LVNAIINEMVI-----QDPTERVFIIEDTGEI 190 (319)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHhhhh-----cCCCceEEEEcCCCcc
Confidence 445555666 5677777776554 56789999999999995 55566655422 1345678888777776
No 253
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.23 E-value=0.068 Score=53.70 Aligned_cols=64 Identities=23% Similarity=0.322 Sum_probs=43.4
Q ss_pred HHHHCCCCCChHHHHHHHHHHhc-CCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHH
Q psy16633 32 AIAKLGWLEPTLIQERAIPLILQ-NKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKEL 103 (540)
Q Consensus 32 ~l~~~g~~~pt~~Q~~ai~~il~-gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~L 103 (540)
.+...|. .++.|...+..+.. +++++|+++||||||. ++-.++..+... ....+++.+=.+.||
T Consensus 122 ~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTT-ll~aL~~~i~~~-----~~~~rivtiEd~~El 186 (323)
T PRK13833 122 DYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTT-LANAVIAEIVAS-----APEDRLVILEDTAEI 186 (323)
T ss_pred HHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHHHhcC-----CCCceEEEecCCccc
Confidence 3445555 56777777765554 6789999999999997 455555555321 245677877777776
No 254
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=95.23 E-value=0.3 Score=54.71 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=18.4
Q ss_pred CCccEEEEcCccccccCCcHHHHHHHHH
Q psy16633 167 SSLEIVIIDEADLVFSFGYEDDMKAVLK 194 (540)
Q Consensus 167 ~~l~~lViDEah~l~~~~~~~~l~~i~~ 194 (540)
....+|||||+|.+... ....+..++.
T Consensus 868 r~v~IIILDEID~L~kK-~QDVLYnLFR 894 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITK-TQKVLFTLFD 894 (1164)
T ss_pred ccceEEEeehHhhhCcc-HHHHHHHHHH
Confidence 45678999999988764 2344555544
No 255
>PF13871 Helicase_C_4: Helicase_C-like
Probab=95.12 E-value=0.038 Score=53.87 Aligned_cols=64 Identities=28% Similarity=0.369 Sum_probs=52.0
Q ss_pred HHHHHHhcCCccEEEeCCCCccCCcccccccccccccCccccccccCCCCC--------cCEEEeCCCCCCcccchhccc
Q psy16633 307 HAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQF--------VSNVINFDFPLDIQCYIHRAG 378 (540)
Q Consensus 307 ~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~--------v~~Vi~~d~p~s~~~yiqr~G 378 (540)
...+.|++|+.+|+|.|+ +.+.||.+.. -++-|...+|+|.+..+|..|
T Consensus 52 ~e~~~F~~g~k~v~iis~-----------------------AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~G 108 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISD-----------------------AGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFG 108 (278)
T ss_pred HHHHHHhCCCceEEEEec-----------------------ccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhc
Confidence 566799999999999999 8889998763 235667889999999999999
Q ss_pred cccCCCCC-ceEEEEe
Q psy16633 379 RTARGKNQ-GTALSFV 393 (540)
Q Consensus 379 RagR~g~~-g~~i~~~ 393 (540)
|+.|.|+. .-.+.++
T Consensus 109 R~hRsnQ~~~P~y~~l 124 (278)
T PF13871_consen 109 RTHRSNQVSAPEYRFL 124 (278)
T ss_pred cccccccccCCEEEEe
Confidence 99999974 3334443
No 256
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=95.12 E-value=0.1 Score=54.53 Aligned_cols=144 Identities=16% Similarity=0.200 Sum_probs=81.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHH-HHHHHHHHHHHHHhhcCCCceEEEeecCcccccc
Q psy16633 58 VLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKE-LCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQ 136 (540)
Q Consensus 58 ~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~-La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~ 136 (540)
.++.+..|||||.+...-++..++.. ..+.+++++-|+.. |...++..+.......+..... .. ..... .
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~-----~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~-~~-~~~~~--~ 74 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAIN-----KKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEF-KK-SKSSM--E 74 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhc-----CCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhhe-ee-cCCcc--E
Confidence 67899999999998888777777652 15688999989886 7777778777766554321111 11 11100 0
Q ss_pred hhhhhCCCCEEEECh-HHHHHHHhcCcCCccCCccEEEEcCccccccCCcHHHHHHHHHhCC--cccceeeEeeeccHHH
Q psy16633 137 EPLLVERPDIVVATP-ARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLP--KLYQAILASATLSEDV 213 (540)
Q Consensus 137 ~~~l~~~~~Ivv~Tp-~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~l~--~~~q~il~SATl~~~~ 213 (540)
......+..|++..- +...+ +.+ . ..+.++.+|||..+.. ..+..+...+. .....+++|.|+....
T Consensus 75 i~~~~~g~~i~f~g~~d~~~~-ik~----~-~~~~~~~idEa~~~~~----~~~~~l~~rlr~~~~~~~i~~t~NP~~~~ 144 (396)
T TIGR01547 75 IKILNTGKKFIFKGLNDKPNK-LKS----G-AGIAIIWFEEASQLTF----EDIKELIPRLRETGGKKFIIFSSNPESPL 144 (396)
T ss_pred EEecCCCeEEEeecccCChhH-hhC----c-ceeeeehhhhhhhcCH----HHHHHHHHHhhccCCccEEEEEcCcCCCc
Confidence 000111334555442 11111 111 1 3468999999997643 35555555543 2222478888886533
Q ss_pred HHHHHHh
Q psy16633 214 LSLKHLI 220 (540)
Q Consensus 214 ~~~~~~~ 220 (540)
.-+...+
T Consensus 145 ~w~~~~f 151 (396)
T TIGR01547 145 HWVKKRF 151 (396)
T ss_pred cHHHHHH
Confidence 3334433
No 257
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.09 E-value=0.31 Score=45.43 Aligned_cols=123 Identities=19% Similarity=0.181 Sum_probs=63.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEc--CcHHHHHHHHHHHHHHHhhcCCCceEEEeecCccccc
Q psy16633 58 VLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLS--PSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSV 135 (540)
Q Consensus 58 ~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~--Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~ 135 (540)
+++.+|||+|||.+..- +...+.. . +.++.+++ ..|.=+ .++++.++... ++.+.......
T Consensus 4 i~lvGptGvGKTTt~aK-LAa~~~~------~-~~~v~lis~D~~R~ga---~eQL~~~a~~l--~vp~~~~~~~~---- 66 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAK-LAARLKL------K-GKKVALISADTYRIGA---VEQLKTYAEIL--GVPFYVARTES---- 66 (196)
T ss_dssp EEEEESTTSSHHHHHHH-HHHHHHH------T-T--EEEEEESTSSTHH---HHHHHHHHHHH--TEEEEESSTTS----
T ss_pred EEEECCCCCchHhHHHH-HHHHHhh------c-cccceeecCCCCCccH---HHHHHHHHHHh--ccccchhhcch----
Confidence 68899999999986433 2223222 2 34444433 334333 34566666555 33333221110
Q ss_pred chhhhhCCCCEEEEChHHHH-HHHhcCcCCccCCccEEEEcCcccccc-CCcHHHHHHHHHhCCcccceeeEeeeccHHH
Q psy16633 136 QEPLLVERPDIVVATPARAL-AHLKAKTLDLKSSLEIVIIDEADLVFS-FGYEDDMKAVLKFLPKLYQAILASATLSEDV 213 (540)
Q Consensus 136 ~~~~l~~~~~Ivv~Tp~~l~-~~l~~~~~~~~~~l~~lViDEah~l~~-~~~~~~l~~i~~~l~~~~q~il~SATl~~~~ 213 (540)
.|..+. +.++... . ++.++|+||-+-+... ......+..+.....+..-.+.+|||...+.
T Consensus 67 --------------~~~~~~~~~l~~~~--~-~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~ 129 (196)
T PF00448_consen 67 --------------DPAEIAREALEKFR--K-KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQED 129 (196)
T ss_dssp --------------CHHHHHHHHHHHHH--H-TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHH
T ss_pred --------------hhHHHHHHHHHHHh--h-cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHH
Confidence 122222 2232211 1 4577899998864322 1233566666666665566788999987654
Q ss_pred H
Q psy16633 214 L 214 (540)
Q Consensus 214 ~ 214 (540)
.
T Consensus 130 ~ 130 (196)
T PF00448_consen 130 L 130 (196)
T ss_dssp H
T ss_pred H
Confidence 3
No 258
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=95.03 E-value=0.2 Score=53.67 Aligned_cols=133 Identities=16% Similarity=0.244 Sum_probs=84.1
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCccc
Q psy16633 54 QNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDV 133 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~ 133 (540)
+.|-.+.--|--.|||+ ++.|++..++.. -.+.++.|++.-|--++-+.+++..-+...-..-.+....+
T Consensus 201 KQkaTVFLVPRRHGKTW-f~VpiIsllL~s-----~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k~---- 270 (668)
T PHA03372 201 KQKATVFLVPRRHGKTW-FIIPIISFLLKN-----IIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENKD---- 270 (668)
T ss_pred hccceEEEecccCCcee-hHHHHHHHHHHh-----hcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeecC----
Confidence 34667778899999999 899999988873 57899999999998888877766543332211111111111
Q ss_pred ccchhhhhCCCCEEEEChHH-----HHHHHhcCcCCccCCccEEEEcCccccccCCcHHHHHHHHHhCC-cccceeeEee
Q psy16633 134 SVQEPLLVERPDIVVATPAR-----ALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLP-KLYQAILASA 207 (540)
Q Consensus 134 ~~~~~~l~~~~~Ivv~Tp~~-----l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~l~-~~~q~il~SA 207 (540)
..|.+.-|+. +......+...- ..+.++++||||-+- .+.+..|+..+. +++++|+.|.
T Consensus 271 ----------~tI~~s~pg~Kst~~fasc~n~NsiRG-Q~fnll~VDEA~FI~----~~a~~tilgfm~q~~~KiIfISS 335 (668)
T PHA03372 271 ----------NVISIDHRGAKSTALFASCYNTNSIRG-QNFHLLLVDEAHFIK----KDAFNTILGFLAQNTTKIIFISS 335 (668)
T ss_pred ----------cEEEEecCCCcceeeehhhccCccccC-CCCCEEEEehhhccC----HHHHHHhhhhhcccCceEEEEeC
Confidence 1233333322 111112233333 678999999999542 345667776654 5788999998
Q ss_pred eccH
Q psy16633 208 TLSE 211 (540)
Q Consensus 208 Tl~~ 211 (540)
|-+.
T Consensus 336 ~Nsg 339 (668)
T PHA03372 336 TNTT 339 (668)
T ss_pred CCCC
Confidence 8543
No 259
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.99 E-value=0.072 Score=52.37 Aligned_cols=77 Identities=14% Similarity=0.094 Sum_probs=40.2
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHH
Q psy16633 28 IPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQL 107 (540)
Q Consensus 28 ~i~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~ 107 (540)
.++++|...|....-+.-.+.+--+..|.-+++.|+||+|||.. +.-++..+.. ..+.+++++.-- +-..++
T Consensus 3 ~~~~~~~~~~~~tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l-~~~~~~~~~~------~~g~~vl~iS~E-~~~~~~ 74 (271)
T cd01122 3 EIREALSNEEVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTF-LREYALDLIT------QHGVRVGTISLE-EPVVRT 74 (271)
T ss_pred hhhccccccCCCCCcceeeeeeEEEcCCcEEEEEcCCCCCHHHH-HHHHHHHHHH------hcCceEEEEEcc-cCHHHH
Confidence 45566664443322222222222334567899999999999973 3333333322 236778887632 223444
Q ss_pred HHHHH
Q psy16633 108 HKNIQ 112 (540)
Q Consensus 108 ~~~l~ 112 (540)
...+.
T Consensus 75 ~~r~~ 79 (271)
T cd01122 75 ARRLL 79 (271)
T ss_pred HHHHH
Confidence 44443
No 260
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.99 E-value=0.61 Score=52.06 Aligned_cols=130 Identities=15% Similarity=0.077 Sum_probs=62.3
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEc-CcHHHHHHHHHHHHHHHhhcCCCceEEEeecCccc
Q psy16633 55 NKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLS-PSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDV 133 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~-Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~ 133 (540)
|+-+.+.+|||+|||.+...-+...... ..+.++.++. -+--.+ ..++++.++...+ +.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~------~G~kkV~lit~Dt~Rig--A~eQL~~~a~~~g--vp---------- 244 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAR------EGADQLALLTTDSFRIG--ALEQLRIYGRILG--VP---------- 244 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHH------cCCCeEEEecCcccchH--HHHHHHHHHHhCC--CC----------
Confidence 3457899999999997644332222111 1223444433 221111 2345555554431 11
Q ss_pred ccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccC-CcHHHHHHHHHhCCcccceeeEeeeccH-
Q psy16633 134 SVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSF-GYEDDMKAVLKFLPKLYQAILASATLSE- 211 (540)
Q Consensus 134 ~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~-~~~~~l~~i~~~l~~~~q~il~SATl~~- 211 (540)
-.++.+|..+.+.+... .+.++|+||=+=+.... .....+..+.....+...++.+|||...
T Consensus 245 -----------v~~~~~~~~l~~al~~~-----~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~ 308 (767)
T PRK14723 245 -----------VHAVKDAADLRFALAAL-----GDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGD 308 (767)
T ss_pred -----------ccccCCHHHHHHHHHHh-----cCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHH
Confidence 12233666665555432 44577888877644321 1122233333333344456777887653
Q ss_pred HHHHHHHHh
Q psy16633 212 DVLSLKHLI 220 (540)
Q Consensus 212 ~~~~~~~~~ 220 (540)
++......+
T Consensus 309 ~l~~i~~~f 317 (767)
T PRK14723 309 TLNEVVHAY 317 (767)
T ss_pred HHHHHHHHH
Confidence 334344333
No 261
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=94.98 E-value=0.18 Score=53.46 Aligned_cols=109 Identities=14% Similarity=0.128 Sum_probs=58.5
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccc
Q psy16633 57 DVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQ 136 (540)
Q Consensus 57 d~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~ 136 (540)
.+++.|++|+|||.. +-++...+... .++.+++++.+ .++..++...+....
T Consensus 143 pl~i~G~~G~GKTHL-l~Ai~~~l~~~-----~~~~~v~yv~~-~~f~~~~~~~l~~~~--------------------- 194 (450)
T PRK14087 143 PLFIYGESGMGKTHL-LKAAKNYIESN-----FSDLKVSYMSG-DEFARKAVDILQKTH--------------------- 194 (450)
T ss_pred ceEEECCCCCcHHHH-HHHHHHHHHHh-----CCCCeEEEEEH-HHHHHHHHHHHHHhh---------------------
Confidence 489999999999953 33444444321 34667777654 455544443332100
Q ss_pred hhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCC-cHHHHHHHHHhCC-cccceeeEeeeccHHH
Q psy16633 137 EPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFG-YEDDMKAVLKFLP-KLYQAILASATLSEDV 213 (540)
Q Consensus 137 ~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~-~~~~l~~i~~~l~-~~~q~il~SATl~~~~ 213 (540)
.+.+.+... + ...++|||||+|.+.... ..+.+..++..+. ...|+|+.|-..|...
T Consensus 195 ------------~~~~~~~~~-------~-~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l 253 (450)
T PRK14087 195 ------------KEIEQFKNE-------I-CQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELL 253 (450)
T ss_pred ------------hHHHHHHHH-------h-ccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 011111111 1 467799999999765322 2345555555543 3446665555555444
No 262
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=94.96 E-value=0.23 Score=52.46 Aligned_cols=37 Identities=11% Similarity=0.222 Sum_probs=24.5
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcC
Q psy16633 57 DVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSP 99 (540)
Q Consensus 57 d~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~P 99 (540)
.+++.||+|+|||.. +-++.+.+... ..+.+++++..
T Consensus 132 ~l~lyG~~G~GKTHL-l~ai~~~l~~~-----~~~~~v~yi~~ 168 (440)
T PRK14088 132 PLFIYGGVGLGKTHL-LQSIGNYVVQN-----EPDLRVMYITS 168 (440)
T ss_pred eEEEEcCCCCcHHHH-HHHHHHHHHHh-----CCCCeEEEEEH
Confidence 599999999999973 33444444331 23567777753
No 263
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=94.89 E-value=0.23 Score=42.41 Aligned_cols=16 Identities=31% Similarity=0.438 Sum_probs=13.1
Q ss_pred ccEEEEcCccccccCC
Q psy16633 169 LEIVIIDEADLVFSFG 184 (540)
Q Consensus 169 l~~lViDEah~l~~~~ 184 (540)
..+|+|||+|.+....
T Consensus 59 ~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKS 74 (132)
T ss_dssp SEEEEEETGGGTSHHC
T ss_pred ceeeeeccchhccccc
Confidence 4789999999887654
No 264
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=94.87 E-value=0.69 Score=51.25 Aligned_cols=157 Identities=16% Similarity=0.169 Sum_probs=91.9
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHhcCC--cEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHH
Q psy16633 25 LFCIPLQAIAKLGWLEPTLIQERAIPLILQNK--DVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKE 102 (540)
Q Consensus 25 L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~gk--d~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~ 102 (540)
.++..-+.+-.+..+.+..-|.+.+..++.++ -+++.|.-|=|||.+.-+.+.... .. ....+++|..|+.+
T Consensus 199 ~~~~~~~~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~-~~-----~~~~~iiVTAP~~~ 272 (758)
T COG1444 199 LDPVFPRELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAA-RL-----AGSVRIIVTAPTPA 272 (758)
T ss_pred CCCCCCHHHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHH-Hh-----cCCceEEEeCCCHH
Confidence 33334444666666666666666777777654 488999999999998777663222 10 12579999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCcccccc
Q psy16633 103 LCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFS 182 (540)
Q Consensus 103 La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~ 182 (540)
-++.+.+.+.+-....+..-.+..-..+ ...... .+...|=+-+|.... ..-+++|||||=.+-
T Consensus 273 nv~~Lf~fa~~~l~~lg~~~~v~~d~~g-~~~~~~---~~~~~i~y~~P~~a~-----------~~~DllvVDEAAaIp- 336 (758)
T COG1444 273 NVQTLFEFAGKGLEFLGYKRKVAPDALG-EIREVS---GDGFRIEYVPPDDAQ-----------EEADLLVVDEAAAIP- 336 (758)
T ss_pred HHHHHHHHHHHhHHHhCCcccccccccc-ceeeec---CCceeEEeeCcchhc-----------ccCCEEEEehhhcCC-
Confidence 8888877766655554322111111101 101000 012235566666431 115789999998442
Q ss_pred CCcHHHHHHHHHhCCcccceeeEeeecc
Q psy16633 183 FGYEDDMKAVLKFLPKLYQAILASATLS 210 (540)
Q Consensus 183 ~~~~~~l~~i~~~l~~~~q~il~SATl~ 210 (540)
-.-+..++.. .+.++||.|+.
T Consensus 337 ---lplL~~l~~~----~~rv~~sTTIh 357 (758)
T COG1444 337 ---LPLLHKLLRR----FPRVLFSTTIH 357 (758)
T ss_pred ---hHHHHHHHhh----cCceEEEeeec
Confidence 2334444433 35788888974
No 265
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.87 E-value=0.18 Score=49.58 Aligned_cols=112 Identities=21% Similarity=0.280 Sum_probs=58.4
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHhhccc----ccCCCeEEEEEcCcHHHHHHHHHHHHH-HHhhcCCCceEEEeecC
Q psy16633 56 KDVLVRARTGSGKTGAFAIPMIQKIINLKQT----AQVQETKALVLSPSKELCNQLHKNIQE-LTMKCSRDVKCVDISEQ 130 (540)
Q Consensus 56 kd~li~a~TGsGKT~a~~ipil~~l~~~~~~----~~~~~~~vlil~Pt~~La~q~~~~l~~-l~~~~~~~i~~~~~~~~ 130 (540)
.++++.|+||.|||. ++.++...-.. ....-+-+.+-+|...-....|..+-. ++... +. .
T Consensus 62 p~lLivG~snnGKT~-----Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~----~~-----~ 127 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTM-----IIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPY----RP-----R 127 (302)
T ss_pred CceEEecCCCCcHHH-----HHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCccc----CC-----C
Confidence 479999999999997 33555432111 111224555667776655555554333 22111 00 0
Q ss_pred cccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCCcH--HHHHHHHHhCCcccc
Q psy16633 131 VDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYE--DDMKAVLKFLPKLYQ 201 (540)
Q Consensus 131 ~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~~--~~l~~i~~~l~~~~q 201 (540)
.++- .--...+.+++. -+++++||||+|.++..... ......++.+.+..+
T Consensus 128 -------------~~~~-~~~~~~~~llr~------~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ 180 (302)
T PF05621_consen 128 -------------DRVA-KLEQQVLRLLRR------LGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQ 180 (302)
T ss_pred -------------CCHH-HHHHHHHHHHHH------cCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccC
Confidence 0000 000112333433 46789999999998876544 334445555555443
No 266
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=94.84 E-value=0.15 Score=55.31 Aligned_cols=48 Identities=13% Similarity=0.269 Sum_probs=30.3
Q ss_pred CCccEEEEcCccccccCC-cHHHHHHHHHhCCc-ccceeeEeeeccHHHH
Q psy16633 167 SSLEIVIIDEADLVFSFG-YEDDMKAVLKFLPK-LYQAILASATLSEDVL 214 (540)
Q Consensus 167 ~~l~~lViDEah~l~~~~-~~~~l~~i~~~l~~-~~q~il~SATl~~~~~ 214 (540)
.++++||||++|.+.... ....+..++..+.. +.++|+.|-..+..+.
T Consensus 376 ~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~ 425 (617)
T PRK14086 376 REMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLV 425 (617)
T ss_pred hcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhh
Confidence 557899999999776543 23455556655543 4567766655555443
No 267
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.78 E-value=0.19 Score=52.34 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=17.6
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHH
Q psy16633 56 KDVLVRARTGSGKTGAFAIPMIQKI 80 (540)
Q Consensus 56 kd~li~a~TGsGKT~a~~ipil~~l 80 (540)
.++++.||+|+|||.. +-.++..+
T Consensus 56 ~~~lI~G~~GtGKT~l-~~~v~~~l 79 (394)
T PRK00411 56 LNVLIYGPPGTGKTTT-VKKVFEEL 79 (394)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHH
Confidence 5699999999999974 33344444
No 268
>KOG0991|consensus
Probab=94.76 E-value=0.071 Score=49.93 Aligned_cols=44 Identities=20% Similarity=0.348 Sum_probs=32.1
Q ss_pred CCccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEeeeccH
Q psy16633 167 SSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSE 211 (540)
Q Consensus 167 ~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~SATl~~ 211 (540)
.+.+++|+||||.|.+ |-...++..++...+.+++.+...+-..
T Consensus 112 grhKIiILDEADSMT~-gAQQAlRRtMEiyS~ttRFalaCN~s~K 155 (333)
T KOG0991|consen 112 GRHKIIILDEADSMTA-GAQQALRRTMEIYSNTTRFALACNQSEK 155 (333)
T ss_pred CceeEEEeeccchhhh-HHHHHHHHHHHHHcccchhhhhhcchhh
Confidence 6778999999998865 4566777777777777776665555443
No 269
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=94.74 E-value=0.16 Score=52.34 Aligned_cols=51 Identities=27% Similarity=0.415 Sum_probs=36.6
Q ss_pred cCCCCHHHHHHHHHCCCCCChHHHH--------HHHHHHhcCCcEEEEcCCCchHHHHHH
Q psy16633 22 TFTLFCIPLQAIAKLGWLEPTLIQE--------RAIPLILQNKDVLVRARTGSGKTGAFA 73 (540)
Q Consensus 22 ~~~L~~~i~~~l~~~g~~~pt~~Q~--------~ai~~il~gkd~li~a~TGsGKT~a~~ 73 (540)
.|..++++---+...|+ .|+.+.. ..+|.+.++.|++..+|+|+|||..|.
T Consensus 169 ~FT~dEWid~LlrSiG~-~P~~~~~r~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~ 227 (449)
T TIGR02688 169 EFTLEEWIDVLIRSIGY-EPEGFEARQKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYN 227 (449)
T ss_pred hcCHHHHHHHHHHhcCC-CcccCChHHHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHH
Confidence 55667787777788888 4543221 223677788999999999999996554
No 270
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=94.71 E-value=0.12 Score=57.41 Aligned_cols=83 Identities=14% Similarity=0.169 Sum_probs=66.6
Q ss_pred HHHHhcccCCcEEEEecChhhHHHHHHHHHh----CCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCccc
Q psy16633 258 TLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQ----FKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQI 333 (540)
Q Consensus 258 ~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~----~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~ 333 (540)
.++.....+.+++|.+|++.-|...+..+++ .|++++.++|+++..+|..++....+|..+|+|+|..
T Consensus 276 ~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~-------- 347 (630)
T TIGR00643 276 AMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHA-------- 347 (630)
T ss_pred HHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHH--------
Confidence 3343333466899999999988887766654 4799999999999999999999999999999999983
Q ss_pred ccccccccccCccccccccCCCCCcCEEE
Q psy16633 334 NSTNNRKRKRDKESGVSRGIDFQFVSNVI 362 (540)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi 362 (540)
.+...+++.++.+||
T Consensus 348 --------------ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 348 --------------LIQEKVEFKRLALVI 362 (630)
T ss_pred --------------HHhccccccccceEE
Confidence 444567777888776
No 271
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=94.69 E-value=0.15 Score=48.59 Aligned_cols=44 Identities=11% Similarity=0.113 Sum_probs=25.6
Q ss_pred CCccEEEEcCccccccCCcHHHHHHHHHhCCcccc-eeeEeeeccH
Q psy16633 167 SSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQ-AILASATLSE 211 (540)
Q Consensus 167 ~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q-~il~SATl~~ 211 (540)
...++|||||+|.+... -...+..++........ +++++++.++
T Consensus 89 ~~~~~liiDdi~~l~~~-~~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 89 PEAELYAVDDVERLDDA-QQIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred ccCCEEEEeChhhcCch-HHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 34668999999976443 23444445544333333 4666666543
No 272
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.66 E-value=0.091 Score=48.32 Aligned_cols=145 Identities=14% Similarity=0.201 Sum_probs=80.7
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHH-HHHHHHHHHHHHhhcCCCceEEEeecCcc
Q psy16633 54 QNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKEL-CNQLHKNIQELTMKCSRDVKCVDISEQVD 132 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~L-a~q~~~~l~~l~~~~~~~i~~~~~~~~~~ 132 (540)
....+.+..++|-|||.+++--++..+ ..+.+|+++-=.+-- ...=...++. ++ .+.......+..
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~--------g~G~~V~ivQFlKg~~~~GE~~~l~~----l~-~v~~~~~g~~~~ 87 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAV--------GHGKKVGVVQFIKGAWSTGERNLLEF----GG-GVEFHVMGTGFT 87 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHH--------HCCCeEEEEEEecCCCccCHHHHHhc----CC-CcEEEECCCCCc
Confidence 456899999999999998766666555 467788887422211 0000112222 11 233222211111
Q ss_pred cccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCCcH--HHHHHHHHhCCcccceeeEeeecc
Q psy16633 133 VSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYE--DDMKAVLKFLPKLYQAILASATLS 210 (540)
Q Consensus 133 ~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~~--~~l~~i~~~l~~~~q~il~SATl~ 210 (540)
... ...+--.......+...... +.- ..+++||+||+=..+++|+- +++..++...|...-+|+.--..|
T Consensus 88 ~~~------~~~~e~~~~~~~~~~~a~~~-l~~-~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 88 WET------QDRERDIAAAREGWEEAKRM-LAD-ESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred ccC------CCcHHHHHHHHHHHHHHHHH-HhC-CCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 000 00000000111112222211 111 57899999999999988854 677788888888888888888888
Q ss_pred HHHHHHHHH
Q psy16633 211 EDVLSLKHL 219 (540)
Q Consensus 211 ~~~~~~~~~ 219 (540)
+++...+..
T Consensus 160 ~~Lie~ADl 168 (191)
T PRK05986 160 RELIEAADL 168 (191)
T ss_pred HHHHHhCch
Confidence 887766554
No 273
>PRK05580 primosome assembly protein PriA; Validated
Probab=94.60 E-value=0.2 Score=56.04 Aligned_cols=59 Identities=17% Similarity=0.241 Sum_probs=54.5
Q ss_pred CCcEEEEecChhhHHHHHHHHHh-CCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCC
Q psy16633 266 QGKTIIFVNTVDKCYKLKLYLEQ-FKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324 (540)
Q Consensus 266 ~~k~IIF~~s~~~~~~l~~~L~~-~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~ 324 (540)
++++||.++++..+..+...|++ +|..+..+||+++..+|.........|..+|+|+|.
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTr 249 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGAR 249 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEecc
Confidence 56899999999999999998876 688999999999999999999999999999999997
No 274
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.60 E-value=0.17 Score=50.60 Aligned_cols=66 Identities=26% Similarity=0.394 Sum_probs=43.3
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHh-cCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHH
Q psy16633 30 LQAIAKLGWLEPTLIQERAIPLIL-QNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKEL 103 (540)
Q Consensus 30 ~~~l~~~g~~~pt~~Q~~ai~~il-~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~L 103 (540)
+..+.+.|. +++-|...+..+. .+++++|+++||||||. ++-.++..+-. .....+++++=.+.|+
T Consensus 108 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTT-ll~al~~~i~~-----~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 108 LDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTT-LANALLAEIAK-----NDPTDRVVIIEDTREL 174 (299)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHHhhc-----cCCCceEEEECCchhh
Confidence 455555665 4555666665544 46789999999999997 44555555422 1235678888777776
No 275
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.59 E-value=0.54 Score=46.08 Aligned_cols=69 Identities=14% Similarity=0.168 Sum_probs=37.1
Q ss_pred ChHHHHHHHhcCcCCccCCccEEEEcCccccccC-CcHHHHHHHHHhCCcccceeeEeeecc-HHHHHHHHHh
Q psy16633 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSF-GYEDDMKAVLKFLPKLYQAILASATLS-EDVLSLKHLI 220 (540)
Q Consensus 150 Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~-~~~~~l~~i~~~l~~~~q~il~SATl~-~~~~~~~~~~ 220 (540)
+|..+.+.+..-.. . ...++++||-+=+.... ..-..+..++....+..-++.+|||.. .+.....+.+
T Consensus 138 ~~~~l~~~l~~l~~-~-~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~~f 208 (270)
T PRK06731 138 DEAAMTRALTYFKE-E-ARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNF 208 (270)
T ss_pred CHHHHHHHHHHHHh-c-CCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHHHh
Confidence 56655554432111 1 46789999988754321 122334444444433334667999865 4565555544
No 276
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=94.55 E-value=0.1 Score=59.01 Aligned_cols=72 Identities=19% Similarity=0.264 Sum_probs=54.2
Q ss_pred CCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHh
Q psy16633 39 LEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTM 116 (540)
Q Consensus 39 ~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~ 116 (540)
..+++-|++|+.. ....++|.|..|||||.+..--+.. ++... ...+.++|+++-|+..|..+.+.+.++..
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~-Li~~~---~i~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAH-LIAEK---NVAPWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHH-HHHcC---CCCHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 4589999999964 3467999999999999875544443 43321 13457899999999999999988887654
No 277
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.53 E-value=0.57 Score=47.93 Aligned_cols=19 Identities=26% Similarity=0.431 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCchHHHHHH
Q psy16633 55 NKDVLVRARTGSGKTGAFA 73 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a~~ 73 (540)
++-+++.+|||+|||....
T Consensus 206 ~~ii~lvGptGvGKTTt~a 224 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLV 224 (407)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568899999999997543
No 278
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=94.52 E-value=0.034 Score=50.60 Aligned_cols=124 Identities=22% Similarity=0.281 Sum_probs=51.4
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchh
Q psy16633 59 LVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEP 138 (540)
Q Consensus 59 li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~ 138 (540)
++.|+-|-|||.+.-+.+.+.+ .....+++|.+|+.+-++.+++.+..-....+...+. .........
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~-------~~~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~-----~~~~~~~~~ 68 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALI-------QKGKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEK-----KKRIGQIIK 68 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSS-------S-----EEEE-SS--S-HHHHHCC---------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHH-------HhcCceEEEecCCHHHHHHHHHHHHhhcccccccccc-----ccccccccc
Confidence 5789999999986555433222 1223689999999988777777655443322111100 000000000
Q ss_pred hhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEeeecc
Q psy16633 139 LLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLS 210 (540)
Q Consensus 139 ~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~SATl~ 210 (540)
.......|-+..|+.+... ....+++|||||=.+. -..+..++.. ...++||.|..
T Consensus 69 ~~~~~~~i~f~~Pd~l~~~--------~~~~DlliVDEAAaIp----~p~L~~ll~~----~~~vv~stTi~ 124 (177)
T PF05127_consen 69 LRFNKQRIEFVAPDELLAE--------KPQADLLIVDEAAAIP----LPLLKQLLRR----FPRVVFSTTIH 124 (177)
T ss_dssp ----CCC--B--HHHHCCT------------SCEEECTGGGS-----HHHHHHHHCC----SSEEEEEEEBS
T ss_pred cccccceEEEECCHHHHhC--------cCCCCEEEEechhcCC----HHHHHHHHhh----CCEEEEEeecc
Confidence 1112456777787765321 1345889999998542 2344444332 33567777864
No 279
>KOG0298|consensus
Probab=94.51 E-value=0.19 Score=57.54 Aligned_cols=155 Identities=19% Similarity=0.136 Sum_probs=94.0
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHhhcc----------cccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceE
Q psy16633 55 NKDVLVRARTGSGKTGAFAIPMIQKIINLKQ----------TAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKC 124 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a~~ipil~~l~~~~~----------~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~ 124 (540)
|+++++.-..|+|||.+-+.-.+..+-+... .....-+.+|||+|. ++..||.+.+...+.. .+.+
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~---~lKv 449 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISS---LLKV 449 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhccc---cceE
Confidence 5678888899999999876665544321110 111234568999996 5568988888876543 3455
Q ss_pred EEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcC--------------cCCccCCc-----cEEEEcCccccccCCc
Q psy16633 125 VDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAK--------------TLDLKSSL-----EIVIIDEADLVFSFGY 185 (540)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~--------------~~~~~~~l-----~~lViDEah~l~~~~~ 185 (540)
....|=...........-.+|||++|+..|..-+... ...+.+.+ =-|++|||+.+-+ -
T Consensus 450 ~~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves--s 527 (1394)
T KOG0298|consen 450 LLYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES--S 527 (1394)
T ss_pred EEEechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc--h
Confidence 5444433222222233357899999999987655321 11111221 1368999996655 3
Q ss_pred HHHHHHHHHhCCcccceeeEeeeccHHHHHH
Q psy16633 186 EDDMKAVLKFLPKLYQAILASATLSEDVLSL 216 (540)
Q Consensus 186 ~~~l~~i~~~l~~~~q~il~SATl~~~~~~~ 216 (540)
.....+...+++. ...-++|+|+-..+..+
T Consensus 528 sS~~a~M~~rL~~-in~W~VTGTPiq~Iddl 557 (1394)
T KOG0298|consen 528 SSAAAEMVRRLHA-INRWCVTGTPIQKIDDL 557 (1394)
T ss_pred HHHHHHHHHHhhh-hceeeecCCchhhhhhh
Confidence 4556666666764 35778899975545443
No 280
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=94.47 E-value=0.25 Score=49.61 Aligned_cols=43 Identities=19% Similarity=0.315 Sum_probs=31.6
Q ss_pred CCChHHHHHHHHHHhc----CC---cEEEEcCCCchHHHHHHHHHHHHHHh
Q psy16633 39 LEPTLIQERAIPLILQ----NK---DVLVRARTGSGKTGAFAIPMIQKIIN 82 (540)
Q Consensus 39 ~~pt~~Q~~ai~~il~----gk---d~li~a~TGsGKT~a~~ipil~~l~~ 82 (540)
..+.|||..++..+.+ |+ -.++.||.|+||+.. ...+.+.++.
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~l-A~~lA~~LlC 52 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAV-ALALAEHVLA 52 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHH-HHHHHHHHhC
Confidence 4678899998877663 43 489999999999974 4445566654
No 281
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=94.46 E-value=0.081 Score=53.49 Aligned_cols=41 Identities=15% Similarity=0.112 Sum_probs=29.6
Q ss_pred ChHHHHHHHHHHhcCC----cEEEEcCCCchHHHHHHHHHHHHHHh
Q psy16633 41 PTLIQERAIPLILQNK----DVLVRARTGSGKTGAFAIPMIQKIIN 82 (540)
Q Consensus 41 pt~~Q~~ai~~il~gk----d~li~a~TGsGKT~a~~ipil~~l~~ 82 (540)
..|||...+..+.+.. -.++.||.|.|||.. ...+.+.++.
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~-A~~~A~~llC 48 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRAL-AERLAAALLC 48 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHH-HHHHHHHHcC
Confidence 4688888888877643 488999999999974 3344455543
No 282
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=94.43 E-value=0.29 Score=52.03 Aligned_cols=89 Identities=21% Similarity=0.206 Sum_probs=58.9
Q ss_pred CHHHHHHHHHCCCCCChH----HHHHHHHHHhc--CCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcC
Q psy16633 26 FCIPLQAIAKLGWLEPTL----IQERAIPLILQ--NKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSP 99 (540)
Q Consensus 26 ~~~i~~~l~~~g~~~pt~----~Q~~ai~~il~--gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~P 99 (540)
++-+...|+++--..++. +|.+-=..+.. ++-++|++..|||||.+++=-+.-.++.-++ .-++..+||+.|
T Consensus 191 dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~--~l~~k~vlvl~P 268 (747)
T COG3973 191 DEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRG--PLQAKPVLVLGP 268 (747)
T ss_pred HHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhcccc--ccccCceEEEcC
Confidence 344566777776666654 45554444544 4559999999999998765444433333221 123445999999
Q ss_pred cHHHHHHHHHHHHHHHh
Q psy16633 100 SKELCNQLHKNIQELTM 116 (540)
Q Consensus 100 t~~La~q~~~~l~~l~~ 116 (540)
.+-...-+.+++-.++.
T Consensus 269 N~vFleYis~VLPeLGe 285 (747)
T COG3973 269 NRVFLEYISRVLPELGE 285 (747)
T ss_pred cHHHHHHHHHhchhhcc
Confidence 99998888888877753
No 283
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.39 E-value=0.41 Score=47.90 Aligned_cols=47 Identities=9% Similarity=0.240 Sum_probs=26.4
Q ss_pred CCccEEEEcCccccc--cCCcHHHHHHHHHh-CCcccceeeEeeeccHHH
Q psy16633 167 SSLEIVIIDEADLVF--SFGYEDDMKAVLKF-LPKLYQAILASATLSEDV 213 (540)
Q Consensus 167 ~~l~~lViDEah~l~--~~~~~~~l~~i~~~-l~~~~q~il~SATl~~~~ 213 (540)
...++|||||..... +|...+.+..|+.. +.....+++.|--..+++
T Consensus 216 ~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~~el 265 (306)
T PRK08939 216 KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFDFDEL 265 (306)
T ss_pred cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCCHHHH
Confidence 578899999998432 33322334555443 234456666665444433
No 284
>KOG1001|consensus
Probab=94.39 E-value=0.26 Score=54.40 Aligned_cols=139 Identities=16% Similarity=0.150 Sum_probs=76.3
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHHhhc-ccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCccccc
Q psy16633 57 DVLVRARTGSGKTGAFAIPMIQKIINLK-QTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSV 135 (540)
Q Consensus 57 d~li~a~TGsGKT~a~~ipil~~l~~~~-~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~ 135 (540)
..|+.-.-|-|||...+.-++..=...+ ..........||++|+ ++..||...+.+..... ...+....| . .
T Consensus 154 ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~-s~~~qW~~elek~~~~~--~l~v~v~~g--r--~ 226 (674)
T KOG1001|consen 154 GGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPT-SLLTQWKTELEKVTEED--KLSIYVYHG--R--T 226 (674)
T ss_pred cceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecch-HHHHHHHHHHhccCCcc--ceEEEEecc--c--c
Confidence 4778888899999864433322111100 0001356678888886 56678888775444332 455555555 1 1
Q ss_pred chhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEeeecc
Q psy16633 136 QEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLS 210 (540)
Q Consensus 136 ~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~SATl~ 210 (540)
........++||++|++.+.. ..+. .-.+-.+|+||||.+...... .....-.+...++. .+|+|+.
T Consensus 227 kd~~el~~~dVVltTy~il~~----~~l~-~i~w~Riildea~~ikn~~tq--~~~a~~~L~a~~RW-cLtgtPi 293 (674)
T KOG1001|consen 227 KDKSELNSYDVVLTTYDILKN----SPLV-KIKWLRIVLDEAHTIKNKDTQ--IFKAVCQLDAKYRW-CLTGTPI 293 (674)
T ss_pred cccchhcCCceEEeeHHHhhc----cccc-ceeEEEEEeccccccCCcchH--hhhhheeeccceee-eecCChh
Confidence 111222577899999998764 1111 134457999999988765422 22222223333333 3566654
No 285
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.38 E-value=0.41 Score=46.86 Aligned_cols=32 Identities=28% Similarity=0.422 Sum_probs=24.1
Q ss_pred CChHHHHHHHHHHh----cCC-cEEEEcCCCchHHHH
Q psy16633 40 EPTLIQERAIPLIL----QNK-DVLVRARTGSGKTGA 71 (540)
Q Consensus 40 ~pt~~Q~~ai~~il----~gk-d~li~a~TGsGKT~a 71 (540)
.+++.+.+++..+. .+. .+++.|++|+|||..
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl 59 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTL 59 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH
Confidence 67777777776654 233 588999999999974
No 286
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.36 E-value=0.27 Score=52.88 Aligned_cols=39 Identities=21% Similarity=0.391 Sum_probs=26.5
Q ss_pred CCccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEe
Q psy16633 167 SSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206 (540)
Q Consensus 167 ~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~S 206 (540)
.+.+++||||+|.|....+ ..+.+.++..|..+.+|+.+
T Consensus 118 ~~~kV~iIDE~~~ls~~a~-naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSF-NALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHHH-HHHHHHHhccCCCeEEEEEE
Confidence 5678999999997765443 34555666666666666654
No 287
>PLN03025 replication factor C subunit; Provisional
Probab=94.34 E-value=0.2 Score=50.59 Aligned_cols=38 Identities=26% Similarity=0.343 Sum_probs=24.8
Q ss_pred CCccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeE
Q psy16633 167 SSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILA 205 (540)
Q Consensus 167 ~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~ 205 (540)
...+++||||+|.|.... ...+..+++..+..+.+++.
T Consensus 98 ~~~kviiiDE~d~lt~~a-q~aL~~~lE~~~~~t~~il~ 135 (319)
T PLN03025 98 GRHKIVILDEADSMTSGA-QQALRRTMEIYSNTTRFALA 135 (319)
T ss_pred CCeEEEEEechhhcCHHH-HHHHHHHHhcccCCceEEEE
Confidence 357899999999876533 45556666665555555443
No 288
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.28 E-value=0.068 Score=54.25 Aligned_cols=44 Identities=25% Similarity=0.398 Sum_probs=31.6
Q ss_pred HHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHH
Q psy16633 51 LILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKEL 103 (540)
Q Consensus 51 ~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~L 103 (540)
++..+++++|.++||||||. ++-.++..+ ....+++.+=.+.||
T Consensus 158 ~v~~~~nilI~G~tGSGKTT-ll~aLl~~i--------~~~~rivtiEd~~El 201 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTT-MSKTLISAI--------PPQERLITIEDTLEL 201 (344)
T ss_pred HHHcCCeEEEECCCCccHHH-HHHHHHccc--------CCCCCEEEECCCccc
Confidence 34457899999999999997 444555443 345677777777776
No 289
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.28 E-value=0.16 Score=56.10 Aligned_cols=43 Identities=14% Similarity=0.279 Sum_probs=38.4
Q ss_pred ccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEeeeccH
Q psy16633 169 LEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSE 211 (540)
Q Consensus 169 l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~SATl~~ 211 (540)
.-++|+|.-|++.+......+..++++.|.+...++.|-+-|+
T Consensus 130 pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~ 172 (894)
T COG2909 130 PLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQ 172 (894)
T ss_pred ceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCC
Confidence 3589999999999998899999999999999999999977553
No 290
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.22 E-value=0.092 Score=50.60 Aligned_cols=52 Identities=15% Similarity=0.176 Sum_probs=35.0
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHH
Q psy16633 55 NKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELT 115 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~ 115 (540)
|..++|.|++|+|||...+-.+...+ ..+.+++|++ +.+-..|+.+.+..++
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~--------~~ge~~lyvs-~ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGL--------QMGEPGIYVA-LEEHPVQVRRNMAQFG 72 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHH--------HcCCcEEEEE-eeCCHHHHHHHHHHhC
Confidence 56799999999999974433333333 2467788877 4455667777666654
No 291
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=94.19 E-value=0.16 Score=57.67 Aligned_cols=39 Identities=31% Similarity=0.420 Sum_probs=27.9
Q ss_pred CCccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEe
Q psy16633 167 SSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206 (540)
Q Consensus 167 ~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~S 206 (540)
...+++||||+|.|...+ .+.+.++++..+..+.+||.+
T Consensus 119 ~~~KV~IIDEad~lt~~a-~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQG-FNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred CCceEEEEechhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 678899999999887643 345666666667666666654
No 292
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=94.19 E-value=0.25 Score=50.18 Aligned_cols=39 Identities=10% Similarity=0.343 Sum_probs=24.9
Q ss_pred CCccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEe
Q psy16633 167 SSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206 (540)
Q Consensus 167 ~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~S 206 (540)
...++|||||+|.+.. .....+..++...+..+.+|+.+
T Consensus 124 ~~~~vlilDe~~~l~~-~~~~~L~~~le~~~~~~~~Il~~ 162 (337)
T PRK12402 124 ADYKTILLDNAEALRE-DAQQALRRIMEQYSRTCRFIIAT 162 (337)
T ss_pred CCCcEEEEeCcccCCH-HHHHHHHHHHHhccCCCeEEEEe
Confidence 5567999999997743 23345555666566555655543
No 293
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=94.10 E-value=0.36 Score=43.89 Aligned_cols=143 Identities=20% Similarity=0.294 Sum_probs=80.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHH-HHHHHHHHHhhcCCCceEEEeecCcccccc
Q psy16633 58 VLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQ-LHKNIQELTMKCSRDVKCVDISEQVDVSVQ 136 (540)
Q Consensus 58 ~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q-~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~ 136 (540)
++|....|=|||.+++=-++..+ ..|.++.|+-=.+-=... -...+..+ +..+....+..+..-..+
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~--------GhG~rv~vvQFiKg~~~~GE~~~~~~~----~~~v~~~~~~~g~tw~~~ 98 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRAL--------GHGLRVGVVQFIKGGWKYGEEAALEKF----GLGVEFHGMGEGFTWETQ 98 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHh--------cCCCEEEEEEEeecCcchhHHHHHHhh----ccceeEEecCCceeCCCc
Confidence 67888888899998777777665 678888887422211000 01122222 112332222211111111
Q ss_pred hhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCCcH--HHHHHHHHhCCcccceeeEeeeccHHHH
Q psy16633 137 EPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYE--DDMKAVLKFLPKLYQAILASATLSEDVL 214 (540)
Q Consensus 137 ~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~~--~~l~~i~~~l~~~~q~il~SATl~~~~~ 214 (540)
. ...++ ......+.....-..+ ..+++||+||.-..+.+++- +++..++..-|....+|+.--..|+.+.
T Consensus 99 ~----~~~d~--~aa~~~w~~a~~~l~~--~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~li 170 (198)
T COG2109 99 D----READI--AAAKAGWEHAKEALAD--GKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELI 170 (198)
T ss_pred C----cHHHH--HHHHHHHHHHHHHHhC--CCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHH
Confidence 0 00122 2222222222211111 46899999999999888855 6777788888888788888777888887
Q ss_pred HHHHHh
Q psy16633 215 SLKHLI 220 (540)
Q Consensus 215 ~~~~~~ 220 (540)
+.+.+.
T Consensus 171 e~ADlV 176 (198)
T COG2109 171 ELADLV 176 (198)
T ss_pred HHHHHH
Confidence 776654
No 294
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.08 E-value=0.21 Score=62.11 Aligned_cols=64 Identities=27% Similarity=0.344 Sum_probs=44.6
Q ss_pred CChHHHHHHHHHHhcCC--cEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHH
Q psy16633 40 EPTLIQERAIPLILQNK--DVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQL 107 (540)
Q Consensus 40 ~pt~~Q~~ai~~il~gk--d~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~ 107 (540)
.+++.|++|+..++.+. -++|.+..|+|||... ..++..+... ....+.+++.++||-.-+.++
T Consensus 1019 ~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l-~~~~~~i~~~---~~~~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1019 RLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTML-ESRYKPVLQA---FESEQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhH-HHHHHHHHHH---HHhcCCeEEEEeChHHHHHHH
Confidence 68999999999998764 4788999999999743 1222222110 013577899999997665544
No 295
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.02 E-value=1.7 Score=46.55 Aligned_cols=19 Identities=26% Similarity=0.391 Sum_probs=15.8
Q ss_pred cCCcEEEEcCCCchHHHHH
Q psy16633 54 QNKDVLVRARTGSGKTGAF 72 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~a~ 72 (540)
.|+.+.+.+|||+|||...
T Consensus 349 ~G~vIaLVGPtGvGKTTta 367 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTI 367 (559)
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3567889999999999754
No 296
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=94.02 E-value=0.16 Score=51.35 Aligned_cols=43 Identities=19% Similarity=0.475 Sum_probs=29.9
Q ss_pred HhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHH
Q psy16633 52 ILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKEL 103 (540)
Q Consensus 52 il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~L 103 (540)
+..+++++|+++||||||. ++-.++..+ ....+++.+=-+.||
T Consensus 157 v~~~~nili~G~tgSGKTT-ll~aL~~~i--------p~~~ri~tiEd~~El 199 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTT-FTNAALREI--------PAIERLITVEDAREI 199 (332)
T ss_pred HHcCCcEEEECCCCCCHHH-HHHHHHhhC--------CCCCeEEEecCCCcc
Confidence 3457899999999999997 455555554 345677666555555
No 297
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.98 E-value=0.3 Score=52.54 Aligned_cols=60 Identities=17% Similarity=0.231 Sum_probs=54.4
Q ss_pred cCCcEEEEecChhhHHHHHHHHHh-CCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCC
Q psy16633 265 VQGKTIIFVNTVDKCYKLKLYLEQ-FKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324 (540)
Q Consensus 265 ~~~k~IIF~~s~~~~~~l~~~L~~-~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~ 324 (540)
.++++||.+|++.-+..++..|++ ++..+.++||+++..+|..+.....+|..+|+|+|.
T Consensus 24 ~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTr 84 (505)
T TIGR00595 24 LGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTR 84 (505)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECCh
Confidence 356899999999999999988875 688899999999999999999999999999999997
No 298
>PRK06904 replicative DNA helicase; Validated
Probab=93.95 E-value=0.5 Score=50.37 Aligned_cols=117 Identities=20% Similarity=0.286 Sum_probs=58.2
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEe-ec-Ccc
Q psy16633 55 NKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDI-SE-QVD 132 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~-~~-~~~ 132 (540)
|.=+++.|.||.|||. |++-+...+.. ..+..++|++.- .-..|+..++-.... .+....+ .| ..+
T Consensus 221 G~LiiIaarPg~GKTa-falnia~~~a~------~~g~~Vl~fSlE-Ms~~ql~~Rlla~~s----~v~~~~i~~g~~l~ 288 (472)
T PRK06904 221 SDLIIVAARPSMGKTT-FAMNLCENAAM------ASEKPVLVFSLE-MPAEQIMMRMLASLS----RVDQTKIRTGQNLD 288 (472)
T ss_pred CcEEEEEeCCCCChHH-HHHHHHHHHHH------hcCCeEEEEecc-CCHHHHHHHHHHhhC----CCCHHHhccCCCCC
Confidence 4458899999999997 55555444422 235567776532 233454444333221 1111111 12 111
Q ss_pred cccch------hhhhCCCCEEEE-----ChHHHHHHHhcCcCCccCCccEEEEcCccccccCC
Q psy16633 133 VSVQE------PLLVERPDIVVA-----TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFG 184 (540)
Q Consensus 133 ~~~~~------~~l~~~~~Ivv~-----Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~ 184 (540)
...+. ..+...+++.|. |+..+...++.-.... ..+++||||=.++|...+
T Consensus 289 ~~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~-~~~~lvvIDYLqli~~~~ 350 (472)
T PRK06904 289 QQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYREN-GGLSLIMVDYLQLMRAPG 350 (472)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhC-CCCCEEEEecHHhcCCCC
Confidence 11111 122234556663 5555555443321111 358899999999886443
No 299
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=93.89 E-value=0.44 Score=48.68 Aligned_cols=39 Identities=31% Similarity=0.246 Sum_probs=26.2
Q ss_pred CCccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEe
Q psy16633 167 SSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206 (540)
Q Consensus 167 ~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~S 206 (540)
...+++||||||.|.... .+.+.+.++.-|....++++|
T Consensus 140 g~~rVviIDeAd~l~~~a-anaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNA-ANAILKTLEEPPARALFILIS 178 (351)
T ss_pred CCceEEEEEchhhcCHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 567899999999885443 344555666655555566665
No 300
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=93.88 E-value=0.22 Score=57.24 Aligned_cols=76 Identities=14% Similarity=0.205 Sum_probs=63.5
Q ss_pred cCCcEEEEecChhhHHHHHHHHHh----CCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccccccc
Q psy16633 265 VQGKTIIFVNTVDKCYKLKLYLEQ----FKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRK 340 (540)
Q Consensus 265 ~~~k~IIF~~s~~~~~~l~~~L~~----~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~ 340 (540)
.+.+++|.+||+.-|...+..+.+ +++++..+++..+..++..+++.+..|..+|+|+|..
T Consensus 499 ~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~--------------- 563 (926)
T TIGR00580 499 DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHK--------------- 563 (926)
T ss_pred hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHH---------------
Confidence 456899999999999988877665 4778899999999999999999999999999999972
Q ss_pred cccCccccccccCCCCCcCEEE
Q psy16633 341 RKRDKESGVSRGIDFQFVSNVI 362 (540)
Q Consensus 341 ~~~~~~~~~~~GiD~~~v~~Vi 362 (540)
.+...+.+.++.+||
T Consensus 564 -------ll~~~v~f~~L~llV 578 (926)
T TIGR00580 564 -------LLQKDVKFKDLGLLI 578 (926)
T ss_pred -------HhhCCCCcccCCEEE
Confidence 455567777777766
No 301
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=93.81 E-value=0.15 Score=45.98 Aligned_cols=47 Identities=23% Similarity=0.224 Sum_probs=32.1
Q ss_pred CCccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEeeeccHHHH
Q psy16633 167 SSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSEDVL 214 (540)
Q Consensus 167 ~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~SATl~~~~~ 214 (540)
...+++||||||.|... -...+.+.++.-|.+..++++|..+..-+.
T Consensus 101 ~~~KviiI~~ad~l~~~-a~NaLLK~LEepp~~~~fiL~t~~~~~il~ 147 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEE-AQNALLKTLEEPPENTYFILITNNPSKILP 147 (162)
T ss_dssp SSSEEEEEETGGGS-HH-HHHHHHHHHHSTTTTEEEEEEES-GGGS-H
T ss_pred CCceEEEeehHhhhhHH-HHHHHHHHhcCCCCCEEEEEEECChHHChH
Confidence 57899999999977653 355677777777777777777766554333
No 302
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.81 E-value=0.32 Score=48.16 Aligned_cols=17 Identities=29% Similarity=0.378 Sum_probs=14.3
Q ss_pred CcEEEEcCCCchHHHHH
Q psy16633 56 KDVLVRARTGSGKTGAF 72 (540)
Q Consensus 56 kd~li~a~TGsGKT~a~ 72 (540)
+.+++.+|||+|||...
T Consensus 195 ~vi~~vGptGvGKTTt~ 211 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTL 211 (282)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999753
No 303
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=93.80 E-value=0.29 Score=49.34 Aligned_cols=39 Identities=31% Similarity=0.325 Sum_probs=24.6
Q ss_pred CCccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEe
Q psy16633 167 SSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206 (540)
Q Consensus 167 ~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~S 206 (540)
...++++|||||.|... -...+...+..-+.+..+++.+
T Consensus 108 ~~~kviiidead~mt~~-A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 108 GGYKVVIIDEADKLTED-AANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred CCceEEEeCcHHHHhHH-HHHHHHHHhccCCCCeEEEEEc
Confidence 67899999999977652 2344444444445555555544
No 304
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.78 E-value=0.2 Score=48.25 Aligned_cols=38 Identities=29% Similarity=0.455 Sum_probs=26.5
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEc
Q psy16633 54 QNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLS 98 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~ 98 (540)
.|.-+++.|++|+|||. +++-++..+.. ..+..+++++
T Consensus 12 ~G~l~lI~G~~G~GKT~-~~~~~~~~~~~------~~g~~vly~s 49 (242)
T cd00984 12 PGDLIIIAARPSMGKTA-FALNIAENIAK------KQGKPVLFFS 49 (242)
T ss_pred CCeEEEEEeCCCCCHHH-HHHHHHHHHHH------hCCCceEEEe
Confidence 46679999999999997 44444444332 2367888886
No 305
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.74 E-value=0.086 Score=54.30 Aligned_cols=39 Identities=23% Similarity=0.405 Sum_probs=23.8
Q ss_pred CCccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEe
Q psy16633 167 SSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206 (540)
Q Consensus 167 ~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~S 206 (540)
...+++||||+|.+....+. .+.+.++.-|....+|+.+
T Consensus 118 ~~~kviIIDEa~~l~~~a~n-aLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFN-ALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred CCceEEEEEChhhcCHHHHH-HHHHHHhcCCCCeEEEEEc
Confidence 56789999999987643322 3444444445555555544
No 306
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=93.72 E-value=0.11 Score=51.81 Aligned_cols=60 Identities=15% Similarity=0.231 Sum_probs=44.6
Q ss_pred CCCCCChHHHHHHHHHHhcCC-cEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHH
Q psy16633 36 LGWLEPTLIQERAIPLILQNK-DVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELC 104 (540)
Q Consensus 36 ~g~~~pt~~Q~~ai~~il~gk-d~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La 104 (540)
..|...++-|...+-.+.+++ ++++++.||||||.. + ..+... -...-|+|.+=-|.||-
T Consensus 153 i~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl--L---Nal~~~----i~~~eRvItiEDtaELq 213 (355)
T COG4962 153 IIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL--L---NALSGF----IDSDERVITIEDTAELQ 213 (355)
T ss_pred HHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH--H---HHHHhc----CCCcccEEEEeehhhhc
Confidence 366789999999998888876 999999999999972 2 222221 13445899988888873
No 307
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=93.70 E-value=0.57 Score=52.78 Aligned_cols=45 Identities=20% Similarity=0.206 Sum_probs=27.1
Q ss_pred ccEEEEcCccccccCCc----HHHHHHHHHhCCcccceeeEeeeccHHH
Q psy16633 169 LEIVIIDEADLVFSFGY----EDDMKAVLKFLPKLYQAILASATLSEDV 213 (540)
Q Consensus 169 l~~lViDEah~l~~~~~----~~~l~~i~~~l~~~~q~il~SATl~~~~ 213 (540)
-.+|+|||+|.+...+. ..++..++..+-...++.++.||-+++.
T Consensus 279 ~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~ 327 (758)
T PRK11034 279 NSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEF 327 (758)
T ss_pred CCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHH
Confidence 34899999998875442 2344444443323345666777766554
No 308
>PRK14873 primosome assembly protein PriA; Provisional
Probab=93.69 E-value=0.49 Score=52.43 Aligned_cols=75 Identities=16% Similarity=0.167 Sum_probs=62.3
Q ss_pred ccHHHHHHHHHHhcc-cCCcEEEEecChhhHHHHHHHHHh-CC-CceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCC
Q psy16633 250 DEKATILYTLLKLNL-VQGKTIIFVNTVDKCYKLKLYLEQ-FK-ISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324 (540)
Q Consensus 250 ~~k~~~l~~ll~~~~-~~~k~IIF~~s~~~~~~l~~~L~~-~~-~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~ 324 (540)
..|-+....++.... .++.+||.++.+..+..+...|++ +| ..+.++||+++..+|........+|+.+|+|.|-
T Consensus 171 SGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtR 248 (665)
T PRK14873 171 EDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTR 248 (665)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcc
Confidence 356666555554433 355799999999999999998875 55 6799999999999999999999999999999997
No 309
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=93.65 E-value=0.37 Score=43.67 Aligned_cols=53 Identities=25% Similarity=0.501 Sum_probs=43.4
Q ss_pred CCccEEEEcCccccccCCcH--HHHHHHHHhCCcccceeeEeeeccHHHHHHHHH
Q psy16633 167 SSLEIVIIDEADLVFSFGYE--DDMKAVLKFLPKLYQAILASATLSEDVLSLKHL 219 (540)
Q Consensus 167 ~~l~~lViDEah~l~~~~~~--~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~~ 219 (540)
..+++||+||+=..+++|+- +++..+++..|....+|+..-..|+.+..++..
T Consensus 96 ~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD~ 150 (173)
T TIGR00708 96 PELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELADL 150 (173)
T ss_pred CCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCce
Confidence 57899999999988888854 677788888888888888888888888766553
No 310
>PF05729 NACHT: NACHT domain
Probab=93.64 E-value=0.44 Score=42.43 Aligned_cols=45 Identities=11% Similarity=0.165 Sum_probs=25.8
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCC-eEEEEEcCcHHHHH
Q psy16633 57 DVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQE-TKALVLSPSKELCN 105 (540)
Q Consensus 57 d~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~-~~vlil~Pt~~La~ 105 (540)
-++|.|++|+|||.. +--++..+..... ... ..+++..+.+....
T Consensus 2 ~l~I~G~~G~GKStl-l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 47 (166)
T PF05729_consen 2 VLWISGEPGSGKSTL-LRKLAQQLAEEEP---PPSKFPYPFFFSLRDISD 47 (166)
T ss_pred EEEEECCCCCChHHH-HHHHHHHHHhcCc---ccccceEEEEEeehhhhh
Confidence 378999999999973 4445555544221 111 24455555555544
No 311
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=93.64 E-value=0.42 Score=46.72 Aligned_cols=17 Identities=24% Similarity=0.462 Sum_probs=14.5
Q ss_pred CcEEEEcCCCchHHHHH
Q psy16633 56 KDVLVRARTGSGKTGAF 72 (540)
Q Consensus 56 kd~li~a~TGsGKT~a~ 72 (540)
.++++.||+|+|||..+
T Consensus 43 ~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVA 59 (261)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 46899999999999753
No 312
>KOG1133|consensus
Probab=93.59 E-value=0.99 Score=48.85 Aligned_cols=106 Identities=16% Similarity=0.199 Sum_probs=73.1
Q ss_pred cCCcEEEEecChhhHHHHHHHHHhCCC-------ceEEeCCCCCHHHHHHHHHHHh----cCCccEEEeCCCCccCCccc
Q psy16633 265 VQGKTIIFVNTVDKCYKLKLYLEQFKI-------STCVLNSELPAKARCHAVYQFN----QGLYDVIIASDEKALETPQI 333 (540)
Q Consensus 265 ~~~k~IIF~~s~~~~~~l~~~L~~~~~-------~~~~l~~~l~~~~r~~i~~~F~----~g~~~iLIaT~~~~~~~~~~ 333 (540)
.++-+++|++|.+-...+...+++.|+ +...+-+.-+ -..+++.|. .|.-.+|+|.= +.
T Consensus 628 VPgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVV-GG------ 697 (821)
T KOG1133|consen 628 VPGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVV-GG------ 697 (821)
T ss_pred CCCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEe-cc------
Confidence 568899999999999999998888765 2222322222 345666664 46666777763 22
Q ss_pred ccccccccccCccccccccCCCCC--cCEEEeCCCCCC-----------------------ccc---------chhcccc
Q psy16633 334 NSTNNRKRKRDKESGVSRGIDFQF--VSNVINFDFPLD-----------------------IQC---------YIHRAGR 379 (540)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~GiD~~~--v~~Vi~~d~p~s-----------------------~~~---------yiqr~GR 379 (540)
-+++||||.| .++|+..++|.. -.. .-|-+||
T Consensus 698 --------------KlSEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGR 763 (821)
T KOG1133|consen 698 --------------KLSEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGR 763 (821)
T ss_pred --------------ccccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHH
Confidence 5889999986 667888888731 011 1388999
Q ss_pred ccCCCCCceEEEEec
Q psy16633 380 TARGKNQGTALSFVS 394 (540)
Q Consensus 380 agR~g~~g~~i~~~~ 394 (540)
|-|.-++=.+|.+++
T Consensus 764 AIRH~~DYA~i~LlD 778 (821)
T KOG1133|consen 764 AIRHRKDYASIYLLD 778 (821)
T ss_pred HHhhhccceeEEEeh
Confidence 999877777777775
No 313
>PHA00729 NTP-binding motif containing protein
Probab=93.59 E-value=0.59 Score=44.28 Aligned_cols=73 Identities=12% Similarity=0.154 Sum_probs=36.7
Q ss_pred CEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccC-CcH----HHHHHHHHhCCcccceeeEeeeccHHHHHHHH
Q psy16633 145 DIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSF-GYE----DDMKAVLKFLPKLYQAILASATLSEDVLSLKH 218 (540)
Q Consensus 145 ~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~-~~~----~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~ 218 (540)
..++.+.+.++..+....-.. ...+++||||+-.-.+. .+. .....+...+...++++.+...-++++.....
T Consensus 60 ~~~fid~~~Ll~~L~~a~~~~-~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr 137 (226)
T PHA00729 60 NSYFFELPDALEKIQDAIDND-YRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLR 137 (226)
T ss_pred cEEEEEHHHHHHHHHHHHhcC-CCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHH
Confidence 456666666666664321111 34578999995422221 112 11223344444445666666665555554443
No 314
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=93.59 E-value=0.28 Score=54.28 Aligned_cols=39 Identities=23% Similarity=0.400 Sum_probs=25.4
Q ss_pred CCccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEe
Q psy16633 167 SSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206 (540)
Q Consensus 167 ~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~S 206 (540)
.+.+++||||+|.|....+. .+.++++.-+.+..+|+.+
T Consensus 118 gr~KVIIIDEah~LT~~A~N-ALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFN-AMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred CCceEEEEeChhhCCHHHHH-HHHHHHHhcCCCeEEEEEE
Confidence 56789999999988654433 3444555555555555544
No 315
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.57 E-value=0.081 Score=50.50 Aligned_cols=132 Identities=18% Similarity=0.202 Sum_probs=66.3
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCC-CeEEEEEcCcHHHHHHHHHHHHHHHhhcC-----CCceEEEee
Q psy16633 55 NKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ-ETKALVLSPSKELCNQLHKNIQELTMKCS-----RDVKCVDIS 128 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~-~~~vlil~Pt~~La~q~~~~l~~l~~~~~-----~~i~~~~~~ 128 (540)
|..+++.+++|+|||.-.+--+.+.+ .. +.++++++- .+-..++.+.++.++.... ..+.+....
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~--------~~~ge~vlyvs~-ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~ 89 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGL--------KNFGEKVLYVSF-EEPPEELIENMKSFGWDLEEYEDSGKLKIIDAF 89 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH--------HHHT--EEEEES-SS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESS
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhh--------hhcCCcEEEEEe-cCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecc
Confidence 46799999999999974333333333 23 667777763 3445666666665532110 012221111
Q ss_pred cCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCC----cHHHHHHHHHhCCcccceee
Q psy16633 129 EQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFG----YEDDMKAVLKFLPKLYQAIL 204 (540)
Q Consensus 129 ~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~----~~~~l~~i~~~l~~~~q~il 204 (540)
.... ... -..++.+...+....-. .+.+.+|||-...+.... +...+..+...+.....+.+
T Consensus 90 ~~~~----------~~~--~~~~~~l~~~i~~~i~~--~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~~t~l 155 (226)
T PF06745_consen 90 PERI----------GWS--PNDLEELLSKIREAIEE--LKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRGVTTL 155 (226)
T ss_dssp GGGS----------T-T--SCCHHHHHHHHHHHHHH--HTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTTEEEE
T ss_pred cccc----------ccc--ccCHHHHHHHHHHHHHh--cCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCCCEEE
Confidence 1100 000 22444455444432111 233789999988772222 34556666666655555566
Q ss_pred Eeeec
Q psy16633 205 ASATL 209 (540)
Q Consensus 205 ~SATl 209 (540)
+++..
T Consensus 156 lt~~~ 160 (226)
T PF06745_consen 156 LTSEM 160 (226)
T ss_dssp EEEEE
T ss_pred EEEcc
Confidence 66653
No 316
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.55 E-value=1.2 Score=46.18 Aligned_cols=54 Identities=17% Similarity=0.233 Sum_probs=29.9
Q ss_pred CCccEEEEcCccccc-cCCcHHHHHHHHHhCC---cccceeeEeeeccH-HHHHHHHHh
Q psy16633 167 SSLEIVIIDEADLVF-SFGYEDDMKAVLKFLP---KLYQAILASATLSE-DVLSLKHLI 220 (540)
Q Consensus 167 ~~l~~lViDEah~l~-~~~~~~~l~~i~~~l~---~~~q~il~SATl~~-~~~~~~~~~ 220 (540)
...++|+||=+-+.. +...-..+..++.... +.-.++.+|||... ++......+
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f 356 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAY 356 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 456789999765432 1122234444444431 22356788999876 455555444
No 317
>PF13173 AAA_14: AAA domain
Probab=93.52 E-value=0.5 Score=40.56 Aligned_cols=38 Identities=21% Similarity=0.301 Sum_probs=25.0
Q ss_pred CccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEeee
Q psy16633 168 SLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208 (540)
Q Consensus 168 ~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~SAT 208 (540)
.-.+|+|||+|.+.+ +...+..+.... ++.++++.+..
T Consensus 61 ~~~~i~iDEiq~~~~--~~~~lk~l~d~~-~~~~ii~tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD--WEDALKFLVDNG-PNIKIILTGSS 98 (128)
T ss_pred CCcEEEEehhhhhcc--HHHHHHHHHHhc-cCceEEEEccc
Confidence 456899999998854 566677776655 34566554443
No 318
>PRK04195 replication factor C large subunit; Provisional
Probab=93.52 E-value=0.29 Score=52.46 Aligned_cols=17 Identities=35% Similarity=0.517 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCchHHHH
Q psy16633 55 NKDVLVRARTGSGKTGA 71 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a 71 (540)
.+.+++.||+|+|||..
T Consensus 39 ~~~lLL~GppG~GKTtl 55 (482)
T PRK04195 39 KKALLLYGPPGVGKTSL 55 (482)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 36799999999999974
No 319
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.49 E-value=0.36 Score=51.10 Aligned_cols=57 Identities=21% Similarity=0.318 Sum_probs=35.3
Q ss_pred HHHHhc-----CCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHH
Q psy16633 49 IPLILQ-----NKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQEL 114 (540)
Q Consensus 49 i~~il~-----gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l 114 (540)
+..++. |.-+++.+++|+|||.. ++-++..+. ..+.+++|+.- .+-..|+......+
T Consensus 69 LD~~LgGGi~~Gs~~lI~G~pG~GKTtL-~lq~a~~~a-------~~g~~vlYvs~-Ees~~qi~~ra~rl 130 (446)
T PRK11823 69 LDRVLGGGLVPGSVVLIGGDPGIGKSTL-LLQVAARLA-------AAGGKVLYVSG-EESASQIKLRAERL 130 (446)
T ss_pred HHHHhcCCccCCEEEEEECCCCCCHHHH-HHHHHHHHH-------hcCCeEEEEEc-cccHHHHHHHHHHc
Confidence 445554 34589999999999973 444443332 24668888874 34445665555444
No 320
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.48 E-value=0.061 Score=58.50 Aligned_cols=39 Identities=28% Similarity=0.465 Sum_probs=25.5
Q ss_pred CCccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEe
Q psy16633 167 SSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206 (540)
Q Consensus 167 ~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~S 206 (540)
...+++||||+|.|....+ +.+.+.++.-|...-+|+.+
T Consensus 117 ~~~KVvIIDEah~Lt~~A~-NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAGF-NALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred CCceEEEEECCCcCCHHHH-HHHHHHHhcCCCCeEEEEEe
Confidence 6788999999998765433 34455555555555555544
No 321
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=93.43 E-value=0.74 Score=41.18 Aligned_cols=52 Identities=17% Similarity=0.436 Sum_probs=43.0
Q ss_pred CCccEEEEcCccccccCCc--HHHHHHHHHhCCcccceeeEeeeccHHHHHHHH
Q psy16633 167 SSLEIVIIDEADLVFSFGY--EDDMKAVLKFLPKLYQAILASATLSEDVLSLKH 218 (540)
Q Consensus 167 ~~l~~lViDEah~l~~~~~--~~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~ 218 (540)
..+++||+||+=..+..++ .+++..+++..|...-+|+.+-..|+.+...+.
T Consensus 94 ~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD 147 (159)
T cd00561 94 GEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAAD 147 (159)
T ss_pred CCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCc
Confidence 5789999999998877775 467888888888888899999899988876654
No 322
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.42 E-value=0.2 Score=46.25 Aligned_cols=37 Identities=30% Similarity=0.381 Sum_probs=27.5
Q ss_pred HHHCCCCCChHHHHHHHHHHhc-CCcEEEEcCCCchHHHH
Q psy16633 33 IAKLGWLEPTLIQERAIPLILQ-NKDVLVRARTGSGKTGA 71 (540)
Q Consensus 33 l~~~g~~~pt~~Q~~ai~~il~-gkd~li~a~TGsGKT~a 71 (540)
|-+.|+ .++-|...+....+ |+.+++.+|||||||..
T Consensus 4 l~~~g~--~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 4 LIAQGT--FSPLQAAYLWLAVEARKNILISGGTGSGKTTL 41 (186)
T ss_pred HHHcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 344554 56667777766654 78899999999999973
No 323
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=93.34 E-value=0.7 Score=44.26 Aligned_cols=52 Identities=12% Similarity=0.123 Sum_probs=32.4
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHH
Q psy16633 54 QNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQEL 114 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l 114 (540)
.|.-+++.+++|+|||... .-++..+++ ++.++++++.. +-..+..+.+.++
T Consensus 23 ~g~~~~i~G~~G~GKTtl~-~~~~~~~~~-------~g~~~~yi~~e-~~~~~~~~~~~~~ 74 (230)
T PRK08533 23 AGSLILIEGDESTGKSILS-QRLAYGFLQ-------NGYSVSYVSTQ-LTTTEFIKQMMSL 74 (230)
T ss_pred CCcEEEEECCCCCCHHHHH-HHHHHHHHh-------CCCcEEEEeCC-CCHHHHHHHHHHh
Confidence 4678999999999999743 233333322 45677888743 3334555555444
No 324
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=93.33 E-value=1.2 Score=45.79 Aligned_cols=26 Identities=19% Similarity=0.454 Sum_probs=18.5
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHh
Q psy16633 56 KDVLVRARTGSGKTGAFAIPMIQKIIN 82 (540)
Q Consensus 56 kd~li~a~TGsGKT~a~~ipil~~l~~ 82 (540)
.++++-|+||+|||.+ +--+++.+..
T Consensus 43 ~n~~iyG~~GTGKT~~-~~~v~~~l~~ 68 (366)
T COG1474 43 SNIIIYGPTGTGKTAT-VKFVMEELEE 68 (366)
T ss_pred ccEEEECCCCCCHhHH-HHHHHHHHHh
Confidence 3699999999999985 3334455443
No 325
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=93.27 E-value=0.85 Score=46.85 Aligned_cols=24 Identities=25% Similarity=0.566 Sum_probs=17.9
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHH
Q psy16633 56 KDVLVRARTGSGKTGAFAIPMIQKI 80 (540)
Q Consensus 56 kd~li~a~TGsGKT~a~~ipil~~l 80 (540)
.+++|.||+|+|||.+ +-.++..+
T Consensus 41 ~~i~I~G~~GtGKT~l-~~~~~~~l 64 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAV-TKYVMKEL 64 (365)
T ss_pred CcEEEECCCCCCHHHH-HHHHHHHH
Confidence 5799999999999974 34444444
No 326
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=93.27 E-value=0.55 Score=51.73 Aligned_cols=39 Identities=26% Similarity=0.307 Sum_probs=25.2
Q ss_pred CCccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEe
Q psy16633 167 SSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206 (540)
Q Consensus 167 ~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~S 206 (540)
...+++||||+|.|.... ...+.+.+...+..+.+|+.+
T Consensus 118 gk~KVIIIDEad~Ls~~A-~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred CCcEEEEEECccccCHHH-HHHHHHHHHhCCCCcEEEEEe
Confidence 567899999999765432 234555555556666666655
No 327
>KOG1133|consensus
Probab=93.24 E-value=0.12 Score=55.45 Aligned_cols=42 Identities=21% Similarity=0.253 Sum_probs=35.0
Q ss_pred CChHHHHHHHHHHh----cCCcEEEEcCCCchHHHHHHHHHHHHHH
Q psy16633 40 EPTLIQERAIPLIL----QNKDVLVRARTGSGKTGAFAIPMIQKII 81 (540)
Q Consensus 40 ~pt~~Q~~ai~~il----~gkd~li~a~TGsGKT~a~~ipil~~l~ 81 (540)
+|+.||.+.+..+. +|+--|..+|||+|||+..+-.++..|.
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~ 60 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLR 60 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHH
Confidence 68999998887655 4898999999999999987777776653
No 328
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.21 E-value=0.28 Score=51.80 Aligned_cols=16 Identities=25% Similarity=0.233 Sum_probs=13.9
Q ss_pred EEEEcCCCchHHHHHH
Q psy16633 58 VLVRARTGSGKTGAFA 73 (540)
Q Consensus 58 ~li~a~TGsGKT~a~~ 73 (540)
+++.||.|+|||.++.
T Consensus 43 ~Lf~GP~GtGKTTlAr 58 (484)
T PRK14956 43 YIFFGPRGVGKTTIAR 58 (484)
T ss_pred EEEECCCCCCHHHHHH
Confidence 7999999999998544
No 329
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=93.16 E-value=0.18 Score=46.16 Aligned_cols=44 Identities=18% Similarity=0.424 Sum_probs=26.9
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHH
Q psy16633 54 QNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQ 106 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q 106 (540)
+++++++.|++|+|||.. ...+...+.. .+..++++ +..+|...
T Consensus 46 ~~~~l~l~G~~G~GKThL-a~ai~~~~~~-------~g~~v~f~-~~~~L~~~ 89 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHL-AVAIANEAIR-------KGYSVLFI-TASDLLDE 89 (178)
T ss_dssp C--EEEEEESTTSSHHHH-HHHHHHHHHH-------TT--EEEE-EHHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHH-HHHHHHHhcc-------CCcceeEe-ecCceecc
Confidence 578899999999999974 4445555543 45566664 44555544
No 330
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=93.12 E-value=0.34 Score=54.58 Aligned_cols=71 Identities=23% Similarity=0.351 Sum_probs=55.6
Q ss_pred HHHHHHHHHhcccCCcEEEEecChhhHHHHHHHHHhCC-----CceEE-eCCCCCHHHHHHHHHHHhcCCccEEEeCC
Q psy16633 253 ATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFK-----ISTCV-LNSELPAKARCHAVYQFNQGLYDVIIASD 324 (540)
Q Consensus 253 ~~~l~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~-----~~~~~-l~~~l~~~~r~~i~~~F~~g~~~iLIaT~ 324 (540)
+-++..+.-.. .++++++.+||..-+.+.+..|+++. ..+.+ +||.|+..++..++++|.+|.++|||+|.
T Consensus 113 fg~~~sl~~a~-kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs 189 (1187)
T COG1110 113 FGLLMSLYLAK-KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTS 189 (1187)
T ss_pred HHHHHHHHHHh-cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeH
Confidence 44444444322 35789999999888888777777653 44433 99999999999999999999999999998
No 331
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.10 E-value=0.43 Score=50.61 Aligned_cols=20 Identities=30% Similarity=0.219 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q psy16633 55 NKDVLVRARTGSGKTGAFAI 74 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a~~i 74 (540)
|+-+.+.||||+|||.+...
T Consensus 256 g~Vi~LvGpnGvGKTTTiaK 275 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAK 275 (484)
T ss_pred CcEEEEECCCCccHHHHHHH
Confidence 44588999999999986443
No 332
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=93.09 E-value=0.56 Score=48.28 Aligned_cols=51 Identities=20% Similarity=0.295 Sum_probs=31.3
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHH
Q psy16633 55 NKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQEL 114 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l 114 (540)
|.-+++.+++|+|||.. ++-+...+.. .+.+++|+.-. +-..|+......+
T Consensus 82 GslvLI~G~pG~GKStL-llq~a~~~a~-------~g~~VlYvs~E-Es~~qi~~Ra~rl 132 (372)
T cd01121 82 GSVILIGGDPGIGKSTL-LLQVAARLAK-------RGGKVLYVSGE-ESPEQIKLRADRL 132 (372)
T ss_pred CeEEEEEeCCCCCHHHH-HHHHHHHHHh-------cCCeEEEEECC-cCHHHHHHHHHHc
Confidence 35589999999999973 4444444322 35678888654 3345555444443
No 333
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.09 E-value=0.63 Score=49.54 Aligned_cols=39 Identities=23% Similarity=0.333 Sum_probs=24.5
Q ss_pred CCccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEe
Q psy16633 167 SSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206 (540)
Q Consensus 167 ~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~S 206 (540)
...+++||||+|.+....+ +.+.+.++.-|+...+|+.+
T Consensus 115 ~~~KVvIIDEah~Ls~~A~-NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 115 SKFKVYIIDEVHMLSNSAF-NALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred CCceEEEEeChHhCCHHHH-HHHHHHHhCCCCCeEEEEEe
Confidence 6789999999997755333 33444455555555555443
No 334
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=93.03 E-value=0.95 Score=43.16 Aligned_cols=52 Identities=13% Similarity=0.138 Sum_probs=30.3
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHH
Q psy16633 54 QNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQEL 114 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l 114 (540)
.|..+++.+++|+|||....--+.+.+ . .+..++++.- .+...++.+....+
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~-~-------~g~~~~~is~-e~~~~~i~~~~~~~ 70 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGL-R-------DGDPVIYVTT-EESRESIIRQAAQF 70 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHH-h-------cCCeEEEEEc-cCCHHHHHHHHHHh
Confidence 467799999999999974332233322 2 3556667653 33344554444443
No 335
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=93.00 E-value=0.79 Score=48.17 Aligned_cols=49 Identities=14% Similarity=0.156 Sum_probs=28.5
Q ss_pred ccEEEEcCcccccc-CCcHHHHHHHHHhCCcccceeeEeeeccHHHHHHH
Q psy16633 169 LEIVIIDEADLVFS-FGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLK 217 (540)
Q Consensus 169 l~~lViDEah~l~~-~~~~~~l~~i~~~l~~~~q~il~SATl~~~~~~~~ 217 (540)
.++||||.+-+... ...-+.+..+.....+..-++.++||...+.....
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a 225 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQA 225 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHH
Confidence 37899999954321 12234455555555555567777887765443333
No 336
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=92.84 E-value=0.71 Score=50.80 Aligned_cols=38 Identities=18% Similarity=0.370 Sum_probs=24.1
Q ss_pred CCccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeE
Q psy16633 167 SSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILA 205 (540)
Q Consensus 167 ~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~ 205 (540)
...+++||||+|.|....+. .+.+.++.-|....+|+.
T Consensus 118 g~~KV~IIDEah~Ls~~a~N-ALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHSFN-ALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred CCCEEEEEechHhCCHHHHH-HHHHHHHcCCCCeEEEEe
Confidence 56889999999987654433 344455555555445544
No 337
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=92.82 E-value=0.3 Score=53.41 Aligned_cols=39 Identities=21% Similarity=0.282 Sum_probs=25.8
Q ss_pred CCccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEe
Q psy16633 167 SSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206 (540)
Q Consensus 167 ~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~S 206 (540)
...+++||||+|.|.... .+.+.+.++..|..+.+|+.+
T Consensus 131 a~~KVvIIDEad~Ls~~a-~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 131 ARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred CCcEEEEEEChHhCCHHH-HHHHHHHHHhCCCCeEEEEEe
Confidence 678999999999775433 234444555556666666655
No 338
>CHL00181 cbbX CbbX; Provisional
Probab=92.75 E-value=1.6 Score=43.24 Aligned_cols=18 Identities=22% Similarity=0.290 Sum_probs=14.9
Q ss_pred CCcEEEEcCCCchHHHHH
Q psy16633 55 NKDVLVRARTGSGKTGAF 72 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a~ 72 (540)
|-++++.||+|+|||..+
T Consensus 59 ~~~ill~G~pGtGKT~lA 76 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVA 76 (287)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 345899999999999754
No 339
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=92.72 E-value=0.61 Score=50.60 Aligned_cols=89 Identities=20% Similarity=0.290 Sum_probs=72.8
Q ss_pred HHHHHHHHHhcccCCcEEEEecCh----hhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCcc
Q psy16633 253 ATILYTLLKLNLVQGKTIIFVNTV----DKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKAL 328 (540)
Q Consensus 253 ~~~l~~ll~~~~~~~k~IIF~~s~----~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~ 328 (540)
...+.+++.....+.++..-+||- .+...+..+|..+|+++..+.|.+....|..++....+|.++++|.|-.
T Consensus 298 vVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHA--- 374 (677)
T COG1200 298 VVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHA--- 374 (677)
T ss_pred HHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcch---
Confidence 334455555555677999999994 4566667778888999999999999999999999999999999999983
Q ss_pred CCcccccccccccccCccccccccCCCCCcCEEEe
Q psy16633 329 ETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVIN 363 (540)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~ 363 (540)
.+...++|.+...||.
T Consensus 375 -------------------LiQd~V~F~~LgLVIi 390 (677)
T COG1200 375 -------------------LIQDKVEFHNLGLVII 390 (677)
T ss_pred -------------------hhhcceeecceeEEEE
Confidence 5667889998888873
No 340
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=92.69 E-value=0.48 Score=47.89 Aligned_cols=39 Identities=18% Similarity=0.156 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHhc--CC---cEEEEcCCCchHHHHHHHHHHHHHH
Q psy16633 42 TLIQERAIPLILQ--NK---DVLVRARTGSGKTGAFAIPMIQKII 81 (540)
Q Consensus 42 t~~Q~~ai~~il~--gk---d~li~a~TGsGKT~a~~ipil~~l~ 81 (540)
.|||+.++..+.. |+ -.++.||.|+|||..+ ..+.+.++
T Consensus 3 yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la-~~~a~~ll 46 (325)
T PRK08699 3 YPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFA-RFAAQALL 46 (325)
T ss_pred CCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHH-HHHHHHHc
Confidence 5777777777663 33 4899999999999743 33444444
No 341
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=92.39 E-value=0.48 Score=52.61 Aligned_cols=78 Identities=18% Similarity=0.236 Sum_probs=64.1
Q ss_pred cCcccHHHHHHHHHHhcccC-CcEEEEecChhhHHHHHHHHHh-CCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCC
Q psy16633 247 AQEDEKATILYTLLKLNLVQ-GKTIIFVNTVDKCYKLKLYLEQ-FKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324 (540)
Q Consensus 247 ~~~~~k~~~l~~ll~~~~~~-~k~IIF~~s~~~~~~l~~~L~~-~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~ 324 (540)
+....|-+....++...+.. +.+||-++.+.....+...|+. ||.++.++||+++..+|.....+...|+.+|+|.|-
T Consensus 225 vTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtR 304 (730)
T COG1198 225 VTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTR 304 (730)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEec
Confidence 34455666666655544444 4799999999998888887764 799999999999999999999999999999999997
No 342
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=92.36 E-value=0.6 Score=50.75 Aligned_cols=39 Identities=26% Similarity=0.270 Sum_probs=23.3
Q ss_pred CCccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEe
Q psy16633 167 SSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206 (540)
Q Consensus 167 ~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~S 206 (540)
...+++||||||.|.... ...+...++.-|...-+|+++
T Consensus 118 ~~~KVIIIDEad~Lt~~A-~NaLLKtLEEPp~~tvfIL~T 156 (605)
T PRK05896 118 FKYKVYIIDEAHMLSTSA-WNALLKTLEEPPKHVVFIFAT 156 (605)
T ss_pred CCcEEEEEechHhCCHHH-HHHHHHHHHhCCCcEEEEEEC
Confidence 457889999999775432 234444455445554444444
No 343
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=92.35 E-value=0.4 Score=49.24 Aligned_cols=44 Identities=20% Similarity=0.203 Sum_probs=28.5
Q ss_pred HHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHH
Q psy16633 32 AIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII 81 (540)
Q Consensus 32 ~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~ 81 (540)
.+.++|+. ..+...++ ..+..++|++|||||||. .+-.+++.+.
T Consensus 131 ~l~~lgl~--~~~~~~l~---~~~GlilI~G~TGSGKTT-~l~al~~~i~ 174 (372)
T TIGR02525 131 DLKQMGIE--PDLFNSLL---PAAGLGLICGETGSGKST-LAASIYQHCG 174 (372)
T ss_pred CHHHcCCC--HHHHHHHH---hcCCEEEEECCCCCCHHH-HHHHHHHHHH
Confidence 45667763 33433333 244579999999999997 4556666664
No 344
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=92.34 E-value=0.79 Score=48.26 Aligned_cols=37 Identities=22% Similarity=0.343 Sum_probs=25.0
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEc
Q psy16633 55 NKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLS 98 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~ 98 (540)
|.-+++.|+||+|||. +++-+...+.. ..+..+++++
T Consensus 194 g~liviag~pg~GKT~-~al~ia~~~a~------~~g~~v~~fS 230 (421)
T TIGR03600 194 GDLIVIGARPSMGKTT-LALNIAENVAL------REGKPVLFFS 230 (421)
T ss_pred CceEEEEeCCCCCHHH-HHHHHHHHHHH------hCCCcEEEEE
Confidence 4558999999999997 55555444321 2466777776
No 345
>PRK08840 replicative DNA helicase; Provisional
Probab=92.33 E-value=1.1 Score=47.71 Aligned_cols=114 Identities=21% Similarity=0.291 Sum_probs=54.2
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEe-ecCccc
Q psy16633 55 NKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDI-SEQVDV 133 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~-~~~~~~ 133 (540)
|.=+++.|+||.|||. |.+-+...+.. ..+..++|.+.- .-..|+...+-.... .+....+ .|....
T Consensus 217 g~LiviaarPg~GKTa-falnia~~~a~------~~~~~v~~fSlE-Ms~~ql~~Rlla~~s----~v~~~~i~~~~l~~ 284 (464)
T PRK08840 217 SDLIIVAARPSMGKTT-FAMNLCENAAM------DQDKPVLIFSLE-MPAEQLMMRMLASLS----RVDQTKIRTGQLDD 284 (464)
T ss_pred CceEEEEeCCCCchHH-HHHHHHHHHHH------hCCCeEEEEecc-CCHHHHHHHHHHhhC----CCCHHHHhcCCCCH
Confidence 4458899999999997 44444444321 235667777532 223444443322211 1111111 111111
Q ss_pred ccch------hhhhCCCCEEEE-----ChHHHHHHHhcCcCCccCCccEEEEcCccccc
Q psy16633 134 SVQE------PLLVERPDIVVA-----TPARALAHLKAKTLDLKSSLEIVIIDEADLVF 181 (540)
Q Consensus 134 ~~~~------~~l~~~~~Ivv~-----Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~ 181 (540)
..+. ..+.....+.|. |+..+...++.-.... ..+++||||=.|+|.
T Consensus 285 ~e~~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~-~~~~lvvIDYLql~~ 342 (464)
T PRK08840 285 EDWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREH-GGLSMIMVDYLQLMR 342 (464)
T ss_pred HHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhc-CCCCEEEEccHHhcC
Confidence 1111 112123445553 3444444333322111 358899999999875
No 346
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=92.30 E-value=0.73 Score=46.44 Aligned_cols=41 Identities=12% Similarity=0.057 Sum_probs=25.9
Q ss_pred CCccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEeee
Q psy16633 167 SSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208 (540)
Q Consensus 167 ~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~SAT 208 (540)
...+++|||+||.|.... ...+.+.++.=|...-+|+.|..
T Consensus 106 g~~KV~iI~~a~~m~~~A-aNaLLKtLEEPp~~~~fiL~t~~ 146 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAA-ANALLKTLEEPRPNTYFLLQADL 146 (325)
T ss_pred CCceEEEEechhhhCHHH-HHHHHHHhcCCCCCeEEEEEECC
Confidence 678999999999886543 34444555554555555555443
No 347
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=92.23 E-value=0.23 Score=51.50 Aligned_cols=43 Identities=21% Similarity=0.230 Sum_probs=25.3
Q ss_pred CCccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEeeeccH
Q psy16633 167 SSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSE 211 (540)
Q Consensus 167 ~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~SATl~~ 211 (540)
.+.+++||||+|.|.... ...+.+.++.-|... ++++.+|-+.
T Consensus 116 ~~~kViiIDead~m~~~a-anaLLk~LEep~~~~-~fIL~a~~~~ 158 (394)
T PRK07940 116 GRWRIVVIEDADRLTERA-ANALLKAVEEPPPRT-VWLLCAPSPE 158 (394)
T ss_pred CCcEEEEEechhhcCHHH-HHHHHHHhhcCCCCC-eEEEEECChH
Confidence 567899999999886543 233444444444444 4444444443
No 348
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=92.17 E-value=0.48 Score=46.21 Aligned_cols=141 Identities=18% Similarity=0.143 Sum_probs=69.0
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEee-cCccc
Q psy16633 55 NKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDIS-EQVDV 133 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~-~~~~~ 133 (540)
|.=+++.|+||.|||. |++-+...+.. ..+..++|++.--. ..++...+-...... ....+. |....
T Consensus 19 g~L~vi~a~pg~GKT~-~~l~ia~~~a~------~~~~~vly~SlEm~-~~~l~~R~la~~s~v----~~~~i~~g~l~~ 86 (259)
T PF03796_consen 19 GELTVIAARPGVGKTA-FALQIALNAAL------NGGYPVLYFSLEMS-EEELAARLLARLSGV----PYNKIRSGDLSD 86 (259)
T ss_dssp T-EEEEEESTTSSHHH-HHHHHHHHHHH------TTSSEEEEEESSS--HHHHHHHHHHHHHTS----THHHHHCCGCHH
T ss_pred CcEEEEEecccCCchH-HHHHHHHHHHH------hcCCeEEEEcCCCC-HHHHHHHHHHHhhcc----hhhhhhccccCH
Confidence 3458999999999997 55555555543 23578888875311 223333332222111 111111 11111
Q ss_pred ccch------hhhhCCCCEEEE----ChHHHHHHHhcCcCCccCCccEEEEcCccccccC----CcHHHHHHHHHhCC--
Q psy16633 134 SVQE------PLLVERPDIVVA----TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSF----GYEDDMKAVLKFLP-- 197 (540)
Q Consensus 134 ~~~~------~~l~~~~~Ivv~----Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~----~~~~~l~~i~~~l~-- 197 (540)
.... ..+...+-.+.. |++.+.+.+..-.... ..+++||||=.|.+... +....+..+...+.
T Consensus 87 ~e~~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~-~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~l 165 (259)
T PF03796_consen 87 EEFERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKREG-KKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKAL 165 (259)
T ss_dssp HHHHHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHS-TTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhc-cCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHH
Confidence 1111 112222222233 4455665554432222 57889999999988764 34444555443332
Q ss_pred -c--ccceeeEeee
Q psy16633 198 -K--LYQAILASAT 208 (540)
Q Consensus 198 -~--~~q~il~SAT 208 (540)
. ++.++++|..
T Consensus 166 A~~~~i~vi~~sQl 179 (259)
T PF03796_consen 166 AKELNIPVIALSQL 179 (259)
T ss_dssp HHHHTSEEEEEEEB
T ss_pred HHHcCCeEEEcccc
Confidence 1 3455555554
No 349
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.16 E-value=0.51 Score=51.61 Aligned_cols=39 Identities=15% Similarity=0.382 Sum_probs=25.2
Q ss_pred CCccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEe
Q psy16633 167 SSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206 (540)
Q Consensus 167 ~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~S 206 (540)
...+++||||+|.|....+ ..+.++++.-|....+|+.+
T Consensus 117 gk~KV~IIDEVh~LS~~A~-NALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSF-NALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred CCcEEEEEechHhcCHHHH-HHHHHHHhcCCCCcEEEEEE
Confidence 4678999999997765433 34555566556555555543
No 350
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=92.12 E-value=1.1 Score=45.03 Aligned_cols=59 Identities=15% Similarity=0.165 Sum_probs=33.7
Q ss_pred EEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEeee
Q psy16633 146 IVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208 (540)
Q Consensus 146 Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~SAT 208 (540)
|-|-....+.+.+...+.. ...+++|||+||.|.... ...+.++++.-| ...+|++|..
T Consensus 104 I~id~ir~i~~~l~~~p~~--~~~kVvII~~ae~m~~~a-aNaLLK~LEEPp-~~~fILi~~~ 162 (314)
T PRK07399 104 IRLEQIREIKRFLSRPPLE--APRKVVVIEDAETMNEAA-ANALLKTLEEPG-NGTLILIAPS 162 (314)
T ss_pred CcHHHHHHHHHHHccCccc--CCceEEEEEchhhcCHHH-HHHHHHHHhCCC-CCeEEEEECC
Confidence 3333333444444444333 678999999999885432 344555555555 5555555543
No 351
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.04 E-value=0.36 Score=52.67 Aligned_cols=40 Identities=23% Similarity=0.404 Sum_probs=25.7
Q ss_pred CCccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEee
Q psy16633 167 SSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207 (540)
Q Consensus 167 ~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~SA 207 (540)
.+.+++||||+|.|....+. .+.+.++.-+.++.+|+.|-
T Consensus 123 gr~KViIIDEah~Ls~~AaN-ALLKTLEEPP~~v~FILaTt 162 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNHAFN-AMLKTLEEPPEHVKFILATT 162 (700)
T ss_pred CCceEEEEEChHhcCHHHHH-HHHHhhccCCCCceEEEEeC
Confidence 56889999999988654443 33344444455666666554
No 352
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=92.03 E-value=0.23 Score=45.48 Aligned_cols=104 Identities=16% Similarity=0.161 Sum_probs=59.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCce-EEEeecCccc
Q psy16633 55 NKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVK-CVDISEQVDV 133 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~-~~~~~~~~~~ 133 (540)
|+=.++.+|.+||||.. ++-.+..+ ...+.++++..|-..- .+ +.. +..-.|.
T Consensus 4 g~l~~i~gpM~SGKT~e-Ll~r~~~~-------~~~g~~v~vfkp~iD~---------R~------~~~~V~Sr~G~--- 57 (201)
T COG1435 4 GWLEFIYGPMFSGKTEE-LLRRARRY-------KEAGMKVLVFKPAIDT---------RY------GVGKVSSRIGL--- 57 (201)
T ss_pred EEEEEEEccCcCcchHH-HHHHHHHH-------HHcCCeEEEEeccccc---------cc------ccceeeeccCC---
Confidence 44568999999999974 22222222 2468889998884221 00 111 1111111
Q ss_pred ccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCCcHHHHHHHHHh
Q psy16633 134 SVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKF 195 (540)
Q Consensus 134 ~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~ 195 (540)
+.+-++|-.+..+.+.+....... .+++|.||||+ .++...-..+..+...
T Consensus 58 --------~~~A~~i~~~~~i~~~i~~~~~~~--~~~~v~IDEaQ-F~~~~~v~~l~~lad~ 108 (201)
T COG1435 58 --------SSEAVVIPSDTDIFDEIAALHEKP--PVDCVLIDEAQ-FFDEELVYVLNELADR 108 (201)
T ss_pred --------cccceecCChHHHHHHHHhcccCC--CcCEEEEehhH-hCCHHHHHHHHHHHhh
Confidence 234567778888888887654432 38899999999 3343333444444443
No 353
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.02 E-value=0.081 Score=59.46 Aligned_cols=38 Identities=18% Similarity=0.280 Sum_probs=23.9
Q ss_pred CCccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeE
Q psy16633 167 SSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILA 205 (540)
Q Consensus 167 ~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~ 205 (540)
...+++||||||.|.... ...+.++++.-|..+.+|+.
T Consensus 118 gk~KViIIDEAh~LT~eA-qNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSS-FNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhccCCCeEEEEE
Confidence 567899999999775432 23444455555555555554
No 354
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=91.96 E-value=0.31 Score=45.94 Aligned_cols=16 Identities=31% Similarity=0.339 Sum_probs=13.9
Q ss_pred cEEEEcCCCchHHHHH
Q psy16633 57 DVLVRARTGSGKTGAF 72 (540)
Q Consensus 57 d~li~a~TGsGKT~a~ 72 (540)
++++.||+|+|||..+
T Consensus 52 h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLA 67 (233)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred eEEEECCCccchhHHH
Confidence 5999999999999743
No 355
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=91.93 E-value=0.37 Score=48.96 Aligned_cols=63 Identities=21% Similarity=0.300 Sum_probs=41.4
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHhc-CCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHH
Q psy16633 30 LQAIAKLGWLEPTLIQERAIPLILQ-NKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKEL 103 (540)
Q Consensus 30 ~~~l~~~g~~~pt~~Q~~ai~~il~-gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~L 103 (540)
+..+.+.|+ .++.+...+..+.+ ++++++.++||||||. ++-.++..+ ....+++++--+.||
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTT-ll~al~~~i--------~~~~riv~iEd~~El 217 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTT-LLSALLALV--------APDERIVLVEDAAEL 217 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHccC--------CCCCcEEEECCccee
Confidence 555666676 45566666665554 6799999999999997 333333332 244567777766666
No 356
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=91.89 E-value=3.6 Score=41.86 Aligned_cols=145 Identities=15% Similarity=0.176 Sum_probs=60.9
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHhhcccccCCC-eEEEEEcCcHHHHHH-HHH---HHHHHHhhcCCCceEEEeecCccc
Q psy16633 59 LVRARTGSGKTGAFAIPMIQKIINLKQTAQVQE-TKALVLSPSKELCNQ-LHK---NIQELTMKCSRDVKCVDISEQVDV 133 (540)
Q Consensus 59 li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~-~~vlil~Pt~~La~q-~~~---~l~~l~~~~~~~i~~~~~~~~~~~ 133 (540)
++.++.|+|||.+..+.++..++. .++ ..++++ ||..-+.. +.. .+..+... ...+........ ..
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~------~~~~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~ 71 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALT------RPPGRRVIIA-STYRQARDIFGRFWKGIIELLPS-WFEIKFNEWNDR-KI 71 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHS------SSS--EEEEE-ESSHHHHHHHHHHHHHHHHTS-T-TTS--EEEE-SS-EE
T ss_pred CCcCCccccHHHHHHHHHHHHHhh------CCCCcEEEEe-cCHHHHHHHHHHhHHHHHHHHHH-hcCcccccCCCC-cE
Confidence 477899999999877777776654 233 455555 66554444 333 22222222 111221111111 00
Q ss_pred ccchhhhhCCCCEEEEChHH--HHHHHhcCcCCccCCccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEeeec--
Q psy16633 134 SVQEPLLVERPDIVVATPAR--ALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL-- 209 (540)
Q Consensus 134 ~~~~~~l~~~~~Ivv~Tp~~--l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~SATl-- 209 (540)
.+..+..|.+.+... -...+.- ..++++++||+-.+.+..+...+.......... ..++.|.|.
T Consensus 72 -----~~~nG~~i~~~~~~~~~~~~~~~G------~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~p~~~ 139 (384)
T PF03237_consen 72 -----ILPNGSRIQFRGADSPDSGDNIRG------FEYDLIIIDEAAKVPDDAFSELIRRLRATWGGS-IRMYISTPPNP 139 (384)
T ss_dssp -----EETTS-EEEEES-----SHHHHHT------S--SEEEEESGGGSTTHHHHHHHHHHHHCSTT---EEEEEE---S
T ss_pred -----EecCceEEEEeccccccccccccc------cccceeeeeecccCchHHHHHHHHhhhhcccCc-ceEEeecCCCC
Confidence 012445566666332 1111221 567899999998665543444333333333222 222445443
Q ss_pred cHHHHHHHHHhcCCC
Q psy16633 210 SEDVLSLKHLILRNP 224 (540)
Q Consensus 210 ~~~~~~~~~~~l~~p 224 (540)
......+......+.
T Consensus 140 ~~~~~~~~~~~~~~~ 154 (384)
T PF03237_consen 140 GGWFYEIFQRNLDDD 154 (384)
T ss_dssp SSHHHHHHHHHHCTS
T ss_pred CCceeeeeehhhcCC
Confidence 233444444444443
No 357
>PRK10689 transcription-repair coupling factor; Provisional
Probab=91.87 E-value=0.64 Score=54.88 Aligned_cols=60 Identities=13% Similarity=0.157 Sum_probs=52.9
Q ss_pred cCCcEEEEecChhhHHHHHHHHHh----CCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCC
Q psy16633 265 VQGKTIIFVNTVDKCYKLKLYLEQ----FKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324 (540)
Q Consensus 265 ~~~k~IIF~~s~~~~~~l~~~L~~----~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~ 324 (540)
.+.+++|.|||+.-|..++..+.+ .++++..+++..+..++..++....+|..+|+|+|.
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp 711 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTH 711 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECH
Confidence 456899999999999988887764 357888899999999999999999999999999997
No 358
>PRK08006 replicative DNA helicase; Provisional
Probab=91.85 E-value=1.4 Score=47.00 Aligned_cols=115 Identities=21% Similarity=0.283 Sum_probs=56.4
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEe-ecCccc
Q psy16633 55 NKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDI-SEQVDV 133 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~-~~~~~~ 133 (540)
|.=+++.|++|.|||. |++-+...+.. ..+..++|.+.- .-..|+..++-.... .+....+ .|....
T Consensus 224 G~LiiIaarPgmGKTa-falnia~~~a~------~~g~~V~~fSlE-M~~~ql~~Rlla~~~----~v~~~~i~~~~l~~ 291 (471)
T PRK08006 224 SDLIIVAARPSMGKTT-FAMNLCENAAM------LQDKPVLIFSLE-MPGEQIMMRMLASLS----RVDQTRIRTGQLDD 291 (471)
T ss_pred CcEEEEEeCCCCCHHH-HHHHHHHHHHH------hcCCeEEEEecc-CCHHHHHHHHHHHhc----CCCHHHhhcCCCCH
Confidence 3447889999999997 55555444422 235667777532 223444443332211 1211111 122111
Q ss_pred ccchh------hhhCCCCEEEE-----ChHHHHHHHhcCcCCccCCccEEEEcCcccccc
Q psy16633 134 SVQEP------LLVERPDIVVA-----TPARALAHLKAKTLDLKSSLEIVIIDEADLVFS 182 (540)
Q Consensus 134 ~~~~~------~l~~~~~Ivv~-----Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~ 182 (540)
..+.. .+.....+.|- |+..+...++.-.... ..+++||||=.+++..
T Consensus 292 ~e~~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~-~~~~lvvIDYLqli~~ 350 (471)
T PRK08006 292 EDWARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREH-GGLSLIMIDYLQLMRV 350 (471)
T ss_pred HHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhc-CCCCEEEEccHHHccC
Confidence 11111 12133455553 4555555443321111 3588999999998753
No 359
>PRK04328 hypothetical protein; Provisional
Probab=91.83 E-value=0.47 Score=46.06 Aligned_cols=53 Identities=15% Similarity=0.188 Sum_probs=33.0
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHH
Q psy16633 54 QNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELT 115 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~ 115 (540)
.|..+++.+++|+|||...+--+.+.+ ..+..++|+. +.+-..++.+.+..++
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~--------~~ge~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGL--------QMGEPGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH--------hcCCcEEEEE-eeCCHHHHHHHHHHcC
Confidence 356799999999999974333333332 2466677765 4444555666666554
No 360
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.83 E-value=0.37 Score=50.58 Aligned_cols=39 Identities=26% Similarity=0.345 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHhcCCc--EEEEcCCCchHHHHHHHHHHHHHH
Q psy16633 42 TLIQERAIPLILQNKD--VLVRARTGSGKTGAFAIPMIQKII 81 (540)
Q Consensus 42 t~~Q~~ai~~il~gkd--~li~a~TGsGKT~a~~ipil~~l~ 81 (540)
.+.|...+-.+++... +++.+|||||||.. +..+++.+.
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln 283 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELN 283 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhc
Confidence 6677777777776543 89999999999974 666777663
No 361
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.82 E-value=0.27 Score=53.08 Aligned_cols=39 Identities=21% Similarity=0.299 Sum_probs=25.7
Q ss_pred CCccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEe
Q psy16633 167 SSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206 (540)
Q Consensus 167 ~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~S 206 (540)
...+++||||+|.|.... ...+...++.-|....+|+.+
T Consensus 118 g~~kViIIDEa~~ls~~a-~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 118 GRYKVYLIDEVHMLSKQS-FNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred CCcEEEEEechhhccHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 567899999999876533 334555555555565555554
No 362
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.78 E-value=0.72 Score=50.50 Aligned_cols=39 Identities=26% Similarity=0.302 Sum_probs=25.2
Q ss_pred CCccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEe
Q psy16633 167 SSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206 (540)
Q Consensus 167 ~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~S 206 (540)
...+++||||+|.|.... ...+.+.++.-|....+|+.+
T Consensus 118 ~~~KVvIIdev~~Lt~~a-~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 118 SRYKIFIIDEVHMLSTNA-FNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred CCceEEEEEChhhCCHHH-HHHHHHHHHcCCCCeEEEEEe
Confidence 678999999999775433 334555555555555555544
No 363
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=91.76 E-value=1.8 Score=42.30 Aligned_cols=37 Identities=8% Similarity=0.101 Sum_probs=24.9
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEc
Q psy16633 54 QNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLS 98 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~ 98 (540)
.|.-++|.+++|+|||...+--+.+.+ ..+.+++|++
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a--------~~Ge~vlyis 71 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQA--------SRGNPVLFVT 71 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH--------hCCCcEEEEE
Confidence 456799999999999974333233222 2466788876
No 364
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=91.76 E-value=1.4 Score=49.80 Aligned_cols=16 Identities=31% Similarity=0.493 Sum_probs=14.3
Q ss_pred CcEEEEcCCCchHHHH
Q psy16633 56 KDVLVRARTGSGKTGA 71 (540)
Q Consensus 56 kd~li~a~TGsGKT~a 71 (540)
.++++.+|+|+|||..
T Consensus 204 ~n~lL~G~pG~GKT~l 219 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAI 219 (731)
T ss_pred CceEEECCCCCCHHHH
Confidence 4799999999999974
No 365
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=91.63 E-value=1.7 Score=45.44 Aligned_cols=131 Identities=17% Similarity=0.107 Sum_probs=61.4
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccc
Q psy16633 55 NKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVS 134 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~ 134 (540)
|+-+.+.+|||+|||.....-+-..+... ....-.++...+--.+ ..+++..++...+ +.+
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~-----~~~~v~~i~~d~~rig--alEQL~~~a~ilG--vp~---------- 251 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRH-----GADKVALLTTDSYRIG--GHEQLRIYGKLLG--VSV---------- 251 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc-----CCCeEEEEecCCcchh--HHHHHHHHHHHcC--Cce----------
Confidence 45588999999999985432222222110 1123345555553322 2334444544331 221
Q ss_pred cchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccC-CcHHHHHHHHHhCCcccceeeEeeeccH-H
Q psy16633 135 VQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSF-GYEDDMKAVLKFLPKLYQAILASATLSE-D 212 (540)
Q Consensus 135 ~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~-~~~~~l~~i~~~l~~~~q~il~SATl~~-~ 212 (540)
..+.++..+...+.. + ...++++||.+-+.-.. .....+..+....++...++.+|||... +
T Consensus 252 -----------~~v~~~~dl~~al~~----l-~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~ 315 (420)
T PRK14721 252 -----------RSIKDIADLQLMLHE----L-RGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDT 315 (420)
T ss_pred -----------ecCCCHHHHHHHHHH----h-cCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHH
Confidence 122233333333322 2 56678999986321110 0112233332222233456789999754 4
Q ss_pred HHHHHHHh
Q psy16633 213 VLSLKHLI 220 (540)
Q Consensus 213 ~~~~~~~~ 220 (540)
+......+
T Consensus 316 ~~~~~~~f 323 (420)
T PRK14721 316 LDEVISAY 323 (420)
T ss_pred HHHHHHHh
Confidence 44444443
No 366
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=91.62 E-value=1.2 Score=45.83 Aligned_cols=136 Identities=16% Similarity=0.145 Sum_probs=62.9
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHHhhcccccC---CCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCccc
Q psy16633 57 DVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV---QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDV 133 (540)
Q Consensus 57 d~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~---~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~ 133 (540)
-.++.||.|+||+.. ...+.+.++........ .....+-+++.-. .++.+.....+++....-..+...
T Consensus 43 A~Lf~Gp~G~GK~~l-A~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~-------~c~~i~~~~HPDl~~i~~~~~~~~ 114 (365)
T PRK07471 43 AWLIGGPQGIGKATL-AYRMARFLLATPPPGGDGAVPPPTSLAIDPDHP-------VARRIAAGAHGGLLTLERSWNEKG 114 (365)
T ss_pred eEEEECCCCCCHHHH-HHHHHHHHhCCCCCCCCccccccccccCCCCCh-------HHHHHHccCCCCeEEEeccccccc
Confidence 489999999999974 45555666653210000 0112233333322 222222233334443321111000
Q ss_pred ccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEeeec
Q psy16633 134 SVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209 (540)
Q Consensus 134 ~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~SATl 209 (540)
.. ....|.|-..-.+.+.+..... . ....++||||+|.|... -...+.+.++.-|....+|++|...
T Consensus 115 ~~------~~~~I~VdqiR~l~~~~~~~~~-~-~~~kVviIDead~m~~~-aanaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 115 KR------LRTVITVDEVRELISFFGLTAA-E-GGWRVVIVDTADEMNAN-AANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred cc------ccccccHHHHHHHHHHhCcCcc-c-CCCEEEEEechHhcCHH-HHHHHHHHHhcCCCCeEEEEEECCc
Confidence 00 0123433332223333322222 1 56789999999977442 2344555555555555556555443
No 367
>PRK13342 recombination factor protein RarA; Reviewed
Probab=91.60 E-value=1.1 Score=47.10 Aligned_cols=38 Identities=24% Similarity=0.182 Sum_probs=22.9
Q ss_pred CccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEeeecc
Q psy16633 168 SLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLS 210 (540)
Q Consensus 168 ~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~SATl~ 210 (540)
.-.+|+|||+|.+... ....++..+.. ..++++.+|..
T Consensus 92 ~~~vL~IDEi~~l~~~----~q~~LL~~le~-~~iilI~att~ 129 (413)
T PRK13342 92 RRTILFIDEIHRFNKA----QQDALLPHVED-GTITLIGATTE 129 (413)
T ss_pred CceEEEEechhhhCHH----HHHHHHHHhhc-CcEEEEEeCCC
Confidence 4568999999976432 23334444443 45666766643
No 368
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=91.54 E-value=0.5 Score=46.27 Aligned_cols=45 Identities=27% Similarity=0.327 Sum_probs=29.7
Q ss_pred HHHHCCCCCChHHHHHHHHHHhc-C-CcEEEEcCCCchHHHHHHHHHHHHH
Q psy16633 32 AIAKLGWLEPTLIQERAIPLILQ-N-KDVLVRARTGSGKTGAFAIPMIQKI 80 (540)
Q Consensus 32 ~l~~~g~~~pt~~Q~~ai~~il~-g-kd~li~a~TGsGKT~a~~ipil~~l 80 (540)
.+.++|+ .+-|.+.+..++. . ..+++.++||||||. ++-.++..+
T Consensus 58 ~l~~lg~---~~~~~~~l~~~~~~~~GlilisG~tGSGKTT-~l~all~~i 104 (264)
T cd01129 58 DLEKLGL---KPENLEIFRKLLEKPHGIILVTGPTGSGKTT-TLYSALSEL 104 (264)
T ss_pred CHHHcCC---CHHHHHHHHHHHhcCCCEEEEECCCCCcHHH-HHHHHHhhh
Confidence 4667776 3445566655543 3 458999999999997 345555554
No 369
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.53 E-value=1.2 Score=48.35 Aligned_cols=39 Identities=26% Similarity=0.399 Sum_probs=25.6
Q ss_pred CCccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEe
Q psy16633 167 SSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206 (540)
Q Consensus 167 ~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~S 206 (540)
...+++||||+|.|....+ ..+.+.++..|....+|+.+
T Consensus 118 ~~~kVvIIDEad~ls~~a~-naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSAF-NAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred CCceEEEEcCcccCCHHHH-HHHHHHHhCCCCCEEEEEEe
Confidence 5678999999997765433 33444555555666666655
No 370
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=91.33 E-value=0.76 Score=46.68 Aligned_cols=60 Identities=15% Similarity=0.150 Sum_probs=36.8
Q ss_pred cchhcccCCccCCCCHHHHHHHHH-----------CCCCCChHHHHHHHHHHhcC----------CcEEEEcCCCchHHH
Q psy16633 12 LIQVYFELPFTFTLFCIPLQAIAK-----------LGWLEPTLIQERAIPLILQN----------KDVLVRARTGSGKTG 70 (540)
Q Consensus 12 ~~~~~~~~~~~~~L~~~i~~~l~~-----------~g~~~pt~~Q~~ai~~il~g----------kd~li~a~TGsGKT~ 70 (540)
.+.++|.-|+.+|-+..+...... =||.-|-.+-.++.-.+.++ +-+++.+|.|+|||+
T Consensus 84 ~vd~lf~~~~~~g~~~~i~~~~~~~~~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTl 163 (413)
T PLN00020 84 MVDSLFQGPFGLGTDSDIASSYDYLQRTRSFDNLVGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSF 163 (413)
T ss_pred chhhhhcCCccCCcchhhhhhhHHHhhhcchhhhcCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHH
Confidence 455666667767777776654433 14444545554554333332 348899999999997
Q ss_pred H
Q psy16633 71 A 71 (540)
Q Consensus 71 a 71 (540)
.
T Consensus 164 l 164 (413)
T PLN00020 164 Q 164 (413)
T ss_pred H
Confidence 3
No 371
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=91.23 E-value=1.8 Score=49.89 Aligned_cols=46 Identities=22% Similarity=0.087 Sum_probs=25.5
Q ss_pred ccEEEEcCccccccCCcH---HHHHHHHHhCCcccceeeEeeeccHHHH
Q psy16633 169 LEIVIIDEADLVFSFGYE---DDMKAVLKFLPKLYQAILASATLSEDVL 214 (540)
Q Consensus 169 l~~lViDEah~l~~~~~~---~~l~~i~~~l~~~~q~il~SATl~~~~~ 214 (540)
-.+|+|||+|.+...|.. .+...++...-....+.++-||-.++..
T Consensus 267 ~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt~~e~r 315 (852)
T TIGR03346 267 QIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEYR 315 (852)
T ss_pred CeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCcHHHHH
Confidence 458999999998753321 2233333322223456666666655543
No 372
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=91.21 E-value=1.1 Score=42.81 Aligned_cols=52 Identities=15% Similarity=0.259 Sum_probs=31.5
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHH
Q psy16633 55 NKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELT 115 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~ 115 (540)
|.-+++.+++|+|||... ..++...+ ..+.+++++.=-. -..++.+.+.+++
T Consensus 25 g~~~~i~G~~GsGKt~l~-~~~~~~~~-------~~g~~~~y~~~e~-~~~~~~~~~~~~g 76 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLS-QQFVYGAL-------KQGKKVYVITTEN-TSKSYLKQMESVK 76 (234)
T ss_pred CcEEEEECCCCCChHHHH-HHHHHHHH-------hCCCEEEEEEcCC-CHHHHHHHHHHCC
Confidence 456899999999999743 33322221 2466777776433 3345555555543
No 373
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=91.15 E-value=1.4 Score=48.20 Aligned_cols=33 Identities=18% Similarity=0.294 Sum_probs=20.0
Q ss_pred CCccEEEEcCccccccCCcHHHHHHHHHhCCccc
Q psy16633 167 SSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLY 200 (540)
Q Consensus 167 ~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~ 200 (540)
...+++||||+|.|....+. .+.+.++.-|...
T Consensus 118 ~~~kViIIDE~~~Lt~~a~n-aLLKtLEepp~~~ 150 (559)
T PRK05563 118 AKYKVYIIDEVHMLSTGAFN-ALLKTLEEPPAHV 150 (559)
T ss_pred CCeEEEEEECcccCCHHHHH-HHHHHhcCCCCCe
Confidence 67889999999977554333 3333344444443
No 374
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.13 E-value=0.47 Score=52.02 Aligned_cols=39 Identities=21% Similarity=0.420 Sum_probs=24.2
Q ss_pred CCccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEe
Q psy16633 167 SSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206 (540)
Q Consensus 167 ~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~S 206 (540)
...+++||||+|.|....+. .+.+.++.-|....+|+.+
T Consensus 123 g~~KV~IIDEvh~Ls~~a~N-aLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFN-AMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred CCceEEEEEChhhCCHHHHH-HHHHhcccCCCCeEEEEEE
Confidence 56889999999987654433 3334444445555555544
No 375
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.11 E-value=0.42 Score=48.00 Aligned_cols=56 Identities=21% Similarity=0.227 Sum_probs=39.7
Q ss_pred CCChHHHHHHH-HHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHH
Q psy16633 39 LEPTLIQERAI-PLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKEL 103 (540)
Q Consensus 39 ~~pt~~Q~~ai-~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~L 103 (540)
..+++.|..-+ -++.++++++++++||||||. ++.+++..+ ....+++.+=-|.|+
T Consensus 126 gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt-~lnall~~I--------p~~~rivtIEdt~E~ 182 (312)
T COG0630 126 GTISPEQAAYLWLAIEARKSIIICGGTASGKTT-LLNALLDFI--------PPEERIVTIEDTPEL 182 (312)
T ss_pred CCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHH-HHHHHHHhC--------CchhcEEEEeccccc
Confidence 34666665554 444567899999999999997 566766665 456777777666655
No 376
>PRK10865 protein disaggregation chaperone; Provisional
Probab=91.09 E-value=1.8 Score=49.90 Aligned_cols=44 Identities=23% Similarity=0.131 Sum_probs=24.8
Q ss_pred cEEEEcCccccccCCc---HHHHHHHHHhCCcccceeeEeeeccHHH
Q psy16633 170 EIVIIDEADLVFSFGY---EDDMKAVLKFLPKLYQAILASATLSEDV 213 (540)
Q Consensus 170 ~~lViDEah~l~~~~~---~~~l~~i~~~l~~~~q~il~SATl~~~~ 213 (540)
.+|+|||+|.+...|- ..+...++.-.-....+.+.-||-.++.
T Consensus 273 ~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l~~IgaTt~~e~ 319 (857)
T PRK10865 273 VILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEY 319 (857)
T ss_pred eEEEEecHHHhccCCCCccchhHHHHhcchhhcCCCeEEEcCCCHHH
Confidence 4799999999875431 1223333322222345666667766654
No 377
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=91.08 E-value=1.6 Score=46.51 Aligned_cols=148 Identities=17% Similarity=0.131 Sum_probs=83.6
Q ss_pred CChHHHHHHHHHHhc------C----CcEEEEcCCCchHHHHHH-HHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHH
Q psy16633 40 EPTLIQERAIPLILQ------N----KDVLVRARTGSGKTGAFA-IPMIQKIINLKQTAQVQETKALVLSPSKELCNQLH 108 (540)
Q Consensus 40 ~pt~~Q~~ai~~il~------g----kd~li~a~TGsGKT~a~~-ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~ 108 (540)
..-|+|.-.+-.+.. | +..+|..|-+-|||.... +.+...++. ...+..+.|++|+.+-+.+.+
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~-----~~~~~~~~i~A~s~~qa~~~F 135 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLN-----WRSGAGIYILAPSVEQAANSF 135 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhh-----hhcCCcEEEEeccHHHHHHhh
Confidence 456999999988873 2 357999999999996544 222233333 256888999999999998888
Q ss_pred HHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhc--CcCCccCCccEEEEcCccccccCCcH
Q psy16633 109 KNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKA--KTLDLKSSLEIVIIDEADLVFSFGYE 186 (540)
Q Consensus 109 ~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~--~~~~~~~~l~~lViDEah~l~~~~~~ 186 (540)
..++....... .+.... .... ....|...-....+..+.. +..+- .+..+.|+||.|.....+
T Consensus 136 ~~ar~mv~~~~-~l~~~~-----~~q~------~s~~i~~~~~~s~ik~~aa~~~~~Dg-~~~~~~I~DEih~f~~~~-- 200 (546)
T COG4626 136 NPARDMVKRDD-DLRDLC-----NVQT------HSRTITHRKTDSTIKAVAADPNTVDG-LNSVGAIIDELHLFGKQE-- 200 (546)
T ss_pred HHHHHHHHhCc-chhhhh-----cccc------ceeEEEecccceeeeeeccCCCcccC-CCcceEEEehhhhhcCHH--
Confidence 87777655432 111100 0000 0001111111111112211 22222 467899999999766543
Q ss_pred HHHHHHHHhCC--cccceeeEee
Q psy16633 187 DDMKAVLKFLP--KLYQAILASA 207 (540)
Q Consensus 187 ~~l~~i~~~l~--~~~q~il~SA 207 (540)
+.+..+..-+. ++.+++..|.
T Consensus 201 ~~~~~~~~g~~ar~~~l~~~ITT 223 (546)
T COG4626 201 DMYSEAKGGLGARPEGLVVYITT 223 (546)
T ss_pred HHHHHHHhhhccCcCceEEEEec
Confidence 44444444443 3456666665
No 378
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=91.07 E-value=0.66 Score=47.93 Aligned_cols=47 Identities=17% Similarity=0.265 Sum_probs=32.7
Q ss_pred CccEEEEcCccccccC-CcHHHHHHHHHhCCc-ccceeeEeeeccHHHH
Q psy16633 168 SLEIVIIDEADLVFSF-GYEDDMKAVLKFLPK-LYQAILASATLSEDVL 214 (540)
Q Consensus 168 ~l~~lViDEah~l~~~-~~~~~l~~i~~~l~~-~~q~il~SATl~~~~~ 214 (540)
++++++||.++.+... .....+..++..+.. ..|+++.|...|..+.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~ 223 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELN 223 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhc
Confidence 5788999999977655 345666666666654 4477777777776554
No 379
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.01 E-value=0.43 Score=51.00 Aligned_cols=33 Identities=21% Similarity=0.316 Sum_probs=19.7
Q ss_pred CCccEEEEcCccccccCCcHHHHHHHHHhCCccc
Q psy16633 167 SSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLY 200 (540)
Q Consensus 167 ~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~ 200 (540)
...+++||||||.+....+ ..+...+...|...
T Consensus 118 ~~~KVvIIDEad~Lt~~a~-naLLk~LEepp~~~ 150 (486)
T PRK14953 118 GKYKVYIIDEAHMLTKEAF-NALLKTLEEPPPRT 150 (486)
T ss_pred CCeeEEEEEChhhcCHHHH-HHHHHHHhcCCCCe
Confidence 6778999999997754332 23333344334343
No 380
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=91.00 E-value=1.8 Score=46.40 Aligned_cols=18 Identities=33% Similarity=0.399 Sum_probs=15.0
Q ss_pred cEEEEcCCCchHHHHHHH
Q psy16633 57 DVLVRARTGSGKTGAFAI 74 (540)
Q Consensus 57 d~li~a~TGsGKT~a~~i 74 (540)
.+++.||.|+|||.++-+
T Consensus 45 a~Lf~Gp~G~GKTT~Ari 62 (507)
T PRK06645 45 GYLLTGIRGVGKTTSARI 62 (507)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 599999999999985443
No 381
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=90.97 E-value=0.14 Score=46.65 Aligned_cols=43 Identities=26% Similarity=0.207 Sum_probs=28.8
Q ss_pred hCCCCEEEEChHHHHHHHhcCcCC-ccCCccEEEEcCccccccC
Q psy16633 141 VERPDIVVATPARALAHLKAKTLD-LKSSLEIVIIDEADLVFSF 183 (540)
Q Consensus 141 ~~~~~Ivv~Tp~~l~~~l~~~~~~-~~~~l~~lViDEah~l~~~ 183 (540)
...++|||++...|++-.....+. +...-.+|||||||.+.+.
T Consensus 117 ~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~~ 160 (174)
T PF06733_consen 117 AKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLEDA 160 (174)
T ss_dssp GGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGGG
T ss_pred cccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHHH
Confidence 357899999999887754433322 2245578999999987653
No 382
>PTZ00293 thymidine kinase; Provisional
Probab=90.94 E-value=1.4 Score=41.32 Aligned_cols=39 Identities=23% Similarity=0.252 Sum_probs=27.2
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcH
Q psy16633 55 NKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSK 101 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~ 101 (540)
|+=.++.||.+||||. -++-.+..+. ..+.+++++-|..
T Consensus 4 G~i~vi~GpMfSGKTt-eLLr~i~~y~-------~ag~kv~~~kp~~ 42 (211)
T PTZ00293 4 GTISVIIGPMFSGKTT-ELMRLVKRFT-------YSEKKCVVIKYSK 42 (211)
T ss_pred eEEEEEECCCCChHHH-HHHHHHHHHH-------HcCCceEEEEecc
Confidence 5557899999999996 3444444432 3567788888853
No 383
>KOG0701|consensus
Probab=90.83 E-value=0.13 Score=61.07 Aligned_cols=94 Identities=20% Similarity=0.329 Sum_probs=75.5
Q ss_pred cEEEEecChhhHHHHHHHHHhC-CCceEEeCCCCC-----------HHHHHHHHHHHhcCCccEEEeCCCCccCCccccc
Q psy16633 268 KTIIFVNTVDKCYKLKLYLEQF-KISTCVLNSELP-----------AKARCHAVYQFNQGLYDVIIASDEKALETPQINS 335 (540)
Q Consensus 268 k~IIF~~s~~~~~~l~~~L~~~-~~~~~~l~~~l~-----------~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~ 335 (540)
-.|+||+....++.+.+.+... ...+..+.|.+. ...+..++..|....+++|++|.
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~----------- 362 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATS----------- 362 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHH-----------
Confidence 4689999999999998887653 223333333331 23356789999999999999999
Q ss_pred ccccccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCC
Q psy16633 336 TNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384 (540)
Q Consensus 336 ~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g 384 (540)
++..|+|++.++.|+.++.|....+|+|+.||+-+.+
T Consensus 363 ------------~~~e~~d~~~~~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 363 ------------VLEEGVDVPKCNLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred ------------HHHhhcchhhhhhheeccCcchHHHHHHhhcccccch
Confidence 8999999999999999999999999999999986543
No 384
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=90.67 E-value=2.6 Score=42.23 Aligned_cols=39 Identities=21% Similarity=0.354 Sum_probs=24.6
Q ss_pred CCccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEe
Q psy16633 167 SSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206 (540)
Q Consensus 167 ~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~S 206 (540)
...++|+|||+|.+... ....+..++...+....+|+.+
T Consensus 101 ~~~~vviiDe~~~l~~~-~~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 101 APFKIIFLDEADNLTSD-AQQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CCceEEEEeCcccCCHH-HHHHHHHHHhcCCCCCeEEEEe
Confidence 34679999999977542 2344555555555566666544
No 385
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=90.62 E-value=0.98 Score=45.82 Aligned_cols=41 Identities=10% Similarity=0.121 Sum_probs=27.6
Q ss_pred ChHHHHHHHHHHh----cCC---cEEEEcCCCchHHHHHHHHHHHHHHh
Q psy16633 41 PTLIQERAIPLIL----QNK---DVLVRARTGSGKTGAFAIPMIQKIIN 82 (540)
Q Consensus 41 pt~~Q~~ai~~il----~gk---d~li~a~TGsGKT~a~~ipil~~l~~ 82 (540)
..|||+..+..+. +|+ -.++.||.|+||+.. ...+.+.++.
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~l-A~~~A~~LlC 50 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDAL-IYALSRWLMC 50 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHH-HHHHHHHHcC
Confidence 4567777766554 343 488999999999974 4444555554
No 386
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=90.61 E-value=1.5 Score=49.17 Aligned_cols=40 Identities=23% Similarity=0.186 Sum_probs=24.3
Q ss_pred CccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEeeeccHH
Q psy16633 168 SLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSED 212 (540)
Q Consensus 168 ~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~SATl~~~ 212 (540)
...+++|||+|.+... ....++..+. ..++++.+||-.+.
T Consensus 109 ~~~IL~IDEIh~Ln~~----qQdaLL~~lE-~g~IiLI~aTTenp 148 (725)
T PRK13341 109 KRTILFIDEVHRFNKA----QQDALLPWVE-NGTITLIGATTENP 148 (725)
T ss_pred CceEEEEeChhhCCHH----HHHHHHHHhc-CceEEEEEecCCCh
Confidence 4568999999976432 1223333333 35678888876543
No 387
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=90.55 E-value=1.3 Score=40.81 Aligned_cols=38 Identities=24% Similarity=0.239 Sum_probs=22.5
Q ss_pred CCccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeE
Q psy16633 167 SSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILA 205 (540)
Q Consensus 167 ~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~ 205 (540)
....++||||+|.+.... ...+...++..|+..-++++
T Consensus 95 ~~~kviiide~~~l~~~~-~~~Ll~~le~~~~~~~~il~ 132 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAA-ANALLKTLEEPPPNTLFILI 132 (188)
T ss_pred CCeEEEEEechhhhCHHH-HHHHHHHhcCCCCCeEEEEE
Confidence 677899999999875432 23344444444444444443
No 388
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=90.53 E-value=2.9 Score=42.88 Aligned_cols=110 Identities=17% Similarity=0.200 Sum_probs=61.7
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccc
Q psy16633 55 NKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVS 134 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~ 134 (540)
.+.+-+.|+.|+|||+ ++-++-..+. ...+.| +..-+-+.++++.+..+. ++.
T Consensus 62 ~~GlYl~G~vG~GKT~--Lmd~f~~~lp-----~~~k~R----~HFh~Fm~~vh~~l~~~~-------------~~~--- 114 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTM--LMDLFYDSLP-----IKRKRR----VHFHEFMLDVHSRLHQLR-------------GQD--- 114 (362)
T ss_pred CceEEEECCCCCchhH--HHHHHHHhCC-----cccccc----ccccHHHHHHHHHHHHHh-------------CCC---
Confidence 4679999999999996 3333322211 112222 233466666666666653 110
Q ss_pred cchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCCcHHHHHHHHHhC-CcccceeeEeeeccHHH
Q psy16633 135 VQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFL-PKLYQAILASATLSEDV 213 (540)
Q Consensus 135 ~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~l-~~~~q~il~SATl~~~~ 213 (540)
+- -..+.+.+. ....+|.|||.| +.+.+---.+..++..+ ..+.-++..|-+.|+++
T Consensus 115 ----------~~----l~~va~~l~-------~~~~lLcfDEF~-V~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 115 ----------DP----LPQVADELA-------KESRLLCFDEFQ-VTDIADAMILKRLFEALFKRGVVLVATSNRPPEDL 172 (362)
T ss_pred ----------cc----HHHHHHHHH-------hcCCEEEEeeee-ccchhHHHHHHHHHHHHHHCCCEEEecCCCChHHH
Confidence 00 011112221 556789999999 44554333444455443 45677888888888765
No 389
>PRK08506 replicative DNA helicase; Provisional
Probab=90.51 E-value=1.6 Score=46.50 Aligned_cols=113 Identities=19% Similarity=0.233 Sum_probs=55.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEe-ecCccc
Q psy16633 55 NKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDI-SEQVDV 133 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~-~~~~~~ 133 (540)
|.-+++.|+||.|||. |++-++..+.. .+..+++++.- .-..|+...+-.... ++....+ .|....
T Consensus 192 G~LivIaarpg~GKT~-fal~ia~~~~~-------~g~~V~~fSlE-Ms~~ql~~Rlla~~s----~v~~~~i~~~~l~~ 258 (472)
T PRK08506 192 GDLIIIAARPSMGKTT-LCLNMALKALN-------QDKGVAFFSLE-MPAEQLMLRMLSAKT----SIPLQNLRTGDLDD 258 (472)
T ss_pred CceEEEEcCCCCChHH-HHHHHHHHHHh-------cCCcEEEEeCc-CCHHHHHHHHHHHhc----CCCHHHHhcCCCCH
Confidence 3458899999999997 55555444422 35567776432 233444444332211 1111111 121111
Q ss_pred ccch------hhhhCCCCEEEE-----ChHHHHHHHhcCcCCccCCccEEEEcCcccccc
Q psy16633 134 SVQE------PLLVERPDIVVA-----TPARALAHLKAKTLDLKSSLEIVIIDEADLVFS 182 (540)
Q Consensus 134 ~~~~------~~l~~~~~Ivv~-----Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~ 182 (540)
..+. ..+. ...+.|- |+..+...++.-.... ..+++||||=.++|..
T Consensus 259 ~e~~~~~~a~~~l~-~~~l~I~d~~~~ti~~I~~~~r~l~~~~-~~~~lvvIDyLql~~~ 316 (472)
T PRK08506 259 DEWERLSDACDELS-KKKLFVYDSGYVNIHQVRAQLRKLKSQH-PEIGLAVIDYLQLMSG 316 (472)
T ss_pred HHHHHHHHHHHHHH-cCCeEEECCCCCCHHHHHHHHHHHHHhC-CCCCEEEEcChhhccC
Confidence 1111 1122 2334442 4555555544321111 3588999999998764
No 390
>PRK10436 hypothetical protein; Provisional
Probab=90.40 E-value=0.63 Score=49.31 Aligned_cols=45 Identities=33% Similarity=0.355 Sum_probs=29.1
Q ss_pred HHHHCCCCCChHHHHHHHHHHhc--CCcEEEEcCCCchHHHHHHHHHHHHH
Q psy16633 32 AIAKLGWLEPTLIQERAIPLILQ--NKDVLVRARTGSGKTGAFAIPMIQKI 80 (540)
Q Consensus 32 ~l~~~g~~~pt~~Q~~ai~~il~--gkd~li~a~TGsGKT~a~~ipil~~l 80 (540)
.|.++|+ .+-|.+.+..++. +.-+++.+|||||||.. +..++..+
T Consensus 196 ~L~~LG~---~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTt-L~a~l~~~ 242 (462)
T PRK10436 196 DLETLGM---TPAQLAQFRQALQQPQGLILVTGPTGSGKTVT-LYSALQTL 242 (462)
T ss_pred CHHHcCc---CHHHHHHHHHHHHhcCCeEEEECCCCCChHHH-HHHHHHhh
Confidence 4456665 3445555554443 34599999999999974 44556554
No 391
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=90.38 E-value=0.79 Score=49.92 Aligned_cols=72 Identities=14% Similarity=0.212 Sum_probs=52.2
Q ss_pred CChHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHH-HHHHHHHh
Q psy16633 40 EPTLIQERAIPLILQN--KDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLH-KNIQELTM 116 (540)
Q Consensus 40 ~pt~~Q~~ai~~il~g--kd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~-~~l~~l~~ 116 (540)
.-+|+|.+.+..+... +.+.+..++-+|||.+.+. ++-..+. .....+|++.||.++|..+. ..+..+..
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n-~~g~~i~------~~P~~~l~v~Pt~~~a~~~~~~rl~Pmi~ 88 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLN-WIGYSID------QDPGPMLYVQPTDDAAKDFSKERLDPMIR 88 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHh-hceEEEE------eCCCCEEEEEEcHHHHHHHHHHHHHHHHH
Confidence 5688999888877654 5799999999999984433 3322222 35678999999999998887 45666555
Q ss_pred hc
Q psy16633 117 KC 118 (540)
Q Consensus 117 ~~ 118 (540)
.+
T Consensus 89 ~s 90 (557)
T PF05876_consen 89 AS 90 (557)
T ss_pred hC
Confidence 44
No 392
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=90.34 E-value=0.2 Score=49.23 Aligned_cols=53 Identities=19% Similarity=0.285 Sum_probs=32.9
Q ss_pred HHHHHHHHHH-hcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHH
Q psy16633 43 LIQERAIPLI-LQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKEL 103 (540)
Q Consensus 43 ~~Q~~ai~~i-l~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~L 103 (540)
....+.+... ..+.++++.|+||||||. ++-.++..+-. ...+++++-.+.|+
T Consensus 114 ~~~~~~l~~~v~~~~~ili~G~tGSGKTT-~l~all~~i~~-------~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 114 EEIAEFLRSAVRGRGNILISGPTGSGKTT-LLNALLEEIPP-------EDERIVTIEDPPEL 167 (270)
T ss_dssp HHHHHHHHHCHHTTEEEEEEESTTSSHHH-HHHHHHHHCHT-------TTSEEEEEESSS-S
T ss_pred HHHHHHHhhccccceEEEEECCCccccch-HHHHHhhhccc-------cccceEEeccccce
Confidence 3334444433 346789999999999997 45555555421 23677777666665
No 393
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=90.34 E-value=0.92 Score=42.86 Aligned_cols=57 Identities=21% Similarity=0.295 Sum_probs=29.1
Q ss_pred EEChHHHHHHHhcCcCCccCCccEEEEcCccccc-cC----CcHHHHHHHHHhCCcc-cceeeEeeec
Q psy16633 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVF-SF----GYEDDMKAVLKFLPKL-YQAILASATL 209 (540)
Q Consensus 148 v~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~-~~----~~~~~l~~i~~~l~~~-~q~il~SATl 209 (540)
..+...++..+...... -+|||||+|.+. .. .+...+..++...... ...+.++++-
T Consensus 103 ~~~l~~~~~~l~~~~~~-----~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~ 165 (234)
T PF01637_consen 103 FSALERLLEKLKKKGKK-----VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSS 165 (234)
T ss_dssp G--HHHHHHHHHHCHCC-----EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESS
T ss_pred HHHHHHHHHHHHhcCCc-----EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCc
Confidence 34455566666554322 489999999988 21 2334555555553322 2334455554
No 394
>PRK07004 replicative DNA helicase; Provisional
Probab=90.29 E-value=1.1 Score=47.75 Aligned_cols=37 Identities=22% Similarity=0.281 Sum_probs=23.8
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEc
Q psy16633 55 NKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLS 98 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~ 98 (540)
|.-+++.|+||+|||. |++-+...+.. ..+..+++++
T Consensus 213 g~liviaarpg~GKT~-~al~ia~~~a~------~~~~~v~~fS 249 (460)
T PRK07004 213 GELIIVAGRPSMGKTA-FSMNIGEYVAV------EYGLPVAVFS 249 (460)
T ss_pred CceEEEEeCCCCCccH-HHHHHHHHHHH------HcCCeEEEEe
Confidence 4458899999999997 55544444321 2355666664
No 395
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=90.28 E-value=2.6 Score=38.19 Aligned_cols=139 Identities=17% Similarity=0.256 Sum_probs=67.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccch
Q psy16633 58 VLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQE 137 (540)
Q Consensus 58 ~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~ 137 (540)
+.|--..|=|||.|++=-++..+ ..+.+|+++-=.+. ...+.....+ ..++ .+.+..... ......
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~--------G~G~rV~ivQFlKg--~~~~GE~~~l-~~l~-~~~~~~~g~--~f~~~~ 71 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAA--------GHGMRVLIVQFLKG--GRYSGELKAL-KKLP-NVEIERFGK--GFVWRM 71 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHH--------CTT--EEEEESS----SS--HHHHHH-GGGT---EEEE--T--T----G
T ss_pred EEEEeCCCCCchHHHHHHHHHHH--------hCCCEEEEEEEecC--CCCcCHHHHH-HhCC-eEEEEEcCC--cccccC
Confidence 55667789999998777666665 67889999854443 0011222222 1221 223222111 100000
Q ss_pred hhhhCCCCEEEEChHHHHHHHhc--CcCCccCCccEEEEcCccccccCCcH--HHHHHHHHhCCcccceeeEeeeccHHH
Q psy16633 138 PLLVERPDIVVATPARALAHLKA--KTLDLKSSLEIVIIDEADLVFSFGYE--DDMKAVLKFLPKLYQAILASATLSEDV 213 (540)
Q Consensus 138 ~~l~~~~~Ivv~Tp~~l~~~l~~--~~~~~~~~l~~lViDEah~l~~~~~~--~~l~~i~~~l~~~~q~il~SATl~~~~ 213 (540)
..- ..+ .....+.+.. ..+.- ..+++||+||+=..++.++- +++..++...|...-+|+.--..|+.+
T Consensus 72 ~~~--~~~-----~~~~~~~~~~a~~~i~~-~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l 143 (172)
T PF02572_consen 72 NEE--EED-----RAAAREGLEEAKEAISS-GEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEEL 143 (172)
T ss_dssp GGH--HHH-----HHHHHHHHHHHHHHTT--TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHH
T ss_pred CCc--HHH-----HHHHHHHHHHHHHHHhC-CCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHH
Confidence 000 000 1112222221 11222 67899999999988888754 677788888888888888888888887
Q ss_pred HHHHH
Q psy16633 214 LSLKH 218 (540)
Q Consensus 214 ~~~~~ 218 (540)
...+.
T Consensus 144 ~e~AD 148 (172)
T PF02572_consen 144 IEAAD 148 (172)
T ss_dssp HHH-S
T ss_pred HHhCC
Confidence 76654
No 396
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=90.19 E-value=4.8 Score=39.56 Aligned_cols=49 Identities=18% Similarity=0.306 Sum_probs=28.4
Q ss_pred CCccEEEEcCccccccC-CcHHHHHHHHHhCC------cccceeeEeeeccHHHHH
Q psy16633 167 SSLEIVIIDEADLVFSF-GYEDDMKAVLKFLP------KLYQAILASATLSEDVLS 215 (540)
Q Consensus 167 ~~l~~lViDEah~l~~~-~~~~~l~~i~~~l~------~~~q~il~SATl~~~~~~ 215 (540)
.+.++++||=+-+.... ..-..+..+....+ +.--++.++||...+...
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~ 208 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALE 208 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHH
Confidence 55778888877654321 12234555554444 344577888887654433
No 397
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=90.18 E-value=2.6 Score=48.40 Aligned_cols=16 Identities=25% Similarity=0.534 Sum_probs=14.2
Q ss_pred CcEEEEcCCCchHHHH
Q psy16633 56 KDVLVRARTGSGKTGA 71 (540)
Q Consensus 56 kd~li~a~TGsGKT~a 71 (540)
.++++.||.|+|||..
T Consensus 209 ~n~lLvG~pGvGKTal 224 (852)
T TIGR03345 209 NNPILTGEAGVGKTAV 224 (852)
T ss_pred CceeEECCCCCCHHHH
Confidence 4799999999999974
No 398
>KOG1513|consensus
Probab=90.17 E-value=0.19 Score=54.77 Aligned_cols=154 Identities=18% Similarity=0.269 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHHhcCCc----------EEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHH
Q psy16633 40 EPTLIQERAIPLILQNKD----------VLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHK 109 (540)
Q Consensus 40 ~pt~~Q~~ai~~il~gkd----------~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~ 109 (540)
.++..|-+|+--+.+..+ .||--..|-||--+..--|++.+++ ...++|++.-+..|-....+
T Consensus 264 ~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLk-------GRKrAlW~SVSsDLKfDAER 336 (1300)
T KOG1513|consen 264 HLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLK-------GRKRALWFSVSSDLKFDAER 336 (1300)
T ss_pred chhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhc-------ccceeEEEEeccccccchhh
Q ss_pred HHHHHH-----hhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCc------------cEE
Q psy16633 110 NIQELT-----MKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSL------------EIV 172 (540)
Q Consensus 110 ~l~~l~-----~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l------------~~l 172 (540)
.+..++ ...-..+.+..+.+..+....+ .++++|+..|.--.....-...+++ ++|
T Consensus 337 DL~DigA~~I~V~alnK~KYakIss~en~n~kr-------GViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvI 409 (1300)
T KOG1513|consen 337 DLRDIGATGIAVHALNKFKYAKISSKENTNTKR-------GVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVI 409 (1300)
T ss_pred chhhcCCCCccceehhhcccccccccccCCccc-------eeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeE
Q ss_pred EEcCcccccc---------CCcHHHHHHHHHhCCcccceeeEeee
Q psy16633 173 IIDEADLVFS---------FGYEDDMKAVLKFLPKLYQAILASAT 208 (540)
Q Consensus 173 ViDEah~l~~---------~~~~~~l~~i~~~l~~~~q~il~SAT 208 (540)
|+||||..-. -.-+..+..+.+.+|.. +++..|||
T Consensus 410 vfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP~A-RVVYASAT 453 (1300)
T KOG1513|consen 410 VFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLPNA-RVVYASAT 453 (1300)
T ss_pred EehhhhhhcccccccCCCcCcccHhHHHHHHhCCCc-eEEEeecc
No 399
>PRK05748 replicative DNA helicase; Provisional
Probab=90.02 E-value=1.2 Score=47.42 Aligned_cols=113 Identities=18% Similarity=0.220 Sum_probs=55.2
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEe-ecCccc
Q psy16633 55 NKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDI-SEQVDV 133 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~-~~~~~~ 133 (540)
|.-++|.|+||+|||. |.+-++..+.. ..+..+++++. -.-..|+...+-.... .+....+ .|....
T Consensus 203 G~livIaarpg~GKT~-~al~ia~~~a~------~~g~~v~~fSl-Ems~~~l~~R~l~~~~----~v~~~~i~~~~l~~ 270 (448)
T PRK05748 203 NDLIIVAARPSVGKTA-FALNIAQNVAT------KTDKNVAIFSL-EMGAESLVMRMLCAEG----NIDAQRLRTGQLTD 270 (448)
T ss_pred CceEEEEeCCCCCchH-HHHHHHHHHHH------hCCCeEEEEeC-CCCHHHHHHHHHHHhc----CCCHHHhhcCCCCH
Confidence 3458999999999997 55555544422 23556766643 2333454444432211 1111111 111111
Q ss_pred ccch------hhhhCCCCEEEE-----ChHHHHHHHhcCcCCccCCccEEEEcCccccc
Q psy16633 134 SVQE------PLLVERPDIVVA-----TPARALAHLKAKTLDLKSSLEIVIIDEADLVF 181 (540)
Q Consensus 134 ~~~~------~~l~~~~~Ivv~-----Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~ 181 (540)
..+. ..+ ....+.|. |+..+...++.-.... .++++||||=.+.+.
T Consensus 271 ~e~~~~~~a~~~l-~~~~~~i~d~~~~ti~~i~~~~r~~~~~~-~~~~~vvIDyL~li~ 327 (448)
T PRK05748 271 DDWPKLTIAMGSL-SDAPIYIDDTPGIKVTEIRARCRRLAQEH-GGLGLILIDYLQLIQ 327 (448)
T ss_pred HHHHHHHHHHHHH-hcCCEEEECCCCCCHHHHHHHHHHHHHhc-CCCCEEEEccchhcC
Confidence 1111 112 22344443 4455555443321111 258899999999875
No 400
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=89.99 E-value=1.6 Score=42.83 Aligned_cols=24 Identities=25% Similarity=0.517 Sum_probs=17.9
Q ss_pred HHHHHHhc-C--CcEEEEcCCCchHHH
Q psy16633 47 RAIPLILQ-N--KDVLVRARTGSGKTG 70 (540)
Q Consensus 47 ~ai~~il~-g--kd~li~a~TGsGKT~ 70 (540)
..++.+.+ + +++++.+|||||||.
T Consensus 100 ~~l~~l~~~~~~~~~~i~g~~g~GKtt 126 (270)
T TIGR02858 100 KLLPYLVRNNRVLNTLIISPPQCGKTT 126 (270)
T ss_pred HHHHHHHhCCCeeEEEEEcCCCCCHHH
Confidence 33455544 3 578999999999997
No 401
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.95 E-value=1.5 Score=46.85 Aligned_cols=60 Identities=17% Similarity=0.232 Sum_probs=55.7
Q ss_pred CCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCC
Q psy16633 266 QGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE 325 (540)
Q Consensus 266 ~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~ 325 (540)
.+.+||.+|++.-+......|...|+.+..++++.+..++..++.....|.++++++|++
T Consensus 51 ~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe 110 (470)
T TIGR00614 51 DGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPE 110 (470)
T ss_pred CCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHH
Confidence 568999999999998888889999999999999999999999999999999999999984
No 402
>PRK05973 replicative DNA helicase; Provisional
Probab=89.94 E-value=0.58 Score=44.87 Aligned_cols=83 Identities=16% Similarity=0.127 Sum_probs=47.0
Q ss_pred CCCCHHHHHHHHHCCCC----------CChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCe
Q psy16633 23 FTLFCIPLQAIAKLGWL----------EPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQET 92 (540)
Q Consensus 23 ~~L~~~i~~~l~~~g~~----------~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~ 92 (540)
.+|+..+-+.-.+-||. .+||.. +...-+..|.-++|.|++|+|||...+--+.+.+ ..+.
T Consensus 23 ~~~~~~~~~~a~~~g~~~w~~~~~~~~~~~p~~-~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a--------~~Ge 93 (237)
T PRK05973 23 IPLHEALDRIAAEEGFSSWSLLAAKAAATTPAE-ELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAM--------KSGR 93 (237)
T ss_pred CcHHHHHHHHHHHhccchHHHHHHhccCCCCHH-HhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHH--------hcCC
Confidence 34455555555555664 344522 2333334456799999999999974433333222 2466
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHH
Q psy16633 93 KALVLSPSKELCNQLHKNIQELT 115 (540)
Q Consensus 93 ~vlil~Pt~~La~q~~~~l~~l~ 115 (540)
+++|++-- +=..|+.+.+..++
T Consensus 94 ~vlyfSlE-es~~~i~~R~~s~g 115 (237)
T PRK05973 94 TGVFFTLE-YTEQDVRDRLRALG 115 (237)
T ss_pred eEEEEEEe-CCHHHHHHHHHHcC
Confidence 77777532 23466666666553
No 403
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=89.91 E-value=1.7 Score=45.84 Aligned_cols=113 Identities=16% Similarity=0.181 Sum_probs=54.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEe-ecCccc
Q psy16633 55 NKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDI-SEQVDV 133 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~-~~~~~~ 133 (540)
|.-++|.|+||+|||. +++-++..+.. ..+..+++++.- .-..|+.+.+..... ++....+ .|....
T Consensus 195 G~l~vi~g~pg~GKT~-~~l~~a~~~a~------~~g~~vl~~SlE-m~~~~i~~R~~~~~~----~v~~~~~~~g~l~~ 262 (434)
T TIGR00665 195 SDLIILAARPSMGKTA-FALNIAENAAI------KEGKPVAFFSLE-MSAEQLAMRMLSSES----RVDSQKLRTGKLSD 262 (434)
T ss_pred CeEEEEEeCCCCChHH-HHHHHHHHHHH------hCCCeEEEEeCc-CCHHHHHHHHHHHhc----CCCHHHhccCCCCH
Confidence 3458999999999997 55554444322 235667777532 223444444333221 1111111 111111
Q ss_pred ccc------hhhhhCCCCEEE-E----ChHHHHHHHhcCcCCccCCccEEEEcCcccccc
Q psy16633 134 SVQ------EPLLVERPDIVV-A----TPARALAHLKAKTLDLKSSLEIVIIDEADLVFS 182 (540)
Q Consensus 134 ~~~------~~~l~~~~~Ivv-~----Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~ 182 (540)
... ...+. ...+.| . |+..+...++.-... ..+++||||=.+.+..
T Consensus 263 ~~~~~~~~a~~~l~-~~~l~i~d~~~~~~~~i~~~i~~~~~~--~~~~~vvID~l~~i~~ 319 (434)
T TIGR00665 263 EDWEKLTSAAGKLS-EAPLYIDDTPGLTITELRAKARRLKRE--HGLGLIVIDYLQLMSG 319 (434)
T ss_pred HHHHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHh--cCCCEEEEcchHhcCC
Confidence 111 01122 223444 2 445555544332211 3578999999987753
No 404
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=89.86 E-value=0.44 Score=48.78 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=16.6
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHH
Q psy16633 57 DVLVRARTGSGKTGAFAIPMIQKI 80 (540)
Q Consensus 57 d~li~a~TGsGKT~a~~ipil~~l 80 (540)
..++.||.|+|||.+ ...+...+
T Consensus 38 ~~Ll~G~~G~GKt~~-a~~la~~l 60 (355)
T TIGR02397 38 AYLFSGPRGTGKTSI-ARIFAKAL 60 (355)
T ss_pred EEEEECCCCCCHHHH-HHHHHHHh
Confidence 478999999999974 33444444
No 405
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=89.86 E-value=1.7 Score=43.76 Aligned_cols=42 Identities=12% Similarity=0.132 Sum_probs=26.5
Q ss_pred CCccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEeeec
Q psy16633 167 SSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209 (540)
Q Consensus 167 ~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~SATl 209 (540)
...+++|||+||.|.... ...+.+.++.=|++.-+|+.|..+
T Consensus 107 ~~~kV~iI~~ae~m~~~A-aNaLLKtLEEPp~~t~fiL~t~~~ 148 (319)
T PRK06090 107 NGYRLFVIEPADAMNESA-SNALLKTLEEPAPNCLFLLVTHNQ 148 (319)
T ss_pred CCceEEEecchhhhCHHH-HHHHHHHhcCCCCCeEEEEEECCh
Confidence 678999999999886432 334444555545555555555443
No 406
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.83 E-value=0.68 Score=45.33 Aligned_cols=24 Identities=42% Similarity=0.548 Sum_probs=19.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHHh
Q psy16633 58 VLVRARTGSGKTGAFAIPMIQKIIN 82 (540)
Q Consensus 58 ~li~a~TGsGKT~a~~ipil~~l~~ 82 (540)
++|.+|||||||.+ +.+++.++-+
T Consensus 128 ILVTGpTGSGKSTT-lAamId~iN~ 151 (353)
T COG2805 128 ILVTGPTGSGKSTT-LAAMIDYINK 151 (353)
T ss_pred EEEeCCCCCcHHHH-HHHHHHHHhc
Confidence 89999999999974 6677777744
No 407
>PHA00350 putative assembly protein
Probab=89.70 E-value=1.9 Score=44.53 Aligned_cols=44 Identities=20% Similarity=0.349 Sum_probs=28.1
Q ss_pred CCccEEEEcCccccccCCc-----------------------HHHHHHHHHhCCcccceeeEeeecc
Q psy16633 167 SSLEIVIIDEADLVFSFGY-----------------------EDDMKAVLKFLPKLYQAILASATLS 210 (540)
Q Consensus 167 ~~l~~lViDEah~l~~~~~-----------------------~~~l~~i~~~l~~~~q~il~SATl~ 210 (540)
..=.+|||||||.++.... ...+..+..+-..+.-++++|-.+.
T Consensus 80 p~gaLIViDEaq~~~p~r~~~~~~~~~~~p~~~~~~~~~~~p~~~i~~l~~HRH~G~DIiliTQ~~~ 146 (399)
T PHA00350 80 PRGALYVIDEAQMIFPKRLGFKMANIFKRPFTDFEPHLPEGPENFLEAFMRHRHYNWDIILLTPNIR 146 (399)
T ss_pred CCCCEEEEECchhhcCCCccccccccccccccccccccccCCHHHHHHHHHhcccCceEEEEeCCHH
Confidence 4557999999998875321 1334444444455677888877654
No 408
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.70 E-value=2.1 Score=46.00 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=16.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHHH
Q psy16633 58 VLVRARTGSGKTGAFAIPMIQKI 80 (540)
Q Consensus 58 ~li~a~TGsGKT~a~~ipil~~l 80 (540)
+++.+|.|+|||.++. .+...+
T Consensus 39 ~Lf~GppGtGKTTlA~-~lA~~l 60 (504)
T PRK14963 39 YLFSGPRGVGKTTTAR-LIAMAV 60 (504)
T ss_pred EEEECCCCCCHHHHHH-HHHHHH
Confidence 5999999999998643 334444
No 409
>KOG0733|consensus
Probab=89.68 E-value=1.2 Score=47.76 Aligned_cols=99 Identities=23% Similarity=0.281 Sum_probs=52.7
Q ss_pred EEChHHHHHHHhcCcCCccCCccEEEEcCccccccC-------CcHHHHHHHHHhC---CcccceeeEeeeccHHHHHHH
Q psy16633 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSF-------GYEDDMKAVLKFL---PKLYQAILASATLSEDVLSLK 217 (540)
Q Consensus 148 v~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~-------~~~~~l~~i~~~l---~~~~q~il~SATl~~~~~~~~ 217 (540)
|+-.++.+..+...... +.-.+|.|||+|.|... .-...+.+++..+ ....++..+-||-.+++-
T Consensus 586 VGESErAVR~vFqRAR~--saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiI--- 660 (802)
T KOG0733|consen 586 VGESERAVRQVFQRARA--SAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDII--- 660 (802)
T ss_pred hhhHHHHHHHHHHHhhc--CCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCccc---
Confidence 44444444433332222 45568999999977632 1223444554443 345678889999766543
Q ss_pred HHhcCCCeEEEecCCCCCCCCCeEEEEEEcCcccHHHHHHHHHHh
Q psy16633 218 HLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKL 262 (540)
Q Consensus 218 ~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~ll~~ 262 (540)
+|.+++...-+ .+ -|.-..+..++..+|..+.+.
T Consensus 661 -----DpAiLRPGRlD-----k~-LyV~lPn~~eR~~ILK~~tkn 694 (802)
T KOG0733|consen 661 -----DPAILRPGRLD-----KL-LYVGLPNAEERVAILKTITKN 694 (802)
T ss_pred -----chhhcCCCccC-----ce-eeecCCCHHHHHHHHHHHhcc
Confidence 23333322111 11 133334567788888877764
No 410
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=89.55 E-value=1.6 Score=44.39 Aligned_cols=40 Identities=15% Similarity=0.154 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHhc--CC---cEEEEcCCCchHHHHHHHHHHHHHHh
Q psy16633 42 TLIQERAIPLILQ--NK---DVLVRARTGSGKTGAFAIPMIQKIIN 82 (540)
Q Consensus 42 t~~Q~~ai~~il~--gk---d~li~a~TGsGKT~a~~ipil~~l~~ 82 (540)
.|||+..+..+.+ |+ -.++.||.|.||+..+ ..+.+.++.
T Consensus 3 yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA-~~~A~~LlC 47 (342)
T PRK06964 3 YPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFA-QHLAQGLLC 47 (342)
T ss_pred CcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHH-HHHHHHHcC
Confidence 4667776666553 33 4889999999999754 444455554
No 411
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=89.47 E-value=0.76 Score=50.21 Aligned_cols=45 Identities=31% Similarity=0.340 Sum_probs=29.6
Q ss_pred HHHHCCCCCChHHHHHHHHHHhc--CCcEEEEcCCCchHHHHHHHHHHHHH
Q psy16633 32 AIAKLGWLEPTLIQERAIPLILQ--NKDVLVRARTGSGKTGAFAIPMIQKI 80 (540)
Q Consensus 32 ~l~~~g~~~pt~~Q~~ai~~il~--gkd~li~a~TGsGKT~a~~ipil~~l 80 (540)
.|.++|| .+-|.+.+..++. +.-+++++|||||||.. +..++..+
T Consensus 294 ~l~~lg~---~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTt-l~a~l~~~ 340 (564)
T TIGR02538 294 DIDKLGF---EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVS-LYTALNIL 340 (564)
T ss_pred CHHHcCC---CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHH-HHHHHHhh
Confidence 4567776 3445555555444 34588999999999974 45556554
No 412
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=89.40 E-value=0.37 Score=48.40 Aligned_cols=18 Identities=39% Similarity=0.658 Sum_probs=16.1
Q ss_pred hcCCcEEEEcCCCchHHH
Q psy16633 53 LQNKDVLVRARTGSGKTG 70 (540)
Q Consensus 53 l~gkd~li~a~TGsGKT~ 70 (540)
..|+++++.++||||||.
T Consensus 142 ~~~~~ili~G~tGsGKTT 159 (308)
T TIGR02788 142 ASRKNIIISGGTGSGKTT 159 (308)
T ss_pred hCCCEEEEECCCCCCHHH
Confidence 357899999999999997
No 413
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=89.27 E-value=0.69 Score=49.48 Aligned_cols=45 Identities=22% Similarity=0.336 Sum_probs=29.6
Q ss_pred HHHHCCCCCChHHHHHHHHHHhcC-C-cEEEEcCCCchHHHHHHHHHHHHH
Q psy16633 32 AIAKLGWLEPTLIQERAIPLILQN-K-DVLVRARTGSGKTGAFAIPMIQKI 80 (540)
Q Consensus 32 ~l~~~g~~~pt~~Q~~ai~~il~g-k-d~li~a~TGsGKT~a~~ipil~~l 80 (540)
.|.++|| ++-|.+.+..+... + -+++.+|||||||.. +..++..+
T Consensus 220 ~l~~Lg~---~~~~~~~l~~~~~~~~GlilitGptGSGKTTt-L~a~L~~l 266 (486)
T TIGR02533 220 DLETLGM---SPELLSRFERLIRRPHGIILVTGPTGSGKTTT-LYAALSRL 266 (486)
T ss_pred CHHHcCC---CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH-HHHHHhcc
Confidence 4566776 45566666655553 3 378999999999974 44455544
No 414
>CHL00095 clpC Clp protease ATP binding subunit
Probab=89.23 E-value=2.4 Score=48.74 Aligned_cols=17 Identities=24% Similarity=0.388 Sum_probs=14.8
Q ss_pred CcEEEEcCCCchHHHHH
Q psy16633 56 KDVLVRARTGSGKTGAF 72 (540)
Q Consensus 56 kd~li~a~TGsGKT~a~ 72 (540)
.++++.||+|+|||..+
T Consensus 201 ~n~lL~G~pGvGKTal~ 217 (821)
T CHL00095 201 NNPILIGEPGVGKTAIA 217 (821)
T ss_pred CCeEEECCCCCCHHHHH
Confidence 47999999999999754
No 415
>KOG0741|consensus
Probab=89.13 E-value=5.7 Score=42.04 Aligned_cols=69 Identities=25% Similarity=0.225 Sum_probs=40.7
Q ss_pred cCCCCHHHHHHHHHCCCCCC----hHHHHHHHHHHhcC--------CcEEEEcCCCchHHHHHHHHHHHHHHhhcccccC
Q psy16633 22 TFTLFCIPLQAIAKLGWLEP----TLIQERAIPLILQN--------KDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89 (540)
Q Consensus 22 ~~~L~~~i~~~l~~~g~~~p----t~~Q~~ai~~il~g--------kd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~ 89 (540)
.||.++.-++.....|.-.- |.+=...--.+.+- ..+++.+|.|||||..+.-.++ .+
T Consensus 493 AFG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~----------~S 562 (744)
T KOG0741|consen 493 AFGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIAL----------SS 562 (744)
T ss_pred ccCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHh----------hc
Confidence 78999888888888764322 22222222222221 2599999999999964322211 13
Q ss_pred CCeEEEEEcCc
Q psy16633 90 QETKALVLSPS 100 (540)
Q Consensus 90 ~~~~vlil~Pt 100 (540)
.-+.+=++.|.
T Consensus 563 ~FPFvKiiSpe 573 (744)
T KOG0741|consen 563 DFPFVKIISPE 573 (744)
T ss_pred CCCeEEEeChH
Confidence 45666666663
No 416
>PRK08760 replicative DNA helicase; Provisional
Probab=89.10 E-value=1.6 Score=46.67 Aligned_cols=112 Identities=16% Similarity=0.229 Sum_probs=55.3
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEe-ecCccc
Q psy16633 55 NKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDI-SEQVDV 133 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~-~~~~~~ 133 (540)
|.=++|.|+||+|||. |++-++..+.. ..+..++|.+.- .-..|+...+...... +....+ .|....
T Consensus 229 G~LivIaarPg~GKTa-fal~iA~~~a~------~~g~~V~~fSlE-Ms~~ql~~Rl~a~~s~----i~~~~i~~g~l~~ 296 (476)
T PRK08760 229 TDLIILAARPAMGKTT-FALNIAEYAAI------KSKKGVAVFSME-MSASQLAMRLISSNGR----INAQRLRTGALED 296 (476)
T ss_pred CceEEEEeCCCCChhH-HHHHHHHHHHH------hcCCceEEEecc-CCHHHHHHHHHHhhCC----CcHHHHhcCCCCH
Confidence 3448899999999997 55555544422 235567776532 2234555544433211 111111 111111
Q ss_pred ccch------hhhhCCCCEEEE-----ChHHHHHHHhcCcCCccCCccEEEEcCccccc
Q psy16633 134 SVQE------PLLVERPDIVVA-----TPARALAHLKAKTLDLKSSLEIVIIDEADLVF 181 (540)
Q Consensus 134 ~~~~------~~l~~~~~Ivv~-----Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~ 181 (540)
..+. ..+ ....+.|. |++.+...++.-... ..+++||||=.++|.
T Consensus 297 ~e~~~~~~a~~~l-~~~~l~I~d~~~~t~~~I~~~~r~l~~~--~~~~lVvIDyLql~~ 352 (476)
T PRK08760 297 EDWARVTGAIKML-KETKIFIDDTPGVSPEVLRSKCRRLKRE--HDLGLIVIDYLQLMS 352 (476)
T ss_pred HHHHHHHHHHHHH-hcCCEEEeCCCCCCHHHHHHHHHHHHHh--cCCCEEEEecHHhcC
Confidence 1110 111 12344443 455555544432211 458899999999775
No 417
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=89.09 E-value=1.9 Score=43.72 Aligned_cols=40 Identities=23% Similarity=0.204 Sum_probs=26.0
Q ss_pred CCccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEee
Q psy16633 167 SSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207 (540)
Q Consensus 167 ~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~SA 207 (540)
...+++||||+|.|.... ...+.+.++.-|....+|+.+.
T Consensus 109 ~~~kvviI~~a~~~~~~a-~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 109 SNKKVYIIEHADKMTASA-ANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred cCceEEEeehHhhhCHHH-HHHHHHHhcCCCCCceEEEEeC
Confidence 677899999999875532 3445555555555655665443
No 418
>PRK10867 signal recognition particle protein; Provisional
Probab=89.09 E-value=5.7 Score=41.76 Aligned_cols=52 Identities=17% Similarity=0.223 Sum_probs=26.8
Q ss_pred CCccEEEEcCcccccc-CCcHHHHHHHHHhCCcccceeeEeeeccHHHHHHHH
Q psy16633 167 SSLEIVIIDEADLVFS-FGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKH 218 (540)
Q Consensus 167 ~~l~~lViDEah~l~~-~~~~~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~ 218 (540)
...++||||=+=++.. ...-..+..+.....+..-++.++|+...+......
T Consensus 182 ~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~av~~a~ 234 (433)
T PRK10867 182 NGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQDAVNTAK 234 (433)
T ss_pred cCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHHHHHHHH
Confidence 4567888887764421 112234444444443333366667766555444443
No 419
>PRK06321 replicative DNA helicase; Provisional
Probab=89.08 E-value=2.9 Score=44.59 Aligned_cols=125 Identities=15% Similarity=0.191 Sum_probs=61.0
Q ss_pred ChHHHHHHHHHHhcC----CcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHh
Q psy16633 41 PTLIQERAIPLILQN----KDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTM 116 (540)
Q Consensus 41 pt~~Q~~ai~~il~g----kd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~ 116 (540)
||.+ ..+..+..| .=+++.|++|+|||. |.+-+...+.. ..+..+++.+. -.-..|+...+-..
T Consensus 210 ~tG~--~~LD~~t~Gl~~G~LiiiaarPgmGKTa-fal~ia~~~a~------~~g~~v~~fSL-EMs~~ql~~Rlla~-- 277 (472)
T PRK06321 210 PTHF--IDLDKMINGFSPSNLMILAARPAMGKTA-LALNIAENFCF------QNRLPVGIFSL-EMTVDQLIHRIICS-- 277 (472)
T ss_pred ccCc--HHHHHHhcCCCCCcEEEEEeCCCCChHH-HHHHHHHHHHH------hcCCeEEEEec-cCCHHHHHHHHHHh--
Confidence 5554 234444443 347889999999997 55555554422 23556666642 12234444433221
Q ss_pred hcCCCceEEEe-ecCcccccch------hhhhCCCCEEEE-----ChHHHHHHHhcCcCCccCCccEEEEcCcccccc
Q psy16633 117 KCSRDVKCVDI-SEQVDVSVQE------PLLVERPDIVVA-----TPARALAHLKAKTLDLKSSLEIVIIDEADLVFS 182 (540)
Q Consensus 117 ~~~~~i~~~~~-~~~~~~~~~~------~~l~~~~~Ivv~-----Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~ 182 (540)
.. .+....+ .+......+. ..+ ....+.|- |...+...++.-... ..+++||||=.++|..
T Consensus 278 ~s--~v~~~~i~~~~l~~~e~~~~~~a~~~l-~~~~~~idd~~~~ti~~i~~~~r~~~~~--~~~~lvvIDyLql~~~ 350 (472)
T PRK06321 278 RS--EVESKKISVGDLSGRDFQRIVSVVNEM-QEHTLLIDDQPGLKITDLRARARRMKES--YDIQFLIIDYLQLLSG 350 (472)
T ss_pred hc--CCCHHHhhcCCCCHHHHHHHHHHHHHH-HcCCEEEeCCCCCCHHHHHHHHHHHHHh--cCCCEEEEcchHHcCC
Confidence 11 1221111 1211111111 112 23345554 445555554432221 4588999999998753
No 420
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=89.06 E-value=5.9 Score=41.48 Aligned_cols=51 Identities=10% Similarity=0.130 Sum_probs=27.3
Q ss_pred CccEEEEcCccccccC-CcHHHHHHHHHhCCcccceeeEeeeccHHHHHHHH
Q psy16633 168 SLEIVIIDEADLVFSF-GYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKH 218 (540)
Q Consensus 168 ~l~~lViDEah~l~~~-~~~~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~ 218 (540)
..++|+||=+-++-.. ..-..+..+.....+..-++.++||...+......
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~ 233 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAK 233 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHH
Confidence 4677888777543221 12244444544454444567778877654443333
No 421
>KOG0739|consensus
Probab=89.05 E-value=5.1 Score=39.33 Aligned_cols=49 Identities=16% Similarity=0.305 Sum_probs=30.2
Q ss_pred HHHHhcCC-----cEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHH
Q psy16633 49 IPLILQNK-----DVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHK 109 (540)
Q Consensus 49 i~~il~gk-----d~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~ 109 (540)
+|.+..|+ .+++-+|+|+||+. +.-++.. ..+ ...+-+.+..|+..|..
T Consensus 155 FPqlFtGkR~PwrgiLLyGPPGTGKSY--LAKAVAT---------EAn-STFFSvSSSDLvSKWmG 208 (439)
T KOG0739|consen 155 FPQLFTGKRKPWRGILLYGPPGTGKSY--LAKAVAT---------EAN-STFFSVSSSDLVSKWMG 208 (439)
T ss_pred chhhhcCCCCcceeEEEeCCCCCcHHH--HHHHHHh---------hcC-CceEEeehHHHHHHHhc
Confidence 35666775 49999999999994 3332211 122 55666666666655443
No 422
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.03 E-value=0.33 Score=47.72 Aligned_cols=25 Identities=40% Similarity=0.550 Sum_probs=18.2
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHh
Q psy16633 56 KDVLVRARTGSGKTGAFAIPMIQKIIN 82 (540)
Q Consensus 56 kd~li~a~TGsGKT~a~~ipil~~l~~ 82 (540)
.|+++.+|||||||+. .-.|.++++
T Consensus 98 SNILLiGPTGsGKTlL--AqTLAk~Ln 122 (408)
T COG1219 98 SNILLIGPTGSGKTLL--AQTLAKILN 122 (408)
T ss_pred ccEEEECCCCCcHHHH--HHHHHHHhC
Confidence 4799999999999973 334455543
No 423
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.97 E-value=0.4 Score=51.03 Aligned_cols=16 Identities=25% Similarity=0.358 Sum_probs=13.7
Q ss_pred EEEEcCCCchHHHHHH
Q psy16633 58 VLVRARTGSGKTGAFA 73 (540)
Q Consensus 58 ~li~a~TGsGKT~a~~ 73 (540)
+++.||+|+|||..+.
T Consensus 39 ~Lf~GPpGtGKTTlA~ 54 (472)
T PRK14962 39 YIFAGPRGTGKTTVAR 54 (472)
T ss_pred EEEECCCCCCHHHHHH
Confidence 7999999999997543
No 424
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=88.96 E-value=1.1 Score=45.80 Aligned_cols=43 Identities=30% Similarity=0.472 Sum_probs=27.2
Q ss_pred HHHHHCCCCCChHHHHHHHHHHh-cCCcEEEEcCCCchHHHHHHHHHHHHH
Q psy16633 31 QAIAKLGWLEPTLIQERAIPLIL-QNKDVLVRARTGSGKTGAFAIPMIQKI 80 (540)
Q Consensus 31 ~~l~~~g~~~pt~~Q~~ai~~il-~gkd~li~a~TGsGKT~a~~ipil~~l 80 (540)
..+.++|+ |..+.. .+. .+.-++|.+|||||||.. +-.++..+
T Consensus 115 ~~l~~l~~--~~~~~~----~~~~~~glilI~GpTGSGKTTt-L~aLl~~i 158 (358)
T TIGR02524 115 PKLSKLDL--PAAIID----AIAPQEGIVFITGATGSGKSTL-LAAIIREL 158 (358)
T ss_pred CCHHHcCC--CHHHHH----HHhccCCEEEEECCCCCCHHHH-HHHHHHHH
Confidence 34566676 333332 222 466799999999999973 44455554
No 425
>PF12846 AAA_10: AAA-like domain
Probab=88.91 E-value=0.63 Score=46.06 Aligned_cols=42 Identities=21% Similarity=0.519 Sum_probs=30.5
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHH
Q psy16633 56 KDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCN 105 (540)
Q Consensus 56 kd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~ 105 (540)
.+++|.|+||||||.... .++..++. .+..++++=|..+...
T Consensus 2 ~h~~i~G~tGsGKT~~~~-~l~~~~~~-------~g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLK-NLLEQLIR-------RGPRVVIFDPKGDYSP 43 (304)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHH-------cCCCEEEEcCCchHHH
Confidence 578999999999997655 55555443 5678888877755543
No 426
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=88.89 E-value=0.17 Score=52.55 Aligned_cols=47 Identities=32% Similarity=0.343 Sum_probs=36.1
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHH
Q psy16633 57 DVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQE 113 (540)
Q Consensus 57 d~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~ 113 (540)
++++.|+||||||.++++|-+-. .+..++|+=|--|+........+.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~----------~~~s~vv~D~Kge~~~~t~~~r~~ 47 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLT----------WPGSVVVLDPKGENFELTSEHRRA 47 (384)
T ss_pred CeeEecCCCCCCccEEEccchhc----------CCCCEEEEccchhHHHHHHHHHHH
Confidence 47899999999999998886532 346789999998887665555443
No 427
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=88.79 E-value=1.3 Score=40.34 Aligned_cols=52 Identities=23% Similarity=0.451 Sum_probs=42.5
Q ss_pred CCccEEEEcCccccccCCcH--HHHHHHHHhCCcccceeeEeeeccHHHHHHHH
Q psy16633 167 SSLEIVIIDEADLVFSFGYE--DDMKAVLKFLPKLYQAILASATLSEDVLSLKH 218 (540)
Q Consensus 167 ~~l~~lViDEah~l~~~~~~--~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~ 218 (540)
..+++||+||+=..++.|+- +++..+++..|...-+|+.--..|+.+...+.
T Consensus 114 ~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~AD 167 (178)
T PRK07414 114 GRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAIAD 167 (178)
T ss_pred CCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCC
Confidence 57899999999998888854 67888888888888888888888887766544
No 428
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.74 E-value=1.9 Score=45.05 Aligned_cols=18 Identities=28% Similarity=0.357 Sum_probs=14.7
Q ss_pred cEEEEcCCCchHHHHHHH
Q psy16633 57 DVLVRARTGSGKTGAFAI 74 (540)
Q Consensus 57 d~li~a~TGsGKT~a~~i 74 (540)
..|+.||.|+|||.++.+
T Consensus 40 a~lf~Gp~G~GKtt~A~~ 57 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARV 57 (397)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 388999999999986443
No 429
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=88.74 E-value=0.66 Score=43.30 Aligned_cols=38 Identities=34% Similarity=0.410 Sum_probs=23.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHH
Q psy16633 58 VLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKE 102 (540)
Q Consensus 58 ~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~ 102 (540)
+++.+|||||||.. +-.++..+.. ..+.+++.+--..|
T Consensus 4 ilI~GptGSGKTTl-l~~ll~~~~~------~~~~~i~t~e~~~E 41 (198)
T cd01131 4 VLVTGPTGSGKSTT-LAAMIDYINK------NKTHHILTIEDPIE 41 (198)
T ss_pred EEEECCCCCCHHHH-HHHHHHHhhh------cCCcEEEEEcCCcc
Confidence 78999999999974 3445555422 23445565544434
No 430
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.72 E-value=1.7 Score=47.70 Aligned_cols=38 Identities=24% Similarity=0.333 Sum_probs=21.6
Q ss_pred CCccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeE
Q psy16633 167 SSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILA 205 (540)
Q Consensus 167 ~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~ 205 (540)
...+++||||+|.|....+ +.+...++.-+....+|+.
T Consensus 119 ~~~kVvIIDEa~~L~~~a~-naLLk~LEepp~~tv~Il~ 156 (585)
T PRK14950 119 ARYKVYIIDEVHMLSTAAF-NALLKTLEEPPPHAIFILA 156 (585)
T ss_pred CCeEEEEEeChHhCCHHHH-HHHHHHHhcCCCCeEEEEE
Confidence 6678999999997754322 2333334444444333433
No 431
>PRK04841 transcriptional regulator MalT; Provisional
Probab=88.64 E-value=3.7 Score=47.73 Aligned_cols=42 Identities=19% Similarity=0.306 Sum_probs=34.0
Q ss_pred cEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEeeeccH
Q psy16633 170 EIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSE 211 (540)
Q Consensus 170 ~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~SATl~~ 211 (540)
-+||||++|.+.+......+..++...|.+..+++.|-+.++
T Consensus 123 ~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~ 164 (903)
T PRK04841 123 LYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPP 164 (903)
T ss_pred EEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCC
Confidence 479999999886666667888889999988889888877543
No 432
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=88.38 E-value=1.6 Score=44.56 Aligned_cols=16 Identities=25% Similarity=0.430 Sum_probs=14.1
Q ss_pred cEEEEcCCCchHHHHH
Q psy16633 57 DVLVRARTGSGKTGAF 72 (540)
Q Consensus 57 d~li~a~TGsGKT~a~ 72 (540)
+.|+.+|+|+|||..+
T Consensus 50 SmIl~GPPG~GKTTlA 65 (436)
T COG2256 50 SMILWGPPGTGKTTLA 65 (436)
T ss_pred eeEEECCCCCCHHHHH
Confidence 6999999999999744
No 433
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=88.28 E-value=1.6 Score=48.66 Aligned_cols=39 Identities=31% Similarity=0.306 Sum_probs=23.0
Q ss_pred CCccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEe
Q psy16633 167 SSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206 (540)
Q Consensus 167 ~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~S 206 (540)
...+++||||||.|.... ...+...++.-|....+|+++
T Consensus 117 g~~KV~IIDEa~~LT~~A-~NALLKtLEEPP~~tifILaT 155 (725)
T PRK07133 117 SKYKIYIIDEVHMLSKSA-FNALLKTLEEPPKHVIFILAT 155 (725)
T ss_pred CCCEEEEEEChhhCCHHH-HHHHHHHhhcCCCceEEEEEc
Confidence 678899999999775432 233344444444444444443
No 434
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=88.15 E-value=0.32 Score=51.97 Aligned_cols=49 Identities=35% Similarity=0.441 Sum_probs=37.4
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHH
Q psy16633 56 KDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQEL 114 (540)
Q Consensus 56 kd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l 114 (540)
.++++.||||||||..+++|.+- . .+..+||.=|--||.......++..
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll---~-------~~~s~iV~D~KgEl~~~t~~~r~~~ 93 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLL---N-------YPGSMIVTDPKGELYEKTAGYRKKR 93 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHH---h-------ccCCEEEEECCCcHHHHHHHHHHHC
Confidence 36999999999999999999652 2 2237888899989877666655544
No 435
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=88.11 E-value=0.57 Score=48.63 Aligned_cols=50 Identities=24% Similarity=0.399 Sum_probs=34.3
Q ss_pred HHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHH
Q psy16633 51 LILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLH 108 (540)
Q Consensus 51 ~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~ 108 (540)
.-...+++++.|.||||||. ++-+++..+.. .+.+++|.=|.-+.....+
T Consensus 11 ~~~e~~~~li~G~~GsGKT~-~i~~ll~~~~~-------~g~~~iI~D~kg~~~~~f~ 60 (386)
T PF10412_consen 11 KDSENRHILIIGATGSGKTQ-AIRHLLDQIRA-------RGDRAIIYDPKGEFTERFY 60 (386)
T ss_dssp GGGGGG-EEEEE-TTSSHHH-HHHHHHHHHHH-------TT-EEEEEEETTHHHHHH-
T ss_pred cchhhCcEEEECCCCCCHHH-HHHHHHHHHHH-------cCCEEEEEECCchHHHHhc
Confidence 33456889999999999997 56677777655 4778888888877654433
No 436
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=87.94 E-value=0.28 Score=46.79 Aligned_cols=13 Identities=38% Similarity=0.680 Sum_probs=11.8
Q ss_pred EEEEcCCCchHHH
Q psy16633 58 VLVRARTGSGKTG 70 (540)
Q Consensus 58 ~li~a~TGsGKT~ 70 (540)
++|.|+.|||||.
T Consensus 1 ~vv~G~pGsGKSt 13 (234)
T PF01443_consen 1 IVVHGVPGSGKST 13 (234)
T ss_pred CEEEcCCCCCHHH
Confidence 4789999999997
No 437
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=87.89 E-value=0.75 Score=33.96 Aligned_cols=26 Identities=27% Similarity=0.493 Sum_probs=19.2
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHH
Q psy16633 54 QNKDVLVRARTGSGKTGAFAIPMIQKII 81 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~a~~ipil~~l~ 81 (540)
.|..+++.+++|||||. ++=+++.++
T Consensus 22 ~g~~tli~G~nGsGKST--llDAi~~~L 47 (62)
T PF13555_consen 22 RGDVTLITGPNGSGKST--LLDAIQTVL 47 (62)
T ss_pred CCcEEEEECCCCCCHHH--HHHHHHHHH
Confidence 45679999999999997 444555444
No 438
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.83 E-value=1.7 Score=47.65 Aligned_cols=18 Identities=33% Similarity=0.366 Sum_probs=14.8
Q ss_pred cEEEEcCCCchHHHHHHH
Q psy16633 57 DVLVRARTGSGKTGAFAI 74 (540)
Q Consensus 57 d~li~a~TGsGKT~a~~i 74 (540)
.+|+.+|.|+|||.++.+
T Consensus 40 a~Lf~GPpG~GKTtiAri 57 (624)
T PRK14959 40 AYLFSGTRGVGKTTIARI 57 (624)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 488999999999986543
No 439
>PRK05595 replicative DNA helicase; Provisional
Probab=87.75 E-value=1.1 Score=47.63 Aligned_cols=37 Identities=24% Similarity=0.321 Sum_probs=24.4
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcC
Q psy16633 56 KDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSP 99 (540)
Q Consensus 56 kd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~P 99 (540)
.-++|.|+||+|||. +.+-+...+.. ..+.+++++..
T Consensus 202 ~liviaarpg~GKT~-~al~ia~~~a~------~~g~~vl~fSl 238 (444)
T PRK05595 202 DMILIAARPSMGKTT-FALNIAEYAAL------REGKSVAIFSL 238 (444)
T ss_pred cEEEEEecCCCChHH-HHHHHHHHHHH------HcCCcEEEEec
Confidence 447889999999997 55555444321 24667777754
No 440
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=87.64 E-value=0.3 Score=53.42 Aligned_cols=49 Identities=27% Similarity=0.207 Sum_probs=39.0
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHH
Q psy16633 56 KDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQEL 114 (540)
Q Consensus 56 kd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l 114 (540)
.++++.||||||||..+++|-+-. -+.-+||+=|--|+........++.
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~----------~~~S~VV~DpKGEl~~~Ta~~R~~~ 207 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLF----------WEDSVVVHDIKLENYELTSGWREKQ 207 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHh----------CCCCEEEEeCcHHHHHHHHHHHHHC
Confidence 468999999999999999997743 2456889999999987766666554
No 441
>PRK13764 ATPase; Provisional
Probab=87.64 E-value=1.2 Score=48.60 Aligned_cols=26 Identities=23% Similarity=0.482 Sum_probs=20.4
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHH
Q psy16633 54 QNKDVLVRARTGSGKTGAFAIPMIQKI 80 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~a~~ipil~~l 80 (540)
.++++++.+|||||||. ++-.++..+
T Consensus 256 ~~~~ILIsG~TGSGKTT-ll~AL~~~i 281 (602)
T PRK13764 256 RAEGILIAGAPGAGKST-FAQALAEFY 281 (602)
T ss_pred cCCEEEEECCCCCCHHH-HHHHHHHHH
Confidence 46789999999999997 455566555
No 442
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=87.59 E-value=2.3 Score=45.52 Aligned_cols=17 Identities=41% Similarity=0.458 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCchHHHH
Q psy16633 55 NKDVLVRARTGSGKTGA 71 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a 71 (540)
.+.+++.+|+|+|||..
T Consensus 216 p~GILLyGPPGTGKT~L 232 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLI 232 (512)
T ss_pred CcceEEECCCCCcHHHH
Confidence 36799999999999973
No 443
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=87.54 E-value=11 Score=39.73 Aligned_cols=16 Identities=38% Similarity=0.528 Sum_probs=13.8
Q ss_pred EEEEcCCCchHHHHHH
Q psy16633 58 VLVRARTGSGKTGAFA 73 (540)
Q Consensus 58 ~li~a~TGsGKT~a~~ 73 (540)
+++.+++|+|||.+..
T Consensus 102 i~~vG~~GsGKTTtaa 117 (428)
T TIGR00959 102 ILMVGLQGSGKTTTCG 117 (428)
T ss_pred EEEECCCCCcHHHHHH
Confidence 7899999999998643
No 444
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=87.42 E-value=0.9 Score=46.35 Aligned_cols=43 Identities=26% Similarity=0.295 Sum_probs=27.2
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHH
Q psy16633 54 QNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKEL 103 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~L 103 (540)
.+..+++.+|||||||.. +-.++..+.. ..+.+++.+--..|+
T Consensus 121 ~~g~ili~G~tGSGKTT~-l~al~~~i~~------~~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTT-LASMIDYINK------NAAGHIITIEDPIEY 163 (343)
T ss_pred cCcEEEEECCCCCCHHHH-HHHHHHhhCc------CCCCEEEEEcCChhh
Confidence 356799999999999974 4445554421 234566666544444
No 445
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=87.38 E-value=8.8 Score=34.57 Aligned_cols=15 Identities=33% Similarity=0.452 Sum_probs=12.8
Q ss_pred EEEEcCCCchHHHHH
Q psy16633 58 VLVRARTGSGKTGAF 72 (540)
Q Consensus 58 ~li~a~TGsGKT~a~ 72 (540)
+++.+++|+|||...
T Consensus 3 ~~~~G~~G~GKTt~~ 17 (173)
T cd03115 3 ILLVGLQGVGKTTTA 17 (173)
T ss_pred EEEECCCCCCHHHHH
Confidence 578899999999853
No 446
>KOG0741|consensus
Probab=87.22 E-value=0.9 Score=47.75 Aligned_cols=40 Identities=25% Similarity=0.297 Sum_probs=26.6
Q ss_pred CCccEEEEcCcccccc--------CC-cHHHHHHHHHhCCc-----ccceeeEe
Q psy16633 167 SSLEIVIIDEADLVFS--------FG-YEDDMKAVLKFLPK-----LYQAILAS 206 (540)
Q Consensus 167 ~~l~~lViDEah~l~~--------~~-~~~~l~~i~~~l~~-----~~q~il~S 206 (540)
+.+.+||+||+|.+.. .| ....+.+++..+.. +.-+|+|+
T Consensus 323 SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMT 376 (744)
T KOG0741|consen 323 SGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMT 376 (744)
T ss_pred CCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEecc
Confidence 7899999999997652 12 34567777777642 34455554
No 447
>KOG0742|consensus
Probab=87.21 E-value=1.1 Score=45.67 Aligned_cols=16 Identities=31% Similarity=0.513 Sum_probs=14.6
Q ss_pred CcEEEEcCCCchHHHH
Q psy16633 56 KDVLVRARTGSGKTGA 71 (540)
Q Consensus 56 kd~li~a~TGsGKT~a 71 (540)
+|++..+|+|+|||++
T Consensus 385 RNilfyGPPGTGKTm~ 400 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMF 400 (630)
T ss_pred hheeeeCCCCCCchHH
Confidence 6899999999999974
No 448
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=87.10 E-value=3.4 Score=43.83 Aligned_cols=91 Identities=15% Similarity=0.228 Sum_probs=51.0
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccc
Q psy16633 55 NKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVS 134 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~ 134 (540)
|.-+++.+++|+|||.. ++-++..+.. .+.+++|+..- +-..|+......++. ...-..+..
T Consensus 94 GsvilI~G~pGsGKTTL-~lq~a~~~a~-------~g~kvlYvs~E-Es~~qi~~ra~rlg~----~~~~l~~~~----- 155 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTL-LLQVACQLAK-------NQMKVLYVSGE-ESLQQIKMRAIRLGL----PEPNLYVLS----- 155 (454)
T ss_pred CeEEEEEcCCCCCHHHH-HHHHHHHHHh-------cCCcEEEEECc-CCHHHHHHHHHHcCC----ChHHeEEcC-----
Confidence 34589999999999974 4444443322 34578888753 444565554444321 111000000
Q ss_pred cchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCcccccc
Q psy16633 135 VQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFS 182 (540)
Q Consensus 135 ~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~ 182 (540)
. .+.+.+...+.. .+.+++|||.+..+..
T Consensus 156 --------e-----~~~~~I~~~i~~------~~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 156 --------E-----TNWEQICANIEE------ENPQACVIDSIQTLYS 184 (454)
T ss_pred --------C-----CCHHHHHHHHHh------cCCcEEEEecchhhcc
Confidence 0 134555555543 3567899999987653
No 449
>PRK14701 reverse gyrase; Provisional
Probab=87.06 E-value=2.3 Score=52.00 Aligned_cols=60 Identities=17% Similarity=0.248 Sum_probs=52.9
Q ss_pred CCcEEEEecChhhHHHHHHHHHhC------CCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCC
Q psy16633 266 QGKTIIFVNTVDKCYKLKLYLEQF------KISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE 325 (540)
Q Consensus 266 ~~k~IIF~~s~~~~~~l~~~L~~~------~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~ 325 (540)
+.+++|.+|++.-+..+...|+.+ ++.+..+||+++..++..+++.+.+|..+|||+|+.
T Consensus 122 g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 122 GKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred CCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 458999999999998888888763 467788999999999999999999999999999984
No 450
>PRK05636 replicative DNA helicase; Provisional
Probab=86.97 E-value=2.9 Score=44.98 Aligned_cols=35 Identities=20% Similarity=0.431 Sum_probs=21.7
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEE
Q psy16633 56 KDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVL 97 (540)
Q Consensus 56 kd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil 97 (540)
.-+++.|+||+|||. |.+-++..+.. ..+..+++.
T Consensus 266 ~Liiiaarpg~GKT~-~al~~a~~~a~------~~g~~v~~f 300 (505)
T PRK05636 266 QMIIVAARPGVGKST-LALDFMRSASI------KHNKASVIF 300 (505)
T ss_pred ceEEEEeCCCCCHHH-HHHHHHHHHHH------hCCCeEEEE
Confidence 347889999999997 44444433321 234566666
No 451
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=86.72 E-value=0.59 Score=48.99 Aligned_cols=50 Identities=18% Similarity=0.373 Sum_probs=35.6
Q ss_pred HHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHH
Q psy16633 49 IPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQ 106 (540)
Q Consensus 49 i~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q 106 (540)
+|.-...++++|.|+||||||.+ +..++..+.. .+.+++|+=|.-++...
T Consensus 36 ~~~~~~~~h~~i~g~tGsGKt~~-i~~l~~~~~~-------~~~~~vi~D~kg~~~~~ 85 (410)
T cd01127 36 FPKDAEEAHTMIIGTTGTGKTTQ-IRELLASIRA-------RGDRAIIYDPNGGFVSK 85 (410)
T ss_pred CCcchhhccEEEEcCCCCCHHHH-HHHHHHHHHh-------cCCCEEEEeCCcchhHh
Confidence 44444567999999999999974 4455555443 46689999998886543
No 452
>KOG0732|consensus
Probab=86.71 E-value=1.3 Score=50.63 Aligned_cols=61 Identities=21% Similarity=0.157 Sum_probs=37.1
Q ss_pred EEChHHHHHHHhcCcCCccCCccEEEEcCcccccc-------CCcH---HHHHHHHHhCCcccceeeEeeecc
Q psy16633 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFS-------FGYE---DDMKAVLKFLPKLYQAILASATLS 210 (540)
Q Consensus 148 v~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~-------~~~~---~~l~~i~~~l~~~~q~il~SATl~ 210 (540)
|+.+++=+.++...... ...+++.+||+|-+-= .-+. ..+..++..++...|+++.+||..
T Consensus 345 vgEaERqlrllFeeA~k--~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnR 415 (1080)
T KOG0732|consen 345 VGEAERQLRLLFEEAQK--TQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNR 415 (1080)
T ss_pred cCcHHHHHHHHHHHHhc--cCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCC
Confidence 67777755555443222 4567899999993321 0111 233344445667789999999954
No 453
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.71 E-value=1.7 Score=47.87 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=23.3
Q ss_pred CCccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEe
Q psy16633 167 SSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206 (540)
Q Consensus 167 ~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~S 206 (540)
...+++||||+|.|.... .+.+...++.-|...-+|+++
T Consensus 126 ~~~KVvIIdEad~Lt~~a-~naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 126 GRYRVYIIDEVHMLSTAA-FNAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred CCCEEEEEeChhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 678899999999886432 223344444444444445544
No 454
>KOG2028|consensus
Probab=86.65 E-value=1.7 Score=43.69 Aligned_cols=49 Identities=16% Similarity=0.278 Sum_probs=29.6
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHH
Q psy16633 57 DVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQE 113 (540)
Q Consensus 57 d~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~ 113 (540)
.+++.+|.|+|||..+- ++... ......+.+=+.-|.+-.+.+...+++
T Consensus 164 SmIlWGppG~GKTtlAr------lia~t--sk~~SyrfvelSAt~a~t~dvR~ife~ 212 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLAR------LIAST--SKKHSYRFVELSATNAKTNDVRDIFEQ 212 (554)
T ss_pred ceEEecCCCCchHHHHH------HHHhh--cCCCceEEEEEeccccchHHHHHHHHH
Confidence 69999999999996332 22110 112345666667666665555555544
No 455
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=86.64 E-value=2.2 Score=45.73 Aligned_cols=60 Identities=18% Similarity=0.205 Sum_probs=39.4
Q ss_pred HHHHHHhcC-----CcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHH
Q psy16633 47 RAIPLILQN-----KDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELT 115 (540)
Q Consensus 47 ~ai~~il~g-----kd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~ 115 (540)
..+..++.| .-+++.+|+|+|||...+-- +.... ..+.+++|++ .-|-..|+.+....++
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f-~~~~~-------~~ge~~~y~s-~eEs~~~i~~~~~~lg 314 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKF-LENAC-------ANKERAILFA-YEESRAQLLRNAYSWG 314 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHH-HHHHH-------HCCCeEEEEE-eeCCHHHHHHHHHHcC
Confidence 345555654 46999999999999743322 22222 2567888876 5566677777777664
No 456
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=86.64 E-value=1.7 Score=44.01 Aligned_cols=17 Identities=35% Similarity=0.397 Sum_probs=14.6
Q ss_pred CcEEEEcCCCchHHHHH
Q psy16633 56 KDVLVRARTGSGKTGAF 72 (540)
Q Consensus 56 kd~li~a~TGsGKT~a~ 72 (540)
..+++.||+|+|||..+
T Consensus 52 ~~~ll~GppG~GKT~la 68 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLA 68 (328)
T ss_pred CcEEEECCCCccHHHHH
Confidence 46999999999999743
No 457
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=86.27 E-value=3.4 Score=40.91 Aligned_cols=27 Identities=19% Similarity=0.105 Sum_probs=21.4
Q ss_pred cChhhHHHHHHHHHhCCCceEEeCCCCC
Q psy16633 274 NTVDKCYKLKLYLEQFKISTCVLNSELP 301 (540)
Q Consensus 274 ~s~~~~~~l~~~L~~~~~~~~~l~~~l~ 301 (540)
.|+.-|+.|+..|. .++.+.+.|-++.
T Consensus 258 RSV~~~e~l~~~l~-~~~~v~~~Hrd~~ 284 (288)
T PRK05416 258 RSVAIAERLAERLS-KGYNVQVRHRDLE 284 (288)
T ss_pred cHHHHHHHHHHHHh-CCCcEEEEeCccc
Confidence 34677889999994 5889999998875
No 458
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=86.26 E-value=1.3 Score=52.69 Aligned_cols=61 Identities=21% Similarity=0.328 Sum_probs=48.6
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhh
Q psy16633 54 QNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMK 117 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~ 117 (540)
.+.+++|.|..|||||.+..--++..++... .....++|+++-|+.-+.++.+++..-...
T Consensus 15 ~~~~~lveASAGSGKT~vL~~r~lrlLl~~~---~~~v~~ILvvTFT~aAa~Emk~RI~~~L~~ 75 (1139)
T COG1074 15 PGQSVLVEASAGTGKTFVLAERVLRLLLEGG---PLDVDEILVVTFTKAAAAEMKERIRDRLKE 75 (1139)
T ss_pred CCCcEEEEEcCCCCchhHHHHHHHHHHhhcC---CCChhHeeeeeccHHHHHHHHHHHHHHHHH
Confidence 4679999999999999987777788777621 235678999999999998888877765444
No 459
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=86.15 E-value=1.9 Score=47.22 Aligned_cols=33 Identities=30% Similarity=0.247 Sum_probs=22.8
Q ss_pred CCccEEEEcCccccccCCcHHHHHHHHHhCCcc
Q psy16633 167 SSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199 (540)
Q Consensus 167 ~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~ 199 (540)
++-.++|+|||-.-+|..-+..+...+..+.+.
T Consensus 482 ~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~ 514 (567)
T COG1132 482 RNPPILILDEATSALDTETEALIQDALKKLLKG 514 (567)
T ss_pred cCCCEEEEeccccccCHHhHHHHHHHHHHHhcC
Confidence 445788999998877777676666666544444
No 460
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=86.11 E-value=0.76 Score=44.97 Aligned_cols=27 Identities=30% Similarity=0.393 Sum_probs=21.4
Q ss_pred HHHHHHHhcCCcEEEEcCCCchHHHHH
Q psy16633 46 ERAIPLILQNKDVLVRARTGSGKTGAF 72 (540)
Q Consensus 46 ~~ai~~il~gkd~li~a~TGsGKT~a~ 72 (540)
++++..+..|+++++.+|+|+|||..+
T Consensus 12 ~~~l~~l~~g~~vLL~G~~GtGKT~lA 38 (262)
T TIGR02640 12 SRALRYLKSGYPVHLRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHHHhcCCeEEEEcCCCCCHHHHH
Confidence 344555667899999999999999754
No 461
>PRK13695 putative NTPase; Provisional
Probab=86.08 E-value=11 Score=34.11 Aligned_cols=17 Identities=24% Similarity=0.321 Sum_probs=13.8
Q ss_pred cEEEEcCCCchHHHHHH
Q psy16633 57 DVLVRARTGSGKTGAFA 73 (540)
Q Consensus 57 d~li~a~TGsGKT~a~~ 73 (540)
.+++.++.|+|||....
T Consensus 2 ~i~ltG~~G~GKTTll~ 18 (174)
T PRK13695 2 KIGITGPPGVGKTTLVL 18 (174)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999997443
No 462
>PRK09165 replicative DNA helicase; Provisional
Probab=86.07 E-value=2.7 Score=45.16 Aligned_cols=118 Identities=14% Similarity=0.170 Sum_probs=55.9
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHhhcc--------cccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEe
Q psy16633 56 KDVLVRARTGSGKTGAFAIPMIQKIINLKQ--------TAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDI 127 (540)
Q Consensus 56 kd~li~a~TGsGKT~a~~ipil~~l~~~~~--------~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~ 127 (540)
.-++|.|+||+|||. +.+-++..+..... .....+..++|++. -.-..|+...+-..... +....+
T Consensus 218 ~livIaarpg~GKT~-~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSl-EMs~~ql~~R~la~~s~----v~~~~i 291 (497)
T PRK09165 218 DLIILAGRPSMGKTA-LATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSL-EMSAEQLATRILSEQSE----ISSSKI 291 (497)
T ss_pred ceEEEEeCCCCChHH-HHHHHHHHHHHhhcccccccccccccCCCeEEEEeC-cCCHHHHHHHHHHHhcC----CCHHHH
Confidence 448899999999997 44444433322100 00013566777743 22334555544333211 111111
Q ss_pred -ecCcccccch------hhhhCCCCEEEE-----ChHHHHHHHhcCcCCccCCccEEEEcCcccccc
Q psy16633 128 -SEQVDVSVQE------PLLVERPDIVVA-----TPARALAHLKAKTLDLKSSLEIVIIDEADLVFS 182 (540)
Q Consensus 128 -~~~~~~~~~~------~~l~~~~~Ivv~-----Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~ 182 (540)
.|......+. ..+ ....+.|. |++.+...+++-... ..+++||||=.++|..
T Consensus 292 ~~~~l~~~e~~~l~~a~~~l-~~~~l~I~d~~~~ti~~i~~~ir~l~~~--~~~~lvvIDyLqli~~ 355 (497)
T PRK09165 292 RRGKISEEDFEKLVDASQEL-QKLPLYIDDTPALSISQLRARARRLKRQ--HGLDLLVVDYLQLIRG 355 (497)
T ss_pred hcCCCCHHHHHHHHHHHHHH-hcCCeEEeCCCCCCHHHHHHHHHHHHHh--cCCCEEEEcchHhccC
Confidence 1111111111 111 12344443 455555555432211 4588999999998763
No 463
>PF14516 AAA_35: AAA-like domain
Probab=86.02 E-value=1.8 Score=43.93 Aligned_cols=47 Identities=15% Similarity=0.306 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhc-CCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEE
Q psy16633 43 LIQERAIPLILQ-NKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVL 97 (540)
Q Consensus 43 ~~Q~~ai~~il~-gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil 97 (540)
|+.++++..+.+ |.-+.|.||-.+|||. .+..+++.+.+ .+.+++++
T Consensus 18 ~~e~~~~~~i~~~G~~~~I~apRq~GKTS-ll~~l~~~l~~-------~~~~~v~i 65 (331)
T PF14516_consen 18 PAEQECYQEIVQPGSYIRIKAPRQMGKTS-LLLRLLERLQQ-------QGYRCVYI 65 (331)
T ss_pred HHHHHHHHHHhcCCCEEEEECcccCCHHH-HHHHHHHHHHH-------CCCEEEEE
Confidence 589999999988 8999999999999997 35555555533 35666655
No 464
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=85.75 E-value=4 Score=47.28 Aligned_cols=86 Identities=16% Similarity=0.187 Sum_probs=68.8
Q ss_pred HHHHHHHhcccCCcEEEEecChhhHHHHHHHHH----hCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCC
Q psy16633 255 ILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLE----QFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALET 330 (540)
Q Consensus 255 ~l~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~----~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~ 330 (540)
.+.+.++.-..++++.|.|||.=-|+.-+.-++ .+.+++..++.--+.++...+++...+|.++|+|.|-.
T Consensus 632 AmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHr----- 706 (1139)
T COG1197 632 AMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHR----- 706 (1139)
T ss_pred HHHHHHHHhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechH-----
Confidence 455555555566789999999877666655554 45788899999999999999999999999999999973
Q ss_pred cccccccccccccCccccccccCCCCCcCEEE
Q psy16633 331 PQINSTNNRKRKRDKESGVSRGIDFQFVSNVI 362 (540)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi 362 (540)
.++.+|-|.++..+|
T Consensus 707 -----------------LL~kdv~FkdLGLlI 721 (1139)
T COG1197 707 -----------------LLSKDVKFKDLGLLI 721 (1139)
T ss_pred -----------------hhCCCcEEecCCeEE
Confidence 677777788887776
No 465
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=85.69 E-value=2.1 Score=40.51 Aligned_cols=44 Identities=16% Similarity=0.049 Sum_probs=25.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCc
Q psy16633 55 NKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPS 100 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt 100 (540)
|+-+.+.+++|+|||...+.-+...+ ... ........++++..-
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~-~~~-~~~g~~~~v~yi~~e 62 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQ-LPG-ELGGLEGKVVYIDTE 62 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhh-ccc-ccCCCcceEEEEecC
Confidence 45689999999999985443322222 100 000123677777654
No 466
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=85.67 E-value=1 Score=44.25 Aligned_cols=41 Identities=24% Similarity=0.461 Sum_probs=28.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHH
Q psy16633 58 VLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELC 104 (540)
Q Consensus 58 ~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La 104 (540)
.+|-|||||||+- ++..|+..+. .....-.|++|+|++...
T Consensus 90 ~~VYGPTG~GKSq-----LlRNLis~~l-I~P~PETVfFItP~~~mI 130 (369)
T PF02456_consen 90 GVVYGPTGSGKSQ-----LLRNLISCQL-IQPPPETVFFITPQKDMI 130 (369)
T ss_pred EEEECCCCCCHHH-----HHHHhhhcCc-ccCCCCceEEECCCCCCC
Confidence 5789999999995 3344444221 234567899999998544
No 467
>KOG2004|consensus
Probab=85.66 E-value=1.7 Score=47.41 Aligned_cols=48 Identities=29% Similarity=0.328 Sum_probs=32.0
Q ss_pred EEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCCcHHHHHHHHHhCC
Q psy16633 146 IVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLP 197 (540)
Q Consensus 146 Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~l~ 197 (540)
-|=+-||++.+.++.-... --++.|||+|.+.+...++--..+++.+.
T Consensus 487 YVGAMPGkiIq~LK~v~t~----NPliLiDEvDKlG~g~qGDPasALLElLD 534 (906)
T KOG2004|consen 487 YVGAMPGKIIQCLKKVKTE----NPLILIDEVDKLGSGHQGDPASALLELLD 534 (906)
T ss_pred eeccCChHHHHHHHhhCCC----CceEEeehhhhhCCCCCCChHHHHHHhcC
Confidence 3445799999999875432 23799999999884334444455555553
No 468
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=85.65 E-value=1.5 Score=42.09 Aligned_cols=79 Identities=11% Similarity=0.171 Sum_probs=58.6
Q ss_pred CCceEEeCCCCCHHHHHHHHHHHhcCC----ccEEEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEeCC
Q psy16633 290 KISTCVLNSELPAKARCHAVYQFNQGL----YDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFD 365 (540)
Q Consensus 290 ~~~~~~l~~~l~~~~r~~i~~~F~~g~----~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d 365 (540)
++.+.++||+.+... -.|.++. ..|+|+-+ .++||+.++++.+.....
T Consensus 110 ~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn-----------------------~LsRGlTleGL~vsYf~R 161 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGN-----------------------KLSRGLTLEGLTVSYFLR 161 (239)
T ss_pred CceEEEEeCCCcccc-----ccccccccCCceEEEECCc-----------------------cccCceeECCcEEEEecC
Confidence 577888887654433 3454443 78999998 999999999999988888
Q ss_pred CCCCcccchhcccccc-CCCCCceEEEEeccc
Q psy16633 366 FPLDIQCYIHRAGRTA-RGKNQGTALSFVSLR 396 (540)
Q Consensus 366 ~p~s~~~yiqr~GRag-R~g~~g~~i~~~~~~ 396 (540)
-+...+++.||.=--| |.|-.+.|=.+.++.
T Consensus 162 ~s~~~DTL~QmgRwFGYR~gY~dl~Ri~~~~~ 193 (239)
T PF10593_consen 162 NSKQYDTLMQMGRWFGYRPGYEDLCRIYMPEE 193 (239)
T ss_pred CCchHHHHHHHhhcccCCcccccceEEecCHH
Confidence 8889999999943344 555567777776544
No 469
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.62 E-value=2.9 Score=46.16 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=16.9
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHH
Q psy16633 56 KDVLVRARTGSGKTGAFAIPMIQKI 80 (540)
Q Consensus 56 kd~li~a~TGsGKT~a~~ipil~~l 80 (540)
..+|+.||.|+|||.++. .+...+
T Consensus 39 ~a~Lf~Gp~G~GKttlA~-~lAk~L 62 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSAR-ILAKSL 62 (620)
T ss_pred ceEEEECCCCCChHHHHH-HHHHHh
Confidence 347999999999997543 333444
No 470
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=85.52 E-value=1.3 Score=42.16 Aligned_cols=42 Identities=21% Similarity=0.516 Sum_probs=31.3
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHH
Q psy16633 55 NKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKEL 103 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~L 103 (540)
++++.|.|.||||||.. +--+++.+.+ ..+..++|+=|.=|=
T Consensus 23 ~~H~~I~G~TGsGKS~~-~~~ll~~l~~------~~~~~~ii~D~~GEY 64 (229)
T PF01935_consen 23 NRHIAIFGTTGSGKSNT-VKVLLEELLK------KKGAKVIIFDPHGEY 64 (229)
T ss_pred cceEEEECCCCCCHHHH-HHHHHHHHHh------cCCCCEEEEcCCCcc
Confidence 47899999999999974 5556666653 356678888887554
No 471
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=85.50 E-value=2.7 Score=38.28 Aligned_cols=39 Identities=15% Similarity=0.137 Sum_probs=26.6
Q ss_pred CCccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEe
Q psy16633 167 SSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206 (540)
Q Consensus 167 ~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~S 206 (540)
.+-+++++||.-.-+|......+..++..+... .+++++
T Consensus 115 ~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~-~tii~~ 153 (178)
T cd03247 115 QDAPIVLLDEPTVGLDPITERQLLSLIFEVLKD-KTLIWI 153 (178)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHcCC-CEEEEE
Confidence 567899999999877776666666666655443 344443
No 472
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=85.34 E-value=3 Score=47.54 Aligned_cols=17 Identities=24% Similarity=0.255 Sum_probs=14.5
Q ss_pred CCcEEEEcCCCchHHHH
Q psy16633 55 NKDVLVRARTGSGKTGA 71 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a 71 (540)
|..+++.+|+|+|||..
T Consensus 347 ~~~lll~GppG~GKT~l 363 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSL 363 (775)
T ss_pred CceEEEECCCCCCHHHH
Confidence 45699999999999963
No 473
>PHA00012 I assembly protein
Probab=85.30 E-value=8.6 Score=38.49 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=18.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHHH
Q psy16633 58 VLVRARTGSGKTGAFAIPMIQKI 80 (540)
Q Consensus 58 ~li~a~TGsGKT~a~~ipil~~l 80 (540)
-++.+..|||||+.++.-++..+
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L 26 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKL 26 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHH
Confidence 47899999999998776555554
No 474
>PRK09087 hypothetical protein; Validated
Probab=85.25 E-value=1.8 Score=41.24 Aligned_cols=41 Identities=12% Similarity=0.046 Sum_probs=24.6
Q ss_pred cEEEEcCccccccCCcHHHHHHHHHhCCc-ccceeeEeeeccHH
Q psy16633 170 EIVIIDEADLVFSFGYEDDMKAVLKFLPK-LYQAILASATLSED 212 (540)
Q Consensus 170 ~~lViDEah~l~~~~~~~~l~~i~~~l~~-~~q~il~SATl~~~ 212 (540)
++|++|++|.+. .-...+..++..+.. ..++++.|.|.|..
T Consensus 89 ~~l~iDDi~~~~--~~~~~lf~l~n~~~~~g~~ilits~~~p~~ 130 (226)
T PRK09087 89 GPVLIEDIDAGG--FDETGLFHLINSVRQAGTSLLMTSRLWPSS 130 (226)
T ss_pred CeEEEECCCCCC--CCHHHHHHHHHHHHhCCCeEEEECCCChHH
Confidence 379999999763 234556666666554 44555445444443
No 475
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=85.25 E-value=3.1 Score=40.74 Aligned_cols=28 Identities=18% Similarity=0.159 Sum_probs=23.9
Q ss_pred cChhhHHHHHHHHHhCCCceEEeCCCCC
Q psy16633 274 NTVDKCYKLKLYLEQFKISTCVLNSELP 301 (540)
Q Consensus 274 ~s~~~~~~l~~~L~~~~~~~~~l~~~l~ 301 (540)
.|+..|+.|+..|++.+..+.+.|-++.
T Consensus 255 RSV~iae~La~~L~~~~~~v~v~HRdl~ 282 (284)
T PF03668_consen 255 RSVAIAERLAERLREKGYTVVVRHRDLE 282 (284)
T ss_pred cHHHHHHHHHHHHHhcCCcceEEcCCCC
Confidence 3577899999999999999999998775
No 476
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=85.25 E-value=2.8 Score=45.53 Aligned_cols=25 Identities=20% Similarity=0.412 Sum_probs=18.6
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHH
Q psy16633 54 QNKDVLVRARTGSGKTGAFAIPMIQKI 80 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~a~~ipil~~l 80 (540)
.|+-+.+.||+|||||. ++-++..+
T Consensus 360 ~G~~vaIvG~SGsGKST--Ll~lL~g~ 384 (529)
T TIGR02868 360 PGERVAILGPSGSGKST--LLMLLTGL 384 (529)
T ss_pred CCCEEEEECCCCCCHHH--HHHHHhcC
Confidence 47889999999999996 33444443
No 477
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=85.25 E-value=2.4 Score=45.83 Aligned_cols=52 Identities=15% Similarity=0.352 Sum_probs=43.2
Q ss_pred EEEEecChhhHHHHHHHHHhC-----CCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCC
Q psy16633 269 TIIFVNTVDKCYKLKLYLEQF-----KISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324 (540)
Q Consensus 269 ~IIF~~s~~~~~~l~~~L~~~-----~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~ 324 (540)
+||+++|++-|..++..+..+ ++.++.+.|+.+...+... ++.| .+|+|||+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~---l~~~-~~ivVaTP 158 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEA---LKRG-VDIVVATP 158 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHH---HhcC-CCEEEECc
Confidence 899999999999998887653 5678999999988776644 4446 99999998
No 478
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=85.24 E-value=0.48 Score=52.51 Aligned_cols=48 Identities=23% Similarity=0.246 Sum_probs=36.4
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHH
Q psy16633 56 KDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQE 113 (540)
Q Consensus 56 kd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~ 113 (540)
.++++.||||||||..+++|-+-. .+..+||+=|--|+........++
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~----------~~gS~VV~DpKGE~~~~Ta~~R~~ 187 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLT----------FKGSVIALDVKGELFELTSRARKA 187 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhc----------CCCCEEEEeCCchHHHHHHHHHHh
Confidence 379999999999999999996533 234688888888887665555544
No 479
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=85.22 E-value=1.6 Score=48.22 Aligned_cols=52 Identities=23% Similarity=0.342 Sum_probs=34.4
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHH--HHHHHHHHHHHH
Q psy16633 55 NKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKE--LCNQLHKNIQEL 114 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~--La~q~~~~l~~l 114 (540)
.++++|.|+||+|||..+..-+.+.+ . .+..++++=|--. |...+...++..
T Consensus 176 ~~H~lv~G~TGsGKT~l~~~l~~q~i-~-------~g~~viv~DpKgD~~l~~~~~~~~~~~ 229 (634)
T TIGR03743 176 VGHTLVLGTTGVGKTRLAELLITQDI-R-------RGDVVIVIDPKGDADLKRRMRAEAKRA 229 (634)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHH-H-------cCCeEEEEeCCCchHHHHHHHHHHHHh
Confidence 36799999999999986644444443 3 3567788877754 555555554444
No 480
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=84.69 E-value=3.5 Score=37.70 Aligned_cols=41 Identities=17% Similarity=0.203 Sum_probs=27.2
Q ss_pred CCccEEEEcCccccccCCcHHHHHHHHHhCCc-ccceeeEee
Q psy16633 167 SSLEIVIIDEADLVFSFGYEDDMKAVLKFLPK-LYQAILASA 207 (540)
Q Consensus 167 ~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~-~~q~il~SA 207 (540)
..-+++++||...-++......+...+..+.+ ..++++.|-
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 45688999999988887666666555554433 355555544
No 481
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=84.53 E-value=1.6 Score=42.62 Aligned_cols=53 Identities=25% Similarity=0.352 Sum_probs=35.9
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHH
Q psy16633 54 QNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELT 115 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~ 115 (540)
.|+.++|.+++|||||. |.+-.+....+ .+.++++++ +.+...++.+.+.+++
T Consensus 22 ~g~~~lI~G~pGsGKT~-f~~qfl~~~~~-------~ge~vlyvs-~~e~~~~l~~~~~~~g 74 (260)
T COG0467 22 RGSVVLITGPPGTGKTI-FALQFLYEGAR-------EGEPVLYVS-TEESPEELLENARSFG 74 (260)
T ss_pred CCcEEEEEcCCCCcHHH-HHHHHHHHHHh-------cCCcEEEEE-ecCCHHHHHHHHHHcC
Confidence 46789999999999997 44444433322 366777765 4566677777776654
No 482
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=84.46 E-value=6.5 Score=44.60 Aligned_cols=17 Identities=41% Similarity=0.477 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCchHHHH
Q psy16633 55 NKDVLVRARTGSGKTGA 71 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a 71 (540)
++.+++.+|+|+|||..
T Consensus 212 ~~giLL~GppGtGKT~l 228 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLL 228 (733)
T ss_pred CceEEEECCCCCChHHH
Confidence 57899999999999963
No 483
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=84.45 E-value=4.8 Score=40.51 Aligned_cols=47 Identities=17% Similarity=0.359 Sum_probs=27.0
Q ss_pred CCccEEEEcCccccccC-CcHHHHHHHHHhC----C--cccceeeEeeeccHHH
Q psy16633 167 SSLEIVIIDEADLVFSF-GYEDDMKAVLKFL----P--KLYQAILASATLSEDV 213 (540)
Q Consensus 167 ~~l~~lViDEah~l~~~-~~~~~l~~i~~~l----~--~~~q~il~SATl~~~~ 213 (540)
.++++||||=+-++... ..-..+..+...+ + +..-++.++||...+.
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~ 248 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNA 248 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHH
Confidence 56788999988754322 2224455544332 2 2334688888876543
No 484
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=84.40 E-value=1.3 Score=42.36 Aligned_cols=35 Identities=17% Similarity=0.394 Sum_probs=24.3
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcC
Q psy16633 57 DVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSP 99 (540)
Q Consensus 57 d~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~P 99 (540)
.++|.|++|||||. +++-++..+- ..-..+++++|
T Consensus 15 r~viIG~sGSGKT~-li~~lL~~~~-------~~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTT-LIKSLLYYLR-------HKFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHH-HHHHHHHhhc-------ccCCEEEEEec
Confidence 68999999999997 5666665442 23355666666
No 485
>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.
Probab=84.36 E-value=3 Score=45.84 Aligned_cols=52 Identities=21% Similarity=0.267 Sum_probs=35.7
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHH--HHHHHHHHHHHH
Q psy16633 55 NKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKE--LCNQLHKNIQEL 114 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~--La~q~~~~l~~l 114 (540)
..+.+|.|+||+|||..+..-+.|.+ ..+..++++=|-.. +...++..++..
T Consensus 180 ~gHtlV~GtTGsGKT~l~~~li~q~i--------~~g~~vi~fDpkgD~el~~~~~~~~~~~ 233 (643)
T TIGR03754 180 VGHTLVLGTTRVGKTRLAELLITQDI--------RRGDVVIVFDPKGDADLLKRMYAEAKRA 233 (643)
T ss_pred cCceEEECCCCCCHHHHHHHHHHHHH--------HcCCeEEEEeCCCCHHHHHHHHHHHHHh
Confidence 45799999999999987666555555 24667888888774 444444444443
No 486
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=84.34 E-value=3.1 Score=44.88 Aligned_cols=39 Identities=26% Similarity=0.335 Sum_probs=26.5
Q ss_pred CCccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEe
Q psy16633 167 SSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206 (540)
Q Consensus 167 ~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~S 206 (540)
...+++||||||.|.... ...+...++.-|+.+.+|+.+
T Consensus 116 ~~~KVvIIDEad~Lt~~A-~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKEA-FNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred CCeEEEEEECcccCCHHH-HHHHHHHHhhcCCceEEEEEE
Confidence 678899999999775433 334555555556666666655
No 487
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.26 E-value=7.3 Score=43.04 Aligned_cols=39 Identities=26% Similarity=0.266 Sum_probs=24.5
Q ss_pred CCccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEe
Q psy16633 167 SSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206 (540)
Q Consensus 167 ~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~S 206 (540)
...+++||||+|.|.... ...+...++..|...-+|+.+
T Consensus 120 ~~~KVvIIdea~~Ls~~a-~naLLK~LEepp~~tifIL~t 158 (614)
T PRK14971 120 GKYKIYIIDEVHMLSQAA-FNAFLKTLEEPPSYAIFILAT 158 (614)
T ss_pred CCcEEEEEECcccCCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 678999999999885432 334555555555554444433
No 488
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=84.15 E-value=4.8 Score=44.39 Aligned_cols=61 Identities=18% Similarity=0.201 Sum_probs=55.7
Q ss_pred cCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCC
Q psy16633 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE 325 (540)
Q Consensus 265 ~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~ 325 (540)
..+.++|.+|++.-+......|+..|+.+..+||+++..++..++.....|.++++++|++
T Consensus 52 ~~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe 112 (591)
T TIGR01389 52 LKGLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPE 112 (591)
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChh
Confidence 3568999999999888888889999999999999999999999999999999999999985
No 489
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=83.96 E-value=4.8 Score=38.58 Aligned_cols=32 Identities=22% Similarity=0.229 Sum_probs=26.8
Q ss_pred CccEEEEcCccccccCCcHHHHHHHHHhCCcc
Q psy16633 168 SLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199 (540)
Q Consensus 168 ~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~ 199 (540)
+-+++|+||.=..+|..-...+..++..++..
T Consensus 156 ~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~ 187 (235)
T COG1122 156 GPEILLLDEPTAGLDPKGRRELLELLKKLKEE 187 (235)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 46789999999999988788888888887755
No 490
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=83.72 E-value=2.6 Score=47.14 Aligned_cols=71 Identities=20% Similarity=0.207 Sum_probs=53.7
Q ss_pred CChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHh
Q psy16633 40 EPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTM 116 (540)
Q Consensus 40 ~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~ 116 (540)
.+++-|.+|+... ...++|.|..|||||.+..--+...+.. . ......++.++=|+..|.++.+.+..+..
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vlt~Ria~li~~-~---~v~p~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRVLTERIAYLIAA-G---GVDPEQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhhHHHHHHHHHHc-C---CcChHHeeeeechHHHHHHHHHHHHHHhC
Confidence 5788999999765 5679999999999998765555444432 1 23455688888899999999888888764
No 491
>PHA02244 ATPase-like protein
Probab=83.67 E-value=0.8 Score=46.64 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=18.4
Q ss_pred HHHHhcCCcEEEEcCCCchHHHH
Q psy16633 49 IPLILQNKDVLVRARTGSGKTGA 71 (540)
Q Consensus 49 i~~il~gkd~li~a~TGsGKT~a 71 (540)
...+..+.++++.+|||+|||..
T Consensus 113 ~r~l~~~~PVLL~GppGtGKTtL 135 (383)
T PHA02244 113 AKIVNANIPVFLKGGAGSGKNHI 135 (383)
T ss_pred HHHHhcCCCEEEECCCCCCHHHH
Confidence 34445678999999999999963
No 492
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=83.58 E-value=3.7 Score=37.15 Aligned_cols=28 Identities=29% Similarity=0.510 Sum_probs=17.4
Q ss_pred CCccEEEEcCccccc--cCCcHHHHHHHHH
Q psy16633 167 SSLEIVIIDEADLVF--SFGYEDDMKAVLK 194 (540)
Q Consensus 167 ~~l~~lViDEah~l~--~~~~~~~l~~i~~ 194 (540)
..-+++||||+=.|- +.+|...+..++.
T Consensus 94 ~~~~liviDEIG~mEl~~~~F~~~v~~~l~ 123 (168)
T PF03266_consen 94 SSSDLIVIDEIGKMELKSPGFREAVEKLLD 123 (168)
T ss_dssp HCCHEEEE---STTCCC-CHHHHHHHHHHC
T ss_pred CCCCEEEEeccchhhhcCHHHHHHHHHHHc
Confidence 366899999998654 4457777777776
No 493
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=83.56 E-value=0.83 Score=47.06 Aligned_cols=18 Identities=28% Similarity=0.267 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCchHHHH
Q psy16633 54 QNKDVLVRARTGSGKTGA 71 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~a 71 (540)
.|+.++|.||+|+|||..
T Consensus 167 ~Gq~~~IvG~~g~GKTtL 184 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVL 184 (415)
T ss_pred CCCEEEEECCCCCChhHH
Confidence 578899999999999973
No 494
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=82.98 E-value=3.9 Score=48.62 Aligned_cols=59 Identities=17% Similarity=0.294 Sum_probs=50.3
Q ss_pred CCcEEEEecChhhHHHHHHHHHhC----CCce---EEeCCCCCHHHHHHHHHHHhcCCccEEEeCC
Q psy16633 266 QGKTIIFVNTVDKCYKLKLYLEQF----KIST---CVLNSELPAKARCHAVYQFNQGLYDVIIASD 324 (540)
Q Consensus 266 ~~k~IIF~~s~~~~~~l~~~L~~~----~~~~---~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~ 324 (540)
+.+++|.+||+.-|..++..+.++ ++.+ ..+||+++..++...++.+.+|..+|+|+|+
T Consensus 121 g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp 186 (1171)
T TIGR01054 121 GKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTT 186 (1171)
T ss_pred CCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 568999999999999888877654 4443 3589999999999999999999999999998
No 495
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=82.90 E-value=3.4 Score=36.83 Aligned_cols=26 Identities=23% Similarity=0.531 Sum_probs=19.1
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHh
Q psy16633 56 KDVLVRARTGSGKTGAFAIPMIQKIIN 82 (540)
Q Consensus 56 kd~li~a~TGsGKT~a~~ipil~~l~~ 82 (540)
..++|.+++|+|||. ++.-+...+..
T Consensus 6 mki~ITG~PGvGKtT-l~~ki~e~L~~ 31 (179)
T COG1618 6 MKIFITGRPGVGKTT-LVLKIAEKLRE 31 (179)
T ss_pred eEEEEeCCCCccHHH-HHHHHHHHHHh
Confidence 358999999999997 45555555533
No 496
>PHA02542 41 41 helicase; Provisional
Probab=82.86 E-value=3.8 Score=43.64 Aligned_cols=34 Identities=18% Similarity=0.097 Sum_probs=22.4
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEc
Q psy16633 57 DVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLS 98 (540)
Q Consensus 57 d~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~ 98 (540)
-+++.|++|.|||. +.+-+...+.. .+..|+++.
T Consensus 192 LiiIaarPgmGKTt-falniA~~~a~-------~g~~Vl~fS 225 (473)
T PHA02542 192 LNVLLAGVNVGKSL-GLCSLAADYLQ-------QGYNVLYIS 225 (473)
T ss_pred EEEEEcCCCccHHH-HHHHHHHHHHh-------cCCcEEEEe
Confidence 47899999999997 44444444322 356677664
No 497
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=82.75 E-value=10 Score=37.45 Aligned_cols=42 Identities=33% Similarity=0.196 Sum_probs=29.2
Q ss_pred CCccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEeeec
Q psy16633 167 SSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209 (540)
Q Consensus 167 ~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~SATl 209 (540)
...+++|||+||.|... -...+.++++.-|.+.-++++|...
T Consensus 94 ~~~kv~ii~~ad~mt~~-AaNaLLK~LEEPp~~~~fiL~~~~~ 135 (290)
T PRK05917 94 SPYKIYIIHEADRMTLD-AISAFLKVLEDPPQHGVIILTSAKP 135 (290)
T ss_pred CCceEEEEechhhcCHH-HHHHHHHHhhcCCCCeEEEEEeCCh
Confidence 67899999999988653 3455666666656666666666553
No 498
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=82.67 E-value=4.7 Score=35.32 Aligned_cols=39 Identities=13% Similarity=0.293 Sum_probs=26.3
Q ss_pred CCccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEeee
Q psy16633 167 SSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208 (540)
Q Consensus 167 ~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~SAT 208 (540)
.+-+++++||.-.-+|......+..++..+. ..++++.-
T Consensus 87 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~---~til~~th 125 (144)
T cd03221 87 ENPNLLLLDEPTNHLDLESIEALEEALKEYP---GTVILVSH 125 (144)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHcC---CEEEEEEC
Confidence 5667899999987777766666666666552 34445443
No 499
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=82.62 E-value=3.4 Score=49.39 Aligned_cols=101 Identities=18% Similarity=0.195 Sum_probs=62.3
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcC-CCc-e----EEEee
Q psy16633 55 NKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCS-RDV-K----CVDIS 128 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~-~~i-~----~~~~~ 128 (540)
.++++|.|+.|||||.+.+--++..++. ......+++++-|+.-|.++.+.+........ ..- . ...+.
T Consensus 10 ~~~~~~~a~agsgkt~~l~~~~~~~~~~-----~~~~~~i~~~t~t~~aa~em~~Ri~~~L~~~~~~~~~~l~~~l~~~~ 84 (1141)
T TIGR02784 10 KTSAWVSANAGSGKTHVLTQRVIRLLLN-----GVPPSKILCLTYTKAAAAEMQNRVFDRLGEWAVLDDAELRARLEALE 84 (1141)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHc-----CCCCCeEEEEecCHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhc
Confidence 4689999999999998766666655543 13457899999999999998887776553321 000 0 00000
Q ss_pred cCc----cc----ccchhhhhCCCCEEEEChHHHHHHHhc
Q psy16633 129 EQV----DV----SVQEPLLVERPDIVVATPARALAHLKA 160 (540)
Q Consensus 129 ~~~----~~----~~~~~~l~~~~~Ivv~Tp~~l~~~l~~ 160 (540)
|.. .. ......+.....+-|.|...+...+-+
T Consensus 85 ~~~~~~~~l~~ar~l~~~~l~~~~~l~I~Ti~sf~~~l~r 124 (1141)
T TIGR02784 85 GKRPDAAKLAEARRLFARALETPGGLKIQTIHAFCESLLH 124 (1141)
T ss_pred CCCCChHHHHHHHHHHHHHHhCCCCceEeeHHHHHHHHHH
Confidence 000 00 011233444566889999988776644
No 500
>PRK07413 hypothetical protein; Validated
Probab=82.59 E-value=14 Score=37.85 Aligned_cols=53 Identities=23% Similarity=0.419 Sum_probs=43.7
Q ss_pred CCccEEEEcCccccccCCcH--HHHHHHHHhCCcccceeeEeeeccHHHHHHHHH
Q psy16633 167 SSLEIVIIDEADLVFSFGYE--DDMKAVLKFLPKLYQAILASATLSEDVLSLKHL 219 (540)
Q Consensus 167 ~~l~~lViDEah~l~~~~~~--~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~~ 219 (540)
..+++||+||+-..++.|+- +++..+++..|...-+|+.--..|+.+..++..
T Consensus 124 g~ydlvILDEi~~Al~~gll~~eevl~~L~~rP~~~evVLTGR~ap~~Lie~ADl 178 (382)
T PRK07413 124 GLYSVVVLDELNPVLDLGLLPVDEVVNTLKSRPEGLEIIITGRAAPQSLLDIADL 178 (382)
T ss_pred CCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEeCCCCCHHHHHhCCe
Confidence 57899999999998888854 677778888888888888888888888776654
Done!