Query psy16633
Match_columns 540
No_of_seqs 363 out of 3084
Neff 8.9
Searched_HMMs 29240
Date Fri Aug 16 17:53:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16633.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16633hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 5.3E-62 1.8E-66 512.6 44.6 375 4-428 46-423 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 2.3E-58 7.8E-63 482.5 41.3 377 4-428 5-398 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 3.6E-57 1.2E-61 472.6 34.9 357 22-428 41-398 (410)
4 1s2m_A Putative ATP-dependent 100.0 2.8E-55 9.7E-60 456.6 38.5 356 22-428 25-380 (400)
5 3eiq_A Eukaryotic initiation f 100.0 1.4E-55 4.8E-60 460.7 33.5 357 22-428 44-402 (414)
6 1xti_A Probable ATP-dependent 100.0 9E-55 3.1E-59 451.1 38.5 345 22-397 12-358 (391)
7 3fht_A ATP-dependent RNA helic 100.0 2.1E-54 7.3E-59 451.3 37.7 355 22-428 29-395 (412)
8 1hv8_A Putative ATP-dependent 100.0 8.7E-54 3E-58 439.3 39.1 350 22-428 10-360 (367)
9 3sqw_A ATP-dependent RNA helic 100.0 3E-54 1E-58 470.0 37.0 354 23-400 26-402 (579)
10 3pey_A ATP-dependent RNA helic 100.0 6.7E-54 2.3E-58 444.6 37.6 339 22-397 9-357 (395)
11 3i5x_A ATP-dependent RNA helic 100.0 9.5E-54 3.2E-58 465.1 37.3 353 24-400 78-453 (563)
12 3fmp_B ATP-dependent RNA helic 100.0 1.9E-55 6.4E-60 469.1 21.3 344 22-400 96-451 (479)
13 1fuu_A Yeast initiation factor 100.0 9.3E-55 3.2E-59 451.3 20.5 345 22-400 25-370 (394)
14 2z0m_A 337AA long hypothetical 100.0 1.9E-51 6.6E-56 417.1 34.3 326 25-400 1-326 (337)
15 2v1x_A ATP-dependent DNA helic 100.0 1.1E-50 3.8E-55 439.4 30.8 333 22-400 25-378 (591)
16 3fho_A ATP-dependent RNA helic 100.0 4.4E-51 1.5E-55 437.6 20.5 352 23-428 124-486 (508)
17 1oyw_A RECQ helicase, ATP-depe 100.0 6.8E-49 2.3E-53 421.0 31.7 330 22-400 6-347 (523)
18 3oiy_A Reverse gyrase helicase 100.0 2.9E-49 1E-53 413.5 25.1 326 28-426 9-376 (414)
19 3l9o_A ATP-dependent RNA helic 100.0 1.4E-47 4.9E-52 439.9 23.2 326 23-396 167-597 (1108)
20 2va8_A SSO2462, SKI2-type heli 100.0 1.2E-44 4.2E-49 403.8 34.9 331 19-397 8-409 (715)
21 2ykg_A Probable ATP-dependent 100.0 1E-45 3.5E-50 411.9 25.1 338 30-398 3-518 (696)
22 2zj8_A DNA helicase, putative 100.0 1.5E-45 5.2E-50 411.2 26.4 329 22-397 5-388 (720)
23 4ddu_A Reverse gyrase; topoiso 100.0 2.4E-45 8.1E-50 421.4 27.7 280 35-368 74-388 (1104)
24 4a2p_A RIG-I, retinoic acid in 100.0 1.1E-44 3.6E-49 392.8 29.5 331 37-398 4-510 (556)
25 1tf5_A Preprotein translocase 100.0 5.1E-45 1.8E-49 395.9 26.3 333 25-398 61-547 (844)
26 3tbk_A RIG-I helicase domain; 100.0 6.3E-44 2.2E-48 386.4 34.1 331 40-400 4-511 (555)
27 2p6r_A Afuhel308 helicase; pro 100.0 2.2E-45 7.4E-50 408.8 22.8 329 22-398 5-390 (702)
28 2xgj_A ATP-dependent RNA helic 100.0 8.5E-44 2.9E-48 405.3 34.9 315 33-396 80-499 (1010)
29 1gku_B Reverse gyrase, TOP-RG; 100.0 1.3E-44 4.5E-49 415.4 20.2 314 31-400 48-458 (1054)
30 4a2q_A RIG-I, retinoic acid in 100.0 3E-43 1E-47 396.5 30.6 334 35-398 243-751 (797)
31 2fsf_A Preprotein translocase 100.0 3.6E-43 1.2E-47 380.3 21.0 321 36-398 71-585 (853)
32 4a2w_A RIG-I, retinoic acid in 100.0 5E-42 1.7E-46 390.9 28.6 338 31-398 239-751 (936)
33 4a4z_A Antiviral helicase SKI2 100.0 9.5E-42 3.3E-46 388.5 30.9 310 35-393 35-489 (997)
34 1wp9_A ATP-dependent RNA helic 100.0 1.4E-41 4.9E-46 360.8 30.2 323 40-398 9-477 (494)
35 1nkt_A Preprotein translocase 100.0 2.9E-41 9.9E-46 365.7 26.4 323 35-398 107-619 (922)
36 4gl2_A Interferon-induced heli 100.0 1.4E-42 4.9E-47 386.7 15.5 325 40-397 7-519 (699)
37 2eyq_A TRCF, transcription-rep 100.0 2.7E-40 9.1E-45 381.9 32.2 325 21-396 584-922 (1151)
38 1gm5_A RECG; helicase, replica 100.0 1.2E-41 4.1E-46 376.4 20.1 319 27-395 356-696 (780)
39 4f92_B U5 small nuclear ribonu 100.0 1.1E-40 3.8E-45 395.3 28.5 341 24-400 910-1312(1724)
40 2whx_A Serine protease/ntpase/ 100.0 1.8E-42 6.1E-47 376.3 8.9 306 23-400 155-485 (618)
41 4f92_B U5 small nuclear ribonu 100.0 4.6E-40 1.6E-44 390.1 26.7 331 37-399 76-476 (1724)
42 2jlq_A Serine protease subunit 100.0 3.4E-41 1.1E-45 355.4 13.4 288 37-396 1-311 (451)
43 2oca_A DAR protein, ATP-depend 100.0 8.8E-40 3E-44 350.9 20.9 311 40-394 113-453 (510)
44 2xau_A PRE-mRNA-splicing facto 100.0 8.5E-39 2.9E-43 355.7 24.7 341 22-410 76-458 (773)
45 2wv9_A Flavivirin protease NS2 100.0 5.2E-40 1.8E-44 359.1 10.4 298 32-400 202-540 (673)
46 1yks_A Genome polyprotein [con 100.0 2.6E-40 8.8E-45 347.2 7.0 269 52-400 5-306 (440)
47 3fe2_A Probable ATP-dependent 100.0 1.1E-37 3.8E-42 301.6 23.8 222 4-232 19-240 (242)
48 3o8b_A HCV NS3 protease/helica 100.0 2.1E-39 7.1E-44 349.3 11.7 277 42-400 219-518 (666)
49 2fwr_A DNA repair protein RAD2 100.0 1.3E-38 4.3E-43 338.6 17.5 288 40-391 93-447 (472)
50 2z83_A Helicase/nucleoside tri 100.0 1.1E-38 3.9E-43 336.7 10.1 273 49-396 15-313 (459)
51 2v6i_A RNA helicase; membrane, 100.0 8.5E-37 2.9E-41 319.8 19.2 270 54-394 1-289 (431)
52 3iuy_A Probable ATP-dependent 100.0 7.6E-36 2.6E-40 286.0 21.3 213 9-228 14-227 (228)
53 3fmo_B ATP-dependent RNA helic 100.0 2.1E-35 7.2E-40 294.3 22.7 200 22-231 96-299 (300)
54 1q0u_A Bstdead; DEAD protein, 100.0 3.7E-35 1.3E-39 279.4 21.3 204 22-231 8-213 (219)
55 3ber_A Probable ATP-dependent 100.0 1.1E-34 3.7E-39 281.7 24.7 201 22-230 47-248 (249)
56 3h1t_A Type I site-specific re 100.0 8.8E-36 3E-40 325.3 18.2 304 40-385 178-545 (590)
57 3bor_A Human initiation factor 100.0 6.8E-35 2.3E-39 281.1 21.0 201 22-230 34-235 (237)
58 2pl3_A Probable ATP-dependent 100.0 2.1E-34 7.3E-39 277.4 24.4 214 9-231 20-234 (236)
59 3ly5_A ATP-dependent RNA helic 100.0 7.5E-35 2.6E-39 285.0 21.2 208 14-225 47-258 (262)
60 1wrb_A DJVLGB; RNA helicase, D 100.0 6.3E-35 2.1E-39 284.2 20.6 215 12-233 21-243 (253)
61 1vec_A ATP-dependent RNA helic 100.0 1.6E-34 5.5E-39 272.1 22.5 199 22-227 7-205 (206)
62 3rc3_A ATP-dependent RNA helic 100.0 1.5E-34 5.1E-39 315.1 25.1 294 26-394 130-443 (677)
63 2oxc_A Probable ATP-dependent 100.0 1.3E-34 4.3E-39 277.9 21.4 210 9-230 19-229 (230)
64 3dkp_A Probable ATP-dependent 100.0 1.1E-34 3.9E-39 280.9 19.6 223 3-232 14-243 (245)
65 1qde_A EIF4A, translation init 100.0 2.7E-34 9.2E-39 274.3 21.4 210 10-232 10-219 (224)
66 2gxq_A Heat resistant RNA depe 100.0 4.1E-34 1.4E-38 269.5 21.4 202 22-230 5-206 (207)
67 1t6n_A Probable ATP-dependent 100.0 4.1E-34 1.4E-38 272.3 19.3 216 6-228 1-219 (220)
68 3dmq_A RNA polymerase-associat 100.0 1.5E-33 5.3E-38 321.5 24.9 320 40-395 153-612 (968)
69 3jux_A Protein translocase sub 100.0 1.4E-31 4.9E-36 284.1 29.3 321 36-398 72-589 (822)
70 1z63_A Helicase of the SNF2/RA 100.0 6.9E-31 2.4E-35 281.0 29.7 306 40-391 37-446 (500)
71 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 3.7E-31 1.3E-35 299.9 19.7 327 27-395 251-708 (1038)
72 3mwy_W Chromo domain-containin 100.0 8E-28 2.7E-32 270.3 27.8 313 40-391 236-677 (800)
73 1z3i_X Similar to RAD54-like; 100.0 7.6E-27 2.6E-31 256.1 32.7 318 40-391 55-521 (644)
74 1c4o_A DNA nucleotide excision 100.0 1.8E-27 6.2E-32 260.9 23.5 170 199-400 380-554 (664)
75 2ipc_A Preprotein translocase 100.0 3.3E-26 1.1E-30 247.3 31.2 130 36-181 76-215 (997)
76 2d7d_A Uvrabc system protein B 99.9 8.9E-27 3E-31 255.4 23.3 170 199-400 386-560 (661)
77 2hjv_A ATP-dependent RNA helic 99.9 1.6E-26 5.4E-31 209.2 18.7 151 237-428 7-157 (163)
78 2p6n_A ATP-dependent RNA helic 99.9 8.5E-27 2.9E-31 216.3 16.0 168 218-428 9-177 (191)
79 1fuk_A Eukaryotic initiation f 99.9 3.9E-26 1.3E-30 207.0 17.9 149 239-428 3-152 (165)
80 2jgn_A DBX, DDX3, ATP-dependen 99.9 4.3E-26 1.5E-30 210.6 17.0 153 236-428 16-168 (185)
81 2rb4_A ATP-dependent RNA helic 99.9 5.3E-26 1.8E-30 208.2 17.2 151 237-428 5-162 (175)
82 1t5i_A C_terminal domain of A 99.9 3.1E-26 1.1E-30 209.0 15.4 150 238-428 4-154 (172)
83 3eaq_A Heat resistant RNA depe 99.9 3E-25 1E-29 209.6 16.6 148 240-428 6-153 (212)
84 3i32_A Heat resistant RNA depe 99.9 7.3E-25 2.5E-29 216.9 17.0 137 240-400 3-139 (300)
85 2yjt_D ATP-dependent RNA helic 99.8 6.5E-26 2.2E-30 206.6 0.0 138 239-400 3-141 (170)
86 3b6e_A Interferon-induced heli 99.9 1.5E-23 5.2E-28 198.1 15.5 166 37-208 30-216 (216)
87 3llm_A ATP-dependent RNA helic 99.9 9.3E-23 3.2E-27 195.8 11.6 170 40-225 61-232 (235)
88 2vl7_A XPD; helicase, unknown 99.9 1.3E-21 4.3E-26 210.3 21.1 128 36-181 4-188 (540)
89 3crv_A XPD/RAD3 related DNA he 99.9 5.8E-20 2E-24 198.1 26.5 132 37-182 1-187 (551)
90 1rif_A DAR protein, DNA helica 99.9 1.8E-21 6E-26 192.2 12.2 155 40-214 113-267 (282)
91 2fz4_A DNA repair protein RAD2 99.8 1.6E-18 5.6E-23 166.2 16.5 137 40-211 93-230 (237)
92 4a15_A XPD helicase, ATP-depen 99.7 4.4E-17 1.5E-21 177.1 21.8 81 40-129 3-87 (620)
93 1z5z_A Helicase of the SNF2/RA 99.7 4.1E-17 1.4E-21 159.2 14.3 126 247-395 92-223 (271)
94 1w36_D RECD, exodeoxyribonucle 98.9 3.6E-09 1.2E-13 114.8 11.9 145 42-207 151-297 (608)
95 4b3f_X DNA-binding protein smu 98.1 3.6E-06 1.2E-10 92.1 8.9 67 40-114 189-256 (646)
96 2gk6_A Regulator of nonsense t 98.1 2.2E-05 7.7E-10 85.3 13.1 69 39-114 179-247 (624)
97 3upu_A ATP-dependent DNA helic 98.0 2.6E-05 8.9E-10 81.6 11.9 71 34-111 19-94 (459)
98 3e1s_A Exodeoxyribonuclease V, 98.0 2.7E-05 9.4E-10 83.5 12.1 124 40-205 189-312 (574)
99 2xzl_A ATP-dependent helicase 98.0 4.8E-05 1.7E-09 84.7 13.7 69 39-114 359-427 (802)
100 2wjy_A Regulator of nonsense t 97.9 7.7E-05 2.6E-09 83.0 14.1 69 39-114 355-423 (800)
101 3lfu_A DNA helicase II; SF1 he 97.9 0.001 3.5E-08 72.5 22.0 72 39-116 8-79 (647)
102 2o0j_A Terminase, DNA packagin 97.5 0.0016 5.4E-08 65.9 14.8 74 40-119 163-236 (385)
103 3cpe_A Terminase, DNA packagin 97.2 0.0062 2.1E-07 65.6 16.4 147 40-210 163-314 (592)
104 3vkw_A Replicase large subunit 96.6 0.0047 1.6E-07 63.2 8.6 104 57-205 163-266 (446)
105 3hgt_A HDA1 complex subunit 3; 96.5 0.014 4.9E-07 57.0 11.1 121 249-397 107-238 (328)
106 2kjq_A DNAA-related protein; s 96.4 0.0022 7.6E-08 55.7 4.1 17 54-70 35-51 (149)
107 3ec2_A DNA replication protein 96.4 0.0086 2.9E-07 53.5 8.1 30 42-71 16-54 (180)
108 1uaa_A REP helicase, protein ( 96.4 0.007 2.4E-07 66.3 8.8 71 40-116 2-72 (673)
109 3te6_A Regulatory protein SIR3 96.3 0.029 9.8E-07 55.1 11.9 26 55-81 45-70 (318)
110 1pjr_A PCRA; DNA repair, DNA r 96.2 0.01 3.6E-07 65.4 9.2 72 39-116 10-81 (724)
111 2orw_A Thymidine kinase; TMTK, 96.1 0.029 9.8E-07 50.5 9.9 40 54-101 2-41 (184)
112 2b8t_A Thymidine kinase; deoxy 96.1 0.0032 1.1E-07 58.7 3.5 91 54-180 11-101 (223)
113 2p65_A Hypothetical protein PF 95.8 0.068 2.3E-06 47.2 11.1 17 55-71 43-59 (187)
114 1xx6_A Thymidine kinase; NESG, 95.8 0.023 8E-07 51.4 7.7 39 55-101 8-46 (191)
115 1d2n_A N-ethylmaleimide-sensit 95.5 0.062 2.1E-06 51.4 10.4 17 56-72 65-81 (272)
116 3u4q_A ATP-dependent helicase/ 95.5 0.018 6.2E-07 67.4 7.6 72 40-115 10-81 (1232)
117 1l8q_A Chromosomal replication 95.4 0.043 1.5E-06 54.0 8.7 17 55-71 37-53 (324)
118 2j9r_A Thymidine kinase; TK1, 95.1 0.027 9.2E-07 51.7 5.9 40 55-102 28-67 (214)
119 1jbk_A CLPB protein; beta barr 95.1 0.66 2.2E-05 40.7 15.2 16 56-71 44-59 (195)
120 1gm5_A RECG; helicase, replica 94.9 0.086 2.9E-06 58.3 10.2 77 265-363 416-496 (780)
121 2orv_A Thymidine kinase; TP4A 94.9 0.051 1.7E-06 50.4 7.0 41 54-102 18-58 (234)
122 2v1u_A Cell division control p 94.9 0.095 3.3E-06 52.4 9.8 17 55-71 44-60 (387)
123 2qgz_A Helicase loader, putati 94.6 0.11 3.8E-06 50.7 9.1 26 55-81 152-177 (308)
124 3bos_A Putative DNA replicatio 94.5 0.053 1.8E-06 50.3 6.5 17 55-71 52-68 (242)
125 1w4r_A Thymidine kinase; type 94.4 0.051 1.7E-06 49.1 5.6 39 54-100 19-57 (195)
126 2zpa_A Uncharacterized protein 94.4 0.075 2.6E-06 57.2 7.8 113 40-210 175-289 (671)
127 1g5t_A COB(I)alamin adenosyltr 94.4 0.28 9.5E-06 44.3 10.4 141 56-218 29-172 (196)
128 3u61_B DNA polymerase accessor 94.4 0.068 2.3E-06 52.5 7.1 40 167-206 104-143 (324)
129 2z4s_A Chromosomal replication 94.3 0.12 4.2E-06 53.1 9.2 16 56-71 131-146 (440)
130 2w58_A DNAI, primosome compone 94.2 0.14 4.7E-06 46.3 8.4 16 56-71 55-70 (202)
131 2qby_B CDC6 homolog 3, cell di 94.2 0.09 3.1E-06 52.7 7.7 16 56-71 46-61 (384)
132 2chg_A Replication factor C sm 94.1 0.48 1.6E-05 42.8 12.1 40 167-207 101-140 (226)
133 1a5t_A Delta prime, HOLB; zinc 94.0 0.081 2.8E-06 52.3 6.8 38 42-80 4-48 (334)
134 2q6t_A DNAB replication FORK h 94.0 0.24 8.2E-06 51.0 10.5 115 55-183 200-325 (444)
135 3e2i_A Thymidine kinase; Zn-bi 93.9 0.036 1.2E-06 50.8 3.7 41 54-102 27-67 (219)
136 3kl4_A SRP54, signal recogniti 93.8 0.33 1.1E-05 49.6 11.0 48 167-214 178-228 (433)
137 3syl_A Protein CBBX; photosynt 93.7 0.082 2.8E-06 51.4 6.1 16 56-71 68-83 (309)
138 1fnn_A CDC6P, cell division co 93.7 0.14 4.6E-06 51.4 7.9 15 57-71 46-60 (389)
139 2r6a_A DNAB helicase, replicat 93.6 0.19 6.6E-06 51.9 9.0 38 55-99 203-240 (454)
140 1sxj_E Activator 1 40 kDa subu 92.5 0.23 7.9E-06 49.1 7.5 42 167-209 133-174 (354)
141 2dr3_A UPF0273 protein PH0284; 92.5 0.48 1.6E-05 43.9 9.3 50 54-112 22-71 (247)
142 3eie_A Vacuolar protein sortin 92.4 0.33 1.1E-05 47.6 8.3 16 56-71 52-67 (322)
143 3oiy_A Reverse gyrase helicase 92.4 0.44 1.5E-05 48.2 9.6 62 264-325 62-126 (414)
144 3h4m_A Proteasome-activating n 92.1 0.48 1.6E-05 45.2 9.0 18 54-71 50-67 (285)
145 3pfi_A Holliday junction ATP-d 92.0 0.52 1.8E-05 46.3 9.2 16 56-71 56-71 (338)
146 4a1f_A DNAB helicase, replicat 91.6 0.095 3.2E-06 51.8 3.3 48 55-111 46-93 (338)
147 3dm5_A SRP54, signal recogniti 91.6 1.1 3.7E-05 45.8 11.2 124 57-214 102-229 (443)
148 2qby_A CDC6 homolog 1, cell di 90.8 0.84 2.9E-05 45.3 9.5 17 55-71 45-61 (386)
149 2qp9_X Vacuolar protein sortin 90.7 0.58 2E-05 46.5 8.1 16 56-71 85-100 (355)
150 1jr3_A DNA polymerase III subu 90.7 1.5 5.1E-05 43.4 11.3 39 167-206 118-156 (373)
151 1sxj_D Activator 1 41 kDa subu 90.5 0.56 1.9E-05 46.2 7.8 39 167-206 132-170 (353)
152 4b4t_J 26S protease regulatory 90.5 0.54 1.9E-05 47.4 7.6 17 55-71 182-198 (405)
153 2w0m_A SSO2452; RECA, SSPF, un 90.5 0.78 2.7E-05 41.9 8.3 18 54-71 22-39 (235)
154 1iqp_A RFCS; clamp loader, ext 90.4 1.1 3.9E-05 43.2 9.9 39 167-206 109-147 (327)
155 1w5s_A Origin recognition comp 90.2 0.98 3.4E-05 45.4 9.5 16 56-71 51-68 (412)
156 3bh0_A DNAB-like replicative h 89.8 0.81 2.8E-05 44.6 8.2 50 55-113 68-117 (315)
157 2eyq_A TRCF, transcription-rep 89.8 1 3.5E-05 52.2 10.2 76 265-362 651-730 (1151)
158 2gno_A DNA polymerase III, gam 89.6 1.4 4.7E-05 42.8 9.6 39 167-206 81-119 (305)
159 1sxj_C Activator 1 40 kDa subu 89.5 1.4 4.7E-05 43.3 9.7 39 167-206 109-147 (340)
160 3bgw_A DNAB-like replicative h 89.2 0.58 2E-05 48.1 6.8 37 55-99 197-233 (444)
161 3hjh_A Transcription-repair-co 88.6 1.4 4.7E-05 45.7 9.2 51 54-115 13-63 (483)
162 4b4t_L 26S protease subunit RP 88.3 0.64 2.2E-05 47.5 6.4 16 56-71 216-231 (437)
163 1qvr_A CLPB protein; coiled co 88.3 1.2 4.3E-05 49.8 9.3 25 47-71 181-207 (854)
164 2ce7_A Cell division protein F 87.7 1.9 6.4E-05 44.6 9.5 16 56-71 50-65 (476)
165 3pvs_A Replication-associated 87.5 0.85 2.9E-05 46.9 6.8 15 57-71 52-66 (447)
166 4ddu_A Reverse gyrase; topoiso 87.5 1.3 4.3E-05 51.1 8.8 61 264-324 119-182 (1104)
167 3co5_A Putative two-component 87.4 0.41 1.4E-05 40.6 3.7 21 51-71 23-43 (143)
168 2fna_A Conserved hypothetical 87.4 19 0.00064 34.7 16.5 51 151-206 124-177 (357)
169 1oyw_A RECQ helicase, ATP-depe 87.4 2 6.7E-05 45.2 9.7 60 266-325 65-124 (523)
170 3n70_A Transport activator; si 87.3 0.47 1.6E-05 40.3 4.0 20 53-72 22-41 (145)
171 3hu3_A Transitional endoplasmi 87.1 1.1 3.7E-05 46.7 7.4 17 55-71 238-254 (489)
172 1t6n_A Probable ATP-dependent 87.1 2.2 7.6E-05 38.6 8.8 55 267-324 83-142 (220)
173 4b4t_K 26S protease regulatory 86.9 3.9 0.00013 41.5 11.2 17 55-71 206-222 (428)
174 1sxj_B Activator 1 37 kDa subu 86.8 1.5 5.3E-05 42.2 8.0 39 167-206 106-144 (323)
175 4b4t_I 26S protease regulatory 86.3 1.4 4.7E-05 44.8 7.3 17 55-71 216-232 (437)
176 2v1x_A ATP-dependent DNA helic 86.2 1.9 6.6E-05 46.0 8.9 61 265-325 83-145 (591)
177 3ber_A Probable ATP-dependent 85.6 3.9 0.00013 38.0 9.8 55 266-324 111-169 (249)
178 1r6b_X CLPA protein; AAA+, N-t 85.4 2.9 0.0001 46.0 10.2 17 55-71 207-223 (758)
179 1n0w_A DNA repair protein RAD5 85.2 0.98 3.3E-05 41.7 5.4 19 54-72 23-41 (243)
180 1e9r_A Conjugal transfer prote 84.4 1 3.4E-05 46.1 5.5 44 54-105 52-95 (437)
181 3pxi_A Negative regulator of g 84.0 3.4 0.00012 45.5 9.8 15 57-71 523-537 (758)
182 3cmu_A Protein RECA, recombina 83.6 1 3.6E-05 54.4 5.7 46 49-102 1415-1466(2050)
183 2ehv_A Hypothetical protein PH 83.3 1.8 6.2E-05 40.0 6.4 45 167-211 134-183 (251)
184 3m6a_A ATP-dependent protease 83.3 1.9 6.4E-05 45.6 7.1 17 55-71 108-124 (543)
185 2oap_1 GSPE-2, type II secreti 83.1 1.6 5.5E-05 45.6 6.4 39 30-70 236-275 (511)
186 2p6n_A ATP-dependent RNA helic 82.6 7.9 0.00027 34.3 10.1 71 91-174 54-128 (191)
187 1tue_A Replication protein E1; 82.5 2.3 7.9E-05 38.5 6.3 50 27-79 28-81 (212)
188 1p9r_A General secretion pathw 82.3 0.96 3.3E-05 46.0 4.2 35 33-70 146-182 (418)
189 2hjv_A ATP-dependent RNA helic 82.3 5.4 0.00018 34.2 8.7 74 90-176 34-111 (163)
190 1q57_A DNA primase/helicase; d 82.2 1.9 6.5E-05 45.0 6.6 50 54-111 241-290 (503)
191 1xti_A Probable ATP-dependent 80.3 5 0.00017 39.6 8.8 56 266-324 76-136 (391)
192 1ls1_A Signal recognition part 79.7 11 0.00038 36.0 10.7 17 55-71 98-114 (295)
193 3eaq_A Heat resistant RNA depe 79.3 6.9 0.00024 35.3 8.6 72 90-174 30-105 (212)
194 3cmw_A Protein RECA, recombina 79.1 3.1 0.00011 49.7 7.5 97 48-182 1418-1523(1706)
195 1fuk_A Eukaryotic initiation f 78.8 8.7 0.0003 32.9 8.8 73 90-175 29-105 (165)
196 2eyu_A Twitching motility prot 78.4 1.3 4.4E-05 41.9 3.4 19 52-70 22-40 (261)
197 2rb4_A ATP-dependent RNA helic 78.0 6.5 0.00022 34.2 7.8 72 90-174 33-108 (175)
198 3nwn_A Kinesin-like protein KI 77.6 1.5 5.3E-05 43.4 3.8 25 48-72 96-122 (359)
199 4ag6_A VIRB4 ATPase, type IV s 77.5 1.9 6.6E-05 43.3 4.6 42 54-103 34-75 (392)
200 3cf2_A TER ATPase, transitiona 77.2 4.6 0.00016 44.5 7.8 16 56-71 239-254 (806)
201 1bg2_A Kinesin; motor protein, 76.5 1.8 6.2E-05 42.3 3.9 25 48-72 69-95 (325)
202 3iuy_A Probable ATP-dependent 76.3 3.6 0.00012 37.4 5.8 56 265-324 93-151 (228)
203 2gza_A Type IV secretion syste 75.9 1.6 5.6E-05 43.4 3.5 19 52-70 172-190 (361)
204 1t5i_A C_terminal domain of A 75.3 9.1 0.00031 33.2 7.9 73 90-175 30-106 (172)
205 3dc4_A Kinesin-like protein NO 75.1 1.8 6.3E-05 42.6 3.6 25 48-72 86-112 (344)
206 1v8k_A Kinesin-like protein KI 75.0 2 6.7E-05 43.4 3.8 25 48-72 146-172 (410)
207 3nbx_X ATPase RAVA; AAA+ ATPas 75.0 3.7 0.00013 42.7 6.1 43 28-71 15-57 (500)
208 4etp_A Kinesin-like protein KA 75.0 2.2 7.5E-05 43.1 4.1 25 48-72 132-158 (403)
209 2zts_A Putative uncharacterize 74.9 2.6 8.9E-05 38.8 4.5 17 55-71 30-46 (251)
210 2vvg_A Kinesin-2; motor protei 74.7 2.2 7.4E-05 42.2 3.9 24 49-72 82-107 (350)
211 2bjv_A PSP operon transcriptio 74.6 2.3 7.8E-05 39.9 4.1 18 54-71 28-45 (265)
212 2y65_A Kinesin, kinesin heavy 74.4 2.2 7.5E-05 42.4 3.9 25 48-72 76-102 (365)
213 2h58_A Kinesin-like protein KI 74.4 2.2 7.6E-05 41.8 3.9 26 47-72 71-98 (330)
214 3jvv_A Twitching mobility prot 74.4 2.7 9.1E-05 41.7 4.6 17 54-70 122-138 (356)
215 1ofh_A ATP-dependent HSL prote 74.4 5.6 0.00019 37.9 6.9 17 55-71 50-66 (310)
216 4a14_A Kinesin, kinesin-like p 74.3 2.2 7.6E-05 42.1 3.9 25 48-72 75-101 (344)
217 2r44_A Uncharacterized protein 74.3 2 6.7E-05 41.9 3.6 26 46-71 37-62 (331)
218 3b6u_A Kinesin-like protein KI 74.3 2.1 7.3E-05 42.6 3.8 25 48-72 93-119 (372)
219 3lre_A Kinesin-like protein KI 74.2 2.2 7.5E-05 42.3 3.9 25 48-72 97-123 (355)
220 1u0j_A DNA replication protein 74.2 5.6 0.00019 37.5 6.5 45 26-72 72-121 (267)
221 2jgn_A DBX, DDX3, ATP-dependen 74.2 14 0.00049 32.4 9.0 72 90-174 45-120 (185)
222 3gbj_A KIF13B protein; kinesin 74.2 2.2 7.4E-05 42.3 3.8 25 48-72 84-110 (354)
223 2nr8_A Kinesin-like protein KI 74.1 2.2 7.4E-05 42.3 3.8 25 48-72 95-121 (358)
224 1t5c_A CENP-E protein, centrom 74.1 2.2 7.4E-05 42.2 3.8 25 48-72 69-95 (349)
225 1goj_A Kinesin, kinesin heavy 74.1 2.2 7.5E-05 42.3 3.8 24 49-72 73-98 (355)
226 2zfi_A Kinesin-like protein KI 73.8 2.3 7.9E-05 42.3 3.9 25 48-72 81-107 (366)
227 1kgd_A CASK, peripheral plasma 73.7 1.5 5.2E-05 38.6 2.4 18 53-70 3-20 (180)
228 2ewv_A Twitching motility prot 73.6 2.1 7E-05 42.8 3.5 18 53-70 134-151 (372)
229 1x88_A Kinesin-like protein KI 73.5 2.2 7.5E-05 42.4 3.7 25 48-72 80-106 (359)
230 3t0q_A AGR253WP; kinesin, alph 73.5 2 6.8E-05 42.5 3.4 25 48-72 77-103 (349)
231 3fe2_A Probable ATP-dependent 73.4 8.9 0.0003 35.2 7.8 55 266-324 102-160 (242)
232 2heh_A KIF2C protein; kinesin, 73.0 2.4 8.2E-05 42.4 3.8 25 48-72 126-152 (387)
233 2oxc_A Probable ATP-dependent 73.0 8.6 0.00029 35.0 7.5 54 266-324 92-150 (230)
234 1gku_B Reverse gyrase, TOP-RG; 72.8 5.8 0.0002 45.4 7.5 58 265-324 98-163 (1054)
235 3cf2_A TER ATPase, transitiona 72.5 4.2 0.00014 44.8 6.0 16 56-71 512-527 (806)
236 1f9v_A Kinesin-like protein KA 72.4 2 7E-05 42.4 3.1 25 48-72 76-102 (347)
237 3u06_A Protein claret segregat 72.2 2.6 9E-05 42.6 3.9 26 47-72 129-156 (412)
238 3cob_A Kinesin heavy chain-lik 72.2 2.2 7.5E-05 42.5 3.3 25 48-72 71-97 (369)
239 2wbe_C Bipolar kinesin KRP-130 72.1 2.4 8.1E-05 42.3 3.6 24 49-72 93-118 (373)
240 3bor_A Human initiation factor 72.0 8 0.00027 35.4 7.1 57 265-324 97-157 (237)
241 3exa_A TRNA delta(2)-isopenten 71.0 1.7 5.9E-05 42.2 2.2 16 56-71 4-19 (322)
242 3a8t_A Adenylate isopentenyltr 71.0 1.7 5.8E-05 42.7 2.1 17 55-71 40-56 (339)
243 1rj9_A FTSY, signal recognitio 71.0 4.2 0.00014 39.3 4.9 26 55-82 102-127 (304)
244 2owm_A Nckin3-434, related to 70.6 3 0.0001 42.6 3.9 24 49-72 129-154 (443)
245 3i5x_A ATP-dependent RNA helic 70.0 34 0.0012 35.6 12.3 78 89-176 337-418 (563)
246 2qmh_A HPR kinase/phosphorylas 70.0 1.7 5.7E-05 39.3 1.7 17 55-71 34-50 (205)
247 3bfn_A Kinesin-like protein KI 69.9 2.5 8.5E-05 42.3 3.1 23 50-72 92-116 (388)
248 1qde_A EIF4A, translation init 69.8 6.1 0.00021 35.7 5.6 55 265-324 81-139 (224)
249 3vaa_A Shikimate kinase, SK; s 69.6 2.2 7.5E-05 38.1 2.5 18 54-71 24-41 (199)
250 2pl3_A Probable ATP-dependent 69.5 8.2 0.00028 35.2 6.5 55 265-324 96-154 (236)
251 3foz_A TRNA delta(2)-isopenten 69.4 2.1 7.1E-05 41.5 2.4 15 57-71 12-26 (316)
252 3tau_A Guanylate kinase, GMP k 69.4 2.2 7.6E-05 38.5 2.5 18 54-71 7-24 (208)
253 1w36_B RECB, exodeoxyribonucle 69.4 6.4 0.00022 45.7 6.9 60 57-116 18-81 (1180)
254 3hws_A ATP-dependent CLP prote 69.2 3.6 0.00012 40.7 4.2 18 54-71 50-67 (363)
255 2pt7_A CAG-ALFA; ATPase, prote 69.0 2.2 7.6E-05 41.8 2.5 18 53-70 169-186 (330)
256 2rep_A Kinesin-like protein KI 68.2 3 0.0001 41.6 3.3 25 48-72 107-133 (376)
257 3trf_A Shikimate kinase, SK; a 68.1 2.4 8.2E-05 37.2 2.4 18 55-72 5-22 (185)
258 3lda_A DNA repair protein RAD5 67.9 12 0.00042 37.5 7.9 18 55-72 178-195 (400)
259 1ojl_A Transcriptional regulat 67.7 3.5 0.00012 39.7 3.7 18 54-71 24-41 (304)
260 1cr0_A DNA primase/helicase; R 67.7 4.6 0.00016 38.6 4.5 18 54-71 34-51 (296)
261 3cf0_A Transitional endoplasmi 67.2 2.4 8.2E-05 40.8 2.3 18 54-71 48-65 (301)
262 1lvg_A Guanylate kinase, GMP k 66.9 2.7 9.2E-05 37.7 2.5 17 54-70 3-19 (198)
263 4akg_A Glutathione S-transfera 66.8 10 0.00034 47.6 8.1 47 26-73 891-941 (2695)
264 1vec_A ATP-dependent RNA helic 66.7 15 0.00052 32.4 7.6 55 266-324 71-130 (206)
265 1qhx_A CPT, protein (chloramph 66.6 2.7 9.2E-05 36.5 2.4 17 55-71 3-19 (178)
266 3b9p_A CG5977-PA, isoform A; A 66.5 2.5 8.5E-05 40.4 2.3 17 55-71 54-70 (297)
267 3b9q_A Chloroplast SRP recepto 66.5 4.3 0.00015 39.2 4.0 25 56-82 101-125 (302)
268 3i32_A Heat resistant RNA depe 66.3 13 0.00045 35.6 7.5 72 90-174 27-102 (300)
269 2ius_A DNA translocase FTSK; n 66.3 7 0.00024 40.7 5.7 26 55-81 167-192 (512)
270 2ffh_A Protein (FFH); SRP54, s 66.3 67 0.0023 32.3 13.0 15 57-71 100-114 (425)
271 2j41_A Guanylate kinase; GMP, 66.2 2.6 9E-05 37.6 2.3 19 53-71 4-22 (207)
272 2qz4_A Paraplegin; AAA+, SPG7, 66.1 2.7 9.3E-05 39.1 2.4 17 55-71 39-55 (262)
273 3ney_A 55 kDa erythrocyte memb 65.9 2.8 9.7E-05 37.7 2.4 18 53-70 17-34 (197)
274 3sqw_A ATP-dependent RNA helic 65.8 46 0.0016 34.9 12.3 79 89-177 286-368 (579)
275 2ze6_A Isopentenyl transferase 65.6 2.6 9E-05 39.4 2.2 15 57-71 3-17 (253)
276 3lw7_A Adenylate kinase relate 65.6 2.7 9.3E-05 36.1 2.2 15 57-71 3-17 (179)
277 3b85_A Phosphate starvation-in 65.4 5.5 0.00019 36.0 4.3 37 42-80 9-45 (208)
278 3tr0_A Guanylate kinase, GMP k 64.7 3.2 0.00011 37.0 2.5 18 54-71 6-23 (205)
279 1wp9_A ATP-dependent RNA helic 64.4 16 0.00056 36.7 8.3 55 265-324 51-109 (494)
280 3uk6_A RUVB-like 2; hexameric 64.3 2.8 9.5E-05 41.4 2.2 16 56-71 71-86 (368)
281 1xp8_A RECA protein, recombina 64.3 6.5 0.00022 39.1 4.9 45 48-100 61-111 (366)
282 3hr8_A Protein RECA; alpha and 64.1 4.8 0.00016 39.8 3.8 47 48-102 48-100 (356)
283 3iij_A Coilin-interacting nucl 64.0 3.6 0.00012 35.9 2.7 18 54-71 10-27 (180)
284 1lv7_A FTSH; alpha/beta domain 63.7 3 0.0001 38.9 2.2 16 56-71 46-61 (257)
285 1njg_A DNA polymerase III subu 63.4 5.3 0.00018 36.0 3.9 15 57-71 47-61 (250)
286 1y63_A LMAJ004144AAA protein; 63.3 3.4 0.00012 36.3 2.4 18 54-71 9-26 (184)
287 2qor_A Guanylate kinase; phosp 63.3 3.7 0.00013 36.8 2.7 19 53-71 10-28 (204)
288 3ly5_A ATP-dependent RNA helic 63.3 19 0.00064 33.5 7.8 56 265-324 125-184 (262)
289 2px0_A Flagellar biosynthesis 63.1 7.2 0.00025 37.4 4.9 17 55-71 105-121 (296)
290 1kag_A SKI, shikimate kinase I 63.0 3.7 0.00013 35.4 2.6 17 55-71 4-20 (173)
291 1ry6_A Internal kinesin; kines 63.0 4.8 0.00017 39.8 3.6 19 54-72 82-102 (360)
292 1zp6_A Hypothetical protein AT 62.9 2.8 9.7E-05 36.9 1.8 18 53-70 7-24 (191)
293 3gk5_A Uncharacterized rhodane 62.9 9.3 0.00032 30.2 4.8 37 265-301 54-90 (108)
294 4b4t_M 26S protease regulatory 62.8 3.1 0.00011 42.3 2.3 47 22-71 182-231 (434)
295 3a00_A Guanylate kinase, GMP k 62.7 3.7 0.00013 36.1 2.6 16 55-70 1-16 (186)
296 2gxq_A Heat resistant RNA depe 62.6 16 0.00056 32.1 7.0 55 266-324 72-128 (207)
297 1z6g_A Guanylate kinase; struc 62.5 3.8 0.00013 37.3 2.7 18 53-70 21-38 (218)
298 1xwi_A SKD1 protein; VPS4B, AA 61.9 3.4 0.00012 40.2 2.3 16 56-71 46-61 (322)
299 2r8r_A Sensor protein; KDPD, P 61.8 6.7 0.00023 36.0 4.1 26 54-80 4-30 (228)
300 1kht_A Adenylate kinase; phosp 61.8 3.7 0.00013 35.9 2.4 17 55-71 3-19 (192)
301 3u4q_B ATP-dependent helicase/ 61.6 6.4 0.00022 45.6 4.9 31 267-297 343-374 (1166)
302 3vkg_A Dynein heavy chain, cyt 61.6 13 0.00043 47.3 7.6 70 25-100 873-946 (3245)
303 3t15_A Ribulose bisphosphate c 61.3 3.3 0.00011 39.7 2.1 16 56-71 37-52 (293)
304 2l82_A Designed protein OR32; 61.3 36 0.0012 26.7 7.5 56 269-324 5-60 (162)
305 2iut_A DNA translocase FTSK; n 61.1 10 0.00034 40.0 5.8 41 56-100 215-255 (574)
306 2og2_A Putative signal recogni 61.0 6 0.00021 39.2 3.9 25 56-82 158-182 (359)
307 3crm_A TRNA delta(2)-isopenten 60.6 3.8 0.00013 39.9 2.4 16 56-71 6-21 (323)
308 3e70_C DPA, signal recognition 60.5 6.3 0.00022 38.5 3.9 26 55-82 129-154 (328)
309 2zr9_A Protein RECA, recombina 60.4 6.9 0.00024 38.5 4.3 44 48-99 48-97 (349)
310 1ly1_A Polynucleotide kinase; 60.4 3.9 0.00013 35.4 2.2 15 57-71 4-18 (181)
311 2v6i_A RNA helicase; membrane, 60.4 11 0.00038 38.1 6.0 55 91-151 171-225 (431)
312 4fcw_A Chaperone protein CLPB; 60.3 4.6 0.00016 38.6 2.9 16 56-71 48-63 (311)
313 3d3q_A TRNA delta(2)-isopenten 60.3 3.9 0.00013 40.2 2.3 15 57-71 9-23 (340)
314 1u94_A RECA protein, recombina 60.2 7.4 0.00025 38.5 4.4 37 55-99 63-99 (356)
315 4gp7_A Metallophosphoesterase; 60.2 3.6 0.00012 35.8 1.9 19 54-72 8-26 (171)
316 1yks_A Genome polyprotein [con 60.1 12 0.0004 38.1 6.1 69 91-173 177-245 (440)
317 1ex7_A Guanylate kinase; subst 60.0 4.4 0.00015 36.0 2.5 15 56-70 2-16 (186)
318 3eph_A TRNA isopentenyltransfe 59.8 3.9 0.00013 41.2 2.3 15 57-71 4-18 (409)
319 2i4i_A ATP-dependent RNA helic 59.8 25 0.00085 34.8 8.5 72 90-174 275-350 (417)
320 4eun_A Thermoresistant glucoki 59.6 4.4 0.00015 36.1 2.5 18 54-71 28-45 (200)
321 1vma_A Cell division protein F 59.5 6.9 0.00024 37.8 4.0 15 57-71 106-120 (306)
322 3kb2_A SPBC2 prophage-derived 59.1 4.2 0.00014 34.9 2.2 15 57-71 3-17 (173)
323 3fht_A ATP-dependent RNA helic 59.0 44 0.0015 32.8 10.2 72 90-174 265-340 (412)
324 1znw_A Guanylate kinase, GMP k 58.9 4.6 0.00016 36.3 2.5 20 51-70 16-35 (207)
325 1wrb_A DJVLGB; RNA helicase, D 58.7 18 0.00062 33.2 6.8 55 266-324 100-158 (253)
326 2z43_A DNA repair and recombin 58.7 7.5 0.00026 37.8 4.2 51 48-100 95-150 (324)
327 1xjc_A MOBB protein homolog; s 58.7 11 0.00038 32.8 4.8 23 57-80 6-28 (169)
328 1nlf_A Regulatory protein REPA 58.6 16 0.00054 34.3 6.4 21 52-72 27-47 (279)
329 1um8_A ATP-dependent CLP prote 58.5 4.6 0.00016 40.1 2.6 17 55-71 72-88 (376)
330 2c9o_A RUVB-like 1; hexameric 58.4 4.3 0.00015 41.7 2.4 18 55-72 63-80 (456)
331 2yvu_A Probable adenylyl-sulfa 58.3 8.1 0.00028 33.7 4.0 17 55-71 13-29 (186)
332 1knq_A Gluconate kinase; ALFA/ 57.9 4.1 0.00014 35.3 1.9 17 55-71 8-24 (175)
333 3c8u_A Fructokinase; YP_612366 57.3 5.6 0.00019 35.7 2.8 25 55-81 22-46 (208)
334 1ixz_A ATP-dependent metallopr 57.2 4.6 0.00016 37.5 2.2 16 56-71 50-65 (254)
335 2yhs_A FTSY, cell division pro 56.8 7.7 0.00026 40.1 4.0 34 56-97 294-327 (503)
336 2r2a_A Uncharacterized protein 56.7 7 0.00024 35.1 3.3 16 57-72 7-22 (199)
337 4a74_A DNA repair and recombin 56.7 10 0.00034 34.2 4.5 18 54-71 24-41 (231)
338 3d8b_A Fidgetin-like protein 1 56.7 4.7 0.00016 39.8 2.3 17 55-71 117-133 (357)
339 2wv9_A Flavivirin protease NS2 56.6 18 0.00062 39.0 7.1 70 90-173 409-478 (673)
340 3nwj_A ATSK2; P loop, shikimat 56.5 5.9 0.0002 37.0 2.9 19 53-71 46-64 (250)
341 3cm0_A Adenylate kinase; ATP-b 56.4 3.9 0.00013 35.8 1.5 18 54-71 3-20 (186)
342 2v9p_A Replication protein E1; 55.8 6.9 0.00024 37.7 3.3 26 54-81 125-150 (305)
343 3g5j_A Putative ATP/GTP bindin 55.7 14 0.00047 30.1 4.8 35 267-301 90-125 (134)
344 1f2t_A RAD50 ABC-ATPase; DNA d 55.7 8.3 0.00028 32.7 3.4 15 57-71 25-39 (149)
345 2i3b_A HCR-ntpase, human cance 55.4 9.6 0.00033 33.8 4.0 40 167-209 104-145 (189)
346 2r62_A Cell division protease 55.4 2.8 9.7E-05 39.3 0.4 17 55-71 44-60 (268)
347 2d7d_A Uvrabc system protein B 55.3 96 0.0033 33.2 12.6 78 90-180 444-525 (661)
348 3dkp_A Probable ATP-dependent 55.2 4.5 0.00015 37.2 1.8 56 266-324 98-157 (245)
349 1m7g_A Adenylylsulfate kinase; 55.1 6.3 0.00021 35.4 2.7 30 41-71 12-41 (211)
350 1s96_A Guanylate kinase, GMP k 55.1 5.8 0.0002 36.2 2.5 18 53-70 14-31 (219)
351 4h1g_A Maltose binding protein 55.1 7.8 0.00027 42.3 3.9 26 47-72 453-480 (715)
352 3vfd_A Spastin; ATPase, microt 54.9 5.2 0.00018 40.0 2.3 17 55-71 148-164 (389)
353 3nh6_A ATP-binding cassette SU 54.8 4.8 0.00017 38.9 2.0 17 54-70 79-95 (306)
354 1zu4_A FTSY; GTPase, signal re 54.7 9 0.00031 37.2 3.9 15 57-71 107-121 (320)
355 4b4t_H 26S protease regulatory 54.7 4.5 0.00015 41.4 1.8 47 22-71 210-259 (467)
356 4a2q_A RIG-I, retinoic acid in 54.6 22 0.00075 39.2 7.6 55 266-324 296-354 (797)
357 3tif_A Uncharacterized ABC tra 54.5 5.1 0.00018 37.0 2.0 17 54-70 30-46 (235)
358 3fmo_B ATP-dependent RNA helic 54.1 10 0.00036 36.2 4.3 51 267-324 163-218 (300)
359 3p32_A Probable GTPase RV1496/ 54.1 87 0.003 30.5 11.2 15 57-71 81-95 (355)
360 3eme_A Rhodanese-like domain p 53.9 8.8 0.0003 30.0 3.1 36 265-300 55-90 (103)
361 3foj_A Uncharacterized protein 53.8 9.6 0.00033 29.6 3.3 36 265-300 55-90 (100)
362 3uie_A Adenylyl-sulfate kinase 53.8 5.3 0.00018 35.6 2.0 30 41-71 12-41 (200)
363 1wv9_A Rhodanese homolog TT165 53.6 11 0.00038 28.8 3.6 35 267-301 54-88 (94)
364 3lnc_A Guanylate kinase, GMP k 53.6 4.5 0.00015 37.0 1.5 18 54-71 26-43 (231)
365 1tev_A UMP-CMP kinase; ploop, 53.5 5.3 0.00018 35.0 1.9 18 55-72 3-20 (196)
366 4a2p_A RIG-I, retinoic acid in 53.1 20 0.00069 37.1 6.7 56 266-325 55-114 (556)
367 1q0u_A Bstdead; DEAD protein, 52.9 11 0.00039 33.8 4.1 55 266-324 72-134 (219)
368 2cvh_A DNA repair and recombin 52.9 8 0.00027 34.6 3.1 19 54-72 19-37 (220)
369 1hqc_A RUVB; extended AAA-ATPa 52.7 4.3 0.00015 39.1 1.2 16 56-71 39-54 (324)
370 3t61_A Gluconokinase; PSI-biol 52.6 6 0.00021 35.2 2.1 16 56-71 19-34 (202)
371 2rhm_A Putative kinase; P-loop 52.5 5.5 0.00019 34.9 1.8 17 55-71 5-21 (193)
372 2l8b_A Protein TRAI, DNA helic 52.5 28 0.00097 30.7 6.3 59 41-106 35-95 (189)
373 1g8p_A Magnesium-chelatase 38 52.3 6.7 0.00023 38.1 2.6 17 55-71 45-61 (350)
374 3hix_A ALR3790 protein; rhodan 52.3 19 0.00064 28.2 4.9 36 265-300 51-87 (106)
375 2c95_A Adenylate kinase 1; tra 52.3 6.6 0.00023 34.5 2.3 18 54-71 8-25 (196)
376 2z83_A Helicase/nucleoside tri 52.1 21 0.00072 36.4 6.5 54 91-150 190-243 (459)
377 1ye8_A Protein THEP1, hypothet 52.0 10 0.00035 33.2 3.5 22 57-80 2-23 (178)
378 3tbk_A RIG-I helicase domain; 52.0 16 0.00056 37.7 5.7 56 266-325 52-111 (555)
379 2bdt_A BH3686; alpha-beta prot 52.0 4.8 0.00016 35.3 1.4 16 56-71 3-18 (189)
380 3pey_A ATP-dependent RNA helic 51.8 45 0.0015 32.4 8.8 76 90-178 242-321 (395)
381 2f1r_A Molybdopterin-guanine d 51.7 8.5 0.00029 33.6 2.9 24 57-82 4-27 (171)
382 1iy2_A ATP-dependent metallopr 51.7 6.4 0.00022 37.1 2.3 16 56-71 74-89 (278)
383 3f9v_A Minichromosome maintena 51.6 6.4 0.00022 41.9 2.5 15 57-71 329-343 (595)
384 1rz3_A Hypothetical protein rb 51.5 11 0.00039 33.4 3.8 16 56-71 23-38 (201)
385 3kta_A Chromosome segregation 51.4 8.1 0.00028 33.5 2.8 15 57-71 28-42 (182)
386 2v54_A DTMP kinase, thymidylat 51.3 7.4 0.00025 34.4 2.5 18 54-71 3-20 (204)
387 2zan_A Vacuolar protein sortin 51.2 6.4 0.00022 40.2 2.3 17 55-71 167-183 (444)
388 2h54_A Caspase-1; allosteric s 51.1 44 0.0015 29.2 7.5 48 266-314 43-101 (178)
389 2fsf_A Preprotein translocase 50.7 37 0.0013 37.4 8.2 54 265-324 114-171 (853)
390 3p45_A Caspase-6; protease, hu 50.6 50 0.0017 28.9 7.7 58 265-323 43-117 (179)
391 3h11_B Caspase-8; cell death, 50.6 28 0.00097 32.7 6.6 49 265-314 16-85 (271)
392 2bwj_A Adenylate kinase 5; pho 50.6 7.2 0.00025 34.3 2.3 18 54-71 11-28 (199)
393 1via_A Shikimate kinase; struc 50.5 7.6 0.00026 33.5 2.4 16 56-71 5-20 (175)
394 3asz_A Uridine kinase; cytidin 50.4 6.1 0.00021 35.3 1.8 18 54-71 5-22 (211)
395 1zd8_A GTP:AMP phosphotransfer 50.0 7.3 0.00025 35.4 2.3 17 55-71 7-23 (227)
396 3fb4_A Adenylate kinase; psych 50.0 7 0.00024 35.1 2.2 16 57-72 2-17 (216)
397 2pez_A Bifunctional 3'-phospho 50.0 6.8 0.00023 34.0 2.0 18 54-71 4-21 (179)
398 2iyv_A Shikimate kinase, SK; t 49.9 8.3 0.00028 33.6 2.6 17 56-72 3-19 (184)
399 3qf7_A RAD50; ABC-ATPase, ATPa 49.7 6.9 0.00024 38.8 2.2 16 57-72 25-40 (365)
400 3io5_A Recombination and repai 49.7 14 0.00047 35.9 4.2 41 57-103 30-70 (333)
401 1e6c_A Shikimate kinase; phosp 49.6 8.2 0.00028 33.1 2.5 16 56-71 3-18 (173)
402 2ff7_A Alpha-hemolysin translo 49.5 6.8 0.00023 36.4 2.0 17 54-70 34-50 (247)
403 2jlq_A Serine protease subunit 49.5 20 0.00068 36.5 5.8 69 91-173 188-256 (451)
404 1pyo_A Caspase-2; apoptosis, c 49.5 31 0.0011 29.8 6.1 58 265-323 32-107 (167)
405 1aky_A Adenylate kinase; ATP:A 49.3 8.2 0.00028 34.8 2.5 17 55-71 4-20 (220)
406 3tqc_A Pantothenate kinase; bi 49.1 28 0.00094 33.7 6.4 23 58-82 95-117 (321)
407 1fuu_A Yeast initiation factor 48.9 35 0.0012 33.3 7.4 55 265-324 88-146 (394)
408 3h11_A CAsp8 and FADD-like apo 48.7 12 0.00042 35.3 3.7 58 265-323 42-103 (272)
409 3pxg_A Negative regulator of g 48.5 9.6 0.00033 39.2 3.2 17 55-71 201-217 (468)
410 1zuh_A Shikimate kinase; alpha 48.5 8.2 0.00028 33.0 2.3 17 56-72 8-24 (168)
411 2x8a_A Nuclear valosin-contain 48.5 7.4 0.00025 36.8 2.1 15 56-70 45-59 (274)
412 1cke_A CK, MSSA, protein (cyti 48.4 7.8 0.00027 35.0 2.2 16 56-71 6-21 (227)
413 1c4o_A DNA nucleotide excision 48.4 57 0.002 35.0 9.4 77 90-179 438-518 (664)
414 1nks_A Adenylate kinase; therm 48.4 7.5 0.00026 33.9 2.1 15 57-71 3-17 (194)
415 3gfo_A Cobalt import ATP-bindi 48.2 7.3 0.00025 36.9 2.0 17 54-70 33-49 (275)
416 2qt1_A Nicotinamide riboside k 48.2 7 0.00024 34.9 1.8 18 54-71 20-37 (207)
417 1nij_A Hypothetical protein YJ 48.1 10 0.00035 36.6 3.2 33 58-100 7-39 (318)
418 1gvn_B Zeta; postsegregational 48.1 6.5 0.00022 37.5 1.7 16 56-71 34-49 (287)
419 3dl0_A Adenylate kinase; phosp 48.1 7.9 0.00027 34.8 2.2 16 57-72 2-17 (216)
420 1qtn_A Caspase-8; apoptosis, d 48.0 44 0.0015 28.7 6.9 58 265-323 22-103 (164)
421 1ak2_A Adenylate kinase isoenz 48.0 8.4 0.00029 35.2 2.4 18 54-71 15-32 (233)
422 2xau_A PRE-mRNA-splicing facto 47.9 86 0.0029 34.3 10.9 77 90-173 302-392 (773)
423 3k1j_A LON protease, ATP-depen 47.9 12 0.00042 39.8 4.0 25 47-71 52-76 (604)
424 2cdn_A Adenylate kinase; phosp 47.9 9.1 0.00031 33.9 2.5 16 56-71 21-36 (201)
425 3flh_A Uncharacterized protein 47.8 15 0.00051 29.8 3.7 36 265-300 70-107 (124)
426 1qf9_A UMP/CMP kinase, protein 47.7 7.8 0.00027 33.8 2.0 15 57-71 8-22 (194)
427 1zak_A Adenylate kinase; ATP:A 47.6 8.9 0.0003 34.6 2.5 17 55-71 5-21 (222)
428 2plr_A DTMP kinase, probable t 47.3 7.8 0.00027 34.4 2.0 18 54-71 3-20 (213)
429 1v5w_A DMC1, meiotic recombina 47.1 14 0.00049 36.1 4.1 50 49-100 111-165 (343)
430 1in4_A RUVB, holliday junction 47.0 11 0.00036 36.8 3.1 16 56-71 52-67 (334)
431 1tf5_A Preprotein translocase 47.0 50 0.0017 36.3 8.5 54 265-324 123-180 (844)
432 1gmx_A GLPE protein; transfera 46.8 23 0.00077 27.8 4.5 37 265-301 57-94 (108)
433 2db3_A ATP-dependent RNA helic 46.7 29 0.00099 35.0 6.5 55 266-324 129-187 (434)
434 1ukz_A Uridylate kinase; trans 46.3 8.8 0.0003 34.0 2.2 16 56-71 16-31 (203)
435 2wwf_A Thymidilate kinase, put 46.2 9.1 0.00031 34.0 2.3 18 54-71 9-26 (212)
436 1g41_A Heat shock protein HSLU 46.2 9.1 0.00031 39.0 2.5 17 55-71 50-66 (444)
437 3iwh_A Rhodanese-like domain p 46.2 14 0.00048 29.1 3.1 36 265-300 55-90 (103)
438 3ice_A Transcription terminati 46.2 43 0.0015 33.5 7.2 31 41-71 157-190 (422)
439 1np6_A Molybdopterin-guanine d 46.1 14 0.00048 32.3 3.4 22 57-79 8-29 (174)
440 3auy_A DNA double-strand break 46.0 8.2 0.00028 38.3 2.1 21 57-79 27-47 (371)
441 2pt5_A Shikimate kinase, SK; a 45.9 9.2 0.00031 32.6 2.2 15 57-71 2-16 (168)
442 2if2_A Dephospho-COA kinase; a 45.7 8.8 0.0003 34.0 2.1 15 57-71 3-17 (204)
443 2ixe_A Antigen peptide transpo 45.6 8.5 0.00029 36.4 2.0 17 54-70 44-60 (271)
444 1nn5_A Similar to deoxythymidy 45.5 9.7 0.00033 33.9 2.4 18 54-71 8-25 (215)
445 2dko_A Caspase-3; low barrier 45.3 39 0.0013 28.5 5.9 58 265-323 15-89 (146)
446 1c9k_A COBU, adenosylcobinamid 45.1 34 0.0012 30.0 5.8 45 58-114 2-46 (180)
447 3tlx_A Adenylate kinase 2; str 45.0 12 0.0004 34.6 2.9 17 55-71 29-45 (243)
448 1gtv_A TMK, thymidylate kinase 44.9 10 0.00034 33.9 2.3 13 58-70 3-15 (214)
449 3qks_A DNA double-strand break 44.8 15 0.0005 32.9 3.4 23 57-81 25-47 (203)
450 2cbz_A Multidrug resistance-as 44.7 8.5 0.00029 35.5 1.9 17 54-70 30-46 (237)
451 2jaq_A Deoxyguanosine kinase; 44.5 9.7 0.00033 33.5 2.2 15 57-71 2-16 (205)
452 4e22_A Cytidylate kinase; P-lo 44.5 10 0.00036 35.1 2.5 18 54-71 26-43 (252)
453 2z0m_A 337AA long hypothetical 44.5 36 0.0012 32.3 6.5 54 266-324 56-113 (337)
454 2vli_A Antibiotic resistance p 44.3 7.8 0.00027 33.6 1.5 19 54-72 4-22 (183)
455 1sxj_A Activator 1 95 kDa subu 43.9 12 0.0004 39.0 3.0 41 167-209 147-189 (516)
456 2olj_A Amino acid ABC transpor 43.9 9.6 0.00033 35.8 2.1 17 54-70 49-65 (263)
457 1jjv_A Dephospho-COA kinase; P 43.7 10 0.00034 33.8 2.1 15 57-71 4-18 (206)
458 4akg_A Glutathione S-transfera 43.6 9.6 0.00033 47.8 2.5 20 52-71 1264-1283(2695)
459 1tq1_A AT5G66040, senescence-a 43.6 17 0.0006 29.6 3.5 37 265-301 81-118 (129)
460 3a4m_A L-seryl-tRNA(SEC) kinas 43.6 10 0.00035 35.4 2.2 16 56-71 5-20 (260)
461 3be4_A Adenylate kinase; malar 43.5 11 0.00037 34.0 2.3 17 55-71 5-21 (217)
462 4edh_A DTMP kinase, thymidylat 43.5 23 0.00078 32.0 4.5 19 53-71 4-22 (213)
463 1htw_A HI0065; nucleotide-bind 43.4 11 0.00037 32.4 2.2 25 54-80 32-56 (158)
464 2yjt_D ATP-dependent RNA helic 49.3 5 0.00017 34.7 0.0 55 90-150 29-87 (170)
465 3e4c_A Caspase-1; zymogen, inf 43.2 47 0.0016 31.8 6.9 47 267-314 61-118 (302)
466 2i1q_A DNA repair and recombin 43.2 17 0.00059 34.9 3.9 25 48-72 86-115 (322)
467 2pbr_A DTMP kinase, thymidylat 43.2 10 0.00035 33.0 2.1 14 58-71 3-16 (195)
468 3aez_A Pantothenate kinase; tr 43.2 14 0.00049 35.6 3.3 26 55-82 90-115 (312)
469 2z0h_A DTMP kinase, thymidylat 43.1 11 0.00036 33.1 2.2 14 58-71 3-16 (197)
470 2fsx_A RV0390, COG0607: rhodan 43.0 26 0.0009 29.3 4.6 37 265-301 79-116 (148)
471 1odf_A YGR205W, hypothetical 3 42.8 16 0.00055 34.8 3.6 24 57-82 33-56 (290)
472 4gl2_A Interferon-induced heli 42.5 4.7 0.00016 43.7 -0.4 55 267-325 57-115 (699)
473 1s2m_A Putative ATP-dependent 42.3 53 0.0018 32.1 7.6 56 265-324 88-147 (400)
474 3eiq_A Eukaryotic initiation f 42.3 61 0.0021 31.8 8.0 57 265-324 107-167 (414)
475 1e4v_A Adenylate kinase; trans 42.2 11 0.00036 33.9 2.0 15 57-71 2-16 (214)
476 2bbw_A Adenylate kinase 4, AK4 42.1 12 0.00041 34.5 2.4 17 55-71 27-43 (246)
477 4a2w_A RIG-I, retinoic acid in 42.0 31 0.0011 38.8 6.2 55 266-324 296-354 (936)
478 1sgw_A Putative ABC transporte 41.9 13 0.00046 33.6 2.7 17 54-70 34-50 (214)
479 2jtq_A Phage shock protein E; 41.9 53 0.0018 24.2 5.8 35 265-300 40-75 (85)
480 1uf9_A TT1252 protein; P-loop, 41.8 11 0.00037 33.2 2.1 15 57-71 10-24 (203)
481 3b5x_A Lipid A export ATP-bind 41.3 14 0.00046 39.2 3.0 25 54-80 368-392 (582)
482 2fp3_A Caspase NC; apoptosis, 41.2 72 0.0025 30.7 7.9 49 265-314 60-120 (316)
483 2pze_A Cystic fibrosis transme 41.2 13 0.00044 34.0 2.5 17 54-70 33-49 (229)
484 2p5t_B PEZT; postsegregational 41.1 8.4 0.00029 35.8 1.2 16 56-71 33-48 (253)
485 2r2a_A Uncharacterized protein 40.9 14 0.00049 33.0 2.7 40 169-208 88-132 (199)
486 1nkt_A Preprotein translocase 40.8 62 0.0021 35.8 8.1 54 265-324 151-208 (922)
487 3cmu_A Protein RECA, recombina 40.8 24 0.00081 43.0 5.1 46 54-108 1080-1125(2050)
488 2xb4_A Adenylate kinase; ATP-b 40.7 12 0.00041 33.9 2.2 15 57-71 2-16 (223)
489 3mm4_A Histidine kinase homolo 40.7 1.8E+02 0.0062 25.2 11.5 129 52-209 17-161 (206)
490 3bs4_A Uncharacterized protein 40.7 30 0.001 32.4 4.9 52 55-115 21-72 (260)
491 2fz4_A DNA repair protein RAD2 40.4 50 0.0017 30.1 6.5 46 266-324 133-179 (237)
492 2ghi_A Transport protein; mult 40.4 13 0.00045 34.8 2.5 17 54-70 45-61 (260)
493 3pxi_A Negative regulator of g 40.4 15 0.00052 40.2 3.3 17 55-71 201-217 (758)
494 2whx_A Serine protease/ntpase/ 40.1 35 0.0012 36.3 6.0 55 91-151 355-409 (618)
495 2onk_A Molybdate/tungstate ABC 39.5 13 0.00046 34.2 2.3 15 56-70 25-39 (240)
496 3od5_A Caspase-6; caspase doma 39.4 68 0.0023 30.2 7.3 49 265-314 20-82 (278)
497 1vht_A Dephospho-COA kinase; s 39.3 13 0.00045 33.3 2.2 16 56-71 5-20 (218)
498 3sr0_A Adenylate kinase; phosp 39.3 13 0.00045 33.4 2.2 14 58-71 3-16 (206)
499 1pzn_A RAD51, DNA repair and r 39.2 26 0.00088 34.3 4.5 16 56-71 132-147 (349)
500 1nw9_B Caspase 9, apoptosis-re 39.2 91 0.0031 29.2 8.2 58 265-323 20-94 (277)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=5.3e-62 Score=512.59 Aligned_cols=375 Identities=26% Similarity=0.416 Sum_probs=332.7
Q ss_pred cccccCCccchhcccCCccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhh
Q psy16633 4 KLGWLEPTLIQVYFELPFTFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINL 83 (540)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~ 83 (540)
..|...|.++.+|.+ ++|++.+++++.++||..|||+|+++||.+++|+|++++||||||||++|++|+++.++..
T Consensus 46 ~~~~~~p~~~~~f~~----~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~ 121 (434)
T 2db3_A 46 VTGSDVPQPIQHFTS----ADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLED 121 (434)
T ss_dssp EESSSCCCCCCCGGG----SCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHS
T ss_pred ecCCCCCCCcCChhh----cCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhc
Confidence 446667777777776 6789999999999999999999999999999999999999999999999999999999875
Q ss_pred cccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcC
Q psy16633 84 KQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTL 163 (540)
Q Consensus 84 ~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~ 163 (540)
.......+.++||++||++|+.|+++.+++++... .+.+..++|+.....+...+..+++|+|+||++|++++.+...
T Consensus 122 ~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~--~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~ 199 (434)
T 2db3_A 122 PHELELGRPQVVIVSPTRELAIQIFNEARKFAFES--YLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFI 199 (434)
T ss_dssp CCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTS--SCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSC
T ss_pred ccccccCCccEEEEecCHHHHHHHHHHHHHHhccC--CcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCc
Confidence 33223457899999999999999999999998765 5677778888887777777778899999999999999988877
Q ss_pred CccCCccEEEEcCccccccCCcHHHHHHHHHhC--CcccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeE
Q psy16633 164 DLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFL--PKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLA 241 (540)
Q Consensus 164 ~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~l--~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~ 241 (540)
.+ .+++++|+||||++++++|...+..++..+ +...|+++||||+++.+..+...++.+|..+...... .....+.
T Consensus 200 ~l-~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~-~~~~~i~ 277 (434)
T 2db3_A 200 TF-EDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVG-GACSDVK 277 (434)
T ss_dssp CC-TTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTT-CCCTTEE
T ss_pred cc-ccCCeEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEecccc-ccccccc
Confidence 66 899999999999999999999999999885 5678999999999999999999999999988876544 2345678
Q ss_pred EEEEEcCcccHHHHHHHHHHhcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEE
Q psy16633 242 HYHILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVII 321 (540)
Q Consensus 242 ~~~~~~~~~~k~~~l~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLI 321 (540)
+.+..+....|...+..++... ..++||||++++.|+.++..|.+.|+.+..+||++++.+|..+++.|++|..+|||
T Consensus 278 ~~~~~~~~~~k~~~l~~~l~~~--~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLv 355 (434)
T 2db3_A 278 QTIYEVNKYAKRSKLIEILSEQ--ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLI 355 (434)
T ss_dssp EEEEECCGGGHHHHHHHHHHHC--CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEE
T ss_pred eEEEEeCcHHHHHHHHHHHHhC--CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEE
Confidence 8888888888998888888764 34599999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCccCCcccccccccccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEEeccc-cccc
Q psy16633 322 ASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLR-EQDL 400 (540)
Q Consensus 322 aT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~-e~~~ 400 (540)
||+ ++++|+|+|++++||+||+|.+..+|+||+|||||.|+.|.+++|+++. +...
T Consensus 356 aT~-----------------------v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~ 412 (434)
T 2db3_A 356 ATS-----------------------VASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAI 412 (434)
T ss_dssp ECG-----------------------GGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGG
T ss_pred Ech-----------------------hhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHH
Confidence 999 9999999999999999999999999999999999999999999999955 4444
Q ss_pred cccccchhhhhhhhhHHHHHHHHHHhhc
Q psy16633 401 MNDGTALSFVSLREQDLMNDVNEYLMTN 428 (540)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 428 (540)
+..+.+.+...
T Consensus 413 -----------------~~~l~~~l~~~ 423 (434)
T 2db3_A 413 -----------------AADLVKILEGS 423 (434)
T ss_dssp -----------------HHHHHHHHHHT
T ss_pred -----------------HHHHHHHHHHc
Confidence 66677776553
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.3e-58 Score=482.48 Aligned_cols=377 Identities=26% Similarity=0.424 Sum_probs=328.7
Q ss_pred cccccCCccchhcccCCccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhh
Q psy16633 4 KLGWLEPTLIQVYFELPFTFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINL 83 (540)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~ 83 (540)
..|-..|.++.+|++ ++|++.++++|..+||..||++|+++||.+++|+|+++.||||||||++|++|+++.+...
T Consensus 5 ~~~~~~p~~~~~f~~----~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~ 80 (417)
T 2i4i_A 5 ATGNNCPPHIESFSD----VEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSD 80 (417)
T ss_dssp EESTTCCCCCSSGGG----SCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred cCCCcCCcccCCHhh----CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhc
Confidence 345567888887777 6789999999999999999999999999999999999999999999999999999998764
Q ss_pred ccc-------------ccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEC
Q psy16633 84 KQT-------------AQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVAT 150 (540)
Q Consensus 84 ~~~-------------~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~T 150 (540)
... ....+.++||++||++|+.|+++.++.++... .+.+..+.|+.....+...+..+++|+|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T 158 (417)
T 2i4i_A 81 GPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRS--RVRPCVVYGGADIGQQIRDLERGCHLLVAT 158 (417)
T ss_dssp CCCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTS--SCCEEEECSSSCHHHHHHHHTTCCSEEEEC
T ss_pred cccchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcC--CceEEEEECCCCHHHHHHHhhCCCCEEEEC
Confidence 210 11234789999999999999999999988655 677888888887776666677789999999
Q ss_pred hHHHHHHHhcCcCCccCCccEEEEcCccccccCCcHHHHHHHHHh--CCc--ccceeeEeeeccHHHHHHHHHhcCCCeE
Q psy16633 151 PARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKF--LPK--LYQAILASATLSEDVLSLKHLILRNPVI 226 (540)
Q Consensus 151 p~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~--l~~--~~q~il~SATl~~~~~~~~~~~l~~p~~ 226 (540)
|++|.+++..+...+ ..+++||+||||++.+++|...+..++.. ++. ..|+++||||+++.+..+...++.+|..
T Consensus 159 p~~l~~~l~~~~~~~-~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~ 237 (417)
T 2i4i_A 159 PGRLVDMMERGKIGL-DFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIF 237 (417)
T ss_dssp HHHHHHHHHTTSBCC-TTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEE
T ss_pred hHHHHHHHHcCCcCh-hhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEE
Confidence 999999998877666 88999999999999999999999999874 333 6799999999999999999999999988
Q ss_pred EEecCCCCCCCCCeEEEEEEcCcccHHHHHHHHHHhcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHH
Q psy16633 227 LKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARC 306 (540)
Q Consensus 227 i~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~ 306 (540)
+...... .....+.+.+..+...++...+..+++.....+++||||++++.++.++..|.+.|+.+..+||++++.+|.
T Consensus 238 ~~~~~~~-~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~ 316 (417)
T 2i4i_A 238 LAVGRVG-STSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDRE 316 (417)
T ss_dssp EEEC-----CCSSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHH
T ss_pred EEeCCCC-CCccCceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHH
Confidence 7765443 334567788888888999999999988766678999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCccEEEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCC
Q psy16633 307 HAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQ 386 (540)
Q Consensus 307 ~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~ 386 (540)
.+++.|++|..+|||||+ ++++|+|+|++++||+||+|.|..+|+||+||+||.|+.
T Consensus 317 ~~~~~f~~g~~~vlvaT~-----------------------~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~ 373 (417)
T 2i4i_A 317 EALHQFRSGKSPILVATA-----------------------VAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 373 (417)
T ss_dssp HHHHHHHHTSSCEEEECH-----------------------HHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CC
T ss_pred HHHHHHHcCCCCEEEECC-----------------------hhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCC
Confidence 999999999999999999 999999999999999999999999999999999999999
Q ss_pred ceEEEEeccccccccccccchhhhhhhhhHHHHHHHHHHhhc
Q psy16633 387 GTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTN 428 (540)
Q Consensus 387 g~~i~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 428 (540)
|.+++|+++.+... +..+.+.+...
T Consensus 374 g~~~~~~~~~~~~~-----------------~~~l~~~~~~~ 398 (417)
T 2i4i_A 374 GLATSFFNERNINI-----------------TKDLLDLLVEA 398 (417)
T ss_dssp EEEEEEECGGGGGG-----------------HHHHHHHHHHT
T ss_pred ceEEEEEccccHHH-----------------HHHHHHHHHHh
Confidence 99999999988877 77777776543
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=3.6e-57 Score=472.61 Aligned_cols=357 Identities=28% Similarity=0.491 Sum_probs=318.3
Q ss_pred cCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcH
Q psy16633 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSK 101 (540)
Q Consensus 22 ~~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~ 101 (540)
+++|++.+++++.++||..|+++|+++++.+++|+|+++.||||||||++|++|+++.+.. ...+.++||++||+
T Consensus 41 ~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~-----~~~~~~~lil~Pt~ 115 (410)
T 2j0s_A 41 TMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI-----QVRETQALILAPTR 115 (410)
T ss_dssp GGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCT-----TSCSCCEEEECSSH
T ss_pred hcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhh-----ccCCceEEEEcCcH
Confidence 5789999999999999999999999999999999999999999999999999999987632 23578999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccc
Q psy16633 102 ELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVF 181 (540)
Q Consensus 102 ~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~ 181 (540)
+|+.|+++.+..++... .+.+..+.|+.....+...+..+++|+|+||+++.+++..+...+ ..+++||+||||++.
T Consensus 116 ~L~~q~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~-~~~~~vViDEah~~~ 192 (410)
T 2j0s_A 116 ELAVQIQKGLLALGDYM--NVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRT-RAIKMLVLDEADEML 192 (410)
T ss_dssp HHHHHHHHHHHHHTTTT--TCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCC-TTCCEEEEETHHHHT
T ss_pred HHHHHHHHHHHHHhccC--CeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccH-hheeEEEEccHHHHH
Confidence 99999999999988765 677778888877776666666789999999999999998877666 889999999999999
Q ss_pred cCCcHHHHHHHHHhCCcccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcCcc-cHHHHHHHHH
Q psy16633 182 SFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQED-EKATILYTLL 260 (540)
Q Consensus 182 ~~~~~~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~~-~k~~~l~~ll 260 (540)
++++...+..++..+++..|++++|||+++.+..+...++.+|..+....... ....+.+++..+... .+...+..++
T Consensus 193 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~~l~~~~ 271 (410)
T 2j0s_A 193 NKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDEL-TLEGIKQFFVAVEREEWKFDTLCDLY 271 (410)
T ss_dssp STTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGC-SCTTEEEEEEEESSTTHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccc-cCCCceEEEEEeCcHHhHHHHHHHHH
Confidence 99999999999999999999999999999998888888889998876654432 335567777766544 4788888877
Q ss_pred HhcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccccccc
Q psy16633 261 KLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRK 340 (540)
Q Consensus 261 ~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~ 340 (540)
... ..+++||||++++.++.++..|.+.|+.+..+||++++.+|..+++.|++|..+|||||+
T Consensus 272 ~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~---------------- 334 (410)
T 2j0s_A 272 DTL-TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD---------------- 334 (410)
T ss_dssp HHH-TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG----------------
T ss_pred Hhc-CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC----------------
Confidence 654 456999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEEeccccccccccccchhhhhhhhhHHHHH
Q psy16633 341 RKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMND 420 (540)
Q Consensus 341 ~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 420 (540)
++++|+|+|++++||+||+|.+..+|+||+||+||.|+.|.+++|+.+.+... ++.
T Consensus 335 -------~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~-----------------~~~ 390 (410)
T 2j0s_A 335 -------VWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRI-----------------LRD 390 (410)
T ss_dssp -------GGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHH-----------------HHH
T ss_pred -------hhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHH-----------------HHH
Confidence 99999999999999999999999999999999999999999999999888777 888
Q ss_pred HHHHHhhc
Q psy16633 421 VNEYLMTN 428 (540)
Q Consensus 421 i~~~~~~~ 428 (540)
++++++..
T Consensus 391 i~~~~~~~ 398 (410)
T 2j0s_A 391 IEQYYSTQ 398 (410)
T ss_dssp HHHHTTCC
T ss_pred HHHHhCCC
Confidence 88887654
No 4
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=2.8e-55 Score=456.58 Aligned_cols=356 Identities=30% Similarity=0.468 Sum_probs=317.8
Q ss_pred cCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcH
Q psy16633 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSK 101 (540)
Q Consensus 22 ~~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~ 101 (540)
+++|++.+.++|.++||.+|+++|+++++.+++|+++++.+|||||||++|++|++..+.. ...+.++||++||+
T Consensus 25 ~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~-----~~~~~~~lil~P~~ 99 (400)
T 1s2m_A 25 DFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKP-----KLNKIQALIMVPTR 99 (400)
T ss_dssp GGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCT-----TSCSCCEEEECSSH
T ss_pred hcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhh-----ccCCccEEEEcCCH
Confidence 6889999999999999999999999999999999999999999999999999999987633 13567899999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccc
Q psy16633 102 ELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVF 181 (540)
Q Consensus 102 ~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~ 181 (540)
+|+.|+++.++.++... ++.+....|+.....+...+...++|+|+||+++.+++......+ .++++||+||||++.
T Consensus 100 ~L~~q~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~-~~~~~vIiDEaH~~~ 176 (400)
T 1s2m_A 100 ELALQTSQVVRTLGKHC--GISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADL-SDCSLFIMDEADKML 176 (400)
T ss_dssp HHHHHHHHHHHHHTTTT--TCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCC-TTCCEEEEESHHHHS
T ss_pred HHHHHHHHHHHHHhccc--CceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCccc-ccCCEEEEeCchHhh
Confidence 99999999999988765 567777788776655555556788999999999999988776666 889999999999999
Q ss_pred cCCcHHHHHHHHHhCCcccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcCcccHHHHHHHHHH
Q psy16633 182 SFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLK 261 (540)
Q Consensus 182 ~~~~~~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~ll~ 261 (540)
+.+|...+..+...+++..|+++||||++..+..+....+.+|..+..... .....+.+++..+....+...+..++.
T Consensus 177 ~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~l~~~~~ 254 (400)
T 1s2m_A 177 SRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE--LTLKGITQYYAFVEERQKLHCLNTLFS 254 (400)
T ss_dssp SHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS--CBCTTEEEEEEECCGGGHHHHHHHHHH
T ss_pred hhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc--cccCCceeEEEEechhhHHHHHHHHHh
Confidence 888899999999999888999999999999999988888888887765443 234567788888888888888888887
Q ss_pred hcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCccccccccccc
Q psy16633 262 LNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKR 341 (540)
Q Consensus 262 ~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~ 341 (540)
.. ..+++||||++++.++.++..|.+.|+.+..+||+++..+|..+++.|++|..+|||||+
T Consensus 255 ~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~----------------- 316 (400)
T 1s2m_A 255 KL-QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD----------------- 316 (400)
T ss_dssp HS-CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-----------------
T ss_pred hc-CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----------------
Confidence 54 467999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEEeccccccccccccchhhhhhhhhHHHHHH
Q psy16633 342 KRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDV 421 (540)
Q Consensus 342 ~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~i 421 (540)
++++|+|+|++++||+||+|.|..+|+||+||+||.|+.|.+++++++.+... ++.+
T Consensus 317 ------~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~-----------------~~~i 373 (400)
T 1s2m_A 317 ------LLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFN-----------------LYKI 373 (400)
T ss_dssp ------CSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHH-----------------HHHH
T ss_pred ------ccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHH-----------------HHHH
Confidence 99999999999999999999999999999999999999999999999888776 8888
Q ss_pred HHHHhhc
Q psy16633 422 NEYLMTN 428 (540)
Q Consensus 422 ~~~~~~~ 428 (540)
++.++..
T Consensus 374 ~~~~~~~ 380 (400)
T 1s2m_A 374 EQELGTE 380 (400)
T ss_dssp HHHHTCC
T ss_pred HHHhCCC
Confidence 8887665
No 5
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=1.4e-55 Score=460.69 Aligned_cols=357 Identities=29% Similarity=0.472 Sum_probs=301.0
Q ss_pred cCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcH
Q psy16633 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSK 101 (540)
Q Consensus 22 ~~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~ 101 (540)
++++++.+++++.++||..|+++|+++++.+++|+++++.||||||||++|++|+++.+.. ...+.++||++||+
T Consensus 44 ~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~-----~~~~~~~lil~P~~ 118 (414)
T 3eiq_A 44 DMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIEL-----DLKATQALVLAPTR 118 (414)
T ss_dssp GGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCT-----TSCSCCEEEECSSH
T ss_pred hCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhh-----cCCceeEEEEeChH
Confidence 5789999999999999999999999999999999999999999999999999999988643 13578899999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhh-CCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCcccc
Q psy16633 102 ELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLV-ERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLV 180 (540)
Q Consensus 102 ~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~-~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l 180 (540)
+|+.|+++.+..++... ...+....|+.....+...+. ..++|+|+||+++.+++......+ ..+++||+||||++
T Consensus 119 ~L~~q~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~-~~~~~vViDEah~~ 195 (414)
T 3eiq_A 119 ELAQQIQKVVMALGDYM--GASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSP-KYIKMFVLDEADEM 195 (414)
T ss_dssp HHHHHHHHHHHHHGGGS--CCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCS-TTCCEEEECSHHHH
T ss_pred HHHHHHHHHHHHHhccc--CceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccc-ccCcEEEEECHHHh
Confidence 99999999999998766 566677777766554444433 678999999999999998877766 88999999999999
Q ss_pred ccCCcHHHHHHHHHhCCcccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcC-cccHHHHHHHH
Q psy16633 181 FSFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQ-EDEKATILYTL 259 (540)
Q Consensus 181 ~~~~~~~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~-~~~k~~~l~~l 259 (540)
.++++...+..++..+++..|+++||||+++.+..+...++.+|..+....... ....+.+++..+. ...+...+..+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~ 274 (414)
T 3eiq_A 196 LSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEEL-TLEGIRQFYINVEREEWKLDTLCDL 274 (414)
T ss_dssp HHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCC-CTTSCCEEEEECSSSTTHHHHHHHH
T ss_pred hccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCcc-CCCCceEEEEEeChHHhHHHHHHHH
Confidence 999999999999999999999999999999999999999999998887765543 3345666666655 44588888888
Q ss_pred HHhcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCccccccccc
Q psy16633 260 LKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNR 339 (540)
Q Consensus 260 l~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~ 339 (540)
++.. ..+++||||++++.++.++..|.+.++.+..+||++++.+|..+++.|++|..+|||||+
T Consensus 275 ~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~--------------- 338 (414)
T 3eiq_A 275 YETL-TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTD--------------- 338 (414)
T ss_dssp HHSS-CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECS---------------
T ss_pred HHhC-CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECC---------------
Confidence 7754 567999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEEeccccccccccccchhhhhhhhhHHHH
Q psy16633 340 KRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMN 419 (540)
Q Consensus 340 ~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 419 (540)
++++|+|+|++++||+||+|.|..+|+||+||+||.|+.|.+++|+++.+... ++
T Consensus 339 --------~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~-----------------~~ 393 (414)
T 3eiq_A 339 --------LLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRT-----------------LR 393 (414)
T ss_dssp --------SCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHH-----------------HH
T ss_pred --------ccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHH-----------------HH
Confidence 99999999999999999999999999999999999999999999999888776 78
Q ss_pred HHHHHHhhc
Q psy16633 420 DVNEYLMTN 428 (540)
Q Consensus 420 ~i~~~~~~~ 428 (540)
.+++.++..
T Consensus 394 ~~~~~~~~~ 402 (414)
T 3eiq_A 394 DIETFYNTS 402 (414)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHHcCC
Confidence 888876654
No 6
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=9e-55 Score=451.13 Aligned_cols=345 Identities=27% Similarity=0.452 Sum_probs=308.2
Q ss_pred cCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcH
Q psy16633 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSK 101 (540)
Q Consensus 22 ~~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~ 101 (540)
+++|++.++++|.++||..|+|+|.++++.+++|+++++.+|||+|||++|++|+++.+.. ...+.++||++||+
T Consensus 12 ~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~-----~~~~~~~lil~P~~ 86 (391)
T 1xti_A 12 DFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP-----VTGQVSVLVMCHTR 86 (391)
T ss_dssp GGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCC-----CTTCCCEEEECSCH
T ss_pred hcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcc-----cCCCeeEEEECCCH
Confidence 5789999999999999999999999999999999999999999999999999999987632 13467999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhh-CCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCcccc
Q psy16633 102 ELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLV-ERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLV 180 (540)
Q Consensus 102 ~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~-~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l 180 (540)
+|+.|+++.+..+.... .++.+..+.|+.....+...+. ..++|+|+||+++.+++......+ ..+++||+||||++
T Consensus 87 ~L~~q~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~-~~~~~vViDEaH~~ 164 (391)
T 1xti_A 87 ELAFQISKEYERFSKYM-PNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNL-KHIKHFILDECDKM 164 (391)
T ss_dssp HHHHHHHHHHHHHTTTC-TTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCC-TTCSEEEECSHHHH
T ss_pred HHHHHHHHHHHHHHhhC-CCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccc-cccCEEEEeCHHHH
Confidence 99999999999987654 2577788888776555544443 458999999999999998877666 89999999999999
Q ss_pred ccC-CcHHHHHHHHHhCCcccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcCcccHHHHHHHH
Q psy16633 181 FSF-GYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTL 259 (540)
Q Consensus 181 ~~~-~~~~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~l 259 (540)
.++ ++...+..++...+...|++++|||+++.+..+...++.+|..+............+.+++..+....+...+..+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 244 (391)
T 1xti_A 165 LEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDL 244 (391)
T ss_dssp TSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHHHH
T ss_pred hhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHHHHHH
Confidence 885 7888889999999889999999999999999999999999988887765545556788888888888898888888
Q ss_pred HHhcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCccccccccc
Q psy16633 260 LKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNR 339 (540)
Q Consensus 260 l~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~ 339 (540)
++.. ..+++||||++++.++.++..|.+.|+.+..+||++++.+|..+++.|++|..+|||||+
T Consensus 245 l~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~--------------- 308 (391)
T 1xti_A 245 LDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN--------------- 308 (391)
T ss_dssp HHHS-CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESC---------------
T ss_pred HHhc-CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECC---------------
Confidence 8754 567999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEEecccc
Q psy16633 340 KRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLRE 397 (540)
Q Consensus 340 ~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e 397 (540)
++++|+|+|++++||+||+|.|..+|+||+||+||.|+.|.+++++++.+
T Consensus 309 --------~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~ 358 (391)
T 1xti_A 309 --------LFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 358 (391)
T ss_dssp --------CCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHH
T ss_pred --------hhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccc
Confidence 99999999999999999999999999999999999999999999998664
No 7
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=2.1e-54 Score=451.30 Aligned_cols=355 Identities=27% Similarity=0.444 Sum_probs=304.9
Q ss_pred cCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcC
Q psy16633 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQN--KDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSP 99 (540)
Q Consensus 22 ~~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~g--kd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~P 99 (540)
+++|++.+++++.++||..|+++|.++++.+++| +++++.||||||||++|++|+++.+.. ...+.++||++|
T Consensus 29 ~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~-----~~~~~~~lil~P 103 (412)
T 3fht_A 29 ELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP-----ANKYPQCLCLSP 103 (412)
T ss_dssp GGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCT-----TSCSCCEEEECS
T ss_pred hCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhh-----cCCCCCEEEECC
Confidence 5789999999999999999999999999999997 899999999999999999999988743 235668999999
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCc-CCccCCccEEEEcCcc
Q psy16633 100 SKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKT-LDLKSSLEIVIIDEAD 178 (540)
Q Consensus 100 t~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~-~~~~~~l~~lViDEah 178 (540)
|++|+.|+++.++.+..... .+.+....++....... ...++|+|+||+++.+++.+.. ..+ .++++||+||||
T Consensus 104 ~~~L~~q~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~ivv~T~~~l~~~~~~~~~~~~-~~~~~iViDEah 178 (412)
T 3fht_A 104 TYELALQTGKVIEQMGKFYP-ELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDP-KKIKVFVLDEAD 178 (412)
T ss_dssp SHHHHHHHHHHHHHHTTTST-TCCEEEECTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCSSCG-GGCCEEEEETHH
T ss_pred CHHHHHHHHHHHHHHHhhcc-cceEEEeecCcchhhhh---cCCCCEEEECchHHHHHHHhcCCcCh-hhCcEEEEeCHH
Confidence 99999999999999876542 45666666654433222 3467999999999999997643 444 889999999999
Q ss_pred cccc-CCcHHHHHHHHHhCCcccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcC-cccHHHHH
Q psy16633 179 LVFS-FGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQ-EDEKATIL 256 (540)
Q Consensus 179 ~l~~-~~~~~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~-~~~k~~~l 256 (540)
++.+ .++...+..+...++...|++++|||+++.+..+....+.+|..+....... ....+.+++..+. ...+...+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l 257 (412)
T 3fht_A 179 VMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEE-TLDTIKQYYVLCSSRDEKFQAL 257 (412)
T ss_dssp HHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGS-SCTTEEEEEEECSSHHHHHHHH
T ss_pred HHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccc-cccCceEEEEEcCChHHHHHHH
Confidence 9887 6888899999999999999999999999999999999999999887765543 3455666666654 45677777
Q ss_pred HHHHHhcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccc
Q psy16633 257 YTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINST 336 (540)
Q Consensus 257 ~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~ 336 (540)
..++... ..+++||||++++.|+.++..|.+.++.+..+||+|++.+|..+++.|++|..+|||||+
T Consensus 258 ~~~~~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------------ 324 (412)
T 3fht_A 258 CNLYGAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN------------ 324 (412)
T ss_dssp HHHHHHH-SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG------------
T ss_pred HHHHhhc-CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC------------
Confidence 7777643 467999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCccccccccCCCCCcCEEEeCCCCC------CcccchhccccccCCCCCceEEEEecccc-ccccccccchhh
Q psy16633 337 NNRKRKRDKESGVSRGIDFQFVSNVINFDFPL------DIQCYIHRAGRTARGKNQGTALSFVSLRE-QDLMNDGTALSF 409 (540)
Q Consensus 337 ~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~------s~~~yiqr~GRagR~g~~g~~i~~~~~~e-~~~~~~~~~~~~ 409 (540)
++++|+|+|++++||+||+|. +..+|+||+||+||.|+.|.+++++.+.+ ...
T Consensus 325 -----------~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~--------- 384 (412)
T 3fht_A 325 -----------VCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNI--------- 384 (412)
T ss_dssp -----------GGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHH---------
T ss_pred -----------ccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHH---------
Confidence 999999999999999999994 67899999999999999999999998654 444
Q ss_pred hhhhhhHHHHHHHHHHhhc
Q psy16633 410 VSLREQDLMNDVNEYLMTN 428 (540)
Q Consensus 410 ~~~~~~~~~~~i~~~~~~~ 428 (540)
++.+++.++..
T Consensus 385 --------~~~i~~~~~~~ 395 (412)
T 3fht_A 385 --------LNRIQEHFNKK 395 (412)
T ss_dssp --------HHHHHHHHTCC
T ss_pred --------HHHHHHHHCCc
Confidence 78888887654
No 8
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=8.7e-54 Score=439.33 Aligned_cols=350 Identities=29% Similarity=0.455 Sum_probs=311.2
Q ss_pred cCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcC-CcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCc
Q psy16633 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQN-KDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPS 100 (540)
Q Consensus 22 ~~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~g-kd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt 100 (540)
+++|++.+.++|.++||..|+++|+++++.+++| +++++.+|||||||++|++|+++.+.. ..+.++||++|+
T Consensus 10 ~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~------~~~~~~lil~P~ 83 (367)
T 1hv8_A 10 ELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE------NNGIEAIILTPT 83 (367)
T ss_dssp GSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS------SSSCCEEEECSC
T ss_pred hcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc------cCCCcEEEEcCC
Confidence 5789999999999999999999999999999998 699999999999999999999887532 357899999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCcccc
Q psy16633 101 KELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLV 180 (540)
Q Consensus 101 ~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l 180 (540)
++|+.|+++.+..++... .+.+..+.|+.....+...+ ..++|+|+||+++.+.+......+ .+++++|+||||.+
T Consensus 84 ~~L~~q~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~-~~~~iiv~T~~~l~~~~~~~~~~~-~~~~~iIiDEah~~ 159 (367)
T 1hv8_A 84 RELAIQVADEIESLKGNK--NLKIAKIYGGKAIYPQIKAL-KNANIVVGTPGRILDHINRGTLNL-KNVKYFILDEADEM 159 (367)
T ss_dssp HHHHHHHHHHHHHHHCSS--CCCEEEECTTSCHHHHHHHH-HTCSEEEECHHHHHHHHHTTCSCT-TSCCEEEEETHHHH
T ss_pred HHHHHHHHHHHHHHhCCC--CceEEEEECCcchHHHHhhc-CCCCEEEecHHHHHHHHHcCCccc-ccCCEEEEeCchHh
Confidence 999999999999987654 56777777776655444444 378999999999999998877666 88999999999999
Q ss_pred ccCCcHHHHHHHHHhCCcccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcCcccHHHHHHHHH
Q psy16633 181 FSFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLL 260 (540)
Q Consensus 181 ~~~~~~~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~ll 260 (540)
.++++...+..++..+++..+++++|||++.........++.++..+..... ..+.+.+..+...++...+..++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~l 234 (367)
T 1hv8_A 160 LNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKIN-----ANIEQSYVEVNENERFEALCRLL 234 (367)
T ss_dssp HTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCSS-----SSSEEEEEECCGGGHHHHHHHHH
T ss_pred hhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecCC-----CCceEEEEEeChHHHHHHHHHHH
Confidence 9999999999999999889999999999999998888888888776655432 34667778888888888888887
Q ss_pred HhcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccccccc
Q psy16633 261 KLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRK 340 (540)
Q Consensus 261 ~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~ 340 (540)
+ ...+++||||++++.++.++..|++.|+.+..+||+++..+|..+++.|++|..+|||||+
T Consensus 235 ~--~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~---------------- 296 (367)
T 1hv8_A 235 K--NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD---------------- 296 (367)
T ss_dssp C--STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT----------------
T ss_pred h--cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC----------------
Confidence 6 3567999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEEeccccccccccccchhhhhhhhhHHHHH
Q psy16633 341 RKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMND 420 (540)
Q Consensus 341 ~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 420 (540)
++++|+|+|++++||++|+|.|..+|+||+||+||.|++|.+++++++.+... ++.
T Consensus 297 -------~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~-----------------~~~ 352 (367)
T 1hv8_A 297 -------VMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKK-----------------LRY 352 (367)
T ss_dssp -------THHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHH-----------------HHH
T ss_pred -------hhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHH-----------------HHH
Confidence 99999999999999999999999999999999999999999999999888776 888
Q ss_pred HHHHHhhc
Q psy16633 421 VNEYLMTN 428 (540)
Q Consensus 421 i~~~~~~~ 428 (540)
+++.++.+
T Consensus 353 i~~~~~~~ 360 (367)
T 1hv8_A 353 IERAMKLK 360 (367)
T ss_dssp HHHHHTCC
T ss_pred HHHHhCCC
Confidence 88887655
No 9
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=3e-54 Score=470.00 Aligned_cols=354 Identities=26% Similarity=0.390 Sum_probs=294.5
Q ss_pred CCCCHHHHHHHHHCCCCCChHHHHHHHHHHh--cCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCc
Q psy16633 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLIL--QNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPS 100 (540)
Q Consensus 23 ~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il--~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt 100 (540)
..|++.+++++.++||..|||+|.++|+.++ .|+|+++.||||||||++|++|+++.+...+. ....+.++||++||
T Consensus 26 ~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~-~~~~~~~~lvl~Pt 104 (579)
T 3sqw_A 26 GVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF-DSQYMVKAVIVAPT 104 (579)
T ss_dssp TSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT-SSTTSCCEEEECSS
T ss_pred CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccc-cccCCCeEEEEcch
Confidence 3489999999999999999999999999999 78899999999999999999999999876432 12346799999999
Q ss_pred HHHHHHHHHHHHHHHhhc--CCCceEEEeecCcccccchhhh-hCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCc
Q psy16633 101 KELCNQLHKNIQELTMKC--SRDVKCVDISEQVDVSVQEPLL-VERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEA 177 (540)
Q Consensus 101 ~~La~q~~~~l~~l~~~~--~~~i~~~~~~~~~~~~~~~~~l-~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEa 177 (540)
++|+.|+++.+..++... ...+.+..+.|+.....+...+ ..+++|+|+||++|.+++.......+..+++||||||
T Consensus 105 r~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEa 184 (579)
T 3sqw_A 105 RDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEA 184 (579)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETH
T ss_pred HHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEECh
Confidence 999999999999987532 1245666777776655554444 3479999999999999987753333388999999999
Q ss_pred cccccCCcHHHHHHHHHhCCc-------ccceeeEeeeccHHHHHHHHHhcCCCeEEEecCC---CCCCCCCeEEEEEEc
Q psy16633 178 DLVFSFGYEDDMKAVLKFLPK-------LYQAILASATLSEDVLSLKHLILRNPVILKLEEP---AIAPVSQLAHYHILA 247 (540)
Q Consensus 178 h~l~~~~~~~~l~~i~~~l~~-------~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~---~~~~~~~l~~~~~~~ 247 (540)
|++++++|..++..++..++. .+|+++||||+++.+..+...++.+|..+.+... .......+.+.+...
T Consensus 185 h~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 264 (579)
T 3sqw_A 185 DRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVIS 264 (579)
T ss_dssp HHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEE
T ss_pred HHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEe
Confidence 999999999999998877653 5699999999999999999989998877665432 122334456665555
Q ss_pred Ccc-c-HHHHH---HHHHHhcccCCcEEEEecChhhHHHHHHHHHhC---CCceEEeCCCCCHHHHHHHHHHHhcCCccE
Q psy16633 248 QED-E-KATIL---YTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQF---KISTCVLNSELPAKARCHAVYQFNQGLYDV 319 (540)
Q Consensus 248 ~~~-~-k~~~l---~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~---~~~~~~l~~~l~~~~r~~i~~~F~~g~~~i 319 (540)
... . ....+ ...+......+++||||+++..|+.++..|.+. ++.+..+||+|++.+|..+++.|++|..+|
T Consensus 265 ~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~v 344 (579)
T 3sqw_A 265 EKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGI 344 (579)
T ss_dssp SSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEE
T ss_pred cchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeE
Confidence 432 2 22223 223333345679999999999999999999886 899999999999999999999999999999
Q ss_pred EEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEEecccccc
Q psy16633 320 IIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQD 399 (540)
Q Consensus 320 LIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e~~ 399 (540)
||||+ ++++|||+|+|++||+||+|.+..+|+||+|||||.|+.|.|++|+.+.+..
T Consensus 345 LVaT~-----------------------~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~ 401 (579)
T 3sqw_A 345 LVCTD-----------------------VGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELP 401 (579)
T ss_dssp EEECG-----------------------GGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHH
T ss_pred EEEcc-----------------------hhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHH
Confidence 99999 9999999999999999999999999999999999999999999999998877
Q ss_pred c
Q psy16633 400 L 400 (540)
Q Consensus 400 ~ 400 (540)
.
T Consensus 402 ~ 402 (579)
T 3sqw_A 402 F 402 (579)
T ss_dssp H
T ss_pred H
Confidence 6
No 10
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=6.7e-54 Score=444.60 Aligned_cols=339 Identities=30% Similarity=0.461 Sum_probs=295.8
Q ss_pred cCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcC
Q psy16633 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQN--KDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSP 99 (540)
Q Consensus 22 ~~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~g--kd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~P 99 (540)
+++|++.+++++.++||..|+++|.++++.+++| +++++.||||||||++|++|++..+.. ...+.++||++|
T Consensus 9 ~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~-----~~~~~~~lil~P 83 (395)
T 3pey_A 9 ELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNP-----EDASPQAICLAP 83 (395)
T ss_dssp TSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCT-----TCCSCCEEEECS
T ss_pred hCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhcc-----CCCCccEEEECC
Confidence 5889999999999999999999999999999998 899999999999999999999987643 235779999999
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccc
Q psy16633 100 SKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADL 179 (540)
Q Consensus 100 t~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~ 179 (540)
|++|+.|+++.++.++... .+.+....++...... ...++|+|+||+++.+.+......+ .++++||+||||+
T Consensus 84 ~~~L~~q~~~~~~~~~~~~--~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~~~~~~-~~~~~iIiDEah~ 156 (395)
T 3pey_A 84 SRELARQTLEVVQEMGKFT--KITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQL-QKIKIFVLDEADN 156 (395)
T ss_dssp SHHHHHHHHHHHHHHTTTS--CCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHTTCBCC-TTCCEEEEETHHH
T ss_pred CHHHHHHHHHHHHHHhccc--CeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHcCCccc-ccCCEEEEEChhh
Confidence 9999999999999988665 4555555555432221 2478999999999999998876666 8999999999999
Q ss_pred ccc-CCcHHHHHHHHHhCCcccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEc-CcccHHHHHH
Q psy16633 180 VFS-FGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILA-QEDEKATILY 257 (540)
Q Consensus 180 l~~-~~~~~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~-~~~~k~~~l~ 257 (540)
+.+ .++...+..+...+++..|++++|||+++.+..+....+.++..+....... ....+.+.+..+ ....+...+.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~ 235 (395)
T 3pey_A 157 MLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEV-NVDAIKQLYMDCKNEADKFDVLT 235 (395)
T ss_dssp HHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGC-SCTTEEEEEEECSSHHHHHHHHH
T ss_pred hcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEcccccc-ccccccEEEEEcCchHHHHHHHH
Confidence 887 6888899999999999999999999999999999999999988877665443 334566666555 4566777777
Q ss_pred HHHHhcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCccccccc
Q psy16633 258 TLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTN 337 (540)
Q Consensus 258 ~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~ 337 (540)
.++... ..+++||||++++.|+.++..|.+.++.+..+||++++.+|..+++.|++|..+|||||+
T Consensus 236 ~~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------------- 301 (395)
T 3pey_A 236 ELYGLM-TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN------------- 301 (395)
T ss_dssp HHHTTT-TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-------------
T ss_pred HHHHhc-cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-------------
Confidence 777643 567999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCccccccccCCCCCcCEEEeCCCCC------CcccchhccccccCCCCCceEEEEecccc
Q psy16633 338 NRKRKRDKESGVSRGIDFQFVSNVINFDFPL------DIQCYIHRAGRTARGKNQGTALSFVSLRE 397 (540)
Q Consensus 338 ~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~------s~~~yiqr~GRagR~g~~g~~i~~~~~~e 397 (540)
++++|+|+|++++||+||+|. |..+|+||+||+||.|+.|.+++++...+
T Consensus 302 ----------~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 357 (395)
T 3pey_A 302 ----------VLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKN 357 (395)
T ss_dssp ----------GGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHH
T ss_pred ----------hhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechH
Confidence 999999999999999999998 99999999999999999999999998654
No 11
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=9.5e-54 Score=465.08 Aligned_cols=353 Identities=26% Similarity=0.398 Sum_probs=292.8
Q ss_pred CCCHHHHHHHHHCCCCCChHHHHHHHHHHh--cCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcH
Q psy16633 24 TLFCIPLQAIAKLGWLEPTLIQERAIPLIL--QNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSK 101 (540)
Q Consensus 24 ~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il--~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~ 101 (540)
.|++.+++++.++||..|||+|.++|+.++ .|+|+++.||||||||++|++|+++.+...+. ....+.++||++||+
T Consensus 78 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~-~~~~~~~~lil~Ptr 156 (563)
T 3i5x_A 78 VLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF-DSQYMVKAVIVAPTR 156 (563)
T ss_dssp SSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT-SSTTSCCEEEECSSH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccc-cccCCeeEEEEcCcH
Confidence 399999999999999999999999999999 67899999999999999999999999977432 123457899999999
Q ss_pred HHHHHHHHHHHHHHhhc--CCCceEEEeecCcccccchhhh-hCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCcc
Q psy16633 102 ELCNQLHKNIQELTMKC--SRDVKCVDISEQVDVSVQEPLL-VERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEAD 178 (540)
Q Consensus 102 ~La~q~~~~l~~l~~~~--~~~i~~~~~~~~~~~~~~~~~l-~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah 178 (540)
+|+.|+++.++.+.... .....+..+.|+.....+...+ ...++|+|+||+++.+++.+.....++.+++|||||||
T Consensus 157 ~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah 236 (563)
T 3i5x_A 157 DLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEAD 236 (563)
T ss_dssp HHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHH
T ss_pred HHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHH
Confidence 99999999999986532 1235566677776655444433 45899999999999999877533333889999999999
Q ss_pred ccccCCcHHHHHHHHHhCCc-------ccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCC---CCCCCCeEEEEEEcC
Q psy16633 179 LVFSFGYEDDMKAVLKFLPK-------LYQAILASATLSEDVLSLKHLILRNPVILKLEEPA---IAPVSQLAHYHILAQ 248 (540)
Q Consensus 179 ~l~~~~~~~~l~~i~~~l~~-------~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~---~~~~~~l~~~~~~~~ 248 (540)
++++++|...+..+...++. .+|+++||||+++.+..+...++.+|..+.+.... ......+.+.+....
T Consensus 237 ~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (563)
T 3i5x_A 237 RLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISE 316 (563)
T ss_dssp HHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEES
T ss_pred HHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECc
Confidence 99999999999998877643 57899999999999999999899988776654321 223344556655554
Q ss_pred cc-cH-HHHH---HHHHHhcccCCcEEEEecChhhHHHHHHHHHhC---CCceEEeCCCCCHHHHHHHHHHHhcCCccEE
Q psy16633 249 ED-EK-ATIL---YTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQF---KISTCVLNSELPAKARCHAVYQFNQGLYDVI 320 (540)
Q Consensus 249 ~~-~k-~~~l---~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~---~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iL 320 (540)
.. .+ ...+ ...+......+++||||+++..|+.++..|.+. ++.+..+||+|++.+|..+++.|++|..+||
T Consensus 317 ~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vL 396 (563)
T 3i5x_A 317 KFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGIL 396 (563)
T ss_dssp STTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEE
T ss_pred hhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEE
Confidence 32 22 2222 222333345679999999999999999999886 8999999999999999999999999999999
Q ss_pred EeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEEeccccccc
Q psy16633 321 IASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDL 400 (540)
Q Consensus 321 IaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e~~~ 400 (540)
|||+ ++++|||+|+|++||+||+|.|..+|+||+|||||.|+.|.+++|+.+.+...
T Consensus 397 vaT~-----------------------~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~ 453 (563)
T 3i5x_A 397 VCTD-----------------------VGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPF 453 (563)
T ss_dssp EECG-----------------------GGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHH
T ss_pred EEcc-----------------------hhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHH
Confidence 9999 99999999999999999999999999999999999999999999999888776
No 12
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=1.9e-55 Score=469.13 Aligned_cols=344 Identities=27% Similarity=0.442 Sum_probs=170.4
Q ss_pred cCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcC
Q psy16633 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQN--KDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSP 99 (540)
Q Consensus 22 ~~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~g--kd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~P 99 (540)
+++|++.++++|.++||..||++|.+++|.+++| +++++.||||||||++|++|+++.+.. ...++++||++|
T Consensus 96 ~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~-----~~~~~~~lil~P 170 (479)
T 3fmp_B 96 ELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP-----ANKYPQCLCLSP 170 (479)
T ss_dssp GGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCT-----TSCSCCEEEECS
T ss_pred HcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhh-----cCCCCcEEEEeC
Confidence 6789999999999999999999999999999997 899999999999999999999987633 234568999999
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCc-CCccCCccEEEEcCcc
Q psy16633 100 SKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKT-LDLKSSLEIVIIDEAD 178 (540)
Q Consensus 100 t~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~-~~~~~~l~~lViDEah 178 (540)
|++|+.|+++.+..+..... .+.+....++....... ...++|+|+||+++++++.+.. +.+ .++++|||||||
T Consensus 171 t~~La~Q~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~Ivv~Tp~~l~~~l~~~~~~~~-~~~~~iViDEah 245 (479)
T 3fmp_B 171 TYELALQTGKVIEQMGKFYP-ELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDP-KKIKVFVLDEAD 245 (479)
T ss_dssp SHHHHHHHHHHHHHHHTTST-TCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCCCCG-GGCCEEEECCHH
T ss_pred hHHHHHHHHHHHHHHHhhCC-CceEEEEeCCccccccc---cCCCCEEEECchHHHHHHHhcCCcCc-ccCCEEEEECHH
Confidence 99999999999999887542 45555555554433221 2467999999999999997644 444 899999999999
Q ss_pred cccc-CCcHHHHHHHHHhCCcccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcC-cccHHHHH
Q psy16633 179 LVFS-FGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQ-EDEKATIL 256 (540)
Q Consensus 179 ~l~~-~~~~~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~-~~~k~~~l 256 (540)
++.+ .++...+..+...++..+|++++|||++..+..+...++.+|..+.+..... ....+.++++.+. ...+...+
T Consensus 246 ~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l 324 (479)
T 3fmp_B 246 VMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEE-TLDTIKQYYVLCSSRDEKFQAL 324 (479)
T ss_dssp HHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC---------------------------
T ss_pred HHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEecccccc-CcCCceEEEEEeCCHHHHHHHH
Confidence 9987 6888889999999999999999999999999999999999999888776543 3345556665554 35666677
Q ss_pred HHHHHhcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccc
Q psy16633 257 YTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINST 336 (540)
Q Consensus 257 ~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~ 336 (540)
..++... ..+++||||+++..|..++..|...++.+..+||++++.+|..+++.|++|..+|||||+
T Consensus 325 ~~~~~~~-~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~------------ 391 (479)
T 3fmp_B 325 CNLYGAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN------------ 391 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhhc-cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcc------------
Confidence 7666543 456999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCccccccccCCCCCcCEEEeCCCC------CCcccchhccccccCCCCCceEEEEecccc-ccc
Q psy16633 337 NNRKRKRDKESGVSRGIDFQFVSNVINFDFP------LDIQCYIHRAGRTARGKNQGTALSFVSLRE-QDL 400 (540)
Q Consensus 337 ~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p------~s~~~yiqr~GRagR~g~~g~~i~~~~~~e-~~~ 400 (540)
++++|+|+|++++||+||+| .+..+|+||+|||||.|+.|.+++|+.+.+ ...
T Consensus 392 -----------~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~ 451 (479)
T 3fmp_B 392 -----------VCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNI 451 (479)
T ss_dssp -----------------------------------------------------------------------
T ss_pred -----------ccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHH
Confidence 99999999999999999999 467899999999999999999999998665 444
No 13
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=9.3e-55 Score=451.31 Aligned_cols=345 Identities=31% Similarity=0.496 Sum_probs=177.4
Q ss_pred cCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcH
Q psy16633 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSK 101 (540)
Q Consensus 22 ~~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~ 101 (540)
+++|++.+++++..+||..|+++|+++++.+++|+++++.+|||+|||++|++|+++.+.. ...+.++||++|++
T Consensus 25 ~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~-----~~~~~~~lil~P~~ 99 (394)
T 1fuu_A 25 DMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT-----SVKAPQALMLAPTR 99 (394)
T ss_dssp GGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCT-----TCCSCCEEEECSSH
T ss_pred hcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhc-----cCCCCCEEEEcCCH
Confidence 5789999999999999999999999999999999999999999999999999999988643 23577999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccc
Q psy16633 102 ELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVF 181 (540)
Q Consensus 102 ~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~ 181 (540)
+|+.|+++.+..++... ++.+..+.|+.........+. .++|+|+||+++.+.+......+ .+++++|+||||++.
T Consensus 100 ~L~~q~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~-~~~~~vIiDEah~~~ 175 (394)
T 1fuu_A 100 ELALQIQKVVMALAFHM--DIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRT-DKIKMFILDEADEML 175 (394)
T ss_dssp HHHHHHHHHHHHHTTTS--CCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCC-TTCCEEEEETHHHHH
T ss_pred HHHHHHHHHHHHHhccC--CeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcch-hhCcEEEEEChHHhh
Confidence 99999999999987665 577777778766544443332 68999999999999998876665 889999999999999
Q ss_pred cCCcHHHHHHHHHhCCcccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcCcc-cHHHHHHHHH
Q psy16633 182 SFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQED-EKATILYTLL 260 (540)
Q Consensus 182 ~~~~~~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~~-~k~~~l~~ll 260 (540)
++++...+..++..+++..|+++||||+++.+..+...++.+|..+....... ....+.+++..+... .+...+..++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~ 254 (394)
T 1fuu_A 176 SSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDEL-TLEGIKQFYVNVEEEEYKYECLTDLY 254 (394)
T ss_dssp HTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC------------------------------
T ss_pred CCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccc-cCCCceEEEEEcCchhhHHHHHHHHH
Confidence 99999999999999999999999999999999988888999998877665432 223445555544433 3666666666
Q ss_pred HhcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccccccc
Q psy16633 261 KLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRK 340 (540)
Q Consensus 261 ~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~ 340 (540)
+.. ..+++||||++++.++.++..|++.++.+..+||+++..+|..+++.|++|..+|||||+
T Consensus 255 ~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~---------------- 317 (394)
T 1fuu_A 255 DSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD---------------- 317 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hcC-CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECC----------------
Confidence 543 457999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEEeccccccc
Q psy16633 341 RKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDL 400 (540)
Q Consensus 341 ~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e~~~ 400 (540)
++++|+|+|++++||+||+|.|..+|+||+||+||.|+.|.+++++++.+...
T Consensus 318 -------~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~ 370 (394)
T 1fuu_A 318 -------LLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGA 370 (394)
T ss_dssp ------------------------------------------------------------
T ss_pred -------hhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHH
Confidence 99999999999999999999999999999999999999999999999888776
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.9e-51 Score=417.08 Aligned_cols=326 Identities=36% Similarity=0.539 Sum_probs=281.0
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHH
Q psy16633 25 LFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELC 104 (540)
Q Consensus 25 L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La 104 (540)
|++.|.+++.++||..|+++|+++++.+++|+++++.+|||+|||++|++|+++. +.++||++|+++|+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~-----------~~~~liv~P~~~L~ 69 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL-----------GMKSLVVTPTRELT 69 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH-----------TCCEEEECSSHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh-----------cCCEEEEeCCHHHH
Confidence 5789999999999999999999999999999999999999999999999998753 56899999999999
Q ss_pred HHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCC
Q psy16633 105 NQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFG 184 (540)
Q Consensus 105 ~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~ 184 (540)
.|+++.++.++... ++.+..+.|+.....+...+ ..++|+|+||+++.+.+......+ .+++++|+||||++.+++
T Consensus 70 ~q~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~i~v~T~~~l~~~~~~~~~~~-~~~~~iViDEah~~~~~~ 145 (337)
T 2z0m_A 70 RQVASHIRDIGRYM--DTKVAEVYGGMPYKAQINRV-RNADIVVATPGRLLDLWSKGVIDL-SSFEIVIIDEADLMFEMG 145 (337)
T ss_dssp HHHHHHHHHHTTTS--CCCEEEECTTSCHHHHHHHH-TTCSEEEECHHHHHHHHHTTSCCG-GGCSEEEEESHHHHHHTT
T ss_pred HHHHHHHHHHhhhc--CCcEEEEECCcchHHHHhhc-CCCCEEEECHHHHHHHHHcCCcch-hhCcEEEEEChHHhhccc
Confidence 99999999987665 56677777776655444443 358999999999999988876666 889999999999999999
Q ss_pred cHHHHHHHHHhCCcccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcCcccHHHHHHHHHHhcc
Q psy16633 185 YEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNL 264 (540)
Q Consensus 185 ~~~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~ll~~~~ 264 (540)
+...+..++...+...+++++|||+++.+......++.++..+... .....+.+.+..+....+... ..+.. .
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~--~~~~~-~ 218 (337)
T 2z0m_A 146 FIDDIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC----IGLANVEHKFVHVKDDWRSKV--QALRE-N 218 (337)
T ss_dssp CHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS----GGGGGEEEEEEECSSSSHHHH--HHHHT-C
T ss_pred cHHHHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc----cccCCceEEEEEeChHHHHHH--HHHHh-C
Confidence 9999999999999889999999999999988888888888766432 122345566666655444322 33332 3
Q ss_pred cCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccccccccccC
Q psy16633 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRD 344 (540)
Q Consensus 265 ~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~ 344 (540)
..+++||||++++.++.++..|. .+..+||+++..+|..+++.|++|..+|||||+
T Consensus 219 ~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-------------------- 274 (337)
T 2z0m_A 219 KDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTD-------------------- 274 (337)
T ss_dssp CCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECH--------------------
T ss_pred CCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcC--------------------
Confidence 56799999999999999988876 588999999999999999999999999999999
Q ss_pred ccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEEeccccccc
Q psy16633 345 KESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDL 400 (540)
Q Consensus 345 ~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e~~~ 400 (540)
++++|+|+|++++||+||+|.|..+|+||+||+||.|+.|.+++|+. .+...
T Consensus 275 ---~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~ 326 (337)
T 2z0m_A 275 ---VASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWL 326 (337)
T ss_dssp ---HHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHH
T ss_pred ---ccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHH
Confidence 99999999999999999999999999999999999999999999998 66555
No 15
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=1.1e-50 Score=439.39 Aligned_cols=333 Identities=16% Similarity=0.228 Sum_probs=268.0
Q ss_pred cCCCCHHHHHHHHH-CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCc
Q psy16633 22 TFTLFCIPLQAIAK-LGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPS 100 (540)
Q Consensus 22 ~~~L~~~i~~~l~~-~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt 100 (540)
+++|++.+.++|++ +||..|+|+|+++|+.+++|+|+++.+|||+|||++|++|++. .+.++||++|+
T Consensus 25 ~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~-----------~~g~~lVisP~ 93 (591)
T 2v1x_A 25 DFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALC-----------SDGFTLVICPL 93 (591)
T ss_dssp CSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHT-----------SSSEEEEECSC
T ss_pred cCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHH-----------cCCcEEEEeCH
Confidence 57899999999999 6999999999999999999999999999999999999999873 24689999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhh------hhCCCCEEEEChHHHH------HHHhcCcCCccCC
Q psy16633 101 KELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL------LVERPDIVVATPARAL------AHLKAKTLDLKSS 168 (540)
Q Consensus 101 ~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~------l~~~~~Ivv~Tp~~l~------~~l~~~~~~~~~~ 168 (540)
++|+.|+.+.+..+ ++.+..+.|+......... ....++|+|+||++|. +.+.. ...+ ..
T Consensus 94 ~~L~~q~~~~l~~~------gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~-~~~~-~~ 165 (591)
T 2v1x_A 94 ISLMEDQLMVLKQL------GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK-AYEA-RR 165 (591)
T ss_dssp HHHHHHHHHHHHHH------TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH-HHHT-TC
T ss_pred HHHHHHHHHHHHhc------CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh-hhhc-cC
Confidence 99999999999887 3566777777654433322 2457899999999874 23332 2223 68
Q ss_pred ccEEEEcCccccccCC--cHHHHHH---HHHhCCcccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEE
Q psy16633 169 LEIVIIDEADLVFSFG--YEDDMKA---VLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHY 243 (540)
Q Consensus 169 l~~lViDEah~l~~~~--~~~~l~~---i~~~l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~ 243 (540)
+++|||||||++.+|| |..++.. +....| ..+++++|||+++.+.......+..+....+.... ....+. +
T Consensus 166 i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~-~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~--~r~nl~-~ 241 (591)
T 2v1x_A 166 FTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFP-NASLIGLTATATNHVLTDAQKILCIEKCFTFTASF--NRPNLY-Y 241 (591)
T ss_dssp EEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCT-TSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCC--CCTTEE-E
T ss_pred CcEEEEECcccccccccccHHHHHHHHHHHHhCC-CCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCC--CCcccE-E
Confidence 9999999999999988 6655543 334444 57999999999998877666665544333332221 112232 2
Q ss_pred EEEcCc---ccHHHHHHHHHHhcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEE
Q psy16633 244 HILAQE---DEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVI 320 (540)
Q Consensus 244 ~~~~~~---~~k~~~l~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iL 320 (540)
.+.... .++...+..+++.....+++||||++++.++.++..|.+.|+.+..+||+|++.+|..+++.|.+|..+||
T Consensus 242 ~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~Vl 321 (591)
T 2v1x_A 242 EVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVV 321 (591)
T ss_dssp EEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEE
T ss_pred EEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEE
Confidence 222222 23444555555544456799999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEEeccccccc
Q psy16633 321 IASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDL 400 (540)
Q Consensus 321 IaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e~~~ 400 (540)
|||+ ++++|||+|+|++||+||+|.|.++|+||+|||||.|++|.|++|+.+.|...
T Consensus 322 VAT~-----------------------a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~ 378 (591)
T 2v1x_A 322 VATV-----------------------AFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFR 378 (591)
T ss_dssp EECT-----------------------TSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHH
T ss_pred EEec-----------------------hhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHH
Confidence 9999 99999999999999999999999999999999999999999999999877654
No 16
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.4e-51 Score=437.63 Aligned_cols=352 Identities=26% Similarity=0.399 Sum_probs=257.9
Q ss_pred CCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCc
Q psy16633 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQN--KDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPS 100 (540)
Q Consensus 23 ~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~g--kd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt 100 (540)
.++++.+++++.+.||..|+++|++|++.+++| +++++.||||||||++|++|+++.+... ..+.++||++|+
T Consensus 124 ~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~-----~~~~~vLvl~P~ 198 (508)
T 3fho_A 124 XXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDAS-----VPKPQAICLAPS 198 (508)
T ss_dssp ---------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTT-----CCSCCEEEECSC
T ss_pred cccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhC-----CCCceEEEEECc
Confidence 567889999999999999999999999999998 9999999999999999999999887432 346799999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCcccc
Q psy16633 101 KELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLV 180 (540)
Q Consensus 101 ~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l 180 (540)
++|+.|+++.++.++... .+.+....++..... ....++|+|+||+++.+.+......+ ..+++|||||||.+
T Consensus 199 ~~L~~Q~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~l~~~~~~~-~~~~lIIiDEaH~~ 271 (508)
T 3fho_A 199 RELARQIMDVVTEMGKYT--EVKTAFGIKDSVPKG----AKIDAQIVIGTPGTVMDLMKRRQLDA-RDIKVFVLDEADNM 271 (508)
T ss_dssp HHHHHHHHHHHHHHSTTS--SCCEEC--------------CCCCSEEEECHHHHHHHHHTTCSCC-TTCCEEEECCHHHH
T ss_pred HHHHHHHHHHHHHhCCcc--CeeEEEEeCCccccc----ccCCCCEEEECHHHHHHHHHcCCccc-cCCCEEEEechhhh
Confidence 999999999999987655 333333333322221 12368999999999999998877766 89999999999999
Q ss_pred cc-CCcHHHHHHHHHhCCcccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEc-CcccHHHHHHH
Q psy16633 181 FS-FGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILA-QEDEKATILYT 258 (540)
Q Consensus 181 ~~-~~~~~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~-~~~~k~~~l~~ 258 (540)
.+ .++...+..+...+++..|+++||||+++.+..+...++.++..+.+....... ..+.+.+..+ ....+...+..
T Consensus 272 ~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~k~~~l~~ 350 (508)
T 3fho_A 272 LDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSV-EGIKQLYMDCQSEEHKYNVLVE 350 (508)
T ss_dssp TTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC-----CCCCEEEEC--CHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCc-ccceEEEEECCchHHHHHHHHH
Confidence 87 689999999999999999999999999999999999999999887766554322 3344444444 45566777777
Q ss_pred HHHhcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccccc
Q psy16633 259 LLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNN 338 (540)
Q Consensus 259 ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~ 338 (540)
+++.. ..+++||||++++.|+.++..|.+.++.+..+||+++..+|..+++.|++|..+|||||+
T Consensus 351 ll~~~-~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~-------------- 415 (508)
T 3fho_A 351 LYGLL-TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTN-------------- 415 (508)
T ss_dssp HHC----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC--------------
T ss_pred HHHhc-CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCC--------------
Confidence 76643 567999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCccccccccCCCCCcCEEEeCCCC------CCcccchhccccccCCCCCceEEEEeccc-cccccccccchhhhh
Q psy16633 339 RKRKRDKESGVSRGIDFQFVSNVINFDFP------LDIQCYIHRAGRTARGKNQGTALSFVSLR-EQDLMNDGTALSFVS 411 (540)
Q Consensus 339 ~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p------~s~~~yiqr~GRagR~g~~g~~i~~~~~~-e~~~~~~~~~~~~~~ 411 (540)
++++|+|+|++++||++|+| .|..+|+||+||+||.|+.|.+++|+.+. +...
T Consensus 416 ---------~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~----------- 475 (508)
T 3fho_A 416 ---------VIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEE----------- 475 (508)
T ss_dssp --------------CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSS-----------
T ss_pred ---------hhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHH-----------
Confidence 99999999999999999999 78999999999999999999999999854 4444
Q ss_pred hhhhHHHHHHHHHHhhc
Q psy16633 412 LREQDLMNDVNEYLMTN 428 (540)
Q Consensus 412 ~~~~~~~~~i~~~~~~~ 428 (540)
+..++++++..
T Consensus 476 ------~~~i~~~~~~~ 486 (508)
T 3fho_A 476 ------MNAIQEYFQRP 486 (508)
T ss_dssp ------HHHHHHHSCCC
T ss_pred ------HHHHHHHHCCC
Confidence 77777775543
No 17
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=6.8e-49 Score=421.02 Aligned_cols=330 Identities=20% Similarity=0.251 Sum_probs=266.1
Q ss_pred cCCCCHHHHHHHHH-CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCc
Q psy16633 22 TFTLFCIPLQAIAK-LGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPS 100 (540)
Q Consensus 22 ~~~L~~~i~~~l~~-~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt 100 (540)
+++|++.+.+.|.+ +||..|+++|.++|+.+++|+|+++.+|||+|||++|++|++.. ...+||++|+
T Consensus 6 ~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~-----------~g~~lvi~P~ 74 (523)
T 1oyw_A 6 VLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL-----------NGLTVVVSPL 74 (523)
T ss_dssp CSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS-----------SSEEEEECSC
T ss_pred hCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh-----------CCCEEEECCh
Confidence 57889999999999 89999999999999999999999999999999999999998732 3579999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccc----hhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcC
Q psy16633 101 KELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQ----EPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDE 176 (540)
Q Consensus 101 ~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~----~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDE 176 (540)
++|+.|+.+.+..+ ++.+..+.++...... .....+.++|+|+||+++........+.. .++++|||||
T Consensus 75 ~aL~~q~~~~l~~~------gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~-~~~~~vViDE 147 (523)
T 1oyw_A 75 ISLMKDQVDQLQAN------GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAH-WNPVLLAVDE 147 (523)
T ss_dssp HHHHHHHHHHHHHT------TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTT-SCEEEEEESS
T ss_pred HHHHHHHHHHHHHc------CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhh-CCCCEEEEeC
Confidence 99999999998875 3555666666543332 22334678999999999853322222223 6789999999
Q ss_pred ccccccCC--cHHHHHH---HHHhCCcccceeeEeeeccHHHHHH-HH-HhcCCCeEEEecCCCCCCCCCeEEEEEEcCc
Q psy16633 177 ADLVFSFG--YEDDMKA---VLKFLPKLYQAILASATLSEDVLSL-KH-LILRNPVILKLEEPAIAPVSQLAHYHILAQE 249 (540)
Q Consensus 177 ah~l~~~~--~~~~l~~---i~~~l~~~~q~il~SATl~~~~~~~-~~-~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~ 249 (540)
||++.+|| |...+.. +...+| ..+++++|||+++.+... .. ..+.+|.+.... .. ...+. +.....
T Consensus 148 aH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~-~~---r~~l~--~~v~~~ 220 (523)
T 1oyw_A 148 AHCISQWGHDFRPEYAALGQLRQRFP-TLPFMALTATADDTTRQDIVRLLGLNDPLIQISS-FD---RPNIR--YMLMEK 220 (523)
T ss_dssp GGGGCTTSSCCCHHHHGGGGHHHHCT-TSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECC-CC---CTTEE--EEEEEC
T ss_pred ccccCcCCCccHHHHHHHHHHHHhCC-CCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCC-CC---CCceE--EEEEeC
Confidence 99999987 5555443 445555 478999999999887653 33 334566554322 11 12232 233334
Q ss_pred ccHHHHHHHHHHhcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccC
Q psy16633 250 DEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329 (540)
Q Consensus 250 ~~k~~~l~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~ 329 (540)
.++...+..+++.. ..+++||||++++.++.++..|.+.|+.+..+||+|++.+|..+++.|.+|..+|||||+
T Consensus 221 ~~~~~~l~~~l~~~-~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~----- 294 (523)
T 1oyw_A 221 FKPLDQLMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATV----- 294 (523)
T ss_dssp SSHHHHHHHHHHHT-TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECT-----
T ss_pred CCHHHHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec-----
Confidence 55666666666643 456999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccccccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEEeccccccc
Q psy16633 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDL 400 (540)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e~~~ 400 (540)
++++|||+|+|++||+||+|.|.++|+||+|||||.|.+|.+++++++.+...
T Consensus 295 ------------------a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~ 347 (523)
T 1oyw_A 295 ------------------AFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAW 347 (523)
T ss_dssp ------------------TSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHH
T ss_pred ------------------hhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHH
Confidence 99999999999999999999999999999999999999999999999877644
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=2.9e-49 Score=413.45 Aligned_cols=326 Identities=21% Similarity=0.290 Sum_probs=259.5
Q ss_pred HHHHHHHH-CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHH
Q psy16633 28 IPLQAIAK-LGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQ 106 (540)
Q Consensus 28 ~i~~~l~~-~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q 106 (540)
.+.+.+++ +|| .|||+|.++++.+++|+|+++.||||||||++|++|++..+ ..+.++||++||++|+.|
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~--------~~~~~~lil~Pt~~L~~q 79 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA--------RKGKKSALVFPTVTLVKQ 79 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH--------TTTCCEEEEESSHHHHHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh--------cCCCEEEEEECCHHHHHH
Confidence 45556665 477 89999999999999999999999999999999999988765 467899999999999999
Q ss_pred HHHHHHHHHhhcCCCceEEEeecCccc---ccchhhhhC-CCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCcccccc
Q psy16633 107 LHKNIQELTMKCSRDVKCVDISEQVDV---SVQEPLLVE-RPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFS 182 (540)
Q Consensus 107 ~~~~l~~l~~~~~~~i~~~~~~~~~~~---~~~~~~l~~-~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~ 182 (540)
+++.++.++. .++.+..+.|+... ..+...+.. .++|+|+||+++.+++.. ..+ .++++||+||||++.+
T Consensus 80 ~~~~~~~~~~---~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~-~~~~~iViDEaH~~~~ 153 (414)
T 3oiy_A 80 TLERLQKLAD---EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQ-KRFDFVFVDDVDAVLK 153 (414)
T ss_dssp HHHHHHHHCC---SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTT-CCCSEEEESCHHHHHH
T ss_pred HHHHHHHHcc---CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hcc-ccccEEEEeChHhhhh
Confidence 9999999865 36788889988776 333333434 499999999999888765 333 6899999999987654
Q ss_pred -----------CCcHHH-HHHHHHhCC-----------cccceeeEeee-ccHHHH-HHHHHhcCCCeEEEecCCCCCCC
Q psy16633 183 -----------FGYEDD-MKAVLKFLP-----------KLYQAILASAT-LSEDVL-SLKHLILRNPVILKLEEPAIAPV 237 (540)
Q Consensus 183 -----------~~~~~~-l~~i~~~l~-----------~~~q~il~SAT-l~~~~~-~~~~~~l~~p~~i~~~~~~~~~~ 237 (540)
++|... +..++..++ ...|++++||| .+..+. .+....+. +..... ....
T Consensus 154 ~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~-~~~~ 228 (414)
T 3oiy_A 154 ASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRL-VSVA 228 (414)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCC-CCCC
T ss_pred ccchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCcc-cccc
Confidence 667777 788888776 77899999999 555443 22222222 111111 1233
Q ss_pred CCeEEEEEEcCcccHHHHHHHHHHhcccCCcEEEEecChhhHHHHHHHHHhCCCceE-EeCCCCCHHHHHHHHHHHhcCC
Q psy16633 238 SQLAHYHILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTC-VLNSELPAKARCHAVYQFNQGL 316 (540)
Q Consensus 238 ~~l~~~~~~~~~~~k~~~l~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~-~l~~~l~~~~r~~i~~~F~~g~ 316 (540)
..+.+.+..+ ++...+..+++. .++++||||+++..|+.++..|.+.|+.+. .+||. +|. ++.|++|.
T Consensus 229 ~~i~~~~~~~---~~~~~l~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~ 297 (414)
T 3oiy_A 229 RNITHVRISS---RSKEKLVELLEI--FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGK 297 (414)
T ss_dssp CSEEEEEESS---CCHHHHHHHHHH--HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTS
T ss_pred ccchheeecc---CHHHHHHHHHHH--cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCC
Confidence 4566666655 345556666665 357999999999999999999999999998 89985 444 99999999
Q ss_pred ccEEEe----CCCCccCCcccccccccccccCccccccccCCCCC-cCEEEeCCCC--CCcccchhccccccCCC----C
Q psy16633 317 YDVIIA----SDEKALETPQINSTNNRKRKRDKESGVSRGIDFQF-VSNVINFDFP--LDIQCYIHRAGRTARGK----N 385 (540)
Q Consensus 317 ~~iLIa----T~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~-v~~Vi~~d~p--~s~~~yiqr~GRagR~g----~ 385 (540)
++|||| |+ ++++|+|+|+ |++||+||+| .|..+|+||+|||||.| .
T Consensus 298 ~~vLvat~s~T~-----------------------~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~ 354 (414)
T 3oiy_A 298 INILIGVQAYYG-----------------------KLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLV 354 (414)
T ss_dssp CSEEEEECCTTC-----------------------CCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEEC
T ss_pred CeEEEEecCcCc-----------------------hhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCc
Confidence 999999 99 9999999999 9999999999 99999999999999988 4
Q ss_pred CceEEEEeccccccccccccchhhhhhhhhHHHHHHHHHHh
Q psy16633 386 QGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLM 426 (540)
Q Consensus 386 ~g~~i~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 426 (540)
.|.+++|+ .+... ++.+++.++
T Consensus 355 ~g~~i~~~--~~~~~-----------------~~~l~~~~~ 376 (414)
T 3oiy_A 355 KGVSVIFE--EDEEI-----------------FESLKTRLL 376 (414)
T ss_dssp CEEEEEEC--CCHHH-----------------HHHHHHHHH
T ss_pred ceEEEEEE--ccHHH-----------------HHHHHHHhc
Confidence 79999998 44444 677777766
No 19
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-47 Score=439.86 Aligned_cols=326 Identities=19% Similarity=0.206 Sum_probs=257.4
Q ss_pred CCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHH
Q psy16633 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKE 102 (540)
Q Consensus 23 ~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~ 102 (540)
.++++.+...+...++-.||++|.+||+.+++|++++++||||||||++|.+|+++.+ ..+.++||++||++
T Consensus 167 ~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l--------~~g~rvlvl~Ptra 238 (1108)
T 3l9o_A 167 TPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSL--------KNKQRVIYTSPIKA 238 (1108)
T ss_dssp STTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHH--------HTTCEEEEEESSHH
T ss_pred CCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHH--------hcCCeEEEEcCcHH
Confidence 3455555555566666689999999999999999999999999999999999999887 24789999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCcccccc
Q psy16633 103 LCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFS 182 (540)
Q Consensus 103 La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~ 182 (540)
|+.|+++.+..++. .+..++|+.... ..++|+|+||++|.+++..+...+ .++++|||||||++.+
T Consensus 239 La~Q~~~~l~~~~~------~VglltGd~~~~-------~~~~IlV~Tpe~L~~~L~~~~~~l-~~l~lVVIDEaH~l~d 304 (1108)
T 3l9o_A 239 LSNQKYRELLAEFG------DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVM-REVAWVIFDEVHYMRD 304 (1108)
T ss_dssp HHHHHHHHHHHHTS------SEEEECSSCBCC-------CSCSEEEEEHHHHHHHHHHCSSHH-HHEEEEEEETGGGTTS
T ss_pred HHHHHHHHHHHHhC------CccEEeCccccC-------CCCCEEEeChHHHHHHHHcCcccc-ccCCEEEEhhhhhccc
Confidence 99999999998764 356677776533 568999999999999998876655 8899999999999999
Q ss_pred CCcHHHHHHHHHhCCcccceeeEeeeccHH--HHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcCc---------cc
Q psy16633 183 FGYEDDMKAVLKFLPKLYQAILASATLSED--VLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQE---------DE 251 (540)
Q Consensus 183 ~~~~~~l~~i~~~l~~~~q~il~SATl~~~--~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~---------~~ 251 (540)
++++..+..++..+++..|+++||||+++. +..+.......|..+....... ..+.++++.... ..
T Consensus 305 ~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp---~pl~~~~~~~~~~~~~~~vd~~~ 381 (1108)
T 3l9o_A 305 KERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRP---TPLQHYLFPAHGDGIYLVVDEKS 381 (1108)
T ss_dssp HHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCS---SCEEEEEEETTSSCCEEEEETTT
T ss_pred cchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCc---ccceEEEeecCCcceeeeecccc
Confidence 999999999999999999999999999875 4456666667776655443322 223343332110 00
Q ss_pred ----------------------------------------H---HHHHHHHHHh--cccCCcEEEEecChhhHHHHHHHH
Q psy16633 252 ----------------------------------------K---ATILYTLLKL--NLVQGKTIIFVNTVDKCYKLKLYL 286 (540)
Q Consensus 252 ----------------------------------------k---~~~l~~ll~~--~~~~~k~IIF~~s~~~~~~l~~~L 286 (540)
+ ...+..+++. ....+++||||+++..|+.++..|
T Consensus 382 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L 461 (1108)
T 3l9o_A 382 TFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKM 461 (1108)
T ss_dssp EECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHT
T ss_pred chhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHH
Confidence 0 1222222221 123569999999999999999988
Q ss_pred HhCCCc---------------------------------------eEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCc
Q psy16633 287 EQFKIS---------------------------------------TCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327 (540)
Q Consensus 287 ~~~~~~---------------------------------------~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~ 327 (540)
...++. ++.+||+|++..|..+++.|.+|.++|||||+
T Consensus 462 ~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~--- 538 (1108)
T 3l9o_A 462 SKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATE--- 538 (1108)
T ss_dssp CSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEES---
T ss_pred HhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECc---
Confidence 653322 78999999999999999999999999999999
Q ss_pred cCCcccccccccccccCccccccccCCCCCcCEEEeCCCCC--------CcccchhccccccCCC--CCceEEEEeccc
Q psy16633 328 LETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPL--------DIQCYIHRAGRTARGK--NQGTALSFVSLR 396 (540)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~--------s~~~yiqr~GRagR~g--~~g~~i~~~~~~ 396 (540)
++++|||+|++++||+++.|. |..+|+||+|||||.| ..|.+++++.+.
T Consensus 539 --------------------vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 539 --------------------TFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp --------------------CCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred --------------------HHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Confidence 999999999999999887643 5667999999999999 567777777654
No 20
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.2e-44 Score=403.85 Aligned_cols=331 Identities=18% Similarity=0.216 Sum_probs=259.5
Q ss_pred CCc-cCCCCHHHHHHHHHCCCCCChHHHHHHHHH-HhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEE
Q psy16633 19 LPF-TFTLFCIPLQAIAKLGWLEPTLIQERAIPL-ILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALV 96 (540)
Q Consensus 19 ~~~-~~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~-il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vli 96 (540)
++| +++|++++.+.+.+.||.+|+++|.++++. +.+|++++++||||||||+++.+|+++.+.. .+.+++|
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~-------~~~~il~ 80 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK-------NGGKAIY 80 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH-------SCSEEEE
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH-------CCCeEEE
Confidence 344 688999999999999999999999999999 7789999999999999999999999988754 3679999
Q ss_pred EcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcC
Q psy16633 97 LSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDE 176 (540)
Q Consensus 97 l~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDE 176 (540)
++|+++|+.|+++.++.+. .. ++.+..++|+...... .+ ..++|+|+||+++..++.+....+ +++++|||||
T Consensus 81 i~P~r~La~q~~~~~~~~~-~~--g~~v~~~~G~~~~~~~--~~-~~~~Iiv~Tpe~l~~~~~~~~~~l-~~~~~vIiDE 153 (715)
T 2va8_A 81 VTPLRALTNEKYLTFKDWE-LI--GFKVAMTSGDYDTDDA--WL-KNYDIIITTYEKLDSLWRHRPEWL-NEVNYFVLDE 153 (715)
T ss_dssp ECSCHHHHHHHHHHHGGGG-GG--TCCEEECCSCSSSCCG--GG-GGCSEEEECHHHHHHHHHHCCGGG-GGEEEEEECS
T ss_pred EeCcHHHHHHHHHHHHHhh-cC--CCEEEEEeCCCCCchh--hc-CCCCEEEEcHHHHHHHHhCChhHh-hccCEEEEec
Confidence 9999999999999996443 23 5677778887654432 22 478999999999999988765444 8999999999
Q ss_pred ccccccCCcHHHHHHHHHhCCcccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEE-----------E
Q psy16633 177 ADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYH-----------I 245 (540)
Q Consensus 177 ah~l~~~~~~~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~-----------~ 245 (540)
||.+.+.++...+..++..++ ..|+++||||+++. ..+...+ ..+. +..... + ..+..++ +
T Consensus 154 ~H~l~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n~-~~~~~~l-~~~~-~~~~~r--~--~~l~~~~~~~~~~~~~~~~ 225 (715)
T 2va8_A 154 LHYLNDPERGPVVESVTIRAK-RRNLLALSATISNY-KQIAKWL-GAEP-VATNWR--P--VPLIEGVIYPERKKKEYNV 225 (715)
T ss_dssp GGGGGCTTTHHHHHHHHHHHH-TSEEEEEESCCTTH-HHHHHHH-TCEE-EECCCC--S--SCEEEEEEEECSSTTEEEE
T ss_pred hhhcCCcccchHHHHHHHhcc-cCcEEEEcCCCCCH-HHHHHHh-CCCc-cCCCCC--C--CCceEEEEecCCcccceee
Confidence 999988888888888887776 68999999999853 3343332 2221 111110 0 0111111 1
Q ss_pred -EcC--------cccHHHHHHHHHHhcccCCcEEEEecChhhHHHHHHHHHhCC--------------------------
Q psy16633 246 -LAQ--------EDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFK-------------------------- 290 (540)
Q Consensus 246 -~~~--------~~~k~~~l~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~-------------------------- 290 (540)
..+ ...+...+...+. .++++||||++++.++.++..|.+..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 302 (715)
T 2va8_A 226 IFKDNTTKKVHGDDAIIAYTLDSLS---KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSD 302 (715)
T ss_dssp EETTSCEEEEESSSHHHHHHHHHHT---TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHH
T ss_pred ecCcchhhhcccchHHHHHHHHHHh---cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhcccc
Confidence 111 1333444444433 56899999999999999999998642
Q ss_pred ----------CceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccccccccccCccccccccCCCCCcCE
Q psy16633 291 ----------ISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSN 360 (540)
Q Consensus 291 ----------~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~ 360 (540)
.++..+||+|+..+|..+++.|.+|..+|||||+ ++++|||+|++++
T Consensus 303 ~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~-----------------------~l~~Gidip~~~~ 359 (715)
T 2va8_A 303 EKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATP-----------------------TLAAGVNLPARTV 359 (715)
T ss_dssp HHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECG-----------------------GGGGSSCCCBSEE
T ss_pred ccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEECh-----------------------HHhcccCCCceEE
Confidence 2589999999999999999999999999999999 9999999999999
Q ss_pred EEe----CC-------CCCCcccchhccccccCCC--CCceEEEEecccc
Q psy16633 361 VIN----FD-------FPLDIQCYIHRAGRTARGK--NQGTALSFVSLRE 397 (540)
Q Consensus 361 Vi~----~d-------~p~s~~~yiqr~GRagR~g--~~g~~i~~~~~~e 397 (540)
||+ || .|.|..+|.||+|||||.| ..|.|+.+++..+
T Consensus 360 VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 360 IIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp EECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGG
T ss_pred EEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCch
Confidence 999 99 8999999999999999988 4799999997665
No 21
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=1e-45 Score=411.88 Aligned_cols=338 Identities=20% Similarity=0.198 Sum_probs=222.3
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHH
Q psy16633 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHK 109 (540)
Q Consensus 30 ~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~ 109 (540)
..++..+||..|+++|.++++.+++|+|+++.+|||+|||++|++|+++.+.... ...+.++||++||++|+.|+.+
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~---~~~~~~~lvl~Pt~~L~~Q~~~ 79 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---QGQKGKVVFFANQIPVYEQNKS 79 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC---TTCCCCEEEECSSHHHHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCc---cCCCCeEEEEECCHHHHHHHHH
Confidence 4577889999999999999999999999999999999999999999999876532 1234789999999999999999
Q ss_pred HHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcC-CccCCccEEEEcCccccccCCcH-H
Q psy16633 110 NIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTL-DLKSSLEIVIIDEADLVFSFGYE-D 187 (540)
Q Consensus 110 ~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~-~~~~~l~~lViDEah~l~~~~~~-~ 187 (540)
.+++++... ++.+..+.|+.....+...+...++|+|+||++|.+.+..+.+ .+ ..+++|||||||++.+.... .
T Consensus 80 ~~~~~~~~~--~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l-~~~~~vViDEaH~~~~~~~~~~ 156 (696)
T 2ykg_A 80 VFSKYFERH--GYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSL-SIFTLMIFDECHNTSKQHPYNM 156 (696)
T ss_dssp HHHHHTTTT--TCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCG-GGCSEEEEETGGGCSTTCHHHH
T ss_pred HHHHHhccC--CceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCccccc-ccccEEEEeCCCcccCcccHHH
Confidence 999998654 6778888888776666666667899999999999999988766 44 88999999999998866522 2
Q ss_pred HHHHHHHh-----CCcccceeeEeeecc--------HHHHHHHHH---------------------hcCCCeEEEecCCC
Q psy16633 188 DMKAVLKF-----LPKLYQAILASATLS--------EDVLSLKHL---------------------ILRNPVILKLEEPA 233 (540)
Q Consensus 188 ~l~~i~~~-----l~~~~q~il~SATl~--------~~~~~~~~~---------------------~l~~p~~i~~~~~~ 233 (540)
.+...+.. .++..++++||||+. +.+..+... +...|.........
T Consensus 157 i~~~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~ 236 (696)
T 2ykg_A 157 IMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVES 236 (696)
T ss_dssp HHHHHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCC
T ss_pred HHHHHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCc
Confidence 22222222 245689999999996 222222211 11122211100000
Q ss_pred CCC-----------------------------------------------------------------------------
Q psy16633 234 IAP----------------------------------------------------------------------------- 236 (540)
Q Consensus 234 ~~~----------------------------------------------------------------------------- 236 (540)
...
T Consensus 237 ~~~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 316 (696)
T 2ykg_A 237 RISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHL 316 (696)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHH
Confidence 000
Q ss_pred ---------------------------------CCCeEEEEEE-------------c---CcccHHHHHHHHHHhc---c
Q psy16633 237 ---------------------------------VSQLAHYHIL-------------A---QEDEKATILYTLLKLN---L 264 (540)
Q Consensus 237 ---------------------------------~~~l~~~~~~-------------~---~~~~k~~~l~~ll~~~---~ 264 (540)
...+.+.+.. . ....|...+..++... .
T Consensus 317 ~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~ 396 (696)
T 2ykg_A 317 RKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLN 396 (696)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTC
T ss_pred HHHhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccC
Confidence 0000000000 0 1344666666666643 2
Q ss_pred cCCcEEEEecChhhHHHHHHHHHhCC----CceEEe--------CCCCCHHHHHHHHHHHhc-CCccEEEeCCCCccCCc
Q psy16633 265 VQGKTIIFVNTVDKCYKLKLYLEQFK----ISTCVL--------NSELPAKARCHAVYQFNQ-GLYDVIIASDEKALETP 331 (540)
Q Consensus 265 ~~~k~IIF~~s~~~~~~l~~~L~~~~----~~~~~l--------~~~l~~~~r~~i~~~F~~-g~~~iLIaT~~~~~~~~ 331 (540)
..+++||||+++..++.++..|...+ +++..+ ||+|++.+|..+++.|++ |..+|||||+
T Consensus 397 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~------- 469 (696)
T 2ykg_A 397 PETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATS------- 469 (696)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEE-------
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEec-------
Confidence 45799999999999999999999987 888888 569999999999999998 9999999999
Q ss_pred ccccccccccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEEeccccc
Q psy16633 332 QINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQ 398 (540)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e~ 398 (540)
++++|||+|++++||+||+|.|..+|+||+|| ||. +.|.++.+++..+.
T Consensus 470 ----------------v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~ 518 (696)
T 2ykg_A 470 ----------------VADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGV 518 (696)
T ss_dssp ----------------SSCCC---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCHHH
T ss_pred ----------------hhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCH
Confidence 99999999999999999999999999999999 998 78999999987654
No 22
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=1.5e-45 Score=411.18 Aligned_cols=329 Identities=20% Similarity=0.234 Sum_probs=264.8
Q ss_pred cCCCCHHHHHHHHHCCCCCChHHHHHHHHH-HhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCc
Q psy16633 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPL-ILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPS 100 (540)
Q Consensus 22 ~~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~-il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt 100 (540)
+++|++++.+.+.+.||..|+++|.++++. +.+|++++++||||||||++|.+|+++.+.. .+.+++|++|+
T Consensus 5 ~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~-------~~~~~l~i~P~ 77 (720)
T 2zj8_A 5 ELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILT-------QGGKAVYIVPL 77 (720)
T ss_dssp GCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHH-------HCSEEEEECSS
T ss_pred hcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHh-------CCCEEEEEcCc
Confidence 588999999999999999999999999998 8889999999999999999999999988864 25799999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCcccc
Q psy16633 101 KELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLV 180 (540)
Q Consensus 101 ~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l 180 (540)
++|+.|+++.++.+.. . ++++..++|+...... ....++|+|+||+++..++.+....+ .++++|||||||++
T Consensus 78 raLa~q~~~~~~~l~~-~--g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l-~~~~~vIiDE~H~l 150 (720)
T 2zj8_A 78 KALAEEKFQEFQDWEK-I--GLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGSSWI-KDVKILVADEIHLI 150 (720)
T ss_dssp GGGHHHHHHHTGGGGG-G--TCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTCTTG-GGEEEEEEETGGGG
T ss_pred HHHHHHHHHHHHHHHh-c--CCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcChhhh-hcCCEEEEECCccc
Confidence 9999999999965543 2 5777888886654432 12578999999999999888765545 89999999999999
Q ss_pred ccCCcHHHHHHHHHhCCcccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEE------EcC-----c
Q psy16633 181 FSFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHI------LAQ-----E 249 (540)
Q Consensus 181 ~~~~~~~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~------~~~-----~ 249 (540)
.+++++..+..++..++...|+++||||+++. ..+.. ++..+. +..... + ..+..++. ... .
T Consensus 151 ~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n~-~~~~~-~l~~~~-~~~~~r--p--~~l~~~~~~~~~~~~~~~~~~~~ 223 (720)
T 2zj8_A 151 GSRDRGATLEVILAHMLGKAQIIGLSATIGNP-EELAE-WLNAEL-IVSDWR--P--VKLRRGVFYQGFVTWEDGSIDRF 223 (720)
T ss_dssp GCTTTHHHHHHHHHHHBTTBEEEEEECCCSCH-HHHHH-HTTEEE-EECCCC--S--SEEEEEEEETTEEEETTSCEEEC
T ss_pred CCCcccHHHHHHHHHhhcCCeEEEEcCCcCCH-HHHHH-HhCCcc-cCCCCC--C--CcceEEEEeCCeeeccccchhhh
Confidence 99899999999998887789999999999863 33333 332211 111110 1 11221111 111 2
Q ss_pred ccHHHHHHHHHHhcccCCcEEEEecChhhHHHHHHHHHhC---------------------------------CCceEEe
Q psy16633 250 DEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQF---------------------------------KISTCVL 296 (540)
Q Consensus 250 ~~k~~~l~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~---------------------------------~~~~~~l 296 (540)
..+...+...+. .++++||||++++.|+.++..|.+. ..++..+
T Consensus 224 ~~~~~~~~~~~~---~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~ 300 (720)
T 2zj8_A 224 SSWEELVYDAIR---KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFH 300 (720)
T ss_dssp SSTTHHHHHHHH---TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEE
T ss_pred hHHHHHHHHHHh---CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeee
Confidence 334444554443 4689999999999999999988753 1248999
Q ss_pred CCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEe----CC----CCC
Q psy16633 297 NSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVIN----FD----FPL 368 (540)
Q Consensus 297 ~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~----~d----~p~ 368 (540)
||+|++.+|..+++.|++|..+|||||+ ++++|+|+|++++||+ || .|.
T Consensus 301 h~~l~~~~R~~v~~~f~~g~~~vlvaT~-----------------------~l~~Gvdip~~~~VI~~~~~yd~~g~~~~ 357 (720)
T 2zj8_A 301 HAGLGRDERVLVEENFRKGIIKAVVATP-----------------------TLSAGINTPAFRVIIRDIWRYSDFGMERI 357 (720)
T ss_dssp CTTSCHHHHHHHHHHHHTTSSCEEEECS-----------------------TTGGGCCCCBSEEEECCSEECCSSSCEEC
T ss_pred cCCCCHHHHHHHHHHHHCCCCeEEEECc-----------------------HhhccCCCCceEEEEcCCeeecCCCCccC
Confidence 9999999999999999999999999999 9999999999999999 77 589
Q ss_pred CcccchhccccccCCC--CCceEEEEecccc
Q psy16633 369 DIQCYIHRAGRTARGK--NQGTALSFVSLRE 397 (540)
Q Consensus 369 s~~~yiqr~GRagR~g--~~g~~i~~~~~~e 397 (540)
|..+|+||+|||||.| ..|.|+.+++..+
T Consensus 358 s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 388 (720)
T 2zj8_A 358 PIIEVHQMLGRAGRPKYDEVGEGIIVSTSDD 388 (720)
T ss_dssp CHHHHHHHHTTBCCTTTCSEEEEEEECSSSC
T ss_pred CHHHHHHHHhhcCCCCCCCCceEEEEecCcc
Confidence 9999999999999988 4688999988765
No 23
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=2.4e-45 Score=421.36 Aligned_cols=280 Identities=21% Similarity=0.276 Sum_probs=227.0
Q ss_pred HCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHH
Q psy16633 35 KLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQEL 114 (540)
Q Consensus 35 ~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l 114 (540)
.+|| +||++|+++||.+++|+|++++||||||||++|++|+++.+ ..+.++||++||++||.|+++.++.+
T Consensus 74 ~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~--------~~~~~~Lil~PtreLa~Q~~~~l~~l 144 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA--------RKGKKSALVFPTVTLVKQTLERLQKL 144 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHH--------TTTCCEEEEESSHHHHHHHHHHHHTT
T ss_pred hcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHH--------hcCCeEEEEechHHHHHHHHHHHHHh
Confidence 4788 69999999999999999999999999999998888887766 36789999999999999999999997
Q ss_pred HhhcCCCceEEEeecCccc---ccchhhhhC-CCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCcccccc--------
Q psy16633 115 TMKCSRDVKCVDISEQVDV---SVQEPLLVE-RPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFS-------- 182 (540)
Q Consensus 115 ~~~~~~~i~~~~~~~~~~~---~~~~~~l~~-~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~-------- 182 (540)
+ ..++.+..+.|+... ..+...+.. .++|+|+||++|.+++.. +.+ .++++|||||||++..
T Consensus 145 ~---~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~-~~l~~lViDEaH~l~~~~r~~Dr~ 218 (1104)
T 4ddu_A 145 A---DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQ-KRFDFVFVDDVDAVLKASRNIDTL 218 (1104)
T ss_dssp S---CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHT-SCCSEEEESCHHHHTTSSHHHHHH
T ss_pred h---CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcc-cCcCEEEEeCCCccccccccchhh
Confidence 6 347888999998876 333444444 499999999999888775 333 7899999999976554
Q ss_pred ---CCcHHH-HHHHHHhCC-----------cccceeeEeee-ccHHHHH-HHHHhcCCCeEEEecCCCCCCCCCeEEEEE
Q psy16633 183 ---FGYEDD-MKAVLKFLP-----------KLYQAILASAT-LSEDVLS-LKHLILRNPVILKLEEPAIAPVSQLAHYHI 245 (540)
Q Consensus 183 ---~~~~~~-l~~i~~~l~-----------~~~q~il~SAT-l~~~~~~-~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~ 245 (540)
+||..+ +..++..+| ...|+++|||| .+..+.. +....+. +.+.... .....+.+.++
T Consensus 219 L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~-~~~~~i~~~~~ 293 (1104)
T 4ddu_A 219 LMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLV-SVARNITHVRI 293 (1104)
T ss_dssp HHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCC-CCCCCEEEEEE
T ss_pred hHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCC-CCcCCceeEEE
Confidence 788877 888988877 78999999999 5554432 2222222 2222221 23455777776
Q ss_pred EcCcccHHHHHHHHHHhcccCCcEEEEecChhhHHHHHHHHHhCCCceE-EeCCCCCHHHHHHHHHHHhcCCccEEEe--
Q psy16633 246 LAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTC-VLNSELPAKARCHAVYQFNQGLYDVIIA-- 322 (540)
Q Consensus 246 ~~~~~~k~~~l~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~-~l~~~l~~~~r~~i~~~F~~g~~~iLIa-- 322 (540)
.+ ++...+..+++. .++++||||++++.|+.++..|...|+.+. .+||. |.. ++.|++|..+||||
T Consensus 294 ~~---~k~~~L~~ll~~--~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVata 362 (1104)
T 4ddu_A 294 SS---RSKEKLVELLEI--FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKINILIGVQ 362 (1104)
T ss_dssp SC---CCHHHHHHHHHH--HCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCSEEEEET
T ss_pred ec---CHHHHHHHHHHh--cCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCCEEEEec
Confidence 55 455566666665 358999999999999999999999999998 99992 555 99999999999999
Q ss_pred --CCCCccCCcccccccccccccCccccccccCCCCC-cCEEEeCCCCC
Q psy16633 323 --SDEKALETPQINSTNNRKRKRDKESGVSRGIDFQF-VSNVINFDFPL 368 (540)
Q Consensus 323 --T~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~-v~~Vi~~d~p~ 368 (540)
|+ ++++|||+|+ |++|||||+|.
T Consensus 363 s~Td-----------------------vlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 363 AYYG-----------------------KLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp TTHH-----------------------HHCCSCCCTTTCCEEEEESCCE
T ss_pred CCCC-----------------------eeEecCcCCCCCCEEEEECCCC
Confidence 99 9999999999 99999999998
No 24
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=1.1e-44 Score=392.83 Aligned_cols=331 Identities=18% Similarity=0.160 Sum_probs=201.8
Q ss_pred CCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHh
Q psy16633 37 GWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTM 116 (540)
Q Consensus 37 g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~ 116 (540)
+.-.|||+|.++++.+++|+++++.+|||||||++|++|+++.+.... ...+.++||++||++|+.|+++.+..++.
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~---~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 80 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATKVPVYEQQKNVFKHHFE 80 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC---SSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCc---ccCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 445899999999999999999999999999999999999999886532 12378899999999999999999999988
Q ss_pred hcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCCcHHHHH-HHHHh
Q psy16633 117 KCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMK-AVLKF 195 (540)
Q Consensus 117 ~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~-~i~~~ 195 (540)
.. ++.+..++|+.....+...+..+++|+|+||+++.+++..+.+.....+++|||||||++.+++....+. .++..
T Consensus 81 ~~--~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~ 158 (556)
T 4a2p_A 81 RQ--GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQ 158 (556)
T ss_dssp GG--TCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHH
T ss_pred cc--CceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHh
Confidence 76 6778888888876666666667899999999999999988776333899999999999999887543332 22221
Q ss_pred -C---CcccceeeEeeeccH-----------HHHHHHHHh------------------cCCCeEEEecCCCCCCCCC---
Q psy16633 196 -L---PKLYQAILASATLSE-----------DVLSLKHLI------------------LRNPVILKLEEPAIAPVSQ--- 239 (540)
Q Consensus 196 -l---~~~~q~il~SATl~~-----------~~~~~~~~~------------------l~~p~~i~~~~~~~~~~~~--- 239 (540)
+ ++..|+++||||++. .+..+.... ...|.......... ....
T Consensus 159 ~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 237 (556)
T 4a2p_A 159 KFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRR-IHNPFAA 237 (556)
T ss_dssp HHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCC-SCCHHHH
T ss_pred hhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCC-cCChHHH
Confidence 1 345789999999942 111111111 11121111100000 0000
Q ss_pred ------------------eEEEEE--------------------------------------------------------
Q psy16633 240 ------------------LAHYHI-------------------------------------------------------- 245 (540)
Q Consensus 240 ------------------l~~~~~-------------------------------------------------------- 245 (540)
+.....
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 317 (556)
T 4a2p_A 238 IISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALII 317 (556)
T ss_dssp HHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000
Q ss_pred -------------------------------------------------EcCcccHHHHHHHHHHhc---ccCCcEEEEe
Q psy16633 246 -------------------------------------------------LAQEDEKATILYTLLKLN---LVQGKTIIFV 273 (540)
Q Consensus 246 -------------------------------------------------~~~~~~k~~~l~~ll~~~---~~~~k~IIF~ 273 (540)
......|...+..++... ....++||||
T Consensus 318 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~ 397 (556)
T 4a2p_A 318 SEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFA 397 (556)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred hhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEE
Confidence 000133444555555432 3467999999
Q ss_pred cChhhHHHHHHHHHhC------------CCceEEeCCCCCHHHHHHHHHHHhc-CCccEEEeCCCCccCCcccccccccc
Q psy16633 274 NTVDKCYKLKLYLEQF------------KISTCVLNSELPAKARCHAVYQFNQ-GLYDVIIASDEKALETPQINSTNNRK 340 (540)
Q Consensus 274 ~s~~~~~~l~~~L~~~------------~~~~~~l~~~l~~~~r~~i~~~F~~-g~~~iLIaT~~~~~~~~~~~~~~~~~ 340 (540)
++++.++.++..|.+. |.....+||+|++.+|..+++.|++ |.++|||||+
T Consensus 398 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~---------------- 461 (556)
T 4a2p_A 398 KTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS---------------- 461 (556)
T ss_dssp SSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC----------------
T ss_pred ccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcC----------------
Confidence 9999999999999875 4555667888999999999999999 9999999999
Q ss_pred cccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEEeccccc
Q psy16633 341 RKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQ 398 (540)
Q Consensus 341 ~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e~ 398 (540)
++++|||+|++++||+||+|+|+..|+||+|| ||. +.|.+++|++..+.
T Consensus 462 -------~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~ 510 (556)
T 4a2p_A 462 -------VADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 510 (556)
T ss_dssp ------------------CEEEEETCCSCHHHHHHC----------CCEEEEESCHHH
T ss_pred -------chhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcch
Confidence 99999999999999999999999999999999 998 88999999987654
No 25
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=5.1e-45 Score=395.88 Aligned_cols=333 Identities=15% Similarity=0.124 Sum_probs=258.0
Q ss_pred CCHHHHHHHH--------HCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEE
Q psy16633 25 LFCIPLQAIA--------KLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALV 96 (540)
Q Consensus 25 L~~~i~~~l~--------~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vli 96 (540)
|++.+.+++. .+|| +||++|..++|.+++|+ ++.|+||+|||++|.+|++...+ .+..++|
T Consensus 61 ld~~l~ea~a~vrea~~r~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL--------~g~~vlV 129 (844)
T 1tf5_A 61 TDDLLVEAFAVVREASRRVTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNAL--------TGKGVHV 129 (844)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHT--------TSSCEEE
T ss_pred hHHHHHHHHHHHHHHHHHHcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHH--------cCCCEEE
Confidence 4444555554 5899 99999999999999999 99999999999999999985432 3568999
Q ss_pred EcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHH-HHHHhcC------cCCccCCc
Q psy16633 97 LSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARA-LAHLKAK------TLDLKSSL 169 (540)
Q Consensus 97 l~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l-~~~l~~~------~~~~~~~l 169 (540)
++||++||.|.++++..++..+ ++++..+.|+.+...+ ....+++|+|+||++| .+++..+ .+.+ +.+
T Consensus 130 ltptreLA~qd~e~~~~l~~~l--gl~v~~i~gg~~~~~r--~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~l-r~~ 204 (844)
T 1tf5_A 130 VTVNEYLASRDAEQMGKIFEFL--GLTVGLNLNSMSKDEK--REAYAADITYSTNNELGFDYLRDNMVLYKEQMVQ-RPL 204 (844)
T ss_dssp EESSHHHHHHHHHHHHHHHHHT--TCCEEECCTTSCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCC-CCC
T ss_pred EeCCHHHHHHHHHHHHHHHhhc--CCeEEEEeCCCCHHHH--HHhcCCCEEEECchhhhHHHHHHhhhcchhhhcc-cCC
Confidence 9999999999999999999888 6888888888765433 3334789999999999 6666543 2344 889
Q ss_pred cEEEEcCccccc-cCC---------------cHHHHHHHHHhCC---------ccccee-----------------eEee
Q psy16633 170 EIVIIDEADLVF-SFG---------------YEDDMKAVLKFLP---------KLYQAI-----------------LASA 207 (540)
Q Consensus 170 ~~lViDEah~l~-~~~---------------~~~~l~~i~~~l~---------~~~q~i-----------------l~SA 207 (540)
.++|+||||.|+ +.+ |...+..++..++ +..|++ ++||
T Consensus 205 ~~lVlDEaD~mLiDea~tplIisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsa 284 (844)
T 1tf5_A 205 HFAVIDEVDSILIDEARTPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDV 284 (844)
T ss_dssp CEEEEETHHHHHTTTTTCEEEEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSG
T ss_pred CEEEECchhhhhhhccccchhhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCC
Confidence 999999999987 654 6788999999997 367887 8999
Q ss_pred eccHHHHHHH-----HHhc-CCCeEE-------EecCCC------------------------C----------------
Q psy16633 208 TLSEDVLSLK-----HLIL-RNPVIL-------KLEEPA------------------------I---------------- 234 (540)
Q Consensus 208 Tl~~~~~~~~-----~~~l-~~p~~i-------~~~~~~------------------------~---------------- 234 (540)
|.+.....+. ..++ .++..+ .+++.. .
T Consensus 285 t~~~~~~~i~~al~A~~l~~~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~f 364 (844)
T 1tf5_A 285 KHVALNHHINQALKAHVAMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYF 364 (844)
T ss_dssp GGHHHHHHHHHHHHHHHTCCBTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHH
T ss_pred ccchhHHHHHHHHHHHHHhhcCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHH
Confidence 9875333321 1122 121111 011000 0
Q ss_pred ----------------------------------CCCCCeE-EEEEEcCcccHHHHHHHHHHh-cccCCcEEEEecChhh
Q psy16633 235 ----------------------------------APVSQLA-HYHILAQEDEKATILYTLLKL-NLVQGKTIIFVNTVDK 278 (540)
Q Consensus 235 ----------------------------------~~~~~l~-~~~~~~~~~~k~~~l~~ll~~-~~~~~k~IIF~~s~~~ 278 (540)
.+..... +.++.+...+|+..+...+.. ...+.++||||+|+..
T Consensus 365 r~y~kl~GmTGTa~te~~e~~~iY~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~ 444 (844)
T 1tf5_A 365 RMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVET 444 (844)
T ss_dssp TTSSEEEEEESCCGGGHHHHHHHHCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHH
T ss_pred HHHhhhccCCcccchhHHHHHHHhCCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHH
Confidence 0000000 113445667788877776653 2345689999999999
Q ss_pred HHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccccccccccCccccccccCCCC--
Q psy16633 279 CYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQ-- 356 (540)
Q Consensus 279 ~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~-- 356 (540)
++.|+..|.+.|+++.++||++.+.+|..+.+.|+.| .|+|||| +++||+|++
T Consensus 445 se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATd-----------------------mAgRG~DI~l~ 499 (844)
T 1tf5_A 445 SELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKG--AVTIATN-----------------------MAGRGTDIKLG 499 (844)
T ss_dssp HHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTSTT--CEEEEET-----------------------TSSTTCCCCCC
T ss_pred HHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCC-----------------------ccccCcCcccc
Confidence 9999999999999999999999888887666555554 7999999 999999999
Q ss_pred ------CcCEEEeCCCCCCcccchhccccccCCCCCceEEEEeccccc
Q psy16633 357 ------FVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQ 398 (540)
Q Consensus 357 ------~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e~ 398 (540)
++.+|||||.|.|.+.|+||+|||||.|.+|.+++|++..|.
T Consensus 500 ~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 500 EGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp TTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred chhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHH
Confidence 788999999999999999999999999999999999997763
No 26
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=6.3e-44 Score=386.40 Aligned_cols=331 Identities=20% Similarity=0.203 Sum_probs=228.5
Q ss_pred CChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcC
Q psy16633 40 EPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCS 119 (540)
Q Consensus 40 ~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~ 119 (540)
.||++|.++++.+++|+++++.+|||||||++|++|+++.+.... ...+.++||++||++|+.|+++.+..++...
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~---~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~- 79 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---CGQKGKVVFFANQIPVYEQQATVFSRYFERL- 79 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC---SSCCCCEEEECSSHHHHHHHHHHHHHHHHTT-
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcc---cCCCCEEEEEeCCHHHHHHHHHHHHHHhccC-
Confidence 799999999999999999999999999999999999999886531 1237889999999999999999999998766
Q ss_pred CCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCCcH-HHHHHHHHh-C-
Q psy16633 120 RDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYE-DDMKAVLKF-L- 196 (540)
Q Consensus 120 ~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~~-~~l~~i~~~-l- 196 (540)
++.+..+.|+.....+...+..+++|+|+||+++.+++..+.......+++|||||||++.+.+.. ..+...+.. +
T Consensus 80 -~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~ 158 (555)
T 3tbk_A 80 -GYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLG 158 (555)
T ss_dssp -TCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTS
T ss_pred -CcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhc
Confidence 678888889887776666666789999999999999998877633388999999999999887532 323233322 1
Q ss_pred ---CcccceeeEeeeccHH--------HHHHHH--HhcCCCeEEEecCC-----CCCCCCCeEEEEEE------------
Q psy16633 197 ---PKLYQAILASATLSED--------VLSLKH--LILRNPVILKLEEP-----AIAPVSQLAHYHIL------------ 246 (540)
Q Consensus 197 ---~~~~q~il~SATl~~~--------~~~~~~--~~l~~p~~i~~~~~-----~~~~~~~l~~~~~~------------ 246 (540)
....|+++||||++.. ...+.. ..+..+.+...... ..............
T Consensus 159 ~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (555)
T 3tbk_A 159 ESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIIS 238 (555)
T ss_dssp SCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHH
T ss_pred cccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHH
Confidence 2457899999999531 111111 11221111111100 00000000000000
Q ss_pred --------------------------------------------------------------------------------
Q psy16633 247 -------------------------------------------------------------------------------- 246 (540)
Q Consensus 247 -------------------------------------------------------------------------------- 246 (540)
T Consensus 239 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 318 (555)
T 3tbk_A 239 QLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISE 318 (555)
T ss_dssp HHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence
Q ss_pred ------------------------------------------------cCcccHHHHHHHHHHhc---ccCCcEEEEecC
Q psy16633 247 ------------------------------------------------AQEDEKATILYTLLKLN---LVQGKTIIFVNT 275 (540)
Q Consensus 247 ------------------------------------------------~~~~~k~~~l~~ll~~~---~~~~k~IIF~~s 275 (540)
.....|...+..++... ...+++||||++
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~ 398 (555)
T 3tbk_A 319 DAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKT 398 (555)
T ss_dssp HSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSS
T ss_pred hhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCc
Confidence 00133444555555432 245799999999
Q ss_pred hhhHHHHHHHHHhCC----C--------ceEEeCCCCCHHHHHHHHHHHhc-CCccEEEeCCCCccCCcccccccccccc
Q psy16633 276 VDKCYKLKLYLEQFK----I--------STCVLNSELPAKARCHAVYQFNQ-GLYDVIIASDEKALETPQINSTNNRKRK 342 (540)
Q Consensus 276 ~~~~~~l~~~L~~~~----~--------~~~~l~~~l~~~~r~~i~~~F~~-g~~~iLIaT~~~~~~~~~~~~~~~~~~~ 342 (540)
++.++.++..|...+ + ....+||+|++.+|..+++.|++ |.++|||||+
T Consensus 399 ~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~------------------ 460 (555)
T 3tbk_A 399 RALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATS------------------ 460 (555)
T ss_dssp HHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECC------------------
T ss_pred HHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcc------------------
Confidence 999999999999864 3 44455669999999999999999 9999999999
Q ss_pred cCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEEeccccccc
Q psy16633 343 RDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDL 400 (540)
Q Consensus 343 ~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e~~~ 400 (540)
++++|+|+|++++||+||+|+|+.+|+||+|| ||. +.|.+++|+++.+...
T Consensus 461 -----~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~ 511 (555)
T 3tbk_A 461 -----VADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIE 511 (555)
T ss_dssp -----CTTCCEETTSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHH
T ss_pred -----hhhcCCccccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHH
Confidence 99999999999999999999999999999999 998 8899999998776543
No 27
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=2.2e-45 Score=408.81 Aligned_cols=329 Identities=17% Similarity=0.226 Sum_probs=258.8
Q ss_pred cCC--CCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcC
Q psy16633 22 TFT--LFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSP 99 (540)
Q Consensus 22 ~~~--L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~P 99 (540)
+++ |++.+.+++.++||.+|+++|.++++.+++|++++++||||||||++|.+|+++.+. .+.+++|++|
T Consensus 5 ~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~--------~~~~~l~i~P 76 (702)
T 2p6r_A 5 ELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAI--------KGGKSLYVVP 76 (702)
T ss_dssp HHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHH--------TTCCEEEEES
T ss_pred hhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHH--------hCCcEEEEeC
Confidence 455 899999999999999999999999999999999999999999999999999998874 2578999999
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccc
Q psy16633 100 SKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADL 179 (540)
Q Consensus 100 t~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~ 179 (540)
+++|+.|+++.++.+.. .++++..++|+...... ....++|+|+||+++..++.+....+ .++++|||||||+
T Consensus 77 ~r~La~q~~~~~~~~~~---~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l-~~~~~vIiDE~H~ 149 (702)
T 2p6r_A 77 LRALAGEKYESFKKWEK---IGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWI-KAVSCLVVDEIHL 149 (702)
T ss_dssp SHHHHHHHHHHHTTTTT---TTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGG-GGCCEEEETTGGG
T ss_pred cHHHHHHHHHHHHHHHh---cCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHH-hhcCEEEEeeeee
Confidence 99999999999864432 25777888887654432 12478999999999999988765444 8999999999999
Q ss_pred cccCCcHHHHHHHHHhC---CcccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEE------EcCcc
Q psy16633 180 VFSFGYEDDMKAVLKFL---PKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHI------LAQED 250 (540)
Q Consensus 180 l~~~~~~~~l~~i~~~l---~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~------~~~~~ 250 (540)
+.+++++..+..++..+ ++..|+++||||+++ ...+.. ++..+. +...... ..+..++. .....
T Consensus 150 l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~-~l~~~~-~~~~~r~----~~l~~~~~~~~~~~~~~~~ 222 (702)
T 2p6r_A 150 LDSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAE-WLDADY-YVSDWRP----VPLVEGVLCEGTLELFDGA 222 (702)
T ss_dssp GGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHH-HTTCEE-EECCCCS----SCEEEEEECSSEEEEEETT
T ss_pred cCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHH-HhCCCc-ccCCCCC----ccceEEEeeCCeeeccCcc
Confidence 99988888888776665 467899999999986 344444 333322 2111111 11221111 01111
Q ss_pred -------cHHHHHHHHHHhcccCCcEEEEecChhhHHHHHHHHHhC------------------------------CCce
Q psy16633 251 -------EKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQF------------------------------KIST 293 (540)
Q Consensus 251 -------~k~~~l~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~------------------------------~~~~ 293 (540)
.+...+...+. .++++||||++++.++.++..|.+. +.++
T Consensus 223 ~~~~~~~~~~~~~~~~~~---~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v 299 (702)
T 2p6r_A 223 FSTSRRVKFEELVEECVA---ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGA 299 (702)
T ss_dssp EEEEEECCHHHHHHHHHH---TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTC
T ss_pred hhhhhhhhHHHHHHHHHh---cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCe
Confidence 14455555443 4689999999999999999988652 2357
Q ss_pred EEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEe----CC---C
Q psy16633 294 CVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVIN----FD---F 366 (540)
Q Consensus 294 ~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~----~d---~ 366 (540)
..+||+|++.+|..+++.|++|..+|||||+ ++++|+|+|++++||+ || .
T Consensus 300 ~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~-----------------------~l~~Gidip~~~~VI~~~~~yd~~~~ 356 (702)
T 2p6r_A 300 AFHHAGLLNGQRRVVEDAFRRGNIKVVVATP-----------------------TLAAGVNLPARRVIVRSLYRFDGYSK 356 (702)
T ss_dssp CEECTTSCHHHHHHHHHHHHTTSCCEEEECS-----------------------TTTSSSCCCBSEEEECCSEEESSSEE
T ss_pred EEecCCCCHHHHHHHHHHHHCCCCeEEEECc-----------------------HHhccCCCCceEEEEcCceeeCCCCC
Confidence 8899999999999999999999999999999 9999999999999999 77 6
Q ss_pred CCCcccchhccccccCCC--CCceEEEEeccccc
Q psy16633 367 PLDIQCYIHRAGRTARGK--NQGTALSFVSLREQ 398 (540)
Q Consensus 367 p~s~~~yiqr~GRagR~g--~~g~~i~~~~~~e~ 398 (540)
|.|..+|+||+|||||.| ..|.|+.+++..+.
T Consensus 357 ~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~ 390 (702)
T 2p6r_A 357 RIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDR 390 (702)
T ss_dssp ECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGH
T ss_pred cCCHHHHHHHhhhcCCCCCCCCceEEEEecCccH
Confidence 899999999999999988 47999999987663
No 28
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.5e-44 Score=405.31 Aligned_cols=315 Identities=20% Similarity=0.241 Sum_probs=254.9
Q ss_pred HHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHH
Q psy16633 33 IAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQ 112 (540)
Q Consensus 33 l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~ 112 (540)
...++| .|+++|.+|++.+.+|++++++||||||||++|.+|++..+. .+.++||++||++|+.|+++.+.
T Consensus 80 ~~~~~f-~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~--------~g~rvL~l~PtkaLa~Q~~~~l~ 150 (1010)
T 2xgj_A 80 ARTYPF-TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK--------NKQRVIYTSPIKALSNQKYRELL 150 (1010)
T ss_dssp SCCCSS-CCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHH--------TTCEEEEEESSHHHHHHHHHHHH
T ss_pred HHhCCC-CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhc--------cCCeEEEECChHHHHHHHHHHHH
Confidence 445688 499999999999999999999999999999999999988762 46899999999999999999999
Q ss_pred HHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCCcHHHHHHH
Q psy16633 113 ELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAV 192 (540)
Q Consensus 113 ~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i 192 (540)
.++. .+..++|+.... ..++|+|+||++|.+++.++...+ .++++|||||||++.+++++..+..+
T Consensus 151 ~~~~------~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~~~l-~~l~lVViDEaH~l~d~~rg~~~e~i 216 (1010)
T 2xgj_A 151 AEFG------DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVM-REVAWVIFDEVHYMRDKERGVVWEET 216 (1010)
T ss_dssp HHHS------CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTCTTG-GGEEEEEEETGGGGGCTTTHHHHHHH
T ss_pred HHhC------CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCcchh-hcCCEEEEechhhhcccchhHHHHHH
Confidence 8864 456677876543 367999999999999998876666 89999999999999999999999999
Q ss_pred HHhCCcccceeeEeeeccHHHH--HHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcC---------ccc----------
Q psy16633 193 LKFLPKLYQAILASATLSEDVL--SLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQ---------EDE---------- 251 (540)
Q Consensus 193 ~~~l~~~~q~il~SATl~~~~~--~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~---------~~~---------- 251 (540)
+..++...|+++||||+++... .+.......|..+....... ..+.++++... ...
T Consensus 217 l~~l~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp---~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (1010)
T 2xgj_A 217 IILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRP---TPLQHYLFPAHGDGIYLVVDEKSTFREENFQKA 293 (1010)
T ss_dssp HHHSCTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCS---SCEEEEEEETTSSCCEEEECTTCCBCHHHHHHH
T ss_pred HHhcCCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCc---ccceEEEEecCCcceeeeeccccccchHHHHHH
Confidence 9999999999999999987543 33333445566554443321 22444443311 000
Q ss_pred -------------------------H--------HHHHHHHHHh--cccCCcEEEEecChhhHHHHHHHHHhCCC-----
Q psy16633 252 -------------------------K--------ATILYTLLKL--NLVQGKTIIFVNTVDKCYKLKLYLEQFKI----- 291 (540)
Q Consensus 252 -------------------------k--------~~~l~~ll~~--~~~~~k~IIF~~s~~~~~~l~~~L~~~~~----- 291 (540)
| ...+..++.. ....+++||||+++..|+.++..|...++
T Consensus 294 ~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e 373 (1010)
T 2xgj_A 294 MASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDE 373 (1010)
T ss_dssp HHTCC------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHH
T ss_pred HHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHH
Confidence 0 1112222221 11245899999999999999998876543
Q ss_pred ----------------------------------ceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCccccccc
Q psy16633 292 ----------------------------------STCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTN 337 (540)
Q Consensus 292 ----------------------------------~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~ 337 (540)
+++.+||+|++.+|..+++.|++|.++|||||+
T Consensus 374 ~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~------------- 440 (1010)
T 2xgj_A 374 KEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATE------------- 440 (1010)
T ss_dssp HHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEG-------------
T ss_pred HHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEeh-------------
Confidence 278899999999999999999999999999999
Q ss_pred ccccccCccccccccCCCCCcCEEEe----CCC----CCCcccchhccccccCCCC--CceEEEEeccc
Q psy16633 338 NRKRKRDKESGVSRGIDFQFVSNVIN----FDF----PLDIQCYIHRAGRTARGKN--QGTALSFVSLR 396 (540)
Q Consensus 338 ~~~~~~~~~~~~~~GiD~~~v~~Vi~----~d~----p~s~~~yiqr~GRagR~g~--~g~~i~~~~~~ 396 (540)
++++|||+|++++||+ ||. |.|+.+|+||+|||||.|. .|.+++++.+.
T Consensus 441 ----------~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 441 ----------TFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp ----------GGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSC
T ss_pred ----------HhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCC
Confidence 9999999999999999 999 8999999999999999997 59999999754
No 29
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=1.3e-44 Score=415.41 Aligned_cols=314 Identities=20% Similarity=0.259 Sum_probs=249.3
Q ss_pred HHHHH-CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHH
Q psy16633 31 QAIAK-LGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHK 109 (540)
Q Consensus 31 ~~l~~-~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~ 109 (540)
+.+.+ +||. | ++|.++||.+++|+|+++.||||||||+ |.+|++..+.. .+.++||++||++||.|+++
T Consensus 48 ~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~-------~~~~~lil~PtreLa~Q~~~ 117 (1054)
T 1gku_B 48 EFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL-------KGKRCYVIFPTSLLVIQAAE 117 (1054)
T ss_dssp HHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT-------TSCCEEEEESCHHHHHHHHH
T ss_pred HHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh-------cCCeEEEEeccHHHHHHHHH
Confidence 44444 7998 9 9999999999999999999999999998 99999988754 57899999999999999999
Q ss_pred HHHHHHhhcCCCc----eEEEeecCcccccc---hhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCcccccc
Q psy16633 110 NIQELTMKCSRDV----KCVDISEQVDVSVQ---EPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFS 182 (540)
Q Consensus 110 ~l~~l~~~~~~~i----~~~~~~~~~~~~~~---~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~ 182 (540)
.++.++... ++ .+..++|+.....+ ...+.. ++|+|+||++|.+++.+ + +++++|||||||++++
T Consensus 118 ~l~~l~~~~--~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L-~~l~~lViDEah~~l~ 189 (1054)
T 1gku_B 118 TIRKYAEKA--GVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----L-GHFDFIFVDDVDAILK 189 (1054)
T ss_dssp HHHHHHTTT--CCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----S-CCCSEEEESCHHHHHT
T ss_pred HHHHHHhhc--CCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----h-ccCCEEEEeChhhhhh
Confidence 999998776 45 78888888776553 333444 99999999999987765 3 6899999999999998
Q ss_pred CCcHHHHHHHHHhC-----------CcccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcCccc
Q psy16633 183 FGYEDDMKAVLKFL-----------PKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDE 251 (540)
Q Consensus 183 ~~~~~~l~~i~~~l-----------~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~~~ 251 (540)
+ ...+..++..+ +...|++++|||++.. ..+...++.++..+.+.... .....+.++++ ..+
T Consensus 190 ~--~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~-~~~~~i~~~~~---~~~ 262 (1054)
T 1gku_B 190 A--SKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSR-ITVRNVEDVAV---NDE 262 (1054)
T ss_dssp S--THHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCE-ECCCCEEEEEE---SCC
T ss_pred c--cccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcc-cCcCCceEEEe---chh
Confidence 4 56777777766 3567999999999886 43333333333333332222 22344666655 355
Q ss_pred HHHHHHHHHHhcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEe----CCCCc
Q psy16633 252 KATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIA----SDEKA 327 (540)
Q Consensus 252 k~~~l~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIa----T~~~~ 327 (540)
+...+..+++.. ++++||||++++.|+.++..|... +++..+||++ ..+++.|++|..+|||| |+
T Consensus 263 k~~~L~~ll~~~--~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Td--- 331 (1054)
T 1gku_B 263 SISTLSSILEKL--GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYG--- 331 (1054)
T ss_dssp CTTTTHHHHTTS--CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------
T ss_pred HHHHHHHHHhhc--CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCC---
Confidence 666667777643 578999999999999999999988 9999999998 37789999999999999 89
Q ss_pred cCCcccccccccccccCccccccccCCCCCc-CEEEeCCCC---------------------------------------
Q psy16633 328 LETPQINSTNNRKRKRDKESGVSRGIDFQFV-SNVINFDFP--------------------------------------- 367 (540)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v-~~Vi~~d~p--------------------------------------- 367 (540)
++++|||+|+| ++||+||+|
T Consensus 332 --------------------v~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (1054)
T 1gku_B 332 --------------------TLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVER 391 (1054)
T ss_dssp -----------------------CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSS
T ss_pred --------------------eeEeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 89999999996 999999999
Q ss_pred --------------------------------CCcccchhccccccCCCCCc--eEEEEeccccccc
Q psy16633 368 --------------------------------LDIQCYIHRAGRTARGKNQG--TALSFVSLREQDL 400 (540)
Q Consensus 368 --------------------------------~s~~~yiqr~GRagR~g~~g--~~i~~~~~~e~~~ 400 (540)
.|..+|+||+|||||.|..| .+++++..++...
T Consensus 392 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~ 458 (1054)
T 1gku_B 392 HIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSEL 458 (1054)
T ss_dssp CHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHH
T ss_pred HHHHHHHHHHHHhccccccccceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHH
Confidence 78999999999999987776 4888888777655
No 30
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=3e-43 Score=396.53 Aligned_cols=334 Identities=19% Similarity=0.170 Sum_probs=208.5
Q ss_pred HCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHH
Q psy16633 35 KLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQEL 114 (540)
Q Consensus 35 ~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l 114 (540)
.+|+..||++|.++|+.+++|+++++.+|||||||++|++|+++.+.... ...+.++||++||++|+.|+++.++.+
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~---~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~ 319 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATKVPVYEQQKNVFKHH 319 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC---SSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhcc---ccCCCeEEEEeCCHHHHHHHHHHHHHh
Confidence 46889999999999999999999999999999999999999999886531 123789999999999999999999999
Q ss_pred HhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCCcHHH-HHHHH
Q psy16633 115 TMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDD-MKAVL 193 (540)
Q Consensus 115 ~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~~~~-l~~i~ 193 (540)
+... ++.+..++|+.....+...+..+++|+|+||+++.+++..+.+.....+++|||||||++.+.+.... +..+.
T Consensus 320 ~~~~--~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~ 397 (797)
T 4a2q_A 320 FERQ--GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYL 397 (797)
T ss_dssp HGGG--TCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHH
T ss_pred cccC--CceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHH
Confidence 8766 67888888888777666667778999999999999999887763338899999999999987653322 22222
Q ss_pred Hh----CCcccceeeEeeeccH-----------HHHHHHHH------------------hcCCCeEEEecCCC-CCCC--
Q psy16633 194 KF----LPKLYQAILASATLSE-----------DVLSLKHL------------------ILRNPVILKLEEPA-IAPV-- 237 (540)
Q Consensus 194 ~~----l~~~~q~il~SATl~~-----------~~~~~~~~------------------~l~~p~~i~~~~~~-~~~~-- 237 (540)
.. ..+..|+++||||++. .+..+... ++..|......... ....
T Consensus 398 ~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 477 (797)
T 4a2q_A 398 EQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFA 477 (797)
T ss_dssp HHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHH
T ss_pred HHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHH
Confidence 22 1345789999999952 22222111 11122111100000 0000
Q ss_pred --------------------CCeEEE------------EE----------------------------------------
Q psy16633 238 --------------------SQLAHY------------HI---------------------------------------- 245 (540)
Q Consensus 238 --------------------~~l~~~------------~~---------------------------------------- 245 (540)
..+... ++
T Consensus 478 ~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 557 (797)
T 4a2q_A 478 AIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALI 557 (797)
T ss_dssp HHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHh
Confidence 000000 00
Q ss_pred --------------------------------------------------EcCcccHHHHHHHHHHh---cccCCcEEEE
Q psy16633 246 --------------------------------------------------LAQEDEKATILYTLLKL---NLVQGKTIIF 272 (540)
Q Consensus 246 --------------------------------------------------~~~~~~k~~~l~~ll~~---~~~~~k~IIF 272 (540)
......|...+..++.. ....+++|||
T Consensus 558 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF 637 (797)
T 4a2q_A 558 ISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLF 637 (797)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEE
T ss_pred hhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEE
Confidence 00012344445555543 1345799999
Q ss_pred ecChhhHHHHHHHHHhC------------CCceEEeCCCCCHHHHHHHHHHHhc-CCccEEEeCCCCccCCccccccccc
Q psy16633 273 VNTVDKCYKLKLYLEQF------------KISTCVLNSELPAKARCHAVYQFNQ-GLYDVIIASDEKALETPQINSTNNR 339 (540)
Q Consensus 273 ~~s~~~~~~l~~~L~~~------------~~~~~~l~~~l~~~~r~~i~~~F~~-g~~~iLIaT~~~~~~~~~~~~~~~~ 339 (540)
|++++.+..++.+|.+. |..+..+||+|++.+|..+++.|++ |.++|||||+
T Consensus 638 ~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~--------------- 702 (797)
T 4a2q_A 638 AKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS--------------- 702 (797)
T ss_dssp ESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEEC---------------
T ss_pred ECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcC---------------
Confidence 99999999999999873 5566777999999999999999999 9999999999
Q ss_pred ccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEEeccccc
Q psy16633 340 KRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQ 398 (540)
Q Consensus 340 ~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e~ 398 (540)
++++|||+|++++||+||+|+|+..|+||+|| ||. +.|.+++|++..+.
T Consensus 703 --------~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ 751 (797)
T 4a2q_A 703 --------VADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (797)
T ss_dssp --------C-------CCCSEEEEESCCSCHHHHHTC---------CCCEEEEECCHHH
T ss_pred --------chhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcH
Confidence 99999999999999999999999999999999 998 88999999987654
No 31
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=3.6e-43 Score=380.33 Aligned_cols=321 Identities=15% Similarity=0.131 Sum_probs=229.4
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHH
Q psy16633 36 LGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELT 115 (540)
Q Consensus 36 ~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~ 115 (540)
+|. +|+++|..++|.+++|+ ++.++||||||++|++|++...+ .+..++|++||++||.|+++.+..++
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l--------~g~~vlVltPTreLA~Q~~e~~~~l~ 139 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNAL--------TGKGVHVVTVNDYLAQRDAENNRPLF 139 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHT--------TSSCCEEEESSHHHHHHHHHHHHHHH
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHH--------cCCcEEEEcCCHHHHHHHHHHHHHHH
Confidence 576 89999999999999998 99999999999999999986542 35689999999999999999999999
Q ss_pred hhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHH-HHHHhcCc------CCccCCccEEEEcCccccc-cCC---
Q psy16633 116 MKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARA-LAHLKAKT------LDLKSSLEIVIIDEADLVF-SFG--- 184 (540)
Q Consensus 116 ~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l-~~~l~~~~------~~~~~~l~~lViDEah~l~-~~~--- 184 (540)
..+ ++++..++|+.+.. ...+..+++|+|+||++| .+++..+. ..+ +++.++|+||||.|+ +.+
T Consensus 140 ~~l--gl~v~~i~GG~~~~--~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~-~~l~~lVlDEaD~mLiD~a~tp 214 (853)
T 2fsf_A 140 EFL--GLTVGINLPGMPAP--AKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQ-RKLHYALVDEVDSILIDEARTP 214 (853)
T ss_dssp HHT--TCCEEECCTTCCHH--HHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCC-CSCCEEEESCHHHHTTTTTTCE
T ss_pred Hhc--CCeEEEEeCCCCHH--HHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcc-cCCcEEEECchHHHHHhcCccc
Confidence 888 68888899987653 333345799999999999 78887652 334 889999999999998 443
Q ss_pred ------------cHHHHHHHHHhCCc--------------------cccee------------------------eEeee
Q psy16633 185 ------------YEDDMKAVLKFLPK--------------------LYQAI------------------------LASAT 208 (540)
Q Consensus 185 ------------~~~~l~~i~~~l~~--------------------~~q~i------------------------l~SAT 208 (540)
+...+..++..+++ ..|++ ++|||
T Consensus 215 LIiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat 294 (853)
T 2fsf_A 215 LIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPA 294 (853)
T ss_dssp EEEEEC--------------------------------------------------------------------------
T ss_pred ccccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcc
Confidence 56778888888864 45554 89999
Q ss_pred ccHHHHHHH-----HHhc--------CCCe-----------------------------EEEecCCCCCCCCCeE-----
Q psy16633 209 LSEDVLSLK-----HLIL--------RNPV-----------------------------ILKLEEPAIAPVSQLA----- 241 (540)
Q Consensus 209 l~~~~~~~~-----~~~l--------~~p~-----------------------------~i~~~~~~~~~~~~l~----- 241 (540)
.+.....+. ..++ .++. .+.+..... ....+.
T Consensus 295 ~~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~-tla~It~qnyf 373 (853)
T 2fsf_A 295 NIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQ-TLASITFQNYF 373 (853)
T ss_dssp --------------------------------------------------------------CCCCCE-EEEEEEHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceeccccc-ccceeehHHHH
Confidence 764222110 0000 1111 111111100 000011
Q ss_pred ------------------------------------------EEEEEcCcccHHHHHHHHHHh-cccCCcEEEEecChhh
Q psy16633 242 ------------------------------------------HYHILAQEDEKATILYTLLKL-NLVQGKTIIFVNTVDK 278 (540)
Q Consensus 242 ------------------------------------------~~~~~~~~~~k~~~l~~ll~~-~~~~~k~IIF~~s~~~ 278 (540)
..++.+...+|+..+...+.. ...+.++||||+|+..
T Consensus 374 r~Y~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~ 453 (853)
T 2fsf_A 374 RLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEK 453 (853)
T ss_dssp TTSSEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHH
T ss_pred hhhhhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHH
Confidence 113456677888888877753 3345689999999999
Q ss_pred HHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccccccccccCccccccccCCCCCc
Q psy16633 279 CYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFV 358 (540)
Q Consensus 279 ~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v 358 (540)
++.|+..|.+.|+++.++||.+.+.++..+.+.|+.| .|+|||| +++||+|++..
T Consensus 454 se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATn-----------------------mAgRGtDI~l~ 508 (853)
T 2fsf_A 454 SELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATN-----------------------MAGRGTDIVLG 508 (853)
T ss_dssp HHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEES-----------------------CCSSCSCCCTT
T ss_pred HHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecc-----------------------cccCCcCccCC
Confidence 9999999999999999999999888888888888888 6999999 99999999873
Q ss_pred -------------------------------------CEEEeCCCCCCcccchhccccccCCCCCceEEEEeccccc
Q psy16633 359 -------------------------------------SNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQ 398 (540)
Q Consensus 359 -------------------------------------~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e~ 398 (540)
.+||+|+.|.|...|.||+|||||.|.+|.+++|++..|.
T Consensus 509 gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 509 GSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp CCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSG
T ss_pred CchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHH
Confidence 5999999999999999999999999999999999997763
No 32
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=5e-42 Score=390.87 Aligned_cols=338 Identities=19% Similarity=0.158 Sum_probs=207.5
Q ss_pred HHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHH
Q psy16633 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKN 110 (540)
Q Consensus 31 ~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~ 110 (540)
....-.|+..||++|.++|+.+++|+++++.+|||||||++|++|+++.+.... ...+.++||++||++|+.|+++.
T Consensus 239 ~~~~l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~---~~~~~~vLvl~Pt~~L~~Q~~~~ 315 (936)
T 4a2w_A 239 KPPPVYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATKVPVYEQQKNV 315 (936)
T ss_dssp ---------CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCC---SSCCCCEEEECSSHHHHHHHHHH
T ss_pred CcccccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhcc---ccCCCeEEEEeCCHHHHHHHHHH
Confidence 333445788999999999999999999999999999999999999988774421 12378899999999999999999
Q ss_pred HHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCCcH-HHH
Q psy16633 111 IQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYE-DDM 189 (540)
Q Consensus 111 l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~~-~~l 189 (540)
++.++... ++.+..++|+.....+...+..+++|+|+||++|.+++..+.+.....+++|||||||++...+.. ..+
T Consensus 316 ~~~~~~~~--~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~ 393 (936)
T 4a2w_A 316 FKHHFERQ--GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLM 393 (936)
T ss_dssp HHHHHHTT--TCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHH
T ss_pred HHHHhccc--CceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHH
Confidence 99998765 678888888887666666666789999999999999998876633388999999999999876532 223
Q ss_pred HHHHHh----CCcccceeeEeeeccH-----------HHHHHHHH------------------hcCCCeEEEecCCC-CC
Q psy16633 190 KAVLKF----LPKLYQAILASATLSE-----------DVLSLKHL------------------ILRNPVILKLEEPA-IA 235 (540)
Q Consensus 190 ~~i~~~----l~~~~q~il~SATl~~-----------~~~~~~~~------------------~l~~p~~i~~~~~~-~~ 235 (540)
..+... ..+..|+++||||+.. .+..+... ++..|......... ..
T Consensus 394 ~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~ 473 (936)
T 4a2w_A 394 TRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIH 473 (936)
T ss_dssp HHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSC
T ss_pred HHHHHHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccC
Confidence 233322 1345789999999942 12121111 11222211110000 00
Q ss_pred CC----------------------CCeEEEEEE-----------------------------------------------
Q psy16633 236 PV----------------------SQLAHYHIL----------------------------------------------- 246 (540)
Q Consensus 236 ~~----------------------~~l~~~~~~----------------------------------------------- 246 (540)
.. ..+......
T Consensus 474 ~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~ 553 (936)
T 4a2w_A 474 NPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYN 553 (936)
T ss_dssp CHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 00 000000000
Q ss_pred -------------------------------------------------------cCcccHHHHHHHHHHhc---ccCCc
Q psy16633 247 -------------------------------------------------------AQEDEKATILYTLLKLN---LVQGK 268 (540)
Q Consensus 247 -------------------------------------------------------~~~~~k~~~l~~ll~~~---~~~~k 268 (540)
.....|...+..++... ..+.+
T Consensus 554 ~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~r 633 (936)
T 4a2w_A 554 DALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTR 633 (936)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCC
T ss_pred HHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCe
Confidence 00122444444455432 34579
Q ss_pred EEEEecChhhHHHHHHHHHhC------------CCceEEeCCCCCHHHHHHHHHHHhc-CCccEEEeCCCCccCCccccc
Q psy16633 269 TIIFVNTVDKCYKLKLYLEQF------------KISTCVLNSELPAKARCHAVYQFNQ-GLYDVIIASDEKALETPQINS 335 (540)
Q Consensus 269 ~IIF~~s~~~~~~l~~~L~~~------------~~~~~~l~~~l~~~~r~~i~~~F~~-g~~~iLIaT~~~~~~~~~~~~ 335 (540)
+||||++++.++.+..+|.+. |..+..+||+|++.+|..+++.|++ |.++|||||+
T Consensus 634 vLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~----------- 702 (936)
T 4a2w_A 634 TLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS----------- 702 (936)
T ss_dssp EEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEEC-----------
T ss_pred EEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeC-----------
Confidence 999999999999999999986 5556667899999999999999999 9999999999
Q ss_pred ccccccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEEeccccc
Q psy16633 336 TNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQ 398 (540)
Q Consensus 336 ~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e~ 398 (540)
++++|||+|+|++||+||+|+|+.+|+||+|| ||. ..|.++.+++..+.
T Consensus 703 ------------~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 703 ------------VADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (936)
T ss_dssp ------------C------CCCCSEEEEESCCSCSHHHHCC---------CCCEEEEESCHHH
T ss_pred ------------chhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCH
Confidence 99999999999999999999999999999999 998 78999999886543
No 33
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=9.5e-42 Score=388.47 Aligned_cols=310 Identities=20% Similarity=0.199 Sum_probs=242.3
Q ss_pred HCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHH
Q psy16633 35 KLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQEL 114 (540)
Q Consensus 35 ~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l 114 (540)
.++| .|+++|.++|+.+++|+++++.||||||||++|++|+...+ ..+.++||++|+++|+.|+++.+..+
T Consensus 35 ~~~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~--------~~g~~vlvl~PtraLa~Q~~~~l~~~ 105 (997)
T 4a4z_A 35 SWPF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAH--------RNMTKTIYTSPIKALSNQKFRDFKET 105 (997)
T ss_dssp CCSS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHH--------HTTCEEEEEESCGGGHHHHHHHHHTT
T ss_pred hCCC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHH--------hcCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 3577 59999999999999999999999999999999999988765 35789999999999999999999886
Q ss_pred HhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCCcHHHHHHHHH
Q psy16633 115 TMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLK 194 (540)
Q Consensus 115 ~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~ 194 (540)
+. ++.+..++|+.... ..++|+|+||++|.+++......+ .++++|||||||++.+++++..+..++.
T Consensus 106 ~~----~~~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~~~~~l-~~l~lvViDEaH~l~d~~~g~~~e~ii~ 173 (997)
T 4a4z_A 106 FD----DVNIGLITGDVQIN-------PDANCLIMTTEILRSMLYRGADLI-RDVEFVIFDEVHYVNDQDRGVVWEEVII 173 (997)
T ss_dssp C------CCEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHHTCSGG-GGEEEEEECCTTCCCTTCTTCCHHHHHH
T ss_pred cC----CCeEEEEeCCCccC-------CCCCEEEECHHHHHHHHHhCchhh-cCCCEEEEECcccccccchHHHHHHHHH
Confidence 43 46777788876533 457999999999999998876655 8999999999999999999999999999
Q ss_pred hCCcccceeeEeeeccHHHHH--HHHHhcCCCeEEEecCCCCCCCCCeEEEEE---------------------------
Q psy16633 195 FLPKLYQAILASATLSEDVLS--LKHLILRNPVILKLEEPAIAPVSQLAHYHI--------------------------- 245 (540)
Q Consensus 195 ~l~~~~q~il~SATl~~~~~~--~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~--------------------------- 245 (540)
.+++..|++++|||+++...- +.......+..+....... ..+.+++.
T Consensus 174 ~l~~~v~iIlLSAT~~n~~ef~~~l~~~~~~~~~vi~~~~r~---~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l 250 (997)
T 4a4z_A 174 MLPQHVKFILLSATVPNTYEFANWIGRTKQKNIYVISTPKRP---VPLEINIWAKKELIPVINQNSEFLEANFRKHKEIL 250 (997)
T ss_dssp HSCTTCEEEEEECCCTTHHHHHHHHHHHHTCCEEEEECSSCS---SCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHH
T ss_pred hcccCCCEEEEcCCCCChHHHHHHHhcccCCceEEEecCCCC---ccceEEEecCCcchhcccchhhhhHHHHHHHHHHh
Confidence 999999999999999865532 2222222222222111110 11111111
Q ss_pred ------------------------------------------------------------------EcCcccHHHHHHHH
Q psy16633 246 ------------------------------------------------------------------LAQEDEKATILYTL 259 (540)
Q Consensus 246 ------------------------------------------------------------------~~~~~~k~~~l~~l 259 (540)
......+...+...
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 330 (997)
T 4a4z_A 251 NGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNY 330 (997)
T ss_dssp C-----------------------------------------------------------------CCCCTTHHHHHHHH
T ss_pred hccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHH
Confidence 11122334444444
Q ss_pred HHhcccCCcEEEEecChhhHHHHHHHHHhCCC---------------------------------------ceEEeCCCC
Q psy16633 260 LKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKI---------------------------------------STCVLNSEL 300 (540)
Q Consensus 260 l~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~---------------------------------------~~~~l~~~l 300 (540)
+... ..+++||||+++..|+.++..|...++ ++..+||+|
T Consensus 331 l~~~-~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl 409 (997)
T 4a4z_A 331 LRKR-ELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGL 409 (997)
T ss_dssp HHHT-TCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTS
T ss_pred HHhC-CCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCC
Confidence 4433 356999999999999999999977655 578999999
Q ss_pred CHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEeCCCCC---------Ccc
Q psy16633 301 PAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPL---------DIQ 371 (540)
Q Consensus 301 ~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~---------s~~ 371 (540)
++.+|..+++.|.+|.++|||||+ ++++|||+|+ ..||+++.|. |..
T Consensus 410 ~~~~R~~v~~~F~~G~~kVLvAT~-----------------------~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~ 465 (997)
T 4a4z_A 410 LPIVKELIEILFSKGFIKVLFATE-----------------------TFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPG 465 (997)
T ss_dssp CHHHHHHHHHHHHTTCCSEEEECT-----------------------HHHHSCCCCC-SEEEESCSEEEETTEEEECCHH
T ss_pred CHHHHHHHHHHHHCCCCcEEEEch-----------------------HhhCCCCCCC-ceEEEeccccccCccCCCCCHH
Confidence 999999999999999999999999 9999999999 5555555554 999
Q ss_pred cchhccccccCCC--CCceEEEEe
Q psy16633 372 CYIHRAGRTARGK--NQGTALSFV 393 (540)
Q Consensus 372 ~yiqr~GRagR~g--~~g~~i~~~ 393 (540)
+|+||+|||||.| ..|.++.++
T Consensus 466 ~y~Qr~GRAGR~G~~~~G~vi~l~ 489 (997)
T 4a4z_A 466 EFTQMAGRAGRRGLDSTGTVIVMA 489 (997)
T ss_dssp HHHHHHGGGCCTTTCSSEEEEEEC
T ss_pred HHhHHhcccccCCCCcceEEEEec
Confidence 9999999999998 456677776
No 34
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.4e-41 Score=360.84 Aligned_cols=323 Identities=19% Similarity=0.190 Sum_probs=245.7
Q ss_pred CChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcC
Q psy16633 40 EPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCS 119 (540)
Q Consensus 40 ~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~ 119 (540)
.|+++|.++++.++++ ++++.+|||+|||++++++++..+.. .+.++||++|+++|+.|+.+.+.+++..
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~-------~~~~~liv~P~~~L~~q~~~~~~~~~~~-- 78 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK-------YGGKVLMLAPTKPLVLQHAESFRRLFNL-- 78 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH-------SCSCEEEECSSHHHHHHHHHHHHHHBCS--
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc-------CCCeEEEEECCHHHHHHHHHHHHHHhCc--
Confidence 6999999999999999 99999999999999999999887642 4678999999999999999999988632
Q ss_pred CCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCCcHHHHHHHHHhCCcc
Q psy16633 120 RDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199 (540)
Q Consensus 120 ~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~ 199 (540)
....+..+.|+....... .....++|+|+||+.+.+.+....+.+ ..+++||+||||++.+......+...+....+.
T Consensus 79 ~~~~v~~~~g~~~~~~~~-~~~~~~~ivv~T~~~l~~~~~~~~~~~-~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~ 156 (494)
T 1wp9_A 79 PPEKIVALTGEKSPEERS-KAWARAKVIVATPQTIENDLLAGRISL-EDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKN 156 (494)
T ss_dssp CGGGEEEECSCSCHHHHH-HHHHHCSEEEECHHHHHHHHHTTSCCT-TSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSS
T ss_pred chhheEEeeCCcchhhhh-hhccCCCEEEecHHHHHHHHhcCCcch-hhceEEEEECCcccCCCCcHHHHHHHHHhcCCC
Confidence 234677777776544332 233468999999999999988776665 889999999999998665444555555555567
Q ss_pred cceeeEeeeccHH---HHHHHHHhcCCCeEEEecCCC-C---CCCCCeEEEEEEc-------------------------
Q psy16633 200 YQAILASATLSED---VLSLKHLILRNPVILKLEEPA-I---APVSQLAHYHILA------------------------- 247 (540)
Q Consensus 200 ~q~il~SATl~~~---~~~~~~~~l~~p~~i~~~~~~-~---~~~~~l~~~~~~~------------------------- 247 (540)
.++++||||+... +..+.......+......... . .............
T Consensus 157 ~~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (494)
T 1wp9_A 157 PLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAET 236 (494)
T ss_dssp CCEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999743 333333322221111111000 0 0000000000000
Q ss_pred --------------------------------------------------------------------------------
Q psy16633 248 -------------------------------------------------------------------------------- 247 (540)
Q Consensus 248 -------------------------------------------------------------------------------- 247 (540)
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 316 (494)
T 1wp9_A 237 GLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKAS 316 (494)
T ss_dssp TSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred ccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhh
Confidence
Q ss_pred -----------------------CcccHHHHHHHHHHhc---ccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCC---
Q psy16633 248 -----------------------QEDEKATILYTLLKLN---LVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNS--- 298 (540)
Q Consensus 248 -----------------------~~~~k~~~l~~ll~~~---~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~--- 298 (540)
....|...+..++... ..++++||||++++.+..++..|.+.|+.+..+||
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~ 396 (494)
T 1wp9_A 317 KEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQAS 396 (494)
T ss_dssp HHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSC
T ss_pred hhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEecccc
Confidence 1233445555555542 35779999999999999999999999999999999
Q ss_pred -----CCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEeCCCCCCcccc
Q psy16633 299 -----ELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCY 373 (540)
Q Consensus 299 -----~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~y 373 (540)
+++..+|..+++.|++|..+|||||+ ++++|+|+|++++||+||+|+|+..|
T Consensus 397 ~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~-----------------------~~~~Gldl~~~~~Vi~~d~~~~~~~~ 453 (494)
T 1wp9_A 397 KENDRGLSQREQKLILDEFARGEFNVLVATS-----------------------VGEEGLDVPEVDLVVFYEPVPSAIRS 453 (494)
T ss_dssp C-------CCHHHHHHHHHHHTSCSEEEECG-----------------------GGGGGGGSTTCCEEEESSCCHHHHHH
T ss_pred ccccccCCHHHHHHHHHHHhcCCceEEEECC-----------------------ccccCCCchhCCEEEEeCCCCCHHHH
Confidence 99999999999999999999999999 99999999999999999999999999
Q ss_pred hhccccccCCCCCceEEEEeccccc
Q psy16633 374 IHRAGRTARGKNQGTALSFVSLREQ 398 (540)
Q Consensus 374 iqr~GRagR~g~~g~~i~~~~~~e~ 398 (540)
+||+||+||.|+ |.++.|+++...
T Consensus 454 ~Qr~GR~~R~g~-g~~~~l~~~~t~ 477 (494)
T 1wp9_A 454 IQRRGRTGRHMP-GRVIILMAKGTR 477 (494)
T ss_dssp HHHHTTSCSCCC-SEEEEEEETTSH
T ss_pred HHHHhhccCCCC-ceEEEEEecCCH
Confidence 999999999998 999999987653
No 35
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=2.9e-41 Score=365.72 Aligned_cols=323 Identities=15% Similarity=0.150 Sum_probs=253.8
Q ss_pred HCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHH
Q psy16633 35 KLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQEL 114 (540)
Q Consensus 35 ~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l 114 (540)
.+|+ +|+++|..++|.+++|+ ++.++||+|||++|.+|++...+ .+..++|++||++||.|.++++..+
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL--------~g~~v~VvTpTreLA~Qdae~m~~l 175 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNAL--------AGNGVHIVTVNDYLAKRDSEWMGRV 175 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHT--------TTSCEEEEESSHHHHHHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHH--------hCCCeEEEeCCHHHHHHHHHHHHHH
Confidence 4799 99999999999999998 99999999999999999975543 3567999999999999999999999
Q ss_pred HhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHH-HHHHhcC------cCCccCCccEEEEcCccccc-cC---
Q psy16633 115 TMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARA-LAHLKAK------TLDLKSSLEIVIIDEADLVF-SF--- 183 (540)
Q Consensus 115 ~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l-~~~l~~~------~~~~~~~l~~lViDEah~l~-~~--- 183 (540)
+..+ ++++..+.|+.+...+ ....+++|+|+||++| .+++..+ .+.+ +.+.++||||||.|+ +.
T Consensus 176 ~~~l--GLsv~~i~gg~~~~~r--~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~l-r~l~~lIVDEaDsmLiDeart 250 (922)
T 1nkt_A 176 HRFL--GLQVGVILATMTPDER--RVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQ-RGHHYAIVDEVDSILIDEART 250 (922)
T ss_dssp HHHT--TCCEEECCTTCCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCC-CCCCEEEETTHHHHHTTGGGS
T ss_pred Hhhc--CCeEEEEeCCCCHHHH--HHhcCCCEEEECchHhhHHHHHhhhhccHhhhcc-CCCCEEEEeChHHHHHhcCcc
Confidence 9988 6888889888764332 3334689999999999 7887664 2344 789999999999988 32
Q ss_pred ------------CcHHHHHHHHHhCC---------ccccee-----------------eEeeeccHHHH---HHH--HHh
Q psy16633 184 ------------GYEDDMKAVLKFLP---------KLYQAI-----------------LASATLSEDVL---SLK--HLI 220 (540)
Q Consensus 184 ------------~~~~~l~~i~~~l~---------~~~q~i-----------------l~SATl~~~~~---~~~--~~~ 220 (540)
+|...+..++..++ +..|++ ++|||.++... ... ..+
T Consensus 251 PLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l 330 (922)
T 1nkt_A 251 PLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKEL 330 (922)
T ss_dssp CEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHH
T ss_pred ceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHH
Confidence 47789999999998 678888 99999875332 221 111
Q ss_pred cC--------CCeEEEecCCC----------------------CCC-C-----CCeE-----------------------
Q psy16633 221 LR--------NPVILKLEEPA----------------------IAP-V-----SQLA----------------------- 241 (540)
Q Consensus 221 l~--------~p~~i~~~~~~----------------------~~~-~-----~~l~----------------------- 241 (540)
+. ++.++.+++.. ... . ..+.
T Consensus 331 ~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~ 410 (922)
T 1nkt_A 331 FSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAA 410 (922)
T ss_dssp CCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHH
T ss_pred hhcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHH
Confidence 11 22222222100 000 0 0000
Q ss_pred ------------------------EEEEEcCcccHHHHHHHHHHh-cccCCcEEEEecChhhHHHHHHHHHhCCCceEEe
Q psy16633 242 ------------------------HYHILAQEDEKATILYTLLKL-NLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVL 296 (540)
Q Consensus 242 ------------------------~~~~~~~~~~k~~~l~~ll~~-~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l 296 (540)
..++.+...+|+..+...+.. ...+.++||||+|+..++.|+..|.+.|+++.++
T Consensus 411 Ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vL 490 (922)
T 1nkt_A 411 ELHEIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVL 490 (922)
T ss_dssp HHHHHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEE
T ss_pred HHHHHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEe
Confidence 113445667788777776653 2345689999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccccccccccCccccccccCCCCCc------------------
Q psy16633 297 NSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFV------------------ 358 (540)
Q Consensus 297 ~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v------------------ 358 (540)
||.+.+.++..+.+.|+.| .|+|||| +++||+|++.+
T Consensus 491 nak~~~rEa~iia~agr~G--~VtIATn-----------------------mAgRGtDI~l~~~~~~~~~~~~~~~~~~~ 545 (922)
T 1nkt_A 491 NAKYHEQEATIIAVAGRRG--GVTVATN-----------------------MAGRGTDIVLGGNVDFLTDQRLRERGLDP 545 (922)
T ss_dssp CSSCHHHHHHHHHTTTSTT--CEEEEET-----------------------TCSTTCCCCTTCCHHHHHHHHHHHTTCCT
T ss_pred cCChhHHHHHHHHhcCCCC--eEEEecc-----------------------hhhcCccccCCCCHHHHHHHHHhhccccc
Confidence 9998877777777778777 7999999 99999999975
Q ss_pred ----------------------------------CEEEeCCCCCCcccchhccccccCCCCCceEEEEeccccc
Q psy16633 359 ----------------------------------SNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQ 398 (540)
Q Consensus 359 ----------------------------------~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e~ 398 (540)
.+||+|+.|.|...|.||+|||||.|.+|.+++|++..|.
T Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 546 VETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred cccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 4999999999999999999999999999999999997664
No 36
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=1.4e-42 Score=386.68 Aligned_cols=325 Identities=20% Similarity=0.246 Sum_probs=225.9
Q ss_pred CChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHH-HHHHHHHHhhc
Q psy16633 40 EPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQL-HKNIQELTMKC 118 (540)
Q Consensus 40 ~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~-~~~l~~l~~~~ 118 (540)
.|+++|.++++.+++|+++++.+|||+|||++|++|+++.+..... ...+.++||++|+++|+.|+ .+.++.++..
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~--~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~- 83 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKK--ASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK- 83 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHH--HTCCCCBCCEESCSHHHHHHHHHTHHHHHTT-
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc--cCCCCeEEEEECCHHHHHHHHHHHHHHHcCc-
Confidence 7999999999999999999999999999999999999998866321 13447899999999999999 9999998754
Q ss_pred CCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHh------cCcCCccCCccEEEEcCccccccCC-cHHHHHH
Q psy16633 119 SRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLK------AKTLDLKSSLEIVIIDEADLVFSFG-YEDDMKA 191 (540)
Q Consensus 119 ~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~------~~~~~~~~~l~~lViDEah~l~~~~-~~~~l~~ 191 (540)
.+.+..+.|+.........+...++|+|+||++|.+.+. ...+.+ ..+++|||||||++...+ |...+..
T Consensus 84 --~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~-~~~~lvViDEaH~~~~~~~~~~i~~~ 160 (699)
T 4gl2_A 84 --WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQL-SDFSLIIIDECHHTNKEAVYNNIMRH 160 (699)
T ss_dssp --TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCG-GGCSEEEEESGGGCBTTBSSCSHHHH
T ss_pred --CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceec-ccCcEEEEECccccCccchHHHHHHH
Confidence 478888888887776666666889999999999999883 334555 889999999999886543 3333332
Q ss_pred HHHhC-------------CcccceeeEeeeccHH-----------HHHHHHHhcCCCeEEEecCC--C--CCCCCCeEEE
Q psy16633 192 VLKFL-------------PKLYQAILASATLSED-----------VLSLKHLILRNPVILKLEEP--A--IAPVSQLAHY 243 (540)
Q Consensus 192 i~~~l-------------~~~~q~il~SATl~~~-----------~~~~~~~~l~~p~~i~~~~~--~--~~~~~~l~~~ 243 (540)
++... .+..++++||||+... +..+.... ....+...... . .........+
T Consensus 161 ~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l-~~~~i~~~~~~~~~l~~~~~~p~~~~ 239 (699)
T 4gl2_A 161 YLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANL-DAFTIKTVKENLDQLKNQIQEPCKKF 239 (699)
T ss_dssp HHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHH-TCSCCCCCCTTHHHHHHHSCCCEEEE
T ss_pred HHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhc-CCCEEEeecCchHHHhhhcCCCceEE
Confidence 22211 1456899999999862 22221111 11000000000 0 0000000000
Q ss_pred EEEcC---------------------------------------------------------------------------
Q psy16633 244 HILAQ--------------------------------------------------------------------------- 248 (540)
Q Consensus 244 ~~~~~--------------------------------------------------------------------------- 248 (540)
.....
T Consensus 240 ~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 319 (699)
T 4gl2_A 240 AIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRM 319 (699)
T ss_dssp EEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCH
T ss_pred EEcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000
Q ss_pred -----------------------------------------------------------cccHHHHHHHHHHhcc---c-
Q psy16633 249 -----------------------------------------------------------EDEKATILYTLLKLNL---V- 265 (540)
Q Consensus 249 -----------------------------------------------------------~~~k~~~l~~ll~~~~---~- 265 (540)
...|...+..++.... .
T Consensus 320 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~ 399 (699)
T 4gl2_A 320 IDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEE 399 (699)
T ss_dssp HHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 0011111122222111 1
Q ss_pred CCcEEEEecChhhHHHHHHHHHhC------CCceEEeCCC--------CCHHHHHHHHHHHhcCCccEEEeCCCCccCCc
Q psy16633 266 QGKTIIFVNTVDKCYKLKLYLEQF------KISTCVLNSE--------LPAKARCHAVYQFNQGLYDVIIASDEKALETP 331 (540)
Q Consensus 266 ~~k~IIF~~s~~~~~~l~~~L~~~------~~~~~~l~~~--------l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~ 331 (540)
.+++||||++++.++.++..|.+. |+++..+||+ |++.+|..+++.|++|.++|||||+
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~------- 472 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATT------- 472 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEEC-------
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEcc-------
Confidence 679999999999999999999987 8999999999 9999999999999999999999999
Q ss_pred ccccccccccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEEecccc
Q psy16633 332 QINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLRE 397 (540)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e 397 (540)
++++|||+|++++||+||+|+|+.+|+||+||+||. |.+++++...+
T Consensus 473 ----------------~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~---g~~~~l~~~~~ 519 (699)
T 4gl2_A 473 ----------------VAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARAD---ESTYVLVAHSG 519 (699)
T ss_dssp ----------------SCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSS---SCEEEEEEESS
T ss_pred ----------------ccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCC---CceEEEEEeCC
Confidence 999999999999999999999999999999997654 45566665433
No 37
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=2.7e-40 Score=381.85 Aligned_cols=325 Identities=18% Similarity=0.197 Sum_probs=255.1
Q ss_pred ccCCCCHHHHHHHH-HCCCCCChHHHHHHHHHHhc----CC--cEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeE
Q psy16633 21 FTFTLFCIPLQAIA-KLGWLEPTLIQERAIPLILQ----NK--DVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETK 93 (540)
Q Consensus 21 ~~~~L~~~i~~~l~-~~g~~~pt~~Q~~ai~~il~----gk--d~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~ 93 (540)
+.++++....+.+. .+|| .|||+|.+||+.+++ |+ |++++++||+|||.+|+.+++..+ ..+.+
T Consensus 584 ~~~~~~~~~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~--------~~g~~ 654 (1151)
T 2eyq_A 584 FAFKHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV--------DNHKQ 654 (1151)
T ss_dssp CCCCCCHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHH--------TTTCE
T ss_pred CCCCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHH--------HhCCe
Confidence 35677888777775 4688 589999999999987 66 999999999999999999988765 35679
Q ss_pred EEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchh----hhhCCCCEEEEChHHHHHHHhcCcCCccCCc
Q psy16633 94 ALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEP----LLVERPDIVVATPARALAHLKAKTLDLKSSL 169 (540)
Q Consensus 94 vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~----~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l 169 (540)
++|++||++|+.|+++.+.+.+... .+++..+++......... ...+.++|+|+||+.+. ..+.+ .++
T Consensus 655 vlvlvPt~~La~Q~~~~~~~~~~~~--~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~-~~l 726 (1151)
T 2eyq_A 655 VAVLVPTTLLAQQHYDNFRDRFANW--PVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKF-KDL 726 (1151)
T ss_dssp EEEECSSHHHHHHHHHHHHHHSTTT--TCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCC-SSE
T ss_pred EEEEechHHHHHHHHHHHHHHhhcC--CCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccc-ccc
Confidence 9999999999999999999877644 567777766544333222 22346999999998652 33445 889
Q ss_pred cEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcCc
Q psy16633 170 EIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQE 249 (540)
Q Consensus 170 ~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~ 249 (540)
++|||||||++ + ......+..++...++++||||+.+....+....+.++..+...... ...+..++...
T Consensus 727 ~lvIiDEaH~~---g--~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~~---r~~i~~~~~~~-- 796 (1151)
T 2eyq_A 727 GLLIVDEEHRF---G--VRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR---RLAVKTFVREY-- 796 (1151)
T ss_dssp EEEEEESGGGS---C--HHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCCB---CBCEEEEEEEC--
T ss_pred ceEEEechHhc---C--hHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecCCCC---ccccEEEEecC--
Confidence 99999999974 2 33455555666678999999999877766666666655444322111 12233433332
Q ss_pred ccHHHHHHHHHHhcccCCcEEEEecChhhHHHHHHHHHhC--CCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCc
Q psy16633 250 DEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQF--KISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327 (540)
Q Consensus 250 ~~k~~~l~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~--~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~ 327 (540)
++......+++....+++++|||++++.++.++..|++. +.++..+||+|++.+|..+++.|++|.++|||||+
T Consensus 797 -~~~~i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~--- 872 (1151)
T 2eyq_A 797 -DSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT--- 872 (1151)
T ss_dssp -CHHHHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESS---
T ss_pred -CHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECC---
Confidence 233444455554446789999999999999999999987 78999999999999999999999999999999999
Q ss_pred cCCcccccccccccccCccccccccCCCCCcCEEEeCCC-CCCcccchhccccccCCCCCceEEEEeccc
Q psy16633 328 LETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDF-PLDIQCYIHRAGRTARGKNQGTALSFVSLR 396 (540)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~-p~s~~~yiqr~GRagR~g~~g~~i~~~~~~ 396 (540)
++++|+|+|++++||+++. +.+..+|+||+||+||.|+.|.|++++.+.
T Consensus 873 --------------------v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 873 --------------------IIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp --------------------TTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred --------------------cceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 9999999999999999998 468899999999999999999999998764
No 38
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.2e-41 Score=376.35 Aligned_cols=319 Identities=18% Similarity=0.233 Sum_probs=237.7
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHhcC------CcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCc
Q psy16633 27 CIPLQAIAKLGWLEPTLIQERAIPLILQN------KDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPS 100 (540)
Q Consensus 27 ~~i~~~l~~~g~~~pt~~Q~~ai~~il~g------kd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt 100 (540)
..+.+.+..+|| .||++|+++|+.++++ ++++++||||||||++|++|+++.+. .+.+++|++||
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~--------~g~qvlvlaPt 426 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYE--------AGFQTAFMVPT 426 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHH--------HTSCEEEECSC
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHH--------cCCeEEEEeCc
Confidence 445556688999 9999999999999876 58999999999999999999998873 36789999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchh----hhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcC
Q psy16633 101 KELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEP----LLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDE 176 (540)
Q Consensus 101 ~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~----~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDE 176 (540)
++|+.|+++.+..++... ++++..++|+........ ...+.++|+|+||+.+.+ ...+ .+++++|+||
T Consensus 427 r~La~Q~~~~l~~~~~~~--gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~-~~l~lVVIDE 498 (780)
T 1gm5_A 427 SILAIQHYRRTVESFSKF--NIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHF-KNLGLVIIDE 498 (780)
T ss_dssp HHHHHHHHHHHHHHHTCS--SCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCC-SCCCEEEEES
T ss_pred HHHHHHHHHHHHHHhhhc--CceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhc-cCCceEEecc
Confidence 999999999999998655 678888888876554332 223469999999998743 2344 8899999999
Q ss_pred ccccccCCcHHHHHHHHHhCCcccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcCcccHHHHH
Q psy16633 177 ADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATIL 256 (540)
Q Consensus 177 ah~l~~~~~~~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~~~k~~~l 256 (540)
+|++ |+.. ...+.......++++||||+.+....+.. ..+.....+.... .....+..+ .........++
T Consensus 499 aHr~---g~~q--r~~l~~~~~~~~vL~mSATp~p~tl~~~~--~g~~~~s~i~~~p-~~r~~i~~~--~~~~~~~~~l~ 568 (780)
T 1gm5_A 499 QHRF---GVKQ--REALMNKGKMVDTLVMSATPIPRSMALAF--YGDLDVTVIDEMP-PGRKEVQTM--LVPMDRVNEVY 568 (780)
T ss_dssp CCCC----------CCCCSSSSCCCEEEEESSCCCHHHHHHH--TCCSSCEEECCCC-SSCCCCEEC--CCCSSTHHHHH
T ss_pred cchh---hHHH--HHHHHHhCCCCCEEEEeCCCCHHHHHHHH--hCCcceeeeeccC-CCCcceEEE--EeccchHHHHH
Confidence 9975 2221 11122223468999999998775544333 2222112222110 111122222 22233333344
Q ss_pred HHHHHhcccCCcEEEEecChh--------hHHHHHHHHHh---CCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCC
Q psy16633 257 YTLLKLNLVQGKTIIFVNTVD--------KCYKLKLYLEQ---FKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE 325 (540)
Q Consensus 257 ~~ll~~~~~~~k~IIF~~s~~--------~~~~l~~~L~~---~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~ 325 (540)
..+.+....+++++|||++++ .+..++..|.+ .++.+..+||+|++.+|..+++.|++|+++|||||+
T Consensus 569 ~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~- 647 (780)
T 1gm5_A 569 EFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTT- 647 (780)
T ss_dssp HHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSS-
T ss_pred HHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECC-
Confidence 444433345678999999764 47788888877 378899999999999999999999999999999999
Q ss_pred CccCCcccccccccccccCccccccccCCCCCcCEEEeCCCCC-CcccchhccccccCCCCCceEEEEecc
Q psy16633 326 KALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPL-DIQCYIHRAGRTARGKNQGTALSFVSL 395 (540)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~-s~~~yiqr~GRagR~g~~g~~i~~~~~ 395 (540)
++++|+|+|++++||++|.|. +...|.||+||+||.|+.|.|++++.+
T Consensus 648 ----------------------vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~ 696 (780)
T 1gm5_A 648 ----------------------VIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGD 696 (780)
T ss_dssp ----------------------CCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCS
T ss_pred ----------------------CCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECC
Confidence 999999999999999999996 688899999999999999999999874
No 39
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.1e-40 Score=395.32 Aligned_cols=341 Identities=15% Similarity=0.174 Sum_probs=257.9
Q ss_pred CCCHHHHHHHHHCCCCCChHHHHHHHHHHhcC-CcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHH
Q psy16633 24 TLFCIPLQAIAKLGWLEPTLIQERAIPLILQN-KDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKE 102 (540)
Q Consensus 24 ~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~g-kd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~ 102 (540)
.|.....+++...+|.+++|+|.++++.++++ +|++++||||||||++|.+|+++.+.+ ..+.++||++|+++
T Consensus 910 ~L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~------~~~~kavyi~P~ra 983 (1724)
T 4f92_B 910 ALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQ------SSEGRCVYITPMEA 983 (1724)
T ss_dssp GSCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHH------CTTCCEEEECSCHH
T ss_pred cccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHh------CCCCEEEEEcChHH
Confidence 45677888888889999999999999999864 679999999999999999999999876 35678999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCc-CCccCCccEEEEcCccccc
Q psy16633 103 LCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKT-LDLKSSLEIVIIDEADLVF 181 (540)
Q Consensus 103 La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~-~~~~~~l~~lViDEah~l~ 181 (540)
||.|+++.+...+... .++++..++|+...+.. ...+++|+||||+++..++++.. .....++++||+||+|++.
T Consensus 984 La~q~~~~~~~~f~~~-~g~~V~~ltGd~~~~~~---~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~ 1059 (1724)
T 4f92_B 984 LAEQVYMDWYEKFQDR-LNKKVVLLTGETSTDLK---LLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIG 1059 (1724)
T ss_dssp HHHHHHHHHHHHHTTT-SCCCEEECCSCHHHHHH---HHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGG
T ss_pred HHHHHHHHHHHHhchh-cCCEEEEEECCCCcchh---hcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcC
Confidence 9999999988754321 26788888887653322 23568999999999877776532 2223789999999999887
Q ss_pred cCCcHHHHHHHHH-------hCCcccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcCcccH--
Q psy16633 182 SFGYEDDMKAVLK-------FLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEK-- 252 (540)
Q Consensus 182 ~~~~~~~l~~i~~-------~l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~~~k-- 252 (540)
+ .++..++.++. .+++..|+++||||+++..+-..++.........+..... +..+..+....+....
T Consensus 1060 d-~rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~~dla~WL~~~~~~~~~~~~~~R--PvpL~~~i~~~~~~~~~~ 1136 (1724)
T 4f92_B 1060 G-ENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVR--PVPLELHIQGFNISHTQT 1136 (1724)
T ss_dssp S-TTHHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTHHHHHHHHTCCSTTEEECCGGGC--SSCEEEEEEEECCCSHHH
T ss_pred C-CCCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCHHHHHHHhCCCCCCeEEeCCCCC--CCCeEEEEEeccCCCchh
Confidence 6 45655555443 3567789999999998754433344343333333333221 2234444443332222
Q ss_pred -----HHHHHHHHHhcccCCcEEEEecChhhHHHHHHHHHhC----------------------------------CCce
Q psy16633 253 -----ATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQF----------------------------------KIST 293 (540)
Q Consensus 253 -----~~~l~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~----------------------------------~~~~ 293 (540)
...++..+......+++||||+|+..|+.++..|... ..++
T Consensus 1137 ~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GI 1216 (1724)
T 4f92_B 1137 RLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGV 1216 (1724)
T ss_dssp HHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTE
T ss_pred hhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCE
Confidence 1223344444556789999999999998887665321 2368
Q ss_pred EEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEe----CC----
Q psy16633 294 CVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVIN----FD---- 365 (540)
Q Consensus 294 ~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~----~d---- 365 (540)
+.+|++|++.+|..+.+.|++|.++|||||+ ++++|||+|++.+||. ||
T Consensus 1217 a~hHagL~~~~R~~VE~lF~~G~i~VLvaT~-----------------------tlA~GVnlPa~~VVI~~~~~~dg~~~ 1273 (1724)
T 4f92_B 1217 GYLHEGLSPMERRLVEQLFSSGAIQVVVASR-----------------------SLCWGMNVAAHLVIIMDTQYYNGKIH 1273 (1724)
T ss_dssp EEECTTSCHHHHHHHHHHHHHTSBCEEEEEG-----------------------GGSSSCCCCBSEEEEECSEEEETTTT
T ss_pred EEECCCCCHHHHHHHHHHHHCCCCeEEEECh-----------------------HHHcCCCCCccEEEEecCccccCccc
Confidence 8999999999999999999999999999999 9999999999999983 33
Q ss_pred --CCCCcccchhccccccCCCC--CceEEEEeccccccc
Q psy16633 366 --FPLDIQCYIHRAGRTARGKN--QGTALSFVSLREQDL 400 (540)
Q Consensus 366 --~p~s~~~yiqr~GRagR~g~--~g~~i~~~~~~e~~~ 400 (540)
.|.+..+|+||+|||||.|. .|.|++++.+.+...
T Consensus 1274 ~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~ 1312 (1724)
T 4f92_B 1274 AYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDF 1312 (1724)
T ss_dssp EEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHH
T ss_pred ccCCCCHHHHHHhhccccCCCCCCceEEEEEecchHHHH
Confidence 36789999999999999997 688999888766543
No 40
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=1.8e-42 Score=376.30 Aligned_cols=306 Identities=16% Similarity=0.180 Sum_probs=231.0
Q ss_pred CCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHH
Q psy16633 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKE 102 (540)
Q Consensus 23 ~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~ 102 (540)
+++++++.+++... ...|+|+|+.++|.+++|+|+++.||||||||++|++|+++.+.. .+.++||++||++
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~-------~~~~vLvl~Ptre 226 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK-------RRLRTLILAPTRV 226 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-------TTCCEEEEESSHH
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh-------CCCeEEEEcChHH
Confidence 45677766666554 478999999999999999999999999999999999999999865 4679999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCcccccc
Q psy16633 103 LCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFS 182 (540)
Q Consensus 103 La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~ 182 (540)
||.|+++.+..+ .+. ..+.. . ......+..+.++|.+.+...+.... .+ .++++|||||||++ +
T Consensus 227 La~Qi~~~l~~~------~v~---~~~~~-l---~~~~tp~~~i~~~t~~~l~~~l~~~~-~l-~~~~~iViDEah~~-~ 290 (618)
T 2whx_A 227 VAAEMEEALRGL------PIR---YQTPA-V---KSDHTGREIVDLMCHATFTTRLLSST-RV-PNYNLIVMDEAHFT-D 290 (618)
T ss_dssp HHHHHHHHTTTS------CEE---ECCTT-S---SCCCCSSSCEEEEEHHHHHHHHHHCS-SC-CCCSEEEEESTTCC-S
T ss_pred HHHHHHHHhcCC------cee---Eeccc-c---eeccCCCceEEEEChHHHHHHHhccc-cc-cCCeEEEEECCCCC-C
Confidence 999999877621 222 11111 0 00111344577889998887776553 33 88999999999988 6
Q ss_pred CCcHHHHHHHHHhCC-cccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcCcccHHHHHHHHHH
Q psy16633 183 FGYEDDMKAVLKFLP-KLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLK 261 (540)
Q Consensus 183 ~~~~~~l~~i~~~l~-~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~ll~ 261 (540)
.++...+..+...++ ...|+++||||++..+..+.. .++..+.+.... +......++..+.+
T Consensus 291 ~~~~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~~--------------~~~~~~~ll~~l~~ 353 (618)
T 2whx_A 291 PCSVAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIEREI--------------PERSWNTGFDWITD 353 (618)
T ss_dssp HHHHHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECCC--------------CSSCCSSSCHHHHH
T ss_pred ccHHHHHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeecccC--------------CHHHHHHHHHHHHh
Confidence 677888888887775 578999999999876543221 244444433211 00000111222222
Q ss_pred hcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCccccccccccc
Q psy16633 262 LNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKR 341 (540)
Q Consensus 262 ~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~ 341 (540)
..+++||||++++.|+.++..|.+.++.+..+||+ +|..+++.|++|..+||||||
T Consensus 354 ---~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTd----------------- 409 (618)
T 2whx_A 354 ---YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTD----------------- 409 (618)
T ss_dssp ---CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECG-----------------
T ss_pred ---CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECc-----------------
Confidence 36799999999999999999999999999999985 688899999999999999999
Q ss_pred ccCccccccccCCCCCcCEE--------------------EeCCCCCCcccchhccccccCCCC-CceEEEEec---ccc
Q psy16633 342 KRDKESGVSRGIDFQFVSNV--------------------INFDFPLDIQCYIHRAGRTARGKN-QGTALSFVS---LRE 397 (540)
Q Consensus 342 ~~~~~~~~~~GiD~~~v~~V--------------------i~~d~p~s~~~yiqr~GRagR~g~-~g~~i~~~~---~~e 397 (540)
++++|+|++ +++| |+||.|.|.++|+||+|||||.|. .|.+++|+. +.+
T Consensus 410 ------v~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d 482 (618)
T 2whx_A 410 ------ISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKND 482 (618)
T ss_dssp ------GGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCC
T ss_pred ------HHHcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhh
Confidence 999999997 9888 778889999999999999999975 899999997 566
Q ss_pred ccc
Q psy16633 398 QDL 400 (540)
Q Consensus 398 ~~~ 400 (540)
...
T Consensus 483 ~~~ 485 (618)
T 2whx_A 483 EDH 485 (618)
T ss_dssp TTC
T ss_pred HHH
Confidence 555
No 41
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=4.6e-40 Score=390.05 Aligned_cols=331 Identities=16% Similarity=0.246 Sum_probs=250.7
Q ss_pred CCCCChHHHHHHHHHHhc-CCcEEEEcCCCchHHHHHHHHHHHHHHhhcc---cccCCCeEEEEEcCcHHHHHHHHHHHH
Q psy16633 37 GWLEPTLIQERAIPLILQ-NKDVLVRARTGSGKTGAFAIPMIQKIINLKQ---TAQVQETKALVLSPSKELCNQLHKNIQ 112 (540)
Q Consensus 37 g~~~pt~~Q~~ai~~il~-gkd~li~a~TGsGKT~a~~ipil~~l~~~~~---~~~~~~~~vlil~Pt~~La~q~~~~l~ 112 (540)
||++++++|.+++|.++. ++|++++||||||||++|.+|+++.+.+... .....+.++||++|+++||.|+++.+.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 899999999999999885 7899999999999999999999999976422 112457899999999999999999999
Q ss_pred HHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcC-CccCCccEEEEcCccccccCCcHHHHHH
Q psy16633 113 ELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTL-DLKSSLEIVIIDEADLVFSFGYEDDMKA 191 (540)
Q Consensus 113 ~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~-~~~~~l~~lViDEah~l~~~~~~~~l~~ 191 (540)
+.+... ++++..++|+.....+. ...++|+|+||+++..++++... .+.+.+++|||||+|++-+ .++..++.
T Consensus 156 ~~~~~~--gi~V~~~tGd~~~~~~~---~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~ 229 (1724)
T 4f92_B 156 KRLATY--GITVAELTGDHQLCKEE---ISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEA 229 (1724)
T ss_dssp HHHTTT--TCCEEECCSSCSSCCTT---GGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHH
T ss_pred HHHhhC--CCEEEEEECCCCCCccc---cCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHH
Confidence 887766 67888899987654332 25689999999998666654331 2338899999999997765 57766666
Q ss_pred HHH-------hCCcccceeeEeeeccHHHHHHHHHhcCCC-e-EEEecCCCCCCCCCeEEEEEEcCcccH-------HHH
Q psy16633 192 VLK-------FLPKLYQAILASATLSEDVLSLKHLILRNP-V-ILKLEEPAIAPVSQLAHYHILAQEDEK-------ATI 255 (540)
Q Consensus 192 i~~-------~l~~~~q~il~SATl~~~~~~~~~~~l~~p-~-~i~~~~~~~~~~~~l~~~~~~~~~~~k-------~~~ 255 (540)
++. ..++..|+|+||||+++. ..++.....++ . ...+.... .+..+.++++....... ...
T Consensus 230 ~l~rl~~~~~~~~~~~riI~LSATl~N~-~dvA~wL~~~~~~~~~~~~~~~--RPvpL~~~~~~~~~~~~~~~~~~~~~~ 306 (1724)
T 4f92_B 230 LVARAIRNIEMTQEDVRLIGLSATLPNY-EDVATFLRVDPAKGLFYFDNSF--RPVPLEQTYVGITEKKAIKRFQIMNEI 306 (1724)
T ss_dssp HHHHHHHHHHHHTCCCEEEEEECSCTTH-HHHHHHTTCCHHHHEEECCGGG--CSSCEEEECCEECCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCcEEEEecccCCH-HHHHHHhCCCCCCCeEEECCCC--ccCccEEEEeccCCcchhhhhHHHHHH
Confidence 554 346678999999999863 33433222222 1 11222221 12335555554443322 122
Q ss_pred HHHHHHhcccCCcEEEEecChhhHHHHHHHHHhC-------------------------------------CCceEEeCC
Q psy16633 256 LYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQF-------------------------------------KISTCVLNS 298 (540)
Q Consensus 256 l~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~-------------------------------------~~~~~~l~~ 298 (540)
++..+.....++++||||+|+..|+.++..|.+. ..+++++||
T Consensus 307 ~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHa 386 (1724)
T 4f92_B 307 VYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHA 386 (1724)
T ss_dssp HHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECS
T ss_pred HHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcC
Confidence 3333333445679999999999999888877531 235889999
Q ss_pred CCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEe----CCC------CC
Q psy16633 299 ELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVIN----FDF------PL 368 (540)
Q Consensus 299 ~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~----~d~------p~ 368 (540)
+|++.+|..+.+.|++|.++|||||+ ++++|||+|.+++||. ||. |.
T Consensus 387 gL~~~~R~~vE~~F~~G~i~vlvaTs-----------------------TLa~GVNlPa~~vVI~~~~~~~~~~~~~~~l 443 (1724)
T 4f92_B 387 GMTRVDRTLVEDLFADKHIQVLVSTA-----------------------TLAWGVNLPAHTVIIKGTQVYSPEKGRWTEL 443 (1724)
T ss_dssp SSCTHHHHHHHHHHHTTCCCEEEECH-----------------------HHHHHSCCCBSEEEEECCEEEETTTTEEEEC
T ss_pred CCCHHHHHHHHHHHHCCCCeEEEEcc-----------------------hhHhhCCCCCceEEEeCCEEecCcCCCcccC
Confidence 99999999999999999999999999 9999999999999985 543 56
Q ss_pred CcccchhccccccCCCC--CceEEEEecccccc
Q psy16633 369 DIQCYIHRAGRTARGKN--QGTALSFVSLREQD 399 (540)
Q Consensus 369 s~~~yiqr~GRagR~g~--~g~~i~~~~~~e~~ 399 (540)
+..+|.||+|||||.|. .|.++.+..+.+..
T Consensus 444 s~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~ 476 (1724)
T 4f92_B 444 GALDILQMLGRAGRPQYDTKGEGILITSHGELQ 476 (1724)
T ss_dssp CHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCC
T ss_pred CHHHHHHhhhhccCCCCCCccEEEEEecchhHH
Confidence 89999999999999875 68899888877654
No 42
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=3.4e-41 Score=355.41 Aligned_cols=288 Identities=16% Similarity=0.178 Sum_probs=217.0
Q ss_pred CCCCChHHHHHHHHHHhcCCcE-EEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHH
Q psy16633 37 GWLEPTLIQERAIPLILQNKDV-LVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELT 115 (540)
Q Consensus 37 g~~~pt~~Q~~ai~~il~gkd~-li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~ 115 (540)
|+.+|+|+|+ +||.+++|+++ ++.||||||||++|++|+++.+.. .+.++||++||++|+.|+++.+..+
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~-------~~~~~lvl~Ptr~La~Q~~~~l~g~- 71 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL-------RRLRTLILAPTRVVAAEMEEALRGL- 71 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHTTTS-
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh-------cCCcEEEECCCHHHHHHHHHHhcCc-
Confidence 7899999986 79999999887 999999999999999999988754 4689999999999999999887521
Q ss_pred hhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCCcHHHHHHHHHh
Q psy16633 116 MKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKF 195 (540)
Q Consensus 116 ~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~ 195 (540)
.+ ....+.... ....+..|.++|++.+.+.+.+. ..+ .++++|||||||++ +.++...+..+...
T Consensus 72 -----~v--~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l-~~~~~iViDEah~~-~~~~~~~~~~~~~~ 136 (451)
T 2jlq_A 72 -----PI--RYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRV-PNYNLIVMDEAHFT-DPCSVAARGYISTR 136 (451)
T ss_dssp -----CE--EECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCC-CCCSEEEEETTTCC-SHHHHHHHHHHHHH
T ss_pred -----ee--eeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccc-cCCCEEEEeCCccC-CcchHHHHHHHHHh
Confidence 22 111111100 11245679999999998888765 233 78999999999976 44333333333222
Q ss_pred -CCcccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcCcccHHHHHHHHHHhcccCCcEEEEec
Q psy16633 196 -LPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTIIFVN 274 (540)
Q Consensus 196 -l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~ll~~~~~~~k~IIF~~ 274 (540)
.++..|+++||||++..+.. ....++..+...... + ... + .. +...+.. ..+++||||+
T Consensus 137 ~~~~~~~~i~~SAT~~~~~~~---~~~~~~~~~~~~~~~-p-~~~---~------~~----~~~~l~~--~~~~~lVF~~ 196 (451)
T 2jlq_A 137 VEMGEAAAIFMTATPPGSTDP---FPQSNSPIEDIEREI-P-ERS---W------NT----GFDWITD--YQGKTVWFVP 196 (451)
T ss_dssp HHTTSCEEEEECSSCTTCCCS---SCCCSSCEEEEECCC-C-SSC---C------SS----SCHHHHH--CCSCEEEECS
T ss_pred hcCCCceEEEEccCCCccchh---hhcCCCceEecCccC-C-chh---h------HH----HHHHHHh--CCCCEEEEcC
Confidence 34468999999999874432 223344444333111 0 000 0 00 1122222 3579999999
Q ss_pred ChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccccccccccCccccccccCC
Q psy16633 275 TVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGID 354 (540)
Q Consensus 275 s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD 354 (540)
+++.|+.++..|.+.|+.+..+|+++. ..+++.|++|+.+|||||+ ++++|+|
T Consensus 197 s~~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~-----------------------v~~~GiD 249 (451)
T 2jlq_A 197 SIKAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTD-----------------------ISEMGAN 249 (451)
T ss_dssp SHHHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECG-----------------------GGGSSCC
T ss_pred CHHHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECC-----------------------HHHhCcC
Confidence 999999999999999999999999864 5789999999999999999 9999999
Q ss_pred CCCcCEEEeCC--------------------CCCCcccchhccccccCCCC-CceEEEEeccc
Q psy16633 355 FQFVSNVINFD--------------------FPLDIQCYIHRAGRTARGKN-QGTALSFVSLR 396 (540)
Q Consensus 355 ~~~v~~Vi~~d--------------------~p~s~~~yiqr~GRagR~g~-~g~~i~~~~~~ 396 (540)
+|+ ++||||| .|.|..+|+||+|||||.|. .|.+++|....
T Consensus 250 ip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~~ 311 (451)
T 2jlq_A 250 FRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDP 311 (451)
T ss_dssp CCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred CCC-CEEEECCCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCCc
Confidence 999 9999999 99999999999999999998 78888886533
No 43
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=8.8e-40 Score=350.89 Aligned_cols=311 Identities=14% Similarity=0.125 Sum_probs=232.7
Q ss_pred CChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcC
Q psy16633 40 EPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCS 119 (540)
Q Consensus 40 ~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~ 119 (540)
.||++|.+|++.+++++++++++|||+|||.+|+.++...+.. .+.++||++||++|+.|+++.+..++...
T Consensus 113 ~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~-------~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~- 184 (510)
T 2oca_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN-------YEGKILIIVPTTALTTQMADDFVDYRLFS- 184 (510)
T ss_dssp CCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH-------CSSEEEEEESSHHHHHHHHHHHHHTTSSC-
T ss_pred CCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC-------CCCeEEEEECcHHHHHHHHHHHHHhhcCC-
Confidence 7999999999999999999999999999999999988877643 34599999999999999999998875433
Q ss_pred CCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCCcHHHHHHHHHhCCcc
Q psy16633 120 RDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199 (540)
Q Consensus 120 ~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~ 199 (540)
.+.+..+.|+.....+ +...++|+|+||+.+... ....+ .++++|||||||++.. ..+..++..++..
T Consensus 185 -~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~---~~~~~-~~~~liIiDE~H~~~~----~~~~~il~~~~~~ 252 (510)
T 2oca_A 185 -HAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ---PKEWF-SQFGMMMNDECHLATG----KSISSIISGLNNC 252 (510)
T ss_dssp -GGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTTS---CGGGG-GGEEEEEEETGGGCCH----HHHHHHGGGCTTC
T ss_pred -ccceEEEecCCccccc---cccCCcEEEEeHHHHhhc---hhhhh-hcCCEEEEECCcCCCc----ccHHHHHHhcccC
Confidence 4667777777554433 446789999999976432 22333 7899999999998865 4577788888778
Q ss_pred cceeeEeeeccHHHHHH-HHHhcCCCeEEEecCCCCC-----CCCCeEEEEEEcCc---------------------ccH
Q psy16633 200 YQAILASATLSEDVLSL-KHLILRNPVILKLEEPAIA-----PVSQLAHYHILAQE---------------------DEK 252 (540)
Q Consensus 200 ~q~il~SATl~~~~~~~-~~~~l~~p~~i~~~~~~~~-----~~~~l~~~~~~~~~---------------------~~k 252 (540)
.++++||||++...... ....+.+|........... ....+....+..+. ..+
T Consensus 253 ~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (510)
T 2oca_A 253 MFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKR 332 (510)
T ss_dssp CEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHH
T ss_pred cEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHH
Confidence 89999999997654322 1122334444333222110 00111111111111 112
Q ss_pred HHHHHHHHHhc-ccCC-cEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeC-CCCccC
Q psy16633 253 ATILYTLLKLN-LVQG-KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIAS-DEKALE 329 (540)
Q Consensus 253 ~~~l~~ll~~~-~~~~-k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT-~~~~~~ 329 (540)
...+..++... ..++ ++|||++ ++.+..++..|.+.+.++..+||+++..+|..+++.|++|.++||||| +
T Consensus 333 ~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~----- 406 (510)
T 2oca_A 333 NKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYG----- 406 (510)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHH-----
T ss_pred HHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcC-----
Confidence 22333333322 1234 4555555 999999999999998899999999999999999999999999999999 9
Q ss_pred CcccccccccccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEEec
Q psy16633 330 TPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVS 394 (540)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~ 394 (540)
++++|+|+|++++||+++.|.|...|+||+||+||.|+.|.++++++
T Consensus 407 ------------------~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 407 ------------------VFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp ------------------HHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred ------------------hhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 99999999999999999999999999999999999998875565555
No 44
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=8.5e-39 Score=355.74 Aligned_cols=341 Identities=16% Similarity=0.158 Sum_probs=249.5
Q ss_pred cCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcC-CcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCc
Q psy16633 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQN-KDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPS 100 (540)
Q Consensus 22 ~~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~g-kd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt 100 (540)
++++++++.+.+...| ..|+++|+++|+.++.+ +++++.||||||||. ++|++- +.... ....+.+++|++|+
T Consensus 76 ~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll--~~~~~-~~~~g~~ilvl~P~ 149 (773)
T 2xau_A 76 GREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFV--LFDEM-PHLENTQVACTQPR 149 (773)
T ss_dssp CSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHH--HHHHC-GGGGTCEEEEEESC
T ss_pred ccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHH--HHhcc-ccCCCceEEecCch
Confidence 5789999999999998 78999999999988864 679999999999998 566662 21110 11236789999999
Q ss_pred HHHHHHHHHHHHHHHh-hcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccc
Q psy16633 101 KELCNQLHKNIQELTM-KCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADL 179 (540)
Q Consensus 101 ~~La~q~~~~l~~l~~-~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~ 179 (540)
++|+.|+++.+..... .+ ...+.... ... ......++|+++||+++.+.+.... .+ .++++|||||+|.
T Consensus 150 r~La~q~~~~l~~~~~~~v--~~~vG~~i---~~~---~~~~~~~~I~v~T~G~l~r~l~~~~-~l-~~~~~lIlDEah~ 219 (773)
T 2xau_A 150 RVAAMSVAQRVAEEMDVKL--GEEVGYSI---RFE---NKTSNKTILKYMTDGMLLREAMEDH-DL-SRYSCIILDEAHE 219 (773)
T ss_dssp HHHHHHHHHHHHHHTTCCB--TTTEEEEE---TTE---EECCTTCSEEEEEHHHHHHHHHHST-TC-TTEEEEEECSGGG
T ss_pred HHHHHHHHHHHHHHhCCch--hheeccee---ccc---cccCCCCCEEEECHHHHHHHHhhCc-cc-cCCCEEEecCccc
Confidence 9999999887655431 11 11111100 000 1112468999999999998887653 23 8999999999995
Q ss_pred -cccCCc-HHHHHHHHHhCCcccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcCcccHHH-HH
Q psy16633 180 -VFSFGY-EDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKAT-IL 256 (540)
Q Consensus 180 -l~~~~~-~~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~~~k~~-~l 256 (540)
.++..+ ...+..+.... +..|+++||||++. ..+.. ++.++.++.+.... ..+.+++......+... .+
T Consensus 220 R~ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~~~--~~l~~-~~~~~~vi~v~gr~----~pv~~~~~~~~~~~~~~~~l 291 (773)
T 2xau_A 220 RTLATDILMGLLKQVVKRR-PDLKIIIMSATLDA--EKFQR-YFNDAPLLAVPGRT----YPVELYYTPEFQRDYLDSAI 291 (773)
T ss_dssp CCHHHHHHHHHHHHHHHHC-TTCEEEEEESCSCC--HHHHH-HTTSCCEEECCCCC----CCEEEECCSSCCSCHHHHHH
T ss_pred cccchHHHHHHHHHHHHhC-CCceEEEEeccccH--HHHHH-HhcCCCcccccCcc----cceEEEEecCCchhHHHHHH
Confidence 444221 23344444444 36799999999964 33444 44444445544332 23566665555544432 23
Q ss_pred HHHHHh--cccCCcEEEEecChhhHHHHHHHHHh-----------CCCceEEeCCCCCHHHHHHHHHHHh-----cCCcc
Q psy16633 257 YTLLKL--NLVQGKTIIFVNTVDKCYKLKLYLEQ-----------FKISTCVLNSELPAKARCHAVYQFN-----QGLYD 318 (540)
Q Consensus 257 ~~ll~~--~~~~~k~IIF~~s~~~~~~l~~~L~~-----------~~~~~~~l~~~l~~~~r~~i~~~F~-----~g~~~ 318 (540)
..++.. ....+++||||++++.++.++..|.+ .++.+..+||+|++.+|..+++.|. .|..+
T Consensus 292 ~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~k 371 (773)
T 2xau_A 292 RTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRK 371 (773)
T ss_dssp HHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEE
T ss_pred HHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceE
Confidence 333322 22478999999999999999999975 5788999999999999999999999 99999
Q ss_pred EEEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEeCCC------------------CCCcccchhccccc
Q psy16633 319 VIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDF------------------PLDIQCYIHRAGRT 380 (540)
Q Consensus 319 iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~------------------p~s~~~yiqr~GRa 380 (540)
|||||+ ++++|||+|+|++||++|+ |.|..+|+||+|||
T Consensus 372 VlVAT~-----------------------iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRa 428 (773)
T 2xau_A 372 VVISTN-----------------------IAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRA 428 (773)
T ss_dssp EEEECT-----------------------HHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGG
T ss_pred EEEeCc-----------------------HHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhcccc
Confidence 999999 9999999999999999888 88999999999999
Q ss_pred cCCCCCceEEEEeccccc-cccccccchhhh
Q psy16633 381 ARGKNQGTALSFVSLREQ-DLMNDGTALSFV 410 (540)
Q Consensus 381 gR~g~~g~~i~~~~~~e~-~~~~~~~~~~~~ 410 (540)
||. .+|.|+.|+++.+. ..+......++.
T Consensus 429 GR~-~~G~~~~l~~~~~~~~~l~~~~~pEi~ 458 (773)
T 2xau_A 429 GRT-RPGKCFRLYTEEAFQKELIEQSYPEIL 458 (773)
T ss_dssp GSS-SSEEEEESSCHHHHHHTSCSSCCCGGG
T ss_pred CCC-CCCEEEEEecHHHhcccccccCCCccc
Confidence 999 88999999987766 444444444433
No 45
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=5.2e-40 Score=359.09 Aligned_cols=298 Identities=18% Similarity=0.227 Sum_probs=214.2
Q ss_pred HHHHCCCC-----CChHHHH-----HHHHHHh------cCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEE
Q psy16633 32 AIAKLGWL-----EPTLIQE-----RAIPLIL------QNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKAL 95 (540)
Q Consensus 32 ~l~~~g~~-----~pt~~Q~-----~ai~~il------~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vl 95 (540)
++..+||. +||++|+ ++||.++ +|+|++++||||||||++|++|+++.+.. .+.++|
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~-------~~~~~l 274 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ-------KRLRTA 274 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH-------TTCCEE
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh-------CCCcEE
Confidence 55566777 8999999 9999998 89999999999999999999999988754 468999
Q ss_pred EEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEc
Q psy16633 96 VLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIID 175 (540)
Q Consensus 96 il~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViD 175 (540)
|++||++||.|+++.+..+. +. ...+... .....+.-+-+.+.+.+.+.+... ..+ .++++||||
T Consensus 275 ilaPTr~La~Q~~~~l~~~~------i~--~~~~~l~-----~v~tp~~ll~~l~~~~l~~~l~~~-~~l-~~l~lvViD 339 (673)
T 2wv9_A 275 VLAPTRVVAAEMAEALRGLP------VR--YLTPAVQ-----REHSGNEIVDVMCHATLTHRLMSP-LRV-PNYNLFVMD 339 (673)
T ss_dssp EEESSHHHHHHHHHHTTTSC------CE--ECCC--------CCCCSCCCEEEEEHHHHHHHHHSS-SCC-CCCSEEEEE
T ss_pred EEccHHHHHHHHHHHHhcCC------ee--eeccccc-----ccCCHHHHHHHHHhhhhHHHHhcc-ccc-ccceEEEEe
Confidence 99999999999998887442 21 1111000 000112234455666665555443 334 889999999
Q ss_pred CccccccCCcHHHHHHHHHhCC-cccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcCcccHHH
Q psy16633 176 EADLVFSFGYEDDMKAVLKFLP-KLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKAT 254 (540)
Q Consensus 176 Eah~l~~~~~~~~l~~i~~~l~-~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~~~k~~ 254 (540)
|||++ +..+...+..+...++ ...|+++||||++..+..+... ..|. ..+.. .........
T Consensus 340 EaH~~-~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~--~~~i-~~v~~--------------~~~~~~~~~ 401 (673)
T 2wv9_A 340 EAHFT-DPASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPDT--NSPV-HDVSS--------------EIPDRAWSS 401 (673)
T ss_dssp STTCC-CHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC--SSCE-EEEEC--------------CCCSSCCSS
T ss_pred CCccc-CccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhccc--CCce-EEEee--------------ecCHHHHHH
Confidence 99987 3223334444444443 5789999999998654321110 1111 11110 011111111
Q ss_pred HHHHHHHhcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccc
Q psy16633 255 ILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQIN 334 (540)
Q Consensus 255 ~l~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~ 334 (540)
.+..+.+ ..+++||||++++.++.++..|.+.++.+..+||+ +|..+++.|++|+.+|||||+
T Consensus 402 ~l~~l~~---~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTd---------- 464 (673)
T 2wv9_A 402 GFEWITD---YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTD---------- 464 (673)
T ss_dssp CCHHHHS---CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECG----------
T ss_pred HHHHHHh---CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECc----------
Confidence 2222222 46799999999999999999999999999999994 789999999999999999999
Q ss_pred cccccccccCccccccccCCCCCcCEEEe--------------------CCCCCCcccchhccccccCC-CCCceEEEEe
Q psy16633 335 STNNRKRKRDKESGVSRGIDFQFVSNVIN--------------------FDFPLDIQCYIHRAGRTARG-KNQGTALSFV 393 (540)
Q Consensus 335 ~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~--------------------~d~p~s~~~yiqr~GRagR~-g~~g~~i~~~ 393 (540)
++++|||+| +++||| ||+|.|.++|+||+|||||. |+.|.|++|+
T Consensus 465 -------------v~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~ 530 (673)
T 2wv9_A 465 -------------ISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYG 530 (673)
T ss_dssp -------------GGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEEC
T ss_pred -------------hhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEE
Confidence 999999999 999998 67899999999999999999 7899999996
Q ss_pred ---ccccccc
Q psy16633 394 ---SLREQDL 400 (540)
Q Consensus 394 ---~~~e~~~ 400 (540)
++.+...
T Consensus 531 ~~~~~~d~~~ 540 (673)
T 2wv9_A 531 GGTSEDDTML 540 (673)
T ss_dssp SCCCCCCTTB
T ss_pred ecCChhHHHH
Confidence 4555544
No 46
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=2.6e-40 Score=347.23 Aligned_cols=269 Identities=17% Similarity=0.202 Sum_probs=188.3
Q ss_pred HhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCc
Q psy16633 52 ILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQV 131 (540)
Q Consensus 52 il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~ 131 (540)
+++|+|++++||||||||++|++|+++.+.. .+.+++|++||++||.|+++.+..+ .+. ...+..
T Consensus 5 l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~-------~~~~~lil~Ptr~La~Q~~~~l~~~------~v~--~~~~~~ 69 (440)
T 1yks_A 5 LKKGMTTVLDFHPGAGKTRRFLPQILAECAR-------RRLRTLVLAPTRVVLSEMKEAFHGL------DVK--FHTQAF 69 (440)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHTTTS------CEE--EESSCC
T ss_pred hhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh-------cCCeEEEEcchHHHHHHHHHHHhcC------CeE--Eecccc
Confidence 5689999999999999999999999998754 4679999999999999999988743 222 111110
Q ss_pred ccccchhhhhCCCCEEEEChHHHH---------HHHhcCcCCccCCccEEEEcCccccccCCcHHHHHHHHHhC-Ccccc
Q psy16633 132 DVSVQEPLLVERPDIVVATPARAL---------AHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFL-PKLYQ 201 (540)
Q Consensus 132 ~~~~~~~~l~~~~~Ivv~Tp~~l~---------~~l~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~l-~~~~q 201 (540)
. .++||++++ ..+... ..+ .++++|||||||++ +.++...+..+.... +...|
T Consensus 70 ~--------------~v~Tp~~l~~~l~~~~l~~~~~~~-~~~-~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~ 132 (440)
T 1yks_A 70 S--------------AHGSGREVIDAMCHATLTYRMLEP-TRV-VNWEVIIMDEAHFL-DPASIAARGWAAHRARANESA 132 (440)
T ss_dssp C--------------CCCCSSCCEEEEEHHHHHHHHTSS-SCC-CCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCE
T ss_pred e--------------eccCCccceeeecccchhHhhhCc-ccc-cCccEEEEECcccc-CcchHHHHHHHHHHhccCCce
Confidence 0 255554433 222222 224 88999999999988 444444444443333 35689
Q ss_pred eeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcCcccHHHHHHHHHHhcccCCcEEEEecChhhHHH
Q psy16633 202 AILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYK 281 (540)
Q Consensus 202 ~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~ll~~~~~~~k~IIF~~s~~~~~~ 281 (540)
+++||||+++.+..+... ..|. ......+....+...+..+.+ .++++||||++++.|+.
T Consensus 133 ~l~~SAT~~~~~~~~~~~--~~~~---------------~~~~~~~~~~~~~~~~~~l~~---~~~~~lVF~~s~~~a~~ 192 (440)
T 1yks_A 133 TILMTATPPGTSDEFPHS--NGEI---------------EDVQTDIPSEPWNTGHDWILA---DKRPTAWFLPSIRAANV 192 (440)
T ss_dssp EEEECSSCTTCCCSSCCC--SSCE---------------EEEECCCCSSCCSSSCHHHHH---CCSCEEEECSCHHHHHH
T ss_pred EEEEeCCCCchhhhhhhc--CCCe---------------eEeeeccChHHHHHHHHHHHh---cCCCEEEEeCCHHHHHH
Confidence 999999998754322110 1111 111111111111112222322 26799999999999999
Q ss_pred HHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccccccccccCccccccccCCCCCcCEE
Q psy16633 282 LKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNV 361 (540)
Q Consensus 282 l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~V 361 (540)
++..|++.++++..+|| .+|..+++.|++|+.+|||||+ ++++|+|+| +++|
T Consensus 193 l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~-----------------------v~e~GiDip-v~~V 244 (440)
T 1yks_A 193 MAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATD-----------------------IAEMGANLC-VERV 244 (440)
T ss_dssp HHHHHHHTTCCEEECCS----SSCC--------CCCSEEEESS-----------------------STTCCTTCC-CSEE
T ss_pred HHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECC-----------------------hhheeeccC-ceEE
Confidence 99999999999999999 3688999999999999999999 999999999 9999
Q ss_pred Ee-------------------CCCCCCcccchhccccccCC-CCCceEEEEe---ccccccc
Q psy16633 362 IN-------------------FDFPLDIQCYIHRAGRTARG-KNQGTALSFV---SLREQDL 400 (540)
Q Consensus 362 i~-------------------~d~p~s~~~yiqr~GRagR~-g~~g~~i~~~---~~~e~~~ 400 (540)
|+ ||.|.+..+|+||+||+||. |++|.|++|+ ++.+...
T Consensus 245 I~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~ 306 (440)
T 1yks_A 245 LDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHH 306 (440)
T ss_dssp EECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTB
T ss_pred EeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhh
Confidence 86 88999999999999999997 6899999997 4555555
No 47
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=1.1e-37 Score=301.56 Aligned_cols=222 Identities=25% Similarity=0.362 Sum_probs=199.4
Q ss_pred cccccCCccchhcccCCccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhh
Q psy16633 4 KLGWLEPTLIQVYFELPFTFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINL 83 (540)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~ 83 (540)
.-|...|.++..|.+ ++|++.+++++.++||..||++|.++|+.+++|+|+++.||||||||++|++|+++.+...
T Consensus 19 ~~~~~~p~~~~~f~~----~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~ 94 (242)
T 3fe2_A 19 VRGHNCPKPVLNFYE----ANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQ 94 (242)
T ss_dssp EESSCCCCCCSSTTT----TTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTS
T ss_pred EeCCCCCCccCCHhh----cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhc
Confidence 456678888888877 6789999999999999999999999999999999999999999999999999999998764
Q ss_pred cccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcC
Q psy16633 84 KQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTL 163 (540)
Q Consensus 84 ~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~ 163 (540)
.......+.++||++||++|+.|+++.++.++... ++.+..+.|+.....+...+..+++|+|+||+++.+++.....
T Consensus 95 ~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~ 172 (242)
T 3fe2_A 95 PFLERGDGPICLVLAPTRELAQQVQQVAAEYCRAC--RLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKT 172 (242)
T ss_dssp CCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSC
T ss_pred cccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhc--CceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCC
Confidence 33233467889999999999999999999998877 6778888888887777777778899999999999999988777
Q ss_pred CccCCccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEeeeccHHHHHHHHHhcCCCeEEEecCC
Q psy16633 164 DLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEP 232 (540)
Q Consensus 164 ~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~ 232 (540)
.+ .+++++|+||||++.+++|...+..++..+++..|+++||||+++.+..+...++.+|..+.+...
T Consensus 173 ~~-~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 240 (242)
T 3fe2_A 173 NL-RRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGAL 240 (242)
T ss_dssp CC-TTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC-
T ss_pred Cc-ccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 66 899999999999999999999999999999999999999999999999999999999999988654
No 48
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=2.1e-39 Score=349.33 Aligned_cols=277 Identities=20% Similarity=0.211 Sum_probs=209.2
Q ss_pred hHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCC
Q psy16633 42 TLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRD 121 (540)
Q Consensus 42 t~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~ 121 (540)
.+.|+.+++.+..++++++.||||||||.+|.+|+++ .+.++||++|||+||.|+++.+.+...
T Consensus 219 ~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~-----------~g~~vLVl~PTReLA~Qia~~l~~~~g----- 282 (666)
T 3o8b_A 219 FTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA-----------QGYKVLVLNPSVAATLGFGAYMSKAHG----- 282 (666)
T ss_dssp CCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH-----------TTCCEEEEESCHHHHHHHHHHHHHHHS-----
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH-----------CCCeEEEEcchHHHHHHHHHHHHHHhC-----
Confidence 3455555555557889999999999999999988774 356899999999999999987766542
Q ss_pred ceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCCcHHHHHHHHHhCCcccc
Q psy16633 122 VKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQ 201 (540)
Q Consensus 122 i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q 201 (540)
..+....|+.. ...+++|+|+||++| +....+.+ .++++||||||| +++.++...+..+++.++...|
T Consensus 283 ~~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l-~~l~~lVlDEAH-~l~~~~~~~l~~Il~~l~~~~~ 350 (666)
T 3o8b_A 283 IDPNIRTGVRT-------ITTGAPVTYSTYGKF---LADGGCSG-GAYDIIICDECH-STDSTTILGIGTVLDQAETAGA 350 (666)
T ss_dssp CCCEEECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCT-TSCSEEEETTTT-CCSHHHHHHHHHHHHHTTTTTC
T ss_pred CCeeEEECcEe-------ccCCCCEEEECcHHH---HhCCCccc-CcccEEEEccch-hcCccHHHHHHHHHHhhhhcCC
Confidence 23344445432 236789999999997 34555555 889999999997 5677888889999999987766
Q ss_pred --eeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcCcccHHHHHHHHHHhcccCCcEEEEecChhhH
Q psy16633 202 --AILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKC 279 (540)
Q Consensus 202 --~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~ll~~~~~~~k~IIF~~s~~~~ 279 (540)
+++||||++..+. ...|....+.... ...+. ++ ..... +. ....+++||||++++.+
T Consensus 351 ~llil~SAT~~~~i~------~~~p~i~~v~~~~---~~~i~-~~---~~~~~-------l~-~~~~~~vLVFv~Tr~~a 409 (666)
T 3o8b_A 351 RLVVLATATPPGSVT------VPHPNIEEVALSN---TGEIP-FY---GKAIP-------IE-AIRGGRHLIFCHSKKKC 409 (666)
T ss_dssp SEEEEEESSCTTCCC------CCCTTEEEEECBS---CSSEE-ET---TEEEC-------GG-GSSSSEEEEECSCHHHH
T ss_pred ceEEEECCCCCcccc------cCCcceEEEeecc---cchhH-HH---Hhhhh-------hh-hccCCcEEEEeCCHHHH
Confidence 7788999987421 1222222211110 01111 10 00000 01 22567999999999999
Q ss_pred HHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccccccccccCccccccccCCCCCcC
Q psy16633 280 YKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVS 359 (540)
Q Consensus 280 ~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~ 359 (540)
+.++..|++.++.+..+||+|++.+ |.++..+|||||| ++++|||++ ++
T Consensus 410 e~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATd-----------------------VaerGIDId-V~ 458 (666)
T 3o8b_A 410 DELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATD-----------------------ALMTGYTGD-FD 458 (666)
T ss_dssp HHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECT-----------------------THHHHCCCC-BS
T ss_pred HHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECC-----------------------hHHccCCCC-Cc
Confidence 9999999999999999999999875 4566779999999 999999997 99
Q ss_pred EEE----------eCC-----------CCCCcccchhccccccCCCCCceEEEEeccccccc
Q psy16633 360 NVI----------NFD-----------FPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDL 400 (540)
Q Consensus 360 ~Vi----------~~d-----------~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e~~~ 400 (540)
+|| ||| .|.|.++|+||+||||| |++|. ++|+++.+...
T Consensus 459 ~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 459 SVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPS 518 (666)
T ss_dssp EEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCS
T ss_pred EEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhc
Confidence 988 788 89999999999999999 89999 99998877543
No 49
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=1.3e-38 Score=338.58 Aligned_cols=288 Identities=19% Similarity=0.202 Sum_probs=218.5
Q ss_pred CChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcC
Q psy16633 40 EPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCS 119 (540)
Q Consensus 40 ~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~ 119 (540)
.|+++|.++++.+++++++++.+|||+|||++|+.++... +.++||++|+++|+.|+.+.+..+
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~-----------~~~~Lvl~P~~~L~~Q~~~~~~~~----- 156 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----------STPTLIVVPTLALAEQWKERLGIF----- 156 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH-----------CSCEEEEESSHHHHHHHHHHGGGG-----
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc-----------CCCEEEEECCHHHHHHHHHHHHhC-----
Confidence 6899999999999999999999999999999999887643 568999999999999999998884
Q ss_pred CCce-EEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCCcHHHHHHHHHhCCc
Q psy16633 120 RDVK-CVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPK 198 (540)
Q Consensus 120 ~~i~-~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~ 198 (540)
++. +..+.|+.. ..++|+|+||+.+...+.. +...+++|||||||.+.+.+|.. +...++
T Consensus 157 -~~~~v~~~~g~~~---------~~~~Ivv~T~~~l~~~~~~----~~~~~~liIvDEaH~~~~~~~~~----~~~~~~- 217 (472)
T 2fwr_A 157 -GEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEK----LGNRFMLLIFDEVHHLPAESYVQ----IAQMSI- 217 (472)
T ss_dssp -CGGGEEEBSSSCB---------CCCSEEEEEHHHHHHTHHH----HTTTCSEEEEETGGGTTSTTTHH----HHHTCC-
T ss_pred -CCcceEEECCCcC---------CcCCEEEEEcHHHHHHHHH----hcCCCCEEEEECCcCCCChHHHH----HHHhcC-
Confidence 355 677776643 3578999999998776642 12568999999999999888764 445554
Q ss_pred ccceeeEeeeccH-------------------HHHHHHHHhcCCCeEEEe--cCCC-----------------------C
Q psy16633 199 LYQAILASATLSE-------------------DVLSLKHLILRNPVILKL--EEPA-----------------------I 234 (540)
Q Consensus 199 ~~q~il~SATl~~-------------------~~~~~~~~~l~~p~~i~~--~~~~-----------------------~ 234 (540)
..+++++|||+.. ....+...++..+....+ +... .
T Consensus 218 ~~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 297 (472)
T 2fwr_A 218 APFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITL 297 (472)
T ss_dssp CSEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTT
T ss_pred CCeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 4689999999972 122222222222221111 1000 0
Q ss_pred CCCCCeEEEE---------------------EEcCcccHHHHHHHHHHhcccCCcEEEEecChhhHHHHHHHHHhCCCce
Q psy16633 235 APVSQLAHYH---------------------ILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKIST 293 (540)
Q Consensus 235 ~~~~~l~~~~---------------------~~~~~~~k~~~l~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~ 293 (540)
.....+.+++ +.+....|...+..+++. ..++++||||++++.++.++..|. +
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~k~lvF~~~~~~~~~l~~~l~-----~ 371 (472)
T 2fwr_A 298 RRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILER-HRKDKIIIFTRHNELVYRISKVFL-----I 371 (472)
T ss_dssp TCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHH-TSSSCBCCBCSCHHHHHHHHHHTT-----C
T ss_pred cchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHh-CCCCcEEEEECCHHHHHHHHHHhC-----c
Confidence 0000000000 012234566777777775 356799999999999999998873 6
Q ss_pred EEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEeCCCCCCcccc
Q psy16633 294 CVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCY 373 (540)
Q Consensus 294 ~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~y 373 (540)
..+||+++..+|..+++.|++|.++|||||+ ++++|+|+|++++||++|.|+|+..|
T Consensus 372 ~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~-----------------------~~~~Gldlp~~~~Vi~~~~~~s~~~~ 428 (472)
T 2fwr_A 372 PAITHRTSREEREEILEGFRTGRFRAIVSSQ-----------------------VLDEGIDVPDANVGVIMSGSGSAREY 428 (472)
T ss_dssp CBCCSSSCSHHHHTHHHHHHHSSCSBCBCSS-----------------------CCCSSSCSCCBSEEEEECCSSCCHHH
T ss_pred ceeeCCCCHHHHHHHHHHHhCCCCCEEEEcC-----------------------chhcCcccccCcEEEEECCCCCHHHH
Confidence 6799999999999999999999999999999 99999999999999999999999999
Q ss_pred hhccccccCCCCC-ceEEE
Q psy16633 374 IHRAGRTARGKNQ-GTALS 391 (540)
Q Consensus 374 iqr~GRagR~g~~-g~~i~ 391 (540)
+||+||+||.|+. +.+++
T Consensus 429 ~Q~~GR~~R~g~~k~~~~i 447 (472)
T 2fwr_A 429 IQRLGRILRPSKGKKEAVL 447 (472)
T ss_dssp HHHHHHSBCCCTTTCCEEE
T ss_pred HHHHhhccCCCCCCceEEE
Confidence 9999999999854 44444
No 50
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=1.1e-38 Score=336.70 Aligned_cols=273 Identities=19% Similarity=0.246 Sum_probs=196.7
Q ss_pred HHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEee
Q psy16633 49 IPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDIS 128 (540)
Q Consensus 49 i~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~ 128 (540)
...+.+|++++++||||||||++|++|+++.+.. .+.++||++||++|+.|+++.+..+ .+. ...
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~-------~~~~~lvl~Ptr~La~Q~~~~l~g~------~v~--~~~ 79 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ-------QRLRTAVLAPTRVVAAEMAEALRGL------PVR--YQT 79 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH-------TTCCEEEEECSHHHHHHHHHHTTTS------CEE--ECC
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh-------CCCcEEEECchHHHHHHHHHHhcCc------eEe--EEe
Confidence 3445668999999999999999999999998764 4689999999999999999988621 221 111
Q ss_pred cCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCcccc-----ccCCcHHHHHHHHHhCCccccee
Q psy16633 129 EQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLV-----FSFGYEDDMKAVLKFLPKLYQAI 203 (540)
Q Consensus 129 ~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l-----~~~~~~~~l~~i~~~l~~~~q~i 203 (540)
+..... -..+..+.++|.+.+...+... ..+ .++++|||||||.+ +..++...+. .++..|++
T Consensus 80 ~~~~~~-----~t~~~~i~~~~~~~l~~~l~~~-~~l-~~~~~iViDEaH~~~~~~~~~~~~~~~~~-----~~~~~~~i 147 (459)
T 2z83_A 80 SAVQRE-----HQGNEIVDVMCHATLTHRLMSP-NRV-PNYNLFVMDEAHFTDPASIAARGYIATKV-----ELGEAAAI 147 (459)
T ss_dssp -------------CCCSEEEEEHHHHHHHHHSC-C-C-CCCSEEEESSTTCCSHHHHHHHHHHHHHH-----HTTSCEEE
T ss_pred cccccC-----CCCCcEEEEEchHHHHHHhhcc-ccc-cCCcEEEEECCccCCchhhHHHHHHHHHh-----ccCCccEE
Confidence 111000 0123457789999888777654 333 88999999999973 3333222211 13568999
Q ss_pred eEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcCcccHHHHHHHHHHhcccCCcEEEEecChhhHHHHH
Q psy16633 204 LASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLK 283 (540)
Q Consensus 204 l~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~ll~~~~~~~k~IIF~~s~~~~~~l~ 283 (540)
+||||++..+..+.. ...|+... ... .+.. ....+..++.. ..+++||||++++.|+.++
T Consensus 148 l~SAT~~~~~~~~~~--~~~pi~~~-~~~--------------~~~~-~~~~~~~~l~~--~~~~~LVF~~s~~~~~~l~ 207 (459)
T 2z83_A 148 FMTATPPGTTDPFPD--SNAPIHDL-QDE--------------IPDR-AWSSGYEWITE--YAGKTVWFVASVKMGNEIA 207 (459)
T ss_dssp EECSSCTTCCCSSCC--CSSCEEEE-ECC--------------CCSS-CCSSCCHHHHH--CCSCEEEECSCHHHHHHHH
T ss_pred EEEcCCCcchhhhcc--CCCCeEEe-ccc--------------CCcc-hhHHHHHHHHh--cCCCEEEEeCChHHHHHHH
Confidence 999999875432211 12233221 110 0000 00011122222 3679999999999999999
Q ss_pred HHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEe
Q psy16633 284 LYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVIN 363 (540)
Q Consensus 284 ~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~ 363 (540)
..|++.++.+..+|++ +|..+++.|++|..+|||||+ ++++|+|+|+ ++||+
T Consensus 208 ~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~-----------------------v~~~GiDip~-~~VI~ 259 (459)
T 2z83_A 208 MCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTD-----------------------ISEMGANFGA-SRVID 259 (459)
T ss_dssp HHHHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESS-----------------------CC---CCCSC-SEEEE
T ss_pred HHHHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECC-----------------------hHHhCeecCC-CEEEE
Confidence 9999999999999995 678899999999999999999 9999999999 99999
Q ss_pred --------------------CCCCCCcccchhccccccCCCC-CceEEEEeccc
Q psy16633 364 --------------------FDFPLDIQCYIHRAGRTARGKN-QGTALSFVSLR 396 (540)
Q Consensus 364 --------------------~d~p~s~~~yiqr~GRagR~g~-~g~~i~~~~~~ 396 (540)
||.|.|..+|+||+|||||.|. +|.+++|+...
T Consensus 260 ~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 260 CRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp CCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred CCcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 7899999999999999999997 89999999875
No 51
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=8.5e-37 Score=319.79 Aligned_cols=270 Identities=13% Similarity=0.198 Sum_probs=193.0
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCccc
Q psy16633 54 QNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDV 133 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~ 133 (540)
+|++++++||||||||++|++|+++.+.. .+.+++|++||++|+.|+++.+. ++.+...++....
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~-------~g~~~lvl~Pt~~La~Q~~~~~~--------~~~v~~~~~~~~~ 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK-------KRLRTVILAPTRVVASEMYEALR--------GEPIRYMTPAVQS 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHTT--------TSCEEEC------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh-------CCCCEEEECcHHHHHHHHHHHhC--------CCeEEEEecCccc
Confidence 47899999999999999999999977654 46799999999999999988775 2233334443211
Q ss_pred ccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCCcHHHHHHHHHhC-CcccceeeEeeeccHH
Q psy16633 134 SVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFL-PKLYQAILASATLSED 212 (540)
Q Consensus 134 ~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~l-~~~~q~il~SATl~~~ 212 (540)
....+..+.+.|.+.+.+.+.. ...+ .++++|||||+|++ +.++......+.... +...|+++||||+++.
T Consensus 66 -----~~~~~~~~~~~~~~~l~~~l~~-~~~~-~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~ 137 (431)
T 2v6i_A 66 -----ERTGNEIVDFMCHSTFTMKLLQ-GVRV-PNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGT 137 (431)
T ss_dssp --------CCCSEEEEEHHHHHHHHHH-TCCC-CCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTC
T ss_pred -----cCCCCceEEEEchHHHHHHHhc-Cccc-cCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcc
Confidence 1112445778899988777666 3344 88999999999986 433344444444332 4578999999999874
Q ss_pred HHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcCcccHHHHHHHHHHhcccCCcEEEEecChhhHHHHHHHHHhCCCc
Q psy16633 213 VLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKIS 292 (540)
Q Consensus 213 ~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~ 292 (540)
+..+... ..|. ..... ..+... ...+..++.. ..+++||||++++.++.++..|.+.+++
T Consensus 138 ~~~~~~~--~~~i-~~~~~--------------~~~~~~-~~~~~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~ 197 (431)
T 2v6i_A 138 TEAFPPS--NSPI-IDEET--------------RIPDKA-WNSGYEWITE--FDGRTVWFVHSIKQGAEIGTCLQKAGKK 197 (431)
T ss_dssp CCSSCCC--SSCC-EEEEC--------------CCCSSC-CSSCCHHHHS--CSSCEEEECSSHHHHHHHHHHHHHTTCC
T ss_pred hhhhcCC--CCce-eeccc--------------cCCHHH-HHHHHHHHHc--CCCCEEEEeCCHHHHHHHHHHHHHcCCe
Confidence 3211100 1111 11100 011111 1111223332 3679999999999999999999999999
Q ss_pred eEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccccccccccCccccccccCCCCCcCE------------
Q psy16633 293 TCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSN------------ 360 (540)
Q Consensus 293 ~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~------------ 360 (540)
+..+||+ +|..+++.|++|+.+|||||+ ++++|+|+| +.+
T Consensus 198 v~~lhg~----~r~~~~~~f~~g~~~vLVaT~-----------------------v~e~GiDip-~~~VI~~g~~~~~v~ 249 (431)
T 2v6i_A 198 VLYLNRK----TFESEYPKCKSEKWDFVITTD-----------------------ISEMGANFK-ADRVIDPRKTIKPIL 249 (431)
T ss_dssp EEEESTT----THHHHTTHHHHSCCSEEEECG-----------------------GGGTSCCCC-CSEEEECCEEEEEEE
T ss_pred EEEeCCc----cHHHHHHhhcCCCCeEEEECc-----------------------hHHcCcccC-CcEEEecCcccccee
Confidence 9999997 578899999999999999999 999999999 655
Q ss_pred -----EEeCCCCCCcccchhccccccCCCC-CceEEEEec
Q psy16633 361 -----VINFDFPLDIQCYIHRAGRTARGKN-QGTALSFVS 394 (540)
Q Consensus 361 -----Vi~~d~p~s~~~yiqr~GRagR~g~-~g~~i~~~~ 394 (540)
||+++.|.+..+|+||+||+||.|. .|.++++..
T Consensus 250 d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~~ 289 (431)
T 2v6i_A 250 LDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYSG 289 (431)
T ss_dssp ETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEECS
T ss_pred cccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEcC
Confidence 6788999999999999999999985 556666653
No 52
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=7.6e-36 Score=285.96 Aligned_cols=213 Identities=27% Similarity=0.394 Sum_probs=181.4
Q ss_pred CCccchhcccCCccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcc-cc
Q psy16633 9 EPTLIQVYFELPFTFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQ-TA 87 (540)
Q Consensus 9 ~~~~~~~~~~~~~~~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~-~~ 87 (540)
.|.++..|.+ .+++++.+++++.++||.+||++|.++++.+++|+|+++.||||||||++|++|+++.+..... ..
T Consensus 14 ~p~p~~~f~~---~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~ 90 (228)
T 3iuy_A 14 IPKPTCRFKD---AFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISRE 90 (228)
T ss_dssp CCCCCCSHHH---HHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC-------
T ss_pred CCCChhhHhh---hhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhh
Confidence 5667777666 3678999999999999999999999999999999999999999999999999999988754211 11
Q ss_pred cCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccC
Q psy16633 88 QVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKS 167 (540)
Q Consensus 88 ~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~ 167 (540)
...+.++||++||++|+.|+++.+..+. ..++.+..+.|+.....+...+..+++|+|+||+++.+++......+ .
T Consensus 91 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~-~ 166 (228)
T 3iuy_A 91 QRNGPGMLVLTPTRELALHVEAECSKYS---YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNL-R 166 (228)
T ss_dssp --CCCSEEEECSSHHHHHHHHHHHHHHC---CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCC-T
T ss_pred ccCCCcEEEEeCCHHHHHHHHHHHHHhc---ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCc-c
Confidence 2367889999999999999999999875 23677788888887777777777889999999999999988877766 8
Q ss_pred CccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEeeeccHHHHHHHHHhcCCCeEEE
Q psy16633 168 SLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILK 228 (540)
Q Consensus 168 ~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~ 228 (540)
+++++|+||||++.+++|...+..++..+++..|+++||||+++.+..+...++.+|..+.
T Consensus 167 ~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 167 SITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp TCCEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred cceEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 9999999999999999999999999999999999999999999999999999999998775
No 53
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=2.1e-35 Score=294.34 Aligned_cols=200 Identities=26% Similarity=0.434 Sum_probs=175.3
Q ss_pred cCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcC
Q psy16633 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQN--KDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSP 99 (540)
Q Consensus 22 ~~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~g--kd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~P 99 (540)
+++|++.++++|..+||..||++|.++||.+++| +|++++||||||||++|++|+++.+... ..++++||++|
T Consensus 96 ~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~-----~~~~~~lil~P 170 (300)
T 3fmo_B 96 ELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-----NKYPQCLCLSP 170 (300)
T ss_dssp GGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTT-----SCSCCEEEECS
T ss_pred hcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhcc-----CCCceEEEEcC
Confidence 5789999999999999999999999999999998 9999999999999999999999987432 35678999999
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcC-cCCccCCccEEEEcCcc
Q psy16633 100 SKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAK-TLDLKSSLEIVIIDEAD 178 (540)
Q Consensus 100 t~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~-~~~~~~~l~~lViDEah 178 (540)
|++||.|+++.+..++..+. .+.+....|+....... ...++|+|+||++|++++.+. .+.+ .++++|||||||
T Consensus 171 treLa~Q~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~~~~~l-~~l~~lVlDEad 245 (300)
T 3fmo_B 171 TYELALQTGKVIEQMGKFYP-ELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDP-KKIKVFVLDEAD 245 (300)
T ss_dssp SHHHHHHHHHHHHHHTTTST-TCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTTCCCCG-GGCSEEEETTHH
T ss_pred cHHHHHHHHHHHHHHHhhCC-CcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhcCCCCh-hhceEEEEeCHH
Confidence 99999999999999886542 56666666665543322 357899999999999999763 4555 899999999999
Q ss_pred cccc-CCcHHHHHHHHHhCCcccceeeEeeeccHHHHHHHHHhcCCCeEEEecC
Q psy16633 179 LVFS-FGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEE 231 (540)
Q Consensus 179 ~l~~-~~~~~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~ 231 (540)
++++ .+|...+..+...+++.+|+++||||+++.+..+...++.+|..+.+..
T Consensus 246 ~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~~ 299 (300)
T 3fmo_B 246 VMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKR 299 (300)
T ss_dssp HHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEECC
T ss_pred HHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEecC
Confidence 9998 7899999999999999999999999999999999999999999988753
No 54
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=3.7e-35 Score=279.40 Aligned_cols=204 Identities=28% Similarity=0.485 Sum_probs=181.0
Q ss_pred cCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcH
Q psy16633 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSK 101 (540)
Q Consensus 22 ~~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~ 101 (540)
+++|++.+++++.++||..|+++|+++++.+++|+|+++.||||||||++|++|+++.+.. ...+.++||++||+
T Consensus 8 ~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~-----~~~~~~~lil~Pt~ 82 (219)
T 1q0u_A 8 RFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKP-----ERAEVQAVITAPTR 82 (219)
T ss_dssp GSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCT-----TSCSCCEEEECSSH
T ss_pred hCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHh-----CcCCceEEEEcCcH
Confidence 5789999999999999999999999999999999999999999999999999999988743 13568999999999
Q ss_pred HHHHHHHHHHHHHHhhcCC--CceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccc
Q psy16633 102 ELCNQLHKNIQELTMKCSR--DVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADL 179 (540)
Q Consensus 102 ~La~q~~~~l~~l~~~~~~--~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~ 179 (540)
+|+.|+++.++.++..++. .+.+..+.|+.....+...+..+++|+|+||+++.+++..+...+ ..++++|+||||+
T Consensus 83 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~-~~~~~lViDEah~ 161 (219)
T 1q0u_A 83 ELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDV-HTAHILVVDEADL 161 (219)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCG-GGCCEEEECSHHH
T ss_pred HHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCc-CcceEEEEcCchH
Confidence 9999999999999876532 466777788776665555555688999999999999998877666 8899999999999
Q ss_pred cccCCcHHHHHHHHHhCCcccceeeEeeeccHHHHHHHHHhcCCCeEEEecC
Q psy16633 180 VFSFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEE 231 (540)
Q Consensus 180 l~~~~~~~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~ 231 (540)
+.+++|...+..++..+++..|+++||||+++++..+...++.+|..+.+..
T Consensus 162 ~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 162 MLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp HHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC-
T ss_pred HhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEeec
Confidence 9999999999999999998999999999999999999999999999887654
No 55
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=1.1e-34 Score=281.66 Aligned_cols=201 Identities=35% Similarity=0.587 Sum_probs=181.8
Q ss_pred cCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcH
Q psy16633 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSK 101 (540)
Q Consensus 22 ~~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~ 101 (540)
+++|++.+++++.++||..|+++|+++++.+++|+++++.||||||||++|++|+++.+... ..+.++||++||+
T Consensus 47 ~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~-----~~~~~~lil~Ptr 121 (249)
T 3ber_A 47 DLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLET-----PQRLFALVLTPTR 121 (249)
T ss_dssp GGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHS-----CCSSCEEEECSSH
T ss_pred HcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcC-----CCCceEEEEeCCH
Confidence 68899999999999999999999999999999999999999999999999999999988663 3467899999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcC-cCCccCCccEEEEcCcccc
Q psy16633 102 ELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAK-TLDLKSSLEIVIIDEADLV 180 (540)
Q Consensus 102 ~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~-~~~~~~~l~~lViDEah~l 180 (540)
+|+.|+++.++.++... ++.+..+.|+.....+...+..+++|+|+||+++.+++... ...+ ..+++||+||||++
T Consensus 122 ~L~~q~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l-~~~~~lViDEah~l 198 (249)
T 3ber_A 122 ELAFQISEQFEALGSSI--GVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNL-RALKYLVMDEADRI 198 (249)
T ss_dssp HHHHHHHHHHHHHHGGG--TCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCC-TTCCEEEECSHHHH
T ss_pred HHHHHHHHHHHHHhccC--CeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCc-cccCEEEEcChhhh
Confidence 99999999999998776 57777888887766666666788999999999999998874 3444 88999999999999
Q ss_pred ccCCcHHHHHHHHHhCCcccceeeEeeeccHHHHHHHHHhcCCCeEEEec
Q psy16633 181 FSFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLE 230 (540)
Q Consensus 181 ~~~~~~~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~ 230 (540)
.+++|...+..++..+++..|+++||||+++.+..+...++.+|..+.+.
T Consensus 199 ~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v~ 248 (249)
T 3ber_A 199 LNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS 248 (249)
T ss_dssp HHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEECC
T ss_pred hccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEec
Confidence 99999999999999999899999999999999999999999999988653
No 56
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=8.8e-36 Score=325.27 Aligned_cols=304 Identities=17% Similarity=0.192 Sum_probs=188.1
Q ss_pred CChHHHHHHHHHHhc----C-CcEEEEcCCCchHHHHHHHHHHHHHHhhcc--cccCCCeEEEEEcCcHHHHHHHH-HHH
Q psy16633 40 EPTLIQERAIPLILQ----N-KDVLVRARTGSGKTGAFAIPMIQKIINLKQ--TAQVQETKALVLSPSKELCNQLH-KNI 111 (540)
Q Consensus 40 ~pt~~Q~~ai~~il~----g-kd~li~a~TGsGKT~a~~ipil~~l~~~~~--~~~~~~~~vlil~Pt~~La~q~~-~~l 111 (540)
.|+++|.++++.+++ | +++++.++||||||+++ ++++..++...- .....+.++||++||++|+.|+. +.+
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~-~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVA-FQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHH-HHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHH-HHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 799999999999886 4 56999999999999985 455555554210 00125789999999999999998 666
Q ss_pred HHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcC----cCCccCCccEEEEcCccccccCCcHH
Q psy16633 112 QELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAK----TLDLKSSLEIVIIDEADLVFSFGYED 187 (540)
Q Consensus 112 ~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~----~~~~~~~l~~lViDEah~l~~~~~~~ 187 (540)
+.++. .+..+.++ ......+|+|+||++|....... .+.. ..+++||+||||++...+ ..
T Consensus 257 ~~~~~------~~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~-~~~~lvIiDEaH~~~~~~-~~ 320 (590)
T 3h1t_A 257 TPFGD------ARHKIEGG--------KVVKSREIYFAIYQSIASDERRPGLYKEFPQ-DFFDLIIIDECHRGSARD-NS 320 (590)
T ss_dssp TTTCS------SEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCT-TSCSEEEESCCC---------
T ss_pred Hhcch------hhhhhhcc--------CCCCCCcEEEEEhhhhccccccccccccCCC-CccCEEEEECCccccccc-hH
Confidence 65432 22333322 12256799999999998876422 2333 678999999999987643 24
Q ss_pred HHHHHHHhCCcccceeeEeeeccHHHHHHHHHhcCCCe------------------EEEecCCCC----CCC-C------
Q psy16633 188 DMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPV------------------ILKLEEPAI----APV-S------ 238 (540)
Q Consensus 188 ~l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~l~~p~------------------~i~~~~~~~----~~~-~------ 238 (540)
.+..++..++. .++++||||+..........++..+. ...+..... ... .
T Consensus 321 ~~~~il~~~~~-~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (590)
T 3h1t_A 321 NWREILEYFEP-AFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFG 399 (590)
T ss_dssp -CHHHHHHSTT-SEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC--------------
T ss_pred HHHHHHHhCCc-ceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccc
Confidence 56677777764 57999999987433222222222222 111111000 000 0
Q ss_pred -CeEEEEEEcCc-------ccHHH----HHHHHHHhcccCCcEEEEecChhhHHHHHHHHHhCCCc--------eEEeCC
Q psy16633 239 -QLAHYHILAQE-------DEKAT----ILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKIS--------TCVLNS 298 (540)
Q Consensus 239 -~l~~~~~~~~~-------~~k~~----~l~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~--------~~~l~~ 298 (540)
.+......... ..+.. .+..+++.....+++||||++++.|+.++..|.+.+.. +..+||
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g 479 (590)
T 3h1t_A 400 REIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTS 479 (590)
T ss_dssp ---------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSS
T ss_pred cccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeC
Confidence 00000000000 00111 12233333344579999999999999999999876442 678899
Q ss_pred CCCHHHHHHHHHHHhcCCcc---EEEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEeCCCCCCcccchh
Q psy16633 299 ELPAKARCHAVYQFNQGLYD---VIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIH 375 (540)
Q Consensus 299 ~l~~~~r~~i~~~F~~g~~~---iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiq 375 (540)
.++. .|..+++.|++|..+ |||||+ ++++|+|+|++++||+++.|.|...|+|
T Consensus 480 ~~~~-~r~~~l~~F~~~~~~~~~ilvtt~-----------------------~l~~GiDip~v~~Vi~~~~~~s~~~~~Q 535 (590)
T 3h1t_A 480 EEGK-IGKGHLSRFQELETSTPVILTTSQ-----------------------LLTTGVDAPTCKNVVLARVVNSMSEFKQ 535 (590)
T ss_dssp TTHH-HHHHHHHHHHCTTCCCCCEEEESS-----------------------TTTTTCCCTTEEEEEEESCCCCHHHHHH
T ss_pred CChH-HHHHHHHHHhCCCCCCCEEEEECC-----------------------hhhcCccchheeEEEEEecCCChHHHHH
Confidence 8764 799999999998876 899999 9999999999999999999999999999
Q ss_pred ccccccCCCC
Q psy16633 376 RAGRTARGKN 385 (540)
Q Consensus 376 r~GRagR~g~ 385 (540)
|+||+||.+.
T Consensus 536 ~iGR~~R~~~ 545 (590)
T 3h1t_A 536 IVGRGTRLRE 545 (590)
T ss_dssp HHTTSCCCBG
T ss_pred HHhhhcccCc
Confidence 9999999875
No 57
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=6.8e-35 Score=281.10 Aligned_cols=201 Identities=32% Similarity=0.498 Sum_probs=169.4
Q ss_pred cCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcH
Q psy16633 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSK 101 (540)
Q Consensus 22 ~~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~ 101 (540)
+++|++.+++++.++||..||++|+++++.+++|+|+++.||||||||++|++|+++.+.. ...+.++||++||+
T Consensus 34 ~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~-----~~~~~~~lil~Pt~ 108 (237)
T 3bor_A 34 DMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEI-----EFKETQALVLAPTR 108 (237)
T ss_dssp GSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCT-----TSCSCCEEEECSSH
T ss_pred hcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHh-----cCCCceEEEEECcH
Confidence 4789999999999999999999999999999999999999999999999999999988633 13567999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhC-CCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCcccc
Q psy16633 102 ELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVE-RPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLV 180 (540)
Q Consensus 102 ~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~-~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l 180 (540)
+|+.|+++.++.++... .+.+..+.|+.....+...+.. .++|+|+||+++.+++..+...+ ..+++||+||||++
T Consensus 109 ~L~~q~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~-~~~~~lViDEah~~ 185 (237)
T 3bor_A 109 ELAQQIQKVILALGDYM--GATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSP-KWIKMFVLDEADEM 185 (237)
T ss_dssp HHHHHHHHHHHHHTTTT--TCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCS-TTCCEEEEESHHHH
T ss_pred HHHHHHHHHHHHHhhhc--CceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCc-ccCcEEEECCchHh
Confidence 99999999999988665 5666667777665554444434 48999999999999998877666 88999999999999
Q ss_pred ccCCcHHHHHHHHHhCCcccceeeEeeeccHHHHHHHHHhcCCCeEEEec
Q psy16633 181 FSFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLE 230 (540)
Q Consensus 181 ~~~~~~~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~ 230 (540)
.+++|...+..++..++...|++++|||+++.+..+...++.+|..+.+.
T Consensus 186 ~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 186 LSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp HHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred hccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEec
Confidence 99999999999999999999999999999999999999999999988654
No 58
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=2.1e-34 Score=277.40 Aligned_cols=214 Identities=31% Similarity=0.465 Sum_probs=182.6
Q ss_pred CCccchhcccCCccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhccccc
Q psy16633 9 EPTLIQVYFELPFTFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQ 88 (540)
Q Consensus 9 ~~~~~~~~~~~~~~~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~ 88 (540)
++..+..|++ ++|+++++++|.++||..|+++|.++++.+++|+|+++.+|||||||++|++|+++.+..... ..
T Consensus 20 ~~~~~~~f~~----~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~-~~ 94 (236)
T 2pl3_A 20 NVNEITRFSD----FPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQW-TS 94 (236)
T ss_dssp CGGGCSBGGG----SCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTC-CG
T ss_pred CCcccCCHhh----cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcc-cc
Confidence 4455555554 779999999999999999999999999999999999999999999999999999998875321 12
Q ss_pred CCCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCc-CCccC
Q psy16633 89 VQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKT-LDLKS 167 (540)
Q Consensus 89 ~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~-~~~~~ 167 (540)
..+.++||++||++|+.|+++.++.++... ++.+..+.|+.....+...+ .+++|+|+||+++.+++.... ..+ .
T Consensus 95 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~-~ 170 (236)
T 2pl3_A 95 TDGLGVLIISPTRELAYQTFEVLRKVGKNH--DFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHA-T 170 (236)
T ss_dssp GGCCCEEEECSSHHHHHHHHHHHHHHTTTS--SCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCC-T
T ss_pred cCCceEEEEeCCHHHHHHHHHHHHHHhCCC--CeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCccc-c
Confidence 357789999999999999999999987655 56777777876655444444 578999999999999987754 444 8
Q ss_pred CccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEeeeccHHHHHHHHHhcCCCeEEEecC
Q psy16633 168 SLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEE 231 (540)
Q Consensus 168 ~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~ 231 (540)
+++++|+||||++.+++|...+..++..+++..|+++||||+++.+..+...++.+|..+.+.+
T Consensus 171 ~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 234 (236)
T 2pl3_A 171 DLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVHE 234 (236)
T ss_dssp TCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECCC
T ss_pred cccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeCC
Confidence 8999999999999999999999999999999999999999999999999999999999887653
No 59
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=7.5e-35 Score=284.99 Aligned_cols=208 Identities=32% Similarity=0.468 Sum_probs=179.7
Q ss_pred hhcccCCc-cCC--CCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCC
Q psy16633 14 QVYFELPF-TFT--LFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ 90 (540)
Q Consensus 14 ~~~~~~~~-~~~--L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~ 90 (540)
.++.+..| +++ |++++++++.++||..|+++|.++++.++.|+|++++||||||||++|++|+++.+...+. ....
T Consensus 47 ~~~~~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~-~~~~ 125 (262)
T 3ly5_A 47 GAFEDTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRF-MPRN 125 (262)
T ss_dssp CBSGGGCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTC-CGGG
T ss_pred cccccCChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccc-cccC
Confidence 34555555 455 9999999999999999999999999999999999999999999999999999999876321 1235
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCc-CCccCCc
Q psy16633 91 ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKT-LDLKSSL 169 (540)
Q Consensus 91 ~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~-~~~~~~l 169 (540)
+.++||++||++|+.|+++.++.++... .+.+..+.|+.....+...+..+++|+|+||+++.+++.... ..+ .++
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~-~~l 202 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTHH--VHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMY-KNL 202 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTC--CSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCC-TTC
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhc--CceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCccc-ccC
Confidence 7789999999999999999999998765 567777888877666666666789999999999999988764 444 889
Q ss_pred cEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEeeeccHHHHHHHHHhcCCCe
Q psy16633 170 EIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPV 225 (540)
Q Consensus 170 ~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~l~~p~ 225 (540)
++|||||||++.+++|...+..++..++..+|+++||||+++.+..+.+..+.++.
T Consensus 203 ~~lViDEah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 203 QCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp CEEEECSHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred CEEEEcChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999998887654
No 60
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=6.3e-35 Score=284.17 Aligned_cols=215 Identities=26% Similarity=0.432 Sum_probs=184.3
Q ss_pred cchhcccCCccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhccc----c
Q psy16633 12 LIQVYFELPFTFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQT----A 87 (540)
Q Consensus 12 ~~~~~~~~~~~~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~----~ 87 (540)
++..|.+ ++|++.++++|.++||..||++|.++++.+++|+|+++.||||||||++|++|+++.+...... .
T Consensus 21 ~~~~f~~----l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~ 96 (253)
T 1wrb_A 21 VIENFDE----LKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYS 96 (253)
T ss_dssp CCCSSGG----GSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------
T ss_pred ccCCHhh----CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhcccccccc
Confidence 5555555 6789999999999999999999999999999999999999999999999999999998753211 1
Q ss_pred cCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccC
Q psy16633 88 QVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKS 167 (540)
Q Consensus 88 ~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~ 167 (540)
...+.++||++||++|+.|+++.++.++... .+.+..+.|+.....+...+..+++|+|+||+++.+++......+ .
T Consensus 97 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~-~ 173 (253)
T 1wrb_A 97 KTAYPKCLILAPTRELAIQILSESQKFSLNT--PLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISL-E 173 (253)
T ss_dssp CCBCCSEEEECSSHHHHHHHHHHHHHHHTTS--SCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCC-T
T ss_pred ccCCceEEEEECCHHHHHHHHHHHHHHhccC--CceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCCh-h
Confidence 1245799999999999999999999988765 577777888877666666677789999999999999998877666 8
Q ss_pred CccEEEEcCccccccCCcHHHHHHHHHh--CCc--ccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCC
Q psy16633 168 SLEIVIIDEADLVFSFGYEDDMKAVLKF--LPK--LYQAILASATLSEDVLSLKHLILRNPVILKLEEPA 233 (540)
Q Consensus 168 ~l~~lViDEah~l~~~~~~~~l~~i~~~--l~~--~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~ 233 (540)
.++++|+||||++.+++|...+..++.. ++. ..|+++||||+++.+..+...++.+|..+.+....
T Consensus 174 ~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~ 243 (253)
T 1wrb_A 174 FCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVG 243 (253)
T ss_dssp TCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC---
T ss_pred hCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCC
Confidence 9999999999999999999999999985 444 68999999999999999999999999998887654
No 61
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1.6e-34 Score=272.13 Aligned_cols=199 Identities=28% Similarity=0.470 Sum_probs=177.9
Q ss_pred cCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcH
Q psy16633 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSK 101 (540)
Q Consensus 22 ~~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~ 101 (540)
+++|++.+++++.++||..|+++|+++++.+++|+|+++.+|||||||++|++|+++.+.. ...+.++||++||+
T Consensus 7 ~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~-----~~~~~~~lil~Pt~ 81 (206)
T 1vec_A 7 DYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDL-----KKDNIQAMVIVPTR 81 (206)
T ss_dssp GSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCT-----TSCSCCEEEECSCH
T ss_pred hcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcc-----cCCCeeEEEEeCcH
Confidence 5789999999999999999999999999999999999999999999999999999987633 23567899999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccc
Q psy16633 102 ELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVF 181 (540)
Q Consensus 102 ~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~ 181 (540)
+|+.|+++.+..++...+ .+.+..+.|+.....+...+..+++|+|+||+++.+.+..+...+ .+++++|+||||++.
T Consensus 82 ~L~~q~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~-~~~~~lViDEah~~~ 159 (206)
T 1vec_A 82 ELALQVSQICIQVSKHMG-GAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKV-DHVQMIVLDEADKLL 159 (206)
T ss_dssp HHHHHHHHHHHHHTTTSS-SCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCC-TTCCEEEEETHHHHT
T ss_pred HHHHHHHHHHHHHHhhcC-CceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCc-ccCCEEEEEChHHhH
Confidence 999999999999876542 567777888777666555666789999999999999998876666 899999999999999
Q ss_pred cCCcHHHHHHHHHhCCcccceeeEeeeccHHHHHHHHHhcCCCeEE
Q psy16633 182 SFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVIL 227 (540)
Q Consensus 182 ~~~~~~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i 227 (540)
+.+|...+..++..+++..|+++||||+++.+..+...++.+|..+
T Consensus 160 ~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 160 SQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp STTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred hhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 9999999999999999899999999999999999999999999865
No 62
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=1.5e-34 Score=315.13 Aligned_cols=294 Identities=19% Similarity=0.237 Sum_probs=215.8
Q ss_pred CHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHH
Q psy16633 26 FCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCN 105 (540)
Q Consensus 26 ~~~i~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~ 105 (540)
....++++.++++ |..+ ......++|++++++||||||||. ++++.+... ...+|++|||+||.
T Consensus 130 ~~d~l~~i~dl~~--p~~~--~p~ar~l~rk~vlv~apTGSGKT~----~al~~l~~~--------~~gl~l~PtR~LA~ 193 (677)
T 3rc3_A 130 CKDDLRKISDLRI--PPNW--YPDARAMQRKIIFHSGPTNSGKTY----HAIQKYFSA--------KSGVYCGPLKLLAH 193 (677)
T ss_dssp CHHHHHHHTBCCC--GGGG--CHHHHTSCCEEEEEECCTTSSHHH----HHHHHHHHS--------SSEEEEESSHHHHH
T ss_pred CHHHHHHHhhccC--hhhh--CHHHHhcCCCEEEEEcCCCCCHHH----HHHHHHHhc--------CCeEEEeCHHHHHH
Confidence 4455566655544 4433 333456789999999999999997 455555442 23499999999999
Q ss_pred HHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCCc
Q psy16633 106 QLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGY 185 (540)
Q Consensus 106 q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~ 185 (540)
|+++.+... ++.+..++|+....... -....+++++|++.+ .+...++++||||||++.+.++
T Consensus 194 Qi~~~l~~~------g~~v~lltG~~~~iv~T--pGr~~~il~~T~e~~---------~l~~~v~lvVIDEaH~l~d~~~ 256 (677)
T 3rc3_A 194 EIFEKSNAA------GVPCDLVTGEERVTVQP--NGKQASHVSCTVEMC---------SVTTPYEVAVIDEIQMIRDPAR 256 (677)
T ss_dssp HHHHHHHHT------TCCEEEECSSCEECCST--TCCCCSEEEEEGGGC---------CSSSCEEEEEECSGGGGGCTTT
T ss_pred HHHHHHHhc------CCcEEEEECCeeEEecC--CCcccceeEecHhHh---------hhcccCCEEEEecceecCCccc
Confidence 999998875 45667788876542110 011367889988653 1237789999999999999999
Q ss_pred HHHHHHHHHhCC-cccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcCcccHHHHHHHHHHhcc
Q psy16633 186 EDDMKAVLKFLP-KLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNL 264 (540)
Q Consensus 186 ~~~l~~i~~~l~-~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~ll~~~~ 264 (540)
+..+..++..++ ...+++++|||.+ .+..+.... ..+..+...... ..+. +.... +..+ ..
T Consensus 257 g~~~~~~l~~l~~~~i~il~~SAT~~-~i~~l~~~~-~~~~~v~~~~r~----~~l~---~~~~~------l~~l---~~ 318 (677)
T 3rc3_A 257 GWAWTRALLGLCAEEVHLCGEPAAID-LVMELMYTT-GEEVEVRDYKRL----TPIS---VLDHA------LESL---DN 318 (677)
T ss_dssp HHHHHHHHHHCCEEEEEEEECGGGHH-HHHHHHHHH-TCCEEEEECCCS----SCEE---ECSSC------CCSG---GG
T ss_pred hHHHHHHHHccCccceEEEeccchHH-HHHHHHHhc-CCceEEEEeeec----chHH---HHHHH------HHHH---Hh
Confidence 999999999888 6889999999953 344444333 233333211110 0111 00000 0000 11
Q ss_pred cCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhc--CCccEEEeCCCCccCCcccccccccccc
Q psy16633 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQ--GLYDVIIASDEKALETPQINSTNNRKRK 342 (540)
Q Consensus 265 ~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~--g~~~iLIaT~~~~~~~~~~~~~~~~~~~ 342 (540)
.....+|||++++.++.++..|++.++.+..+||+|++.+|..+++.|+. |.++|||||+
T Consensus 319 ~~~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATd------------------ 380 (677)
T 3rc3_A 319 LRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATD------------------ 380 (677)
T ss_dssp CCTTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECG------------------
T ss_pred cCCCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCc------------------
Confidence 23456899999999999999999999999999999999999999999999 8999999999
Q ss_pred cCccccccccCCCCCcCEEEeCCC--------------CCCcccchhccccccCCCCC---ceEEEEec
Q psy16633 343 RDKESGVSRGIDFQFVSNVINFDF--------------PLDIQCYIHRAGRTARGKNQ---GTALSFVS 394 (540)
Q Consensus 343 ~~~~~~~~~GiD~~~v~~Vi~~d~--------------p~s~~~yiqr~GRagR~g~~---g~~i~~~~ 394 (540)
++++|||+ ++++||++|+ |.|..+|+||+|||||.|.. |.++.+..
T Consensus 381 -----i~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~ 443 (677)
T 3rc3_A 381 -----AIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNH 443 (677)
T ss_dssp -----GGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESST
T ss_pred -----HHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEec
Confidence 99999999 8999999999 78999999999999999965 56655543
No 63
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=1.3e-34 Score=277.92 Aligned_cols=210 Identities=24% Similarity=0.377 Sum_probs=178.9
Q ss_pred CCccchhcccCCccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhccccc
Q psy16633 9 EPTLIQVYFELPFTFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQ 88 (540)
Q Consensus 9 ~~~~~~~~~~~~~~~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~ 88 (540)
.|.....|.+ ++|++.+++++.++||..|+++|+++++.+++|+|+++.+|||||||++|++|+++.+...
T Consensus 19 ~~~~~~~f~~----l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~----- 89 (230)
T 2oxc_A 19 LLAEPADFES----LLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLE----- 89 (230)
T ss_dssp -----CCGGG----GTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT-----
T ss_pred CCCCCCCHhh----cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc-----
Confidence 3444444444 7899999999999999999999999999999999999999999999999999999887432
Q ss_pred CCCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCC
Q psy16633 89 VQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSS 168 (540)
Q Consensus 89 ~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 168 (540)
..+.++||++||++|+.|+++.++.++... .++.+..+.|+.....+...+ .+++|+|+||+++.+++..+...+ .+
T Consensus 90 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~~-~~ 166 (230)
T 2oxc_A 90 NLSTQILILAPTREIAVQIHSVITAIGIKM-EGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLNP-GS 166 (230)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTS-TTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTSSCG-GG
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHHhccc-CCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCCccc-cc
Confidence 356899999999999999999999987543 256777788877655544444 478999999999999998877666 88
Q ss_pred ccEEEEcCccccccCC-cHHHHHHHHHhCCcccceeeEeeeccHHHHHHHHHhcCCCeEEEec
Q psy16633 169 LEIVIIDEADLVFSFG-YEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLE 230 (540)
Q Consensus 169 l~~lViDEah~l~~~~-~~~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~ 230 (540)
++++|+||||++.++| |...+..++..++...|++++|||+++.+..+...++.+|..+.++
T Consensus 167 ~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~~ 229 (230)
T 2oxc_A 167 IRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRLN 229 (230)
T ss_dssp CCEEEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC-
T ss_pred CCEEEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEcC
Confidence 9999999999999997 9999999999999899999999999999999999999999887653
No 64
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.1e-34 Score=280.95 Aligned_cols=223 Identities=29% Similarity=0.430 Sum_probs=185.2
Q ss_pred ccccccCCccchhcccCCccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHh
Q psy16633 3 AKLGWLEPTLIQVYFELPFTFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIIN 82 (540)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~ 82 (540)
.+.|...|.++..|.+..-+++|++.+++++.++||..||++|.++++.+++|+|+++.||||||||++|++|+++.+..
T Consensus 14 ~~~~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~ 93 (245)
T 3dkp_A 14 HVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQ 93 (245)
T ss_dssp EEESSSCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCS
T ss_pred EecCCCCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhh
Confidence 34566788888888886546789999999999999999999999999999999999999999999999999999988743
Q ss_pred hcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCccccc-chhhhhCCCCEEEEChHHHHHHHhcC
Q psy16633 83 LKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSV-QEPLLVERPDIVVATPARALAHLKAK 161 (540)
Q Consensus 83 ~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~-~~~~l~~~~~Ivv~Tp~~l~~~l~~~ 161 (540)
. ...+.++||++||++|+.|+++.+..++... ++.+..+.|+..... .......+++|+|+||+++.+++...
T Consensus 94 ~----~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~ 167 (245)
T 3dkp_A 94 P----ANKGFRALIISPTRELASQIHRELIKISEGT--GFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQD 167 (245)
T ss_dssp C----CSSSCCEEEECSSHHHHHHHHHHHHHHTTTS--CCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSS
T ss_pred c----ccCCceEEEEeCCHHHHHHHHHHHHHHhccc--CceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhC
Confidence 1 2357799999999999999999999998765 455555555433222 22233467899999999999999876
Q ss_pred c--CCccCCccEEEEcCcccccc---CCcHHHHHHHHHhCC-cccceeeEeeeccHHHHHHHHHhcCCCeEEEecCC
Q psy16633 162 T--LDLKSSLEIVIIDEADLVFS---FGYEDDMKAVLKFLP-KLYQAILASATLSEDVLSLKHLILRNPVILKLEEP 232 (540)
Q Consensus 162 ~--~~~~~~l~~lViDEah~l~~---~~~~~~l~~i~~~l~-~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~ 232 (540)
. ..+ .++++||+||||++.+ .+|...+..++..+. ...|+++||||+++++..+...++.+|..+.+...
T Consensus 168 ~~~~~~-~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~~ 243 (245)
T 3dkp_A 168 PPGIDL-ASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGAR 243 (245)
T ss_dssp SCSCCC-TTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC-
T ss_pred CCCccc-ccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCCC
Confidence 3 444 8899999999999988 468888888877764 57899999999999999999999999999887653
No 65
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=2.7e-34 Score=274.31 Aligned_cols=210 Identities=30% Similarity=0.510 Sum_probs=175.3
Q ss_pred CccchhcccCCccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccC
Q psy16633 10 PTLIQVYFELPFTFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89 (540)
Q Consensus 10 ~~~~~~~~~~~~~~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~ 89 (540)
|+.+..|++ ++|++.+++++.++||..|+++|.++++.+++|+++++.+|||||||++|++|+++.+.. ..
T Consensus 10 ~~~~~~f~~----l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~-----~~ 80 (224)
T 1qde_A 10 DKVVYKFDD----MELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT-----SV 80 (224)
T ss_dssp CCCCCCGGG----GTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT-----TC
T ss_pred CcccCChhh----cCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhc-----cC
Confidence 444555555 679999999999999999999999999999999999999999999999999999988743 23
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCc
Q psy16633 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSL 169 (540)
Q Consensus 90 ~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l 169 (540)
.+.++||++||++|+.|+++.+..++... ++.+..+.|+.....+...+. .++|+|+||+++.+.+......+ .++
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~-~~~iiv~Tp~~l~~~~~~~~~~~-~~~ 156 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHM--DIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRT-DKI 156 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTS--CCCEEEECC----------CT-TCSEEEECHHHHHHHHHTTSSCC-TTC
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhccc--CceEEEEeCCcchHHHHhcCC-CCCEEEECHHHHHHHHHhCCcch-hhC
Confidence 56799999999999999999999987665 567777777766554444443 48999999999999998877666 889
Q ss_pred cEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEeeeccHHHHHHHHHhcCCCeEEEecCC
Q psy16633 170 EIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEP 232 (540)
Q Consensus 170 ~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~ 232 (540)
+++|+||||++.+++|...+..++..+++..|+++||||+++.+..+...++.+|..+.+...
T Consensus 157 ~~iViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~~ 219 (224)
T 1qde_A 157 KMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKD 219 (224)
T ss_dssp CEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC----
T ss_pred cEEEEcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 999999999999999999999999999999999999999999999999999999998877654
No 66
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=4.1e-34 Score=269.47 Aligned_cols=202 Identities=36% Similarity=0.538 Sum_probs=179.2
Q ss_pred cCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcH
Q psy16633 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSK 101 (540)
Q Consensus 22 ~~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~ 101 (540)
+++|++++++++.++||..|+++|+++++.+++|+++++.+|||||||++|++|+++.+.... ....+.++||++||+
T Consensus 5 ~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~--~~~~~~~~lil~P~~ 82 (207)
T 2gxq_A 5 DFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQ--ERGRKPRALVLTPTR 82 (207)
T ss_dssp GSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCC--CTTCCCSEEEECSSH
T ss_pred hcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhcc--ccCCCCcEEEEECCH
Confidence 578999999999999999999999999999999999999999999999999999998875321 123578899999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccc
Q psy16633 102 ELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVF 181 (540)
Q Consensus 102 ~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~ 181 (540)
+|+.|+++.+..++.. +.+..+.|+.....+...+..+++|+|+||+++.+++..+...+ .+++++|+||||++.
T Consensus 83 ~L~~q~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~-~~~~~iViDEah~~~ 157 (207)
T 2gxq_A 83 ELALQVASELTAVAPH----LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDL-SRVEVAVLDEADEML 157 (207)
T ss_dssp HHHHHHHHHHHHHCTT----SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCC-TTCSEEEEESHHHHH
T ss_pred HHHHHHHHHHHHHhhc----ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcch-hhceEEEEEChhHhh
Confidence 9999999999988643 56677778777666666666789999999999999998877666 889999999999999
Q ss_pred cCCcHHHHHHHHHhCCcccceeeEeeeccHHHHHHHHHhcCCCeEEEec
Q psy16633 182 SFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLE 230 (540)
Q Consensus 182 ~~~~~~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~ 230 (540)
+.+|...+..++..+++..|+++||||+++.+..+...++.+|..+.+.
T Consensus 158 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~~ 206 (207)
T 2gxq_A 158 SMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINVI 206 (207)
T ss_dssp HTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEECC
T ss_pred ccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEcC
Confidence 9999999999999999899999999999999999999999999987653
No 67
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=4.1e-34 Score=272.31 Aligned_cols=216 Identities=26% Similarity=0.407 Sum_probs=176.5
Q ss_pred cccCCccchhcccCCc-cCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhc
Q psy16633 6 GWLEPTLIQVYFELPF-TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLK 84 (540)
Q Consensus 6 ~~~~~~~~~~~~~~~~-~~~L~~~i~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~ 84 (540)
|...+..+.+.....| +++|++.+++++.++||..|+++|.++++.+++|+|+++.+|||+|||++|++|+++.+..
T Consensus 1 g~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~-- 78 (220)
T 1t6n_A 1 GSDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP-- 78 (220)
T ss_dssp -------------CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCC--
T ss_pred CCCCCCCcccccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhc--
Confidence 3344555555555566 7899999999999999999999999999999999999999999999999999999987632
Q ss_pred ccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhh-CCCCEEEEChHHHHHHHhcCcC
Q psy16633 85 QTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLV-ERPDIVVATPARALAHLKAKTL 163 (540)
Q Consensus 85 ~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~-~~~~Ivv~Tp~~l~~~l~~~~~ 163 (540)
...+.++||++||++|+.|+++.++.+..... ++.+..+.|+.....+...+. ..++|+|+||+++.+++.....
T Consensus 79 ---~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~ 154 (220)
T 1t6n_A 79 ---VTGQVSVLVMCHTRELAFQISKEYERFSKYMP-NVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSL 154 (220)
T ss_dssp ---CTTCCCEEEECSCHHHHHHHHHHHHHHTTTST-TCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSS
T ss_pred ---cCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCC-CceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCC
Confidence 12456899999999999999999999876542 567777888776555444443 4579999999999999988776
Q ss_pred CccCCccEEEEcCcccccc-CCcHHHHHHHHHhCCcccceeeEeeeccHHHHHHHHHhcCCCeEEE
Q psy16633 164 DLKSSLEIVIIDEADLVFS-FGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILK 228 (540)
Q Consensus 164 ~~~~~l~~lViDEah~l~~-~~~~~~l~~i~~~l~~~~q~il~SATl~~~~~~~~~~~l~~p~~i~ 228 (540)
.+ .+++++|+||||++.+ .++...+..++..+++..|++++|||+++.+..+...++.+|..+.
T Consensus 155 ~~-~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 155 NL-KHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp CC-TTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred Cc-ccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 66 8999999999999987 4788899999999998999999999999999999999999998764
No 68
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=1.5e-33 Score=321.47 Aligned_cols=320 Identities=17% Similarity=0.199 Sum_probs=220.9
Q ss_pred CChHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhh
Q psy16633 40 EPTLIQERAIPLILQN--KDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMK 117 (540)
Q Consensus 40 ~pt~~Q~~ai~~il~g--kd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~ 117 (540)
.|+|+|.+++..++.. .++++.++||+|||.+++..+...+.. ....++||+||+ +|+.||...+.+.+
T Consensus 153 ~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~------g~~~rvLIVvP~-sLl~Qw~~E~~~~f-- 223 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLS------GAAERVLIIVPE-TLQHQWLVEMLRRF-- 223 (968)
T ss_dssp CCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHT------SSCCCEEEECCT-TTHHHHHHHHHHHS--
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHh------CCCCeEEEEeCH-HHHHHHHHHHHHHh--
Confidence 6899999999988874 579999999999999887766555432 345689999999 99999999887654
Q ss_pred cCCCceEEEeecCcccccc--hhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCCcH--HHHHHHH
Q psy16633 118 CSRDVKCVDISEQVDVSVQ--EPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYE--DDMKAVL 193 (540)
Q Consensus 118 ~~~~i~~~~~~~~~~~~~~--~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~~--~~l~~i~ 193 (540)
++.+..+.++...... ........+|+|+|++.+..............+++|||||||++...+.. .....+.
T Consensus 224 ---~l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~ 300 (968)
T 3dmq_A 224 ---NLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIE 300 (968)
T ss_dssp ---CCCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHH
T ss_pred ---CCCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHH
Confidence 2344444443211100 01112357999999998754321111111257899999999998755422 1122222
Q ss_pred HhCCcccceeeEeeeccH----HHHHHHHH----------------------------hcC-------------------
Q psy16633 194 KFLPKLYQAILASATLSE----DVLSLKHL----------------------------ILR------------------- 222 (540)
Q Consensus 194 ~~l~~~~q~il~SATl~~----~~~~~~~~----------------------------~l~------------------- 222 (540)
.......+++++|||+.. ++..+... ...
T Consensus 301 ~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~ 380 (968)
T 3dmq_A 301 QLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQ 380 (968)
T ss_dssp HHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTT
T ss_pred HHhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcch
Confidence 222234579999999842 11111100 000
Q ss_pred ---------------------------------CCeEEEecCCCCC--CCCCeEEEEE----------------------
Q psy16633 223 ---------------------------------NPVILKLEEPAIA--PVSQLAHYHI---------------------- 245 (540)
Q Consensus 223 ---------------------------------~p~~i~~~~~~~~--~~~~l~~~~~---------------------- 245 (540)
....+........ +......+.+
T Consensus 381 ~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (968)
T 3dmq_A 381 DIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSA 460 (968)
T ss_dssp CSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSG
T ss_pred hhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhh
Confidence 0000000000000 0000111111
Q ss_pred -----------------------EcCcccHHHHHHHHHHhcccCCcEEEEecChhhHHHHHHHHHh-CCCceEEeCCCCC
Q psy16633 246 -----------------------LAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQ-FKISTCVLNSELP 301 (540)
Q Consensus 246 -----------------------~~~~~~k~~~l~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~-~~~~~~~l~~~l~ 301 (540)
.+....|...+..+++. ..++++||||+++..++.++..|.. .|+++..+||+|+
T Consensus 461 ~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~-~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~ 539 (968)
T 3dmq_A 461 EDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS-HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMS 539 (968)
T ss_dssp GGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH-TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSC
T ss_pred HHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh-CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 12234577778888775 3577999999999999999999994 6999999999999
Q ss_pred HHHHHHHHHHHhcCC--ccEEEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEeCCCCCCcccchhcccc
Q psy16633 302 AKARCHAVYQFNQGL--YDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGR 379 (540)
Q Consensus 302 ~~~r~~i~~~F~~g~--~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GR 379 (540)
+.+|..+++.|++|. ++|||||+ ++++|+|+|++++||+||+|+++..|+||+||
T Consensus 540 ~~~R~~~l~~F~~g~~~~~vLvaT~-----------------------v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR 596 (968)
T 3dmq_A 540 IIERDRAAAWFAEEDTGAQVLLCSE-----------------------IGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR 596 (968)
T ss_dssp TTHHHHHHHHHHSTTSSCEEEECSC-----------------------CTTCSSCCTTCCEEECSSCCSSHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCcccEEEecc-----------------------hhhcCCCcccCcEEEEecCCCCHHHHHHHhhc
Confidence 999999999999998 99999999 99999999999999999999999999999999
Q ss_pred ccCCCCCceEEEEecc
Q psy16633 380 TARGKNQGTALSFVSL 395 (540)
Q Consensus 380 agR~g~~g~~i~~~~~ 395 (540)
+||.|+.|.+++++..
T Consensus 597 ~~R~Gq~~~v~v~~~~ 612 (968)
T 3dmq_A 597 LDRIGQAHDIQIHVPY 612 (968)
T ss_dssp TSCSSSCSCCEEEEEE
T ss_pred cccCCCCceEEEEEec
Confidence 9999999877666543
No 69
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=1.4e-31 Score=284.09 Aligned_cols=321 Identities=17% Similarity=0.143 Sum_probs=232.9
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHH
Q psy16633 36 LGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELT 115 (540)
Q Consensus 36 ~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~ 115 (540)
+|. +|+++|-...-.+.+|+ ++.+.||+|||+++.+|++-..+ .|..+.|++|+..||.|-++.+..+.
T Consensus 72 lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL--------~G~~vhVvT~ndyLA~rdae~m~~l~ 140 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNAL--------IGKGVHLVTVNDYLARRDALWMGPVY 140 (822)
T ss_dssp TSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHT--------TSSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHh--------cCCceEEEeccHHHHHhHHHHHHHHH
Confidence 577 89999999988888887 99999999999999999874442 47779999999999999999999999
Q ss_pred hhcCCCceEEEeecCc------------------------------------------------ccccchhhhhCCCCEE
Q psy16633 116 MKCSRDVKCVDISEQV------------------------------------------------DVSVQEPLLVERPDIV 147 (540)
Q Consensus 116 ~~~~~~i~~~~~~~~~------------------------------------------------~~~~~~~~l~~~~~Iv 147 (540)
... ++++..+.... ......+...-.+||+
T Consensus 141 ~~L--glsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY~~DIt 218 (822)
T 3jux_A 141 LFL--GLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAYLCDVT 218 (822)
T ss_dssp HHT--TCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHHHSSEE
T ss_pred HHh--CCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHhcCCCE
Confidence 988 45555555510 0111111112357999
Q ss_pred EEChHHH-HHHHhcCc-----CCccCCccEEEEcCccccc-cC--------C-------cHHHHHHHHHhCC--------
Q psy16633 148 VATPARA-LAHLKAKT-----LDLKSSLEIVIIDEADLVF-SF--------G-------YEDDMKAVLKFLP-------- 197 (540)
Q Consensus 148 v~Tp~~l-~~~l~~~~-----~~~~~~l~~lViDEah~l~-~~--------~-------~~~~l~~i~~~l~-------- 197 (540)
++|..-| .+.|+.+- ....+.+.+.||||+|.++ +. | ....+..+...+.
T Consensus 219 YgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vd 298 (822)
T 3jux_A 219 YGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVD 298 (822)
T ss_dssp EEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEEC
T ss_pred EccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEE
Confidence 9998775 34444321 1123778999999999744 10 0 0001111111110
Q ss_pred ------------------------------------------------cc------------------------------
Q psy16633 198 ------------------------------------------------KL------------------------------ 199 (540)
Q Consensus 198 ------------------------------------------------~~------------------------------ 199 (540)
+.
T Consensus 299 ek~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GL 378 (822)
T 3jux_A 299 EKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGL 378 (822)
T ss_dssp CSSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGH
T ss_pred cccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHH
Confidence 00
Q ss_pred -------------------------------cceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEE-EEEEc
Q psy16633 200 -------------------------------YQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAH-YHILA 247 (540)
Q Consensus 200 -------------------------------~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~-~~~~~ 247 (540)
.++.+||+|.......+...+.-+ ++.+.... +.....+ ..+..
T Consensus 379 HQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~--vv~IPtnk--p~~R~d~~d~vy~ 454 (822)
T 3jux_A 379 HQAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGME--VVVIPTHK--PMIRKDHDDLVFR 454 (822)
T ss_dssp HHHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCC--EEECCCSS--CCCCEECCCEEES
T ss_pred HHHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCe--EEEECCCC--CcceeecCcEEEe
Confidence 158899999998877776665433 44443221 1122222 24556
Q ss_pred CcccHHHHHHHHHHhc-ccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCC
Q psy16633 248 QEDEKATILYTLLKLN-LVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326 (540)
Q Consensus 248 ~~~~k~~~l~~ll~~~-~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~ 326 (540)
+..+|+..+...+... ..+.++||||+|+..++.++..|.+.|+++.++||+..+.++..+.+.|+.| .|+||||
T Consensus 455 t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATd-- 530 (822)
T 3jux_A 455 TQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATN-- 530 (822)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEET--
T ss_pred cHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcc--
Confidence 7788888887777643 3467999999999999999999999999999999995555555455555554 7999999
Q ss_pred ccCCcccccccccccccCccccccccCCCC--------CcCEEEeCCCCCCcccchhccccccCCCCCceEEEEeccccc
Q psy16633 327 ALETPQINSTNNRKRKRDKESGVSRGIDFQ--------FVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQ 398 (540)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~--------~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e~ 398 (540)
+++||+|++ +..+|||++.|.|.+.|+||+|||||.|.+|.+++|++..|.
T Consensus 531 ---------------------mAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~ 589 (822)
T 3jux_A 531 ---------------------MAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDD 589 (822)
T ss_dssp ---------------------TTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSH
T ss_pred ---------------------hhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHH
Confidence 999999998 666999999999999999999999999999999999998763
No 70
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.98 E-value=6.9e-31 Score=280.96 Aligned_cols=306 Identities=17% Similarity=0.176 Sum_probs=211.1
Q ss_pred CChHHHHHHHHHHh----cCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHH
Q psy16633 40 EPTLIQERAIPLIL----QNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELT 115 (540)
Q Consensus 40 ~pt~~Q~~ai~~il----~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~ 115 (540)
.|+|+|.++++.+. .++++++.++||+|||++++ +++..+... ....++||+|| .+|+.||.+.+.+++
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai-~~i~~~~~~-----~~~~~~LIv~P-~~l~~qw~~e~~~~~ 109 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTI-AVFSDAKKE-----NELTPSLVICP-LSVLKNWEEELSKFA 109 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHH-HHHHHHHHT-----TCCSSEEEEEC-STTHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHH-HHHHHHHhc-----CCCCCEEEEcc-HHHHHHHHHHHHHHC
Confidence 69999999998773 57899999999999999854 444444331 34568999999 568899999999876
Q ss_pred hhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCCcHHHHHHHHHh
Q psy16633 116 MKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKF 195 (540)
Q Consensus 116 ~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~ 195 (540)
. ...+..+.|+... .....++|+|+|++.+.+... +.. ..+++||+||||.+.+.+. .....+..
T Consensus 110 ~----~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~-~~~~~vIvDEaH~~kn~~~--~~~~~l~~ 174 (500)
T 1z63_A 110 P----HLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKE-VEWKYIVIDEAQNIKNPQT--KIFKAVKE 174 (500)
T ss_dssp T----TSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHT-CCEEEEEEETGGGGSCTTS--HHHHHHHT
T ss_pred C----CceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcC-CCcCEEEEeCccccCCHhH--HHHHHHHh
Confidence 3 3455555555421 122467999999999865443 111 4689999999999976542 23344445
Q ss_pred CCcccceeeEeeeccHH----HHHHHHHh--------------------------------cCCCeEEEecCCC---CCC
Q psy16633 196 LPKLYQAILASATLSED----VLSLKHLI--------------------------------LRNPVILKLEEPA---IAP 236 (540)
Q Consensus 196 l~~~~q~il~SATl~~~----~~~~~~~~--------------------------------l~~p~~i~~~~~~---~~~ 236 (540)
++ ..+.+++|||+... +..+.... +-.|..+.....+ ...
T Consensus 175 l~-~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~~ 253 (500)
T 1z63_A 175 LK-SKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIIND 253 (500)
T ss_dssp SC-EEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHTT
T ss_pred hc-cCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhhc
Confidence 54 35679999998421 11111110 1123333322111 000
Q ss_pred CCCeEEEEEEcCc---------------------------------------------------------ccHHHHHHHH
Q psy16633 237 VSQLAHYHILAQE---------------------------------------------------------DEKATILYTL 259 (540)
Q Consensus 237 ~~~l~~~~~~~~~---------------------------------------------------------~~k~~~l~~l 259 (540)
........+.+.. ..|...+..+
T Consensus 254 lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~ 333 (500)
T 1z63_A 254 LPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEI 333 (500)
T ss_dssp SCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHH
Confidence 1111122222221 1233333444
Q ss_pred HHhc-ccCCcEEEEecChhhHHHHHHHHHhC-CCceEEeCCCCCHHHHHHHHHHHhcC-Ccc-EEEeCCCCccCCccccc
Q psy16633 260 LKLN-LVQGKTIIFVNTVDKCYKLKLYLEQF-KISTCVLNSELPAKARCHAVYQFNQG-LYD-VIIASDEKALETPQINS 335 (540)
Q Consensus 260 l~~~-~~~~k~IIF~~s~~~~~~l~~~L~~~-~~~~~~l~~~l~~~~r~~i~~~F~~g-~~~-iLIaT~~~~~~~~~~~~ 335 (540)
+... ..+.++||||++++.+..+...|... |+.+..+||+++..+|..+++.|++| ... +|++|+
T Consensus 334 l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~----------- 402 (500)
T 1z63_A 334 IEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVK----------- 402 (500)
T ss_dssp HHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECC-----------
T ss_pred HHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecc-----------
Confidence 4332 24569999999999999999999885 99999999999999999999999998 555 799999
Q ss_pred ccccccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEE
Q psy16633 336 TNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALS 391 (540)
Q Consensus 336 ~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~ 391 (540)
++++|+|++++++||+||+|+|+..|.||+||++|.|+.+.+.+
T Consensus 403 ------------~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v 446 (500)
T 1z63_A 403 ------------AGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIV 446 (500)
T ss_dssp ------------CC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEE
T ss_pred ------------cccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEE
Confidence 89999999999999999999999999999999999998766543
No 71
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.97 E-value=3.7e-31 Score=299.87 Aligned_cols=327 Identities=15% Similarity=0.112 Sum_probs=217.4
Q ss_pred HHHHHHHHHCC-------CCCChHHHHHHHHHHhc--------------CCcEEEEcCCCchHHHHHHHHHHHHHHhhcc
Q psy16633 27 CIPLQAIAKLG-------WLEPTLIQERAIPLILQ--------------NKDVLVRARTGSGKTGAFAIPMIQKIINLKQ 85 (540)
Q Consensus 27 ~~i~~~l~~~g-------~~~pt~~Q~~ai~~il~--------------gkd~li~a~TGsGKT~a~~ipil~~l~~~~~ 85 (540)
++++..+..+- ...|+++|.+|++.+++ +++++++++||||||+++ ++++..+..
T Consensus 251 ~~ll~~l~~f~~~~~~~~~~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~--- 326 (1038)
T 2w00_A 251 HTLLNVLVNYSVFDSSQTLLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATE--- 326 (1038)
T ss_dssp HHHHHHHHHSEEECTTCCEEECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTT---
T ss_pred HHHHHHHHhheeeccccccccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHh---
Confidence 34555555542 23599999999999876 368999999999999986 666654422
Q ss_pred cccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhh-hCCCCEEEEChHHHHHHHhcCc-C
Q psy16633 86 TAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLL-VERPDIVVATPARALAHLKAKT-L 163 (540)
Q Consensus 86 ~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l-~~~~~Ivv~Tp~~l~~~l~~~~-~ 163 (540)
.....++||+||+++|+.|+.+.+..++... +.++.+.......+ ...++|+|+||++|..++.... .
T Consensus 327 --~~~~~rvLvlvpr~eL~~Q~~~~f~~f~~~~--------v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~ 396 (1038)
T 2w00_A 327 --LDFIDKVFFVVDRKDLDYQTMKEYQRFSPDS--------VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDL 396 (1038)
T ss_dssp --CTTCCEEEEEECGGGCCHHHHHHHHTTSTTC--------SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCC
T ss_pred --cCCCceEEEEeCcHHHHHHHHHHHHHhcccc--------cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccch
Confidence 1234699999999999999999988875321 22333333333334 3568999999999999886543 2
Q ss_pred CccCCccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEeeeccHHHH----HHHHHhcCC----------------
Q psy16633 164 DLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSEDVL----SLKHLILRN---------------- 223 (540)
Q Consensus 164 ~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~SATl~~~~~----~~~~~~l~~---------------- 223 (540)
.......+||+||||++.. ...+..+...+|. .++++||||+..... ......+.+
T Consensus 397 ~~~~~~~lvIiDEAHrs~~---~~~~~~I~~~~p~-a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l 472 (1038)
T 2w00_A 397 PVYNQQVVFIFDECHRSQF---GEAQKNLKKKFKR-YYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKV 472 (1038)
T ss_dssp GGGGSCEEEEEESCCTTHH---HHHHHHHHHHCSS-EEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSS
T ss_pred hccccccEEEEEccchhcc---hHHHHHHHHhCCc-ccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCc
Confidence 1226788999999998653 3446677778875 689999999974221 011111122
Q ss_pred -CeEEEecCCCCC-----CC-C-----CeEEEEEEcCcccHHHHHHHHHHh---c-------ccCCcEEEEecChhhHHH
Q psy16633 224 -PVILKLEEPAIA-----PV-S-----QLAHYHILAQEDEKATILYTLLKL---N-------LVQGKTIIFVNTVDKCYK 281 (540)
Q Consensus 224 -p~~i~~~~~~~~-----~~-~-----~l~~~~~~~~~~~k~~~l~~ll~~---~-------~~~~k~IIF~~s~~~~~~ 281 (540)
|..+........ .. . .+.+......+.....++..++.. . ..++++||||+|+..|..
T Consensus 473 ~p~~v~y~~v~~~~~~~~~e~d~~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~ 552 (1038)
T 2w00_A 473 LKFKVDYNDVRPQFKSLETETDEKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKA 552 (1038)
T ss_dssp CCEEEEECCCCGGGHHHHTCCCHHHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHH
T ss_pred CCeEEEEEeccchhhhccccccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHH
Confidence 222111100000 00 0 000000001111111222233321 1 123589999999999999
Q ss_pred HHHHHHhCC------------CceE-EeCCC----------C----------CH--------------------------
Q psy16633 282 LKLYLEQFK------------ISTC-VLNSE----------L----------PA-------------------------- 302 (540)
Q Consensus 282 l~~~L~~~~------------~~~~-~l~~~----------l----------~~-------------------------- 302 (540)
++..|.+.+ ++++ ++|++ + ++
T Consensus 553 ~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~ 632 (1038)
T 2w00_A 553 YYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSN 632 (1038)
T ss_dssp HHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHH
T ss_pred HHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccch
Confidence 999997754 5554 45542 2 22
Q ss_pred ---HHHHHHHHHHhcCCccEEEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEeCCCCCCcccchhcccc
Q psy16633 303 ---KARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGR 379 (540)
Q Consensus 303 ---~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GR 379 (540)
..|..++++|++|.++|||+|+ ++.+|+|+|.+ .|+++|.|.+...|+||+||
T Consensus 633 ~~~~~R~~i~~~Fk~g~i~ILIvvd-----------------------~lltGfDiP~l-~tlylDkpl~~~~liQaIGR 688 (1038)
T 2w00_A 633 GFQNYYRDLAQRVKNQDIDLLIVVG-----------------------MFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSR 688 (1038)
T ss_dssp HHHHHHHHHHHHHHTTSSSEEEESS-----------------------TTSSSCCCTTE-EEEEEESCCCHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHcCCCeEEEEcc-----------------------hHHhCcCcccc-cEEEEccCCCccceeehhhc
Confidence 1478899999999999999999 99999999999 78899999999999999999
Q ss_pred ccCCCCC----ceEEEEecc
Q psy16633 380 TARGKNQ----GTALSFVSL 395 (540)
Q Consensus 380 agR~g~~----g~~i~~~~~ 395 (540)
++|.+.. |.++.|+..
T Consensus 689 tnR~~~~~K~~G~IVdf~~~ 708 (1038)
T 2w00_A 689 TNRIYDATKTFGNIVTFRDL 708 (1038)
T ss_dssp TCCCCCTTCCSEEEEESSCC
T ss_pred cCcCCCCCCCcEEEEEcccc
Confidence 9998753 778887764
No 72
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=8e-28 Score=270.33 Aligned_cols=313 Identities=16% Similarity=0.164 Sum_probs=217.2
Q ss_pred CChHHHHHHHHHHh----cCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHH
Q psy16633 40 EPTLIQERAIPLIL----QNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELT 115 (540)
Q Consensus 40 ~pt~~Q~~ai~~il----~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~ 115 (540)
.++|+|.+++..++ .++++|+..+||+|||+.++..+...+... .....+||+|| .+|+.||.+.+.+++
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~-----~~~~~~LIV~P-~sll~qW~~E~~~~~ 309 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFAR-----RQNGPHIIVVP-LSTMPAWLDTFEKWA 309 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHH-----SCCSCEEEECC-TTTHHHHHHHHHHHS
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhc-----CCCCCEEEEEC-chHHHHHHHHHHHHC
Confidence 68999999998766 788999999999999997655544333221 34567899999 678899999998876
Q ss_pred hhcCCCceEEEeecCcccccchh------------hhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccC
Q psy16633 116 MKCSRDVKCVDISEQVDVSVQEP------------LLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSF 183 (540)
Q Consensus 116 ~~~~~~i~~~~~~~~~~~~~~~~------------~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~ 183 (540)
. .+.+....|+........ .....++|+|+|++.+...... +.. ..+++||+||||++-..
T Consensus 310 p----~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~-~~w~~vIvDEaH~lkn~ 382 (800)
T 3mwy_W 310 P----DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGS-IKWQFMAVDEAHRLKNA 382 (800)
T ss_dssp T----TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHT-SEEEEEEETTGGGGCCS
T ss_pred C----CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--Hhc-CCcceeehhhhhhhcCc
Confidence 3 566666666544222111 1124678999999998764332 111 36789999999998654
Q ss_pred CcHHHHHHHHHhCCcccceeeEeeecc----HHHHHHHHHhc-----------------------------CCCeEEEec
Q psy16633 184 GYEDDMKAVLKFLPKLYQAILASATLS----EDVLSLKHLIL-----------------------------RNPVILKLE 230 (540)
Q Consensus 184 ~~~~~l~~i~~~l~~~~q~il~SATl~----~~~~~~~~~~l-----------------------------~~p~~i~~~ 230 (540)
+. .....+..++ ....+++|||+- .++..+..... -.|.+++..
T Consensus 383 ~s--~~~~~l~~l~-~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~ 459 (800)
T 3mwy_W 383 ES--SLYESLNSFK-VANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRL 459 (800)
T ss_dssp SS--HHHHHHTTSE-EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECC
T ss_pred hh--HHHHHHHHhh-hccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhh
Confidence 32 3344444554 345688999982 22222222211 122222221
Q ss_pred CCCCC-CCCCeEEEEEEcC-------------------------------------------------------------
Q psy16633 231 EPAIA-PVSQLAHYHILAQ------------------------------------------------------------- 248 (540)
Q Consensus 231 ~~~~~-~~~~l~~~~~~~~------------------------------------------------------------- 248 (540)
..... .........+.+.
T Consensus 460 k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~ 539 (800)
T 3mwy_W 460 KKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGD 539 (800)
T ss_dssp GGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC--
T ss_pred HHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhccc
Confidence 11100 0001111111111
Q ss_pred --------------cccHHHHHHHHHHhc-ccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHh
Q psy16633 249 --------------EDEKATILYTLLKLN-LVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFN 313 (540)
Q Consensus 249 --------------~~~k~~~l~~ll~~~-~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~ 313 (540)
...|...+..++... ..+.++||||+.+..+..|...|...|+.+..+||+++..+|..+++.|+
T Consensus 540 ~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~ 619 (800)
T 3mwy_W 540 GKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFN 619 (800)
T ss_dssp --CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTS
T ss_pred ccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhh
Confidence 122444455555432 24569999999999999999999999999999999999999999999999
Q ss_pred cCCc---cEEEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEE
Q psy16633 314 QGLY---DVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTAL 390 (540)
Q Consensus 314 ~g~~---~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i 390 (540)
.|.. .+|++|. +.+.|||++.+++||+||+|+|+..+.||+||+.|.|+...+.
T Consensus 620 ~~~~~~~v~LlSt~-----------------------agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~ 676 (800)
T 3mwy_W 620 SPDSNDFVFLLSTR-----------------------AGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVM 676 (800)
T ss_dssp STTCSCCCEEEEHH-----------------------HHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEE
T ss_pred CCCCCceEEEEecc-----------------------cccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEE
Confidence 8655 4999999 9999999999999999999999999999999999999865544
Q ss_pred E
Q psy16633 391 S 391 (540)
Q Consensus 391 ~ 391 (540)
+
T Consensus 677 V 677 (800)
T 3mwy_W 677 V 677 (800)
T ss_dssp E
T ss_pred E
Confidence 3
No 73
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.96 E-value=7.6e-27 Score=256.14 Aligned_cols=318 Identities=14% Similarity=0.155 Sum_probs=211.5
Q ss_pred CChHHHHHHHHHHh---------cCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHH
Q psy16633 40 EPTLIQERAIPLIL---------QNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKN 110 (540)
Q Consensus 40 ~pt~~Q~~ai~~il---------~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~ 110 (540)
.++|+|.+++..+. .++.+|+..+||+|||+.++..+... +...........++||++|+ +|+.||.+.
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l-~~~~~~~~p~~~~~LiV~P~-sll~qW~~E 132 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTL-LKQSPDCKPEIDKVIVVSPS-SLVRNWYNE 132 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHH-HHCCTTSSCSCSCEEEEECH-HHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHH-HHhCccccCCCCcEEEEecH-HHHHHHHHH
Confidence 68999999998874 35679999999999999766555443 33211111234579999996 889999999
Q ss_pred HHHHHhhcCCCceEEEeecCcccccch---hhhh-----CCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCcccccc
Q psy16633 111 IQELTMKCSRDVKCVDISEQVDVSVQE---PLLV-----ERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFS 182 (540)
Q Consensus 111 l~~l~~~~~~~i~~~~~~~~~~~~~~~---~~l~-----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~ 182 (540)
+.+++.. .+.+..+.++....... .... ...+|+|+|++.+..... .+.. ..+++||+||||++-+
T Consensus 133 ~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~--~l~~-~~~~~vI~DEaH~ikn 206 (644)
T 1z3i_X 133 VGKWLGG---RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE--VLHK-GKVGLVICDEGHRLKN 206 (644)
T ss_dssp HHHHHGG---GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT--TTTT-SCCCEEEETTGGGCCT
T ss_pred HHHHcCC---CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH--Hhhc-CCccEEEEECceecCC
Confidence 9998754 24445555543221111 1111 247899999999875432 2222 5789999999999876
Q ss_pred CCcHHHHHHHHHhCCcccceeeEeeeccHH----HHH---------------HHHHh-----------------------
Q psy16633 183 FGYEDDMKAVLKFLPKLYQAILASATLSED----VLS---------------LKHLI----------------------- 220 (540)
Q Consensus 183 ~~~~~~l~~i~~~l~~~~q~il~SATl~~~----~~~---------------~~~~~----------------------- 220 (540)
.. ......+ ..++ ....+++|||+-.+ +.. +...+
T Consensus 207 ~~-~~~~~al-~~l~-~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~ 283 (644)
T 1z3i_X 207 SD-NQTYLAL-NSMN-AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQK 283 (644)
T ss_dssp TC-HHHHHHH-HHHC-CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHH
T ss_pred hh-hHHHHHH-Hhcc-cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHH
Confidence 54 2222233 2333 34679999997321 000 00000
Q ss_pred ------cCCCeEEEecCCCCC-CCCCeEEEEEEcC---------------------------------------------
Q psy16633 221 ------LRNPVILKLEEPAIA-PVSQLAHYHILAQ--------------------------------------------- 248 (540)
Q Consensus 221 ------l~~p~~i~~~~~~~~-~~~~l~~~~~~~~--------------------------------------------- 248 (540)
+-.|.+++-...... .........+.+.
T Consensus 284 ~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp 363 (644)
T 1z3i_X 284 LQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHP 363 (644)
T ss_dssp HHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCH
Confidence 001111111100000 0000011111111
Q ss_pred ---------------------------------cccHHHHHHHHHHhc--ccCCcEEEEecChhhHHHHHHHHHhCCCce
Q psy16633 249 ---------------------------------EDEKATILYTLLKLN--LVQGKTIIFVNTVDKCYKLKLYLEQFKIST 293 (540)
Q Consensus 249 ---------------------------------~~~k~~~l~~ll~~~--~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~ 293 (540)
...|...+..++... ..+.++|||++++..+..+...|...|+.+
T Consensus 364 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~ 443 (644)
T 1z3i_X 364 ALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLY 443 (644)
T ss_dssp HHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCE
Confidence 122334444444332 135699999999999999999999999999
Q ss_pred EEeCCCCCHHHHHHHHHHHhcCCcc---EEEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEeCCCCCCc
Q psy16633 294 CVLNSELPAKARCHAVYQFNQGLYD---VIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDI 370 (540)
Q Consensus 294 ~~l~~~l~~~~r~~i~~~F~~g~~~---iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~ 370 (540)
..+||+++..+|..+++.|++|... +|++|+ +.++|+|++++++||+||+|+|+
T Consensus 444 ~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~-----------------------a~g~Glnl~~a~~Vi~~d~~wnp 500 (644)
T 1z3i_X 444 VRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSK-----------------------AGGCGLNLIGANRLVMFDPDWNP 500 (644)
T ss_dssp EEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGG-----------------------GSCTTCCCTTEEEEEECSCCSSH
T ss_pred EEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecc-----------------------cccCCcccccCCEEEEECCCCCc
Confidence 9999999999999999999998764 899999 89999999999999999999999
Q ss_pred ccchhccccccCCCCCceEEE
Q psy16633 371 QCYIHRAGRTARGKNQGTALS 391 (540)
Q Consensus 371 ~~yiqr~GRagR~g~~g~~i~ 391 (540)
..|.|++||++|.|+...+.+
T Consensus 501 ~~~~Qa~gR~~R~Gq~~~v~v 521 (644)
T 1z3i_X 501 ANDEQAMARVWRDGQKKTCYI 521 (644)
T ss_dssp HHHHHHHTTSSSTTCCSCEEE
T ss_pred cHHHHHHHhhhhcCCCCceEE
Confidence 999999999999998765443
No 74
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.95 E-value=1.8e-27 Score=260.95 Aligned_cols=170 Identities=19% Similarity=0.211 Sum_probs=128.2
Q ss_pred ccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcCcccHHHHHHHHHHhcccCCcEEEEecChhh
Q psy16633 199 LYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDK 278 (540)
Q Consensus 199 ~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~ll~~~~~~~k~IIF~~s~~~ 278 (540)
..|++++|||+++..... . ...+............ ...+.........++..+......+.++||||+|+..
T Consensus 380 ~~q~i~~SAT~~~~~~~~----~--~~~~~~~~r~~~l~~p--~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ 451 (664)
T 1c4o_A 380 VSQVVFVSATPGPFELAH----S--GRVVEQIIRPTGLLDP--LVRVKPTENQILDLMEGIRERAARGERTLVTVLTVRM 451 (664)
T ss_dssp CSEEEEEESSCCHHHHHH----C--SEEEEECSCTTCCCCC--EEEEECSTTHHHHHHHHHHHHHHTTCEEEEECSSHHH
T ss_pred cCCEEEEecCCCHHHHHh----h--hCeeeeeeccCCCCCC--eEEEecccchHHHHHHHHHHHHhcCCEEEEEECCHHH
Confidence 468999999998754221 1 1112211110000011 1112222233333444444333356799999999999
Q ss_pred HHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccccccccccCccccccccCCCCCc
Q psy16633 279 CYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFV 358 (540)
Q Consensus 279 ~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v 358 (540)
++.++..|.+.|+++..+||++++.+|..+++.|+.|.++|||||+ ++++|+|+|++
T Consensus 452 ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~-----------------------~l~~GlDip~v 508 (664)
T 1c4o_A 452 AEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN-----------------------LLREGLDIPEV 508 (664)
T ss_dssp HHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC-----------------------CCCTTCCCTTE
T ss_pred HHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccC-----------------------hhhcCccCCCC
Confidence 9999999999999999999999999999999999999999999999 99999999999
Q ss_pred CEEEeCCC-----CCCcccchhccccccCCCCCceEEEEeccccccc
Q psy16633 359 SNVINFDF-----PLDIQCYIHRAGRTARGKNQGTALSFVSLREQDL 400 (540)
Q Consensus 359 ~~Vi~~d~-----p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e~~~ 400 (540)
++||++|. |.|..+|+||+|||||.+ .|.+++|+++.+...
T Consensus 509 ~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~~~~ 554 (664)
T 1c4o_A 509 SLVAILDADKEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVSEAM 554 (664)
T ss_dssp EEEEETTTTSCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCCHHH
T ss_pred CEEEEeCCcccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCCHHH
Confidence 99999997 899999999999999985 899999998766543
No 75
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.95 E-value=3.3e-26 Score=247.30 Aligned_cols=130 Identities=18% Similarity=0.167 Sum_probs=111.1
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHH
Q psy16633 36 LGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELT 115 (540)
Q Consensus 36 ~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~ 115 (540)
+|+ +||++|..++|.+++|+ ++.++||+|||++|.+|++...+ .+..++|++||++||.|.++.+..++
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL--------~G~qv~VvTPTreLA~Qdae~m~~l~ 144 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNAL--------TGKGVHVVTVNDYLARRDAEWMGPVY 144 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHT--------TCSCCEEEESSHHHHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHH--------hCCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 799 99999999999999998 99999999999999999965442 35679999999999999999999999
Q ss_pred hhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHH-HHHHhcCc------CCccC---CccEEEEcCccccc
Q psy16633 116 MKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARA-LAHLKAKT------LDLKS---SLEIVIIDEADLVF 181 (540)
Q Consensus 116 ~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l-~~~l~~~~------~~~~~---~l~~lViDEah~l~ 181 (540)
..+ ++++..+.|+.+... ......++|+|+||++| ++++..+. +.+ + .+.++|+||+|.|+
T Consensus 145 ~~l--GLsv~~i~Gg~~~~~--r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~-r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 145 RGL--GLSVGVIQHASTPAE--RRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVL-RHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp HTT--TCCEEECCTTCCHHH--HHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCS-CSSSSSCEEEETTHHHHT
T ss_pred Hhc--CCeEEEEeCCCCHHH--HHHHcCCCEEEECchhhhhHHHHHhhhcchhhccc-ccCCCcceEEEechHHHH
Confidence 887 788888998876433 33334799999999999 88887763 334 6 89999999999876
No 76
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.95 E-value=8.9e-27 Score=255.37 Aligned_cols=170 Identities=18% Similarity=0.213 Sum_probs=129.4
Q ss_pred ccceeeEeeeccHHHHHHHHHhcCCCeEEEecCCCCCCCCCeEEEEEEcCcccHHHHHHHHHHhcccCCcEEEEecChhh
Q psy16633 199 LYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDK 278 (540)
Q Consensus 199 ~~q~il~SATl~~~~~~~~~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~ll~~~~~~~k~IIF~~s~~~ 278 (540)
..|++++|||+++..... ............... .. ...+.........++..+......++++||||+++..
T Consensus 386 ~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~~l~--~p--~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ 457 (661)
T 2d7d_A 386 MHNIVYVSATPGPYEIEH----TDEMVEQIIRPTGLL--DP--LIDVRPIEGQIDDLIGEIQARIERNERVLVTTLTKKM 457 (661)
T ss_dssp CSEEEEECSSCCHHHHHH----CSSCEEECCCTTCCC--CC--EEEEECSTTHHHHHHHHHHHHHTTTCEEEEECSSHHH
T ss_pred CCCEEEEecCCChhHHHh----hhCeeeeeecccCCC--CC--eEEEecccchHHHHHHHHHHHHhcCCeEEEEECCHHH
Confidence 578999999998754222 111111111111110 11 1112222233334444444433356799999999999
Q ss_pred HHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccccccccccCccccccccCCCCCc
Q psy16633 279 CYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFV 358 (540)
Q Consensus 279 ~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v 358 (540)
++.++..|.+.|+++..+||++++.+|..+++.|+.|.++|||||+ .+++|+|+|++
T Consensus 458 ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----------------------~l~~GlDip~v 514 (661)
T 2d7d_A 458 SEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----------------------LLREGLDIPEV 514 (661)
T ss_dssp HHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----------------------CCSTTCCCTTE
T ss_pred HHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----------------------hhhCCcccCCC
Confidence 9999999999999999999999999999999999999999999999 99999999999
Q ss_pred CEEEeCCC-----CCCcccchhccccccCCCCCceEEEEeccccccc
Q psy16633 359 SNVINFDF-----PLDIQCYIHRAGRTARGKNQGTALSFVSLREQDL 400 (540)
Q Consensus 359 ~~Vi~~d~-----p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e~~~ 400 (540)
++||++|. |.|..+|+||+|||||. ..|.+++|+++.+...
T Consensus 515 ~lVi~~d~d~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~~~ 560 (661)
T 2d7d_A 515 SLVAILDADKEGFLRSERSLIQTIGRAARN-AEGRVIMYADKITKSM 560 (661)
T ss_dssp EEEEETTTTCCTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSCCHHH
T ss_pred CEEEEeCcccccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCCCHHH
Confidence 99999997 99999999999999998 7899999998766543
No 77
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.95 E-value=1.6e-26 Score=209.16 Aligned_cols=151 Identities=30% Similarity=0.533 Sum_probs=140.7
Q ss_pred CCCeEEEEEEcCcccHHHHHHHHHHhcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCC
Q psy16633 237 VSQLAHYHILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGL 316 (540)
Q Consensus 237 ~~~l~~~~~~~~~~~k~~~l~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~ 316 (540)
...+.|+++.++..+|...|..+++.. ..+++||||++++.+..++..|.+.|+.+..+||+|++.+|..+++.|++|.
T Consensus 7 ~~~i~~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~ 85 (163)
T 2hjv_A 7 TRNIEHAVIQVREENKFSLLKDVLMTE-NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGE 85 (163)
T ss_dssp CCCEEEEEEECCGGGHHHHHHHHHHHH-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred cccceEEEEECChHHHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 345899999999999999999998854 4679999999999999999999999999999999999999999999999999
Q ss_pred ccEEEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEEeccc
Q psy16633 317 YDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLR 396 (540)
Q Consensus 317 ~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~ 396 (540)
.+|||||+ ++++|+|+|++++||+||+|.+..+|+||+||+||.|+.|.+++|+.+.
T Consensus 86 ~~vlv~T~-----------------------~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~ 142 (163)
T 2hjv_A 86 YRYLVATD-----------------------VAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAF 142 (163)
T ss_dssp CSEEEECG-----------------------GGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGG
T ss_pred CeEEEECC-----------------------hhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHH
Confidence 99999999 9999999999999999999999999999999999999999999999988
Q ss_pred cccccccccchhhhhhhhhHHHHHHHHHHhhc
Q psy16633 397 EQDLMNDGTALSFVSLREQDLMNDVNEYLMTN 428 (540)
Q Consensus 397 e~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 428 (540)
+... +..+++.++.+
T Consensus 143 ~~~~-----------------~~~i~~~~~~~ 157 (163)
T 2hjv_A 143 EKRF-----------------LADIEEYIGFE 157 (163)
T ss_dssp GHHH-----------------HHHHHHHHTSC
T ss_pred HHHH-----------------HHHHHHHHCCC
Confidence 8777 88888876654
No 78
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.94 E-value=8.5e-27 Score=216.29 Aligned_cols=168 Identities=24% Similarity=0.387 Sum_probs=133.6
Q ss_pred HHhcCCCeEEEecCCCCCCCCCeEEEEEEcCcccHHHHHHHHHHhcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeC
Q psy16633 218 HLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLN 297 (540)
Q Consensus 218 ~~~l~~p~~i~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~ 297 (540)
+.++.+|..+.+.... .....+.|+++.++..+|...|..++... .+++||||+++..++.++..|...|+.+..+|
T Consensus 9 ~~~~~~p~~i~v~~~~-~~~~~i~q~~~~~~~~~K~~~L~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lh 85 (191)
T 2p6n_A 9 SGVDLGTENLYFQSMG-AASLDVIQEVEYVKEEAKMVYLLECLQKT--PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIH 85 (191)
T ss_dssp --------------------CCSEEEEEECCGGGHHHHHHHHHTTS--CSCEEEECSCHHHHHHHHHHHHHHTCCEEEEC
T ss_pred ccccCCCEEEEECCCC-CCCcCceEEEEEcChHHHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEe
Confidence 4567788888876554 34467899999999999999999988753 56899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEeCCCCCCcccchhcc
Q psy16633 298 SELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRA 377 (540)
Q Consensus 298 ~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~ 377 (540)
|++++.+|..+++.|++|..+|||||+ ++++|+|+|++++||+||+|.+..+|+||+
T Consensus 86 g~~~~~~R~~~l~~F~~g~~~vLvaT~-----------------------~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~ 142 (191)
T 2p6n_A 86 GGKDQEERTKAIEAFREGKKDVLVATD-----------------------VASKGLDFPAIQHVINYDMPEEIENYVHRI 142 (191)
T ss_dssp TTSCHHHHHHHHHHHHHTSCSEEEECH-----------------------HHHTTCCCCCCSEEEESSCCSSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhcCCCEEEEEcC-----------------------chhcCCCcccCCEEEEeCCCCCHHHHHHHh
Confidence 999999999999999999999999999 999999999999999999999999999999
Q ss_pred ccccCCCCCceEEEEeccc-cccccccccchhhhhhhhhHHHHHHHHHHhhc
Q psy16633 378 GRTARGKNQGTALSFVSLR-EQDLMNDGTALSFVSLREQDLMNDVNEYLMTN 428 (540)
Q Consensus 378 GRagR~g~~g~~i~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 428 (540)
||+||.|+.|.+++|+++. +... +..+++.+...
T Consensus 143 GR~gR~g~~g~~i~l~~~~~~~~~-----------------~~~l~~~l~~~ 177 (191)
T 2p6n_A 143 GRTGCSGNTGIATTFINKACDESV-----------------LMDLKALLLEA 177 (191)
T ss_dssp TTSCC---CCEEEEEECTTSCHHH-----------------HHHHHHHHHHT
T ss_pred CccccCCCCcEEEEEEcCchhHHH-----------------HHHHHHHHHHc
Confidence 9999999999999999875 4444 66777766543
No 79
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.94 E-value=3.9e-26 Score=207.01 Aligned_cols=149 Identities=31% Similarity=0.483 Sum_probs=131.8
Q ss_pred CeEEEEEEcCccc-HHHHHHHHHHhcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCc
Q psy16633 239 QLAHYHILAQEDE-KATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLY 317 (540)
Q Consensus 239 ~l~~~~~~~~~~~-k~~~l~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~ 317 (540)
.+.|+++.++..+ |...+..+++.. ..+++||||++++.++.++..|.+.++.+..+||+|++.+|..+++.|++|..
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 81 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSS 81 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHT-TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 4778888888777 999999998864 56799999999999999999999999999999999999999999999999999
Q ss_pred cEEEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEEecccc
Q psy16633 318 DVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLRE 397 (540)
Q Consensus 318 ~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e 397 (540)
+|||||+ ++++|+|+|++++||+||+|.+..+|+||+||+||.|+.|.+++|+++.+
T Consensus 82 ~vlv~T~-----------------------~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 138 (165)
T 1fuk_A 82 RILISTD-----------------------LLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNED 138 (165)
T ss_dssp SEEEEEG-----------------------GGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTT
T ss_pred EEEEEcC-----------------------hhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchH
Confidence 9999999 99999999999999999999999999999999999999999999999888
Q ss_pred ccccccccchhhhhhhhhHHHHHHHHHHhhc
Q psy16633 398 QDLMNDGTALSFVSLREQDLMNDVNEYLMTN 428 (540)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 428 (540)
... +..+++.++..
T Consensus 139 ~~~-----------------~~~~~~~~~~~ 152 (165)
T 1fuk_A 139 VGA-----------------MRELEKFYSTQ 152 (165)
T ss_dssp HHH-----------------HHHHHHHSSCC
T ss_pred HHH-----------------HHHHHHHHccC
Confidence 766 77777775544
No 80
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.94 E-value=4.3e-26 Score=210.56 Aligned_cols=153 Identities=29% Similarity=0.452 Sum_probs=128.1
Q ss_pred CCCCeEEEEEEcCcccHHHHHHHHHHhcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcC
Q psy16633 236 PVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQG 315 (540)
Q Consensus 236 ~~~~l~~~~~~~~~~~k~~~l~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g 315 (540)
....+.|+++.++..+|...|..+++.....+++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|++|
T Consensus 16 ~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g 95 (185)
T 2jgn_A 16 TSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG 95 (185)
T ss_dssp CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHT
T ss_pred CCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcC
Confidence 34679999999999999999999998765678999999999999999999999999999999999999999999999999
Q ss_pred CccEEEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEEecc
Q psy16633 316 LYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSL 395 (540)
Q Consensus 316 ~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~ 395 (540)
..+|||||+ ++++|+|+|++++||+||+|+|..+|+||+||+||.|+.|.+++|+++
T Consensus 96 ~~~vLvaT~-----------------------~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~ 152 (185)
T 2jgn_A 96 KSPILVATA-----------------------VAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNE 152 (185)
T ss_dssp SSSEEEEEC-----------------------------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECG
T ss_pred CCeEEEEcC-----------------------hhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEch
Confidence 999999999 999999999999999999999999999999999999999999999998
Q ss_pred ccccccccccchhhhhhhhhHHHHHHHHHHhhc
Q psy16633 396 REQDLMNDGTALSFVSLREQDLMNDVNEYLMTN 428 (540)
Q Consensus 396 ~e~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 428 (540)
.+... ++.+++.+...
T Consensus 153 ~~~~~-----------------~~~l~~~l~~~ 168 (185)
T 2jgn_A 153 RNINI-----------------TKDLLDLLVEA 168 (185)
T ss_dssp GGGGG-----------------HHHHHHHHHHT
T ss_pred hhHHH-----------------HHHHHHHHHhc
Confidence 88777 77787777653
No 81
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.94 E-value=5.3e-26 Score=208.24 Aligned_cols=151 Identities=26% Similarity=0.446 Sum_probs=135.1
Q ss_pred CCCeEEEEEEcCccc-HHHHHHHHHHhcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcC
Q psy16633 237 VSQLAHYHILAQEDE-KATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQG 315 (540)
Q Consensus 237 ~~~l~~~~~~~~~~~-k~~~l~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g 315 (540)
...+.|+++.++..+ |...+..+++.. ..+++||||+++..+..++..|.+.|+.+..+||+|++.+|..+++.|++|
T Consensus 5 ~~~i~q~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g 83 (175)
T 2rb4_A 5 LNNIRQYYVLCEHRKDKYQALCNIYGSI-TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDG 83 (175)
T ss_dssp BCCEEEEEEECSSHHHHHHHHHHHHTTS-CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTT
T ss_pred cCCceEEEEEcCChHhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 457899999988655 999999988754 467999999999999999999999999999999999999999999999999
Q ss_pred CccEEEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEeCCCC------CCcccchhccccccCCCCCceE
Q psy16633 316 LYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFP------LDIQCYIHRAGRTARGKNQGTA 389 (540)
Q Consensus 316 ~~~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p------~s~~~yiqr~GRagR~g~~g~~ 389 (540)
..+|||||+ ++++|+|+|++++||+||+| .+..+|+||+||+||.|+.|.+
T Consensus 84 ~~~vLvaT~-----------------------~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~ 140 (175)
T 2rb4_A 84 KEKVLITTN-----------------------VCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLA 140 (175)
T ss_dssp SCSEEEECC-----------------------SCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEE
T ss_pred CCeEEEEec-----------------------chhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceE
Confidence 999999999 99999999999999999999 9999999999999999999999
Q ss_pred EEEeccccccccccccchhhhhhhhhHHHHHHHHHHhhc
Q psy16633 390 LSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTN 428 (540)
Q Consensus 390 i~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 428 (540)
++|+.+.+... +..+++.++..
T Consensus 141 ~~~~~~~~~~~-----------------~~~i~~~~~~~ 162 (175)
T 2rb4_A 141 FNMIEVDELPS-----------------LMKIQDHFNSS 162 (175)
T ss_dssp EEEECGGGHHH-----------------HHHHHHHHTCC
T ss_pred EEEEccchHHH-----------------HHHHHHHhcCc
Confidence 99999888766 88888887654
No 82
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.94 E-value=3.1e-26 Score=209.02 Aligned_cols=150 Identities=27% Similarity=0.491 Sum_probs=137.6
Q ss_pred CCeEEEEEEcCcccHHHHHHHHHHhcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCc
Q psy16633 238 SQLAHYHILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLY 317 (540)
Q Consensus 238 ~~l~~~~~~~~~~~k~~~l~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~ 317 (540)
..+.|+++.++..+|...+..+++.. ..+++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|++|..
T Consensus 4 ~~i~q~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~ 82 (172)
T 1t5i_A 4 HGLQQYYVKLKDNEKNRKLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQR 82 (172)
T ss_dssp -CCEEEEEECCGGGHHHHHHHHHHHS-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CCeEEEEEECChHHHHHHHHHHHHhC-CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCC
Confidence 46889999999999999999999854 46799999999999999999999999999999999999999999999999999
Q ss_pred cEEEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEEecccc
Q psy16633 318 DVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLRE 397 (540)
Q Consensus 318 ~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e 397 (540)
+|||||+ ++++|+|+|++++||+||+|.|..+|+||+||+||.|+.|.+++|+++.+
T Consensus 83 ~vLvaT~-----------------------~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~ 139 (172)
T 1t5i_A 83 RILVATN-----------------------LFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 139 (172)
T ss_dssp SEEEESS-----------------------CCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHH
T ss_pred cEEEECC-----------------------chhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChh
Confidence 9999999 99999999999999999999999999999999999999999999998753
Q ss_pred -ccccccccchhhhhhhhhHHHHHHHHHHhhc
Q psy16633 398 -QDLMNDGTALSFVSLREQDLMNDVNEYLMTN 428 (540)
Q Consensus 398 -~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 428 (540)
... ++.+++.+...
T Consensus 140 ~~~~-----------------~~~l~~~~~~~ 154 (172)
T 1t5i_A 140 DAKI-----------------LNDVQDRFEVN 154 (172)
T ss_dssp HHHH-----------------HHHHHHHHCCC
T ss_pred HHHH-----------------HHHHHHHHhcc
Confidence 344 77788776654
No 83
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.93 E-value=3e-25 Score=209.61 Aligned_cols=148 Identities=22% Similarity=0.332 Sum_probs=134.3
Q ss_pred eEEEEEEcCcccHHHHHHHHHHhcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccE
Q psy16633 240 LAHYHILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDV 319 (540)
Q Consensus 240 l~~~~~~~~~~~k~~~l~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~i 319 (540)
+.+..+.+....|...+..+++.. ..+++||||+++..++.++..|.+.|+.+..+||+|++.+|..+++.|++|..+|
T Consensus 6 ~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~v 84 (212)
T 3eaq_A 6 YEEEAVPAPVRGRLEVLSDLLYVA-SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRV 84 (212)
T ss_dssp BCCEEEECCTTSHHHHHHHHHHHH-CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCE
T ss_pred eeeeEEeCCHHHHHHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeE
Confidence 456777888899999999999854 4679999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEEecccccc
Q psy16633 320 IIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQD 399 (540)
Q Consensus 320 LIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e~~ 399 (540)
||||+ ++++|+|+|++++||+||+|.|..+|+||+|||||.|+.|.+++|+++.+..
T Consensus 85 lvaT~-----------------------~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~ 141 (212)
T 3eaq_A 85 LVATD-----------------------VAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERR 141 (212)
T ss_dssp EEECT-----------------------TTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHH
T ss_pred EEecC-----------------------hhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHH
Confidence 99999 9999999999999999999999999999999999999999999999988876
Q ss_pred ccccccchhhhhhhhhHHHHHHHHHHhhc
Q psy16633 400 LMNDGTALSFVSLREQDLMNDVNEYLMTN 428 (540)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 428 (540)
. ++.+++.++..
T Consensus 142 ~-----------------~~~i~~~~~~~ 153 (212)
T 3eaq_A 142 D-----------------VEALERAVGRR 153 (212)
T ss_dssp H-----------------HHHHHHHHSSC
T ss_pred H-----------------HHHHHHHhcCc
Confidence 6 67777776554
No 84
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.92 E-value=7.3e-25 Score=216.85 Aligned_cols=137 Identities=23% Similarity=0.348 Sum_probs=125.6
Q ss_pred eEEEEEEcCcccHHHHHHHHHHhcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccE
Q psy16633 240 LAHYHILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDV 319 (540)
Q Consensus 240 l~~~~~~~~~~~k~~~l~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~i 319 (540)
+.++++.+...+|...+..+++... .+++||||++++.++.++..|.+.|+.+..+||+|++.+|..+++.|++|..+|
T Consensus 3 v~~~~i~~~~~~K~~~L~~ll~~~~-~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~v 81 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEVLSDLLYVAS-PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRV 81 (300)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHC-CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCE
T ss_pred eEEEEEECCHHHHHHHHHHHHHhcC-CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceE
Confidence 6788999999999999999998654 789999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEEecccccc
Q psy16633 320 IIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQD 399 (540)
Q Consensus 320 LIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e~~ 399 (540)
||||+ ++++|+|+|++++||+||+|.|..+|+||+|||||.|+.|.|++|+++.+..
T Consensus 82 LVaT~-----------------------va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~ 138 (300)
T 3i32_A 82 LVATD-----------------------VAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERR 138 (300)
T ss_dssp EEECS-----------------------TTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHH
T ss_pred EEEec-----------------------hhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHH
Confidence 99999 9999999999999999999999999999999999999999999999988765
Q ss_pred c
Q psy16633 400 L 400 (540)
Q Consensus 400 ~ 400 (540)
.
T Consensus 139 ~ 139 (300)
T 3i32_A 139 D 139 (300)
T ss_dssp H
T ss_pred H
Confidence 5
No 85
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.84 E-value=6.5e-26 Score=206.59 Aligned_cols=138 Identities=33% Similarity=0.561 Sum_probs=128.0
Q ss_pred CeEEEEEEcCc-ccHHHHHHHHHHhcccCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCc
Q psy16633 239 QLAHYHILAQE-DEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLY 317 (540)
Q Consensus 239 ~l~~~~~~~~~-~~k~~~l~~ll~~~~~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~ 317 (540)
.+.|+++.++. ..|...+..+++.. ..+++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|++|..
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~ 81 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQP-EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 81 (170)
Confidence 36677777777 88999888888753 45799999999999999999999999999999999999999999999999999
Q ss_pred cEEEeCCCCccCCcccccccccccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceEEEEecccc
Q psy16633 318 DVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLRE 397 (540)
Q Consensus 318 ~iLIaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~i~~~~~~e 397 (540)
+|||||+ ++++|+|+|++++||+||+|.|..+|+||+||+||.|+.|.+++++.+.+
T Consensus 82 ~vLvaT~-----------------------~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~ 138 (170)
T 2yjt_D 82 NVLVATD-----------------------VAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHD 138 (170)
Confidence 9999999 99999999999999999999999999999999999999999999999887
Q ss_pred ccc
Q psy16633 398 QDL 400 (540)
Q Consensus 398 ~~~ 400 (540)
...
T Consensus 139 ~~~ 141 (170)
T 2yjt_D 139 HLL 141 (170)
Confidence 766
No 86
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.90 E-value=1.5e-23 Score=198.08 Aligned_cols=166 Identities=22% Similarity=0.211 Sum_probs=120.8
Q ss_pred CCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHH-HHHHHHHHH
Q psy16633 37 GWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQ-LHKNIQELT 115 (540)
Q Consensus 37 g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q-~~~~l~~l~ 115 (540)
+...|+++|.++++.+++++++++.+|||+|||+++++++++.+..... ...+.++||++|+++|+.| +.+.+..+.
T Consensus 30 ~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~--~~~~~~~lil~p~~~L~~q~~~~~~~~~~ 107 (216)
T 3b6e_A 30 PELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKK--ASEPGKVIVLVNKVLLVEQLFRKEFQPFL 107 (216)
T ss_dssp CCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHH--TTCCCCEEEEESSHHHHHHHHHHTHHHHH
T ss_pred CCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhccc--ccCCCcEEEEECHHHHHHHHHHHHHHHHh
Confidence 4458999999999999999999999999999999999999887755321 1346789999999999999 777888776
Q ss_pred hhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCc------CCccCCccEEEEcCccccccCCcHHHH
Q psy16633 116 MKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKT------LDLKSSLEIVIIDEADLVFSFGYEDDM 189 (540)
Q Consensus 116 ~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~------~~~~~~l~~lViDEah~l~~~~~~~~l 189 (540)
.. .+.+..+.|+.........+...++|+|+||+++.+.+.... ..+ ..+++||+||||++.+.++...+
T Consensus 108 ~~---~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~-~~~~~iIiDEah~~~~~~~~~~~ 183 (216)
T 3b6e_A 108 KK---WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQL-SDFSLIIIDECHHTNKEAVYNNI 183 (216)
T ss_dssp TT---TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCG-GGCSEEEETTC-------CHHHH
T ss_pred cc---CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccch-hcccEEEEECchhhccCCcHHHH
Confidence 43 567777777766655554555678999999999999887753 334 78999999999999877655444
Q ss_pred H-HHHHhC-------------CcccceeeEeee
Q psy16633 190 K-AVLKFL-------------PKLYQAILASAT 208 (540)
Q Consensus 190 ~-~i~~~l-------------~~~~q~il~SAT 208 (540)
. .++... .+..++++||||
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 184 MRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 3 332221 145789999998
No 87
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.88 E-value=9.3e-23 Score=195.80 Aligned_cols=170 Identities=19% Similarity=0.241 Sum_probs=126.1
Q ss_pred CChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcC
Q psy16633 40 EPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCS 119 (540)
Q Consensus 40 ~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~ 119 (540)
.++++|.++++.+.+|+++++.||||||||.++.+++++.+..... ..+.++++++|+++|+.|+.+.+.......
T Consensus 61 p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~---~~~~~~l~~~p~~~la~q~~~~~~~~~~~~- 136 (235)
T 3llm_A 61 PVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR---AAECNIVVTQPRRISAVSVAERVAFERGEE- 136 (235)
T ss_dssp GGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC---GGGCEEEEEESSHHHHHHHHHHHHHTTTCC-
T ss_pred ChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC---CCceEEEEeccchHHHHHHHHHHHHHhccc-
Confidence 5689999999999999999999999999999999999887765321 235689999999999999988887654321
Q ss_pred CCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCcccc-ccCCcH-HHHHHHHHhCC
Q psy16633 120 RDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLV-FSFGYE-DDMKAVLKFLP 197 (540)
Q Consensus 120 ~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l-~~~~~~-~~l~~i~~~l~ 197 (540)
....+.... ..........++|+|+||+++++++... + .++++||+||||.+ ++.++. ..+..+....+
T Consensus 137 ~~~~~g~~~-----~~~~~~~~~~~~Ivv~Tpg~l~~~l~~~---l-~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~ 207 (235)
T 3llm_A 137 PGKSCGYSV-----RFESILPRPHASIMFCTVGVLLRKLEAG---I-RGISHVIVDEIHERDINTDFLLVVLRDVVQAYP 207 (235)
T ss_dssp TTSSEEEEE-----TTEEECCCSSSEEEEEEHHHHHHHHHHC---C-TTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCT
T ss_pred cCceEEEee-----chhhccCCCCCeEEEECHHHHHHHHHhh---h-cCCcEEEEECCccCCcchHHHHHHHHHHHhhCC
Confidence 112222111 1111111246789999999999998763 3 88999999999975 555555 46666666665
Q ss_pred cccceeeEeeeccHHHHHHHHHhcCCCe
Q psy16633 198 KLYQAILASATLSEDVLSLKHLILRNPV 225 (540)
Q Consensus 198 ~~~q~il~SATl~~~~~~~~~~~l~~p~ 225 (540)
..|+++||||++.+. +...+...|+
T Consensus 208 -~~~~il~SAT~~~~~--~~~~~~~~pv 232 (235)
T 3llm_A 208 -EVRIVLMSATIDTSM--FCEYFFNCPI 232 (235)
T ss_dssp -TSEEEEEECSSCCHH--HHHHTTSCCC
T ss_pred -CCeEEEEecCCCHHH--HHHHcCCCCE
Confidence 679999999999876 5555555554
No 88
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.88 E-value=1.3e-21 Score=210.34 Aligned_cols=128 Identities=19% Similarity=0.194 Sum_probs=87.0
Q ss_pred CCCCCChHHHHHHHHH----HhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHH
Q psy16633 36 LGWLEPTLIQERAIPL----ILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNI 111 (540)
Q Consensus 36 ~g~~~pt~~Q~~ai~~----il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l 111 (540)
.|| .|+++|.+++.. +..|+++++.||||+|||++|++|++.. +.+++|++||++|+.|+.+.+
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~-----------~~~~~~~~~t~~l~~q~~~~~ 71 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL-----------KKKVLIFTRTHSQLDSIYKNA 71 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH-----------TCEEEEEESCHHHHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC-----------CCcEEEEcCCHHHHHHHHHHH
Confidence 478 899999998654 4578999999999999999999998643 578999999999999999887
Q ss_pred HHHHhhcCCCceEEEeecCccc--------c-------------------------c--------------chhhhhCCC
Q psy16633 112 QELTMKCSRDVKCVDISEQVDV--------S-------------------------V--------------QEPLLVERP 144 (540)
Q Consensus 112 ~~l~~~~~~~i~~~~~~~~~~~--------~-------------------------~--------------~~~~l~~~~ 144 (540)
..+. +++..+.|.... . . ..+.....+
T Consensus 72 ~~l~------~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~a 145 (540)
T 2vl7_A 72 KLLG------LKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDK 145 (540)
T ss_dssp GGGT------CCEEEC---------------------------------------------------------CTTGGGC
T ss_pred HhcC------CcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcC
Confidence 7642 222222221100 0 0 001123467
Q ss_pred CEEEEChHHHHHHHhcCcCC------ccCCccEEEEcCccccc
Q psy16633 145 DIVVATPARALAHLKAKTLD------LKSSLEIVIIDEADLVF 181 (540)
Q Consensus 145 ~Ivv~Tp~~l~~~l~~~~~~------~~~~l~~lViDEah~l~ 181 (540)
+|||+|+..+++....+.+. +.....++||||||.+.
T Consensus 146 diVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 146 DVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp SEEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred CEEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 99999999998865433221 22567899999999884
No 89
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.86 E-value=5.8e-20 Score=198.07 Aligned_cols=132 Identities=16% Similarity=0.106 Sum_probs=101.0
Q ss_pred CCCCChHHHHHHHHHH----hcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHH
Q psy16633 37 GWLEPTLIQERAIPLI----LQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQ 112 (540)
Q Consensus 37 g~~~pt~~Q~~ai~~i----l~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~ 112 (540)
|| .|+|.|.+++..+ ..|+++++.||||+|||++|++|++. .+.+++|++||++|+.|+.+.+.
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~-----------~~~~v~i~~pt~~l~~q~~~~~~ 68 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE-----------VKPKVLFVVRTHNEFYPIYRDLT 68 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH-----------HCSEEEEEESSGGGHHHHHHHHT
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh-----------CCCeEEEEcCCHHHHHHHHHHHH
Confidence 56 7999999977654 46899999999999999999999986 25789999999999999999888
Q ss_pred HHHhhcCCCceEEEeecCccccc---------------------------------ch------------------hhhh
Q psy16633 113 ELTMKCSRDVKCVDISEQVDVSV---------------------------------QE------------------PLLV 141 (540)
Q Consensus 113 ~l~~~~~~~i~~~~~~~~~~~~~---------------------------------~~------------------~~l~ 141 (540)
.+.... .+++..+.|..+.-. .. ....
T Consensus 69 ~l~~~~--~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~ 146 (551)
T 3crv_A 69 KIREKR--NITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSL 146 (551)
T ss_dssp TCCCSS--CCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHG
T ss_pred HHhhhc--CccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhh
Confidence 876544 566666666432100 00 1123
Q ss_pred CCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCcccccc
Q psy16633 142 ERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFS 182 (540)
Q Consensus 142 ~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~ 182 (540)
..++|||+|+..|++...+..+.+.....++||||||.+.+
T Consensus 147 ~~adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 147 YKADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp GGCSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred hcCCEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 46899999999999886554443335678999999998765
No 90
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.85 E-value=1.8e-21 Score=192.20 Aligned_cols=155 Identities=17% Similarity=0.175 Sum_probs=121.6
Q ss_pred CChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcC
Q psy16633 40 EPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCS 119 (540)
Q Consensus 40 ~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~ 119 (540)
.|+++|.++++.++++++.++++|||+|||.+++.++...+.. ...++||++||++|+.|+.+.+.+++...
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~-------~~~~~lil~Pt~~L~~q~~~~l~~~~~~~- 184 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN-------YEGKILIIVPTTALTTQMADDFVDYRLFS- 184 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH-------CSSEEEEECSSHHHHHHHHHHHHHHTSCC-
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc-------CCCeEEEEECCHHHHHHHHHHHHHhcccc-
Confidence 7999999999999998899999999999999998887765532 34589999999999999999999885432
Q ss_pred CCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCCcHHHHHHHHHhCCcc
Q psy16633 120 RDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199 (540)
Q Consensus 120 ~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~ 199 (540)
...+..+.++..... ......+|+|+||+.+... ... ....+++||+||||++.+ ..+..++..++..
T Consensus 185 -~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~---~~~-~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~~ 252 (282)
T 1rif_A 185 -HAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQ---PKE-WFSQFGMMMNDECHLATG----KSISSIISGLNNC 252 (282)
T ss_dssp -GGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTS---CGG-GGGGEEEEEEETGGGCCH----HHHHHHTTTCTTC
T ss_pred -cceEEEEeCCCcchh---hhccCCcEEEEchHHHHhh---HHH-HHhhCCEEEEECCccCCc----ccHHHHHHHhhcC
Confidence 456666666654322 2225689999999987543 122 237899999999998874 4677788888778
Q ss_pred cceeeEeeeccHHHH
Q psy16633 200 YQAILASATLSEDVL 214 (540)
Q Consensus 200 ~q~il~SATl~~~~~ 214 (540)
.+++++|||+++...
T Consensus 253 ~~~l~lSATp~~~~~ 267 (282)
T 1rif_A 253 MFKFGLSGSLRDGKA 267 (282)
T ss_dssp CEEEEECSSCCTTST
T ss_pred CeEEEEeCCCCCcch
Confidence 999999999986543
No 91
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.79 E-value=1.6e-18 Score=166.19 Aligned_cols=137 Identities=20% Similarity=0.215 Sum_probs=109.1
Q ss_pred CChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcC
Q psy16633 40 EPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCS 119 (540)
Q Consensus 40 ~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~ 119 (540)
.|+++|.++++.+++++++++++|||+|||.+++.++.. .+.+++|++|+++|+.|+.+.+..+
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~-----------~~~~~liv~P~~~L~~q~~~~~~~~----- 156 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINE-----------LSTPTLIVVPTLALAEQWKERLGIF----- 156 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHH-----------SCSCEEEEESSHHHHHHHHHHHGGG-----
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHH-----------cCCCEEEEeCCHHHHHHHHHHHHhC-----
Confidence 689999999999999999999999999999988777553 2567999999999999999988873
Q ss_pred CCce-EEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCCcHHHHHHHHHhCCc
Q psy16633 120 RDVK-CVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPK 198 (540)
Q Consensus 120 ~~i~-~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~ 198 (540)
++. +..+.|+.. ...+|+|+|++.+...... +...+++|||||||++.+..+. .+...++
T Consensus 157 -~~~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~----~~~~~~llIiDEaH~l~~~~~~----~i~~~~~- 217 (237)
T 2fz4_A 157 -GEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEK----LGNRFMLLIFDEVHHLPAESYV----QIAQMSI- 217 (237)
T ss_dssp -CGGGEEEESSSCB---------CCCSEEEEEHHHHHHTHHH----HTTTCSEEEEECSSCCCTTTHH----HHHHTCC-
T ss_pred -CCCeEEEEeCCCC---------CcCCEEEEeHHHHHhhHHH----hcccCCEEEEECCccCCChHHH----HHHHhcc-
Confidence 345 566666543 3568999999998766542 1256899999999999877654 4555555
Q ss_pred ccceeeEeeeccH
Q psy16633 199 LYQAILASATLSE 211 (540)
Q Consensus 199 ~~q~il~SATl~~ 211 (540)
..+++++|||+..
T Consensus 218 ~~~~l~LSATp~r 230 (237)
T 2fz4_A 218 APFRLGLTATFER 230 (237)
T ss_dssp CSEEEEEEESCC-
T ss_pred CCEEEEEecCCCC
Confidence 4678999999875
No 92
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.75 E-value=4.4e-17 Score=177.12 Aligned_cols=81 Identities=22% Similarity=0.241 Sum_probs=65.6
Q ss_pred CChHHHHHHHH----HHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHH
Q psy16633 40 EPTLIQERAIP----LILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELT 115 (540)
Q Consensus 40 ~pt~~Q~~ai~----~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~ 115 (540)
+|++.|.+.+. .+.+|+++++.||||+|||++|++|++..+.. .+.+++|++||++|+.|+.+.+..+.
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~-------~~~kvli~t~T~~l~~Qi~~el~~l~ 75 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE-------RKLKVLYLVRTNSQEEQVIKELRSLS 75 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH-------HTCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh-------cCCeEEEECCCHHHHHHHHHHHHHHh
Confidence 68999999885 44579999999999999999999999998754 35799999999999999999999887
Q ss_pred hhcCCCceEEEeec
Q psy16633 116 MKCSRDVKCVDISE 129 (540)
Q Consensus 116 ~~~~~~i~~~~~~~ 129 (540)
... .+++..+.|
T Consensus 76 ~~~--~~~~~~l~g 87 (620)
T 4a15_A 76 STM--KIRAIPMQG 87 (620)
T ss_dssp HHS--CCCEEECCC
T ss_pred hcc--CeEEEEEEC
Confidence 654 455444443
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.72 E-value=4.1e-17 Score=159.21 Aligned_cols=126 Identities=17% Similarity=0.196 Sum_probs=97.2
Q ss_pred cCcccHHHHHHHHHHhc-ccCCcEEEEecChhhHHHHHHHHHh-CCCceEEeCCCCCHHHHHHHHHHHhcC-Ccc-EEEe
Q psy16633 247 AQEDEKATILYTLLKLN-LVQGKTIIFVNTVDKCYKLKLYLEQ-FKISTCVLNSELPAKARCHAVYQFNQG-LYD-VIIA 322 (540)
Q Consensus 247 ~~~~~k~~~l~~ll~~~-~~~~k~IIF~~s~~~~~~l~~~L~~-~~~~~~~l~~~l~~~~r~~i~~~F~~g-~~~-iLIa 322 (540)
.....|...+..++... ..+.++||||+++..+..+...|.+ .|+.+..+||++++.+|..+++.|++| .++ +|++
T Consensus 92 ~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~s 171 (271)
T 1z5z_A 92 VRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLS 171 (271)
T ss_dssp STTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred cccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEe
Confidence 34567888888887653 2467999999999999999999988 499999999999999999999999999 777 7889
Q ss_pred CCCCccCCcccccccccccccCccccccccCCCCCcCEEEeCCCCCCcccchhccccccCCCCCceE--EEEecc
Q psy16633 323 SDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA--LSFVSL 395 (540)
Q Consensus 323 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~v~~Vi~~d~p~s~~~yiqr~GRagR~g~~g~~--i~~~~~ 395 (540)
|+ +.++|+|++++++||+||+|+++..|.||+||++|.|+.+.+ +.+++.
T Consensus 172 t~-----------------------~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~ 223 (271)
T 1z5z_A 172 VK-----------------------AGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISV 223 (271)
T ss_dssp CC-----------------------TTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEET
T ss_pred hh-----------------------hhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeC
Confidence 99 899999999999999999999999999999999999987765 444443
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.92 E-value=3.6e-09 Score=114.75 Aligned_cols=145 Identities=15% Similarity=0.232 Sum_probs=91.9
Q ss_pred hHHHHHHHHHHhcCCcEEEEcCCCchHH--HHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcC
Q psy16633 42 TLIQERAIPLILQNKDVLVRARTGSGKT--GAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCS 119 (540)
Q Consensus 42 t~~Q~~ai~~il~gkd~li~a~TGsGKT--~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~ 119 (540)
++.|+.|++.++.++.+++.|++||||| ++++++++..+. ...+.++++++||..++.++.+.+...+...+
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~------~~~~~~vll~APTg~AA~~L~e~~~~~~~~l~ 224 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMA------DGERCRIRLAAPTGKAAARLTESLGKALRQLP 224 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTC------SSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSS
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhh------hcCCCeEEEEeCChhHHHHHHHHHHHHHhcCC
Confidence 7899999999999999999999999999 556666665431 13467899999999999999988887766542
Q ss_pred CCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCCcHHHHHHHHHhCCcc
Q psy16633 120 RDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199 (540)
Q Consensus 120 ~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~ 199 (540)
..... . ... ......+ ..++-.+|+.. .+....... ..+++||||||+ |++ ...+..++..++..
T Consensus 225 l~~~~--~-~~~--~~~~~Ti---h~ll~~~~~~~--~~~~~~~~~-l~~d~lIIDEAs-ml~---~~~~~~Ll~~l~~~ 289 (608)
T 1w36_D 225 LTDEQ--K-KRI--PEDASTL---HRLLGAQPGSQ--RLRHHAGNP-LHLDVLVVDEAS-MID---LPMMSRLIDALPDH 289 (608)
T ss_dssp CCSCC--C-CSC--SCCCBTT---TSCC-------------CTTSC-CSCSEEEECSGG-GCB---HHHHHHHHHTCCTT
T ss_pred CCHHH--H-hcc--chhhhhh---HhhhccCCCch--HHHhccCCC-CCCCEEEEechh-hCC---HHHHHHHHHhCCCC
Confidence 11100 0 000 0000000 11222233321 111222222 368999999999 555 45778889999988
Q ss_pred cceeeEee
Q psy16633 200 YQAILASA 207 (540)
Q Consensus 200 ~q~il~SA 207 (540)
.|++++.=
T Consensus 290 ~~liLvGD 297 (608)
T 1w36_D 290 ARVIFLGD 297 (608)
T ss_dssp CEEEEEEC
T ss_pred CEEEEEcc
Confidence 88888753
No 95
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.15 E-value=3.6e-06 Score=92.08 Aligned_cols=67 Identities=22% Similarity=0.327 Sum_probs=53.7
Q ss_pred CChHHHHHHHHHHhcCCc-EEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHH
Q psy16633 40 EPTLIQERAIPLILQNKD-VLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQEL 114 (540)
Q Consensus 40 ~pt~~Q~~ai~~il~gkd-~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l 114 (540)
.+.+-|.+|+..++..++ .+|.||+|||||.+.+ -++..++. .+.++|+++||..-+.++.+.+...
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~-~~I~~l~~-------~~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVV-EIILQAVK-------QGLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHH-HHHHHHHH-------TTCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHH-HHHHHHHh-------CCCeEEEEcCchHHHHHHHHHHHhc
Confidence 467899999999988775 7999999999998644 34444443 4678999999999999988887654
No 96
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.07 E-value=2.2e-05 Score=85.30 Aligned_cols=69 Identities=23% Similarity=0.282 Sum_probs=55.6
Q ss_pred CCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHH
Q psy16633 39 LEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQEL 114 (540)
Q Consensus 39 ~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l 114 (540)
..+++.|.+|+..++.+.-++|.||+|+|||.+. ..++..+.. ..+.++++++||...+.++.+.+...
T Consensus 179 ~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~-~~~i~~l~~------~~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTS-ATIVYHLAR------QGNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp CCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHH-HHHHHHHHT------SSSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHH-HHHHHHHHH------cCCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 4578999999999998778999999999999853 344444433 25779999999999999988887654
No 97
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.01 E-value=2.6e-05 Score=81.61 Aligned_cols=71 Identities=21% Similarity=0.301 Sum_probs=51.8
Q ss_pred HHCCCCCChHHHHHHHHHHhcC----C-cEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHH
Q psy16633 34 AKLGWLEPTLIQERAIPLILQN----K-DVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLH 108 (540)
Q Consensus 34 ~~~g~~~pt~~Q~~ai~~il~g----k-d~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~ 108 (540)
.-+.|..+++-|++|+..++.. + .+++.|+.|||||.+ +..++..+.. .....+++++||...+..+.
T Consensus 19 ~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~l-l~~~~~~l~~------~~~~~il~~a~T~~Aa~~l~ 91 (459)
T 3upu_A 19 SHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTL-TKFIIEALIS------TGETGIILAAPTHAAKKILS 91 (459)
T ss_dssp --CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHH-HHHHHHHHHH------TTCCCEEEEESSHHHHHHHH
T ss_pred CCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHH-HHHHHHHHHh------cCCceEEEecCcHHHHHHHH
Confidence 3457889999999999877543 3 899999999999964 4455555544 12247999999998877665
Q ss_pred HHH
Q psy16633 109 KNI 111 (540)
Q Consensus 109 ~~l 111 (540)
+.+
T Consensus 92 ~~~ 94 (459)
T 3upu_A 92 KLS 94 (459)
T ss_dssp HHH
T ss_pred hhh
Confidence 543
No 98
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.00 E-value=2.7e-05 Score=83.49 Aligned_cols=124 Identities=15% Similarity=0.213 Sum_probs=78.6
Q ss_pred CChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcC
Q psy16633 40 EPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCS 119 (540)
Q Consensus 40 ~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~ 119 (540)
.+++.|++|+..++.++.+++.|+.|+|||.+ +..++..+.. .+.++++++||...+..+.+.+.
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~-i~~l~~~l~~-------~g~~Vl~~ApT~~Aa~~L~e~~~------- 253 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTT-TKAVADLAES-------LGLEVGLCAPTGKAARRLGEVTG------- 253 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHH-HHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHHT-------
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHH-HHHHHHHHHh-------cCCeEEEecCcHHHHHHhHhhhc-------
Confidence 57899999999999999999999999999974 3344444322 56889999999988876655321
Q ss_pred CCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCCcHHHHHHHHHhCCcc
Q psy16633 120 RDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199 (540)
Q Consensus 120 ~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~ 199 (540)
.....+. ..+...+. .+....... ...++|||||++.+. ...+..++..++..
T Consensus 254 --~~a~Tih---------~ll~~~~~-----------~~~~~~~~~-~~~dvlIIDEasml~----~~~~~~Ll~~~~~~ 306 (574)
T 3e1s_A 254 --RTASTVH---------RLLGYGPQ-----------GFRHNHLEP-APYDLLIVDEVSMMG----DALMLSLLAAVPPG 306 (574)
T ss_dssp --SCEEEHH---------HHTTEETT-----------EESCSSSSC-CSCSEEEECCGGGCC----HHHHHHHHTTSCTT
T ss_pred --ccHHHHH---------HHHcCCcc-----------hhhhhhccc-ccCCEEEEcCccCCC----HHHHHHHHHhCcCC
Confidence 1111110 00000000 000111112 467899999999553 34666777778776
Q ss_pred cceeeE
Q psy16633 200 YQAILA 205 (540)
Q Consensus 200 ~q~il~ 205 (540)
.+++++
T Consensus 307 ~~lilv 312 (574)
T 3e1s_A 307 ARVLLV 312 (574)
T ss_dssp CEEEEE
T ss_pred CEEEEE
Confidence 666665
No 99
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.97 E-value=4.8e-05 Score=84.69 Aligned_cols=69 Identities=22% Similarity=0.363 Sum_probs=55.6
Q ss_pred CCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHH
Q psy16633 39 LEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQEL 114 (540)
Q Consensus 39 ~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l 114 (540)
..+++.|.+|+..++.+.-++|.||+|||||.+. ..++..+... .+.++|+++||...+.++.+.+...
T Consensus 359 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i-~~~i~~l~~~------~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTS-ATIVYHLSKI------HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHH-HHHHHHHHHH------HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHH-HHHHHHHHhC------CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 4568999999999988777999999999999864 3444444331 4678999999999999999888765
No 100
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.92 E-value=7.7e-05 Score=82.97 Aligned_cols=69 Identities=23% Similarity=0.301 Sum_probs=55.5
Q ss_pred CCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHH
Q psy16633 39 LEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQEL 114 (540)
Q Consensus 39 ~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l 114 (540)
..+++.|.+|+..++.+.-.+|.||+|+|||.+ +..++..+.. ..+.++++++||...+.++.+.+...
T Consensus 355 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~t-i~~~i~~l~~------~~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT-SATIVYHLAR------QGNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp CCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHH-HHHHHHHHHT------TCSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHH-HHHHHHHHHH------cCCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 356899999999999887899999999999985 3445555543 25679999999999999988877654
No 101
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.87 E-value=0.001 Score=72.53 Aligned_cols=72 Identities=17% Similarity=0.223 Sum_probs=54.9
Q ss_pred CCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHh
Q psy16633 39 LEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTM 116 (540)
Q Consensus 39 ~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~ 116 (540)
..+++-|.+|+. ..+..++|.|+.|||||.+.+--+. .++... ...+.++|++++|+..+.++.+.+..+..
T Consensus 8 ~~Ln~~Q~~av~--~~~~~~lV~a~aGsGKT~~l~~ri~-~l~~~~---~~~~~~iL~ltft~~aa~e~~~rl~~~~~ 79 (647)
T 3lfu_A 8 DSLNDKQREAVA--APRSNLLVLAGAGSGKTRVLVHRIA-WLMSVE---NCSPYSIMAVTFTNKAAAEMRHRIGQLMG 79 (647)
T ss_dssp TTCCHHHHHHHT--CCSSCEEEEECTTSCHHHHHHHHHH-HHHHTS---CCCGGGEEEEESSHHHHHHHHHHHHHHHC
T ss_pred hcCCHHHHHHHh--CCCCCEEEEECCCCCHHHHHHHHHH-HHHHhC---CCChhhEEEEeccHHHHHHHHHHHHHHhc
Confidence 468999999997 2356799999999999986444333 344321 13457899999999999999999888754
No 102
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.48 E-value=0.0016 Score=65.85 Aligned_cols=74 Identities=9% Similarity=0.080 Sum_probs=58.2
Q ss_pred CChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcC
Q psy16633 40 EPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCS 119 (540)
Q Consensus 40 ~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~ 119 (540)
.++|+|...+..+...+-+++..+-+.|||.+....++..++. ..+..++++.|++..|..+.+.+..+....+
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~------~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P 236 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF------NKDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS------SSSCEEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHh------CCCCeEEEEeCCHHHHHHHHHHHHHHHHhCh
Confidence 6899999999876545668999999999998766555543332 3567899999999999988888888776553
No 103
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.20 E-value=0.0062 Score=65.55 Aligned_cols=147 Identities=12% Similarity=0.146 Sum_probs=87.9
Q ss_pred CChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcC
Q psy16633 40 EPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCS 119 (540)
Q Consensus 40 ~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~ 119 (540)
.|+|+|...+..+-..+-+++..+-|+|||.+....++-.+.. .++..++++.|++..|..+.+.++.+....+
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~------~~~~~i~~va~t~~qA~~~~~~i~~~i~~~p 236 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF------NKDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHT------SSSCEEEEEESSHHHHHHHHHHHHHHHTTSC
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHh------CCCCeEEEEECCHHHHHHHHHHHHHHHHhCh
Confidence 5799999999877556779999999999998765544444433 3466899999999999999988888776553
Q ss_pred CCceEEEe-ecCcccccchhhhhCCCCEEEEC--hHHHHHHHhcCcCCccCCccEEEEcCccccccCCcHHHHHHHHHhC
Q psy16633 120 RDVKCVDI-SEQVDVSVQEPLLVERPDIVVAT--PARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFL 196 (540)
Q Consensus 120 ~~i~~~~~-~~~~~~~~~~~~l~~~~~Ivv~T--p~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~l 196 (540)
..+..... .+.... .+..+..|.+.+ |+.+ +. .+.+++|+||+|.+-+. .+.+..+...+
T Consensus 237 ~~~~~~~~~~~~~~i-----~~~nGs~i~~~s~~~~~l----rG------~~~~~~iiDE~~~~~~~--~~l~~~~~~~l 299 (592)
T 3cpe_A 237 DFLQPGIVEWNKGSI-----ELDNGSSIGAYASSPDAV----RG------NSFAMIYIEDCAFIPNF--HDSWLAIQPVI 299 (592)
T ss_dssp TTTSCCEEEECSSEE-----EETTSCEEEEEECCHHHH----HH------SCCSEEEEETGGGCTTH--HHHHHHHHHHH
T ss_pred HhhccccccCCccEE-----EecCCCEEEEEeCCCCCc----cC------CCcceEEEehhccCCch--hHHHHHHHHHh
Confidence 21211100 011100 112334444332 3332 11 34678999999966442 23344444444
Q ss_pred C--cccceeeEeeecc
Q psy16633 197 P--KLYQAILASATLS 210 (540)
Q Consensus 197 ~--~~~q~il~SATl~ 210 (540)
. ...+++++| |+.
T Consensus 300 ~~~~~~~ii~is-TP~ 314 (592)
T 3cpe_A 300 SSGRRSKIIITT-TPN 314 (592)
T ss_dssp SSSSCCEEEEEE-CCC
T ss_pred ccCCCceEEEEe-CCC
Confidence 3 234444444 443
No 104
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.61 E-value=0.0047 Score=63.24 Aligned_cols=104 Identities=17% Similarity=0.170 Sum_probs=60.2
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccc
Q psy16633 57 DVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQ 136 (540)
Q Consensus 57 d~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~ 136 (540)
-.++.|+.|||||... ..++ .....+|++||++++..+.+.+...+. .
T Consensus 163 v~~I~G~aGsGKTt~I-----~~~~--------~~~~~lVlTpT~~aa~~l~~kl~~~~~--------------~----- 210 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEI-----LSRV--------NFEEDLILVPGRQAAEMIRRRANASGI--------------I----- 210 (446)
T ss_dssp EEEEEECTTSCHHHHH-----HHHC--------CTTTCEEEESCHHHHHHHHHHHTTTSC--------------C-----
T ss_pred EEEEEcCCCCCHHHHH-----HHHh--------ccCCeEEEeCCHHHHHHHHHHhhhcCc--------------c-----
Confidence 4789999999999743 1221 114569999999999887776632200 0
Q ss_pred hhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeE
Q psy16633 137 EPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILA 205 (540)
Q Consensus 137 ~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~ 205 (540)
.....-|.|-+.++- ....... ...+++|||||- |...+ .+..++...+. .+++++
T Consensus 211 -----~~~~~~V~T~dsfL~--~~~~~~~-~~~d~liiDE~s-m~~~~---~l~~l~~~~~~-~~vilv 266 (446)
T 3vkw_A 211 -----VATKDNVRTVDSFLM--NYGKGAR-CQFKRLFIDEGL-MLHTG---CVNFLVEMSLC-DIAYVY 266 (446)
T ss_dssp -----CCCTTTEEEHHHHHH--TTTSSCC-CCCSEEEEETGG-GSCHH---HHHHHHHHTTC-SEEEEE
T ss_pred -----ccccceEEEeHHhhc--CCCCCCC-CcCCEEEEeCcc-cCCHH---HHHHHHHhCCC-CEEEEe
Confidence 011233677776542 2221111 247899999998 44433 33344444443 344443
No 105
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=96.54 E-value=0.014 Score=56.99 Aligned_cols=121 Identities=17% Similarity=0.066 Sum_probs=82.6
Q ss_pred cccHHHHHHHHHHhcc-cCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCc
Q psy16633 249 EDEKATILYTLLKLNL-VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327 (540)
Q Consensus 249 ~~~k~~~l~~ll~~~~-~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~ 327 (540)
...|+.+|..++.... .+.+++||++......-+..+|...++..+.+.|...... .+. .++...+.+.|.
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~-~k~----~~~~~~i~Llts--- 178 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSA-AAA----NDFSCTVHLFSS--- 178 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEES---
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhh-hhc----ccCCceEEEEEC---
Confidence 5678888888876432 3459999999999999999999999999999998854432 211 234445555454
Q ss_pred cCCcccccccccccccCccccccccCC-----CCCcCEEEeCCCCCCccc-chhccccccCCC----CCceEEEEecccc
Q psy16633 328 LETPQINSTNNRKRKRDKESGVSRGID-----FQFVSNVINFDFPLDIQC-YIHRAGRTARGK----NQGTALSFVSLRE 397 (540)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~GiD-----~~~v~~Vi~~d~p~s~~~-yiqr~GRagR~g----~~g~~i~~~~~~e 397 (540)
+.+-|++ ....+.||.||..+++.. .+|.+-|+.|.| +.-.++-+++...
T Consensus 179 --------------------ag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~T 238 (328)
T 3hgt_A 179 --------------------EGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINS 238 (328)
T ss_dssp --------------------SCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTS
T ss_pred --------------------CCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCC
Confidence 3334564 678999999999999887 488777766652 3556777777554
No 106
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.40 E-value=0.0022 Score=55.73 Aligned_cols=17 Identities=24% Similarity=0.431 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCchHHH
Q psy16633 54 QNKDVLVRARTGSGKTG 70 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~ 70 (540)
.|+.+++.+|+|+|||.
T Consensus 35 ~g~~~~l~G~~G~GKTt 51 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSH 51 (149)
T ss_dssp CCSEEEEESSSTTTTCH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 67889999999999996
No 107
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.39 E-value=0.0086 Score=53.49 Aligned_cols=30 Identities=30% Similarity=0.356 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHh---------cCCcEEEEcCCCchHHHH
Q psy16633 42 TLIQERAIPLIL---------QNKDVLVRARTGSGKTGA 71 (540)
Q Consensus 42 t~~Q~~ai~~il---------~gkd~li~a~TGsGKT~a 71 (540)
++-|++++..+. .|+.+++.||+|+|||..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL 54 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHL 54 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHH
Confidence 456777766554 367899999999999973
No 108
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=96.36 E-value=0.007 Score=66.28 Aligned_cols=71 Identities=17% Similarity=0.165 Sum_probs=54.2
Q ss_pred CChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHh
Q psy16633 40 EPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTM 116 (540)
Q Consensus 40 ~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~ 116 (540)
.+++-|++|+.. .+..++|.|+.|||||.+.+--+...+... .....++|+++.|+..+.++.+.+.....
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~----~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGC----GYQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHH----CCCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhc----CCCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 478999999974 367899999999999986544444433221 13567899999999999999998887643
No 109
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.31 E-value=0.029 Score=55.08 Aligned_cols=26 Identities=19% Similarity=0.190 Sum_probs=19.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHH
Q psy16633 55 NKDVLVRARTGSGKTGAFAIPMIQKII 81 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a~~ipil~~l~ 81 (540)
+.++++.||+|+|||++ +-.++..+.
T Consensus 45 ~~~lli~GpPGTGKT~~-v~~v~~~L~ 70 (318)
T 3te6_A 45 NKLFYITNADDSTKFQL-VNDVMDELI 70 (318)
T ss_dssp CCEEEEECCCSHHHHHH-HHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHHH
Confidence 45799999999999975 344455553
No 110
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.23 E-value=0.01 Score=65.45 Aligned_cols=72 Identities=18% Similarity=0.219 Sum_probs=54.9
Q ss_pred CCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHh
Q psy16633 39 LEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTM 116 (540)
Q Consensus 39 ~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~ 116 (540)
..+++-|++|+.. .+..++|.|+.|||||.+..--+...+... .....++|+++.|+..|.++.+.+..+..
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~----~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~ 81 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEK----HVAPWNILAITFTNKAAREMRERVQSLLG 81 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTT----CCCGGGEEEEESSHHHHHHHHHHHHHHHG
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhc----CCCHHHeEEEeccHHHHHHHHHHHHHHhc
Confidence 4689999999974 356899999999999986544444433221 13457899999999999999998887654
No 111
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.09 E-value=0.029 Score=50.49 Aligned_cols=40 Identities=20% Similarity=0.252 Sum_probs=27.5
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcH
Q psy16633 54 QNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSK 101 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~ 101 (540)
.|+-.++.++.|+|||... +-++..+.. .+.+++++.|..
T Consensus 2 ~g~i~vi~G~~gsGKTT~l-l~~~~~~~~-------~g~~v~~~~~~~ 41 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTEL-LSFVEIYKL-------GKKKVAVFKPKI 41 (184)
T ss_dssp CCCEEEEEESTTSSHHHHH-HHHHHHHHH-------TTCEEEEEEEC-
T ss_pred ccEEEEEECCCCCCHHHHH-HHHHHHHHH-------CCCeEEEEeecc
Confidence 3566889999999999854 334444322 466888988874
No 112
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.08 E-value=0.0032 Score=58.67 Aligned_cols=91 Identities=16% Similarity=0.302 Sum_probs=51.9
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCccc
Q psy16633 54 QNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDV 133 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~ 133 (540)
.|.-+++.+++|+|||.+. +-++..+. ..+.+++++.|...- . . ...+.... | .
T Consensus 11 ~G~i~litG~mGsGKTT~l-l~~~~r~~-------~~g~kVli~~~~~d~--r-~--~~~i~srl----------G-~-- 64 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAEL-IRRLHRLE-------YADVKYLVFKPKIDT--R-S--IRNIQSRT----------G-T-- 64 (223)
T ss_dssp CCEEEEEECSTTSCHHHHH-HHHHHHHH-------HTTCCEEEEEECCCG--G-G--CSSCCCCC----------C-C--
T ss_pred CcEEEEEECCCCCcHHHHH-HHHHHHHH-------hcCCEEEEEEeccCc--h-H--HHHHHHhc----------C-C--
Confidence 3556889999999999854 44444442 256788888876421 0 0 00000000 1 0
Q ss_pred ccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCcccc
Q psy16633 134 SVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLV 180 (540)
Q Consensus 134 ~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l 180 (540)
....+-+.+...++..+...... ...++|||||++.+
T Consensus 65 --------~~~~~~~~~~~~i~~~i~~~~~~--~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 65 --------SLPSVEVESAPEILNYIMSNSFN--DETKVIGIDEVQFF 101 (223)
T ss_dssp --------SSCCEEESSTHHHHHHHHSTTSC--TTCCEEEECSGGGS
T ss_pred --------CccccccCCHHHHHHHHHHHhhC--CCCCEEEEecCccC
Confidence 01123455666777766653221 45789999999954
No 113
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.80 E-value=0.068 Score=47.23 Aligned_cols=17 Identities=24% Similarity=0.438 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCchHHHH
Q psy16633 55 NKDVLVRARTGSGKTGA 71 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a 71 (540)
+..+++.||+|+|||..
T Consensus 43 ~~~vll~G~~G~GKT~l 59 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAI 59 (187)
T ss_dssp SCEEEEESCGGGCHHHH
T ss_pred CCceEEECCCCCCHHHH
Confidence 45799999999999974
No 114
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.75 E-value=0.023 Score=51.41 Aligned_cols=39 Identities=21% Similarity=0.237 Sum_probs=28.0
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcH
Q psy16633 55 NKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSK 101 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~ 101 (540)
|+=.++.+++|||||.+. +-++..+. ..+.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~l-l~~a~r~~-------~~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEEL-IRRIRRAK-------IAKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHH-HHHHHHHH-------HTTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHH-HHHHHHHH-------HCCCEEEEEEecc
Confidence 556789999999999754 44444442 3578899999873
No 115
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.54 E-value=0.062 Score=51.35 Aligned_cols=17 Identities=35% Similarity=0.358 Sum_probs=14.5
Q ss_pred CcEEEEcCCCchHHHHH
Q psy16633 56 KDVLVRARTGSGKTGAF 72 (540)
Q Consensus 56 kd~li~a~TGsGKT~a~ 72 (540)
..+++.||+|+|||..+
T Consensus 65 ~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALA 81 (272)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 46999999999999743
No 116
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=95.53 E-value=0.018 Score=67.39 Aligned_cols=72 Identities=29% Similarity=0.306 Sum_probs=55.6
Q ss_pred CChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHH
Q psy16633 40 EPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELT 115 (540)
Q Consensus 40 ~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~ 115 (540)
.+|+-|.++|.. .+++++|.|..|||||.+.+--++..+.... ......++|++++|+..+.++.+.+....
T Consensus 10 ~~t~eQ~~~i~~--~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~--~~~~~~~il~~Tft~~aa~e~~~ri~~~l 81 (1232)
T 3u4q_A 10 TWTDDQWNAIVS--TGQDILVAAAAGSGKTAVLVERMIRKITAEE--NPIDVDRLLVVTFTNASAAEMKHRIAEAL 81 (1232)
T ss_dssp CCCHHHHHHHHC--CSSCEEEEECTTCCHHHHHHHHHHHHHSCSS--SCCCGGGEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcCC--CCCCccceEEEeccHHHHHHHHHHHHHHH
Confidence 689999999975 3789999999999999876655555553311 01245689999999999999998887743
No 117
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.36 E-value=0.043 Score=53.99 Aligned_cols=17 Identities=24% Similarity=0.456 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCchHHHH
Q psy16633 55 NKDVLVRARTGSGKTGA 71 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a 71 (540)
+..+++.||+|+|||..
T Consensus 37 ~~~lll~G~~GtGKT~l 53 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHL 53 (324)
T ss_dssp CSSEEEECSSSSSHHHH
T ss_pred CCeEEEECCCCCcHHHH
Confidence 35799999999999974
No 118
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.13 E-value=0.027 Score=51.72 Aligned_cols=40 Identities=18% Similarity=0.225 Sum_probs=27.2
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHH
Q psy16633 55 NKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKE 102 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~ 102 (540)
|+=.++.++.|||||.+ ++-.+..+. ..+.+++++.|.+.
T Consensus 28 G~l~vitG~MgsGKTT~-lL~~a~r~~-------~~g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEE-LIRRVRRTQ-------FAKQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHH-HHHHHHHHH-------HTTCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHH-HHHHHHHHH-------HCCCEEEEEEeccC
Confidence 44467899999999975 444444432 36788999999764
No 119
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.09 E-value=0.66 Score=40.67 Aligned_cols=16 Identities=25% Similarity=0.439 Sum_probs=14.3
Q ss_pred CcEEEEcCCCchHHHH
Q psy16633 56 KDVLVRARTGSGKTGA 71 (540)
Q Consensus 56 kd~li~a~TGsGKT~a 71 (540)
..+++.||+|+|||..
T Consensus 44 ~~~ll~G~~G~GKT~l 59 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAI 59 (195)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred CceEEECCCCCCHHHH
Confidence 5799999999999974
No 120
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=94.91 E-value=0.086 Score=58.30 Aligned_cols=77 Identities=17% Similarity=0.159 Sum_probs=65.0
Q ss_pred cCCcEEEEecChhhHHHHHHHHHh----CCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccccccc
Q psy16633 265 VQGKTIIFVNTVDKCYKLKLYLEQ----FKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRK 340 (540)
Q Consensus 265 ~~~k~IIF~~s~~~~~~l~~~L~~----~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~ 340 (540)
.+.+++|.++++.-+...+..+.+ .++++..+||+++..+|..++..+.+|..+|+|+|..
T Consensus 416 ~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~--------------- 480 (780)
T 1gm5_A 416 AGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHA--------------- 480 (780)
T ss_dssp HTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTT---------------
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHH---------------
Confidence 457899999999888877766654 4799999999999999999999999999999999983
Q ss_pred cccCccccccccCCCCCcCEEEe
Q psy16633 341 RKRDKESGVSRGIDFQFVSNVIN 363 (540)
Q Consensus 341 ~~~~~~~~~~~GiD~~~v~~Vi~ 363 (540)
.+...+++.++.+||.
T Consensus 481 -------ll~~~~~~~~l~lVVI 496 (780)
T 1gm5_A 481 -------LIQEDVHFKNLGLVII 496 (780)
T ss_dssp -------HHHHCCCCSCCCEEEE
T ss_pred -------HHhhhhhccCCceEEe
Confidence 4556678888887774
No 121
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.89 E-value=0.051 Score=50.41 Aligned_cols=41 Identities=17% Similarity=0.293 Sum_probs=29.2
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHH
Q psy16633 54 QNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKE 102 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~ 102 (540)
.|+=.++.++.|||||.+. +-.+.+.. ..+.+++++-|.+.
T Consensus 18 ~g~l~v~~G~MgsGKTT~l-L~~~~r~~-------~~g~kvli~kp~~D 58 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTEL-MRRVRRFQ-------IAQYKCLVIKYAKD 58 (234)
T ss_dssp CCEEEEEECCTTSCHHHHH-HHHHHHHH-------TTTCCEEEEEETTC
T ss_pred ceEEEEEECCCCCcHHHHH-HHHHHHHH-------HCCCeEEEEeecCC
Confidence 3666889999999999754 33333332 46888999988753
No 122
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.85 E-value=0.095 Score=52.44 Aligned_cols=17 Identities=35% Similarity=0.536 Sum_probs=14.9
Q ss_pred CCcEEEEcCCCchHHHH
Q psy16633 55 NKDVLVRARTGSGKTGA 71 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a 71 (540)
+..+++.||+|+|||..
T Consensus 44 ~~~vll~G~~G~GKT~l 60 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAV 60 (387)
T ss_dssp CCCEEECBCTTSSHHHH
T ss_pred CCcEEEECCCCCCHHHH
Confidence 46799999999999974
No 123
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.57 E-value=0.11 Score=50.73 Aligned_cols=26 Identities=19% Similarity=0.318 Sum_probs=18.8
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHH
Q psy16633 55 NKDVLVRARTGSGKTGAFAIPMIQKII 81 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a~~ipil~~l~ 81 (540)
++++++.||+|+|||..+ ..+...+.
T Consensus 152 ~~~lll~G~~GtGKT~La-~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLL-AAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHH-HHHHHHHH
T ss_pred CceEEEECCCCCCHHHHH-HHHHHHHH
Confidence 578999999999999743 34444443
No 124
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.53 E-value=0.053 Score=50.26 Aligned_cols=17 Identities=18% Similarity=0.241 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCchHHHH
Q psy16633 55 NKDVLVRARTGSGKTGA 71 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a 71 (540)
+..+++.||+|+|||..
T Consensus 52 ~~~~ll~G~~G~GKT~l 68 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHL 68 (242)
T ss_dssp CSEEEEECSTTSSHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 57899999999999974
No 125
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=94.39 E-value=0.051 Score=49.05 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=28.3
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCc
Q psy16633 54 QNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPS 100 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt 100 (540)
.|+=.++.++.|||||.. ++-.+..... .+.+++++.|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~-Ll~~i~n~~~-------~~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTE-LMRRVRRFQI-------AQYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHH-HHHHHHHHHH-------TTCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHH-HHHHHHHHHH-------cCCeEEEEccc
Confidence 366789999999999963 4444444432 46889999887
No 126
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=94.37 E-value=0.075 Score=57.18 Aligned_cols=113 Identities=19% Similarity=0.274 Sum_probs=71.2
Q ss_pred CChHHHHHHHHHHhc--CCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhh
Q psy16633 40 EPTLIQERAIPLILQ--NKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMK 117 (540)
Q Consensus 40 ~pt~~Q~~ai~~il~--gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~ 117 (540)
.+|.-|++|+..++. ..-.++.|+-|.|||.+.-+.+- .+ ..+++|..|+.+-+..+.+ +...
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a-~~----------~~~~~vtAP~~~a~~~l~~----~~~~ 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLIS-RI----------AGRAIVTAPAKASTDVLAQ----FAGE 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHH-HS----------SSCEEEECSSCCSCHHHHH----HHGG
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHH-HH----------HhCcEEECCCHHHHHHHHH----HhhC
Confidence 578999999998887 33479999999999965444433 22 1236999999885543322 2211
Q ss_pred cCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCCcHHHHHHHHHhCC
Q psy16633 118 CSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLP 197 (540)
Q Consensus 118 ~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~l~ 197 (540)
.|-+..|+.+.. .. ...+++|||||=.+. ...+..++..
T Consensus 240 ---------------------------~i~~~~Pd~~~~-------~~-~~~dlliVDEAAaIp----~pll~~ll~~-- 278 (671)
T 2zpa_A 240 ---------------------------KFRFIAPDALLA-------SD-EQADWLVVDEAAAIP----APLLHQLVSR-- 278 (671)
T ss_dssp ---------------------------GCCBCCHHHHHH-------SC-CCCSEEEEETGGGSC----HHHHHHHHTT--
T ss_pred ---------------------------CeEEeCchhhhh-------Cc-ccCCEEEEEchhcCC----HHHHHHHHhh--
Confidence 022345655331 11 458899999998553 2345555543
Q ss_pred cccceeeEeeecc
Q psy16633 198 KLYQAILASATLS 210 (540)
Q Consensus 198 ~~~q~il~SATl~ 210 (540)
...++||.|..
T Consensus 279 --~~~v~~~tTv~ 289 (671)
T 2zpa_A 279 --FPRTLLTTTVQ 289 (671)
T ss_dssp --SSEEEEEEEBS
T ss_pred --CCeEEEEecCC
Confidence 33577787864
No 127
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.36 E-value=0.28 Score=44.27 Aligned_cols=141 Identities=19% Similarity=0.188 Sum_probs=75.1
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHH-HHHHHHHHHHHHHhhcCCCceEEEeecCcccc
Q psy16633 56 KDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKE-LCNQLHKNIQELTMKCSRDVKCVDISEQVDVS 134 (540)
Q Consensus 56 kd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~-La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~ 134 (540)
..+++..++|.|||.+++--++..+ ..|.+|+|+.=.+. ....=.+.+..+ .+.+.....+....
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~--------g~G~rV~~vQF~Kg~~~~gE~~~l~~L------~v~~~~~g~gf~~~ 94 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAV--------GHGKNVGVVQFIKGTWPNGERNLLEPH------GVEFQVMATGFTWE 94 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHH--------HTTCCEEEEESSCCSSCCHHHHHHGGG------TCEEEECCTTCCCC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH--------HCCCeEEEEEeeCCCCCccHHHHHHhC------CcEEEEcccccccC
Confidence 4699999999999998776666555 46888888832221 000001122222 12222221111000
Q ss_pred cchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCccEEEEcCccccccCCcH--HHHHHHHHhCCcccceeeEeeeccHH
Q psy16633 135 VQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYE--DDMKAVLKFLPKLYQAILASATLSED 212 (540)
Q Consensus 135 ~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~~~~--~~l~~i~~~l~~~~q~il~SATl~~~ 212 (540)
.+. ... +. ......+...... +.- ..+++||+||+-..+.+++- +++..++...|...-+|+.+--.|+.
T Consensus 95 ~~~--~~~--~~--~~a~~~l~~a~~~-l~~-~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~ 166 (196)
T 1g5t_A 95 TQN--REA--DT--AACMAVWQHGKRM-LAD-PLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRD 166 (196)
T ss_dssp GGG--HHH--HH--HHHHHHHHHHHHH-TTC-TTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHH
T ss_pred CCC--cHH--HH--HHHHHHHHHHHHH-Hhc-CCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHH
Confidence 000 000 00 0001112222221 111 57899999999876666543 56777777778777788888788887
Q ss_pred HHHHHH
Q psy16633 213 VLSLKH 218 (540)
Q Consensus 213 ~~~~~~ 218 (540)
+...+.
T Consensus 167 l~e~AD 172 (196)
T 1g5t_A 167 ILDLAD 172 (196)
T ss_dssp HHHHCS
T ss_pred HHHhCc
Confidence 766554
No 128
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.36 E-value=0.068 Score=52.46 Aligned_cols=40 Identities=13% Similarity=0.197 Sum_probs=25.1
Q ss_pred CCccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEe
Q psy16633 167 SSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206 (540)
Q Consensus 167 ~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~S 206 (540)
...++++|||+|.+........+..++...+...++|+.+
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~ 143 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITA 143 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEE
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 4678999999998762223444555555555555666543
No 129
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.33 E-value=0.12 Score=53.14 Aligned_cols=16 Identities=25% Similarity=0.395 Sum_probs=14.3
Q ss_pred CcEEEEcCCCchHHHH
Q psy16633 56 KDVLVRARTGSGKTGA 71 (540)
Q Consensus 56 kd~li~a~TGsGKT~a 71 (540)
..+++.||+|+|||..
T Consensus 131 ~~lll~Gp~G~GKTtL 146 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHL 146 (440)
T ss_dssp CCEEEECSSSSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 5799999999999974
No 130
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.23 E-value=0.14 Score=46.33 Aligned_cols=16 Identities=31% Similarity=0.383 Sum_probs=14.5
Q ss_pred CcEEEEcCCCchHHHH
Q psy16633 56 KDVLVRARTGSGKTGA 71 (540)
Q Consensus 56 kd~li~a~TGsGKT~a 71 (540)
+.+++.||+|+|||..
T Consensus 55 ~~~~l~G~~GtGKT~l 70 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYL 70 (202)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 6799999999999974
No 131
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.17 E-value=0.09 Score=52.74 Aligned_cols=16 Identities=38% Similarity=0.272 Sum_probs=14.2
Q ss_pred CcEEEEcCCCchHHHH
Q psy16633 56 KDVLVRARTGSGKTGA 71 (540)
Q Consensus 56 kd~li~a~TGsGKT~a 71 (540)
+.+++.||+|+|||..
T Consensus 46 ~~vll~G~~G~GKT~l 61 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFV 61 (384)
T ss_dssp CEEEEEECTTSSHHHH
T ss_pred CcEEEECCCCCCHHHH
Confidence 4699999999999974
No 132
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.15 E-value=0.48 Score=42.76 Aligned_cols=40 Identities=20% Similarity=0.372 Sum_probs=24.9
Q ss_pred CCccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEee
Q psy16633 167 SSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207 (540)
Q Consensus 167 ~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~SA 207 (540)
..-.+|||||+|.+... ....+..++...+....+++.|.
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~~ 140 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSCN 140 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEES
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEeC
Confidence 45678999999977542 23445555555555555555543
No 133
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=93.98 E-value=0.081 Score=52.33 Aligned_cols=38 Identities=11% Similarity=0.206 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHh----cCC---cEEEEcCCCchHHHHHHHHHHHHH
Q psy16633 42 TLIQERAIPLIL----QNK---DVLVRARTGSGKTGAFAIPMIQKI 80 (540)
Q Consensus 42 t~~Q~~ai~~il----~gk---d~li~a~TGsGKT~a~~ipil~~l 80 (540)
.|+|.+++..+. +|+ .+++.||.|+|||..+ ..+.+.+
T Consensus 4 ~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a-~~la~~l 48 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALI-YALSRYL 48 (334)
T ss_dssp CGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHH-HHHHHHH
T ss_pred CCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHH-HHHHHHH
Confidence 467777665443 343 3899999999999743 3344444
No 134
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.96 E-value=0.24 Score=51.03 Aligned_cols=115 Identities=18% Similarity=0.129 Sum_probs=55.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccc
Q psy16633 55 NKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVS 134 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~ 134 (540)
|.-+++.|++|+|||. +++-+...+.. ..+..++++..--. ..|+...+....... +..- ...|.....
T Consensus 200 G~l~ii~G~pg~GKT~-lal~ia~~~a~------~~g~~vl~~slE~~-~~~l~~R~~~~~~~i--~~~~-l~~g~l~~~ 268 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTA-FALTIAQNAAL------KEGVGVGIYSLEMP-AAQLTLRMMCSEARI--DMNR-VRLGQLTDR 268 (444)
T ss_dssp TCEEEEEECTTSCHHH-HHHHHHHHHHH------TTCCCEEEEESSSC-HHHHHHHHHHHHTTC--CTTT-CCGGGCCHH
T ss_pred CcEEEEEeCCCCCHHH-HHHHHHHHHHH------hCCCeEEEEECCCC-HHHHHHHHHHHHcCC--CHHH-HhCCCCCHH
Confidence 3558999999999996 45544444432 23556777754321 234444433221111 1100 001111111
Q ss_pred cch------hhhhCCCCEEEE-----ChHHHHHHHhcCcCCccCCccEEEEcCccccccC
Q psy16633 135 VQE------PLLVERPDIVVA-----TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSF 183 (540)
Q Consensus 135 ~~~------~~l~~~~~Ivv~-----Tp~~l~~~l~~~~~~~~~~l~~lViDEah~l~~~ 183 (540)
.+. ..+. ...+.+. |+..+...+..-... ..+++||||..+.+...
T Consensus 269 ~~~~~~~a~~~l~-~~~l~i~d~~~~s~~~l~~~~~~l~~~--~~~~lIvID~l~~~~~~ 325 (444)
T 2q6t_A 269 DFSRLVDVASRLS-EAPIYIDDTPDLTLMEVRARARRLVSQ--NQVGLIIIDYLQLMSGP 325 (444)
T ss_dssp HHHHHHHHHHHHH-TSCEEEECCTTCBHHHHHHHHHHHHHH--SCCCEEEEECGGGCBCC
T ss_pred HHHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHH--cCCCEEEEcChhhcCCC
Confidence 111 0111 2345553 345555444321111 35889999999988754
No 135
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=93.93 E-value=0.036 Score=50.83 Aligned_cols=41 Identities=20% Similarity=0.217 Sum_probs=27.9
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHH
Q psy16633 54 QNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKE 102 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~ 102 (540)
.|.=.++.++.|||||.. ++..+..+. ..+.+++++.|...
T Consensus 27 ~G~I~vitG~M~sGKTT~-Llr~~~r~~-------~~g~kvli~kp~~D 67 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEE-LIRRLRRGI-------YAKQKVVVFKPAID 67 (219)
T ss_dssp CCEEEEEEECTTSCHHHH-HHHHHHHHH-------HTTCCEEEEEEC--
T ss_pred CceEEEEECCCCCCHHHH-HHHHHHHHH-------HcCCceEEEEeccC
Confidence 355578999999999974 444444443 24678899998753
No 136
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.81 E-value=0.33 Score=49.62 Aligned_cols=48 Identities=17% Similarity=0.245 Sum_probs=30.5
Q ss_pred CCccEEEEcCccccc---cCCcHHHHHHHHHhCCcccceeeEeeeccHHHH
Q psy16633 167 SSLEIVIIDEADLVF---SFGYEDDMKAVLKFLPKLYQAILASATLSEDVL 214 (540)
Q Consensus 167 ~~l~~lViDEah~l~---~~~~~~~l~~i~~~l~~~~q~il~SATl~~~~~ 214 (540)
...+++|||++-++. +..+-..+..+...+.+..-++.++|+...+..
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~ 228 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAY 228 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGH
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHH
Confidence 468899999998543 333445566666655555556777777654433
No 137
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=93.68 E-value=0.082 Score=51.37 Aligned_cols=16 Identities=25% Similarity=0.376 Sum_probs=14.2
Q ss_pred CcEEEEcCCCchHHHH
Q psy16633 56 KDVLVRARTGSGKTGA 71 (540)
Q Consensus 56 kd~li~a~TGsGKT~a 71 (540)
.++++.||+|+|||..
T Consensus 68 ~~vll~G~~GtGKT~l 83 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTV 83 (309)
T ss_dssp CEEEEEECTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 4699999999999974
No 138
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.67 E-value=0.14 Score=51.44 Aligned_cols=15 Identities=33% Similarity=0.470 Sum_probs=13.8
Q ss_pred cEEEEcCCCchHHHH
Q psy16633 57 DVLVRARTGSGKTGA 71 (540)
Q Consensus 57 d~li~a~TGsGKT~a 71 (540)
.+++.||+|+|||..
T Consensus 46 ~~li~G~~G~GKTtl 60 (389)
T 1fnn_A 46 RATLLGRPGTGKTVT 60 (389)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 799999999999974
No 139
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.60 E-value=0.19 Score=51.93 Aligned_cols=38 Identities=26% Similarity=0.427 Sum_probs=25.2
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcC
Q psy16633 55 NKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSP 99 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~P 99 (540)
|.-+++.|++|+|||. +++-+...+.. ..+..++|+..
T Consensus 203 G~liiI~G~pG~GKTt-l~l~ia~~~~~------~~g~~Vl~~s~ 240 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTA-FALNIAQNVAT------KTNENVAIFSL 240 (454)
T ss_dssp TCEEEEECCTTSCHHH-HHHHHHHHHHH------HSSCCEEEEES
T ss_pred CCEEEEECCCCCCHHH-HHHHHHHHHHH------hCCCcEEEEEC
Confidence 4568999999999997 44444444432 13556777764
No 140
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.53 E-value=0.23 Score=49.14 Aligned_cols=42 Identities=17% Similarity=0.282 Sum_probs=28.2
Q ss_pred CCccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEeeec
Q psy16633 167 SSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209 (540)
Q Consensus 167 ~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~SATl 209 (540)
.+.+++|+||+|. ++......+..++...+....+|+.|..+
T Consensus 133 ~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 133 HRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred CCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 4678999999998 45444556666677666666666665443
No 141
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.49 E-value=0.48 Score=43.94 Aligned_cols=50 Identities=18% Similarity=0.217 Sum_probs=29.7
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHH
Q psy16633 54 QNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQ 112 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~ 112 (540)
.|.-+++.|++|+|||.. ++-++..+.. .+..++++.-. +-..++.+.+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl-~~~~~~~~~~-------~~~~v~~~~~e-~~~~~~~~~~~ 71 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIF-SQQFLWNGLK-------MGEPGIYVALE-EHPVQVRQNMA 71 (247)
T ss_dssp TTCEEEEEECTTSSHHHH-HHHHHHHHHH-------TTCCEEEEESS-SCHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHH-HHHHHHHHHh-------cCCeEEEEEcc-CCHHHHHHHHH
Confidence 467799999999999974 3333333322 35567776533 22344444444
No 142
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=92.40 E-value=0.33 Score=47.56 Aligned_cols=16 Identities=25% Similarity=0.443 Sum_probs=14.4
Q ss_pred CcEEEEcCCCchHHHH
Q psy16633 56 KDVLVRARTGSGKTGA 71 (540)
Q Consensus 56 kd~li~a~TGsGKT~a 71 (540)
+.+++.||+|+|||..
T Consensus 52 ~~vLl~GppGtGKT~l 67 (322)
T 3eie_A 52 SGILLYGPPGTGKSYL 67 (322)
T ss_dssp CEEEEECSSSSCHHHH
T ss_pred CeEEEECCCCCcHHHH
Confidence 5699999999999974
No 143
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=92.35 E-value=0.44 Score=48.23 Aligned_cols=62 Identities=15% Similarity=0.136 Sum_probs=56.1
Q ss_pred ccCCcEEEEecChhhHHHHHHHHHh---CCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCC
Q psy16633 264 LVQGKTIIFVNTVDKCYKLKLYLEQ---FKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE 325 (540)
Q Consensus 264 ~~~~k~IIF~~s~~~~~~l~~~L~~---~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~ 325 (540)
..++++||.+|++.-+..++..+.+ .++++..++|+.+..++......+..|..+|+|+|..
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~ 126 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQ 126 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHH
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHH
Confidence 3567899999999999999999988 5889999999999999988999999999999999983
No 144
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=92.14 E-value=0.48 Score=45.20 Aligned_cols=18 Identities=33% Similarity=0.442 Sum_probs=15.4
Q ss_pred cCCcEEEEcCCCchHHHH
Q psy16633 54 QNKDVLVRARTGSGKTGA 71 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~a 71 (540)
.++.+++.||+|+|||..
T Consensus 50 ~~~~~ll~G~~GtGKT~l 67 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLL 67 (285)
T ss_dssp CCSEEEEESSSSSSHHHH
T ss_pred CCCeEEEECCCCCcHHHH
Confidence 356799999999999974
No 145
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=91.97 E-value=0.52 Score=46.28 Aligned_cols=16 Identities=31% Similarity=0.472 Sum_probs=14.3
Q ss_pred CcEEEEcCCCchHHHH
Q psy16633 56 KDVLVRARTGSGKTGA 71 (540)
Q Consensus 56 kd~li~a~TGsGKT~a 71 (540)
..+++.||+|+|||..
T Consensus 56 ~~vll~G~~GtGKT~l 71 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTL 71 (338)
T ss_dssp CCEEEECSTTSSHHHH
T ss_pred CeEEEECcCCCCHHHH
Confidence 4799999999999974
No 146
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=91.63 E-value=0.095 Score=51.85 Aligned_cols=48 Identities=25% Similarity=0.322 Sum_probs=29.7
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHH
Q psy16633 55 NKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNI 111 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l 111 (540)
|.-+++.|++|+|||. +++-++..+.. .+..++|++.-- -..|+...+
T Consensus 46 G~LiiIaG~pG~GKTt-~al~ia~~~a~-------~g~~Vl~fSlEm-s~~ql~~Rl 93 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTS-LMMNMVLSALN-------DDRGVAVFSLEM-SAEQLALRA 93 (338)
T ss_dssp TCEEEEEECTTSCHHH-HHHHHHHHHHH-------TTCEEEEEESSS-CHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHH-HHHHHHHHHHH-------cCCeEEEEeCCC-CHHHHHHHH
Confidence 4569999999999997 44444444322 466788876432 234444443
No 147
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=91.55 E-value=1.1 Score=45.83 Aligned_cols=124 Identities=14% Similarity=0.168 Sum_probs=61.2
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEc--CcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccc
Q psy16633 57 DVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLS--PSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVS 134 (540)
Q Consensus 57 d~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~--Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~ 134 (540)
-+++.+++|+|||.... -+...+ . ..+.+++++. |.|.-+ .+++..++... ++.+.....+
T Consensus 102 vIlivG~~G~GKTTt~~-kLA~~l-~------~~G~kVllv~~D~~R~aa---~eqL~~~~~~~--gvpv~~~~~~---- 164 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVA-KLARYF-Q------KRGYKVGVVCSDTWRPGA---YHQLRQLLDRY--HIEVFGNPQE---- 164 (443)
T ss_dssp EEEEECCTTSSHHHHHH-HHHHHH-H------TTTCCEEEEECCCSSTHH---HHHHHHHHGGG--TCEEECCTTC----
T ss_pred EEEEECcCCCCHHHHHH-HHHHHH-H------HCCCeEEEEeCCCcchhH---HHHHHHHHHhc--CCcEEecCCC----
Confidence 47899999999997533 222333 2 2456666654 444433 34455555444 2332211110
Q ss_pred cchhhhhCCCCEEEEChHHHH-HHHhcCcCCccCCccEEEEcCccccccC-CcHHHHHHHHHhCCcccceeeEeeeccHH
Q psy16633 135 VQEPLLVERPDIVVATPARAL-AHLKAKTLDLKSSLEIVIIDEADLVFSF-GYEDDMKAVLKFLPKLYQAILASATLSED 212 (540)
Q Consensus 135 ~~~~~l~~~~~Ivv~Tp~~l~-~~l~~~~~~~~~~l~~lViDEah~l~~~-~~~~~l~~i~~~l~~~~q~il~SATl~~~ 212 (540)
..|..+. +.+.... . ...+++|||.+=++... ..-..+..+.....+..-++.++||...+
T Consensus 165 --------------~dp~~i~~~al~~a~--~-~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~ 227 (443)
T 3dm5_A 165 --------------KDAIKLAKEGVDYFK--S-KGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQ 227 (443)
T ss_dssp --------------CCHHHHHHHHHHHHH--H-TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG
T ss_pred --------------CCHHHHHHHHHHHHH--h-CCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchh
Confidence 1233322 2222111 0 34788999998643221 12234444444444444566677776544
Q ss_pred HH
Q psy16633 213 VL 214 (540)
Q Consensus 213 ~~ 214 (540)
..
T Consensus 228 a~ 229 (443)
T 3dm5_A 228 AY 229 (443)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 148
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=90.77 E-value=0.84 Score=45.29 Aligned_cols=17 Identities=29% Similarity=0.595 Sum_probs=14.9
Q ss_pred CCcEEEEcCCCchHHHH
Q psy16633 55 NKDVLVRARTGSGKTGA 71 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a 71 (540)
+..+++.||+|+|||..
T Consensus 45 ~~~vli~G~~G~GKTtl 61 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAV 61 (386)
T ss_dssp CCCEEEEECTTSSHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 46799999999999974
No 149
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=90.67 E-value=0.58 Score=46.54 Aligned_cols=16 Identities=25% Similarity=0.443 Sum_probs=14.3
Q ss_pred CcEEEEcCCCchHHHH
Q psy16633 56 KDVLVRARTGSGKTGA 71 (540)
Q Consensus 56 kd~li~a~TGsGKT~a 71 (540)
+.+++.||+|+|||..
T Consensus 85 ~~iLL~GppGtGKT~l 100 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYL 100 (355)
T ss_dssp CCEEEECSTTSCHHHH
T ss_pred ceEEEECCCCCcHHHH
Confidence 5799999999999974
No 150
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=90.66 E-value=1.5 Score=43.36 Aligned_cols=39 Identities=18% Similarity=0.289 Sum_probs=23.0
Q ss_pred CCccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEe
Q psy16633 167 SSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206 (540)
Q Consensus 167 ~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~S 206 (540)
....++||||+|.+... ....+...+...+....+|+.+
T Consensus 118 ~~~~vliiDe~~~l~~~-~~~~Ll~~le~~~~~~~~Il~~ 156 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHVKFLLAT 156 (373)
T ss_dssp SSSEEEEEECGGGSCHH-HHHHHHHHHHSCCSSEEEEEEE
T ss_pred CCeEEEEEECcchhcHH-HHHHHHHHHhcCCCceEEEEEe
Confidence 45679999999977532 2234444455445444444444
No 151
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.51 E-value=0.56 Score=46.16 Aligned_cols=39 Identities=18% Similarity=0.277 Sum_probs=24.7
Q ss_pred CCccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEe
Q psy16633 167 SSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206 (540)
Q Consensus 167 ~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~S 206 (540)
....+|++||+|.+... ....+..++...+....+++.+
T Consensus 132 ~~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~~~~il~~ 170 (353)
T 1sxj_D 132 PPYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLIC 170 (353)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEECCCccCHH-HHHHHHHHHHhcCCCceEEEEe
Confidence 35579999999977542 2344555566555555566544
No 152
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.48 E-value=0.54 Score=47.39 Aligned_cols=17 Identities=35% Similarity=0.454 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCchHHHH
Q psy16633 55 NKDVLVRARTGSGKTGA 71 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a 71 (540)
-+.+|+.||+|+|||+.
T Consensus 182 prGvLL~GPPGTGKTll 198 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLL 198 (405)
T ss_dssp CCCEEEESCSSSSHHHH
T ss_pred CCceEEeCCCCCCHHHH
Confidence 37899999999999974
No 153
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=90.45 E-value=0.78 Score=41.91 Aligned_cols=18 Identities=28% Similarity=0.250 Sum_probs=15.3
Q ss_pred cCCcEEEEcCCCchHHHH
Q psy16633 54 QNKDVLVRARTGSGKTGA 71 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~a 71 (540)
.|.-+++.+|+|+|||..
T Consensus 22 ~G~~~~i~G~~GsGKTtl 39 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIF 39 (235)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEEcCCCCCHHHH
Confidence 466789999999999963
No 154
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=90.40 E-value=1.1 Score=43.24 Aligned_cols=39 Identities=21% Similarity=0.380 Sum_probs=24.3
Q ss_pred CCccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEe
Q psy16633 167 SSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206 (540)
Q Consensus 167 ~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~S 206 (540)
....++||||+|.+... ....+..++...+....+++.+
T Consensus 109 ~~~~vliiDe~~~l~~~-~~~~L~~~le~~~~~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFILSC 147 (327)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEEeCCCcCCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 45679999999977542 2344555555555555555544
No 155
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=90.16 E-value=0.98 Score=45.41 Aligned_cols=16 Identities=31% Similarity=0.447 Sum_probs=13.5
Q ss_pred CcEEE--EcCCCchHHHH
Q psy16633 56 KDVLV--RARTGSGKTGA 71 (540)
Q Consensus 56 kd~li--~a~TGsGKT~a 71 (540)
..+++ .|++|+|||..
T Consensus 51 ~~~li~i~G~~G~GKT~L 68 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTL 68 (412)
T ss_dssp EEEEEECTTCCSSSHHHH
T ss_pred CEEEEeCcCcCCCCHHHH
Confidence 35888 99999999974
No 156
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=89.79 E-value=0.81 Score=44.61 Aligned_cols=50 Identities=22% Similarity=0.201 Sum_probs=30.0
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHH
Q psy16633 55 NKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQE 113 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~ 113 (540)
|.-+++.|++|+|||. +++-+...+.. .+..+++++-- .-..|+...+..
T Consensus 68 G~l~li~G~pG~GKTt-l~l~ia~~~a~-------~g~~vl~~slE-~s~~~l~~R~~~ 117 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTA-FALKQAKNMSD-------NDDVVNLHSLE-MGKKENIKRLIV 117 (315)
T ss_dssp TCEEEEECCTTSSHHH-HHHHHHHHHHT-------TTCEEEEEESS-SCHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHH-HHHHHHHHHHH-------cCCeEEEEECC-CCHHHHHHHHHH
Confidence 4569999999999996 44444433322 34678887643 223444444443
No 157
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=89.79 E-value=1 Score=52.15 Aligned_cols=76 Identities=12% Similarity=0.179 Sum_probs=62.9
Q ss_pred cCCcEEEEecChhhHHHHHHHHHh----CCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCCCccCCcccccccccc
Q psy16633 265 VQGKTIIFVNTVDKCYKLKLYLEQ----FKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRK 340 (540)
Q Consensus 265 ~~~k~IIF~~s~~~~~~l~~~L~~----~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~~~~~~~~~~~~~~~~ 340 (540)
.+.+++|.|+++.-+...+..+.+ .++.+..+++..+..++..++.....|..+|+|+|..
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~--------------- 715 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHK--------------- 715 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTH---------------
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHH---------------
Confidence 456899999999988888777764 3678999999999999999999999999999999973
Q ss_pred cccCccccccccCCCCCcCEEE
Q psy16633 341 RKRDKESGVSRGIDFQFVSNVI 362 (540)
Q Consensus 341 ~~~~~~~~~~~GiD~~~v~~Vi 362 (540)
.+...+.+.++.+||
T Consensus 716 -------ll~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 716 -------LLQSDVKFKDLGLLI 730 (1151)
T ss_dssp -------HHHSCCCCSSEEEEE
T ss_pred -------HHhCCccccccceEE
Confidence 455556777777666
No 158
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=89.62 E-value=1.4 Score=42.80 Aligned_cols=39 Identities=13% Similarity=0.196 Sum_probs=25.0
Q ss_pred CCccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEe
Q psy16633 167 SSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206 (540)
Q Consensus 167 ~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~S 206 (540)
...+++||||||.|.... .+.+.+.++.-|+...+|+.+
T Consensus 81 ~~~kvviIdead~lt~~a-~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQA-ANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp SSSEEEEETTGGGBCHHH-HHHTHHHHHSCCTTEEEEEEE
T ss_pred CCceEEEeccHHHhCHHH-HHHHHHHHhCCCCCeEEEEEE
Confidence 568899999999886433 234555555555555555554
No 159
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.46 E-value=1.4 Score=43.34 Aligned_cols=39 Identities=18% Similarity=0.320 Sum_probs=25.8
Q ss_pred CCccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEe
Q psy16633 167 SSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206 (540)
Q Consensus 167 ~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~S 206 (540)
...+++|+||+|.+... -...+..+++..+....+++.+
T Consensus 109 ~~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNA-AQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhcCCCCeEEEEEe
Confidence 45789999999977542 3445666666666665555543
No 160
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=89.18 E-value=0.58 Score=48.10 Aligned_cols=37 Identities=27% Similarity=0.354 Sum_probs=25.8
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcC
Q psy16633 55 NKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSP 99 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~P 99 (540)
|.-+++.|++|+|||. +++-++..+.. .+..++|++-
T Consensus 197 G~liiIaG~pG~GKTt-lal~ia~~~a~-------~g~~vl~fSl 233 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTA-FALKQAKNMSD-------NDDVVNLHSL 233 (444)
T ss_dssp SCEEEEEECSSSSHHH-HHHHHHHHHHH-------TTCEEEEECS
T ss_pred CcEEEEEeCCCCChHH-HHHHHHHHHHH-------cCCEEEEEEC
Confidence 4559999999999997 45554444432 2667888764
No 161
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=88.63 E-value=1.4 Score=45.73 Aligned_cols=51 Identities=18% Similarity=0.302 Sum_probs=38.8
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHH
Q psy16633 54 QNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELT 115 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~ 115 (540)
.|....+.+-||||||++ ++.+ .. ..+..+|||+|+...|.|+++.++.+.
T Consensus 13 ~~~~~~l~g~~gs~ka~~--~a~l---~~------~~~~p~lvv~~~~~~A~~l~~~l~~~~ 63 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATL--VAEI---AE------RHAGPVVLIAPDMQNALRLHDEISQFT 63 (483)
T ss_dssp TTCEEEEECCCTTHHHHH--HHHH---HH------HSSSCEEEEESSHHHHHHHHHHHHHTC
T ss_pred CCCeEEEeCCCchHHHHH--HHHH---HH------HhCCCEEEEeCCHHHHHHHHHHHHhhC
Confidence 456789999999999974 2222 11 124468999999999999999999875
No 162
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.32 E-value=0.64 Score=47.50 Aligned_cols=16 Identities=44% Similarity=0.526 Sum_probs=14.6
Q ss_pred CcEEEEcCCCchHHHH
Q psy16633 56 KDVLVRARTGSGKTGA 71 (540)
Q Consensus 56 kd~li~a~TGsGKT~a 71 (540)
+.+|+.||+|+|||+.
T Consensus 216 rGvLL~GPPGtGKTll 231 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLL 231 (437)
T ss_dssp CEEEEESCTTSSHHHH
T ss_pred CeEEEECCCCCcHHHH
Confidence 7899999999999974
No 163
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=88.26 E-value=1.2 Score=49.75 Aligned_cols=25 Identities=28% Similarity=0.547 Sum_probs=17.9
Q ss_pred HHHHHHhcC--CcEEEEcCCCchHHHH
Q psy16633 47 RAIPLILQN--KDVLVRARTGSGKTGA 71 (540)
Q Consensus 47 ~ai~~il~g--kd~li~a~TGsGKT~a 71 (540)
..+..+.++ .++++.||+|+|||..
T Consensus 181 ~l~~~l~~~~~~~vlL~G~pG~GKT~l 207 (854)
T 1qvr_A 181 RVIQILLRRTKNNPVLIGEPGVGKTAI 207 (854)
T ss_dssp HHHHHHHCSSCCCCEEEECTTSCHHHH
T ss_pred HHHHHHhcCCCCceEEEcCCCCCHHHH
Confidence 344444443 4799999999999974
No 164
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=87.72 E-value=1.9 Score=44.63 Aligned_cols=16 Identities=38% Similarity=0.515 Sum_probs=14.3
Q ss_pred CcEEEEcCCCchHHHH
Q psy16633 56 KDVLVRARTGSGKTGA 71 (540)
Q Consensus 56 kd~li~a~TGsGKT~a 71 (540)
+.+++.+|+|+|||..
T Consensus 50 ~gvLL~GppGtGKT~L 65 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLL 65 (476)
T ss_dssp SEEEEECCTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 5699999999999974
No 165
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=87.54 E-value=0.85 Score=46.89 Aligned_cols=15 Identities=27% Similarity=0.510 Sum_probs=13.6
Q ss_pred cEEEEcCCCchHHHH
Q psy16633 57 DVLVRARTGSGKTGA 71 (540)
Q Consensus 57 d~li~a~TGsGKT~a 71 (540)
.+++.||+|+|||..
T Consensus 52 ~vLL~GppGtGKTtl 66 (447)
T 3pvs_A 52 SMILWGPPGTGKTTL 66 (447)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCcHHHH
Confidence 699999999999974
No 166
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=87.47 E-value=1.3 Score=51.12 Aligned_cols=61 Identities=15% Similarity=0.129 Sum_probs=55.2
Q ss_pred ccCCcEEEEecChhhHHHHHHHHHh---CCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCC
Q psy16633 264 LVQGKTIIFVNTVDKCYKLKLYLEQ---FKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324 (540)
Q Consensus 264 ~~~~k~IIF~~s~~~~~~l~~~L~~---~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~ 324 (540)
..+.++||.+|++.-|..++..+.+ .++.+..+||+.+..+|......+..|..+|+|+|.
T Consensus 119 ~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp 182 (1104)
T 4ddu_A 119 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFST 182 (1104)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEH
T ss_pred hcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECH
Confidence 3466899999999999999999998 467899999999998888899999999999999997
No 167
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=87.42 E-value=0.41 Score=40.64 Aligned_cols=21 Identities=14% Similarity=0.139 Sum_probs=17.2
Q ss_pred HHhcCCcEEEEcCCCchHHHH
Q psy16633 51 LILQNKDVLVRARTGSGKTGA 71 (540)
Q Consensus 51 ~il~gkd~li~a~TGsGKT~a 71 (540)
.+..+.++++.+++|+|||..
T Consensus 23 ~~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 23 AAKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HHTCSSCEEEEEETTCCHHHH
T ss_pred HhCCCCcEEEECCCCccHHHH
Confidence 344567899999999999964
No 168
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=87.41 E-value=19 Score=34.74 Aligned_cols=51 Identities=16% Similarity=0.167 Sum_probs=28.6
Q ss_pred hHHHHHHHhcCcCCccCCccEEEEcCcccccc---CCcHHHHHHHHHhCCcccceeeEe
Q psy16633 151 PARALAHLKAKTLDLKSSLEIVIIDEADLVFS---FGYEDDMKAVLKFLPKLYQAILAS 206 (540)
Q Consensus 151 p~~l~~~l~~~~~~~~~~l~~lViDEah~l~~---~~~~~~l~~i~~~l~~~~q~il~S 206 (540)
...+++.+..... .--+|||||+|.+.. ..+...+..+....+ ...+++.+
T Consensus 124 ~~~l~~~l~~~~~----~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~~g 177 (357)
T 2fna_A 124 FANLLESFEQASK----DNVIIVLDEAQELVKLRGVNLLPALAYAYDNLK-RIKFIMSG 177 (357)
T ss_dssp HHHHHHHHHHTCS----SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCT-TEEEEEEE
T ss_pred HHHHHHHHHhcCC----CCeEEEEECHHHhhccCchhHHHHHHHHHHcCC-CeEEEEEc
Confidence 4455555544211 233799999998764 356566666655543 33444433
No 169
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=87.37 E-value=2 Score=45.16 Aligned_cols=60 Identities=13% Similarity=0.146 Sum_probs=56.3
Q ss_pred CCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCC
Q psy16633 266 QGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE 325 (540)
Q Consensus 266 ~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~ 325 (540)
.+++||.++++.-+......|.+.|+.+..+|++.+..++..+...+..|..+|+++|++
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe 124 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPE 124 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHH
Confidence 578999999999999999999999999999999999999999999999999999999984
No 170
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=87.33 E-value=0.47 Score=40.32 Aligned_cols=20 Identities=15% Similarity=0.228 Sum_probs=16.7
Q ss_pred hcCCcEEEEcCCCchHHHHH
Q psy16633 53 LQNKDVLVRARTGSGKTGAF 72 (540)
Q Consensus 53 l~gkd~li~a~TGsGKT~a~ 72 (540)
..+.++++.+++|+|||..+
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 45678999999999999743
No 171
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=87.14 E-value=1.1 Score=46.69 Aligned_cols=17 Identities=29% Similarity=0.470 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCchHHHH
Q psy16633 55 NKDVLVRARTGSGKTGA 71 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a 71 (540)
.+.+++.||+|+|||..
T Consensus 238 ~~~vLL~GppGtGKT~l 254 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLI 254 (489)
T ss_dssp CCEEEEECSTTSSHHHH
T ss_pred CCcEEEECcCCCCHHHH
Confidence 35799999999999974
No 172
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=87.09 E-value=2.2 Score=38.60 Aligned_cols=55 Identities=11% Similarity=0.265 Sum_probs=45.2
Q ss_pred CcEEEEecChhhHHHHHHHHHhC-----CCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCC
Q psy16633 267 GKTIIFVNTVDKCYKLKLYLEQF-----KISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324 (540)
Q Consensus 267 ~k~IIF~~s~~~~~~l~~~L~~~-----~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~ 324 (540)
.++||.|+++.-+..++..++++ ++.+..++|+.+...+.. .+..+..+|+|+|.
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~~i~v~T~ 142 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTP 142 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH---HHHHSCCSEEEECH
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHH---HHhcCCCCEEEeCH
Confidence 48999999999999988887775 788999999988766543 34557789999997
No 173
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.88 E-value=3.9 Score=41.53 Aligned_cols=17 Identities=35% Similarity=0.485 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCchHHHH
Q psy16633 55 NKDVLVRARTGSGKTGA 71 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a 71 (540)
.+.+|+.||+|+|||+.
T Consensus 206 prGiLL~GPPGtGKT~l 222 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTML 222 (428)
T ss_dssp CCEEEEESCTTTTHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 36799999999999974
No 174
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.82 E-value=1.5 Score=42.19 Aligned_cols=39 Identities=21% Similarity=0.313 Sum_probs=24.0
Q ss_pred CCccEEEEcCccccccCCcHHHHHHHHHhCCcccceeeEe
Q psy16633 167 SSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206 (540)
Q Consensus 167 ~~l~~lViDEah~l~~~~~~~~l~~i~~~l~~~~q~il~S 206 (540)
..-.++||||+|.+.... ...+..++...+....+++.|
T Consensus 106 ~~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 106 GKHKIVILDEADSMTAGA-QQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp TCCEEEEEESGGGSCHHH-HHTTHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEECcccCCHHH-HHHHHHHHhccCCCceEEEEe
Confidence 346799999999775422 233445555555555666554
No 175
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.29 E-value=1.4 Score=44.79 Aligned_cols=17 Identities=35% Similarity=0.460 Sum_probs=14.9
Q ss_pred CCcEEEEcCCCchHHHH
Q psy16633 55 NKDVLVRARTGSGKTGA 71 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a 71 (540)
.+.+|+.+|+|+|||+.
T Consensus 216 prGvLLyGPPGTGKTlL 232 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLL 232 (437)
T ss_dssp CSEEEEESSTTTTHHHH
T ss_pred CCCCceECCCCchHHHH
Confidence 37799999999999973
No 176
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=86.22 E-value=1.9 Score=45.96 Aligned_cols=61 Identities=16% Similarity=0.186 Sum_probs=55.5
Q ss_pred cCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHH--hcCCccEEEeCCC
Q psy16633 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQF--NQGLYDVIIASDE 325 (540)
Q Consensus 265 ~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F--~~g~~~iLIaT~~ 325 (540)
..+.+||.+|++.-+......|.+.|+.+..++|+++..++..+...+ ..+..+|+++|++
T Consensus 83 ~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe 145 (591)
T 2v1x_A 83 SDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPE 145 (591)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHH
T ss_pred cCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChh
Confidence 357999999999999999999999999999999999999999888888 5789999999984
No 177
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=85.61 E-value=3.9 Score=38.04 Aligned_cols=55 Identities=13% Similarity=0.233 Sum_probs=43.3
Q ss_pred CCcEEEEecChhhHHHHHHHHHhC----CCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCC
Q psy16633 266 QGKTIIFVNTVDKCYKLKLYLEQF----KISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324 (540)
Q Consensus 266 ~~k~IIF~~s~~~~~~l~~~L~~~----~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~ 324 (540)
+.++||.++++.-+..++..++++ ++.+..++|+.+...+...+ .+..+|+|+|.
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp 169 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATP 169 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECH
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECH
Confidence 457999999999988888777664 78899999998866544332 35689999997
No 178
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=85.42 E-value=2.9 Score=45.99 Aligned_cols=17 Identities=29% Similarity=0.507 Sum_probs=14.9
Q ss_pred CCcEEEEcCCCchHHHH
Q psy16633 55 NKDVLVRARTGSGKTGA 71 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a 71 (540)
+.++++.||+|+|||..
T Consensus 207 ~~~vlL~G~~GtGKT~l 223 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAI 223 (758)
T ss_dssp SCEEEEECCTTSSHHHH
T ss_pred CCCeEEEcCCCCCHHHH
Confidence 45799999999999974
No 179
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=85.19 E-value=0.98 Score=41.67 Aligned_cols=19 Identities=16% Similarity=0.024 Sum_probs=15.8
Q ss_pred cCCcEEEEcCCCchHHHHH
Q psy16633 54 QNKDVLVRARTGSGKTGAF 72 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~a~ 72 (540)
.|.-+.+.+|+|+|||...
T Consensus 23 ~G~~~~i~G~~GsGKTtl~ 41 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQIC 41 (243)
T ss_dssp TTSEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCcHHHHH
Confidence 4567999999999999743
No 180
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=84.41 E-value=1 Score=46.09 Aligned_cols=44 Identities=16% Similarity=0.338 Sum_probs=33.0
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHH
Q psy16633 54 QNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCN 105 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~ 105 (540)
...+++|.|+||||||.. +-+++..++. .+..++|+=|.-++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~-~~~li~~~~~-------~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVL-LRELAYTGLL-------RGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHH-HHHHHHHHHH-------TTCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHH-HHHHHHHHHH-------CCCcEEEEeCCCchhH
Confidence 346899999999999985 4455555543 4678899999888753
No 181
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=83.95 E-value=3.4 Score=45.52 Aligned_cols=15 Identities=33% Similarity=0.430 Sum_probs=13.5
Q ss_pred cEEEEcCCCchHHHH
Q psy16633 57 DVLVRARTGSGKTGA 71 (540)
Q Consensus 57 d~li~a~TGsGKT~a 71 (540)
.+++.||||+|||..
T Consensus 523 ~~Ll~Gp~GtGKT~l 537 (758)
T 3pxi_A 523 SFIFLGPTGVGKTEL 537 (758)
T ss_dssp EEEEESCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 499999999999974
No 182
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=83.61 E-value=1 Score=54.37 Aligned_cols=46 Identities=13% Similarity=0.114 Sum_probs=31.6
Q ss_pred HHHHhc------CCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHH
Q psy16633 49 IPLILQ------NKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKE 102 (540)
Q Consensus 49 i~~il~------gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~ 102 (540)
+..++. |+.+++.+|+|+|||..+.-.+.+.. ..+.+++++...-.
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~--------~~G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ--------REGKTCAFIDAEHA 1466 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHH--------TTTCCEEEECTTSC
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHH--------HcCCcEEEEEcccc
Confidence 555665 67899999999999985443333222 35778888876543
No 183
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=83.28 E-value=1.8 Score=39.96 Aligned_cols=45 Identities=7% Similarity=0.052 Sum_probs=27.2
Q ss_pred CCccEEEEcCcccccc-----CCcHHHHHHHHHhCCcccceeeEeeeccH
Q psy16633 167 SSLEIVIIDEADLVFS-----FGYEDDMKAVLKFLPKLYQAILASATLSE 211 (540)
Q Consensus 167 ~~l~~lViDEah~l~~-----~~~~~~l~~i~~~l~~~~q~il~SATl~~ 211 (540)
.+.+++|+||.-..++ ......+..++..+...-.+++++.-...
T Consensus 134 ~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~ 183 (251)
T 2ehv_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPD 183 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC-
T ss_pred hCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 4577899999987765 34445566666665443345555544433
No 184
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=83.26 E-value=1.9 Score=45.56 Aligned_cols=17 Identities=24% Similarity=0.282 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCchHHHH
Q psy16633 55 NKDVLVRARTGSGKTGA 71 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a 71 (540)
|..+++.+|+|+|||..
T Consensus 108 g~~vll~Gp~GtGKTtl 124 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSL 124 (543)
T ss_dssp SCEEEEESSSSSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 67899999999999973
No 185
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=83.07 E-value=1.6 Score=45.60 Aligned_cols=39 Identities=23% Similarity=0.072 Sum_probs=26.1
Q ss_pred HHHHHHCCCCCChHHHHHHHHH-HhcCCcEEEEcCCCchHHH
Q psy16633 30 LQAIAKLGWLEPTLIQERAIPL-ILQNKDVLVRARTGSGKTG 70 (540)
Q Consensus 30 ~~~l~~~g~~~pt~~Q~~ai~~-il~gkd~li~a~TGsGKT~ 70 (540)
+..+.++|. +++.+..-+.. +..|..+++.||||||||.
T Consensus 236 ~~~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTT 275 (511)
T 2oap_1 236 PIDLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTT 275 (511)
T ss_dssp HHHHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHH
T ss_pred hhhHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHH
Confidence 455666674 23333334433 4568889999999999997
No 186
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=82.64 E-value=7.9 Score=34.32 Aligned_cols=71 Identities=23% Similarity=0.294 Sum_probs=49.4
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchh----hhhCCCCEEEEChHHHHHHHhcCcCCcc
Q psy16633 91 ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEP----LLVERPDIVVATPARALAHLKAKTLDLK 166 (540)
Q Consensus 91 ~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~----~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~ 166 (540)
+.++||.++++.-+..+.+.+... ++.+..+.|+.....+.. ...+...|+|+|. . ...++++
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~------g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----~-~~~Gldi- 120 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK------GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD-----V-ASKGLDF- 120 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH------TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH-----H-HHTTCCC-
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc------CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC-----c-hhcCCCc-
Confidence 457999999999999988888765 356677888765444332 2235789999992 2 2334555
Q ss_pred CCccEEEE
Q psy16633 167 SSLEIVII 174 (540)
Q Consensus 167 ~~l~~lVi 174 (540)
..++++|.
T Consensus 121 ~~v~~VI~ 128 (191)
T 2p6n_A 121 PAIQHVIN 128 (191)
T ss_dssp CCCSEEEE
T ss_pred ccCCEEEE
Confidence 67777776
No 187
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=82.48 E-value=2.3 Score=38.54 Aligned_cols=50 Identities=14% Similarity=0.056 Sum_probs=32.9
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHhcC----CcEEEEcCCCchHHHHHHHHHHHH
Q psy16633 27 CIPLQAIAKLGWLEPTLIQERAIPLILQN----KDVLVRARTGSGKTGAFAIPMIQK 79 (540)
Q Consensus 27 ~~i~~~l~~~g~~~pt~~Q~~ai~~il~g----kd~li~a~TGsGKT~a~~ipil~~ 79 (540)
..|.+.|+-.|+ .+..+ -.++...+++ +.+++.+|.|+|||.. ...++..
T Consensus 28 ~~I~~~l~yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~-a~ala~~ 81 (212)
T 1tue_A 28 RPIVQFLRYQQI-EFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYF-GMSFIHF 81 (212)
T ss_dssp HHHHHHHHHTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHH-HHHHHHH
T ss_pred HHHHHHHHHcCc-CHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHH-HHHHHHH
Confidence 456666666665 56666 4556556655 2499999999999974 3444443
No 188
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=82.35 E-value=0.96 Score=46.03 Aligned_cols=35 Identities=26% Similarity=0.384 Sum_probs=22.1
Q ss_pred HHHCCCCCChHHHHHHHHHHhc--CCcEEEEcCCCchHHH
Q psy16633 33 IAKLGWLEPTLIQERAIPLILQ--NKDVLVRARTGSGKTG 70 (540)
Q Consensus 33 l~~~g~~~pt~~Q~~ai~~il~--gkd~li~a~TGsGKT~ 70 (540)
+.++|+. +-+..++..++. |.-+++.+|||||||.
T Consensus 146 l~~Lg~~---~~~~~~L~~l~~~~ggii~I~GpnGSGKTT 182 (418)
T 1p9r_A 146 LHSLGMT---AHNHDNFRRLIKRPHGIILVTGPTGSGKST 182 (418)
T ss_dssp GGGSCCC---HHHHHHHHHHHTSSSEEEEEECSTTSCHHH
T ss_pred HHHcCCC---HHHHHHHHHHHHhcCCeEEEECCCCCCHHH
Confidence 4445552 234445544443 4458999999999997
No 189
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=82.34 E-value=5.4 Score=34.22 Aligned_cols=74 Identities=20% Similarity=0.292 Sum_probs=50.7
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchh----hhhCCCCEEEEChHHHHHHHhcCcCCc
Q psy16633 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEP----LLVERPDIVVATPARALAHLKAKTLDL 165 (540)
Q Consensus 90 ~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~----~l~~~~~Ivv~Tp~~l~~~l~~~~~~~ 165 (540)
.+.++||.++++.-+..+.+.+... ++.+..+.|+........ ...+..+|+|+|.- -..++++
T Consensus 34 ~~~~~lVF~~~~~~~~~l~~~L~~~------~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~------~~~Gld~ 101 (163)
T 2hjv_A 34 NPDSCIIFCRTKEHVNQLTDELDDL------GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDV------AARGIDI 101 (163)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHT------TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGG------GTTTCCC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHc------CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCh------hhcCCch
Confidence 4568999999999999988888765 456677777765443332 22356789999922 2344565
Q ss_pred cCCccEEEEcC
Q psy16633 166 KSSLEIVIIDE 176 (540)
Q Consensus 166 ~~~l~~lViDE 176 (540)
..++++|.-.
T Consensus 102 -~~~~~Vi~~~ 111 (163)
T 2hjv_A 102 -ENISLVINYD 111 (163)
T ss_dssp -SCCSEEEESS
T ss_pred -hcCCEEEEeC
Confidence 6778777633
No 190
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=82.24 E-value=1.9 Score=44.99 Aligned_cols=50 Identities=8% Similarity=0.044 Sum_probs=29.5
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHH
Q psy16633 54 QNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNI 111 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l 111 (540)
.|.-++|.|++|+|||. +++-++..+.. ..+..++++.--- -..|+...+
T Consensus 241 ~G~l~li~G~pG~GKT~-lal~~a~~~a~------~~g~~vl~~s~E~-s~~~l~~r~ 290 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMST-FVRQQALQWGT------AMGKKVGLAMLEE-SVEETAEDL 290 (503)
T ss_dssp TTCEEEEEESSCHHHHH-HHHHHHHHHTT------TSCCCEEEEESSS-CHHHHHHHH
T ss_pred CCeEEEEeecCCCCchH-HHHHHHHHHHH------hcCCcEEEEeccC-CHHHHHHHH
Confidence 35569999999999997 44444444321 1256778775422 233444443
No 191
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=80.30 E-value=5 Score=39.62 Aligned_cols=56 Identities=13% Similarity=0.285 Sum_probs=45.9
Q ss_pred CCcEEEEecChhhHHHHHHHHHhC-----CCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCC
Q psy16633 266 QGKTIIFVNTVDKCYKLKLYLEQF-----KISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324 (540)
Q Consensus 266 ~~k~IIF~~s~~~~~~l~~~L~~~-----~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~ 324 (540)
..++||.|+++.-+..++..+.++ ++.+..++|+.+....... +..+..+|+|+|.
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~iiv~T~ 136 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTP 136 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHH---HHHSCCSEEEECH
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHH---HhcCCCCEEEECH
Confidence 458999999999999988888775 7889999999887665443 4557789999997
No 192
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=79.68 E-value=11 Score=36.02 Aligned_cols=17 Identities=29% Similarity=0.300 Sum_probs=13.4
Q ss_pred CCcEEEEcCCCchHHHH
Q psy16633 55 NKDVLVRARTGSGKTGA 71 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a 71 (540)
++-+.+.+++|+|||..
T Consensus 98 ~~~i~i~g~~G~GKTT~ 114 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTT 114 (295)
T ss_dssp SEEEEEECCTTTTHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 34567889999999964
No 193
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=79.26 E-value=6.9 Score=35.31 Aligned_cols=72 Identities=17% Similarity=0.302 Sum_probs=50.3
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhh----hhCCCCEEEEChHHHHHHHhcCcCCc
Q psy16633 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL----LVERPDIVVATPARALAHLKAKTLDL 165 (540)
Q Consensus 90 ~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~----l~~~~~Ivv~Tp~~l~~~l~~~~~~~ 165 (540)
.+.++||.++++.-+..+++.+... ++.+..+.|+.....+... ..+..+|+|+|.- -..++++
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~------~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~------~~~Gidi 97 (212)
T 3eaq_A 30 SPDRAMVFTRTKAETEEIAQGLLRL------GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDV------AARGLDI 97 (212)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHH------TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTT------TTCSSSC
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHc------CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecCh------hhcCCCC
Confidence 4678999999999999888888765 4566778887665444332 2356889999922 2344565
Q ss_pred cCCccEEEE
Q psy16633 166 KSSLEIVII 174 (540)
Q Consensus 166 ~~~l~~lVi 174 (540)
..++++|.
T Consensus 98 -~~v~~Vi~ 105 (212)
T 3eaq_A 98 -PQVDLVVH 105 (212)
T ss_dssp -CCBSEEEE
T ss_pred -ccCcEEEE
Confidence 67777763
No 194
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=79.06 E-value=3.1 Score=49.66 Aligned_cols=97 Identities=14% Similarity=0.260 Sum_probs=58.6
Q ss_pred HHHHHhc------CCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCC
Q psy16633 48 AIPLILQ------NKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRD 121 (540)
Q Consensus 48 ai~~il~------gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~ 121 (540)
.+..++. |+-+.|.+|.|||||.. .++++.... ..+..++++.+--+|.... ++.++...
T Consensus 1418 ~lD~~lg~gG~prg~~iei~g~~~sGkttl-~~~~~a~~~-------~~g~~~~~i~~e~~~~~~~---~~~~Gv~~--- 1483 (1706)
T 3cmw_A 1418 SLDIALGAGGLPMGRIVEIYGPESSGKTTL-TLQVIAAAQ-------REGKTCAFIDAEHALDPIY---ARKLGVDI--- 1483 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHH-HHHHHHHHH-------HTTCCEEEECTTSCCCHHH---HHHTTCCG---
T ss_pred HHHHhcCCCCCCCCCEEEEEcCCCCCHHHH-HHHHHHHHH-------hcCCeEEEEecCCCCCHHH---HHHcCCCH---
Confidence 4555665 35699999999999985 444444432 3578888888876665443 44443322
Q ss_pred ceEEEeecCcccccchhhhhCCCCEEEEChH---HHHHHHhcCcCCccCCccEEEEcCcccccc
Q psy16633 122 VKCVDISEQVDVSVQEPLLVERPDIVVATPA---RALAHLKAKTLDLKSSLEIVIIDEADLVFS 182 (540)
Q Consensus 122 i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~---~l~~~l~~~~~~~~~~l~~lViDEah~l~~ 182 (540)
. +++++-|+ ..+..+..-.-. ..+++||||.+-.+..
T Consensus 1484 -~---------------------~l~~~~p~~~e~~l~~~~~~~~s--~~~~~vvvDsv~al~~ 1523 (1706)
T 3cmw_A 1484 -D---------------------NLLCSQPDTGEQALEICDALARS--GAVDVIVVDSVAALTP 1523 (1706)
T ss_dssp -G---------------------GCEEECCSSHHHHHHHHHHHHHH--TCCSEEEESCSTTCCC
T ss_pred -H---------------------HeEEeCCCcHHHHHHHHHHHHHc--CCCCEEEEccHHhCCc
Confidence 1 25566553 333333221111 4578899999987664
No 195
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=78.79 E-value=8.7 Score=32.90 Aligned_cols=73 Identities=14% Similarity=0.248 Sum_probs=49.7
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhh----hhCCCCEEEEChHHHHHHHhcCcCCc
Q psy16633 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL----LVERPDIVVATPARALAHLKAKTLDL 165 (540)
Q Consensus 90 ~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~----l~~~~~Ivv~Tp~~l~~~l~~~~~~~ 165 (540)
.+.++||.++++.-+..+.+.+... ++.+..+.|+.....+... ..+...|+|+|.- -..++++
T Consensus 29 ~~~~~lVF~~~~~~~~~l~~~L~~~------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~------~~~G~d~ 96 (165)
T 1fuk_A 29 SVTQAVIFCNTRRKVEELTTKLRND------KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDL------LARGIDV 96 (165)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHHT------TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGG------GTTTCCC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc------CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCh------hhcCCCc
Confidence 4678999999999998888888764 4566777777654443322 2356789999932 2344555
Q ss_pred cCCccEEEEc
Q psy16633 166 KSSLEIVIID 175 (540)
Q Consensus 166 ~~~l~~lViD 175 (540)
..++++|.-
T Consensus 97 -~~~~~Vi~~ 105 (165)
T 1fuk_A 97 -QQVSLVINY 105 (165)
T ss_dssp -CSCSEEEES
T ss_pred -ccCCEEEEe
Confidence 677777663
No 196
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=78.42 E-value=1.3 Score=41.94 Aligned_cols=19 Identities=37% Similarity=0.373 Sum_probs=16.3
Q ss_pred HhcCCcEEEEcCCCchHHH
Q psy16633 52 ILQNKDVLVRARTGSGKTG 70 (540)
Q Consensus 52 il~gkd~li~a~TGsGKT~ 70 (540)
+..|.-+++.+|||||||.
T Consensus 22 i~~g~~v~i~Gp~GsGKST 40 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKST 40 (261)
T ss_dssp GCSSEEEEEECSTTCSHHH
T ss_pred hCCCCEEEEECCCCccHHH
Confidence 4467779999999999997
No 197
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=78.02 E-value=6.5 Score=34.15 Aligned_cols=72 Identities=13% Similarity=0.213 Sum_probs=49.6
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhh----hhCCCCEEEEChHHHHHHHhcCcCCc
Q psy16633 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL----LVERPDIVVATPARALAHLKAKTLDL 165 (540)
Q Consensus 90 ~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~----l~~~~~Ivv~Tp~~l~~~l~~~~~~~ 165 (540)
.+.++||.++++..+..+++.+... ++.+..+.|+.....+... ..+..+|+|+|.- -..++++
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~~------~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~------~~~Gid~ 100 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQD------GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNV------CARGIDV 100 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHTT------TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCS------CCTTTCC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc------CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecc------hhcCCCc
Confidence 4678999999999998888877754 4566777777654443322 2357889999922 2334555
Q ss_pred cCCccEEEE
Q psy16633 166 KSSLEIVII 174 (540)
Q Consensus 166 ~~~l~~lVi 174 (540)
..++++|.
T Consensus 101 -~~~~~Vi~ 108 (175)
T 2rb4_A 101 -KQVTIVVN 108 (175)
T ss_dssp -TTEEEEEE
T ss_pred -ccCCEEEE
Confidence 67777774
No 198
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=77.58 E-value=1.5 Score=43.43 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=19.9
Q ss_pred HHHHHhcCCc--EEEEcCCCchHHHHH
Q psy16633 48 AIPLILQNKD--VLVRARTGSGKTGAF 72 (540)
Q Consensus 48 ai~~il~gkd--~li~a~TGsGKT~a~ 72 (540)
.+..+++|.+ +++-+.||||||.+.
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 3555677876 889999999999754
No 199
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=77.51 E-value=1.9 Score=43.26 Aligned_cols=42 Identities=19% Similarity=0.453 Sum_probs=29.1
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHH
Q psy16633 54 QNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKEL 103 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~L 103 (540)
.+.+++|.++||||||...-. ++..+. ..+.+++++=|..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~-~~~~~~-------~~~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKM-LLLREY-------MQGSRVIIIDPEREY 75 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHH-HHHHHH-------TTTCCEEEEESSCCS
T ss_pred ccCceEEEcCCCCCHHHHHHH-HHHHHH-------HCCCEEEEEeCCcCH
Confidence 467899999999999974333 333332 246778888887653
No 200
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=77.21 E-value=4.6 Score=44.50 Aligned_cols=16 Identities=31% Similarity=0.517 Sum_probs=14.4
Q ss_pred CcEEEEcCCCchHHHH
Q psy16633 56 KDVLVRARTGSGKTGA 71 (540)
Q Consensus 56 kd~li~a~TGsGKT~a 71 (540)
+.+|+.+|+|+|||+.
T Consensus 239 ~GILL~GPPGTGKT~L 254 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLI 254 (806)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 5799999999999974
No 201
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=76.48 E-value=1.8 Score=42.29 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=19.8
Q ss_pred HHHHHhcCCc--EEEEcCCCchHHHHH
Q psy16633 48 AIPLILQNKD--VLVRARTGSGKTGAF 72 (540)
Q Consensus 48 ai~~il~gkd--~li~a~TGsGKT~a~ 72 (540)
.+..+++|.+ +++-++||||||.+.
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceEe
Confidence 3455677877 889999999999764
No 202
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=76.31 E-value=3.6 Score=37.44 Aligned_cols=56 Identities=9% Similarity=0.137 Sum_probs=39.4
Q ss_pred cCCcEEEEecChhhHHHHHHHHHhC---CCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCC
Q psy16633 265 VQGKTIIFVNTVDKCYKLKLYLEQF---KISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324 (540)
Q Consensus 265 ~~~k~IIF~~s~~~~~~l~~~L~~~---~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~ 324 (540)
.+.++||.++++.-+..++..+.++ ++.+..++|+.+...+... +. ...+|+|+|.
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~iiv~Tp 151 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---IS-KGVDIIIATP 151 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HH-SCCSEEEECH
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hc-CCCCEEEECH
Confidence 3567999999999999999988875 6788889988765544332 23 3489999997
No 203
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=75.92 E-value=1.6 Score=43.35 Aligned_cols=19 Identities=37% Similarity=0.557 Sum_probs=16.7
Q ss_pred HhcCCcEEEEcCCCchHHH
Q psy16633 52 ILQNKDVLVRARTGSGKTG 70 (540)
Q Consensus 52 il~gkd~li~a~TGsGKT~ 70 (540)
+..|+.+++.+|||||||.
T Consensus 172 i~~G~~i~ivG~sGsGKST 190 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTT 190 (361)
T ss_dssp HHTTCCEEEEESSSSCHHH
T ss_pred HhcCCEEEEECCCCCCHHH
Confidence 3468899999999999997
No 204
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=75.28 E-value=9.1 Score=33.16 Aligned_cols=73 Identities=15% Similarity=0.186 Sum_probs=50.0
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchh----hhhCCCCEEEEChHHHHHHHhcCcCCc
Q psy16633 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEP----LLVERPDIVVATPARALAHLKAKTLDL 165 (540)
Q Consensus 90 ~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~----~l~~~~~Ivv~Tp~~l~~~l~~~~~~~ 165 (540)
.+.++||.|+++.-+..+++.+... ++.+..+.|+........ ...+...|+|+|.- -..++++
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~------~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~------~~~Gldi 97 (172)
T 1t5i_A 30 EFNQVVIFVKSVQRCIALAQLLVEQ------NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL------FGRGMDI 97 (172)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHT------TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC------CSTTCCG
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc------CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCc------hhcCcch
Confidence 4568999999999999888888765 456677777765443332 23357899999932 2334555
Q ss_pred cCCccEEEEc
Q psy16633 166 KSSLEIVIID 175 (540)
Q Consensus 166 ~~~l~~lViD 175 (540)
..++++|.-
T Consensus 98 -~~~~~Vi~~ 106 (172)
T 1t5i_A 98 -ERVNIAFNY 106 (172)
T ss_dssp -GGCSEEEES
T ss_pred -hhCCEEEEE
Confidence 667777753
No 205
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=75.10 E-value=1.8 Score=42.60 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=19.3
Q ss_pred HHHHHhcCCc--EEEEcCCCchHHHHH
Q psy16633 48 AIPLILQNKD--VLVRARTGSGKTGAF 72 (540)
Q Consensus 48 ai~~il~gkd--~li~a~TGsGKT~a~ 72 (540)
.+..+++|.+ +++-++||||||.+.
T Consensus 86 lv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 86 LVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 3455567876 789999999999763
No 206
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=74.99 E-value=2 Score=43.39 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=19.8
Q ss_pred HHHHHhcCCc--EEEEcCCCchHHHHH
Q psy16633 48 AIPLILQNKD--VLVRARTGSGKTGAF 72 (540)
Q Consensus 48 ai~~il~gkd--~li~a~TGsGKT~a~ 72 (540)
.+..++.|.+ +++-|.||||||.+.
T Consensus 146 lV~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHHhcCCceeEEeecCCCCCCCeEe
Confidence 4455677876 789999999999764
No 207
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=74.98 E-value=3.7 Score=42.68 Aligned_cols=43 Identities=14% Similarity=0.064 Sum_probs=28.3
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHH
Q psy16633 28 IPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGA 71 (540)
Q Consensus 28 ~i~~~l~~~g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a 71 (540)
.+...+... +.--...=..++-.+..|.++++.||+|+|||..
T Consensus 15 ~l~~~l~~~-ivGq~~~i~~l~~al~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 15 RLSSSLEKG-LYERSHAIRLCLLAALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp HHHHHHHTT-CSSCHHHHHHHHHHHHHTCEEEEECCSSSSHHHH
T ss_pred HHHHHHHhh-hHHHHHHHHHHHHHHhcCCeeEeecCchHHHHHH
Confidence 344444433 3233334445666667789999999999999973
No 208
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=74.97 E-value=2.2 Score=43.08 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=20.7
Q ss_pred HHHHHhcCCc--EEEEcCCCchHHHHH
Q psy16633 48 AIPLILQNKD--VLVRARTGSGKTGAF 72 (540)
Q Consensus 48 ai~~il~gkd--~li~a~TGsGKT~a~ 72 (540)
.+..++.|.+ +++-|+||||||.+.
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 5666778887 789999999999764
No 209
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=74.92 E-value=2.6 Score=38.81 Aligned_cols=17 Identities=41% Similarity=0.560 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCchHHHH
Q psy16633 55 NKDVLVRARTGSGKTGA 71 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a 71 (540)
|.-+++.|++|+|||..
T Consensus 30 G~l~~i~G~pG~GKT~l 46 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTF 46 (251)
T ss_dssp TCEEEEECCTTSSHHHH
T ss_pred CeEEEEEeCCCCCHHHH
Confidence 56699999999999974
No 210
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=74.67 E-value=2.2 Score=42.21 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=19.1
Q ss_pred HHHHhcCCc--EEEEcCCCchHHHHH
Q psy16633 49 IPLILQNKD--VLVRARTGSGKTGAF 72 (540)
Q Consensus 49 i~~il~gkd--~li~a~TGsGKT~a~ 72 (540)
+..+++|.+ +++-+.||||||.+.
T Consensus 82 v~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 82 IDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCceeEEeecCCCCCCCEEe
Confidence 445677876 889999999999764
No 211
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=74.65 E-value=2.3 Score=39.92 Aligned_cols=18 Identities=33% Similarity=0.455 Sum_probs=15.7
Q ss_pred cCCcEEEEcCCCchHHHH
Q psy16633 54 QNKDVLVRARTGSGKTGA 71 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~a 71 (540)
.+..+++.|++|+|||..
T Consensus 28 ~~~~vll~G~~GtGKt~l 45 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELI 45 (265)
T ss_dssp SCSCEEEECCTTSCHHHH
T ss_pred CCCCEEEECCCCCcHHHH
Confidence 467899999999999974
No 212
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=74.42 E-value=2.2 Score=42.43 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=19.5
Q ss_pred HHHHHhcCCc--EEEEcCCCchHHHHH
Q psy16633 48 AIPLILQNKD--VLVRARTGSGKTGAF 72 (540)
Q Consensus 48 ai~~il~gkd--~li~a~TGsGKT~a~ 72 (540)
.+..++.|.+ +++-|.||||||.+.
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 76 IVTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceEEEeecCCCCCCceEE
Confidence 3445667876 789999999999763
No 213
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=74.40 E-value=2.2 Score=41.77 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=21.1
Q ss_pred HHHHHHhcCCc--EEEEcCCCchHHHHH
Q psy16633 47 RAIPLILQNKD--VLVRARTGSGKTGAF 72 (540)
Q Consensus 47 ~ai~~il~gkd--~li~a~TGsGKT~a~ 72 (540)
..+..+++|.+ +++-++||||||.+.
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 35666788887 789999999999764
No 214
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=74.36 E-value=2.7 Score=41.72 Aligned_cols=17 Identities=47% Similarity=0.524 Sum_probs=14.8
Q ss_pred cCCcEEEEcCCCchHHH
Q psy16633 54 QNKDVLVRARTGSGKTG 70 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~ 70 (540)
.|.-+++.+|||||||.
T Consensus 122 ~~g~i~I~GptGSGKTT 138 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKST 138 (356)
T ss_dssp SSEEEEEECSTTSCHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 45579999999999997
No 215
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=74.36 E-value=5.6 Score=37.85 Aligned_cols=17 Identities=41% Similarity=0.573 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCchHHHH
Q psy16633 55 NKDVLVRARTGSGKTGA 71 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a 71 (540)
+..+++.||+|+|||..
T Consensus 50 ~~~vll~G~~GtGKT~l 66 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEI 66 (310)
T ss_dssp CCCEEEECCTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 56899999999999974
No 216
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=74.33 E-value=2.2 Score=42.07 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=19.4
Q ss_pred HHHHHhcCCc--EEEEcCCCchHHHHH
Q psy16633 48 AIPLILQNKD--VLVRARTGSGKTGAF 72 (540)
Q Consensus 48 ai~~il~gkd--~li~a~TGsGKT~a~ 72 (540)
.+..+++|.+ +++-++||||||.+.
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEee
Confidence 3455667877 789999999999763
No 217
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=74.31 E-value=2 Score=41.92 Aligned_cols=26 Identities=23% Similarity=0.229 Sum_probs=20.0
Q ss_pred HHHHHHHhcCCcEEEEcCCCchHHHH
Q psy16633 46 ERAIPLILQNKDVLVRARTGSGKTGA 71 (540)
Q Consensus 46 ~~ai~~il~gkd~li~a~TGsGKT~a 71 (540)
..+.-.+..++++++.||+|+|||..
T Consensus 37 ~~l~~~l~~~~~vll~G~pGtGKT~l 62 (331)
T 2r44_A 37 NRLLIGICTGGHILLEGVPGLAKTLS 62 (331)
T ss_dssp HHHHHHHHHTCCEEEESCCCHHHHHH
T ss_pred HHHHHHHHcCCeEEEECCCCCcHHHH
Confidence 33444455688999999999999973
No 218
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=74.29 E-value=2.1 Score=42.61 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=19.5
Q ss_pred HHHHHhcCCc--EEEEcCCCchHHHHH
Q psy16633 48 AIPLILQNKD--VLVRARTGSGKTGAF 72 (540)
Q Consensus 48 ai~~il~gkd--~li~a~TGsGKT~a~ 72 (540)
.+..+++|.+ +++-++||||||.+.
T Consensus 93 lv~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 3455677876 789999999999753
No 219
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=74.25 E-value=2.2 Score=42.28 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=19.6
Q ss_pred HHHHHhcCCc--EEEEcCCCchHHHHH
Q psy16633 48 AIPLILQNKD--VLVRARTGSGKTGAF 72 (540)
Q Consensus 48 ai~~il~gkd--~li~a~TGsGKT~a~ 72 (540)
.+..+++|.+ +++-++||||||.+.
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEeCCCCCCceeee
Confidence 3455667876 789999999999754
No 220
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=74.23 E-value=5.6 Score=37.55 Aligned_cols=45 Identities=13% Similarity=0.068 Sum_probs=32.1
Q ss_pred CHHHHHHHHHCCCCCChHHHHHHHHHHhcCC-----cEEEEcCCCchHHHHH
Q psy16633 26 FCIPLQAIAKLGWLEPTLIQERAIPLILQNK-----DVLVRARTGSGKTGAF 72 (540)
Q Consensus 26 ~~~i~~~l~~~g~~~pt~~Q~~ai~~il~gk-----d~li~a~TGsGKT~a~ 72 (540)
..+|.+-|+-.|+. |-.+-. ++...++|+ .+++.||.|+|||..+
T Consensus 72 ~n~i~~~l~~qg~~-~~~~~~-~l~~~l~~~~~~~n~~~l~GppgtGKt~~a 121 (267)
T 1u0j_A 72 SNRIYKILELNGYD-PQYAAS-VFLGWATKKFGKRNTIWLFGPATTGKTNIA 121 (267)
T ss_dssp GCHHHHHHHHTTCC-HHHHHH-HHHHHHTTCSTTCCEEEEECSTTSSHHHHH
T ss_pred hHHHHHHHHHcCCC-HHHHHH-HHHHHHhCCCCCCcEEEEECCCCCCHHHHH
Confidence 45789999999985 443333 345555553 4999999999999743
No 221
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=74.22 E-value=14 Score=32.36 Aligned_cols=72 Identities=24% Similarity=0.319 Sum_probs=42.6
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchh----hhhCCCCEEEEChHHHHHHHhcCcCCc
Q psy16633 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEP----LLVERPDIVVATPARALAHLKAKTLDL 165 (540)
Q Consensus 90 ~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~----~l~~~~~Ivv~Tp~~l~~~l~~~~~~~ 165 (540)
.+.++||.++++.-+..+.+.+... ++.+..+.|+.....+.. ...+...|+|+|.- -..++++
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~------g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~------~~~Gldi 112 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHE------GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAV------AARGLDI 112 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHT------TCCEEEEC--------CHHHHHHHHTSSSEEEEEC------------CC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHc------CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcCh------hhcCCCc
Confidence 5678999999999999888888764 456677777655443332 23457889999922 1233455
Q ss_pred cCCccEEEE
Q psy16633 166 KSSLEIVII 174 (540)
Q Consensus 166 ~~~l~~lVi 174 (540)
..++++|.
T Consensus 113 -~~~~~VI~ 120 (185)
T 2jgn_A 113 -SNVKHVIN 120 (185)
T ss_dssp -CSBSEEEE
T ss_pred -ccCCEEEE
Confidence 66777765
No 222
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=74.20 E-value=2.2 Score=42.27 Aligned_cols=25 Identities=20% Similarity=0.369 Sum_probs=19.9
Q ss_pred HHHHHhcCCc--EEEEcCCCchHHHHH
Q psy16633 48 AIPLILQNKD--VLVRARTGSGKTGAF 72 (540)
Q Consensus 48 ai~~il~gkd--~li~a~TGsGKT~a~ 72 (540)
.+..+++|.+ +++-++||||||.+.
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 4556678887 789999999999764
No 223
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=74.11 E-value=2.2 Score=42.34 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=19.5
Q ss_pred HHHHHhcCCc--EEEEcCCCchHHHHH
Q psy16633 48 AIPLILQNKD--VLVRARTGSGKTGAF 72 (540)
Q Consensus 48 ai~~il~gkd--~li~a~TGsGKT~a~ 72 (540)
.+..+++|.+ +++-++||||||.+.
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceEe
Confidence 3555677877 788999999999753
No 224
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=74.08 E-value=2.2 Score=42.18 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=19.8
Q ss_pred HHHHHhcCCc--EEEEcCCCchHHHHH
Q psy16633 48 AIPLILQNKD--VLVRARTGSGKTGAF 72 (540)
Q Consensus 48 ai~~il~gkd--~li~a~TGsGKT~a~ 72 (540)
.+..+++|.+ +++-++||||||.+.
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEE
Confidence 3455677876 789999999999764
No 225
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=74.07 E-value=2.2 Score=42.27 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=19.0
Q ss_pred HHHHhcCCc--EEEEcCCCchHHHHH
Q psy16633 49 IPLILQNKD--VLVRARTGSGKTGAF 72 (540)
Q Consensus 49 i~~il~gkd--~li~a~TGsGKT~a~ 72 (540)
+..++.|.+ +++-++||||||.+.
T Consensus 73 v~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 73 VDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCcceEEEECCCCCCcceEe
Confidence 445667876 889999999999754
No 226
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=73.82 E-value=2.3 Score=42.31 Aligned_cols=25 Identities=16% Similarity=0.381 Sum_probs=19.6
Q ss_pred HHHHHhcCCc--EEEEcCCCchHHHHH
Q psy16633 48 AIPLILQNKD--VLVRARTGSGKTGAF 72 (540)
Q Consensus 48 ai~~il~gkd--~li~a~TGsGKT~a~ 72 (540)
.+..+++|.+ +++.+.||||||.+.
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 3455678876 789999999999753
No 227
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=73.73 E-value=1.5 Score=38.58 Aligned_cols=18 Identities=17% Similarity=0.311 Sum_probs=15.7
Q ss_pred hcCCcEEEEcCCCchHHH
Q psy16633 53 LQNKDVLVRARTGSGKTG 70 (540)
Q Consensus 53 l~gkd~li~a~TGsGKT~ 70 (540)
..|+-+++.||+|||||.
T Consensus 3 ~~g~~i~i~GpsGsGKST 20 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRH 20 (180)
T ss_dssp CCCCEEEEECCTTSSHHH
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 357779999999999997
No 228
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=73.56 E-value=2.1 Score=42.83 Aligned_cols=18 Identities=39% Similarity=0.434 Sum_probs=15.7
Q ss_pred hcCCcEEEEcCCCchHHH
Q psy16633 53 LQNKDVLVRARTGSGKTG 70 (540)
Q Consensus 53 l~gkd~li~a~TGsGKT~ 70 (540)
..|+.+++.+|||||||.
T Consensus 134 ~~g~~i~ivG~~GsGKTT 151 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKST 151 (372)
T ss_dssp SSSEEEEEECSSSSSHHH
T ss_pred cCCCEEEEECCCCCCHHH
Confidence 456779999999999997
No 229
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=73.50 E-value=2.2 Score=42.35 Aligned_cols=25 Identities=20% Similarity=0.391 Sum_probs=19.7
Q ss_pred HHHHHhcCCc--EEEEcCCCchHHHHH
Q psy16633 48 AIPLILQNKD--VLVRARTGSGKTGAF 72 (540)
Q Consensus 48 ai~~il~gkd--~li~a~TGsGKT~a~ 72 (540)
.+..++.|.+ +++-+.||||||.+.
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 4455677876 789999999999754
No 230
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=73.46 E-value=2 Score=42.47 Aligned_cols=25 Identities=28% Similarity=0.407 Sum_probs=20.3
Q ss_pred HHHHHhcCCc--EEEEcCCCchHHHHH
Q psy16633 48 AIPLILQNKD--VLVRARTGSGKTGAF 72 (540)
Q Consensus 48 ai~~il~gkd--~li~a~TGsGKT~a~ 72 (540)
.+..+++|.+ +++-++||||||.+.
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 5666678887 788999999999764
No 231
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=73.40 E-value=8.9 Score=35.18 Aligned_cols=55 Identities=7% Similarity=0.148 Sum_probs=43.6
Q ss_pred CCcEEEEecChhhHHHHHHHHHh----CCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCC
Q psy16633 266 QGKTIIFVNTVDKCYKLKLYLEQ----FKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324 (540)
Q Consensus 266 ~~k~IIF~~s~~~~~~l~~~L~~----~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~ 324 (540)
+.++||.++++.-+..++..+++ .++.+..++|+.+.......+.. ..+|+|+|.
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp 160 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATP 160 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECH
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECH
Confidence 45799999999988888776655 48899999999987766554432 489999997
No 232
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=72.96 E-value=2.4 Score=42.44 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=19.9
Q ss_pred HHHHHhcCCc--EEEEcCCCchHHHHH
Q psy16633 48 AIPLILQNKD--VLVRARTGSGKTGAF 72 (540)
Q Consensus 48 ai~~il~gkd--~li~a~TGsGKT~a~ 72 (540)
.+..+++|.+ +++-+.||||||.+.
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeEe
Confidence 4555677876 889999999999764
No 233
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=72.95 E-value=8.6 Score=34.96 Aligned_cols=54 Identities=9% Similarity=0.143 Sum_probs=43.8
Q ss_pred CCcEEEEecChhhHHHHHHHHHhC-----CCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCC
Q psy16633 266 QGKTIIFVNTVDKCYKLKLYLEQF-----KISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324 (540)
Q Consensus 266 ~~k~IIF~~s~~~~~~l~~~L~~~-----~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~ 324 (540)
..++||.++++.-+..++..++++ ++.+..++|+.+...+...+ ...+|+|+|.
T Consensus 92 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp 150 (230)
T 2oxc_A 92 STQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSP 150 (230)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECH
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECH
Confidence 458999999999999998888764 67889999998876654433 3589999998
No 234
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=72.80 E-value=5.8 Score=45.41 Aligned_cols=58 Identities=5% Similarity=0.184 Sum_probs=48.9
Q ss_pred cCCcEEEEecChhhHHHHHHHHHhC----CC----ceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCC
Q psy16633 265 VQGKTIIFVNTVDKCYKLKLYLEQF----KI----STCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324 (540)
Q Consensus 265 ~~~k~IIF~~s~~~~~~l~~~L~~~----~~----~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~ 324 (540)
.+.++||.++++.-|..++..++++ ++ .+..++|+.+...+....+.+.+ .+|+|+|+
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP 163 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTT 163 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEH
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcH
Confidence 4568999999999998888877653 56 88999999999888777777766 99999998
No 235
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=72.53 E-value=4.2 Score=44.83 Aligned_cols=16 Identities=44% Similarity=0.461 Sum_probs=14.2
Q ss_pred CcEEEEcCCCchHHHH
Q psy16633 56 KDVLVRARTGSGKTGA 71 (540)
Q Consensus 56 kd~li~a~TGsGKT~a 71 (540)
+.+|+.+|+|+|||+.
T Consensus 512 ~gvLl~GPPGtGKT~l 527 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLL 527 (806)
T ss_dssp SCCEEESSTTSSHHHH
T ss_pred ceEEEecCCCCCchHH
Confidence 5799999999999963
No 236
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=72.37 E-value=2 Score=42.36 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=19.7
Q ss_pred HHHHHhcCCc--EEEEcCCCchHHHHH
Q psy16633 48 AIPLILQNKD--VLVRARTGSGKTGAF 72 (540)
Q Consensus 48 ai~~il~gkd--~li~a~TGsGKT~a~ 72 (540)
.+..+++|.+ +++-+.||||||.+.
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 4455667876 789999999999764
No 237
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=72.17 E-value=2.6 Score=42.59 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=21.2
Q ss_pred HHHHHHhcCCc--EEEEcCCCchHHHHH
Q psy16633 47 RAIPLILQNKD--VLVRARTGSGKTGAF 72 (540)
Q Consensus 47 ~ai~~il~gkd--~li~a~TGsGKT~a~ 72 (540)
..+..++.|.+ +++.|.||||||.+.
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 35677788887 789999999999764
No 238
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=72.16 E-value=2.2 Score=42.45 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=20.5
Q ss_pred HHHHHhcCCc--EEEEcCCCchHHHHH
Q psy16633 48 AIPLILQNKD--VLVRARTGSGKTGAF 72 (540)
Q Consensus 48 ai~~il~gkd--~li~a~TGsGKT~a~ 72 (540)
.+..++.|.+ +++-|.||||||.+.
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 5666778887 788999999999764
No 239
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=72.10 E-value=2.4 Score=42.31 Aligned_cols=24 Identities=33% Similarity=0.534 Sum_probs=18.9
Q ss_pred HHHHhcCCc--EEEEcCCCchHHHHH
Q psy16633 49 IPLILQNKD--VLVRARTGSGKTGAF 72 (540)
Q Consensus 49 i~~il~gkd--~li~a~TGsGKT~a~ 72 (540)
+..+++|.+ +++-+.||||||.+.
T Consensus 93 v~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 93 IEEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCceEEEEeecCCCCCcceec
Confidence 445667876 889999999999753
No 240
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=71.96 E-value=8 Score=35.40 Aligned_cols=57 Identities=2% Similarity=0.094 Sum_probs=36.7
Q ss_pred cCCcEEEEecChhhHHHHHHHHHhC----CCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCC
Q psy16633 265 VQGKTIIFVNTVDKCYKLKLYLEQF----KISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324 (540)
Q Consensus 265 ~~~k~IIF~~s~~~~~~l~~~L~~~----~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~ 324 (540)
...++||.++++.-+..++..++++ ++.+..++|+..... ....+..+..+|+|+|.
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp 157 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTP 157 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECH
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECH
Confidence 3458999999999999988888765 567778888765433 23445567799999996
No 241
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=71.01 E-value=1.7 Score=42.17 Aligned_cols=16 Identities=38% Similarity=0.333 Sum_probs=13.5
Q ss_pred CcEEEEcCCCchHHHH
Q psy16633 56 KDVLVRARTGSGKTGA 71 (540)
Q Consensus 56 kd~li~a~TGsGKT~a 71 (540)
+-++|.||||||||..
T Consensus 4 ~~i~i~GptgsGKt~l 19 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKT 19 (322)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred cEEEEECCCcCCHHHH
Confidence 4478999999999974
No 242
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=70.96 E-value=1.7 Score=42.66 Aligned_cols=17 Identities=29% Similarity=0.460 Sum_probs=14.3
Q ss_pred CCcEEEEcCCCchHHHH
Q psy16633 55 NKDVLVRARTGSGKTGA 71 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a 71 (540)
++-++|.||||||||..
T Consensus 40 ~~lIvI~GPTgsGKTtL 56 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRL 56 (339)
T ss_dssp CEEEEEECSTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 34689999999999974
No 243
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=70.96 E-value=4.2 Score=39.32 Aligned_cols=26 Identities=31% Similarity=0.413 Sum_probs=18.8
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHh
Q psy16633 55 NKDVLVRARTGSGKTGAFAIPMIQKIIN 82 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a~~ipil~~l~~ 82 (540)
|+-+.+.+|+|||||. ++..+..++.
T Consensus 102 g~vi~lvG~nGsGKTT--ll~~Lagll~ 127 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTT--TIAKLGRYYQ 127 (304)
T ss_dssp SSEEEEECSTTSSHHH--HHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHH--HHHHHHHHHH
Confidence 4568899999999997 4445555554
No 244
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=70.58 E-value=3 Score=42.64 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=19.1
Q ss_pred HHHHhcCCc--EEEEcCCCchHHHHH
Q psy16633 49 IPLILQNKD--VLVRARTGSGKTGAF 72 (540)
Q Consensus 49 i~~il~gkd--~li~a~TGsGKT~a~ 72 (540)
+..++.|.+ +++-|.||||||.+.
T Consensus 129 v~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 129 LDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 445577876 889999999999764
No 245
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=69.99 E-value=34 Score=35.64 Aligned_cols=78 Identities=14% Similarity=0.260 Sum_probs=54.8
Q ss_pred CCCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchh----hhhCCCCEEEEChHHHHHHHhcCcCC
Q psy16633 89 VQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEP----LLVERPDIVVATPARALAHLKAKTLD 164 (540)
Q Consensus 89 ~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~----~l~~~~~Ivv~Tp~~l~~~l~~~~~~ 164 (540)
..+.++||.|+|+.-+..+++.+..... .++.+..+.|+.....+.. ...+..+|+|||.- -..+++
T Consensus 337 ~~~~~~iVF~~s~~~~~~l~~~L~~~~~---~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~------~~~GiD 407 (563)
T 3i5x_A 337 DSNYKAIIFAPTVKFTSFLCSILKNEFK---KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDV------GARGMD 407 (563)
T ss_dssp TTCCEEEEECSCHHHHHHHHHHHHHHHT---TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGG------GTSSCC
T ss_pred CCCCcEEEEcCcHHHHHHHHHHHHHhcc---CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcch------hhcCCC
Confidence 4577999999999999999998887643 2566777777765444332 23467889999942 234566
Q ss_pred ccCCccEEEEcC
Q psy16633 165 LKSSLEIVIIDE 176 (540)
Q Consensus 165 ~~~~l~~lViDE 176 (540)
+ ..+++||.-.
T Consensus 408 i-p~v~~VI~~~ 418 (563)
T 3i5x_A 408 F-PNVHEVLQIG 418 (563)
T ss_dssp C-TTCCEEEEES
T ss_pred c-ccCCEEEEEC
Confidence 6 6788877544
No 246
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=69.97 E-value=1.7 Score=39.26 Aligned_cols=17 Identities=29% Similarity=0.532 Sum_probs=14.6
Q ss_pred CCcEEEEcCCCchHHHH
Q psy16633 55 NKDVLVRARTGSGKTGA 71 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a 71 (540)
|+-+++.+|||+|||..
T Consensus 34 g~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSET 50 (205)
T ss_dssp TEEEEEECCCTTTTHHH
T ss_pred CEEEEEECCCCCCHHHH
Confidence 56689999999999963
No 247
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=69.90 E-value=2.5 Score=42.35 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=18.3
Q ss_pred HHHhcCCc--EEEEcCCCchHHHHH
Q psy16633 50 PLILQNKD--VLVRARTGSGKTGAF 72 (540)
Q Consensus 50 ~~il~gkd--~li~a~TGsGKT~a~ 72 (540)
..++.|.+ +++-++||||||.+.
T Consensus 92 ~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 92 RHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HHhhcCceeeEeeecCCCCCCCeEe
Confidence 34567876 789999999999754
No 248
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=69.76 E-value=6.1 Score=35.67 Aligned_cols=55 Identities=4% Similarity=0.074 Sum_probs=36.3
Q ss_pred cCCcEEEEecChhhHHHHHHHHHhC----CCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCC
Q psy16633 265 VQGKTIIFVNTVDKCYKLKLYLEQF----KISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324 (540)
Q Consensus 265 ~~~k~IIF~~s~~~~~~l~~~L~~~----~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~ 324 (540)
...++||.++++.-+..++..+.++ ++.+..++|+.+.......+ ...+|+|+|.
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp 139 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL-----RDAQIVVGTP 139 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------C-----TTCSEEEECH
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcC-----CCCCEEEECH
Confidence 3458999999999998888877654 67888899987655443222 2389999997
No 249
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=69.64 E-value=2.2 Score=38.14 Aligned_cols=18 Identities=22% Similarity=0.337 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCchHHHH
Q psy16633 54 QNKDVLVRARTGSGKTGA 71 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~a 71 (540)
.++.+++.|++|||||..
T Consensus 24 ~~~~i~l~G~~GsGKsTl 41 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTL 41 (199)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCCEEEEEcCCCCCHHHH
Confidence 467899999999999974
No 250
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=69.54 E-value=8.2 Score=35.17 Aligned_cols=55 Identities=11% Similarity=0.123 Sum_probs=41.2
Q ss_pred cCCcEEEEecChhhHHHHHHHHHhC----CCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCC
Q psy16633 265 VQGKTIIFVNTVDKCYKLKLYLEQF----KISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324 (540)
Q Consensus 265 ~~~k~IIF~~s~~~~~~l~~~L~~~----~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~ 324 (540)
.+.++||.++++.-+..++..++++ ++.+..++|+.+.......+ +..+|+|+|.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp 154 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTP 154 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECH
Confidence 3558999999999999988888765 47888999987655443332 4689999997
No 251
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=69.43 E-value=2.1 Score=41.50 Aligned_cols=15 Identities=33% Similarity=0.474 Sum_probs=13.0
Q ss_pred cEEEEcCCCchHHHH
Q psy16633 57 DVLVRARTGSGKTGA 71 (540)
Q Consensus 57 d~li~a~TGsGKT~a 71 (540)
-++|.||||||||..
T Consensus 12 ~i~i~GptgsGKt~l 26 (316)
T 3foz_A 12 AIFLMGPTASGKTAL 26 (316)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCccCHHHH
Confidence 478999999999974
No 252
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=69.39 E-value=2.2 Score=38.49 Aligned_cols=18 Identities=17% Similarity=0.311 Sum_probs=15.3
Q ss_pred cCCcEEEEcCCCchHHHH
Q psy16633 54 QNKDVLVRARTGSGKTGA 71 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~a 71 (540)
.|+-+++.||+|||||..
T Consensus 7 ~g~~i~l~GpsGsGKsTl 24 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTV 24 (208)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 466789999999999973
No 253
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=69.38 E-value=6.4 Score=45.68 Aligned_cols=60 Identities=20% Similarity=0.279 Sum_probs=43.4
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHHhhcc----cccCCCeEEEEEcCcHHHHHHHHHHHHHHHh
Q psy16633 57 DVLVRARTGSGKTGAFAIPMIQKIINLKQ----TAQVQETKALVLSPSKELCNQLHKNIQELTM 116 (540)
Q Consensus 57 d~li~a~TGsGKT~a~~ipil~~l~~~~~----~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~ 116 (540)
..+|.|.-|||||.+..--++..++.... .......++|+++=|+.-|.++.+++.....
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L~ 81 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNIH 81 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHHH
Confidence 45999999999998866666666653110 0112456899999999999999888776543
No 254
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=69.22 E-value=3.6 Score=40.71 Aligned_cols=18 Identities=39% Similarity=0.486 Sum_probs=15.4
Q ss_pred cCCcEEEEcCCCchHHHH
Q psy16633 54 QNKDVLVRARTGSGKTGA 71 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~a 71 (540)
.+..+++.+|+|+|||..
T Consensus 50 ~~~~vll~GppGtGKT~l 67 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLL 67 (363)
T ss_dssp CCCCEEEECCTTSSHHHH
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 346799999999999974
No 255
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=68.95 E-value=2.2 Score=41.81 Aligned_cols=18 Identities=50% Similarity=0.595 Sum_probs=16.3
Q ss_pred hcCCcEEEEcCCCchHHH
Q psy16633 53 LQNKDVLVRARTGSGKTG 70 (540)
Q Consensus 53 l~gkd~li~a~TGsGKT~ 70 (540)
..|+.+.+.+|||||||.
T Consensus 169 ~~g~~v~i~G~~GsGKTT 186 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTT 186 (330)
T ss_dssp HHTCCEEEEESTTSCHHH
T ss_pred cCCCEEEEECCCCCCHHH
Confidence 458899999999999997
No 256
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=68.19 E-value=3 Score=41.59 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=19.5
Q ss_pred HHHHHhcCCc--EEEEcCCCchHHHHH
Q psy16633 48 AIPLILQNKD--VLVRARTGSGKTGAF 72 (540)
Q Consensus 48 ai~~il~gkd--~li~a~TGsGKT~a~ 72 (540)
.+..+++|.+ +++-+.||||||.+.
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 3455667876 789999999999754
No 257
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=68.13 E-value=2.4 Score=37.17 Aligned_cols=18 Identities=22% Similarity=0.276 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCchHHHHH
Q psy16633 55 NKDVLVRARTGSGKTGAF 72 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a~ 72 (540)
++.+++.|++|||||...
T Consensus 5 ~~~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVG 22 (185)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 567999999999999743
No 258
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=67.88 E-value=12 Score=37.48 Aligned_cols=18 Identities=11% Similarity=0.003 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCchHHHHH
Q psy16633 55 NKDVLVRARTGSGKTGAF 72 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a~ 72 (540)
|.-+.|.+|+|||||...
T Consensus 178 Gei~~I~G~sGsGKTTLl 195 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLC 195 (400)
T ss_dssp TSEEEEEESTTSSHHHHH
T ss_pred CcEEEEEcCCCCChHHHH
Confidence 355899999999999743
No 259
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=67.71 E-value=3.5 Score=39.75 Aligned_cols=18 Identities=28% Similarity=0.525 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCchHHHH
Q psy16633 54 QNKDVLVRARTGSGKTGA 71 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~a 71 (540)
.+..+++.++||+|||..
T Consensus 24 ~~~~vLi~Ge~GtGKt~l 41 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELV 41 (304)
T ss_dssp TTSCEEEESCTTSCHHHH
T ss_pred CCCcEEEECCCCchHHHH
Confidence 356899999999999974
No 260
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=67.69 E-value=4.6 Score=38.56 Aligned_cols=18 Identities=22% Similarity=0.399 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCchHHHH
Q psy16633 54 QNKDVLVRARTGSGKTGA 71 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~a 71 (540)
.|.-+++.||+|+|||..
T Consensus 34 ~G~~~~i~G~~G~GKTTl 51 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTF 51 (296)
T ss_dssp TTCEEEEEESTTSSHHHH
T ss_pred CCeEEEEEeCCCCCHHHH
Confidence 467799999999999973
No 261
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=67.22 E-value=2.4 Score=40.83 Aligned_cols=18 Identities=39% Similarity=0.423 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCchHHHH
Q psy16633 54 QNKDVLVRARTGSGKTGA 71 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~a 71 (540)
.++.+++.||+|+|||..
T Consensus 48 ~~~~vLL~Gp~GtGKT~l 65 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLL 65 (301)
T ss_dssp CCSEEEEECSSSSSHHHH
T ss_pred CCceEEEECCCCcCHHHH
Confidence 357799999999999974
No 262
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=66.87 E-value=2.7 Score=37.65 Aligned_cols=17 Identities=24% Similarity=0.509 Sum_probs=14.1
Q ss_pred cCCcEEEEcCCCchHHH
Q psy16633 54 QNKDVLVRARTGSGKTG 70 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~ 70 (540)
.|+-+.+.||+|+|||.
T Consensus 3 ~g~~i~lvGpsGaGKST 19 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKST 19 (198)
T ss_dssp --CCEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 46789999999999997
No 263
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=66.78 E-value=10 Score=47.61 Aligned_cols=47 Identities=13% Similarity=0.206 Sum_probs=32.9
Q ss_pred CHHHHHHHHHCCCCCChHHH-HHHH---HHHhcCCcEEEEcCCCchHHHHHH
Q psy16633 26 FCIPLQAIAKLGWLEPTLIQ-ERAI---PLILQNKDVLVRARTGSGKTGAFA 73 (540)
Q Consensus 26 ~~~i~~~l~~~g~~~pt~~Q-~~ai---~~il~gkd~li~a~TGsGKT~a~~ 73 (540)
...+.+++.+.|+ .|++.+ .+++ ..+...+.+++.||||||||.++-
T Consensus 891 ~~~i~~~~~~~~l-~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~ 941 (2695)
T 4akg_A 891 VQCLKDAGQRSGF-SMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWK 941 (2695)
T ss_dssp HHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHHcCC-cccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHH
Confidence 4557778888888 566655 3333 333446789999999999998643
No 264
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=66.74 E-value=15 Score=32.37 Aligned_cols=55 Identities=11% Similarity=0.065 Sum_probs=42.5
Q ss_pred CCcEEEEecChhhHHHHHHHHHhC-----CCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCC
Q psy16633 266 QGKTIIFVNTVDKCYKLKLYLEQF-----KISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324 (540)
Q Consensus 266 ~~k~IIF~~s~~~~~~l~~~L~~~-----~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~ 324 (540)
..++||.++++.-+..++..+.+. +..+..++|+.+....... ..+..+|+|+|.
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~i~v~T~ 130 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR----LDDTVHVVIATP 130 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH----TTSCCSEEEECH
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh----cCCCCCEEEeCH
Confidence 457999999999998888877654 6788899999876654322 235689999997
No 265
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=66.64 E-value=2.7 Score=36.53 Aligned_cols=17 Identities=18% Similarity=0.546 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCchHHHH
Q psy16633 55 NKDVLVRARTGSGKTGA 71 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a 71 (540)
++-+++.|+.|||||.+
T Consensus 3 ~~~i~l~G~~GsGKST~ 19 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGI 19 (178)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 45689999999999974
No 266
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=66.47 E-value=2.5 Score=40.37 Aligned_cols=17 Identities=35% Similarity=0.419 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCchHHHH
Q psy16633 55 NKDVLVRARTGSGKTGA 71 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a 71 (540)
++.+++.||+|+|||..
T Consensus 54 ~~~vll~Gp~GtGKT~l 70 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLL 70 (297)
T ss_dssp CSEEEEESSSSSCHHHH
T ss_pred CCeEEEECcCCCCHHHH
Confidence 57899999999999974
No 267
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=66.46 E-value=4.3 Score=39.18 Aligned_cols=25 Identities=16% Similarity=0.351 Sum_probs=17.8
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHh
Q psy16633 56 KDVLVRARTGSGKTGAFAIPMIQKIIN 82 (540)
Q Consensus 56 kd~li~a~TGsGKT~a~~ipil~~l~~ 82 (540)
.-+.+.+|+|||||. ++..+..++.
T Consensus 101 ~vi~lvG~nGsGKTT--ll~~Lag~l~ 125 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTT--SLGKLAHRLK 125 (302)
T ss_dssp EEEEEECCTTSCHHH--HHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHH--HHHHHHHHHH
Confidence 347899999999997 4444555544
No 268
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=66.33 E-value=13 Score=35.61 Aligned_cols=72 Identities=17% Similarity=0.302 Sum_probs=50.1
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhh----hhCCCCEEEEChHHHHHHHhcCcCCc
Q psy16633 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL----LVERPDIVVATPARALAHLKAKTLDL 165 (540)
Q Consensus 90 ~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~----l~~~~~Ivv~Tp~~l~~~l~~~~~~~ 165 (540)
.+.++||.|+++.-+..+++.+... ++.+..+.|+.....+... ..+..+|+|+|.- -..++++
T Consensus 27 ~~~~~LVF~~t~~~~~~l~~~L~~~------g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~v------a~~Gidi 94 (300)
T 3i32_A 27 SPDRAMVFTRTKAETEEIAQGLLRL------GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDV------AARGLDI 94 (300)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHTT------TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECST------TTCSTTC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhC------CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEech------hhcCccc
Confidence 4678999999999988888777653 4667778887665444333 2457899999921 2345565
Q ss_pred cCCccEEEE
Q psy16633 166 KSSLEIVII 174 (540)
Q Consensus 166 ~~~l~~lVi 174 (540)
..++++|.
T Consensus 95 -~~v~~VI~ 102 (300)
T 3i32_A 95 -PQVDLVVH 102 (300)
T ss_dssp -CCCSEEEE
T ss_pred -cceeEEEE
Confidence 67777764
No 269
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=66.33 E-value=7 Score=40.67 Aligned_cols=26 Identities=31% Similarity=0.417 Sum_probs=18.7
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHH
Q psy16633 55 NKDVLVRARTGSGKTGAFAIPMIQKII 81 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a~~ipil~~l~ 81 (540)
+.+++|.++||||||.+ +-.++..++
T Consensus 167 ~pHlLIaG~TGSGKSt~-L~~li~sLl 192 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVG-VNAMILSML 192 (512)
T ss_dssp SCSEEEECCTTSSHHHH-HHHHHHHHH
T ss_pred CceEEEECCCCCCHHHH-HHHHHHHHH
Confidence 46799999999999974 444443333
No 270
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=66.30 E-value=67 Score=32.34 Aligned_cols=15 Identities=33% Similarity=0.315 Sum_probs=12.6
Q ss_pred cEEEEcCCCchHHHH
Q psy16633 57 DVLVRARTGSGKTGA 71 (540)
Q Consensus 57 d~li~a~TGsGKT~a 71 (540)
-+.+.+++|+|||..
T Consensus 100 vi~i~G~~GsGKTT~ 114 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTT 114 (425)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467889999999974
No 271
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=66.23 E-value=2.6 Score=37.57 Aligned_cols=19 Identities=16% Similarity=0.246 Sum_probs=16.1
Q ss_pred hcCCcEEEEcCCCchHHHH
Q psy16633 53 LQNKDVLVRARTGSGKTGA 71 (540)
Q Consensus 53 l~gkd~li~a~TGsGKT~a 71 (540)
..|+-+.+.||+|||||..
T Consensus 4 ~~g~~i~l~G~~GsGKSTl 22 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTV 22 (207)
T ss_dssp CCCCEEEEECSTTSCHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3577899999999999973
No 272
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=66.08 E-value=2.7 Score=39.10 Aligned_cols=17 Identities=35% Similarity=0.378 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCchHHHH
Q psy16633 55 NKDVLVRARTGSGKTGA 71 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a 71 (540)
.+.+++.||+|+|||..
T Consensus 39 ~~~vll~G~~GtGKT~l 55 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLL 55 (262)
T ss_dssp CCEEEEESCTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 46799999999999974
No 273
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=65.89 E-value=2.8 Score=37.67 Aligned_cols=18 Identities=17% Similarity=0.377 Sum_probs=15.9
Q ss_pred hcCCcEEEEcCCCchHHH
Q psy16633 53 LQNKDVLVRARTGSGKTG 70 (540)
Q Consensus 53 l~gkd~li~a~TGsGKT~ 70 (540)
..|+-+++.||+|+|||.
T Consensus 17 ~~g~~ivl~GPSGaGKsT 34 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSH 34 (197)
T ss_dssp CSCCEEEEECCTTSSHHH
T ss_pred CCCCEEEEECcCCCCHHH
Confidence 367889999999999997
No 274
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=65.77 E-value=46 Score=34.86 Aligned_cols=79 Identities=14% Similarity=0.257 Sum_probs=55.5
Q ss_pred CCCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchh----hhhCCCCEEEEChHHHHHHHhcCcCC
Q psy16633 89 VQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEP----LLVERPDIVVATPARALAHLKAKTLD 164 (540)
Q Consensus 89 ~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~----~l~~~~~Ivv~Tp~~l~~~l~~~~~~ 164 (540)
..+.++||.|+|+.-+..+++.+..... .++.+..+.|+.....+.. ...+..+|+|||.- ...+++
T Consensus 286 ~~~~~~iVF~~t~~~~~~l~~~L~~~~~---~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~------~~~GiD 356 (579)
T 3sqw_A 286 DSNYKAIIFAPTVKFTSFLCSILKNEFK---KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDV------GARGMD 356 (579)
T ss_dssp TTCCEEEEECSSHHHHHHHHHHHHHHHT---TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGG------GTSSCC
T ss_pred CCCCcEEEECCcHHHHHHHHHHHHHhhc---CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcch------hhcCCC
Confidence 3577999999999999999998887643 2566777877765444332 33467889999942 234566
Q ss_pred ccCCccEEEEcCc
Q psy16633 165 LKSSLEIVIIDEA 177 (540)
Q Consensus 165 ~~~~l~~lViDEa 177 (540)
+ ..+++||.-..
T Consensus 357 i-p~v~~VI~~~~ 368 (579)
T 3sqw_A 357 F-PNVHEVLQIGV 368 (579)
T ss_dssp C-TTCCEEEEESC
T ss_pred c-ccCCEEEEcCC
Confidence 6 77888876543
No 275
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=65.64 E-value=2.6 Score=39.44 Aligned_cols=15 Identities=40% Similarity=0.297 Sum_probs=12.9
Q ss_pred cEEEEcCCCchHHHH
Q psy16633 57 DVLVRARTGSGKTGA 71 (540)
Q Consensus 57 d~li~a~TGsGKT~a 71 (540)
-+++.+|||||||..
T Consensus 3 li~I~G~~GSGKSTl 17 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDM 17 (253)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 378999999999973
No 276
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=65.63 E-value=2.7 Score=36.07 Aligned_cols=15 Identities=33% Similarity=0.512 Sum_probs=13.0
Q ss_pred cEEEEcCCCchHHHH
Q psy16633 57 DVLVRARTGSGKTGA 71 (540)
Q Consensus 57 d~li~a~TGsGKT~a 71 (540)
-+++.|++|||||..
T Consensus 3 ~I~l~G~~GsGKsT~ 17 (179)
T 3lw7_A 3 VILITGMPGSGKSEF 17 (179)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999974
No 277
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=65.41 E-value=5.5 Score=36.05 Aligned_cols=37 Identities=30% Similarity=0.108 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHH
Q psy16633 42 TLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKI 80 (540)
Q Consensus 42 t~~Q~~ai~~il~gkd~li~a~TGsGKT~a~~ipil~~l 80 (540)
+.-|..++.-+..|.-+.+.+|.|||||. ++-++.-+
T Consensus 9 ~~g~~~~l~~i~~Ge~~~liG~nGsGKST--Ll~~l~Gl 45 (208)
T 3b85_A 9 TLGQKHYVDAIDTNTIVFGLGPAGSGKTY--LAMAKAVQ 45 (208)
T ss_dssp SHHHHHHHHHHHHCSEEEEECCTTSSTTH--HHHHHHHH
T ss_pred CHhHHHHHHhccCCCEEEEECCCCCCHHH--HHHHHhcC
Confidence 34466778878889999999999999997 34444444
No 278
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=64.72 E-value=3.2 Score=37.00 Aligned_cols=18 Identities=28% Similarity=0.482 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCchHHHH
Q psy16633 54 QNKDVLVRARTGSGKTGA 71 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~a 71 (540)
.|+-+.+.||+|||||..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl 23 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSL 23 (205)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 567789999999999973
No 279
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=64.42 E-value=16 Score=36.67 Aligned_cols=55 Identities=18% Similarity=0.225 Sum_probs=44.8
Q ss_pred cCCcEEEEecChhhHHHHHHHHHhC-CC---ceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCC
Q psy16633 265 VQGKTIIFVNTVDKCYKLKLYLEQF-KI---STCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324 (540)
Q Consensus 265 ~~~k~IIF~~s~~~~~~l~~~L~~~-~~---~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~ 324 (540)
..+++||.|+++.-+......+.++ +. .+..+||+.....+..... ..+|+|+|.
T Consensus 51 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T~ 109 (494)
T 1wp9_A 51 YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIVATP 109 (494)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSEEEECH
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCEEEecH
Confidence 4679999999999999888888775 66 8999999998887655433 478999997
No 280
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=64.28 E-value=2.8 Score=41.38 Aligned_cols=16 Identities=38% Similarity=0.719 Sum_probs=14.3
Q ss_pred CcEEEEcCCCchHHHH
Q psy16633 56 KDVLVRARTGSGKTGA 71 (540)
Q Consensus 56 kd~li~a~TGsGKT~a 71 (540)
+.+++.||+|+|||..
T Consensus 71 ~~vLl~GppGtGKT~l 86 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAI 86 (368)
T ss_dssp CEEEEEESTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4799999999999974
No 281
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=64.25 E-value=6.5 Score=39.06 Aligned_cols=45 Identities=13% Similarity=0.242 Sum_probs=29.3
Q ss_pred HHHHHhc------CCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCc
Q psy16633 48 AIPLILQ------NKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPS 100 (540)
Q Consensus 48 ai~~il~------gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt 100 (540)
.+..++. |.-++|.+++|+|||. +++.++..+.. .+..++|+..-
T Consensus 61 ~LD~~Lg~GGl~~G~li~I~G~pGsGKTt-lal~la~~~~~-------~g~~vlyi~~E 111 (366)
T 1xp8_A 61 SLDLALGVGGIPRGRITEIYGPESGGKTT-LALAIVAQAQK-------AGGTCAFIDAE 111 (366)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHH-HHHHHHHHHHH-------TTCCEEEEESS
T ss_pred HHHHHhCCCCccCCcEEEEEcCCCCChHH-HHHHHHHHHHH-------CCCeEEEEECC
Confidence 4555554 3568999999999997 45555544432 34567777643
No 282
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=64.12 E-value=4.8 Score=39.84 Aligned_cols=47 Identities=21% Similarity=0.218 Sum_probs=30.3
Q ss_pred HHHHHhc------CCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHH
Q psy16633 48 AIPLILQ------NKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKE 102 (540)
Q Consensus 48 ai~~il~------gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~ 102 (540)
.+..++. |.-++|.+|+|+|||. ++..++..+.. .+.+++++..-..
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKST-Lal~la~~~~~-------~gg~VlyId~E~s 100 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTT-LALHAIAEAQK-------MGGVAAFIDAEHA 100 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHH-HHHHHHHHHHH-------TTCCEEEEESSCC
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHH-HHHHHHHHHHh-------cCCeEEEEecccc
Confidence 4555555 4568999999999997 45555544322 4566777765433
No 283
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=64.04 E-value=3.6 Score=35.90 Aligned_cols=18 Identities=28% Similarity=0.403 Sum_probs=15.8
Q ss_pred cCCcEEEEcCCCchHHHH
Q psy16633 54 QNKDVLVRARTGSGKTGA 71 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~a 71 (540)
.++.+++.|++|||||..
T Consensus 10 ~~~~i~i~G~~GsGKst~ 27 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTL 27 (180)
T ss_dssp CCCCEEEECSTTSSHHHH
T ss_pred cCCeEEEEeCCCCCHHHH
Confidence 467899999999999974
No 284
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=63.74 E-value=3 Score=38.86 Aligned_cols=16 Identities=44% Similarity=0.518 Sum_probs=14.2
Q ss_pred CcEEEEcCCCchHHHH
Q psy16633 56 KDVLVRARTGSGKTGA 71 (540)
Q Consensus 56 kd~li~a~TGsGKT~a 71 (540)
+.+++.||+|+|||..
T Consensus 46 ~~vll~G~~GtGKT~l 61 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLL 61 (257)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred CeEEEECcCCCCHHHH
Confidence 5699999999999974
No 285
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=63.39 E-value=5.3 Score=36.04 Aligned_cols=15 Identities=33% Similarity=0.448 Sum_probs=13.5
Q ss_pred cEEEEcCCCchHHHH
Q psy16633 57 DVLVRARTGSGKTGA 71 (540)
Q Consensus 57 d~li~a~TGsGKT~a 71 (540)
.+++.||+|+|||..
T Consensus 47 ~~ll~G~~G~GKT~l 61 (250)
T 1njg_A 47 AYLFSGTRGVGKTSI 61 (250)
T ss_dssp EEEEECSTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 589999999999974
No 286
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=63.34 E-value=3.4 Score=36.31 Aligned_cols=18 Identities=28% Similarity=0.602 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCchHHHH
Q psy16633 54 QNKDVLVRARTGSGKTGA 71 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~a 71 (540)
.+..+++.+++|||||.+
T Consensus 9 ~~~~I~l~G~~GsGKSTv 26 (184)
T 1y63_A 9 KGINILITGTPGTGKTSM 26 (184)
T ss_dssp SSCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 456799999999999974
No 287
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=63.29 E-value=3.7 Score=36.78 Aligned_cols=19 Identities=21% Similarity=0.249 Sum_probs=16.2
Q ss_pred hcCCcEEEEcCCCchHHHH
Q psy16633 53 LQNKDVLVRARTGSGKTGA 71 (540)
Q Consensus 53 l~gkd~li~a~TGsGKT~a 71 (540)
..|+-+++.||+|||||..
T Consensus 10 ~~~~~i~l~G~sGsGKsTl 28 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTL 28 (204)
T ss_dssp CCCCCEEEECCTTSCHHHH
T ss_pred ccCCEEEEECCCCCCHHHH
Confidence 3577899999999999973
No 288
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=63.28 E-value=19 Score=33.54 Aligned_cols=56 Identities=13% Similarity=0.145 Sum_probs=42.4
Q ss_pred cCCcEEEEecChhhHHHHHHHHHhC----CCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCC
Q psy16633 265 VQGKTIIFVNTVDKCYKLKLYLEQF----KISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324 (540)
Q Consensus 265 ~~~k~IIF~~s~~~~~~l~~~L~~~----~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~ 324 (540)
.+.++||.++++.-+..++..++++ +..+..+.|+......... +..| .+|+|+|.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp 184 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATP 184 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcH
Confidence 3567999999999999888888763 5677888888876554333 3344 89999996
No 289
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=63.11 E-value=7.2 Score=37.41 Aligned_cols=17 Identities=35% Similarity=0.532 Sum_probs=14.4
Q ss_pred CCcEEEEcCCCchHHHH
Q psy16633 55 NKDVLVRARTGSGKTGA 71 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a 71 (540)
|+-+++.+++|+|||..
T Consensus 105 g~vi~lvG~~GsGKTTl 121 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTT 121 (296)
T ss_dssp SSEEEEEESTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45688999999999974
No 290
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=63.04 E-value=3.7 Score=35.39 Aligned_cols=17 Identities=18% Similarity=0.524 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCchHHHH
Q psy16633 55 NKDVLVRARTGSGKTGA 71 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a 71 (540)
++.+++.++.|||||..
T Consensus 4 ~~~i~l~G~~GsGKSTl 20 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTI 20 (173)
T ss_dssp CCCEEEECCTTSCHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 56799999999999973
No 291
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=62.98 E-value=4.8 Score=39.83 Aligned_cols=19 Identities=32% Similarity=0.344 Sum_probs=15.8
Q ss_pred cCCc--EEEEcCCCchHHHHH
Q psy16633 54 QNKD--VLVRARTGSGKTGAF 72 (540)
Q Consensus 54 ~gkd--~li~a~TGsGKT~a~ 72 (540)
.|.+ +++-+.||||||.+.
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 4776 699999999999754
No 292
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=62.95 E-value=2.8 Score=36.85 Aligned_cols=18 Identities=33% Similarity=0.519 Sum_probs=15.6
Q ss_pred hcCCcEEEEcCCCchHHH
Q psy16633 53 LQNKDVLVRARTGSGKTG 70 (540)
Q Consensus 53 l~gkd~li~a~TGsGKT~ 70 (540)
..|+-+++.+|.|||||.
T Consensus 7 ~~g~~i~l~G~~GsGKST 24 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKST 24 (191)
T ss_dssp CTTEEEEEEECTTSCHHH
T ss_pred CCCeEEEEECCCCCCHHH
Confidence 356779999999999997
No 293
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=62.86 E-value=9.3 Score=30.24 Aligned_cols=37 Identities=8% Similarity=0.121 Sum_probs=32.4
Q ss_pred cCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCC
Q psy16633 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELP 301 (540)
Q Consensus 265 ~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~ 301 (540)
...++++||.+-..+...+..|.+.|+.+..+.||+.
T Consensus 54 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 54 RDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp TTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 4568999999988899999999999999999999853
No 294
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=62.79 E-value=3.1 Score=42.33 Aligned_cols=47 Identities=15% Similarity=0.145 Sum_probs=28.5
Q ss_pred cCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHH
Q psy16633 22 TFTLFCIPLQAIAKL---GWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGA 71 (540)
Q Consensus 22 ~~~L~~~i~~~l~~~---g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a 71 (540)
+.|--....+.|.+. -+.+|..++..-++ -.+.+|+.||+|+|||+.
T Consensus 182 digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~---~prGvLLyGPPGTGKTll 231 (434)
T 4b4t_M 182 DVGGLDKQIEELVEAIVLPMKRADKFKDMGIR---APKGALMYGPPGTGKTLL 231 (434)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCC---CCCEEEEESCTTSSHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCeeEEECcCCCCHHHH
Confidence 455555556655542 23345444443222 237899999999999974
No 295
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=62.70 E-value=3.7 Score=36.14 Aligned_cols=16 Identities=19% Similarity=0.628 Sum_probs=13.6
Q ss_pred CCcEEEEcCCCchHHH
Q psy16633 55 NKDVLVRARTGSGKTG 70 (540)
Q Consensus 55 gkd~li~a~TGsGKT~ 70 (540)
|+-+.+.||+|||||.
T Consensus 1 ~~ii~l~GpsGaGKsT 16 (186)
T 3a00_A 1 SRPIVISGPSGTGKST 16 (186)
T ss_dssp CCCEEEESSSSSSHHH
T ss_pred CCEEEEECCCCCCHHH
Confidence 3457899999999997
No 296
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=62.65 E-value=16 Score=32.12 Aligned_cols=55 Identities=9% Similarity=0.127 Sum_probs=42.6
Q ss_pred CCcEEEEecChhhHHHHHHHHHhC--CCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCC
Q psy16633 266 QGKTIIFVNTVDKCYKLKLYLEQF--KISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324 (540)
Q Consensus 266 ~~k~IIF~~s~~~~~~l~~~L~~~--~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~ 324 (540)
..++||.++++.-+..++..+.+. ++++..++|+.+.......+. +..+|+|+|.
T Consensus 72 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~ 128 (207)
T 2gxq_A 72 KPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATP 128 (207)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECH
T ss_pred CCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECH
Confidence 458999999999999999988876 467888898877654433332 2589999997
No 297
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=62.53 E-value=3.8 Score=37.26 Aligned_cols=18 Identities=17% Similarity=0.204 Sum_probs=15.5
Q ss_pred hcCCcEEEEcCCCchHHH
Q psy16633 53 LQNKDVLVRARTGSGKTG 70 (540)
Q Consensus 53 l~gkd~li~a~TGsGKT~ 70 (540)
..|+-+.+.+|+|||||.
T Consensus 21 ~~G~~~~lvGpsGsGKST 38 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGT 38 (218)
T ss_dssp -CCCCEEEECSTTSSHHH
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 357889999999999997
No 298
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=61.87 E-value=3.4 Score=40.23 Aligned_cols=16 Identities=25% Similarity=0.468 Sum_probs=14.4
Q ss_pred CcEEEEcCCCchHHHH
Q psy16633 56 KDVLVRARTGSGKTGA 71 (540)
Q Consensus 56 kd~li~a~TGsGKT~a 71 (540)
+.+++.||+|+|||..
T Consensus 46 ~~iLL~GppGtGKT~l 61 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYL 61 (322)
T ss_dssp SEEEEESSSSSCHHHH
T ss_pred ceEEEECCCCccHHHH
Confidence 6799999999999974
No 299
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=61.78 E-value=6.7 Score=36.02 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=18.1
Q ss_pred cCC-cEEEEcCCCchHHHHHHHHHHHHH
Q psy16633 54 QNK-DVLVRARTGSGKTGAFAIPMIQKI 80 (540)
Q Consensus 54 ~gk-d~li~a~TGsGKT~a~~ipil~~l 80 (540)
+|+ ++++.++.|+|||...+ .+...+
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~-~la~~l 30 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAML-QAAHAQ 30 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHH-HHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHH-HHHHHH
Confidence 355 58999999999998543 333333
No 300
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=61.77 E-value=3.7 Score=35.91 Aligned_cols=17 Identities=41% Similarity=0.509 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCchHHHH
Q psy16633 55 NKDVLVRARTGSGKTGA 71 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a 71 (540)
+.-+++.|+.|||||..
T Consensus 3 ~~~I~i~G~~GsGKsT~ 19 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTS 19 (192)
T ss_dssp CCEEEEECCTTSCHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 56789999999999974
No 301
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=61.61 E-value=6.4 Score=45.63 Aligned_cols=31 Identities=10% Similarity=0.091 Sum_probs=24.1
Q ss_pred CcEEEEecChh-hHHHHHHHHHhCCCceEEeC
Q psy16633 267 GKTIIFVNTVD-KCYKLKLYLEQFKISTCVLN 297 (540)
Q Consensus 267 ~k~IIF~~s~~-~~~~l~~~L~~~~~~~~~l~ 297 (540)
+.+.|.|.+.. .+..+...|.+.|+++.+..
T Consensus 343 ~diAVL~R~~~~~~~~i~~~L~~~gIP~~~~~ 374 (1166)
T 3u4q_B 343 KDVAILARQPEDYKDMVKEVFADYEIPYFIDG 374 (1166)
T ss_dssp GGEEEEESCGGGTHHHHHHHHHHTTCCEEESS
T ss_pred hheEEEeCChHHHHHHHHHHHHHcCCCEEECC
Confidence 35888888874 78889999999888776543
No 302
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=61.59 E-value=13 Score=47.34 Aligned_cols=70 Identities=19% Similarity=0.198 Sum_probs=42.3
Q ss_pred CCHHHHHHHHHCCCCCChHHH-HHHHHH---HhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCc
Q psy16633 25 LFCIPLQAIAKLGWLEPTLIQ-ERAIPL---ILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPS 100 (540)
Q Consensus 25 L~~~i~~~l~~~g~~~pt~~Q-~~ai~~---il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt 100 (540)
|...|.+++.++|+ .|++.+ .+++.+ +.....+++.||||||||.++- +|...+..- .......-++-|-
T Consensus 873 l~~ai~~~~~~~~L-~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~--~L~~al~~l---~~~~~~~~~iNPK 946 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHL-VTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE--VYLEAIEQV---DNIKSEAHVMDPK 946 (3245)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH--HHHHHHTTT---TTCEEEEEEECTT
T ss_pred HHHHHHHHHHHcCC-ccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH--HHHHHHHHh---hCCCceEEEECCC
Confidence 34567778888999 566654 344432 2335679999999999998643 444444321 1123345556664
No 303
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=61.30 E-value=3.3 Score=39.69 Aligned_cols=16 Identities=19% Similarity=0.113 Sum_probs=13.8
Q ss_pred CcEEEEcCCCchHHHH
Q psy16633 56 KDVLVRARTGSGKTGA 71 (540)
Q Consensus 56 kd~li~a~TGsGKT~a 71 (540)
+.+++.||+|+|||..
T Consensus 37 ~~lLl~GppGtGKT~l 52 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQ 52 (293)
T ss_dssp SEEEEEECTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4689999999999973
No 304
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=61.26 E-value=36 Score=26.69 Aligned_cols=56 Identities=16% Similarity=0.204 Sum_probs=44.6
Q ss_pred EEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCC
Q psy16633 269 TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324 (540)
Q Consensus 269 ~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~ 324 (540)
.+||.+...-...+...++..|.++..++++-..+.|..-++.|.....++--.-|
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdvrtved 60 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDVRTVED 60 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEEEECCS
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCceeeecc
Confidence 45777777777788888888999999999999999999999999876666544333
No 305
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=61.10 E-value=10 Score=39.99 Aligned_cols=41 Identities=27% Similarity=0.431 Sum_probs=26.2
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCc
Q psy16633 56 KDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPS 100 (540)
Q Consensus 56 kd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt 100 (540)
-+++|.+.||||||.+ +-.++..++... .....+++++=|-
T Consensus 215 pHlLIaG~TGSGKS~~-L~tlI~sLl~~~---sP~ev~lilIDpK 255 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVG-VNAMLLSILFKS---TPSEARLIMIDPK 255 (574)
T ss_dssp CCEEEECCTTSSHHHH-HHHHHHHHHTTC---CTTTEEEEEECSS
T ss_pred CeeEEECCCCCCHHHH-HHHHHHHHHHhC---CCcceEEEEeCCC
Confidence 5799999999999974 444444444321 1334566666555
No 306
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=60.97 E-value=6 Score=39.17 Aligned_cols=25 Identities=16% Similarity=0.351 Sum_probs=17.8
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHh
Q psy16633 56 KDVLVRARTGSGKTGAFAIPMIQKIIN 82 (540)
Q Consensus 56 kd~li~a~TGsGKT~a~~ipil~~l~~ 82 (540)
.-+.+.+|+|||||. ++..+..++.
T Consensus 158 ~vi~lvG~nGsGKTT--ll~~Lag~l~ 182 (359)
T 2og2_A 158 AVIMIVGVNGGGKTT--SLGKLAHRLK 182 (359)
T ss_dssp EEEEEECCTTSCHHH--HHHHHHHHHH
T ss_pred eEEEEEcCCCChHHH--HHHHHHhhcc
Confidence 347899999999997 4444555544
No 307
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=60.59 E-value=3.8 Score=39.90 Aligned_cols=16 Identities=25% Similarity=0.401 Sum_probs=13.7
Q ss_pred CcEEEEcCCCchHHHH
Q psy16633 56 KDVLVRARTGSGKTGA 71 (540)
Q Consensus 56 kd~li~a~TGsGKT~a 71 (540)
+.+++.||||||||..
T Consensus 6 ~~i~i~GptGsGKTtl 21 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDL 21 (323)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 3588999999999973
No 308
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=60.54 E-value=6.3 Score=38.48 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=18.4
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHh
Q psy16633 55 NKDVLVRARTGSGKTGAFAIPMIQKIIN 82 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a~~ipil~~l~~ 82 (540)
|.-+.+.+|+|+|||. ++..+..++.
T Consensus 129 g~vi~lvG~nGaGKTT--ll~~Lag~l~ 154 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTT--TIAKLANWLK 154 (328)
T ss_dssp SEEEEEECCTTSSHHH--HHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHH--HHHHHHHHHH
Confidence 4458899999999997 4444545544
No 309
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=60.43 E-value=6.9 Score=38.54 Aligned_cols=44 Identities=16% Similarity=0.208 Sum_probs=27.9
Q ss_pred HHHHHhc------CCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcC
Q psy16633 48 AIPLILQ------NKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSP 99 (540)
Q Consensus 48 ai~~il~------gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~P 99 (540)
.+..++. |.-+++.+++|+|||.. ++-++..+.. .+.+++++.-
T Consensus 48 ~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtL-al~la~~~~~-------~g~~vlyi~~ 97 (349)
T 2zr9_A 48 SLDVALGIGGLPRGRVIEIYGPESSGKTTV-ALHAVANAQA-------AGGIAAFIDA 97 (349)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHH-HHHHHHHHHH-------TTCCEEEEES
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHH-HHHHHHHHHh-------CCCeEEEEEC
Confidence 3455555 45699999999999974 3444433322 3556777754
No 310
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=60.43 E-value=3.9 Score=35.40 Aligned_cols=15 Identities=33% Similarity=0.328 Sum_probs=13.1
Q ss_pred cEEEEcCCCchHHHH
Q psy16633 57 DVLVRARTGSGKTGA 71 (540)
Q Consensus 57 d~li~a~TGsGKT~a 71 (540)
-+++.|++|||||..
T Consensus 4 ~I~i~G~~GsGKST~ 18 (181)
T 1ly1_A 4 IILTIGCPGSGKSTW 18 (181)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEecCCCCCHHHH
Confidence 478999999999974
No 311
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=60.37 E-value=11 Score=38.14 Aligned_cols=55 Identities=15% Similarity=0.105 Sum_probs=41.7
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEECh
Q psy16633 91 ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATP 151 (540)
Q Consensus 91 ~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp 151 (540)
+.++||++|+++-+..+++.+... +..+..+.|+...........+..+|+|||.
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~------~~~v~~lhg~~r~~~~~~f~~g~~~vLVaT~ 225 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA------GKKVLYLNRKTFESEYPKCKSEKWDFVITTD 225 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT------TCCEEEESTTTHHHHTTHHHHSCCSEEEECG
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc------CCeEEEeCCccHHHHHHhhcCCCCeEEEECc
Confidence 557999999999999988888765 4566777776544444455567889999994
No 312
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=60.34 E-value=4.6 Score=38.65 Aligned_cols=16 Identities=38% Similarity=0.405 Sum_probs=14.0
Q ss_pred CcEEEEcCCCchHHHH
Q psy16633 56 KDVLVRARTGSGKTGA 71 (540)
Q Consensus 56 kd~li~a~TGsGKT~a 71 (540)
..+++.||+|+|||..
T Consensus 48 ~~~ll~G~~GtGKt~l 63 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTEL 63 (311)
T ss_dssp EEEEEESCSSSSHHHH
T ss_pred eEEEEECCCCcCHHHH
Confidence 3699999999999974
No 313
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=60.26 E-value=3.9 Score=40.16 Aligned_cols=15 Identities=33% Similarity=0.381 Sum_probs=13.2
Q ss_pred cEEEEcCCCchHHHH
Q psy16633 57 DVLVRARTGSGKTGA 71 (540)
Q Consensus 57 d~li~a~TGsGKT~a 71 (540)
-++|.||||||||..
T Consensus 9 lI~I~GptgSGKTtl 23 (340)
T 3d3q_A 9 LIVIVGPTASGKTEL 23 (340)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred eEEEECCCcCcHHHH
Confidence 578999999999974
No 314
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=60.19 E-value=7.4 Score=38.48 Aligned_cols=37 Identities=16% Similarity=0.186 Sum_probs=24.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcC
Q psy16633 55 NKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSP 99 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~P 99 (540)
|.-+++.+++|+|||..+ +.++..+.. .+.+++++..
T Consensus 63 G~ii~I~G~pGsGKTtLa-l~la~~~~~-------~g~~vlyid~ 99 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLT-LQVIAAAQR-------EGKTCAFIDA 99 (356)
T ss_dssp TSEEEEECSTTSSHHHHH-HHHHHHHHH-------TTCCEEEEES
T ss_pred CeEEEEECCCCCCHHHHH-HHHHHHHHH-------CCCeEEEEeC
Confidence 456999999999999743 444443322 3556777765
No 315
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=60.16 E-value=3.6 Score=35.76 Aligned_cols=19 Identities=26% Similarity=0.275 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCchHHHHH
Q psy16633 54 QNKDVLVRARTGSGKTGAF 72 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~a~ 72 (540)
.|.-+.+.+|+|||||..+
T Consensus 8 ~gei~~l~G~nGsGKSTl~ 26 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFA 26 (171)
T ss_dssp SSEEEEEECCTTSCHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 4666889999999999743
No 316
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=60.13 E-value=12 Score=38.15 Aligned_cols=69 Identities=16% Similarity=0.213 Sum_probs=44.6
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCcc
Q psy16633 91 ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLE 170 (540)
Q Consensus 91 ~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~ 170 (540)
+.++||.||+++-+..+++.++.. ++.+..+.|+...........+..+|+|||.- -..++++ . ++
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~------~~~v~~lhg~~R~~~~~~F~~g~~~vLVaT~v------~e~GiDi-p-v~ 242 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA------GKSVVVLNRKTFEREYPTIKQKKPDFILATDI------AEMGANL-C-VE 242 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT------TCCEEECCSSSCC--------CCCSEEEESSS------TTCCTTC-C-CS
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc------CCCEEEecchhHHHHHhhhcCCCceEEEECCh------hheeecc-C-ce
Confidence 568999999999999999888765 35667777754433344444567899999932 2344555 5 77
Q ss_pred EEE
Q psy16633 171 IVI 173 (540)
Q Consensus 171 ~lV 173 (540)
+||
T Consensus 243 ~VI 245 (440)
T 1yks_A 243 RVL 245 (440)
T ss_dssp EEE
T ss_pred EEE
Confidence 765
No 317
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=60.01 E-value=4.4 Score=36.04 Aligned_cols=15 Identities=20% Similarity=0.649 Sum_probs=13.5
Q ss_pred CcEEEEcCCCchHHH
Q psy16633 56 KDVLVRARTGSGKTG 70 (540)
Q Consensus 56 kd~li~a~TGsGKT~ 70 (540)
+-+++.||.|+|||.
T Consensus 2 RpIVi~GPSG~GK~T 16 (186)
T 1ex7_A 2 RPIVISGPSGTGKST 16 (186)
T ss_dssp CCEEEECCTTSSHHH
T ss_pred CEEEEECCCCCCHHH
Confidence 458999999999997
No 318
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=59.83 E-value=3.9 Score=41.16 Aligned_cols=15 Identities=27% Similarity=0.490 Sum_probs=12.9
Q ss_pred cEEEEcCCCchHHHH
Q psy16633 57 DVLVRARTGSGKTGA 71 (540)
Q Consensus 57 d~li~a~TGsGKT~a 71 (540)
-++|.||||||||..
T Consensus 4 ~i~i~GptgsGKttl 18 (409)
T 3eph_A 4 VIVIAGTTGVGKSQL 18 (409)
T ss_dssp EEEEEECSSSSHHHH
T ss_pred EEEEECcchhhHHHH
Confidence 378999999999964
No 319
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=59.82 E-value=25 Score=34.80 Aligned_cols=72 Identities=24% Similarity=0.294 Sum_probs=50.6
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhh----hhCCCCEEEEChHHHHHHHhcCcCCc
Q psy16633 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL----LVERPDIVVATPARALAHLKAKTLDL 165 (540)
Q Consensus 90 ~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~----l~~~~~Ivv~Tp~~l~~~l~~~~~~~ 165 (540)
.+.++||.++++.-+..+++.+... ++.+..+.|+.....+... ..+..+|+|+|. . -..++++
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~-~~~Gidi 342 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE------GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----V-AARGLDI 342 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT------TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----H-HHTTSCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC------CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----h-hhcCCCc
Confidence 5778999999999999988888764 4566777777654443322 245789999994 2 2345565
Q ss_pred cCCccEEEE
Q psy16633 166 KSSLEIVII 174 (540)
Q Consensus 166 ~~~l~~lVi 174 (540)
..++++|.
T Consensus 343 -p~v~~Vi~ 350 (417)
T 2i4i_A 343 -SNVKHVIN 350 (417)
T ss_dssp -CCEEEEEE
T ss_pred -ccCCEEEE
Confidence 67777765
No 320
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=59.61 E-value=4.4 Score=36.10 Aligned_cols=18 Identities=39% Similarity=0.547 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCchHHHH
Q psy16633 54 QNKDVLVRARTGSGKTGA 71 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~a 71 (540)
.|+-+++.++.|||||..
T Consensus 28 ~g~~i~l~G~~GsGKSTl 45 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTI 45 (200)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 467799999999999973
No 321
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=59.49 E-value=6.9 Score=37.76 Aligned_cols=15 Identities=33% Similarity=0.530 Sum_probs=12.9
Q ss_pred cEEEEcCCCchHHHH
Q psy16633 57 DVLVRARTGSGKTGA 71 (540)
Q Consensus 57 d~li~a~TGsGKT~a 71 (540)
-+++.+++|+|||..
T Consensus 106 vi~ivG~~GsGKTTl 120 (306)
T 1vma_A 106 VIMVVGVNGTGKTTS 120 (306)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEEcCCCChHHHH
Confidence 478999999999974
No 322
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=59.10 E-value=4.2 Score=34.87 Aligned_cols=15 Identities=7% Similarity=0.009 Sum_probs=13.1
Q ss_pred cEEEEcCCCchHHHH
Q psy16633 57 DVLVRARTGSGKTGA 71 (540)
Q Consensus 57 d~li~a~TGsGKT~a 71 (540)
-+++.|+.|||||..
T Consensus 3 ~i~l~G~~GsGKsT~ 17 (173)
T 3kb2_A 3 LIILEGPDCCFKSTV 17 (173)
T ss_dssp EEEEECSSSSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999974
No 323
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=58.98 E-value=44 Score=32.77 Aligned_cols=72 Identities=14% Similarity=0.240 Sum_probs=50.5
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhh----hhCCCCEEEEChHHHHHHHhcCcCCc
Q psy16633 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL----LVERPDIVVATPARALAHLKAKTLDL 165 (540)
Q Consensus 90 ~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~----l~~~~~Ivv~Tp~~l~~~l~~~~~~~ 165 (540)
.+.++||.++++.-+..+++.+... ++.+..+.|+.....+... ..+..+|+|+|.- -..++++
T Consensus 265 ~~~~~lvf~~~~~~~~~l~~~L~~~------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~------~~~Gidi 332 (412)
T 3fht_A 265 TIAQAMIFCHTRKTASWLAAELSKE------GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNV------CARGIDV 332 (412)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHHT------TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGG------GTSSCCC
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhC------CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCc------cccCCCc
Confidence 4568999999999999998888775 3455677777654443322 2457889999932 2345666
Q ss_pred cCCccEEEE
Q psy16633 166 KSSLEIVII 174 (540)
Q Consensus 166 ~~~l~~lVi 174 (540)
..+++||.
T Consensus 333 -p~~~~Vi~ 340 (412)
T 3fht_A 333 -EQVSVVIN 340 (412)
T ss_dssp -TTEEEEEE
T ss_pred -cCCCEEEE
Confidence 67888774
No 324
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=58.94 E-value=4.6 Score=36.26 Aligned_cols=20 Identities=15% Similarity=0.202 Sum_probs=15.8
Q ss_pred HHhcCCcEEEEcCCCchHHH
Q psy16633 51 LILQNKDVLVRARTGSGKTG 70 (540)
Q Consensus 51 ~il~gkd~li~a~TGsGKT~ 70 (540)
.+..|+-+.+.+|+|||||.
T Consensus 16 ~i~~Gei~~l~GpnGsGKST 35 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKST 35 (207)
T ss_dssp ---CCCEEEEECSTTSSHHH
T ss_pred CCCCCCEEEEECCCCCCHHH
Confidence 45678889999999999997
No 325
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=58.74 E-value=18 Score=33.20 Aligned_cols=55 Identities=16% Similarity=0.260 Sum_probs=41.8
Q ss_pred CCcEEEEecChhhHHHHHHHHHhC----CCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCC
Q psy16633 266 QGKTIIFVNTVDKCYKLKLYLEQF----KISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324 (540)
Q Consensus 266 ~~k~IIF~~s~~~~~~l~~~L~~~----~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~ 324 (540)
..++||.++++.-+..++..++++ ++.+..++|+.+.......+ ....+|+|+|.
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp 158 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATP 158 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECH
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECH
Confidence 358999999999998888877654 57788889887765443322 35689999998
No 326
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=58.72 E-value=7.5 Score=37.75 Aligned_cols=51 Identities=18% Similarity=0.085 Sum_probs=27.7
Q ss_pred HHHHHhc-----CCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCc
Q psy16633 48 AIPLILQ-----NKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPS 100 (540)
Q Consensus 48 ai~~il~-----gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt 100 (540)
.+..++. |.-+++.|++|+|||... +-++........ ....+.+++|+.-.
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la-~~la~~~~~~~~-~gg~~~~vlyi~~e 150 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLC-HQLSVNVQLPPE-KGGLSGKAVYIDTE 150 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHH-HHHHHHTTSCGG-GTCCSCEEEEEESS
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHH-HHHHHHHhcccc-cCCCCCeEEEEECC
Confidence 3555554 356899999999999743 333322211000 00115677887643
No 327
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=58.69 E-value=11 Score=32.78 Aligned_cols=23 Identities=22% Similarity=0.011 Sum_probs=15.7
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHH
Q psy16633 57 DVLVRARTGSGKTGAFAIPMIQKI 80 (540)
Q Consensus 57 d~li~a~TGsGKT~a~~ipil~~l 80 (540)
-+.+.++.|||||.. +..++..+
T Consensus 6 ~i~i~G~sGsGKTTl-~~~L~~~l 28 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTL-MEKWVAAA 28 (169)
T ss_dssp EEEEECCTTSSHHHH-HHHHHHHH
T ss_pred EEEEECCCCCCHHHH-HHHHHHhh
Confidence 477899999999973 33344443
No 328
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=58.60 E-value=16 Score=34.35 Aligned_cols=21 Identities=14% Similarity=0.131 Sum_probs=17.4
Q ss_pred HhcCCcEEEEcCCCchHHHHH
Q psy16633 52 ILQNKDVLVRARTGSGKTGAF 72 (540)
Q Consensus 52 il~gkd~li~a~TGsGKT~a~ 72 (540)
+..|.-+++.+|+|+|||...
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~ 47 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLA 47 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHH
Confidence 446788999999999999743
No 329
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=58.50 E-value=4.6 Score=40.11 Aligned_cols=17 Identities=41% Similarity=0.544 Sum_probs=14.9
Q ss_pred CCcEEEEcCCCchHHHH
Q psy16633 55 NKDVLVRARTGSGKTGA 71 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a 71 (540)
...+++.||+|+|||..
T Consensus 72 ~~~ill~Gp~GtGKT~l 88 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLM 88 (376)
T ss_dssp CCCEEEECCTTSSHHHH
T ss_pred CCCEEEECCCCCCHHHH
Confidence 45799999999999974
No 330
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=58.42 E-value=4.3 Score=41.68 Aligned_cols=18 Identities=33% Similarity=0.529 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCchHHHHH
Q psy16633 55 NKDVLVRARTGSGKTGAF 72 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a~ 72 (540)
++.+++.+|+|+|||..+
T Consensus 63 ~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp TCEEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCcCCHHHHH
Confidence 357999999999999743
No 331
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=58.28 E-value=8.1 Score=33.75 Aligned_cols=17 Identities=35% Similarity=0.341 Sum_probs=14.5
Q ss_pred CCcEEEEcCCCchHHHH
Q psy16633 55 NKDVLVRARTGSGKTGA 71 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a 71 (540)
|.-+++.++.|||||..
T Consensus 13 ~~~i~l~G~~GsGKsT~ 29 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTI 29 (186)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred CcEEEEEcCCCCCHHHH
Confidence 45689999999999974
No 332
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=57.86 E-value=4.1 Score=35.29 Aligned_cols=17 Identities=24% Similarity=0.384 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCchHHHH
Q psy16633 55 NKDVLVRARTGSGKTGA 71 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a 71 (540)
|+-+++.++.|||||..
T Consensus 8 g~~i~l~G~~GsGKSTl 24 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAV 24 (175)
T ss_dssp SEEEEEECSTTSCHHHH
T ss_pred CcEEEEEcCCCCCHHHH
Confidence 56689999999999974
No 333
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=57.35 E-value=5.6 Score=35.68 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=17.7
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHH
Q psy16633 55 NKDVLVRARTGSGKTGAFAIPMIQKII 81 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a~~ipil~~l~ 81 (540)
|.-+.|.+|+|||||. ++-++..++
T Consensus 22 g~~v~I~G~sGsGKST--l~~~l~~~~ 46 (208)
T 3c8u_A 22 RQLVALSGAPGSGKST--LSNPLAAAL 46 (208)
T ss_dssp CEEEEEECCTTSCTHH--HHHHHHHHH
T ss_pred CeEEEEECCCCCCHHH--HHHHHHHHH
Confidence 4568899999999996 334444444
No 334
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=57.24 E-value=4.6 Score=37.50 Aligned_cols=16 Identities=44% Similarity=0.532 Sum_probs=13.8
Q ss_pred CcEEEEcCCCchHHHH
Q psy16633 56 KDVLVRARTGSGKTGA 71 (540)
Q Consensus 56 kd~li~a~TGsGKT~a 71 (540)
+.+++.+|+|+|||..
T Consensus 50 ~g~ll~G~~G~GKTtl 65 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHL 65 (254)
T ss_dssp SEEEEECCTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 4599999999999963
No 335
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=56.76 E-value=7.7 Score=40.10 Aligned_cols=34 Identities=21% Similarity=0.269 Sum_probs=22.3
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEE
Q psy16633 56 KDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVL 97 (540)
Q Consensus 56 kd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil 97 (540)
.-+.+.|++|||||. ++-.|..++. ..+.++++.
T Consensus 294 eVI~LVGpNGSGKTT--Ll~~LAgll~------~~~G~V~l~ 327 (503)
T 2yhs_A 294 FVILMVGVNGVGKTT--TIGKLARQFE------QQGKSVMLA 327 (503)
T ss_dssp EEEEEECCTTSSHHH--HHHHHHHHHH------HTTCCEEEE
T ss_pred eEEEEECCCcccHHH--HHHHHHHHhh------hcCCeEEEe
Confidence 347899999999997 3444555544 234566665
No 336
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=56.71 E-value=7 Score=35.10 Aligned_cols=16 Identities=38% Similarity=0.447 Sum_probs=13.5
Q ss_pred cEEEEcCCCchHHHHH
Q psy16633 57 DVLVRARTGSGKTGAF 72 (540)
Q Consensus 57 d~li~a~TGsGKT~a~ 72 (540)
-.++.|+.|||||..+
T Consensus 7 i~l~tG~pGsGKT~~a 22 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKM 22 (199)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 3689999999999854
No 337
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=56.71 E-value=10 Score=34.21 Aligned_cols=18 Identities=33% Similarity=0.215 Sum_probs=15.1
Q ss_pred cCCcEEEEcCCCchHHHH
Q psy16633 54 QNKDVLVRARTGSGKTGA 71 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~a 71 (540)
.|.-+.+.+|+|||||..
T Consensus 24 ~G~~~~l~G~nGsGKSTl 41 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQL 41 (231)
T ss_dssp SSEEEEEEESTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 456689999999999973
No 338
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=56.65 E-value=4.7 Score=39.80 Aligned_cols=17 Identities=35% Similarity=0.452 Sum_probs=14.9
Q ss_pred CCcEEEEcCCCchHHHH
Q psy16633 55 NKDVLVRARTGSGKTGA 71 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a 71 (540)
.+.+++.+|+|+|||..
T Consensus 117 ~~~vLl~GppGtGKT~l 133 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLI 133 (357)
T ss_dssp CSEEEEESSTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 46799999999999974
No 339
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=56.62 E-value=18 Score=39.01 Aligned_cols=70 Identities=13% Similarity=0.124 Sum_probs=48.3
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCc
Q psy16633 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSL 169 (540)
Q Consensus 90 ~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l 169 (540)
.+.++||.||+++-++.+++.|... .+.+..+.|+...........+..+|+|||.- -...+++ . +
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~------g~~v~~lHg~eR~~v~~~F~~g~~~VLVaTdv------~e~GIDi-p-v 474 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRA------GKRVIQLNRKSYDTEYPKCKNGDWDFVITTDI------SEMGANF-G-A 474 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTT------TCCEEEECSSSHHHHGGGGGTCCCSEEEECGG------GGTTCCC-C-C
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhC------CCeEEEeChHHHHHHHHHHHCCCceEEEECch------hhcceee-C-C
Confidence 4678999999999999888887754 45677777754433444445567899999932 2344555 4 6
Q ss_pred cEEE
Q psy16633 170 EIVI 173 (540)
Q Consensus 170 ~~lV 173 (540)
++||
T Consensus 475 ~~VI 478 (673)
T 2wv9_A 475 SRVI 478 (673)
T ss_dssp SEEE
T ss_pred cEEE
Confidence 6655
No 340
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=56.51 E-value=5.9 Score=37.00 Aligned_cols=19 Identities=32% Similarity=0.492 Sum_probs=16.7
Q ss_pred hcCCcEEEEcCCCchHHHH
Q psy16633 53 LQNKDVLVRARTGSGKTGA 71 (540)
Q Consensus 53 l~gkd~li~a~TGsGKT~a 71 (540)
+.|+.+++.++.|||||..
T Consensus 46 l~g~~i~l~G~~GsGKSTl 64 (250)
T 3nwj_A 46 LNGRSMYLVGMMGSGKTTV 64 (250)
T ss_dssp HTTCCEEEECSTTSCHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3489999999999999974
No 341
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=56.37 E-value=3.9 Score=35.78 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=15.1
Q ss_pred cCCcEEEEcCCCchHHHH
Q psy16633 54 QNKDVLVRARTGSGKTGA 71 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~a 71 (540)
.|..+++.|+.|||||..
T Consensus 3 ~g~~I~l~G~~GsGKST~ 20 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQ 20 (186)
T ss_dssp CEEEEEEECCTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 355689999999999974
No 342
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=55.83 E-value=6.9 Score=37.75 Aligned_cols=26 Identities=8% Similarity=0.109 Sum_probs=19.3
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHH
Q psy16633 54 QNKDVLVRARTGSGKTGAFAIPMIQKII 81 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~a~~ipil~~l~ 81 (540)
.|+-+.+.+|+|||||. ++-+|..++
T Consensus 125 ~Ge~vaIvGpsGsGKST--Ll~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSM--LCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHH--HHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHH--HHHHHhhhc
Confidence 47779999999999996 444454443
No 343
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=55.73 E-value=14 Score=30.13 Aligned_cols=35 Identities=9% Similarity=0.132 Sum_probs=30.3
Q ss_pred CcEEEEe-cChhhHHHHHHHHHhCCCceEEeCCCCC
Q psy16633 267 GKTIIFV-NTVDKCYKLKLYLEQFKISTCVLNSELP 301 (540)
Q Consensus 267 ~k~IIF~-~s~~~~~~l~~~L~~~~~~~~~l~~~l~ 301 (540)
.++++|| .+-..+...+..|...|+.+..+.|++.
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~ 125 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYK 125 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHH
Confidence 6899999 5777888999999999999999999864
No 344
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=55.66 E-value=8.3 Score=32.66 Aligned_cols=15 Identities=33% Similarity=0.457 Sum_probs=13.0
Q ss_pred cEEEEcCCCchHHHH
Q psy16633 57 DVLVRARTGSGKTGA 71 (540)
Q Consensus 57 d~li~a~TGsGKT~a 71 (540)
-.+|.+|+|||||..
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 378999999999974
No 345
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=55.42 E-value=9.6 Score=33.79 Aligned_cols=40 Identities=20% Similarity=0.269 Sum_probs=24.2
Q ss_pred CCccEEEEcCcccc--ccCCcHHHHHHHHHhCCcccceeeEeeec
Q psy16633 167 SSLEIVIIDEADLV--FSFGYEDDMKAVLKFLPKLYQAILASATL 209 (540)
Q Consensus 167 ~~l~~lViDEah~l--~~~~~~~~l~~i~~~l~~~~q~il~SATl 209 (540)
...+++|+||+..+ .+..+...+..++.. ...+++-++|.
T Consensus 104 ~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~---~~~~ilgti~v 145 (189)
T 2i3b_A 104 PGQRVCVIDEIGKMELFSQLFIQAVRQTLST---PGTIILGTIPV 145 (189)
T ss_dssp SCCCCEEECCCSTTTTTCSHHHHHHHHHHHC---SSCCEEEECCC
T ss_pred cCCCEEEEeCCCccccccHHHHHHHHHHHhC---CCcEEEEEeec
Confidence 66789999998766 344455555555542 22344446665
No 346
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=55.42 E-value=2.8 Score=39.27 Aligned_cols=17 Identities=41% Similarity=0.474 Sum_probs=14.6
Q ss_pred CCcEEEEcCCCchHHHH
Q psy16633 55 NKDVLVRARTGSGKTGA 71 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a 71 (540)
.+.+++.||+|+|||..
T Consensus 44 ~~~vll~G~~GtGKT~l 60 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLL 60 (268)
T ss_dssp CSCCCCBCSSCSSHHHH
T ss_pred CceEEEECCCCCcHHHH
Confidence 35699999999999974
No 347
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=55.27 E-value=96 Score=33.18 Aligned_cols=78 Identities=19% Similarity=0.336 Sum_probs=54.7
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhh----hhCCCCEEEEChHHHHHHHhcCcCCc
Q psy16633 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL----LVERPDIVVATPARALAHLKAKTLDL 165 (540)
Q Consensus 90 ~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~----l~~~~~Ivv~Tp~~l~~~l~~~~~~~ 165 (540)
.+.++||.++|+.-+..+.+.+... ++.+..+.|+.....+... ..+..+|+|||. +-..++++
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~------gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~------~l~~GlDi 511 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEI------GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN------LLREGLDI 511 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT------TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC------CCSTTCCC
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhc------CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc------hhhCCccc
Confidence 5679999999999998888887765 3455666666543333222 235789999993 12345666
Q ss_pred cCCccEEEEcCcccc
Q psy16633 166 KSSLEIVIIDEADLV 180 (540)
Q Consensus 166 ~~~l~~lViDEah~l 180 (540)
..++++|+-+++..
T Consensus 512 -p~v~lVi~~d~d~~ 525 (661)
T 2d7d_A 512 -PEVSLVAILDADKE 525 (661)
T ss_dssp -TTEEEEEETTTTCC
T ss_pred -CCCCEEEEeCcccc
Confidence 78999999998843
No 348
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=55.16 E-value=4.5 Score=37.23 Aligned_cols=56 Identities=9% Similarity=0.115 Sum_probs=38.6
Q ss_pred CCcEEEEecChhhHHHHHHHHHhC----CCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCC
Q psy16633 266 QGKTIIFVNTVDKCYKLKLYLEQF----KISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324 (540)
Q Consensus 266 ~~k~IIF~~s~~~~~~l~~~L~~~----~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~ 324 (540)
+.++||.++++.-+..++..+.+. ++.+..++++..... .......+..+|+|+|.
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~I~v~Tp 157 (245)
T 3dkp_A 98 GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK---KFGPKSSKKFDILVTTP 157 (245)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHT---TTSTTSCCCCCEEEECH
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHH---HhhhhhcCCCCEEEECH
Confidence 447999999999999998888765 667777766532111 11122346789999997
No 349
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=55.14 E-value=6.3 Score=35.43 Aligned_cols=30 Identities=13% Similarity=0.052 Sum_probs=21.5
Q ss_pred ChHHHHHHHHHHhcCCcEEEEcCCCchHHHH
Q psy16633 41 PTLIQERAIPLILQNKDVLVRARTGSGKTGA 71 (540)
Q Consensus 41 pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a 71 (540)
.++.++.. ..+..|.-+++.++.|||||..
T Consensus 12 ~~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~ 41 (211)
T 1m7g_A 12 LTRSERTE-LRNQRGLTIWLTGLSASGKSTL 41 (211)
T ss_dssp CCHHHHHH-HHTSSCEEEEEECSTTSSHHHH
T ss_pred cCHHHhhc-ccCCCCCEEEEECCCCCCHHHH
Confidence 34555555 3345677799999999999973
No 350
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=55.10 E-value=5.8 Score=36.18 Aligned_cols=18 Identities=33% Similarity=0.470 Sum_probs=15.4
Q ss_pred hcCCcEEEEcCCCchHHH
Q psy16633 53 LQNKDVLVRARTGSGKTG 70 (540)
Q Consensus 53 l~gkd~li~a~TGsGKT~ 70 (540)
-.|+-+.+.||.|||||.
T Consensus 14 ~~G~ii~l~GpsGsGKST 31 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSS 31 (219)
T ss_dssp -CCCEEEEECCTTSCHHH
T ss_pred CCCcEEEEECCCCCCHHH
Confidence 357779999999999997
No 351
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=55.09 E-value=7.8 Score=42.27 Aligned_cols=26 Identities=35% Similarity=0.446 Sum_probs=21.3
Q ss_pred HHHHHHhcCCc--EEEEcCCCchHHHHH
Q psy16633 47 RAIPLILQNKD--VLVRARTGSGKTGAF 72 (540)
Q Consensus 47 ~ai~~il~gkd--~li~a~TGsGKT~a~ 72 (540)
..+..+++|.+ +++-+.||||||.+.
T Consensus 453 ~~v~~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 453 QLIQCSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCceEEEEccCCCCCchhhcc
Confidence 36777889987 778899999999763
No 352
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=54.86 E-value=5.2 Score=40.00 Aligned_cols=17 Identities=29% Similarity=0.427 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCchHHHH
Q psy16633 55 NKDVLVRARTGSGKTGA 71 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a 71 (540)
.+.+++.||+|+|||..
T Consensus 148 ~~~vLL~GppGtGKT~l 164 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTML 164 (389)
T ss_dssp CSEEEEESSTTSCHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 46899999999999974
No 353
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=54.80 E-value=4.8 Score=38.89 Aligned_cols=17 Identities=18% Similarity=0.415 Sum_probs=14.9
Q ss_pred cCCcEEEEcCCCchHHH
Q psy16633 54 QNKDVLVRARTGSGKTG 70 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~ 70 (540)
.|+-+.+.+|+|||||.
T Consensus 79 ~Ge~vaivG~sGsGKST 95 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKST 95 (306)
T ss_dssp TTCEEEEESSSCHHHHH
T ss_pred CCCEEEEECCCCchHHH
Confidence 36778999999999997
No 354
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=54.73 E-value=9 Score=37.19 Aligned_cols=15 Identities=27% Similarity=0.408 Sum_probs=12.8
Q ss_pred cEEEEcCCCchHHHH
Q psy16633 57 DVLVRARTGSGKTGA 71 (540)
Q Consensus 57 d~li~a~TGsGKT~a 71 (540)
-+.+.+++|+|||..
T Consensus 107 vI~ivG~~G~GKTT~ 121 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTS 121 (320)
T ss_dssp EEEEESSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 377889999999974
No 355
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.72 E-value=4.5 Score=41.39 Aligned_cols=47 Identities=19% Similarity=0.200 Sum_probs=26.7
Q ss_pred cCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHH
Q psy16633 22 TFTLFCIPLQAIAKL---GWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGA 71 (540)
Q Consensus 22 ~~~L~~~i~~~l~~~---g~~~pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a 71 (540)
+.|=-..+.+.|.+. -+.+|-.++..-+ .--+.+|+.||+|+|||+.
T Consensus 210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi---~pprGILLyGPPGTGKTlL 259 (467)
T 4b4t_H 210 DVGGCKDQIEKLREVVELPLLSPERFATLGI---DPPKGILLYGPPGTGKTLC 259 (467)
T ss_dssp SCTTCHHHHHHHHHHTHHHHHCHHHHHHHTC---CCCSEEEECSCTTSSHHHH
T ss_pred HhccHHHHHHHHHHHHHHHhcCHHHHHHCCC---CCCCceEeeCCCCCcHHHH
Confidence 444445556666543 1223333332211 1237899999999999973
No 356
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=54.56 E-value=22 Score=39.16 Aligned_cols=55 Identities=15% Similarity=0.137 Sum_probs=40.1
Q ss_pred CCcEEEEecChhhHHHHHHHHHhC----CCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCC
Q psy16633 266 QGKTIIFVNTVDKCYKLKLYLEQF----KISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324 (540)
Q Consensus 266 ~~k~IIF~~s~~~~~~l~~~L~~~----~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~ 324 (540)
++++||.|+++.-+......++++ ++.+..++|+.+...+...+. +..+|+|+|.
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp 354 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTP 354 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEch
Confidence 678999999999988888777765 899999999987665433222 3589999997
No 357
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=54.49 E-value=5.1 Score=36.99 Aligned_cols=17 Identities=29% Similarity=0.425 Sum_probs=15.0
Q ss_pred cCCcEEEEcCCCchHHH
Q psy16633 54 QNKDVLVRARTGSGKTG 70 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~ 70 (540)
.|+-+.+.+|.|||||.
T Consensus 30 ~Ge~~~iiG~nGsGKST 46 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKST 46 (235)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 46778999999999996
No 358
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=54.10 E-value=10 Score=36.23 Aligned_cols=51 Identities=8% Similarity=0.056 Sum_probs=37.7
Q ss_pred CcEEEEecChhhHHHHHHHHHhC-----CCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCC
Q psy16633 267 GKTIIFVNTVDKCYKLKLYLEQF-----KISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324 (540)
Q Consensus 267 ~k~IIF~~s~~~~~~l~~~L~~~-----~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~ 324 (540)
.++||.++++.-|..++..++.+ ++.+..+.++.....+ .....+|+|+|.
T Consensus 163 ~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP 218 (300)
T 3fmo_B 163 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTP 218 (300)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECH
T ss_pred ceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECH
Confidence 37999999999999988877764 4677777776543221 145678999998
No 359
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=54.09 E-value=87 Score=30.46 Aligned_cols=15 Identities=33% Similarity=0.410 Sum_probs=13.2
Q ss_pred cEEEEcCCCchHHHH
Q psy16633 57 DVLVRARTGSGKTGA 71 (540)
Q Consensus 57 d~li~a~TGsGKT~a 71 (540)
.+.+.+++|+|||..
T Consensus 81 ~I~i~G~~G~GKSTl 95 (355)
T 3p32_A 81 RVGITGVPGVGKSTA 95 (355)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 488999999999974
No 360
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=53.91 E-value=8.8 Score=29.95 Aligned_cols=36 Identities=17% Similarity=0.096 Sum_probs=31.4
Q ss_pred cCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCC
Q psy16633 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSEL 300 (540)
Q Consensus 265 ~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l 300 (540)
...++++||.+-..+...+..|...|+.+..+.|++
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCH
Confidence 345799999998889999999999999999998885
No 361
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=53.82 E-value=9.6 Score=29.57 Aligned_cols=36 Identities=14% Similarity=0.184 Sum_probs=31.6
Q ss_pred cCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCC
Q psy16633 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSEL 300 (540)
Q Consensus 265 ~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l 300 (540)
...++++||.+-..+...+..|.+.|+++..+.|++
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGM 90 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccH
Confidence 346899999998889999999999999989998885
No 362
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=53.78 E-value=5.3 Score=35.57 Aligned_cols=30 Identities=20% Similarity=0.247 Sum_probs=19.8
Q ss_pred ChHHHHHHHHHHhcCCcEEEEcCCCchHHHH
Q psy16633 41 PTLIQERAIPLILQNKDVLVRARTGSGKTGA 71 (540)
Q Consensus 41 pt~~Q~~ai~~il~gkd~li~a~TGsGKT~a 71 (540)
.+..+...+ ....|.-+.+.++.|||||..
T Consensus 12 ~~~~~~~~~-~~~~g~~i~l~G~sGsGKSTl 41 (200)
T 3uie_A 12 VEKVDRQRL-LDQKGCVIWVTGLSGSGKSTL 41 (200)
T ss_dssp CCHHHHHHH-HTSCCEEEEEECSTTSSHHHH
T ss_pred cCHHHHHHh-cCCCCeEEEEECCCCCCHHHH
Confidence 444444332 123466788999999999973
No 363
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=53.63 E-value=11 Score=28.76 Aligned_cols=35 Identities=17% Similarity=0.099 Sum_probs=30.8
Q ss_pred CcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCC
Q psy16633 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELP 301 (540)
Q Consensus 267 ~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~ 301 (540)
.++++||.+-..+...+..|.+.|+.+..+.|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 68999999988899999999999999888888864
No 364
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=53.56 E-value=4.5 Score=37.01 Aligned_cols=18 Identities=22% Similarity=0.340 Sum_probs=11.4
Q ss_pred cCCcEEEEcCCCchHHHH
Q psy16633 54 QNKDVLVRARTGSGKTGA 71 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~a 71 (540)
.|+-+.+.||+|||||..
T Consensus 26 ~G~ii~l~Gp~GsGKSTl 43 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTV 43 (231)
T ss_dssp CCCEEEEECSCC----CH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467789999999999973
No 365
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=53.47 E-value=5.3 Score=34.96 Aligned_cols=18 Identities=28% Similarity=0.272 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCchHHHHH
Q psy16633 55 NKDVLVRARTGSGKTGAF 72 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a~ 72 (540)
+.-+++.+++|||||...
T Consensus 3 ~~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 345889999999999743
No 366
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=53.15 E-value=20 Score=37.11 Aligned_cols=56 Identities=14% Similarity=0.145 Sum_probs=40.0
Q ss_pred CCcEEEEecChhhHHHHHHHHHhC----CCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCC
Q psy16633 266 QGKTIIFVNTVDKCYKLKLYLEQF----KISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE 325 (540)
Q Consensus 266 ~~k~IIF~~s~~~~~~l~~~L~~~----~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~ 325 (540)
.+++||.|+++.-+......+.++ ++.+..++|+.+...+...+. +..+|+|+|..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~ 114 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQ 114 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHH
Confidence 568999999999888888877765 899999999987655433222 23789999983
No 367
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=52.95 E-value=11 Score=33.75 Aligned_cols=55 Identities=9% Similarity=-0.002 Sum_probs=39.9
Q ss_pred CCcEEEEecChhhHHHHHHHHHhC--------CCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCC
Q psy16633 266 QGKTIIFVNTVDKCYKLKLYLEQF--------KISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324 (540)
Q Consensus 266 ~~k~IIF~~s~~~~~~l~~~L~~~--------~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~ 324 (540)
..++||.++++.-+..++..++++ ++.+..++|+.+....... ..+..+|+|+|.
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~Iiv~Tp 134 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEK----LNVQPHIVIGTP 134 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCC----CSSCCSEEEECH
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHH----cCCCCCEEEeCH
Confidence 458999999999988888877654 6788888988754432111 124678999997
No 368
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=52.91 E-value=8 Score=34.59 Aligned_cols=19 Identities=26% Similarity=0.048 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCchHHHHH
Q psy16633 54 QNKDVLVRARTGSGKTGAF 72 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~a~ 72 (540)
.|.-+++.+++|+|||...
T Consensus 19 ~G~~~~i~G~~GsGKTtl~ 37 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLA 37 (220)
T ss_dssp TTSEEEEECSTTSSHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 3566899999999999743
No 369
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=52.66 E-value=4.3 Score=39.12 Aligned_cols=16 Identities=31% Similarity=0.422 Sum_probs=14.5
Q ss_pred CcEEEEcCCCchHHHH
Q psy16633 56 KDVLVRARTGSGKTGA 71 (540)
Q Consensus 56 kd~li~a~TGsGKT~a 71 (540)
..+++.||+|+|||..
T Consensus 39 ~~vll~G~~GtGKT~l 54 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTL 54 (324)
T ss_dssp CCCEEECCTTCCCHHH
T ss_pred CcEEEECCCCCCHHHH
Confidence 6799999999999974
No 370
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=52.58 E-value=6 Score=35.17 Aligned_cols=16 Identities=31% Similarity=0.555 Sum_probs=14.1
Q ss_pred CcEEEEcCCCchHHHH
Q psy16633 56 KDVLVRARTGSGKTGA 71 (540)
Q Consensus 56 kd~li~a~TGsGKT~a 71 (540)
+-+++.|+.|||||..
T Consensus 19 ~~I~l~G~~GsGKSTl 34 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSV 34 (202)
T ss_dssp SCEEEECSTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4699999999999974
No 371
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=52.53 E-value=5.5 Score=34.91 Aligned_cols=17 Identities=24% Similarity=0.335 Sum_probs=14.3
Q ss_pred CCcEEEEcCCCchHHHH
Q psy16633 55 NKDVLVRARTGSGKTGA 71 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a 71 (540)
+.-+++.|+.|||||..
T Consensus 5 ~~~I~l~G~~GsGKST~ 21 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTL 21 (193)
T ss_dssp CEEEEEEESTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 44689999999999974
No 372
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=52.51 E-value=28 Score=30.66 Aligned_cols=59 Identities=10% Similarity=0.139 Sum_probs=43.6
Q ss_pred ChHHHHHHHHHHhcCC--cEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHH
Q psy16633 41 PTLIQERAIPLILQNK--DVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQ 106 (540)
Q Consensus 41 pt~~Q~~ai~~il~gk--d~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q 106 (540)
..+-|..++..++... -.++.++-|++||...+--++... ...|.++.++.|+..-...
T Consensus 35 ~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a-------~~~Gr~V~vLAp~~~s~~~ 95 (189)
T 2l8b_A 35 RTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMA-------REQGREVQIIAADRRSQMN 95 (189)
T ss_dssp CHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHH-------HHTTCCEEEECSTTHHHHH
T ss_pred cCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHH-------HhcCeEEEEEcCchHHHHH
Confidence 3477999999987754 378999999999987544433322 2478999999999875443
No 373
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=52.32 E-value=6.7 Score=38.14 Aligned_cols=17 Identities=41% Similarity=0.481 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCchHHHH
Q psy16633 55 NKDVLVRARTGSGKTGA 71 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a 71 (540)
...+++.||+|+|||..
T Consensus 45 ~~~vLl~G~~GtGKT~l 61 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTA 61 (350)
T ss_dssp GCCEEEECCGGGCTTHH
T ss_pred CceEEEECCCCccHHHH
Confidence 45799999999999974
No 374
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=52.30 E-value=19 Score=28.23 Aligned_cols=36 Identities=8% Similarity=0.037 Sum_probs=31.0
Q ss_pred cCCcEEEEecChhhHHHHHHHHHhCCCc-eEEeCCCC
Q psy16633 265 VQGKTIIFVNTVDKCYKLKLYLEQFKIS-TCVLNSEL 300 (540)
Q Consensus 265 ~~~k~IIF~~s~~~~~~l~~~L~~~~~~-~~~l~~~l 300 (540)
...++++||.+-..+...+..|...|+. +..+.||+
T Consensus 51 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~ 87 (106)
T 3hix_A 51 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGL 87 (106)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCH
Confidence 4568999999988899999999999995 88888885
No 375
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=52.29 E-value=6.6 Score=34.47 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCchHHHH
Q psy16633 54 QNKDVLVRARTGSGKTGA 71 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~a 71 (540)
.+.-+++.|+.|||||..
T Consensus 8 ~~~~I~l~G~~GsGKsT~ 25 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQ 25 (196)
T ss_dssp TSCEEEEEECTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 456799999999999974
No 376
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=52.14 E-value=21 Score=36.40 Aligned_cols=54 Identities=15% Similarity=0.122 Sum_probs=40.2
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEC
Q psy16633 91 ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVAT 150 (540)
Q Consensus 91 ~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~T 150 (540)
+.++||.+|++.-+..+++.+... ++.+..+.+............+..+|+|||
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~------g~~v~~lh~~~R~~~~~~f~~g~~~iLVaT 243 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRA------GKKVIQLNRKSYDTEYPKCKNGDWDFVITT 243 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT------TCCEEEESTTCCCCCGGGSSSCCCSEEEES
T ss_pred CCCEEEEeCChHHHHHHHHHHHhc------CCcEEecCHHHHHHHHhhccCCCceEEEEC
Confidence 568999999999999988888765 456677777644433444445678999999
No 377
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=51.99 E-value=10 Score=33.22 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=15.7
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHH
Q psy16633 57 DVLVRARTGSGKTGAFAIPMIQKI 80 (540)
Q Consensus 57 d~li~a~TGsGKT~a~~ipil~~l 80 (540)
.+.+.+|.|||||. ++-++..+
T Consensus 2 ~i~l~G~nGsGKTT--Ll~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTT--LVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHH--HHHHHHHH
T ss_pred EEEEECCCCCCHHH--HHHHHHHH
Confidence 46789999999997 33444444
No 378
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=51.96 E-value=16 Score=37.74 Aligned_cols=56 Identities=13% Similarity=0.265 Sum_probs=42.5
Q ss_pred CCcEEEEecChhhHHHHHHHHHhC----CCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCC
Q psy16633 266 QGKTIIFVNTVDKCYKLKLYLEQF----KISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE 325 (540)
Q Consensus 266 ~~k~IIF~~s~~~~~~l~~~L~~~----~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~ 325 (540)
.+++||.|+++.-+......+.++ ++.+..++|+.+...+...+. +..+|+|+|..
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~ 111 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQ 111 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHH
Confidence 668999999998888877777665 899999999986554432221 24789999983
No 379
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=51.95 E-value=4.8 Score=35.34 Aligned_cols=16 Identities=25% Similarity=0.426 Sum_probs=13.4
Q ss_pred CcEEEEcCCCchHHHH
Q psy16633 56 KDVLVRARTGSGKTGA 71 (540)
Q Consensus 56 kd~li~a~TGsGKT~a 71 (540)
+-+++.+|+|||||..
T Consensus 3 ~ii~l~G~~GaGKSTl 18 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTT 18 (189)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCcHHHH
Confidence 3478999999999973
No 380
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=51.82 E-value=45 Score=32.39 Aligned_cols=76 Identities=12% Similarity=0.230 Sum_probs=52.7
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhh----hhCCCCEEEEChHHHHHHHhcCcCCc
Q psy16633 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL----LVERPDIVVATPARALAHLKAKTLDL 165 (540)
Q Consensus 90 ~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~----l~~~~~Ivv~Tp~~l~~~l~~~~~~~ 165 (540)
.+.++||.++++.-+..+++.++.. +..+..+.|+.....+... ..+..+|+|+|.- -..++++
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~------~~~Gidi 309 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSE------GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNV------LARGIDI 309 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHT------TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGG------GSSSCCC
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhc------CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECCh------hhcCCCc
Confidence 4678999999999999988888765 3455677777654443322 2356789999932 2445666
Q ss_pred cCCccEEEEcCcc
Q psy16633 166 KSSLEIVIIDEAD 178 (540)
Q Consensus 166 ~~~l~~lViDEah 178 (540)
..+++||.-...
T Consensus 310 -p~~~~Vi~~~~p 321 (395)
T 3pey_A 310 -PTVSMVVNYDLP 321 (395)
T ss_dssp -TTEEEEEESSCC
T ss_pred -ccCCEEEEcCCC
Confidence 778888865544
No 381
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=51.66 E-value=8.5 Score=33.55 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=16.7
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHHh
Q psy16633 57 DVLVRARTGSGKTGAFAIPMIQKIIN 82 (540)
Q Consensus 57 d~li~a~TGsGKT~a~~ipil~~l~~ 82 (540)
-+.+.+++|||||. ++-++..++.
T Consensus 4 ~v~IvG~SGsGKST--L~~~L~~~~~ 27 (171)
T 2f1r_A 4 ILSIVGTSDSGKTT--LITRMMPILR 27 (171)
T ss_dssp EEEEEESCHHHHHH--HHHHHHHHHH
T ss_pred EEEEECCCCCCHHH--HHHHHHHHhh
Confidence 46789999999996 3444444444
No 382
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=51.66 E-value=6.4 Score=37.11 Aligned_cols=16 Identities=44% Similarity=0.532 Sum_probs=13.8
Q ss_pred CcEEEEcCCCchHHHH
Q psy16633 56 KDVLVRARTGSGKTGA 71 (540)
Q Consensus 56 kd~li~a~TGsGKT~a 71 (540)
+.+++.+|+|+|||..
T Consensus 74 ~gvll~Gp~GtGKTtl 89 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHL 89 (278)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred CeEEEECCCcChHHHH
Confidence 4599999999999963
No 383
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=51.57 E-value=6.4 Score=41.91 Aligned_cols=15 Identities=20% Similarity=0.448 Sum_probs=13.8
Q ss_pred cEEEEcCCCchHHHH
Q psy16633 57 DVLVRARTGSGKTGA 71 (540)
Q Consensus 57 d~li~a~TGsGKT~a 71 (540)
++++.||+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999973
No 384
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=51.46 E-value=11 Score=33.41 Aligned_cols=16 Identities=25% Similarity=0.131 Sum_probs=13.6
Q ss_pred CcEEEEcCCCchHHHH
Q psy16633 56 KDVLVRARTGSGKTGA 71 (540)
Q Consensus 56 kd~li~a~TGsGKT~a 71 (540)
.-+.+.++.|||||..
T Consensus 23 ~~i~i~G~~GsGKstl 38 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTL 38 (201)
T ss_dssp EEEEEEECTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4488999999999973
No 385
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=51.40 E-value=8.1 Score=33.53 Aligned_cols=15 Identities=27% Similarity=0.346 Sum_probs=13.0
Q ss_pred cEEEEcCCCchHHHH
Q psy16633 57 DVLVRARTGSGKTGA 71 (540)
Q Consensus 57 d~li~a~TGsGKT~a 71 (540)
-.+|.+++|||||..
T Consensus 28 ~~~i~G~NGsGKStl 42 (182)
T 3kta_A 28 FTAIVGANGSGKSNI 42 (182)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred cEEEECCCCCCHHHH
Confidence 478999999999973
No 386
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=51.31 E-value=7.4 Score=34.42 Aligned_cols=18 Identities=22% Similarity=0.248 Sum_probs=15.4
Q ss_pred cCCcEEEEcCCCchHHHH
Q psy16633 54 QNKDVLVRARTGSGKTGA 71 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~a 71 (540)
.|.-+++.|+.|||||..
T Consensus 3 ~~~~I~l~G~~GsGKsT~ 20 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQ 20 (204)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 466789999999999974
No 387
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=51.22 E-value=6.4 Score=40.18 Aligned_cols=17 Identities=24% Similarity=0.370 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCchHHHH
Q psy16633 55 NKDVLVRARTGSGKTGA 71 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a 71 (540)
.+.+++.||+|+|||..
T Consensus 167 ~~~vLL~GppGtGKT~l 183 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYL 183 (444)
T ss_dssp CSEEEEECSTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 36799999999999974
No 388
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=51.14 E-value=44 Score=29.21 Aligned_cols=48 Identities=17% Similarity=0.194 Sum_probs=39.3
Q ss_pred CCcEEEEecCh-----------hhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhc
Q psy16633 266 QGKTIIFVNTV-----------DKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQ 314 (540)
Q Consensus 266 ~~k~IIF~~s~-----------~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~ 314 (540)
.+.+|||.|.. .++..|...|+++|+.+.+ +.+++..+-...+++|.+
T Consensus 43 ~g~ALIInn~~f~~~~~R~G~~~Da~~L~~~f~~LgF~V~~-~~dlt~~em~~~l~~f~~ 101 (178)
T 2h54_A 43 TRLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVDV-KKNLTASDMTTELEAFAH 101 (178)
T ss_dssp CCEEEEEECCCCSSSCCCTTHHHHHHHHHHHHHHTTCEEEE-EESCCHHHHHHHHHHHHT
T ss_pred CCEEEEEehhhcCCCccCCCCHHHHHHHHHHHHHCCCEEEE-ecCCCHHHHHHHHHHHHh
Confidence 45688888763 6799999999999999865 457889988999999964
No 389
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=50.67 E-value=37 Score=37.40 Aligned_cols=54 Identities=9% Similarity=0.017 Sum_probs=42.4
Q ss_pred cCCcEEEEecChhhHHHHHHHHHh----CCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCC
Q psy16633 265 VQGKTIIFVNTVDKCYKLKLYLEQ----FKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324 (540)
Q Consensus 265 ~~~k~IIF~~s~~~~~~l~~~L~~----~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~ 324 (540)
.+..++|.++|+.-|.+.+..+.. .|+++..+.|+++...|.... ..+|+|+|+
T Consensus 114 ~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTp 171 (853)
T 2fsf_A 114 TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTN 171 (853)
T ss_dssp TSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEH
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECC
Confidence 455899999999988777766544 589999999999987654433 379999997
No 390
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=50.65 E-value=50 Score=28.87 Aligned_cols=58 Identities=14% Similarity=0.150 Sum_probs=45.0
Q ss_pred cCCcEEEEecCh--------------hhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcC---CccEEEeC
Q psy16633 265 VQGKTIIFVNTV--------------DKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQG---LYDVIIAS 323 (540)
Q Consensus 265 ~~~k~IIF~~s~--------------~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g---~~~iLIaT 323 (540)
..|.+|||.+.. .+++.|...|+.+|+.+.+++ +++..+-...+++|.+. .++.+|+.
T Consensus 43 ~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LGF~V~~~~-dlt~~em~~~l~~~~~~dh~~~dc~vvv 117 (179)
T 3p45_A 43 RRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFN-DLKAEELLLKIHEVSTVSHADADCFVCV 117 (179)
T ss_dssp BCCEEEEEECCSCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEEEEE-SCCHHHHHHHHHHHHTSCCTTBSCEEEE
T ss_pred ccCEEEEEeCcccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEe-CCCHHHHHHHHHHHhhhhcCCCCEEEEE
Confidence 467799998753 479999999999999987665 79999999999999763 34555544
No 391
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=50.60 E-value=28 Score=32.74 Aligned_cols=49 Identities=12% Similarity=0.110 Sum_probs=40.3
Q ss_pred cCCcEEEEec---------------------ChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhc
Q psy16633 265 VQGKTIIFVN---------------------TVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQ 314 (540)
Q Consensus 265 ~~~k~IIF~~---------------------s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~ 314 (540)
++|-+|||.| +..+++.|...|+.+|+.+.+ +.+++..+-...+++|.+
T Consensus 16 ~rG~aLIInn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~~-~~dlt~~em~~~l~~~~~ 85 (271)
T 3h11_B 16 PRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIKP-HDDCTVEQIYEILKIYQL 85 (271)
T ss_dssp SCCEEEEEECCCCSHHHHTCGGGTTCCCCTTHHHHHHHHHHHHHHTTCEEEE-EESCCHHHHHHHHHHHHH
T ss_pred CCCEEEEEEchhcCcccccccccccCCCCCCcHHHHHHHHHHHHHCCCEEEE-EeCCCHHHHHHHHHHHHH
Confidence 4577899887 235799999999999999764 557999999999999965
No 392
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=50.57 E-value=7.2 Score=34.30 Aligned_cols=18 Identities=28% Similarity=0.385 Sum_probs=15.3
Q ss_pred cCCcEEEEcCCCchHHHH
Q psy16633 54 QNKDVLVRARTGSGKTGA 71 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~a 71 (540)
.+.-+++.|++|||||..
T Consensus 11 ~~~~I~l~G~~GsGKsT~ 28 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQ 28 (199)
T ss_dssp HSCEEEEEECTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 356799999999999974
No 393
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=50.47 E-value=7.6 Score=33.53 Aligned_cols=16 Identities=31% Similarity=0.470 Sum_probs=13.8
Q ss_pred CcEEEEcCCCchHHHH
Q psy16633 56 KDVLVRARTGSGKTGA 71 (540)
Q Consensus 56 kd~li~a~TGsGKT~a 71 (540)
+.+++.++.|||||..
T Consensus 5 ~~i~i~G~~GsGKsTl 20 (175)
T 1via_A 5 KNIVFIGFMGSGKSTL 20 (175)
T ss_dssp CCEEEECCTTSCHHHH
T ss_pred CEEEEEcCCCCCHHHH
Confidence 3689999999999974
No 394
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=50.44 E-value=6.1 Score=35.32 Aligned_cols=18 Identities=28% Similarity=0.193 Sum_probs=14.5
Q ss_pred cCCcEEEEcCCCchHHHH
Q psy16633 54 QNKDVLVRARTGSGKTGA 71 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~a 71 (540)
.|.-+.+.||+|||||..
T Consensus 5 ~~~~i~i~G~~GsGKSTl 22 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTL 22 (211)
T ss_dssp CCEEEEEEESTTSSHHHH
T ss_pred CcEEEEEECCCCCCHHHH
Confidence 345578999999999973
No 395
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=50.03 E-value=7.3 Score=35.42 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCchHHHH
Q psy16633 55 NKDVLVRARTGSGKTGA 71 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a 71 (540)
+..+++.|++|||||..
T Consensus 7 ~~~I~l~G~~GsGKsT~ 23 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTV 23 (227)
T ss_dssp CCEEEEEECTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45699999999999974
No 396
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=49.98 E-value=7 Score=35.07 Aligned_cols=16 Identities=19% Similarity=0.385 Sum_probs=13.4
Q ss_pred cEEEEcCCCchHHHHH
Q psy16633 57 DVLVRARTGSGKTGAF 72 (540)
Q Consensus 57 d~li~a~TGsGKT~a~ 72 (540)
.+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQA 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999743
No 397
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=49.98 E-value=6.8 Score=34.00 Aligned_cols=18 Identities=28% Similarity=0.412 Sum_probs=15.0
Q ss_pred cCCcEEEEcCCCchHHHH
Q psy16633 54 QNKDVLVRARTGSGKTGA 71 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~a 71 (540)
.|.-+++.++.|||||..
T Consensus 4 ~g~~i~l~G~~GsGKST~ 21 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTV 21 (179)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 456688999999999973
No 398
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=49.85 E-value=8.3 Score=33.55 Aligned_cols=17 Identities=24% Similarity=0.257 Sum_probs=14.2
Q ss_pred CcEEEEcCCCchHHHHH
Q psy16633 56 KDVLVRARTGSGKTGAF 72 (540)
Q Consensus 56 kd~li~a~TGsGKT~a~ 72 (540)
..+++.++.|||||...
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIG 19 (184)
T ss_dssp CSEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45899999999999743
No 399
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=49.72 E-value=6.9 Score=38.79 Aligned_cols=16 Identities=31% Similarity=0.565 Sum_probs=13.5
Q ss_pred cEEEEcCCCchHHHHH
Q psy16633 57 DVLVRARTGSGKTGAF 72 (540)
Q Consensus 57 d~li~a~TGsGKT~a~ 72 (540)
-.+|.+|||||||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 5789999999999743
No 400
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=49.67 E-value=14 Score=35.91 Aligned_cols=41 Identities=10% Similarity=0.148 Sum_probs=27.4
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHH
Q psy16633 57 DVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKEL 103 (540)
Q Consensus 57 d~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~L 103 (540)
-+++.+|+|+|||.. ++.++....+. ..+.+++++..-..+
T Consensus 30 iteI~G~pGsGKTtL-~Lq~~~~~~~~-----g~g~~vlyId~E~s~ 70 (333)
T 3io5_A 30 LLILAGPSKSFKSNF-GLTMVSSYMRQ-----YPDAVCLFYDSEFGI 70 (333)
T ss_dssp EEEEEESSSSSHHHH-HHHHHHHHHHH-----CTTCEEEEEESSCCC
T ss_pred eEEEECCCCCCHHHH-HHHHHHHHHhc-----CCCceEEEEeccchh
Confidence 589999999999974 44444443321 236788888765554
No 401
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=49.55 E-value=8.2 Score=33.06 Aligned_cols=16 Identities=19% Similarity=0.382 Sum_probs=13.8
Q ss_pred CcEEEEcCCCchHHHH
Q psy16633 56 KDVLVRARTGSGKTGA 71 (540)
Q Consensus 56 kd~li~a~TGsGKT~a 71 (540)
+-+++.++.|||||..
T Consensus 3 ~~I~l~G~~GsGKsT~ 18 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTV 18 (173)
T ss_dssp CCEEEESCTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 4589999999999974
No 402
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=49.51 E-value=6.8 Score=36.44 Aligned_cols=17 Identities=35% Similarity=0.528 Sum_probs=15.1
Q ss_pred cCCcEEEEcCCCchHHH
Q psy16633 54 QNKDVLVRARTGSGKTG 70 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~ 70 (540)
.|+-+.+.+|.|||||.
T Consensus 34 ~Ge~~~i~G~nGsGKST 50 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKST 50 (247)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 46778999999999997
No 403
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=49.50 E-value=20 Score=36.48 Aligned_cols=69 Identities=16% Similarity=0.164 Sum_probs=47.4
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEEChHHHHHHHhcCcCCccCCcc
Q psy16633 91 ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLE 170 (540)
Q Consensus 91 ~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~l~ 170 (540)
+.++||.+|++.-+.++++.+... ++.+..+.++...........+..+|+|||.- -..++++ .. .
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~------g~~~~~lh~~~~~~~~~~f~~g~~~vLVaT~v------~~~GiDi-p~-~ 253 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKS------GKRVIQLSRKTFDTEYPKTKLTDWDFVVTTDI------SEMGANF-RA-G 253 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT------TCCEEEECTTTHHHHGGGGGSSCCSEEEECGG------GGSSCCC-CC-S
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHc------CCeEEECCHHHHHHHHHhhccCCceEEEECCH------HHhCcCC-CC-C
Confidence 458999999999999888887754 45666777766544444445568899999932 2344555 44 5
Q ss_pred EEE
Q psy16633 171 IVI 173 (540)
Q Consensus 171 ~lV 173 (540)
+||
T Consensus 254 ~VI 256 (451)
T 2jlq_A 254 RVI 256 (451)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 404
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=49.46 E-value=31 Score=29.83 Aligned_cols=58 Identities=14% Similarity=0.156 Sum_probs=44.5
Q ss_pred cCCcEEEEecCh--------------hhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhc----CCccEEEeC
Q psy16633 265 VQGKTIIFVNTV--------------DKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQ----GLYDVIIAS 323 (540)
Q Consensus 265 ~~~k~IIF~~s~--------------~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~----g~~~iLIaT 323 (540)
..|.+|||.|.. .+++.|...|+++|+.+. .+.+++..+-...+++|.+ ...+.+|+.
T Consensus 32 ~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~~~~~~dh~~~dc~vv~ 107 (167)
T 1pyo_A 32 PRGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYDVH-VLCDQTAQEMQEKLQNFAQLPAHRVTDSCIVA 107 (167)
T ss_dssp SSEEEEEEECCCCCSSSCSCCCTTHHHHHHHHHHHHHHTTEEEE-EEESCCHHHHHHHHHHHHTCGGGGTSSEEEEE
T ss_pred CceEEEEEeCcccCCCCCCccCCCcHHHHHHHHHHHHHCCCEEE-EeeCCCHHHHHHHHHHhhhhhhccCCCEEEEE
Confidence 456788888752 279999999999999985 4568899999999999976 345655554
No 405
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=49.31 E-value=8.2 Score=34.81 Aligned_cols=17 Identities=18% Similarity=0.317 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCchHHHH
Q psy16633 55 NKDVLVRARTGSGKTGA 71 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a 71 (540)
+..+++.|+.|||||..
T Consensus 4 ~~~I~l~G~~GsGKsT~ 20 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQ 20 (220)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45789999999999974
No 406
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=49.06 E-value=28 Score=33.73 Aligned_cols=23 Identities=9% Similarity=0.307 Sum_probs=16.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHHh
Q psy16633 58 VLVRARTGSGKTGAFAIPMIQKIIN 82 (540)
Q Consensus 58 ~li~a~TGsGKT~a~~ipil~~l~~ 82 (540)
+.+.||+|||||.. +-++..++.
T Consensus 95 igI~GpsGSGKSTl--~~~L~~ll~ 117 (321)
T 3tqc_A 95 IGIAGSVAVGKSTT--SRVLKALLS 117 (321)
T ss_dssp EEEECCTTSSHHHH--HHHHHHHHT
T ss_pred EEEECCCCCCHHHH--HHHHHHHhc
Confidence 78999999999973 345555543
No 407
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=48.89 E-value=35 Score=33.27 Aligned_cols=55 Identities=4% Similarity=0.067 Sum_probs=43.4
Q ss_pred cCCcEEEEecChhhHHHHHHHHHh----CCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCC
Q psy16633 265 VQGKTIIFVNTVDKCYKLKLYLEQ----FKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324 (540)
Q Consensus 265 ~~~k~IIF~~s~~~~~~l~~~L~~----~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~ 324 (540)
...++||.|+++.-+..++..+.+ .++.+..++|+.+.......+. ..+|+|+|.
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~ 146 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTP 146 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECH
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECH
Confidence 356899999999998888887765 3688899999988776555443 478999997
No 408
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=48.69 E-value=12 Score=35.27 Aligned_cols=58 Identities=14% Similarity=0.075 Sum_probs=47.3
Q ss_pred cCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcC----CccEEEeC
Q psy16633 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQG----LYDVIIAS 323 (540)
Q Consensus 265 ~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g----~~~iLIaT 323 (540)
..|-+|||.|.-.+++.|...|+.+|+.+.++ .+++..+-...+++|.+. ..+.+|+.
T Consensus 42 ~rG~~LIinn~~~D~~~L~~~f~~LgF~V~~~-~dlt~~em~~~l~~~~~~~dh~~~d~~v~~ 103 (272)
T 3h11_A 42 PLGICLIIDCIGNETELLRDTFTSLGYEVQKF-LHLSMHGISQILGQFACMPEHRDYDSFVCV 103 (272)
T ss_dssp SSEEEEEEESSCCCCSHHHHHHHHHTEEEEEE-ESCBHHHHHHHHHHHHTCGGGGGCSEEEEE
T ss_pred cceEEEEECCchHHHHHHHHHHHHCCCEEEEe-eCCCHHHHHHHHHHHHhccccCCCCEEEEE
Confidence 56789999999999999999999999997754 578999999999999753 34555444
No 409
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=48.48 E-value=9.6 Score=39.16 Aligned_cols=17 Identities=24% Similarity=0.429 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCchHHHH
Q psy16633 55 NKDVLVRARTGSGKTGA 71 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a 71 (540)
..++++.||+|+|||..
T Consensus 201 ~~~~LL~G~pG~GKT~l 217 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAI 217 (468)
T ss_dssp SCEEEEESCTTTTTHHH
T ss_pred CCCeEEECCCCCCHHHH
Confidence 35799999999999974
No 410
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=48.46 E-value=8.2 Score=33.02 Aligned_cols=17 Identities=24% Similarity=0.366 Sum_probs=14.6
Q ss_pred CcEEEEcCCCchHHHHH
Q psy16633 56 KDVLVRARTGSGKTGAF 72 (540)
Q Consensus 56 kd~li~a~TGsGKT~a~ 72 (540)
+++++.++.|||||.+.
T Consensus 8 ~~i~l~G~~GsGKSTva 24 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLA 24 (168)
T ss_dssp CEEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 57899999999999753
No 411
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=48.46 E-value=7.4 Score=36.80 Aligned_cols=15 Identities=40% Similarity=0.503 Sum_probs=13.5
Q ss_pred CcEEEEcCCCchHHH
Q psy16633 56 KDVLVRARTGSGKTG 70 (540)
Q Consensus 56 kd~li~a~TGsGKT~ 70 (540)
+.+++.+|+|+|||.
T Consensus 45 ~GvlL~Gp~GtGKTt 59 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTL 59 (274)
T ss_dssp SEEEEESSTTSCHHH
T ss_pred CeEEEECCCCCcHHH
Confidence 449999999999997
No 412
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=48.45 E-value=7.8 Score=35.01 Aligned_cols=16 Identities=19% Similarity=0.341 Sum_probs=13.7
Q ss_pred CcEEEEcCCCchHHHH
Q psy16633 56 KDVLVRARTGSGKTGA 71 (540)
Q Consensus 56 kd~li~a~TGsGKT~a 71 (540)
..+.+.|++|||||..
T Consensus 6 ~~i~i~G~~GsGKSTl 21 (227)
T 1cke_A 6 PVITIDGPSGAGKGTL 21 (227)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4588999999999974
No 413
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=48.41 E-value=57 Score=34.99 Aligned_cols=77 Identities=18% Similarity=0.261 Sum_probs=53.2
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchh----hhhCCCCEEEEChHHHHHHHhcCcCCc
Q psy16633 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEP----LLVERPDIVVATPARALAHLKAKTLDL 165 (540)
Q Consensus 90 ~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~----~l~~~~~Ivv~Tp~~l~~~l~~~~~~~ 165 (540)
.+.++||.++|+.-+..+.+.+... ++.+..+.|+.....+.. ...+..+|+|||.- -..++++
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~------gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~------l~~GlDi 505 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEH------GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINL------LREGLDI 505 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT------TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCC------CCTTCCC
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhc------CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccCh------hhcCccC
Confidence 5679999999999998888887765 345566666654333322 22356899999921 2345666
Q ss_pred cCCccEEEEcCccc
Q psy16633 166 KSSLEIVIIDEADL 179 (540)
Q Consensus 166 ~~~l~~lViDEah~ 179 (540)
..++++|+=+++.
T Consensus 506 -p~v~lVI~~d~d~ 518 (664)
T 1c4o_A 506 -PEVSLVAILDADK 518 (664)
T ss_dssp -TTEEEEEETTTTS
T ss_pred -CCCCEEEEeCCcc
Confidence 7789898888873
No 414
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=48.41 E-value=7.5 Score=33.89 Aligned_cols=15 Identities=27% Similarity=0.291 Sum_probs=13.0
Q ss_pred cEEEEcCCCchHHHH
Q psy16633 57 DVLVRARTGSGKTGA 71 (540)
Q Consensus 57 d~li~a~TGsGKT~a 71 (540)
-+++.|+.|||||..
T Consensus 3 ~I~i~G~~GsGKsT~ 17 (194)
T 1nks_A 3 IGIVTGIPGVGKSTV 17 (194)
T ss_dssp EEEEEECTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999973
No 415
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=48.22 E-value=7.3 Score=36.94 Aligned_cols=17 Identities=18% Similarity=0.309 Sum_probs=14.9
Q ss_pred cCCcEEEEcCCCchHHH
Q psy16633 54 QNKDVLVRARTGSGKTG 70 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~ 70 (540)
.|+-+.+.+|.|||||.
T Consensus 33 ~Ge~~~iiGpnGsGKST 49 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKST 49 (275)
T ss_dssp TTSEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 46778999999999997
No 416
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=48.16 E-value=7 Score=34.87 Aligned_cols=18 Identities=28% Similarity=0.189 Sum_probs=14.9
Q ss_pred cCCcEEEEcCCCchHHHH
Q psy16633 54 QNKDVLVRARTGSGKTGA 71 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~a 71 (540)
.+.-+.+.+++|||||..
T Consensus 20 ~~~~i~i~G~~GsGKSTl 37 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTL 37 (207)
T ss_dssp CCEEEEEEESTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 455688999999999973
No 417
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=48.15 E-value=10 Score=36.64 Aligned_cols=33 Identities=27% Similarity=0.364 Sum_probs=23.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCc
Q psy16633 58 VLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPS 100 (540)
Q Consensus 58 ~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt 100 (540)
+++.++.|||||.. +..++.. ..+.++.|+.|.
T Consensus 7 ~~i~G~~GaGKTTl-----l~~l~~~-----~~~~~~aVi~~d 39 (318)
T 1nij_A 7 TLLTGFLGAGKTTL-----LRHILNE-----QHGYKIAVIENE 39 (318)
T ss_dssp EEEEESSSSSCHHH-----HHHHHHS-----CCCCCEEEECSS
T ss_pred EEEEecCCCCHHHH-----HHHHHhh-----cCCCcEEEEEec
Confidence 68999999999973 2333321 256778888885
No 418
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=48.12 E-value=6.5 Score=37.52 Aligned_cols=16 Identities=38% Similarity=0.565 Sum_probs=13.7
Q ss_pred CcEEEEcCCCchHHHH
Q psy16633 56 KDVLVRARTGSGKTGA 71 (540)
Q Consensus 56 kd~li~a~TGsGKT~a 71 (540)
.-+++.||.|||||..
T Consensus 34 ~livl~G~sGsGKSTl 49 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSL 49 (287)
T ss_dssp EEEEEECCTTSCTHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3489999999999974
No 419
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=48.05 E-value=7.9 Score=34.77 Aligned_cols=16 Identities=19% Similarity=0.297 Sum_probs=13.4
Q ss_pred cEEEEcCCCchHHHHH
Q psy16633 57 DVLVRARTGSGKTGAF 72 (540)
Q Consensus 57 d~li~a~TGsGKT~a~ 72 (540)
.+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQG 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999743
No 420
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=48.05 E-value=44 Score=28.74 Aligned_cols=58 Identities=12% Similarity=0.098 Sum_probs=43.7
Q ss_pred cCCcEEEEecC---------------------hhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcC---CccEE
Q psy16633 265 VQGKTIIFVNT---------------------VDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQG---LYDVI 320 (540)
Q Consensus 265 ~~~k~IIF~~s---------------------~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g---~~~iL 320 (540)
.+|.+|||.+. ..++..|...|+.+|+.+.+ +.+++..+-...+++|.+. ..+.+
T Consensus 22 ~rG~~LIinn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~-~~dlt~~em~~~l~~~~~~dh~~~dc~ 100 (164)
T 1qtn_A 22 PRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIKP-HDDCTVEQIYEILKIYQLMDHSNMDCF 100 (164)
T ss_dssp SCCEEEEEECCCCHHHHHHCGGGTTCCCCTTHHHHHHHHHHHHHHTTCEEEE-EESCCHHHHHHHHHHHHHSCCTTCSCE
T ss_pred CceEEEEEechhcCCccccccccccCcCCCCcHHHHHHHHHHHHHCCCEEEE-ecCCCHHHHHHHHHHHHHhhccCCCEE
Confidence 45778888863 45789999999999999864 5678888888999999643 35555
Q ss_pred EeC
Q psy16633 321 IAS 323 (540)
Q Consensus 321 IaT 323 (540)
|+.
T Consensus 101 vv~ 103 (164)
T 1qtn_A 101 ICC 103 (164)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
No 421
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=47.98 E-value=8.4 Score=35.22 Aligned_cols=18 Identities=17% Similarity=0.302 Sum_probs=15.1
Q ss_pred cCCcEEEEcCCCchHHHH
Q psy16633 54 QNKDVLVRARTGSGKTGA 71 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~a 71 (540)
.+..+++.+++|||||..
T Consensus 15 ~~~~I~l~G~~GsGKsT~ 32 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQ 32 (233)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 346799999999999974
No 422
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=47.94 E-value=86 Score=34.31 Aligned_cols=77 Identities=9% Similarity=0.137 Sum_probs=52.3
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHHHhhc-----CCCceEEEeecCcccccchhhhh---------CCCCEEEEChHHHH
Q psy16633 90 QETKALVLSPSKELCNQLHKNIQELTMKC-----SRDVKCVDISEQVDVSVQEPLLV---------ERPDIVVATPARAL 155 (540)
Q Consensus 90 ~~~~vlil~Pt~~La~q~~~~l~~l~~~~-----~~~i~~~~~~~~~~~~~~~~~l~---------~~~~Ivv~Tp~~l~ 155 (540)
.+..+||.+|++.-+..+++.+....... ...+.+..+.|+.....+...+. +...|+|||.-
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~i--- 378 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNI--- 378 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTH---
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcH---
Confidence 57799999999999999998888643221 24677888888876655554432 34579999932
Q ss_pred HHHhcCcCCccCCccEEE
Q psy16633 156 AHLKAKTLDLKSSLEIVI 173 (540)
Q Consensus 156 ~~l~~~~~~~~~~l~~lV 173 (540)
-..++++ ..+.+||
T Consensus 379 ---ae~GidI-p~v~~VI 392 (773)
T 2xau_A 379 ---AETSLTI-DGIVYVV 392 (773)
T ss_dssp ---HHHTCCC-TTEEEEE
T ss_pred ---HHhCcCc-CCeEEEE
Confidence 2234555 6676655
No 423
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=47.92 E-value=12 Score=39.77 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=19.7
Q ss_pred HHHHHHhcCCcEEEEcCCCchHHHH
Q psy16633 47 RAIPLILQNKDVLVRARTGSGKTGA 71 (540)
Q Consensus 47 ~ai~~il~gkd~li~a~TGsGKT~a 71 (540)
.+-..+..|..+++.+|+|+|||..
T Consensus 52 ~l~~~i~~g~~vll~Gp~GtGKTtl 76 (604)
T 3k1j_A 52 VIKTAANQKRHVLLIGEPGTGKSML 76 (604)
T ss_dssp HHHHHHHTTCCEEEECCTTSSHHHH
T ss_pred hccccccCCCEEEEEeCCCCCHHHH
Confidence 3334455788999999999999973
No 424
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=47.85 E-value=9.1 Score=33.91 Aligned_cols=16 Identities=31% Similarity=0.420 Sum_probs=13.9
Q ss_pred CcEEEEcCCCchHHHH
Q psy16633 56 KDVLVRARTGSGKTGA 71 (540)
Q Consensus 56 kd~li~a~TGsGKT~a 71 (540)
.-+++.++.|||||..
T Consensus 21 ~~I~l~G~~GsGKST~ 36 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQ 36 (201)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4589999999999974
No 425
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=47.83 E-value=15 Score=29.80 Aligned_cols=36 Identities=14% Similarity=0.006 Sum_probs=30.4
Q ss_pred cCCcEEEEecChhh--HHHHHHHHHhCCCceEEeCCCC
Q psy16633 265 VQGKTIIFVNTVDK--CYKLKLYLEQFKISTCVLNSEL 300 (540)
Q Consensus 265 ~~~k~IIF~~s~~~--~~~l~~~L~~~~~~~~~l~~~l 300 (540)
...+++|||.+-.. +...+..|.+.|+.+..+.||+
T Consensus 70 ~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~ 107 (124)
T 3flh_A 70 PAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGAL 107 (124)
T ss_dssp TTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHH
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcH
Confidence 35579999998766 7889999999999988888885
No 426
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=47.70 E-value=7.8 Score=33.79 Aligned_cols=15 Identities=40% Similarity=0.434 Sum_probs=13.3
Q ss_pred cEEEEcCCCchHHHH
Q psy16633 57 DVLVRARTGSGKTGA 71 (540)
Q Consensus 57 d~li~a~TGsGKT~a 71 (540)
-+++.++.|||||..
T Consensus 8 ~I~l~G~~GsGKsT~ 22 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQ 22 (194)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 488999999999974
No 427
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=47.59 E-value=8.9 Score=34.63 Aligned_cols=17 Identities=24% Similarity=0.329 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCchHHHH
Q psy16633 55 NKDVLVRARTGSGKTGA 71 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a 71 (540)
+..+++.|+.|||||..
T Consensus 5 ~~~I~l~G~~GsGKsT~ 21 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQ 21 (222)
T ss_dssp SCCEEEEESTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45799999999999974
No 428
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=47.33 E-value=7.8 Score=34.42 Aligned_cols=18 Identities=22% Similarity=0.316 Sum_probs=15.0
Q ss_pred cCCcEEEEcCCCchHHHH
Q psy16633 54 QNKDVLVRARTGSGKTGA 71 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~a 71 (540)
.|.-+++.|+.|||||..
T Consensus 3 ~~~~I~i~G~~GsGKsT~ 20 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQ 20 (213)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCeEEEEEcCCCCCHHHH
Confidence 355689999999999974
No 429
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=47.14 E-value=14 Score=36.07 Aligned_cols=50 Identities=10% Similarity=-0.043 Sum_probs=27.3
Q ss_pred HHHHhc-----CCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCc
Q psy16633 49 IPLILQ-----NKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPS 100 (540)
Q Consensus 49 i~~il~-----gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt 100 (540)
+..++. |.-+++.|++|+|||... +-++....... .....+..++|+.-.
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla-~~la~~~~~~~-~~gg~~~~vlyi~~E 165 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLS-HTLCVTAQLPG-AGGYPGGKIIFIDTE 165 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHH-HHHHHHTTSCB-TTTBCCCEEEEEESS
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHH-HHHHHHHhccc-ccCCCCCeEEEEECC
Confidence 555554 245899999999999743 33332211100 001135677887644
No 430
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=47.04 E-value=11 Score=36.77 Aligned_cols=16 Identities=38% Similarity=0.495 Sum_probs=14.2
Q ss_pred CcEEEEcCCCchHHHH
Q psy16633 56 KDVLVRARTGSGKTGA 71 (540)
Q Consensus 56 kd~li~a~TGsGKT~a 71 (540)
..+++.+|+|+|||..
T Consensus 52 ~~~ll~Gp~G~GKTTL 67 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTL 67 (334)
T ss_dssp CCEEEESSTTSSHHHH
T ss_pred CeEEEECCCCCcHHHH
Confidence 5699999999999974
No 431
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=46.99 E-value=50 Score=36.34 Aligned_cols=54 Identities=4% Similarity=-0.005 Sum_probs=42.9
Q ss_pred cCCcEEEEecChhhHHHHHHHHHh----CCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCC
Q psy16633 265 VQGKTIIFVNTVDKCYKLKLYLEQ----FKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324 (540)
Q Consensus 265 ~~~k~IIF~~s~~~~~~l~~~L~~----~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~ 324 (540)
.+..++|.++|+.-|.+.+.++.. .|+.+.++.|+++...|.... ..+|+++|+
T Consensus 123 ~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTp 180 (844)
T 1tf5_A 123 TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTN 180 (844)
T ss_dssp TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEH
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECc
Confidence 355799999999988877776654 589999999999987665442 279999997
No 432
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=46.78 E-value=23 Score=27.76 Aligned_cols=37 Identities=8% Similarity=0.091 Sum_probs=31.4
Q ss_pred cCCcEEEEecChhhHHHHHHHHHhCCCc-eEEeCCCCC
Q psy16633 265 VQGKTIIFVNTVDKCYKLKLYLEQFKIS-TCVLNSELP 301 (540)
Q Consensus 265 ~~~k~IIF~~s~~~~~~l~~~L~~~~~~-~~~l~~~l~ 301 (540)
...+++|||.+-..+...+..|.+.|+. +..+.|++.
T Consensus 57 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 57 FDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE 94 (108)
T ss_dssp TTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHH
Confidence 4568999999988899999999999995 888898853
No 433
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=46.72 E-value=29 Score=34.95 Aligned_cols=55 Identities=11% Similarity=0.138 Sum_probs=43.4
Q ss_pred CCcEEEEecChhhHHHHHHHHHhC----CCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCC
Q psy16633 266 QGKTIIFVNTVDKCYKLKLYLEQF----KISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324 (540)
Q Consensus 266 ~~k~IIF~~s~~~~~~l~~~L~~~----~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~ 324 (540)
..++||.++++.-+..++..+.++ ++++..++|+.+...+...+ ....+|+|+|.
T Consensus 129 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~Ivv~Tp 187 (434)
T 2db3_A 129 RPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECI----TRGCHVVIATP 187 (434)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHH----TTCCSEEEECH
T ss_pred CccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHh----hcCCCEEEECh
Confidence 458999999999999998888764 57788899998876544332 34689999997
No 434
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=46.28 E-value=8.8 Score=34.01 Aligned_cols=16 Identities=25% Similarity=0.380 Sum_probs=13.6
Q ss_pred CcEEEEcCCCchHHHH
Q psy16633 56 KDVLVRARTGSGKTGA 71 (540)
Q Consensus 56 kd~li~a~TGsGKT~a 71 (540)
+-+++.|+.|||||..
T Consensus 16 ~~I~l~G~~GsGKsT~ 31 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQ 31 (203)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 3588999999999974
No 435
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=46.21 E-value=9.1 Score=34.05 Aligned_cols=18 Identities=22% Similarity=0.289 Sum_probs=15.3
Q ss_pred cCCcEEEEcCCCchHHHH
Q psy16633 54 QNKDVLVRARTGSGKTGA 71 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~a 71 (540)
.|.-+++.|+.|||||..
T Consensus 9 ~~~~I~l~G~~GsGKST~ 26 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQ 26 (212)
T ss_dssp CSCEEEEEESTTSSHHHH
T ss_pred cCCEEEEEcCCCCCHHHH
Confidence 456799999999999974
No 436
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=46.20 E-value=9.1 Score=39.02 Aligned_cols=17 Identities=41% Similarity=0.573 Sum_probs=14.9
Q ss_pred CCcEEEEcCCCchHHHH
Q psy16633 55 NKDVLVRARTGSGKTGA 71 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a 71 (540)
.+++++.+|+|+|||..
T Consensus 50 ~~~iLl~GppGtGKT~l 66 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEI 66 (444)
T ss_dssp CCCEEEECCTTSSHHHH
T ss_pred CceEEEEcCCCCCHHHH
Confidence 46899999999999974
No 437
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=46.20 E-value=14 Score=29.06 Aligned_cols=36 Identities=17% Similarity=0.096 Sum_probs=30.8
Q ss_pred cCCcEEEEecChhhHHHHHHHHHhCCCceEEeCCCC
Q psy16633 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSEL 300 (540)
Q Consensus 265 ~~~k~IIF~~s~~~~~~l~~~L~~~~~~~~~l~~~l 300 (540)
...+++++|.+-.++...+..|.+.|+.+..+.||+
T Consensus 55 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 345799999998888999999999999988888874
No 438
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=46.18 E-value=43 Score=33.46 Aligned_cols=31 Identities=23% Similarity=0.227 Sum_probs=23.7
Q ss_pred ChHHHHHHHHHHh---cCCcEEEEcCCCchHHHH
Q psy16633 41 PTLIQERAIPLIL---QNKDVLVRARTGSGKTGA 71 (540)
Q Consensus 41 pt~~Q~~ai~~il---~gkd~li~a~TGsGKT~a 71 (540)
|-..=.++|...+ +|+.+.|.+|+|+|||..
T Consensus 157 ~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtL 190 (422)
T 3ice_A 157 TEDLTARVLDLASPIGRGQRGLIVAPPKAGKTML 190 (422)
T ss_dssp TTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHH
T ss_pred cccccceeeeeeeeecCCcEEEEecCCCCChhHH
Confidence 4445556776665 488999999999999974
No 439
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=46.07 E-value=14 Score=32.26 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=15.6
Q ss_pred cEEEEcCCCchHHHHHHHHHHHH
Q psy16633 57 DVLVRARTGSGKTGAFAIPMIQK 79 (540)
Q Consensus 57 d~li~a~TGsGKT~a~~ipil~~ 79 (540)
-+++.++.|||||. ++-.++..
T Consensus 8 ~i~i~G~sGsGKTT-l~~~l~~~ 29 (174)
T 1np6_A 8 LLAFAAWSGTGKTT-LLKKLIPA 29 (174)
T ss_dssp EEEEECCTTSCHHH-HHHHHHHH
T ss_pred EEEEEeCCCCCHHH-HHHHHHHh
Confidence 47899999999996 33334443
No 440
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=46.03 E-value=8.2 Score=38.29 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=15.5
Q ss_pred cEEEEcCCCchHHHHHHHHHHHH
Q psy16633 57 DVLVRARTGSGKTGAFAIPMIQK 79 (540)
Q Consensus 57 d~li~a~TGsGKT~a~~ipil~~ 79 (540)
-.++.|+||+|||.. +=++..
T Consensus 27 l~vi~G~NGaGKT~i--leAI~~ 47 (371)
T 3auy_A 27 IVAIIGENGSGKSSI--FEAVFF 47 (371)
T ss_dssp EEEEEECTTSSHHHH--HHHHHH
T ss_pred eEEEECCCCCCHHHH--HHHHHH
Confidence 478999999999974 334443
No 441
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=45.92 E-value=9.2 Score=32.58 Aligned_cols=15 Identities=20% Similarity=0.211 Sum_probs=13.0
Q ss_pred cEEEEcCCCchHHHH
Q psy16633 57 DVLVRARTGSGKTGA 71 (540)
Q Consensus 57 d~li~a~TGsGKT~a 71 (540)
.+++.++.|||||..
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTV 16 (168)
T ss_dssp EEEEESCTTSCHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 478999999999974
No 442
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=45.73 E-value=8.8 Score=34.03 Aligned_cols=15 Identities=20% Similarity=0.383 Sum_probs=13.0
Q ss_pred cEEEEcCCCchHHHH
Q psy16633 57 DVLVRARTGSGKTGA 71 (540)
Q Consensus 57 d~li~a~TGsGKT~a 71 (540)
.+.+.|+.|||||..
T Consensus 3 ~i~i~G~~GsGKSTl 17 (204)
T 2if2_A 3 RIGLTGNIGCGKSTV 17 (204)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 478999999999974
No 443
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=45.62 E-value=8.5 Score=36.37 Aligned_cols=17 Identities=29% Similarity=0.358 Sum_probs=15.0
Q ss_pred cCCcEEEEcCCCchHHH
Q psy16633 54 QNKDVLVRARTGSGKTG 70 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~ 70 (540)
.|+-+.+.+|.|||||.
T Consensus 44 ~Ge~~~i~G~nGsGKST 60 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKST 60 (271)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 46778999999999997
No 444
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=45.51 E-value=9.7 Score=33.93 Aligned_cols=18 Identities=11% Similarity=0.246 Sum_probs=15.4
Q ss_pred cCCcEEEEcCCCchHHHH
Q psy16633 54 QNKDVLVRARTGSGKTGA 71 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~a 71 (540)
.+.-+++.|+.|||||..
T Consensus 8 ~~~~I~l~G~~GsGKsT~ 25 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQ 25 (215)
T ss_dssp CCCEEEEEESTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 466799999999999974
No 445
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=45.31 E-value=39 Score=28.50 Aligned_cols=58 Identities=14% Similarity=0.108 Sum_probs=43.4
Q ss_pred cCCcEEEEecC--------------hhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcC---CccEEEeC
Q psy16633 265 VQGKTIIFVNT--------------VDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQG---LYDVIIAS 323 (540)
Q Consensus 265 ~~~k~IIF~~s--------------~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g---~~~iLIaT 323 (540)
..|.+|||.|. ..+++.|...|+++|+.+.+++ +++..+-...+++|.+. ..+.+|+.
T Consensus 15 ~rG~alIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~~~-dlt~~em~~~l~~~~~~dh~~~dc~vv~ 89 (146)
T 2dko_A 15 EMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKN-DLTREEIVELMRDVSKEDHSKRSSFVCV 89 (146)
T ss_dssp EEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEEEEEE-SCCHHHHHHHHHHHHHSCCTTEEEEEEE
T ss_pred CceEEEEEeccccCCCCCcccCCCCHHHHHHHHHHHHHCCCEEEEee-CCCHHHHHHHHHHHHHhhcCCCCeEEEE
Confidence 35678888763 3478999999999999976554 78888888999999653 44555555
No 446
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=45.06 E-value=34 Score=29.98 Aligned_cols=45 Identities=27% Similarity=0.353 Sum_probs=24.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHH
Q psy16633 58 VLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQEL 114 (540)
Q Consensus 58 ~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l 114 (540)
++|.+++|||||. |..- +.. . +..++|+......-.++.+.+...
T Consensus 2 ilV~Gg~~SGKS~-~A~~----la~------~-~~~~~yiaT~~~~d~e~~~rI~~h 46 (180)
T 1c9k_A 2 ILVTGGARSGKSR-HAEA----LIG------D-APQVLYIATSQILDDEMAARIQHH 46 (180)
T ss_dssp EEEEECTTSSHHH-HHHH----HHC------S-CSSEEEEECCCC------CHHHHH
T ss_pred EEEECCCCCcHHH-HHHH----HHh------c-CCCeEEEecCCCCCHHHHHHHHHH
Confidence 6899999999996 3322 211 2 445778776544334444444444
No 447
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=44.96 E-value=12 Score=34.61 Aligned_cols=17 Identities=24% Similarity=0.327 Sum_probs=14.5
Q ss_pred CCcEEEEcCCCchHHHH
Q psy16633 55 NKDVLVRARTGSGKTGA 71 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a 71 (540)
+..+++.|+.|||||..
T Consensus 29 ~~~I~l~G~~GsGKsT~ 45 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQ 45 (243)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 44699999999999974
No 448
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=44.93 E-value=10 Score=33.85 Aligned_cols=13 Identities=23% Similarity=0.516 Sum_probs=11.9
Q ss_pred EEEEcCCCchHHH
Q psy16633 58 VLVRARTGSGKTG 70 (540)
Q Consensus 58 ~li~a~TGsGKT~ 70 (540)
+++.|+.|||||.
T Consensus 3 I~i~G~~GsGKsT 15 (214)
T 1gtv_A 3 IAIEGVDGAGKRT 15 (214)
T ss_dssp EEEEEEEEEEHHH
T ss_pred EEEEcCCCCCHHH
Confidence 6799999999997
No 449
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=44.79 E-value=15 Score=32.89 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=16.1
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHH
Q psy16633 57 DVLVRARTGSGKTGAFAIPMIQKII 81 (540)
Q Consensus 57 d~li~a~TGsGKT~a~~ipil~~l~ 81 (540)
-.+|.+|+|+|||.. +-++..++
T Consensus 25 ~~~I~G~NgsGKSti--l~ai~~~l 47 (203)
T 3qks_A 25 INLIIGQNGSGKSSL--LDAILVGL 47 (203)
T ss_dssp EEEEECCTTSSHHHH--HHHHHHHH
T ss_pred eEEEEcCCCCCHHHH--HHHHHHHh
Confidence 478999999999974 33444443
No 450
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=44.69 E-value=8.5 Score=35.51 Aligned_cols=17 Identities=29% Similarity=0.427 Sum_probs=15.0
Q ss_pred cCCcEEEEcCCCchHHH
Q psy16633 54 QNKDVLVRARTGSGKTG 70 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~ 70 (540)
.|+-+.+.+|.|||||.
T Consensus 30 ~Ge~~~i~G~nGsGKST 46 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSS 46 (237)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 46778999999999996
No 451
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=44.47 E-value=9.7 Score=33.52 Aligned_cols=15 Identities=20% Similarity=0.439 Sum_probs=12.8
Q ss_pred cEEEEcCCCchHHHH
Q psy16633 57 DVLVRARTGSGKTGA 71 (540)
Q Consensus 57 d~li~a~TGsGKT~a 71 (540)
.+++.|+.|||||..
T Consensus 2 ~I~i~G~~GsGKsT~ 16 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTI 16 (205)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCccCHHHH
Confidence 378999999999973
No 452
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=44.47 E-value=10 Score=35.14 Aligned_cols=18 Identities=22% Similarity=0.268 Sum_probs=15.2
Q ss_pred cCCcEEEEcCCCchHHHH
Q psy16633 54 QNKDVLVRARTGSGKTGA 71 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~a 71 (540)
.|.-+.+.+|+|||||..
T Consensus 26 ~g~~I~I~G~~GsGKSTl 43 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTL 43 (252)
T ss_dssp TSCEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 356789999999999974
No 453
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=44.47 E-value=36 Score=32.29 Aligned_cols=54 Identities=13% Similarity=0.209 Sum_probs=42.6
Q ss_pred CCcEEEEecChhhHHHHHHHHHhC----CCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCC
Q psy16633 266 QGKTIIFVNTVDKCYKLKLYLEQF----KISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324 (540)
Q Consensus 266 ~~k~IIF~~s~~~~~~l~~~L~~~----~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~ 324 (540)
..++||.+|++.-+..++..+.++ +..+..++|+.+....... +. ..+|+|+|.
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~i~v~T~ 113 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINR---VR--NADIVVATP 113 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHH---HT--TCSEEEECH
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhh---cC--CCCEEEECH
Confidence 568999999999998888888753 5788999999887654433 22 388999997
No 454
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=44.33 E-value=7.8 Score=33.58 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=11.1
Q ss_pred cCCcEEEEcCCCchHHHHH
Q psy16633 54 QNKDVLVRARTGSGKTGAF 72 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~a~ 72 (540)
++.-+++.++.|||||...
T Consensus 4 ~~~~I~l~G~~GsGKST~a 22 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTA 22 (183)
T ss_dssp -CCEEEEECCC----CHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3566899999999999743
No 455
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=43.93 E-value=12 Score=39.00 Aligned_cols=41 Identities=15% Similarity=0.049 Sum_probs=24.5
Q ss_pred CCccEEEEcCccccccCCc--HHHHHHHHHhCCcccceeeEeeec
Q psy16633 167 SSLEIVIIDEADLVFSFGY--EDDMKAVLKFLPKLYQAILASATL 209 (540)
Q Consensus 167 ~~l~~lViDEah~l~~~~~--~~~l~~i~~~l~~~~q~il~SATl 209 (540)
..-.+|+|||+|.+..... ...+..++... ...+|+++++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcCC
Confidence 4456899999998865322 23344444332 34577777654
No 456
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=43.89 E-value=9.6 Score=35.84 Aligned_cols=17 Identities=35% Similarity=0.524 Sum_probs=14.8
Q ss_pred cCCcEEEEcCCCchHHH
Q psy16633 54 QNKDVLVRARTGSGKTG 70 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~ 70 (540)
.|+-+.+.+|.|||||.
T Consensus 49 ~Gei~~liG~NGsGKST 65 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKST 65 (263)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEEcCCCCcHHH
Confidence 46678899999999997
No 457
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=43.75 E-value=10 Score=33.76 Aligned_cols=15 Identities=40% Similarity=0.333 Sum_probs=12.8
Q ss_pred cEEEEcCCCchHHHH
Q psy16633 57 DVLVRARTGSGKTGA 71 (540)
Q Consensus 57 d~li~a~TGsGKT~a 71 (540)
-+.+.|+.|||||..
T Consensus 4 ~i~l~G~~GsGKST~ 18 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTI 18 (206)
T ss_dssp EEEEECSTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367899999999974
No 458
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=43.62 E-value=9.6 Score=47.80 Aligned_cols=20 Identities=25% Similarity=0.428 Sum_probs=17.1
Q ss_pred HhcCCcEEEEcCCCchHHHH
Q psy16633 52 ILQNKDVLVRARTGSGKTGA 71 (540)
Q Consensus 52 il~gkd~li~a~TGsGKT~a 71 (540)
+..++.+++.||||+|||..
T Consensus 1264 l~~~~~vLL~GPpGtGKT~l 1283 (2695)
T 4akg_A 1264 LNSKRGIILCGPPGSGKTMI 1283 (2695)
T ss_dssp HHHTCEEEEECSTTSSHHHH
T ss_pred HHCCCeEEEECCCCCCHHHH
Confidence 34578999999999999974
No 459
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=43.61 E-value=17 Score=29.62 Aligned_cols=37 Identities=8% Similarity=-0.030 Sum_probs=31.4
Q ss_pred cCCcEEEEecChhhHHHHHHHHHhCCCc-eEEeCCCCC
Q psy16633 265 VQGKTIIFVNTVDKCYKLKLYLEQFKIS-TCVLNSELP 301 (540)
Q Consensus 265 ~~~k~IIF~~s~~~~~~l~~~L~~~~~~-~~~l~~~l~ 301 (540)
...+++|||.+-..+...+..|.+.|+. +..+.|++.
T Consensus 81 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 81 QSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp TTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 4568999999988899999999999985 888999863
No 460
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=43.57 E-value=10 Score=35.42 Aligned_cols=16 Identities=19% Similarity=0.293 Sum_probs=13.8
Q ss_pred CcEEEEcCCCchHHHH
Q psy16633 56 KDVLVRARTGSGKTGA 71 (540)
Q Consensus 56 kd~li~a~TGsGKT~a 71 (540)
.-+++.|++|||||..
T Consensus 5 ~lIvl~G~pGSGKSTl 20 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTF 20 (260)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred EEEEEEcCCCCCHHHH
Confidence 4589999999999974
No 461
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=43.50 E-value=11 Score=34.02 Aligned_cols=17 Identities=24% Similarity=0.468 Sum_probs=14.4
Q ss_pred CCcEEEEcCCCchHHHH
Q psy16633 55 NKDVLVRARTGSGKTGA 71 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a 71 (540)
+..+++.++.|||||..
T Consensus 5 ~~~I~l~G~~GsGKsT~ 21 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQ 21 (217)
T ss_dssp CCEEEEEECTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 45689999999999974
No 462
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=43.50 E-value=23 Score=31.98 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=15.5
Q ss_pred hcCCcEEEEcCCCchHHHH
Q psy16633 53 LQNKDVLVRARTGSGKTGA 71 (540)
Q Consensus 53 l~gkd~li~a~TGsGKT~a 71 (540)
+.|.-+++.++.|||||..
T Consensus 4 m~g~~i~~eG~~gsGKsT~ 22 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTN 22 (213)
T ss_dssp -CCEEEEEECSTTSSHHHH
T ss_pred CCceEEEEEcCCCCCHHHH
Confidence 4567789999999999974
No 463
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=43.41 E-value=11 Score=32.39 Aligned_cols=25 Identities=20% Similarity=0.150 Sum_probs=17.7
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHH
Q psy16633 54 QNKDVLVRARTGSGKTGAFAIPMIQKI 80 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~a~~ipil~~l 80 (540)
.|.-+.+.+|.|+|||. ++-++..+
T Consensus 32 ~Ge~v~L~G~nGaGKTT--Llr~l~g~ 56 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTT--LTRGMLQG 56 (158)
T ss_dssp SCEEEEEECSTTSSHHH--HHHHHHHH
T ss_pred CCCEEEEECCCCCCHHH--HHHHHHHh
Confidence 45668899999999996 33344443
No 464
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=49.29 E-value=5 Score=34.73 Aligned_cols=55 Identities=18% Similarity=0.285 Sum_probs=36.6
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchh----hhhCCCCEEEEC
Q psy16633 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEP----LLVERPDIVVAT 150 (540)
Q Consensus 90 ~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~----~l~~~~~Ivv~T 150 (540)
.+.++||.++++.-+..+++.+...+ +.+..+.|+........ ...+...|+|+|
T Consensus 29 ~~~~~iVF~~~~~~~~~l~~~L~~~~------~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT 87 (170)
T 2yjt_D 29 EATRSIVFVRKRERVHELANWLREAG------INNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT 87 (170)
Confidence 45789999999999998888887653 34455555544333222 223467799998
No 465
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=43.24 E-value=47 Score=31.77 Aligned_cols=47 Identities=17% Similarity=0.198 Sum_probs=40.0
Q ss_pred CcEEEEecC-----------hhhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhc
Q psy16633 267 GKTIIFVNT-----------VDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQ 314 (540)
Q Consensus 267 ~k~IIF~~s-----------~~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~ 314 (540)
+-+|||.|. ..++..|...|+.+|+.|.+ +.+++..+-...+++|..
T Consensus 61 r~aLII~N~~f~~l~~R~G~~~Da~~L~~~f~~LGF~V~~-~~dlt~~em~~~l~~f~~ 118 (302)
T 3e4c_A 61 RLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVDV-KKNLTASDMTTELEAFAH 118 (302)
T ss_dssp CEEEEEECCSCSSSCCCTTHHHHHHHHHHHHHHTTCEEEE-EESCCHHHHHHHHHHHHT
T ss_pred cEEEEEECcCCCCCCCCCCcHHHHHHHHHHHHHCCCEEEE-eeCCCHHHHHHHHHHHHh
Confidence 458999988 56799999999999999764 457999999999999964
No 466
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=43.24 E-value=17 Score=34.94 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=18.2
Q ss_pred HHHHHhcC-----CcEEEEcCCCchHHHHH
Q psy16633 48 AIPLILQN-----KDVLVRARTGSGKTGAF 72 (540)
Q Consensus 48 ai~~il~g-----kd~li~a~TGsGKT~a~ 72 (540)
.+..++.| .-+++.+++|+|||...
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la 115 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIM 115 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHH
Confidence 35555543 45899999999999743
No 467
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=43.24 E-value=10 Score=33.02 Aligned_cols=14 Identities=36% Similarity=0.484 Sum_probs=12.4
Q ss_pred EEEEcCCCchHHHH
Q psy16633 58 VLVRARTGSGKTGA 71 (540)
Q Consensus 58 ~li~a~TGsGKT~a 71 (540)
+++.|+.|||||..
T Consensus 3 I~l~G~~GsGKsT~ 16 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQ 16 (195)
T ss_dssp EEEECSTTSCHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 68999999999974
No 468
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=43.21 E-value=14 Score=35.56 Aligned_cols=26 Identities=15% Similarity=0.187 Sum_probs=18.5
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHh
Q psy16633 55 NKDVLVRARTGSGKTGAFAIPMIQKIIN 82 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a~~ipil~~l~~ 82 (540)
|.-+.|.||+|||||. ++-++..++.
T Consensus 90 g~ivgI~G~sGsGKST--L~~~L~gll~ 115 (312)
T 3aez_A 90 PFIIGVAGSVAVGKST--TARVLQALLA 115 (312)
T ss_dssp CEEEEEECCTTSCHHH--HHHHHHHHHH
T ss_pred CEEEEEECCCCchHHH--HHHHHHhhcc
Confidence 4457899999999997 3445555554
No 469
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=43.06 E-value=11 Score=33.11 Aligned_cols=14 Identities=29% Similarity=0.458 Sum_probs=12.4
Q ss_pred EEEEcCCCchHHHH
Q psy16633 58 VLVRARTGSGKTGA 71 (540)
Q Consensus 58 ~li~a~TGsGKT~a 71 (540)
+++.|+.|||||..
T Consensus 3 I~l~G~~GsGKsT~ 16 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQ 16 (197)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 67899999999974
No 470
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=42.96 E-value=26 Score=29.28 Aligned_cols=37 Identities=5% Similarity=0.008 Sum_probs=30.6
Q ss_pred cCCcEEEEecChhhHHHHHHHHHhCCC-ceEEeCCCCC
Q psy16633 265 VQGKTIIFVNTVDKCYKLKLYLEQFKI-STCVLNSELP 301 (540)
Q Consensus 265 ~~~k~IIF~~s~~~~~~l~~~L~~~~~-~~~~l~~~l~ 301 (540)
...+++|||.+-..+...+..|...|+ .+..+.|++.
T Consensus 79 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 79 HERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp --CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 346899999998888899999999999 5889999874
No 471
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=42.81 E-value=16 Score=34.80 Aligned_cols=24 Identities=21% Similarity=0.164 Sum_probs=16.3
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHHh
Q psy16633 57 DVLVRARTGSGKTGAFAIPMIQKIIN 82 (540)
Q Consensus 57 d~li~a~TGsGKT~a~~ipil~~l~~ 82 (540)
-+.|.|++|||||.. .-.+..++.
T Consensus 33 ii~I~G~sGsGKSTl--a~~L~~~l~ 56 (290)
T 1odf_A 33 FIFFSGPQGSGKSFT--SIQIYNHLM 56 (290)
T ss_dssp EEEEECCTTSSHHHH--HHHHHHHHH
T ss_pred EEEEECCCCCCHHHH--HHHHHHHhh
Confidence 377999999999973 333444443
No 472
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=42.48 E-value=4.7 Score=43.69 Aligned_cols=55 Identities=25% Similarity=0.312 Sum_probs=39.4
Q ss_pred CcEEEEecChhhHHHH-HHHHHhCC---CceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCCC
Q psy16633 267 GKTIIFVNTVDKCYKL-KLYLEQFK---ISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE 325 (540)
Q Consensus 267 ~k~IIF~~s~~~~~~l-~~~L~~~~---~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~~ 325 (540)
+++||.+|++.-+... ...|++++ +.+..++|+.+...+...+. +..+|+|+|..
T Consensus 57 ~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~ 115 (699)
T 4gl2_A 57 GKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQ 115 (699)
T ss_dssp CCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHHHH----HSCSEEEEEHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHhhh----cCCCEEEECHH
Confidence 7899999999988888 77777654 89999999976554333222 57899999984
No 473
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=42.34 E-value=53 Score=32.13 Aligned_cols=56 Identities=11% Similarity=0.106 Sum_probs=42.6
Q ss_pred cCCcEEEEecChhhHHHHHHHHHhC----CCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCC
Q psy16633 265 VQGKTIIFVNTVDKCYKLKLYLEQF----KISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324 (540)
Q Consensus 265 ~~~k~IIF~~s~~~~~~l~~~L~~~----~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~ 324 (540)
.+.++||.++++.-+..++..+.++ ++.+..++|+......... ..+..+|+|+|.
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~Ivv~T~ 147 (400)
T 1s2m_A 88 NKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILR----LNETVHILVGTP 147 (400)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHH----TTSCCSEEEECH
T ss_pred CCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHH----hcCCCCEEEEch
Confidence 3458999999999988888777654 6788889998876543222 246789999997
No 474
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=42.27 E-value=61 Score=31.77 Aligned_cols=57 Identities=9% Similarity=0.115 Sum_probs=44.1
Q ss_pred cCCcEEEEecChhhHHHHHHHHHhC----CCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCC
Q psy16633 265 VQGKTIIFVNTVDKCYKLKLYLEQF----KISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324 (540)
Q Consensus 265 ~~~k~IIF~~s~~~~~~l~~~L~~~----~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~ 324 (540)
...++||.++++.-+..++..+.++ +..+..++++...... ......+..+|+|+|.
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~iiv~T~ 167 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQMEAPHIIVGTP 167 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTTCCSEEEECH
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcCCCCEEEECH
Confidence 4568999999999998888888764 6777888888765443 4455668899999997
No 475
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=42.21 E-value=11 Score=33.94 Aligned_cols=15 Identities=13% Similarity=0.233 Sum_probs=13.0
Q ss_pred cEEEEcCCCchHHHH
Q psy16633 57 DVLVRARTGSGKTGA 71 (540)
Q Consensus 57 d~li~a~TGsGKT~a 71 (540)
.+++.|+.|||||..
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQ 16 (214)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 378999999999974
No 476
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=42.10 E-value=12 Score=34.46 Aligned_cols=17 Identities=24% Similarity=0.268 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCchHHHH
Q psy16633 55 NKDVLVRARTGSGKTGA 71 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a 71 (540)
+.-+++.||.|||||..
T Consensus 27 ~~~i~l~G~~GsGKSTl 43 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTV 43 (246)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 46799999999999973
No 477
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=42.03 E-value=31 Score=38.83 Aligned_cols=55 Identities=15% Similarity=0.137 Sum_probs=39.2
Q ss_pred CCcEEEEecChhhHHHHHHHHHhC----CCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCC
Q psy16633 266 QGKTIIFVNTVDKCYKLKLYLEQF----KISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324 (540)
Q Consensus 266 ~~k~IIF~~s~~~~~~l~~~L~~~----~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~ 324 (540)
++++||.++++.-+......++++ ++.+..++|+.+...+...+. +..+|+|+|.
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~----~~~~IvI~Tp 354 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTP 354 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHH----HHCSEEEECH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhc----cCCCEEEecH
Confidence 568999999999888887777664 899999999986655432221 2478999997
No 478
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=41.88 E-value=13 Score=33.60 Aligned_cols=17 Identities=29% Similarity=0.335 Sum_probs=15.2
Q ss_pred cCCcEEEEcCCCchHHH
Q psy16633 54 QNKDVLVRARTGSGKTG 70 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~ 70 (540)
.|+-+.+.+|.|||||.
T Consensus 34 ~Ge~~~iiG~NGsGKST 50 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTT 50 (214)
T ss_dssp TTCCEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 47778999999999997
No 479
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=41.88 E-value=53 Score=24.15 Aligned_cols=35 Identities=11% Similarity=0.079 Sum_probs=28.3
Q ss_pred cCCcEEEEecChhhHHHHHHHHHhCCCc-eEEeCCCC
Q psy16633 265 VQGKTIIFVNTVDKCYKLKLYLEQFKIS-TCVLNSEL 300 (540)
Q Consensus 265 ~~~k~IIF~~s~~~~~~l~~~L~~~~~~-~~~l~~~l 300 (540)
...++++||.+-..+...+..|.+.|+. +..+ |++
T Consensus 40 ~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~ 75 (85)
T 2jtq_A 40 KNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGL 75 (85)
T ss_dssp TTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EET
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCH
Confidence 4568999999988899999999999985 5555 664
No 480
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=41.77 E-value=11 Score=33.21 Aligned_cols=15 Identities=27% Similarity=0.381 Sum_probs=13.1
Q ss_pred cEEEEcCCCchHHHH
Q psy16633 57 DVLVRARTGSGKTGA 71 (540)
Q Consensus 57 d~li~a~TGsGKT~a 71 (540)
-+.+.+++|||||..
T Consensus 10 ~I~i~G~~GsGKST~ 24 (203)
T 1uf9_A 10 IIGITGNIGSGKSTV 24 (203)
T ss_dssp EEEEEECTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999974
No 481
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=41.32 E-value=14 Score=39.23 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=18.6
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHH
Q psy16633 54 QNKDVLVRARTGSGKTGAFAIPMIQKI 80 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~a~~ipil~~l 80 (540)
.|+-+.+.+|+|||||. ++-++..+
T Consensus 368 ~G~~~~ivG~sGsGKST--ll~~l~g~ 392 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKST--IANLFTRF 392 (582)
T ss_pred CCCEEEEECCCCCCHHH--HHHHHhcC
Confidence 46778999999999997 44444444
No 482
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=41.21 E-value=72 Score=30.66 Aligned_cols=49 Identities=4% Similarity=0.015 Sum_probs=40.5
Q ss_pred cCCcEEEEecCh------------hhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhc
Q psy16633 265 VQGKTIIFVNTV------------DKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQ 314 (540)
Q Consensus 265 ~~~k~IIF~~s~------------~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~ 314 (540)
..|-+|||.|.. .++..|...|+++|+.|. .+.+++..+-..++++|.+
T Consensus 60 ~rg~aLIInN~~F~~~~~~R~Gt~~D~~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~f~~ 120 (316)
T 2fp3_A 60 NRGVLLMVNIMDYPDQNRRRIGAEKDSKSLIHLFQELNFTIF-PYGNVNQDQFFKLLTMVTS 120 (316)
T ss_dssp CSEEEEEEECCCCSSTTSCCTTHHHHHHHHHHHHHHTTEEEE-EECSCCHHHHHHHHHHHHT
T ss_pred CCcEEEEEeCcccCCCCCCCCCcHHHHHHHHHHHHHCCCEEE-EccCCCHHHHHHHHHHHHH
Confidence 456789988762 679999999999999976 5568999999999999964
No 483
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=41.20 E-value=13 Score=34.02 Aligned_cols=17 Identities=35% Similarity=0.511 Sum_probs=15.1
Q ss_pred cCCcEEEEcCCCchHHH
Q psy16633 54 QNKDVLVRARTGSGKTG 70 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~ 70 (540)
.|+-+.+.+|.|||||.
T Consensus 33 ~Ge~~~i~G~nGsGKST 49 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTS 49 (229)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 46778999999999997
No 484
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=41.05 E-value=8.4 Score=35.79 Aligned_cols=16 Identities=31% Similarity=0.565 Sum_probs=13.7
Q ss_pred CcEEEEcCCCchHHHH
Q psy16633 56 KDVLVRARTGSGKTGA 71 (540)
Q Consensus 56 kd~li~a~TGsGKT~a 71 (540)
..+++.|++|||||..
T Consensus 33 ~~i~l~G~~GsGKSTl 48 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTI 48 (253)
T ss_dssp EEEEEESCGGGTTHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3589999999999973
No 485
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=40.94 E-value=14 Score=33.01 Aligned_cols=40 Identities=18% Similarity=0.164 Sum_probs=22.1
Q ss_pred ccEEEEcCccccccCC---cH--HHHHHHHHhCCcccceeeEeee
Q psy16633 169 LEIVIIDEADLVFSFG---YE--DDMKAVLKFLPKLYQAILASAT 208 (540)
Q Consensus 169 l~~lViDEah~l~~~~---~~--~~l~~i~~~l~~~~q~il~SAT 208 (540)
-.+|||||||.++... .+ ..+..+...-....++++++-.
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~ 132 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQG 132 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESC
T ss_pred ceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCC
Confidence 5689999999885321 11 1122222222334577777766
No 486
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=40.79 E-value=62 Score=35.84 Aligned_cols=54 Identities=9% Similarity=0.063 Sum_probs=42.5
Q ss_pred cCCcEEEEecChhhHHHHHHHHHh----CCCceEEeCCCCCHHHHHHHHHHHhcCCccEEEeCC
Q psy16633 265 VQGKTIIFVNTVDKCYKLKLYLEQ----FKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324 (540)
Q Consensus 265 ~~~k~IIF~~s~~~~~~l~~~L~~----~~~~~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~ 324 (540)
.+..++|.++|..-|.+.+.++.. +|+.+.++.|+++...|.... ..+|+++|+
T Consensus 151 ~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTp 208 (922)
T 1nkt_A 151 AGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTN 208 (922)
T ss_dssp TTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEH
T ss_pred hCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECc
Confidence 355799999999888777666544 599999999999987765543 279999997
No 487
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=40.79 E-value=24 Score=42.98 Aligned_cols=46 Identities=11% Similarity=0.060 Sum_probs=30.7
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHH
Q psy16633 54 QNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLH 108 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~ 108 (540)
.|..+++.+++|+|||..+...+.+.. ..+.+++++.- .++..+++
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~--------k~Ge~~~Fit~-ee~~~~L~ 1125 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQ--------REGKTCAFIDA-EHALDPIY 1125 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH--------TTTCCEEEECT-TSCCCHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH--------HcCCeEEEEEc-cccHHHHH
Confidence 568899999999999985444433333 35778888753 34444444
No 488
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=40.68 E-value=12 Score=33.92 Aligned_cols=15 Identities=33% Similarity=0.567 Sum_probs=12.9
Q ss_pred cEEEEcCCCchHHHH
Q psy16633 57 DVLVRARTGSGKTGA 71 (540)
Q Consensus 57 d~li~a~TGsGKT~a 71 (540)
.+++.|+.|||||..
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQ 16 (223)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 378999999999974
No 489
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=40.66 E-value=1.8e+02 Score=25.22 Aligned_cols=129 Identities=9% Similarity=0.001 Sum_probs=48.1
Q ss_pred HhcCCcEEEEcCCCchHHHHHHHHHHHHHHhhcc-----cccCCCeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEE
Q psy16633 52 ILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQ-----TAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVD 126 (540)
Q Consensus 52 il~gkd~li~a~TGsGKT~a~~ipil~~l~~~~~-----~~~~~~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~ 126 (540)
.+.|..+-+.+..|-|=|+.+.+|+...-..... .....+.++||+-........+...+...+ .. .+
T Consensus 17 ~~hgG~i~v~S~~g~Gs~f~~~lP~~~~~~~~~~~~~~~~~~~~~~~ILiVdDd~~~~~~l~~~L~~~g----~~-~v-- 89 (206)
T 3mm4_A 17 GSHMASTDSESETRVKSVRTGRKPIGNPEDEQETSKPSDDEFLRGKRVLVVDDNFISRKVATGKLKKMG----VS-EV-- 89 (206)
T ss_dssp --------------------------------------CTTTTTTCEEEEECSCHHHHHHHHHHHHHTT----CS-EE--
T ss_pred cccCCceeeeccCCCcceeeeccCCCCCcccccccCCCcccccCCCEEEEEeCCHHHHHHHHHHHHHcC----CC-ee--
Confidence 4567778899999999999999997433211110 111345688888887766555555554431 00 11
Q ss_pred eecCcccccchhhhhCCCCEEEEChHHHHHHHhcC--------cCCccCCccEEEEcCccccccCCcHHHHHHHHHh---
Q psy16633 127 ISEQVDVSVQEPLLVERPDIVVATPARALAHLKAK--------TLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKF--- 195 (540)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~--------~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~--- 195 (540)
..+.+....+..+... ...- ..+++||+|= + |.+.+-.+.+..+...
T Consensus 90 -------------------~~a~~~~eal~~l~~~~~~~~~~~~~~~-~~~dlillD~-~-lp~~~G~el~~~lr~~~~~ 147 (206)
T 3mm4_A 90 -------------------EQCDSGKEALRLVTEGLTQREEQGSVDK-LPFDYIFMDC-Q-MPEMDGYEATREIRKVEKS 147 (206)
T ss_dssp -------------------EEESSHHHHHHHHHHHHHHHHHHTCSSC-CSCSEEEEES-C-CSSSCHHHHHHHHHHHHHT
T ss_pred -------------------eeeCCHHHHHHHHHhhcccccccccccC-CCCCEEEEcC-C-CCCCCHHHHHHHHHhhhhh
Confidence 1233445555555432 1111 3578899983 2 2333322334444433
Q ss_pred CCcccceeeEeeec
Q psy16633 196 LPKLYQAILASATL 209 (540)
Q Consensus 196 l~~~~q~il~SATl 209 (540)
......+|++|+..
T Consensus 148 ~~~~~piI~ls~~~ 161 (206)
T 3mm4_A 148 YGVRTPIIAVSGHD 161 (206)
T ss_dssp TTCCCCEEEEESSC
T ss_pred cCCCCcEEEEECCC
Confidence 23457899999876
No 490
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=40.66 E-value=30 Score=32.37 Aligned_cols=52 Identities=6% Similarity=0.024 Sum_probs=29.7
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHhhcccccCCCeEEEEEcCcHHHHHHHHHHHHHHH
Q psy16633 55 NKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELT 115 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a~~ipil~~l~~~~~~~~~~~~~vlil~Pt~~La~q~~~~l~~l~ 115 (540)
|..+++.+.+|+||| ++.+-.+..-+ ..+-++++++=. +-..++.+.++.++
T Consensus 21 gs~~li~g~p~~~~~-~l~~qfl~~g~-------~~Ge~~~~~~~~-e~~~~l~~~~~~~G 72 (260)
T 3bs4_A 21 SLILIHEEDASSRGK-DILFYILSRKL-------KSDNLVGMFSIS-YPLQLIIRILSRFG 72 (260)
T ss_dssp CEEEEEECSGGGCHH-HHHHHHHHHHH-------HTTCEEEEEECS-SCHHHHHHHHHHTT
T ss_pred CcEEEEEeCCCccHH-HHHHHHHHHHH-------HCCCcEEEEEEe-CCHHHHHHHHHHcC
Confidence 456888877777777 44444333332 246677776543 33355566666553
No 491
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=40.44 E-value=50 Score=30.06 Aligned_cols=46 Identities=17% Similarity=0.152 Sum_probs=39.3
Q ss_pred CCcEEEEecChhhHHHHHHHHHhCCCc-eEEeCCCCCHHHHHHHHHHHhcCCccEEEeCC
Q psy16633 266 QGKTIIFVNTVDKCYKLKLYLEQFKIS-TCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324 (540)
Q Consensus 266 ~~k~IIF~~s~~~~~~l~~~L~~~~~~-~~~l~~~l~~~~r~~i~~~F~~g~~~iLIaT~ 324 (540)
.++++|+|++..-+..+...+.++++. +..++|+.. ...+|+|+|.
T Consensus 133 ~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~-------------~~~~i~v~T~ 179 (237)
T 2fz4_A 133 STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK-------------ELKPLTVSTY 179 (237)
T ss_dssp CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCB-------------CCCSEEEEEH
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCC-------------CcCCEEEEeH
Confidence 678999999999999999998888888 889998753 3578999986
No 492
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=40.42 E-value=13 Score=34.77 Aligned_cols=17 Identities=29% Similarity=0.431 Sum_probs=15.1
Q ss_pred cCCcEEEEcCCCchHHH
Q psy16633 54 QNKDVLVRARTGSGKTG 70 (540)
Q Consensus 54 ~gkd~li~a~TGsGKT~ 70 (540)
.|+-+.+.+|.|||||.
T Consensus 45 ~Ge~~~i~G~nGsGKST 61 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKST 61 (260)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 46778999999999997
No 493
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=40.38 E-value=15 Score=40.22 Aligned_cols=17 Identities=24% Similarity=0.429 Sum_probs=14.9
Q ss_pred CCcEEEEcCCCchHHHH
Q psy16633 55 NKDVLVRARTGSGKTGA 71 (540)
Q Consensus 55 gkd~li~a~TGsGKT~a 71 (540)
..++++.||+|+|||..
T Consensus 201 ~~~vLL~G~pGtGKT~l 217 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAI 217 (758)
T ss_dssp SCEEEEESCTTTTTHHH
T ss_pred CCCeEEECCCCCCHHHH
Confidence 35799999999999974
No 494
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=40.06 E-value=35 Score=36.29 Aligned_cols=55 Identities=16% Similarity=0.176 Sum_probs=41.2
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHHhhcCCCceEEEeecCcccccchhhhhCCCCEEEECh
Q psy16633 91 ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATP 151 (540)
Q Consensus 91 ~~~vlil~Pt~~La~q~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp 151 (540)
+.++||.++|+.-+..+++.+... .+.+..+.|+...........+..+|+|||.
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~------g~~v~~lhg~~R~~~l~~F~~g~~~VLVaTd 409 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKS------GKRVIQLSRKTFDTEYPKTKLTDWDFVVTTD 409 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHT------TCCEEEECTTTHHHHTTHHHHSCCSEEEECG
T ss_pred CCCEEEEECChhHHHHHHHHHHHc------CCcEEEEChHHHHHHHHhhcCCCcEEEEECc
Confidence 568999999999999998888865 3556777775444444445557889999994
No 495
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=39.51 E-value=13 Score=34.25 Aligned_cols=15 Identities=27% Similarity=0.377 Sum_probs=12.9
Q ss_pred CcEEEEcCCCchHHH
Q psy16633 56 KDVLVRARTGSGKTG 70 (540)
Q Consensus 56 kd~li~a~TGsGKT~ 70 (540)
+-+.+.+|.|||||.
T Consensus 25 e~~~liG~nGsGKST 39 (240)
T 2onk_A 25 DYCVLLGPTGAGKSV 39 (240)
T ss_dssp SEEEEECCTTSSHHH
T ss_pred EEEEEECCCCCCHHH
Confidence 446799999999997
No 496
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=39.40 E-value=68 Score=30.17 Aligned_cols=49 Identities=12% Similarity=0.165 Sum_probs=40.4
Q ss_pred cCCcEEEEecCh--------------hhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhc
Q psy16633 265 VQGKTIIFVNTV--------------DKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQ 314 (540)
Q Consensus 265 ~~~k~IIF~~s~--------------~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~ 314 (540)
..|-+|||.|.. .+++.|...|+++|+.|.++ .+++..+-...+++|..
T Consensus 20 ~rg~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~~~-~dlt~~em~~~l~~~~~ 82 (278)
T 3od5_A 20 RRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCF-NDLKAEELLLKIHEVST 82 (278)
T ss_dssp BCCEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEEEE-ESCCHHHHHHHHHHHHH
T ss_pred CcCEEEEEeccccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEe-cCCCHHHHHHHHHHHHh
Confidence 456789998852 57999999999999997754 58999998999999965
No 497
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=39.28 E-value=13 Score=33.35 Aligned_cols=16 Identities=31% Similarity=0.333 Sum_probs=13.6
Q ss_pred CcEEEEcCCCchHHHH
Q psy16633 56 KDVLVRARTGSGKTGA 71 (540)
Q Consensus 56 kd~li~a~TGsGKT~a 71 (540)
.-+.+.++.|||||..
T Consensus 5 ~~I~i~G~~GSGKST~ 20 (218)
T 1vht_A 5 YIVALTGGIGSGKSTV 20 (218)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3578999999999974
No 498
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=39.26 E-value=13 Score=33.41 Aligned_cols=14 Identities=21% Similarity=0.389 Sum_probs=12.3
Q ss_pred EEEEcCCCchHHHH
Q psy16633 58 VLVRARTGSGKTGA 71 (540)
Q Consensus 58 ~li~a~TGsGKT~a 71 (540)
+++.+|+||||+..
T Consensus 3 Iil~GpPGsGKgTq 16 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQ 16 (206)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 68899999999974
No 499
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=39.20 E-value=26 Score=34.34 Aligned_cols=16 Identities=38% Similarity=0.227 Sum_probs=13.7
Q ss_pred CcEEEEcCCCchHHHH
Q psy16633 56 KDVLVRARTGSGKTGA 71 (540)
Q Consensus 56 kd~li~a~TGsGKT~a 71 (540)
.-+.+.+|+|||||..
T Consensus 132 ~i~~I~G~~GsGKTTL 147 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQL 147 (349)
T ss_dssp EEEEEEESTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4588999999999974
No 500
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Probab=39.18 E-value=91 Score=29.23 Aligned_cols=58 Identities=21% Similarity=0.280 Sum_probs=44.3
Q ss_pred cCCcEEEEecCh--------------hhHHHHHHHHHhCCCceEEeCCCCCHHHHHHHHHHHhcC---CccEEEeC
Q psy16633 265 VQGKTIIFVNTV--------------DKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQG---LYDVIIAS 323 (540)
Q Consensus 265 ~~~k~IIF~~s~--------------~~~~~l~~~L~~~~~~~~~l~~~l~~~~r~~i~~~F~~g---~~~iLIaT 323 (540)
++|-+|||.|.. .+++.|...|+++|+.|.+ +.+++..+-...+++|.+. ..+.+|+.
T Consensus 20 ~rg~aLIInn~~f~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~-~~dlt~~em~~~l~~~~~~~h~~~D~~vv~ 94 (277)
T 1nw9_B 20 PCGHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFSSLHFMVEV-KGDLTAKKMVLALLELARQDHGALDCCVVV 94 (277)
T ss_dssp SCEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTEEEEE-EESCCHHHHHHHHHHHHHSCCTTCSEEEEE
T ss_pred cccEEEEEeCcccCCCCCCCCCCCcHHHHHHHHHHHHHCCCEEEE-EcCCCHHHHHHHHHHHHHhhcccCCeEEEE
Confidence 456788888762 3799999999999999764 5588999889999999653 35555554
Done!