Your job contains 1 sequence.
>psy16633
AIAKLGWLEPTLIQVYFELPFTFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLV
RARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSR
DVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLV
FSFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQL
AHYHILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSEL
PAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSN
VINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMND
VNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRSNYFEDNPTDLETLRHDKALYT
VRIQSHLADVPDYIVPPALKKLARIEDDGDEDVRAEPITDEEYNKQYEEYKKRSKENERN
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy16633
(540 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0001565 - symbol:Hlc "Helicase" species:7227 "Dros... 1235 1.1e-129 2
ZFIN|ZDB-GENE-040825-3 - symbol:ddx56 "DEAD (Asp-Glu-Ala-... 1227 1.6e-128 2
UNIPROTKB|Q9NY93 - symbol:DDX56 "Probable ATP-dependent R... 1114 4.7e-116 2
MGI|MGI:1277172 - symbol:Ddx56 "DEAD (Asp-Glu-Ala-Asp) bo... 1108 2.0e-115 2
UNIPROTKB|G3V6M5 - symbol:Ddx56 "Protein Ddx56" species:1... 1102 8.7e-115 2
UNIPROTKB|Q3SZ40 - symbol:DDX56 "Probable ATP-dependent R... 1100 1.4e-114 2
UNIPROTKB|F1SSH6 - symbol:DDX56 "Uncharacterized protein"... 1040 3.1e-108 2
SGD|S000004266 - symbol:DBP9 "DEAD-box protein required f... 645 1.1e-98 4
ASPGD|ASPL0000000390 - symbol:AN6374 species:162425 "Emer... 683 3.0e-98 3
UNIPROTKB|G3V0G3 - symbol:DDX56 "DEAD (Asp-Glu-Ala-Asp) b... 945 3.3e-98 2
CGD|CAL0004220 - symbol:orf19.3393 species:5476 "Candida ... 599 4.5e-96 4
UNIPROTKB|Q5A4P9 - symbol:DBP9 "ATP-dependent RNA helicas... 599 4.5e-96 4
DICTYBASE|DDB_G0280407 - symbol:ddx56 "DEAD/DEAH box heli... 704 4.9e-96 3
RGD|1303195 - symbol:Ddx56 "DEAD (Asp-Glu-Ala-Asp) box he... 929 2.7e-93 1
UNIPROTKB|H7C3E9 - symbol:DDX56 "Probable ATP-dependent R... 907 5.7e-91 1
UNIPROTKB|J9NSI3 - symbol:DDX56 "Uncharacterized protein"... 866 1.3e-86 1
POMBASE|SPCC1494.06c - symbol:SPCC1494.06c "ATP-dependent... 660 1.7e-86 2
WB|WBGene00016073 - symbol:C24H12.4 species:6239 "Caenorh... 749 3.1e-74 1
TAIR|locus:2116920 - symbol:AT4G34910 species:3702 "Arabi... 716 9.9e-71 1
ZFIN|ZDB-GENE-050522-359 - symbol:zgc:112350 "zgc:112350"... 381 1.7e-49 3
UNIPROTKB|Q29S22 - symbol:DDX47 "Probable ATP-dependent R... 379 1.7e-49 3
MGI|MGI:1915005 - symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) bo... 379 1.7e-49 3
UNIPROTKB|G3V727 - symbol:Ddx47 "Protein Ddx47" species:1... 379 1.7e-49 3
UNIPROTKB|Q9H0S4 - symbol:DDX47 "Probable ATP-dependent R... 370 1.5e-48 3
UNIPROTKB|E2RN03 - symbol:DDX47 "Uncharacterized protein"... 369 1.9e-48 3
UNIPROTKB|Q5ZLB0 - symbol:DDX47 "Uncharacterized protein"... 364 1.3e-47 3
UNIPROTKB|I3L976 - symbol:DDX47 "Uncharacterized protein"... 379 4.2e-47 3
UNIPROTKB|Q8EBV7 - symbol:SO_3388 "ATP-dependent RNA heli... 373 2.3e-46 3
TIGR_CMR|SO_3388 - symbol:SO_3388 "ATP-dependent RNA heli... 373 2.3e-46 3
UNIPROTKB|Q83DM8 - symbol:rhlE "ATP-dependent RNA helicas... 357 6.5e-46 3
TIGR_CMR|CBU_0670 - symbol:CBU_0670 "ATP-dependent RNA he... 357 6.5e-46 3
UNIPROTKB|F8WDT8 - symbol:DDX56 "Probable ATP-dependent R... 448 7.6e-46 2
TAIR|locus:2173517 - symbol:AT5G60990 species:3702 "Arabi... 355 1.5e-45 3
UNIPROTKB|Q5L3G9 - symbol:cshA "DEAD-box ATP-dependent RN... 371 1.6e-45 2
UNIPROTKB|P25888 - symbol:rhlE "ATP-dependent RNA helicas... 360 1.6e-45 3
TIGR_CMR|GSU_0522 - symbol:GSU_0522 "ATP-dependent RNA he... 366 6.7e-45 2
UNIPROTKB|Q48AV0 - symbol:CPS_0042 "ATP-dependent RNA hel... 359 1.0e-44 2
TIGR_CMR|CPS_0042 - symbol:CPS_0042 "ATP-dependent RNA he... 359 1.0e-44 2
TIGR_CMR|GSU_0914 - symbol:GSU_0914 "ATP-dependent RNA he... 374 1.8e-44 2
POMBASE|SPAC31A2.07c - symbol:dbp10 "ATP-dependent RNA he... 470 7.3e-44 1
UNIPROTKB|P96614 - symbol:cshA "DEAD-box ATP-dependent RN... 359 3.0e-43 2
CGD|CAL0000864 - symbol:DRS1 species:5476 "Candida albica... 382 3.6e-43 2
UNIPROTKB|Q5ACK7 - symbol:DRS1 "ATP-dependent RNA helicas... 382 3.6e-43 2
TIGR_CMR|SO_1383 - symbol:SO_1383 "ATP-dependent RNA heli... 352 7.2e-43 2
TIGR_CMR|CPS_1418 - symbol:CPS_1418 "ATP-dependent RNA he... 334 1.0e-42 3
SGD|S000003931 - symbol:DRS1 "Nucleolar DEAD-box protein ... 382 1.7e-42 2
GENEDB_PFALCIPARUM|PFB0860c - symbol:PFB0860c "RNA helica... 366 2.9e-42 3
UNIPROTKB|O96264 - symbol:PFB0860c "DEAD/DEAH box helicas... 366 2.9e-42 3
UNIPROTKB|Q65N62 - symbol:cshA "DEAD-box ATP-dependent RN... 351 3.1e-42 2
TAIR|locus:2130918 - symbol:AT4G16630 species:3702 "Arabi... 383 3.8e-42 2
UNIPROTKB|Q8EI96 - symbol:srmB "ATP-dependent RNA helicas... 347 4.0e-42 2
TIGR_CMR|SO_0947 - symbol:SO_0947 "ATP-dependent RNA heli... 347 4.0e-42 2
TIGR_CMR|CPS_4097 - symbol:CPS_4097 "ATP-dependent RNA he... 338 9.5e-42 2
POMBASE|SPAC823.08c - symbol:SPAC823.08c "ATP-dependent R... 346 2.2e-41 2
TIGR_CMR|CPS_3401 - symbol:CPS_3401 "ATP-dependent RNA he... 366 4.1e-41 2
UNIPROTKB|Q73EU1 - symbol:cshA "DEAD-box ATP-dependent RN... 360 5.3e-41 2
UNIPROTKB|A0R8U6 - symbol:cshA "DEAD-box ATP-dependent RN... 360 6.2e-41 2
UNIPROTKB|Q63GX5 - symbol:cshA "DEAD-box ATP-dependent RN... 360 6.2e-41 2
UNIPROTKB|Q6HPE6 - symbol:cshA "DEAD-box ATP-dependent RN... 360 6.2e-41 2
UNIPROTKB|Q81VG0 - symbol:cshA "DEAD-box ATP-dependent RN... 360 6.2e-41 2
TIGR_CMR|BA_0247 - symbol:BA_0247 "ATP-dependent RNA heli... 360 6.2e-41 2
UNIPROTKB|Q81IT9 - symbol:cshA "DEAD-box ATP-dependent RN... 360 7.8e-41 2
UNIPROTKB|A1A4H6 - symbol:DDX27 "Probable ATP-dependent R... 372 1.6e-40 2
MGI|MGI:2385884 - symbol:Ddx27 "DEAD (Asp-Glu-Ala-Asp) bo... 372 1.9e-40 2
UNIPROTKB|Q9KLH6 - symbol:VC_A0768 "ATP-dependent RNA hel... 346 2.5e-40 2
TIGR_CMR|VC_A0768 - symbol:VC_A0768 "ATP-dependent RNA he... 346 2.5e-40 2
UNIPROTKB|P0A9P6 - symbol:deaD "DeaD, DEAD-box RNA helica... 344 3.3e-40 2
FB|FBgn0032919 - symbol:CG9253 species:7227 "Drosophila m... 356 4.1e-40 2
UNIPROTKB|Q8EDC4 - symbol:SO_2838 "ATP-dependent RNA heli... 337 4.8e-40 2
TIGR_CMR|SO_2838 - symbol:SO_2838 "ATP-dependent RNA heli... 337 4.8e-40 2
TIGR_CMR|SO_4034 - symbol:SO_4034 "ATP-dependent RNA heli... 356 9.4e-40 2
UNIPROTKB|Q96GQ7 - symbol:DDX27 "Probable ATP-dependent R... 368 1.4e-39 2
TIGR_CMR|DET_0183 - symbol:DET_0183 "ATP-dependent RNA he... 356 1.6e-39 2
UNIPROTKB|Q8EJQ5 - symbol:rhlB "ATP-dependent RNA helicas... 334 1.8e-39 2
TIGR_CMR|SO_0407 - symbol:SO_0407 "ATP-dependent RNA heli... 334 1.8e-39 2
UNIPROTKB|F1Q073 - symbol:DDX27 "Uncharacterized protein"... 365 1.9e-39 2
UNIPROTKB|J9P9C6 - symbol:DDX27 "Uncharacterized protein"... 365 2.2e-39 2
UNIPROTKB|P21507 - symbol:srmB "SrmB, DEAD-box RNA helica... 326 3.5e-39 2
ASPGD|ASPL0000054300 - symbol:AN0583 species:162425 "Emer... 427 4.5e-39 1
UNIPROTKB|E1BGI6 - symbol:DDX54 "Uncharacterized protein"... 370 4.6e-39 2
UNIPROTKB|Q4K8U0 - symbol:deaD "Cold-shock DEAD box prote... 356 6.1e-39 2
TIGR_CMR|GSU_0189 - symbol:GSU_0189 "ATP-dependent RNA he... 339 8.0e-39 2
UNIPROTKB|F1NTK9 - symbol:DDX54 "Uncharacterized protein"... 365 9.1e-39 2
TIGR_CMR|CPS_2658 - symbol:CPS_2658 "ATP-dependent RNA he... 328 1.2e-38 2
UNIPROTKB|Q9KMW4 - symbol:VC_A0204 "ATP-dependent RNA hel... 334 1.2e-38 2
TIGR_CMR|VC_A0204 - symbol:VC_A0204 "ATP-dependent RNA he... 334 1.2e-38 2
UNIPROTKB|Q48PB7 - symbol:PSPPH_0449 "ATP-dependent RNA h... 359 1.4e-38 2
UNIPROTKB|Q81QF0 - symbol:BAS2301 "ATP-dependent RNA heli... 326 2.7e-38 2
TIGR_CMR|BA_2475 - symbol:BA_2475 "ATP-dependent RNA heli... 326 2.7e-38 2
FB|FBgn0052344 - symbol:CG32344 species:7227 "Drosophila ... 374 3.1e-38 2
UNIPROTKB|Q3SZ54 - symbol:EIF4A1 "Eukaryotic initiation f... 319 3.2e-38 2
UNIPROTKB|F1P895 - symbol:EIF4A1 "Uncharacterized protein... 319 3.2e-38 2
UNIPROTKB|J9NY67 - symbol:EIF4A1 "Uncharacterized protein... 319 3.2e-38 2
UNIPROTKB|P60842 - symbol:EIF4A1 "Eukaryotic initiation f... 319 3.2e-38 2
UNIPROTKB|A6M928 - symbol:EIF4A1 "Uncharacterized protein... 319 3.2e-38 2
MGI|MGI:95303 - symbol:Eif4a1 "eukaryotic translation ini... 319 3.2e-38 2
UNIPROTKB|Q6P3V8 - symbol:Eif4a1 "Protein Eif4a1" species... 319 3.2e-38 2
UNIPROTKB|F1NQV5 - symbol:DDX27 "Uncharacterized protein"... 359 3.2e-38 2
UNIPROTKB|Q4K4H4 - symbol:rhlE_2 "Putative ATP-dependent ... 355 4.7e-38 2
TAIR|locus:2032910 - symbol:RH36 "RNA helicase 36" specie... 342 6.3e-38 2
WARNING: Descriptions of 763 database sequences were not reported due to the
limiting value of parameter V = 100.
>FB|FBgn0001565 [details] [associations]
symbol:Hlc "Helicase" species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0022008
EMBL:AE014298 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 EMBL:AF017777 InterPro:IPR014014
PROSITE:PS51195 KO:K14810 GeneTree:ENSGT00550000074946 HSSP:P10081
FlyBase:FBgn0001565 EMBL:AY070624 PIR:T08433 RefSeq:NP_523434.2
UniGene:Dm.2805 SMR:Q9VRI0 STRING:Q9VRI0 EnsemblMetazoa:FBtr0077221
GeneID:33118 KEGG:dme:Dmel_CG1666 UCSC:CG1666-RA CTD:33118
InParanoid:Q9VRI0 OMA:THRIGRA GenomeRNAi:33118 NextBio:781998
Uniprot:Q9VRI0
Length = 560
Score = 1235 (439.8 bits), Expect = 1.1e-129, Sum P(2) = 1.1e-129
Identities = 260/502 (51%), Positives = 341/502 (67%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+A+LGW +PTLIQ AIPL+L+ KDV+VRARTGSGKT +A+P+IQKI+N K A
Sbjct: 21 LKAVAQLGWQQPTLIQSTAIPLLLEGKDVVVRARTGSGKTATYALPLIQKILNSKLNASE 80
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQV-DVSVQEPLLVERPDIVV 148
Q A+VL+P+KELC Q K I++L C + V+ DI++ D Q L E PDIVV
Sbjct: 81 QYVSAVVLAPTKELCRQSRKVIEQLVESCGKVVRVADIADSSNDTVTQRHALSESPDIVV 140
Query: 149 ATPARALAHLKA-KTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
ATPA LA+ +A +DLK +E +++DEADLVF++GYE D K ++K LP +YQA+L SA
Sbjct: 141 ATPANLLAYAEAGSVVDLKH-VETLVVDEADLVFAYGYEKDFKRLIKHLPPIYQAVLVSA 199
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
TL++DV+ +K L L NPV LKLEEP + P QL+H ILA+E++K ILY LLKL L++G
Sbjct: 200 TLTDDVVRMKGLCLNNPVTLKLEEPELVPQDQLSHQRILAEENDKPAILYALLKLRLIRG 259
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
K+IIFVN++D+CYK++L+LEQF I CVLNSELPA R H + QFN+G YD+IIASDE
Sbjct: 260 KSIIFVNSIDRCYKVRLFLEQFGIRACVLNSELPANIRIHTISQFNKGTYDIIIASDEHH 319
Query: 328 LETPQINSTNNRKRKR--DKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKN 385
+E P S NRK R D ES SRGIDFQ V+NVINFDFP D+ YIHRAGRTARG N
Sbjct: 320 MEKPGGKSATNRKSPRSGDMESSASRGIDFQCVNNVINFDFPRDVTSYIHRAGRTARGNN 379
Query: 386 QGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDE 445
+G+ LSFVS++E + ND E+ L + E + IIK YQF ++E
Sbjct: 380 KGSVLSFVSMKESKV-NDSV--------EKKLCDSFAA------QEGEQIIKNYQFKMEE 424
Query: 446 VKGFEYRAKDAWRS-------------------N------YFEDNPTDLETLRHDKALYT 480
V+ F YRA+D WR+ N +FE+N DL+ LRHDK L
Sbjct: 425 VESFRYRAQDCWRAATRVAVHDTRIREIKIEILNCEKLKAFFEENKRDLQALRHDKPLRA 484
Query: 481 VRIQSHLADVPDYIVPPALKKL 502
+++QSHL+D+P+YIVP ALK++
Sbjct: 485 IKVQSHLSDMPEYIVPKALKRV 506
Score = 58 (25.5 bits), Expect = 1.1e-129, Sum P(2) = 1.1e-129
Identities = 10/14 (71%), Positives = 13/14 (92%)
Query: 1 AIAKLGWLEPTLIQ 14
A+A+LGW +PTLIQ
Sbjct: 23 AVAQLGWQQPTLIQ 36
>ZFIN|ZDB-GENE-040825-3 [details] [associations]
symbol:ddx56 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
56" species:7955 "Danio rerio" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-040825-3 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K14810 OMA:TFLMSAT
GeneTree:ENSGT00550000074946 CTD:54606 HOVERGEN:HBG051334
EMBL:CR394525 EMBL:AY648812 IPI:IPI00491475 RefSeq:NP_001003876.1
UniGene:Dr.79779 STRING:Q6DRE7 Ensembl:ENSDART00000034555
GeneID:445399 KEGG:dre:445399 InParanoid:Q6DRE7 NextBio:20832104
Uniprot:Q6DRE7
Length = 557
Score = 1227 (437.0 bits), Expect = 1.6e-128, Sum P(2) = 1.6e-128
Identities = 257/508 (50%), Positives = 344/508 (67%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+A LGW +PTLIQE+AIPL L+ KD+L RARTGSGKT A+A+P+IQ+++ KQT +
Sbjct: 18 LKALADLGWSQPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAVPLIQRVLTSKQTVRE 77
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
Q +A+VL P+KEL Q+ I++LT CSRDV+ DIS + D+S Q+P+L+E+PDIVV+
Sbjct: 78 QAVRAVVLVPTKELGQQVQTMIRQLTAYCSRDVRVADISGKADLSAQKPILMEKPDIVVS 137
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP+R AH+ A+ L L SSLE+++IDEADL+FSFG+E D+K +L LPK+YQA L SATL
Sbjct: 138 TPSRIQAHINAQNLQLHSSLEMLVIDEADLLFSFGFEADLKNLLCHLPKIYQAFLMSATL 197
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
++DV +LK L+L NPV LKL+ + SQL + I +E++K ++YT+LKL L+QGKT
Sbjct: 198 NDDVQALKELVLHNPVTLKLQGSQLPDSSQLQQFSIKCEEEDKFLLIYTMLKLGLIQGKT 257
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
++FV+ VD+ Y+LKL+LEQF I CVLNSELP +RCH + QFNQG Y+ IIASDE+ LE
Sbjct: 258 LLFVSDVDRSYRLKLFLEQFSIPACVLNSELPVHSRCHIISQFNQGFYNYIIASDEQGLE 317
Query: 330 TP----QINSTNNRKRK------RDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGR 379
+P Q +K+K +DKE GVSRGIDF VSNVINFDFP ++ YIHR GR
Sbjct: 318 SPAGSSQKTQEKGKKKKGTGKKGKDKEYGVSRGIDFHNVSNVINFDFPTSVESYIHRVGR 377
Query: 380 TARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPY 439
TAR N GTALSF+S E LS +S E L D N + ++KPY
Sbjct: 378 TARADNPGTALSFISHAE---------LSMLSEVENALTGDSN----------NCVLKPY 418
Query: 440 QFNLDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRH 474
+F ++E++GF YR +D RS YFEDNP DL+ LRH
Sbjct: 419 EFRMEEIEGFRYRCRDGMRSVTKQAVKEARLKEIKQELLNSEKLKTYFEDNPRDLQLLRH 478
Query: 475 DKALYTVRIQSHLADVPDYIVPPALKKL 502
DK L+ I+ H+ +VP+Y++P ALK L
Sbjct: 479 DKDLHPAIIKPHMKNVPEYLIPTALKSL 506
Score = 55 (24.4 bits), Expect = 1.6e-128, Sum P(2) = 1.6e-128
Identities = 10/14 (71%), Positives = 12/14 (85%)
Query: 1 AIAKLGWLEPTLIQ 14
A+A LGW +PTLIQ
Sbjct: 20 ALADLGWSQPTLIQ 33
>UNIPROTKB|Q9NY93 [details] [associations]
symbol:DDX56 "Probable ATP-dependent RNA helicase DDX56"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 GO:GO:0003723 EMBL:CH236960 EMBL:CH471128
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14810 HOGENOM:HOG000253015 OMA:TFLMSAT
CleanEx:HS_DDX21 CTD:54606 HOVERGEN:HBG051334 OrthoDB:EOG47H5PT
EMBL:AJ131712 EMBL:AF247666 EMBL:AL136700 EMBL:AK022774
EMBL:AK315363 EMBL:CR457213 EMBL:AC004938 EMBL:BC001235
IPI:IPI00302281 IPI:IPI00925037 RefSeq:NP_001244118.1
RefSeq:NP_061955.1 UniGene:Hs.654762 ProteinModelPortal:Q9NY93
SMR:Q9NY93 IntAct:Q9NY93 STRING:Q9NY93 PhosphoSite:Q9NY93
DMDM:20139238 SWISS-2DPAGE:Q9NY93 PaxDb:Q9NY93 PRIDE:Q9NY93
DNASU:54606 Ensembl:ENST00000258772 Ensembl:ENST00000431640
GeneID:54606 KEGG:hsa:54606 UCSC:uc003tlg.3 GeneCards:GC07M044571
HGNC:HGNC:18193 HPA:HPA019749 MIM:608023 neXtProt:NX_Q9NY93
PharmGKB:PA134916346 InParanoid:Q9NY93 PhylomeDB:Q9NY93
GenomeRNAi:54606 NextBio:57133 ArrayExpress:Q9NY93 Bgee:Q9NY93
CleanEx:HS_DDX56 Genevestigator:Q9NY93 GermOnline:ENSG00000136271
Uniprot:Q9NY93
Length = 547
Score = 1114 (397.2 bits), Expect = 4.7e-116, Sum P(2) = 4.7e-116
Identities = 237/507 (46%), Positives = 326/507 (64%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+ LGW PTLIQE+AIPL L+ KD+L RARTGSGKT A+AIPM+Q +++ K T V
Sbjct: 19 LQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQLLLHRKATGPV 78
Query: 90 --QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
Q + LVL P+KEL Q IQ+L C+RDV+ ++S D Q +L+E+PD+V
Sbjct: 79 VEQAVRGLVLVPTKELARQAQSMIQQLATYCARDVRVANVSAAEDSVSQRAVLMEKPDVV 138
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
V TP+R L+HL+ +L L+ SLE++++DEADL+FSFG+E+++K++L LP++YQA L SA
Sbjct: 139 VGTPSRILSHLQQDSLKLRDSLELLVVDEADLLFSFGFEEELKSLLCHLPRIYQAFLMSA 198
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQ-EDEKATILYTLLKLNLVQ 266
T +EDV +LK LIL NPV LKL+E + QL + ++ + E++K +LY LLKL+L++
Sbjct: 199 TFNEDVQALKELILHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLLLYALLKLSLIR 258
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
GK+++FVNT+++ Y+L+L+LEQF I TCVLN ELP ++RCH + QFNQG YD +IA+D +
Sbjct: 259 GKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGELPLRSRCHIISQFNQGFYDCVIATDAE 318
Query: 327 ALETPQINSTNNRKRKRDK----ESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTAR 382
L P R K DK E+GV+RGIDF VS V+NFD P + YIHRAGRTAR
Sbjct: 319 VLGAPVKGKRRGRGPKGDKASDPEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTAR 378
Query: 383 GKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFN 442
N G L+FV EQ F + ++L++ N I+ PYQF
Sbjct: 379 ANNPGIVLTFVLPTEQ----------FHLGKIEELLSGENR---------GPILLPYQFR 419
Query: 443 LDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKA 477
++E++GF YR +DA RS YFEDNP DL+ LRHD
Sbjct: 420 MEEIEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQLLRHDLP 479
Query: 478 LYTVRIQSHLADVPDYIVPPALKKLAR 504
L+ ++ HL VPDY+VPPAL+ L R
Sbjct: 480 LHPAVVKPHLGHVPDYLVPPALRGLVR 506
Score = 50 (22.7 bits), Expect = 4.7e-116, Sum P(2) = 4.7e-116
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 1 AIAKLGWLEPTLIQ 14
A+ LGW PTLIQ
Sbjct: 21 AVTDLGWSRPTLIQ 34
>MGI|MGI:1277172 [details] [associations]
symbol:Ddx56 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 56"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1277172 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14810 HOGENOM:HOG000253015 OMA:TFLMSAT
GeneTree:ENSGT00550000074946 CTD:54606 HOVERGEN:HBG051334
OrthoDB:EOG47H5PT EMBL:AK011136 EMBL:AK077514 EMBL:BC018291
IPI:IPI00132957 RefSeq:NP_080814.1 UniGene:Mm.29810
ProteinModelPortal:Q9D0R4 SMR:Q9D0R4 STRING:Q9D0R4
PhosphoSite:Q9D0R4 PaxDb:Q9D0R4 PRIDE:Q9D0R4
Ensembl:ENSMUST00000004507 GeneID:52513 KEGG:mmu:52513
InParanoid:Q9D0R4 ChiTaRS:DDX56 NextBio:309069 Bgee:Q9D0R4
CleanEx:MM_DDX56 Genevestigator:Q9D0R4
GermOnline:ENSMUSG00000004393 Uniprot:Q9D0R4
Length = 546
Score = 1108 (395.1 bits), Expect = 2.0e-115, Sum P(2) = 2.0e-115
Identities = 233/506 (46%), Positives = 325/506 (64%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+ LGW PTLIQE+AIPL L+ KD+L RARTGSGKT A+AIPM+Q +++ K T V
Sbjct: 19 LQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQSLLHKKATGPV 78
Query: 90 QE--TKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
E + LVL P+KEL Q IQ+L C+RDV+ ++S D + Q +L+E+PD+V
Sbjct: 79 MEQAVRGLVLVPTKELARQAQAMIQQLAAYCARDVRVANVSAAEDSASQRAVLMEKPDVV 138
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
V TP+R L+HL+ TL L+ SLE++++DEADL+FSFG+ED++K++L LP++YQA L SA
Sbjct: 139 VGTPSRVLSHLQQNTLKLRDSLELLVVDEADLLFSFGFEDELKSLLCHLPRIYQAFLMSA 198
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQ-EDEKATILYTLLKLNLVQ 266
T +EDV +LK L+L NPV LKL+E + QL + ++ + E++K +LY LLKL+L++
Sbjct: 199 TFNEDVQTLKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLLLYALLKLSLIR 258
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
GK ++FVNT+++ Y+L+L+LEQF I +CVLN ELP ++RCH + QFNQGLYD +IA+D +
Sbjct: 259 GKALLFVNTLERGYRLRLFLEQFSIPSCVLNGELPLRSRCHIISQFNQGLYDCVIATDAE 318
Query: 327 ALETPQINSTNNRKRKR-----DKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTA 381
L PQ+ + + D ESGV+RGIDF VS V+NFD P + Y+HRAGRTA
Sbjct: 319 ILG-PQVKGKRRGRGSKGNKASDPESGVARGIDFHHVSAVLNFDLPPTAEAYVHRAGRTA 377
Query: 382 RGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQF 441
R N G L+FV EQ + + +DL++ E I+ PYQF
Sbjct: 378 RANNPGIVLTFVLPAEQPFLG----------KIEDLLSGEGEAP---------ILLPYQF 418
Query: 442 NLDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDK 476
++E++ F YR +DA RS YFEDNP DL+ LRHD
Sbjct: 419 QMEEIESFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQLLRHDL 478
Query: 477 ALYTVRIQSHLADVPDYIVPPALKKL 502
L+ ++ HL VPDY+VP AL+ L
Sbjct: 479 PLHPAVVKPHLGHVPDYLVPAALRGL 504
Score = 50 (22.7 bits), Expect = 2.0e-115, Sum P(2) = 2.0e-115
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 1 AIAKLGWLEPTLIQ 14
A+ LGW PTLIQ
Sbjct: 21 AVTDLGWSRPTLIQ 34
>UNIPROTKB|G3V6M5 [details] [associations]
symbol:Ddx56 "Protein Ddx56" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1303195
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:TFLMSAT GeneTree:ENSGT00550000074946 EMBL:CH473963
UniGene:Rn.39458 Ensembl:ENSRNOT00000006642 Uniprot:G3V6M5
Length = 546
Score = 1102 (393.0 bits), Expect = 8.7e-115, Sum P(2) = 8.7e-115
Identities = 234/506 (46%), Positives = 327/506 (64%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+ LGW PTLIQE+AIPL L+ KD+L RARTGSGKT A+AIPM+Q +++ K T V
Sbjct: 19 LQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQLLLHKKATGPV 78
Query: 90 QE--TKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
E + LVL P+KEL Q IQ+L C+RDV+ ++S D + Q +L+E+PD+V
Sbjct: 79 MEQAVRGLVLVPTKELARQAQSMIQQLASYCARDVRVANVSAAEDSASQRAVLMEKPDVV 138
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
V TP+R L HL+ K L L+ SLE++++DEADL+FSFG+ED++K++L LP++YQA L SA
Sbjct: 139 VGTPSRILNHLQQKNLKLRDSLELLVVDEADLLFSFGFEDELKSLLCHLPRIYQAFLMSA 198
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQ-EDEKATILYTLLKLNLVQ 266
T +EDV +LK L+L NPV LKL+E + QL + ++ + E++K +LY LLKL+L++
Sbjct: 199 TFNEDVQTLKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLLLYALLKLSLIR 258
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
GK ++FVNT+++ Y+L+L+LEQF I +CVLN ELP ++RCH + QFNQGLYD +IA+D +
Sbjct: 259 GKALLFVNTLERGYRLRLFLEQFSIPSCVLNGELPLRSRCHIISQFNQGLYDCVIATDAE 318
Query: 327 ALETPQINSTNN-RKRKRDK----ESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTA 381
L PQ+ + R K DK ESGV+RGIDF VS V+NFD P + Y+HRAGRTA
Sbjct: 319 ILG-PQVKAKRQGRGSKGDKASDPESGVARGIDFHHVSAVLNFDLPPTAEAYVHRAGRTA 377
Query: 382 RGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQF 441
R N G L+FV EQ + + ++L++ + I+ PYQF
Sbjct: 378 RANNPGIVLTFVLPTEQSSLG----------KIEELLSGEGQAP---------ILLPYQF 418
Query: 442 NLDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDK 476
++E++ F YR +DA RS YFEDNP DL+ LRHD
Sbjct: 419 QMEEIESFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQLLRHDL 478
Query: 477 ALYTVRIQSHLADVPDYIVPPALKKL 502
L+ ++ HL +VPDY+VP AL+ L
Sbjct: 479 PLHPAVVKPHLGNVPDYLVPAALRGL 504
Score = 50 (22.7 bits), Expect = 8.7e-115, Sum P(2) = 8.7e-115
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 1 AIAKLGWLEPTLIQ 14
A+ LGW PTLIQ
Sbjct: 21 AVTDLGWSRPTLIQ 34
>UNIPROTKB|Q3SZ40 [details] [associations]
symbol:DDX56 "Probable ATP-dependent RNA helicase DDX56"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14810 HOGENOM:HOG000253015 OMA:TFLMSAT
GeneTree:ENSGT00550000074946 HSSP:P60842 EMBL:BC103169
IPI:IPI00695179 RefSeq:NP_001029501.1 UniGene:Bt.48952
ProteinModelPortal:Q3SZ40 STRING:Q3SZ40 PRIDE:Q3SZ40
Ensembl:ENSBTAT00000014014 GeneID:508728 KEGG:bta:508728 CTD:54606
HOVERGEN:HBG051334 InParanoid:Q3SZ40 OrthoDB:EOG47H5PT
NextBio:20868656 Uniprot:Q3SZ40
Length = 546
Score = 1100 (392.3 bits), Expect = 1.4e-114, Sum P(2) = 1.4e-114
Identities = 232/505 (45%), Positives = 324/505 (64%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+ LGW PTLIQE+AIPL L+ KD+L RARTGSGKT A+AIPM+Q +++ K T V
Sbjct: 19 LQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQLLLHRKATGPV 78
Query: 90 --QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
Q +ALVL P+KEL Q IQ+L C+RD++ ++S D + Q +L+E+PD+V
Sbjct: 79 VEQAVRALVLVPTKELARQAQSMIQQLAAYCARDIRVANVSAAEDSASQRAVLMEKPDVV 138
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
V TP+R L HL+ L L+ S+E++++DEADL+FSFG+E+++K++L LP++YQA L SA
Sbjct: 139 VGTPSRILNHLQQDNLKLRDSMELLVVDEADLLFSFGFEEELKSLLCHLPRIYQAFLMSA 198
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQ-EDEKATILYTLLKLNLVQ 266
T +EDV +LK L+L NPV LKL+E + QL + ++ + E++K +LY LLKL+L++
Sbjct: 199 TFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLLLYALLKLSLIR 258
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
GK+++FVNT+++ Y+L+L+LEQF I CVLN ELP ++RCH + QFNQG YD +IA+D +
Sbjct: 259 GKSLLFVNTLERSYRLRLFLEQFSIPACVLNGELPLRSRCHIISQFNQGFYDCVIATDAE 318
Query: 327 ALETPQINSTNNRKRKRDK----ESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTAR 382
L P + KRDK E+GV+RGIDF V V+NFD P + YIHRAGRTAR
Sbjct: 319 VLGPPVKGKHRGKGPKRDKASDPEAGVARGIDFHHVCAVLNFDLPPTPEAYIHRAGRTAR 378
Query: 383 GKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFN 442
N G L+FV EQ + G E+ L D ++ PYQF+
Sbjct: 379 ANNPGIVLTFVLPTEQSQL--GKI-------EELLSGDSGAP----------VLLPYQFH 419
Query: 443 LDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHDKA 477
++E++GF YR +DA RS YFEDNP DL+ LRHD
Sbjct: 420 MEEIEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQLLRHDLP 479
Query: 478 LYTVRIQSHLADVPDYIVPPALKKL 502
L+ ++ HL +VPDY+VPPAL+ L
Sbjct: 480 LHPAVVKPHLGNVPDYLVPPALRGL 504
Score = 50 (22.7 bits), Expect = 1.4e-114, Sum P(2) = 1.4e-114
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 1 AIAKLGWLEPTLIQ 14
A+ LGW PTLIQ
Sbjct: 21 AVTDLGWSRPTLIQ 34
>UNIPROTKB|F1SSH6 [details] [associations]
symbol:DDX56 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:TFLMSAT GeneTree:ENSGT00550000074946 EMBL:CU856650
Ensembl:ENSSSCT00000018227 Uniprot:F1SSH6
Length = 545
Score = 1040 (371.2 bits), Expect = 3.1e-108, Sum P(2) = 3.1e-108
Identities = 224/509 (44%), Positives = 317/509 (62%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQT--A 87
LQA+ LGW PTLIQE+ IPL L+ KD + A G GKT A+AIPM+Q +++ K A
Sbjct: 19 LQAVTDLGWSRPTLIQEK-IPLALEGKDSWLGAARGQGKTAAYAIPMLQLLLHRKAIGPA 77
Query: 88 QVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
Q + LVL P+K+L Q IQ+L C+RD++ ++S D + Q +L+E+PDIV
Sbjct: 78 VEQAVRGLVLVPTKDLARQAQSMIQQLAAYCARDIRVANVSAAEDSASQRAVLMEKPDIV 137
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
V TP+R L HL+ L L+ SLE++++DEADL+FSFG+E+++K++L LP++YQA L SA
Sbjct: 138 VGTPSRILNHLQQDNLKLRDSLELLVVDEADLLFSFGFEEELKSLLCHLPRIYQAFLMSA 197
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQ-EDEKATILYTLLKLNLVQ 266
T +EDV +LK L+L NPV LKL+E + QL + ++ + E++K +LY LLKL+L++
Sbjct: 198 TFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLLLYALLKLSLIR 257
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
GK+++FVNT+++ Y+L+L+LEQF I CVLN ELP ++RCH + QFNQGLYD +IA+D +
Sbjct: 258 GKSLLFVNTLERSYRLRLFLEQFSIPACVLNGELPLRSRCHIISQFNQGLYDCVIATDAE 317
Query: 327 ALETPQINSTNNR------KRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRT 380
L P R +R D E+GV+RGIDF V V+NFD P + YIHRAGRT
Sbjct: 318 VLGPPVKGKGKQRGKGPKGERASDPEAGVARGIDFHHVCAVLNFDLPPTPEAYIHRAGRT 377
Query: 381 ARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQ 440
AR N G L+FV EQ + + ++L++ N + PYQ
Sbjct: 378 ARANNPGIVLTFVLPTEQSHLG----------KIEELLSGENGAPA---------LLPYQ 418
Query: 441 FNLDEVKGFEYRAKDAWRS-------------------------NYFEDNPTDLETLRHD 475
F ++E++GF YR +DA RS YFEDNP DL+ LRHD
Sbjct: 419 FRMEEIEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQLLRHD 478
Query: 476 KALYTVRIQSHLADVPDYIVPPALKKLAR 504
L+ ++ HL +VPDY+VPPAL+ L R
Sbjct: 479 LPLHPAVVKPHLGNVPDYLVPPALRGLVR 507
Score = 50 (22.7 bits), Expect = 3.1e-108, Sum P(2) = 3.1e-108
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 1 AIAKLGWLEPTLIQ 14
A+ LGW PTLIQ
Sbjct: 21 AVTDLGWSRPTLIQ 34
>SGD|S000004266 [details] [associations]
symbol:DBP9 "DEAD-box protein required for 27S rRNA
processing" species:4932 "Saccharomyces cerevisiae" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0000463 "maturation
of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IMP] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IDA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IDA] [GO:0033680 "ATP-dependent DNA/RNA helicase
activity" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000004266 GO:GO:0005524
GO:GO:0005730 EMBL:BK006945 GO:GO:0003723 GO:GO:0004003
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000463
GO:GO:0004004 GO:GO:0033680 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:U17245 KO:K14810 HOGENOM:HOG000253015
OMA:TFLMSAT OrthoDB:EOG4DFSWQ EMBL:AY723847 PIR:S51412
RefSeq:NP_013378.1 ProteinModelPortal:Q06218 SMR:Q06218
DIP:DIP-4771N IntAct:Q06218 MINT:MINT-487200 STRING:Q06218
PaxDb:Q06218 PeptideAtlas:Q06218 EnsemblFungi:YLR276C GeneID:850982
KEGG:sce:YLR276C CYGD:YLR276c GeneTree:ENSGT00550000074946
NextBio:967498 Genevestigator:Q06218 GermOnline:YLR276C
Uniprot:Q06218
Length = 594
Score = 645 (232.1 bits), Expect = 1.1e-98, Sum P(4) = 1.1e-98
Identities = 136/344 (39%), Positives = 217/344 (63%)
Query: 16 YFELPFTFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNK-DVLVRARTGSGKTGA 71
Y + TF F + LQAI +G+ PTLIQ AIPL LQ K D++ +A TGSGKT A
Sbjct: 12 YIDDSTTFEAFHLDSRLLQAIKNIGFQYPTLIQSHAIPLALQQKRDIIAKAATGSGKTLA 71
Query: 72 FAIPMIQKIINLKQTAQVQE---TKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDIS 128
+ IP+I+ I+ K+T E T ++L P++EL Q++ +++L + CS+D++ ++IS
Sbjct: 72 YLIPVIETILEYKKTIDNGEENGTLGIILVPTRELAQQVYNVLEKLVLYCSKDIRTLNIS 131
Query: 129 EQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLK-SSLEIVIIDEADLVFSFGYED 187
+ SV LL+++P+I+V TP + L L+ K + + L+ +++DE DLV +FGY+D
Sbjct: 132 SDMSDSVLSTLLMDQPEIIVGTPGKLLDLLQTKINSISLNELKFLVVDEVDLVLTFGYQD 191
Query: 188 DMKAVLKFLP--KLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAP-VSQLAHYH 244
D+ + ++LP K Q L SATL++D+ +LK R+P ILK + I ++L Y+
Sbjct: 192 DLNKIGEYLPLKKNLQTFLMSATLNDDIQALKQKFCRSPAILKFNDEEINKNQNKLLQYY 251
Query: 245 ILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKA 304
+ E +K + Y + KLNL++GKT+IFVN +D+ Y+LKL +EQF I +C+LNSELP +
Sbjct: 252 VKVSEFDKFLLCYVIFKLNLIKGKTLIFVNNIDRGYRLKLVMEQFGIKSCILNSELPVNS 311
Query: 305 RCHAVYQFNQGLYDVIIASDEKAL---ETPQINSTNNRKRKRDK 345
R H V QFN+ +Y ++IA+D+ E +I +N + + +K
Sbjct: 312 RQHIVDQFNKNVYQLLIATDDTEYIKEEDDEIEEGHNTENQEEK 355
Score = 216 (81.1 bits), Expect = 1.1e-98, Sum P(4) = 1.1e-98
Identities = 51/141 (36%), Positives = 82/141 (58%)
Query: 324 DEKALE-TPQINSTNNRKRK----RDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAG 378
+EK+LE P+ + ++K+K +DKE GVSRG+DF+ V+ V+NFD P + Y+HR G
Sbjct: 353 EEKSLEGEPENDKKPSKKKKVQVKKDKEYGVSRGVDFKNVACVLNFDLPTTAKSYVHRVG 412
Query: 379 RTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKP 438
RTARG GTA+SFV ++ + + L E+ L + + L ++P
Sbjct: 413 RTARGGKTGTAISFVVPLKEFGKHKPSMLQTAKKDERILSRIIKQQSKLGLE-----LQP 467
Query: 439 YQFNLDEVKGFEYRAKDAWRS 459
Y+F+ +V+ F YR +D +R+
Sbjct: 468 YKFDQKQVEAFRYRMEDGFRA 488
Score = 125 (49.1 bits), Expect = 1.1e-98, Sum P(4) = 1.1e-98
Identities = 20/40 (50%), Positives = 31/40 (77%)
Query: 461 YFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPPALK 500
+FE+NP +L++LRHDK L+ R+Q HL VPDY++P + +
Sbjct: 515 HFEENPKELQSLRHDKELHPARVQQHLKRVPDYLLPESAR 554
Score = 50 (22.7 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 277 DKCYKLKLYLEQFKISTCVLNSELP--AKARCHAVYQFNQG 315
DK Y + ++ FK CVLN +LP AK+ H V + +G
Sbjct: 378 DKEYGVSRGVD-FKNVACVLNFDLPTTAKSYVHRVGRTARG 417
Score = 37 (18.1 bits), Expect = 1.1e-98, Sum P(4) = 1.1e-98
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 1 AIAKLGWLEPTLIQ 14
AI +G+ PTLIQ
Sbjct: 31 AIKNIGFQYPTLIQ 44
>ASPGD|ASPL0000000390 [details] [associations]
symbol:AN6374 species:162425 "Emericella nidulans"
[GO:0000463 "maturation of LSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IEA] [GO:0033680 "ATP-dependent DNA/RNA
helicase activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 EMBL:AACD01000107 EMBL:BN001301 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14810
RefSeq:XP_663978.1 ProteinModelPortal:Q5AZA6 STRING:Q5AZA6
EnsemblFungi:CADANIAT00006610 GeneID:2871271 KEGG:ani:AN6374.2
HOGENOM:HOG000253015 OMA:TFLMSAT OrthoDB:EOG4DFSWQ Uniprot:Q5AZA6
Length = 610
Score = 683 (245.5 bits), Expect = 3.0e-98, Sum P(3) = 3.0e-98
Identities = 145/321 (45%), Positives = 214/321 (66%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQT-AQV 89
QA+ K + +PT +Q +AIPL L+ KD+L RA+TGSGKT A+ +P++Q I+ K +
Sbjct: 41 QALVKEKFSKPTPVQAKAIPLALEGKDILARAKTGSGKTAAYVLPILQTILQKKAIDPSM 100
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ T L+L P++EL Q+ K I C +DV+ V+++++V +VQ+ +L + PDIVV+
Sbjct: 101 KATTGLILVPTRELAEQVQKVITTFAAFCGKDVRSVNLTQKVSDAVQKAMLADYPDIVVS 160
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TPAR +A+L L L++ L ++IDEADLV S+GYEDD+ A+ K +P+ Q L SATL
Sbjct: 161 TPARVIANLGTSALSLEN-LTHLVIDEADLVLSYGYEDDINALSKAIPRGVQTFLMSATL 219
Query: 210 SEDVLSLKHLILRNPVILKLEEPAI--APVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
+ +V +LK L R+PVILKLE+ A VSQ + EDEK + Y + KL L++G
Sbjct: 220 TAEVDTLKGLFCRSPVILKLEDKDDHGAGVSQFV---VKCAEDEKFLLTYVIFKLQLIKG 276
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
K IIFV +D+ Y+LKL+LEQF I +C+LNSELP +R H V +FN+G+YD+IIA+DE+
Sbjct: 277 KVIIFVGDIDRSYRLKLFLEQFGIKSCILNSELPVNSRIHVVEEFNKGVYDIIIAADEQE 336
Query: 328 LETPQINSTNNRKRKRDKESG 348
+ + + +RK K D G
Sbjct: 337 V----LGVSKSRKSK-DATEG 352
Score = 209 (78.6 bits), Expect = 3.0e-98, Sum P(3) = 3.0e-98
Identities = 53/143 (37%), Positives = 75/143 (52%)
Query: 321 IASDEKALETPQINSTNNRKRKR----DKESGVSRGIDFQFVSNVINFDFPLDIQCYIHR 376
+ SDE + + ST KR++ +K+ G+SRGIDFQ V+ V+NFD P + Y HR
Sbjct: 356 LLSDEDEETSAKAASTRTDKRRKLSSKEKDYGISRGIDFQNVACVLNFDLPTSSKSYTHR 415
Query: 377 AGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFII 436
GRT RG G ALSFV ++ + T++S E L + HE +
Sbjct: 416 IGRTGRGGKTGMALSFVIPADKYGKHKPTSISSAKHDEAVLAKIIKRQAKLG-HE----V 470
Query: 437 KPYQFNLDEVKGFEYRAKDAWRS 459
KPY F++ +V F YR DA R+
Sbjct: 471 KPYHFDMTQVDAFRYRMSDALRA 493
Score = 117 (46.2 bits), Expect = 3.0e-98, Sum P(3) = 3.0e-98
Identities = 28/75 (37%), Positives = 38/75 (50%)
Query: 443 LDEVKGFEYR---AKDAWRSNYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPPAL 499
+ E + E R K +FE+NP +L LRHD L RIQ HL +P+Y++P
Sbjct: 499 IQEARAREIRQELVKSEKLKRHFEENPEELRQLRHDGELRAARIQPHLKHIPEYLMPAKG 558
Query: 500 KKLARIEDDGDEDVR 514
KK ED G +R
Sbjct: 559 KKGISNEDVGFVSLR 573
Score = 41 (19.5 bits), Expect = 1.2e-69, Sum P(2) = 1.2e-69
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 461 YFEDNPTDLETLRHDKALYT--VRIQSHLA-DVPDY 493
Y + PT + + +HD+A+ ++ Q+ L +V Y
Sbjct: 438 YGKHKPTSISSAKHDEAVLAKIIKRQAKLGHEVKPY 473
>UNIPROTKB|G3V0G3 [details] [associations]
symbol:DDX56 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 56,
isoform CRA_a" species:9606 "Homo sapiens" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003676
EMBL:CH471128 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 EMBL:AC004938
UniGene:Hs.654762 HGNC:HGNC:18193 ProteinModelPortal:G3V0G3
SMR:G3V0G3 Ensembl:ENST00000421223 ArrayExpress:G3V0G3 Bgee:G3V0G3
Uniprot:G3V0G3
Length = 375
Score = 945 (337.7 bits), Expect = 3.3e-98, Sum P(2) = 3.3e-98
Identities = 184/357 (51%), Positives = 255/357 (71%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+ LGW PTLIQE+AIPL L+ KD+L RARTGSGKT A+AIPM+Q +++ K T V
Sbjct: 19 LQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQLLLHRKATGPV 78
Query: 90 --QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
Q + LVL P+KEL Q IQ+L C+RDV+ ++S D Q +L+E+PD+V
Sbjct: 79 VEQAVRGLVLVPTKELARQAQSMIQQLATYCARDVRVANVSAAEDSVSQRAVLMEKPDVV 138
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
V TP+R L+HL+ +L L+ SLE++++DEADL+FSFG+E+++K++L LP++YQA L SA
Sbjct: 139 VGTPSRILSHLQQDSLKLRDSLELLVVDEADLLFSFGFEEELKSLLCHLPRIYQAFLMSA 198
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQ-EDEKATILYTLLKLNLVQ 266
T +EDV +LK LIL NPV LKL+E + QL + ++ + E++K +LY LLKL+L++
Sbjct: 199 TFNEDVQALKELILHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLLLYALLKLSLIR 258
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
GK+++FVNT+++ Y+L+L+LEQF I TCVLN ELP ++RCH + QFNQG YD +IA+D +
Sbjct: 259 GKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGELPLRSRCHIISQFNQGFYDCVIATDAE 318
Query: 327 ALETPQINSTNNRKRKRDK----ESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGR 379
L P R K DK E+GV+RGIDF VS V+NFD P + YIHRAGR
Sbjct: 319 VLGAPVKGKRRGRGPKGDKASDPEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGR 375
Score = 50 (22.7 bits), Expect = 3.3e-98, Sum P(2) = 3.3e-98
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 1 AIAKLGWLEPTLIQ 14
A+ LGW PTLIQ
Sbjct: 21 AVTDLGWSRPTLIQ 34
>CGD|CAL0004220 [details] [associations]
symbol:orf19.3393 species:5476 "Candida albicans" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000463 "maturation of LSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0033680 "ATP-dependent DNA/RNA helicase activity" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0004220
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AL033391 EMBL:AACQ01000064
EMBL:AACQ01000065 GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_716643.1
RefSeq:XP_716703.1 ProteinModelPortal:Q5A4P9 STRING:Q5A4P9
GeneID:3641598 GeneID:3641657 KEGG:cal:CaO19.10896
KEGG:cal:CaO19.3393 KO:K14810 Uniprot:Q5A4P9
Length = 574
Score = 599 (215.9 bits), Expect = 4.5e-96, Sum P(4) = 4.5e-96
Identities = 132/322 (40%), Positives = 201/322 (62%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNK-DVLVRARTGSGKTGAFAIPMIQKIINLKQTAQ 88
LQAI +LG+ PTLIQ AIPL L+ K D++ +A TGSGKT A+ IP++ NL
Sbjct: 26 LQAIDQLGFSNPTLIQSSAIPLALEEKRDIIAKASTGSGKTAAYCIPIVN---NLLTDDS 82
Query: 89 VQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
Q K+++L P++EL NQ+ + +++L + + +++S V LLV +P+I++
Sbjct: 83 AQGIKSIILVPTRELSNQVFQFVEKLLTFSTNKINVLNLSSSYSDQVLNSLLVNKPEIII 142
Query: 149 ATPARALAHLKA--KTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLP--KLYQAIL 204
+TPA+ + L+ K +DL S+++ + IDE DLV SFGY DD+K + +LP K Q L
Sbjct: 143 STPAKLIQILEKNEKNIDL-STVKNLTIDEVDLVLSFGYLDDLKKLESYLPVKKNLQTFL 201
Query: 205 ASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNL 264
SAT+++D+ LK P ILKL E + A + L Y+ E +K + Y + KLNL
Sbjct: 202 MSATVNDDLDDLKQRYCTKPAILKLNEDS-ANQNNLVQYYAKTTEFDKFLLAYVIFKLNL 260
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
++GKTI FVN +D+ Y+LKL+LEQF I C+LNSELP +R H V +FN+ +Y ++IA+D
Sbjct: 261 IKGKTIAFVNNIDRGYRLKLFLEQFGIRCCILNSELPINSRLHIVEEFNKNVYHLLIATD 320
Query: 325 E-KALETPQINSTNNRKRKRDK 345
E L Q ++ + + +DK
Sbjct: 321 ETNELNEEQDDNEDGDEDTKDK 342
Score = 236 (88.1 bits), Expect = 4.5e-96, Sum P(4) = 4.5e-96
Identities = 59/136 (43%), Positives = 81/136 (59%)
Query: 324 DEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARG 383
D+ ET S + K K+DKE GVSRG+DF+ V+ V+NFD P + YIHR GRTAR
Sbjct: 341 DKGNAETKPKKSKKS-KFKQDKEYGVSRGVDFRNVACVLNFDLPTSSKAYIHRIGRTARA 399
Query: 384 KNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNL 443
G ALSFV L + TA S S ++ + V ++ ++ F IKPYQF++
Sbjct: 400 GKAGMALSFV-LPLSEFGKHKTA-SLASAKKDE---KVLGRIVKQQSKNGFEIKPYQFDM 454
Query: 444 DEVKGFEYRAKDAWRS 459
+V+GF YRA DA+R+
Sbjct: 455 KQVEGFRYRADDAFRA 470
Score = 122 (48.0 bits), Expect = 4.5e-96, Sum P(4) = 4.5e-96
Identities = 21/41 (51%), Positives = 31/41 (75%)
Query: 461 YFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPPALKK 501
+FE+NP DL +LRHDK L+ RIQS L +VP Y++P + ++
Sbjct: 497 FFEENPQDLASLRHDKELHPARIQSQLKNVPQYLLPESARQ 537
Score = 48 (22.0 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 36/150 (24%), Positives = 63/150 (42%)
Query: 277 DKCYKLKLYLEQFKISTCVLNSELP--AKARCHAVYQFNQ-GLYDVIIASDEKALETPQI 333
DK Y + ++ F+ CVLN +LP +KA H + + + G + ++ E +
Sbjct: 360 DKEYGVSRGVD-FRNVACVLNFDLPTSSKAYIHRIGRTARAGKAGMALSFVLPLSEFGKH 418
Query: 334 NSTNNRKRKRDKESGVSRGIDFQ----FVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
+ + K+D E + R + Q F FD ++ + +RA R Q TA
Sbjct: 419 KTASLASAKKD-EKVLGRIVKQQSKNGFEIKPYQFDMK-QVEGFRYRADDAFRAVTQ-TA 475
Query: 390 LSFVSLRE--QDLMNDGTALSFVSLREQDL 417
+ ++E +L+N F QDL
Sbjct: 476 VREARVKELKNELINSEKLKRFFEENPQDL 505
Score = 46 (21.3 bits), Expect = 0.00019, Sum P(3) = 0.00019
Identities = 42/200 (21%), Positives = 81/200 (40%)
Query: 255 ILYTLLKLNLVQG-KTIIFVNTVDKCYKLKLYLEQF-KISTCVLNSELPAKARCHAVYQF 312
I+ LL + QG K+II V T + ++ ++E+ ST +N + Y
Sbjct: 73 IVNNLLTDDSAQGIKSIILVPTRELSNQVFQFVEKLLTFSTNKINV-----LNLSSSYS- 126
Query: 313 NQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQC 372
+Q L +++ E + TP K +++ + + + V V++F + D++
Sbjct: 127 DQVLNSLLVNKPEIIISTPAKLIQILEKNEKNIDLSTVKNLTIDEVDLVLSFGYLDDLK- 185
Query: 373 YIHRAGRTARGKNQGTALSFVSLREQ--DLMNDG-TALSFVSLREQDL-MNDVNEYLMTN 428
KN T L ++ + DL T + + L E N++ +Y
Sbjct: 186 --KLESYLPVKKNLQTFLMSATVNDDLDDLKQRYCTKPAILKLNEDSANQNNLVQYYAKT 243
Query: 429 LHEDDFIIKPYQFNLDEVKG 448
D F++ F L+ +KG
Sbjct: 244 TEFDKFLLAYVIFKLNLIKG 263
Score = 41 (19.5 bits), Expect = 4.5e-96, Sum P(4) = 4.5e-96
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 1 AIAKLGWLEPTLIQ 14
AI +LG+ PTLIQ
Sbjct: 28 AIDQLGFSNPTLIQ 41
>UNIPROTKB|Q5A4P9 [details] [associations]
symbol:DBP9 "ATP-dependent RNA helicase DBP9"
species:237561 "Candida albicans SC5314" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0004220 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AL033391 EMBL:AACQ01000064 EMBL:AACQ01000065
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 RefSeq:XP_716643.1 RefSeq:XP_716703.1
ProteinModelPortal:Q5A4P9 STRING:Q5A4P9 GeneID:3641598
GeneID:3641657 KEGG:cal:CaO19.10896 KEGG:cal:CaO19.3393 KO:K14810
Uniprot:Q5A4P9
Length = 574
Score = 599 (215.9 bits), Expect = 4.5e-96, Sum P(4) = 4.5e-96
Identities = 132/322 (40%), Positives = 201/322 (62%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNK-DVLVRARTGSGKTGAFAIPMIQKIINLKQTAQ 88
LQAI +LG+ PTLIQ AIPL L+ K D++ +A TGSGKT A+ IP++ NL
Sbjct: 26 LQAIDQLGFSNPTLIQSSAIPLALEEKRDIIAKASTGSGKTAAYCIPIVN---NLLTDDS 82
Query: 89 VQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
Q K+++L P++EL NQ+ + +++L + + +++S V LLV +P+I++
Sbjct: 83 AQGIKSIILVPTRELSNQVFQFVEKLLTFSTNKINVLNLSSSYSDQVLNSLLVNKPEIII 142
Query: 149 ATPARALAHLKA--KTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLP--KLYQAIL 204
+TPA+ + L+ K +DL S+++ + IDE DLV SFGY DD+K + +LP K Q L
Sbjct: 143 STPAKLIQILEKNEKNIDL-STVKNLTIDEVDLVLSFGYLDDLKKLESYLPVKKNLQTFL 201
Query: 205 ASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNL 264
SAT+++D+ LK P ILKL E + A + L Y+ E +K + Y + KLNL
Sbjct: 202 MSATVNDDLDDLKQRYCTKPAILKLNEDS-ANQNNLVQYYAKTTEFDKFLLAYVIFKLNL 260
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
++GKTI FVN +D+ Y+LKL+LEQF I C+LNSELP +R H V +FN+ +Y ++IA+D
Sbjct: 261 IKGKTIAFVNNIDRGYRLKLFLEQFGIRCCILNSELPINSRLHIVEEFNKNVYHLLIATD 320
Query: 325 E-KALETPQINSTNNRKRKRDK 345
E L Q ++ + + +DK
Sbjct: 321 ETNELNEEQDDNEDGDEDTKDK 342
Score = 236 (88.1 bits), Expect = 4.5e-96, Sum P(4) = 4.5e-96
Identities = 59/136 (43%), Positives = 81/136 (59%)
Query: 324 DEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARG 383
D+ ET S + K K+DKE GVSRG+DF+ V+ V+NFD P + YIHR GRTAR
Sbjct: 341 DKGNAETKPKKSKKS-KFKQDKEYGVSRGVDFRNVACVLNFDLPTSSKAYIHRIGRTARA 399
Query: 384 KNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNL 443
G ALSFV L + TA S S ++ + V ++ ++ F IKPYQF++
Sbjct: 400 GKAGMALSFV-LPLSEFGKHKTA-SLASAKKDE---KVLGRIVKQQSKNGFEIKPYQFDM 454
Query: 444 DEVKGFEYRAKDAWRS 459
+V+GF YRA DA+R+
Sbjct: 455 KQVEGFRYRADDAFRA 470
Score = 122 (48.0 bits), Expect = 4.5e-96, Sum P(4) = 4.5e-96
Identities = 21/41 (51%), Positives = 31/41 (75%)
Query: 461 YFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPPALKK 501
+FE+NP DL +LRHDK L+ RIQS L +VP Y++P + ++
Sbjct: 497 FFEENPQDLASLRHDKELHPARIQSQLKNVPQYLLPESARQ 537
Score = 48 (22.0 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 36/150 (24%), Positives = 63/150 (42%)
Query: 277 DKCYKLKLYLEQFKISTCVLNSELP--AKARCHAVYQFNQ-GLYDVIIASDEKALETPQI 333
DK Y + ++ F+ CVLN +LP +KA H + + + G + ++ E +
Sbjct: 360 DKEYGVSRGVD-FRNVACVLNFDLPTSSKAYIHRIGRTARAGKAGMALSFVLPLSEFGKH 418
Query: 334 NSTNNRKRKRDKESGVSRGIDFQ----FVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA 389
+ + K+D E + R + Q F FD ++ + +RA R Q TA
Sbjct: 419 KTASLASAKKD-EKVLGRIVKQQSKNGFEIKPYQFDMK-QVEGFRYRADDAFRAVTQ-TA 475
Query: 390 LSFVSLRE--QDLMNDGTALSFVSLREQDL 417
+ ++E +L+N F QDL
Sbjct: 476 VREARVKELKNELINSEKLKRFFEENPQDL 505
Score = 46 (21.3 bits), Expect = 0.00019, Sum P(3) = 0.00019
Identities = 42/200 (21%), Positives = 81/200 (40%)
Query: 255 ILYTLLKLNLVQG-KTIIFVNTVDKCYKLKLYLEQF-KISTCVLNSELPAKARCHAVYQF 312
I+ LL + QG K+II V T + ++ ++E+ ST +N + Y
Sbjct: 73 IVNNLLTDDSAQGIKSIILVPTRELSNQVFQFVEKLLTFSTNKINV-----LNLSSSYS- 126
Query: 313 NQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQC 372
+Q L +++ E + TP K +++ + + + V V++F + D++
Sbjct: 127 DQVLNSLLVNKPEIIISTPAKLIQILEKNEKNIDLSTVKNLTIDEVDLVLSFGYLDDLK- 185
Query: 373 YIHRAGRTARGKNQGTALSFVSLREQ--DLMNDG-TALSFVSLREQDL-MNDVNEYLMTN 428
KN T L ++ + DL T + + L E N++ +Y
Sbjct: 186 --KLESYLPVKKNLQTFLMSATVNDDLDDLKQRYCTKPAILKLNEDSANQNNLVQYYAKT 243
Query: 429 LHEDDFIIKPYQFNLDEVKG 448
D F++ F L+ +KG
Sbjct: 244 TEFDKFLLAYVIFKLNLIKG 263
Score = 41 (19.5 bits), Expect = 4.5e-96, Sum P(4) = 4.5e-96
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 1 AIAKLGWLEPTLIQ 14
AI +LG+ PTLIQ
Sbjct: 28 AIDQLGFSNPTLIQ 41
>DICTYBASE|DDB_G0280407 [details] [associations]
symbol:ddx56 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IEA;ISS]
[GO:0000027 "ribosomal large subunit assembly" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0280407 GO:GO:0005524 GO:GO:0005730
GenomeReviews:CM000152_GR GO:GO:0003723 EMBL:AAFI02000036
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0000027 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14810 HSSP:P10081 RefSeq:XP_641158.1
STRING:Q54VF1 EnsemblProtists:DDB0234216 GeneID:8622538
KEGG:ddi:DDB_G0280407 OMA:CARETEM ProtClustDB:CLSZ2730700
Uniprot:Q54VF1
Length = 685
Score = 704 (252.9 bits), Expect = 4.9e-96, Sum P(3) = 4.9e-96
Identities = 137/325 (42%), Positives = 218/325 (67%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+ K+G+ P+L+Q ++IPL LQ KD+L +ARTGSGKT A++IP+IQK++ K+ + +
Sbjct: 35 LRALKKMGFQNPSLVQSKSIPLSLQGKDILAKARTGSGKTAAYSIPIIQKVLMAKEKSNI 94
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ KA+VL P++ELC Q+ + +++ C + V V + + Q+ LL + PD++V+
Sbjct: 95 KGVKAVVLVPTRELCEQVKNHFNQVSYYCQQLVSVVQLGNDKTLDEQKGLLRDIPDVIVS 154
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + HL+ KT+ L+S+L+I++IDEADLV ++G+++D+ + FLPK+ Q L SATL
Sbjct: 155 TPTRLVQHLENKTIQLQSTLDILVIDEADLVLNYGHQNDINIIKSFLPKVCQCFLMSATL 214
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+++V LK L+L P +LKLEE A + L+ Y I E +K ++++LL+L L+QGK
Sbjct: 215 TKEVEELKKLVLHTPAVLKLEEDK-AIQTNLSEYSIKCAEVDKFLLVFSLLRLRLMQGKI 273
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALE 329
+ FVN + CYKLKL+ E+F I VLNSELP +R + QFN+GL+D +IA+DE
Sbjct: 274 LFFVNDTNNCYKLKLFFERFHIKCAVLNSELPINSRHDIILQFNKGLFDYLIATDES--- 330
Query: 330 TPQINSTNNRKRKRDKESGVSRGID 354
S +N+K +++ E + D
Sbjct: 331 ---FKSDSNKKEEQELEDNENEDDD 352
Score = 247 (92.0 bits), Expect = 4.9e-96, Sum P(3) = 4.9e-96
Identities = 66/191 (34%), Positives = 101/191 (52%)
Query: 324 DEKALETPQINSTNNRK---RKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRT 380
DE+ E N+K K DKE GV+RGIDF+ V V+NFDFP I+ YIHR GRT
Sbjct: 399 DEEENEEDDDKKNKNKKINNSKGDKEYGVARGIDFRNVDIVVNFDFPRTIKNYIHRIGRT 458
Query: 381 ARGKNQGTALSFVSLREQDLMNDGTAL---SFVSLREQDL-MNDVNEYLMTNLHEDDFII 436
ARG N+G ALSFV+ ++L+ + + +L+ + MN + + +D ++
Sbjct: 459 ARGTNKGIALSFVTYHNEELLKKVSKTRGDAGYNLKPFEFKMNAIEGF---RYRVED-VL 514
Query: 437 KPYQFN-LDEVKGFEYRAK---DAWRSNYFEDNPTDLETLRHDKALYTVRIQSHLADVPD 492
+ + E K E + + + ++F +NP DL L+HD L ++ HL VP+
Sbjct: 515 RTIGIRAIKEAKKTELKQELLNNEKLKSHFSENPQDLLALKHDTTLIKKQVPLHLRVVPE 574
Query: 493 YIVPPALKKLA 503
Y++P K A
Sbjct: 575 YLLPTQFKNHA 585
Score = 37 (18.1 bits), Expect = 4.9e-96, Sum P(3) = 4.9e-96
Identities = 6/14 (42%), Positives = 11/14 (78%)
Query: 1 AIAKLGWLEPTLIQ 14
A+ K+G+ P+L+Q
Sbjct: 37 ALKKMGFQNPSLVQ 50
>RGD|1303195 [details] [associations]
symbol:Ddx56 "DEAD (Asp-Glu-Ala-Asp) box helicase 56"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=TAS] [GO:0004386 "helicase activity" evidence=TAS]
[GO:0005524 "ATP binding" evidence=TAS] [GO:0005634 "nucleus"
evidence=TAS] [GO:0005730 "nucleolus" evidence=ISO;TAS] [GO:0006364
"rRNA processing" evidence=TAS] [GO:0008026 "ATP-dependent helicase
activity" evidence=TAS] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1303195
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 KO:K14810 HOGENOM:HOG000253015 CTD:54606
HOVERGEN:HBG051334 OrthoDB:EOG47H5PT UniGene:Rn.39458 EMBL:BC078919
IPI:IPI00949738 RefSeq:NP_001004211.1 STRING:Q6AYT6
Ensembl:ENSRNOT00000065205 GeneID:289780 KEGG:rno:289780
UCSC:RGD:1303195 InParanoid:Q6AYT6 NextBio:630330
Genevestigator:Q6AYT6 Uniprot:Q6AYT6
Length = 482
Score = 929 (332.1 bits), Expect = 2.7e-93, P = 2.7e-93
Identities = 201/460 (43%), Positives = 289/460 (62%)
Query: 76 MIQKIINLKQTAQVQE--TKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDV 133
M+Q +++ K T V E + LVL P+KEL Q IQ+L C+RDV+ ++S D
Sbjct: 1 MLQLLLHKKATGPVMEQAVRGLVLVPTKELARQAQSMIQQLASYCARDVRVANVSAAEDS 60
Query: 134 SVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVL 193
+ Q +L+E+PD+VV TP+R L HL+ K L L+ SLE++++DEADL+FSFG+ED++K++L
Sbjct: 61 ASQRAVLMEKPDVVVGTPSRILNHLQQKNLKLRDSLELLVVDEADLLFSFGFEDELKSLL 120
Query: 194 KFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQ-EDEK 252
LP++YQA L SAT +EDV +LK L+L NPV LKL+E + QL + ++ + E++K
Sbjct: 121 CHLPRIYQAFLMSATFNEDVQTLKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDK 180
Query: 253 ATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQF 312
+LY LLKL+L++GK ++FVNT+++ Y+L+L+LEQF I +CVLN ELP ++RCH + QF
Sbjct: 181 FLLLYALLKLSLIRGKALLFVNTLERGYRLRLFLEQFSIPSCVLNGELPLRSRCHIISQF 240
Query: 313 NQGLYDVIIASDEKALETPQINSTNN-RKRKRDK----ESGVSRGIDFQFVSNVINFDFP 367
NQGLYD +IA+D + L PQ+ + R K DK ESGV+RGIDF VS V+NFD P
Sbjct: 241 NQGLYDCVIATDAEILG-PQVKAKRQGRGSKGDKASDPESGVARGIDFHHVSAVLNFDLP 299
Query: 368 LDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMT 427
+ Y+HRAGRTAR N G L+FV EQ + + ++L++ +
Sbjct: 300 PTAEAYVHRAGRTARANNPGIVLTFVLPTEQSSLG----------KIEELLSGEGQAP-- 347
Query: 428 NLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS-------------------------NYF 462
I+ PYQF ++E++ F YR +DA RS YF
Sbjct: 348 -------ILLPYQFQMEEIESFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYF 400
Query: 463 EDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPPALKKL 502
EDNP DL+ LRHD L+ ++ HL +VPDY+VP AL+ L
Sbjct: 401 EDNPRDLQLLRHDLPLHPAVVKPHLGNVPDYLVPAALRGL 440
>UNIPROTKB|H7C3E9 [details] [associations]
symbol:DDX56 "Probable ATP-dependent RNA helicase DDX56"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC004938 HGNC:HGNC:18193 ProteinModelPortal:H7C3E9
Ensembl:ENST00000433257 Uniprot:H7C3E9
Length = 396
Score = 907 (324.3 bits), Expect = 5.7e-91, P = 5.7e-91
Identities = 188/403 (46%), Positives = 267/403 (66%)
Query: 59 LVRARTGSGKTGAFAIPMIQKIINLKQTAQV--QETKALVLSPSKELCNQLHKNIQELTM 116
L RARTGSGKT A+AIPM+Q +++ K T V Q + LVL P+KEL Q IQ+L
Sbjct: 2 LARARTGSGKTAAYAIPMLQLLLHRKATGPVVEQAVRGLVLVPTKELARQAQSMIQQLAT 61
Query: 117 KCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDE 176
C+RDV+ ++S D Q +L+E+PD+VV TP+R L+HL+ +L L+ SLE++++DE
Sbjct: 62 YCARDVRVANVSAAEDSVSQRAVLMEKPDVVVGTPSRILSHLQQDSLKLRDSLELLVVDE 121
Query: 177 ADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAP 236
ADL+FSFG+E+++K++L LP++YQA L SAT +EDV +LK LIL NPV LKL+E +
Sbjct: 122 ADLLFSFGFEEELKSLLCHLPRIYQAFLMSATFNEDVQALKELILHNPVTLKLQESQLPG 181
Query: 237 VSQLAHYHILAQ-EDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCV 295
QL + ++ + E++K +LY LLKL+L++GK+++FVNT+++ Y+L+L+LEQF I TCV
Sbjct: 182 PDQLQQFQVVCETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPTCV 241
Query: 296 LNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDK----ESGVSR 351
LN ELP ++RCH + QFNQG YD +IA+D + L P R K DK E+GV+R
Sbjct: 242 LNGELPLRSRCHIISQFNQGFYDCVIATDAEVLGAPVKGKRRGRGPKGDKASDPEAGVAR 301
Query: 352 GIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVS 411
GIDF VS V+NFD P + YIHRAGRTAR N G L+FV EQ F
Sbjct: 302 GIDFHHVSAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQ----------FHL 351
Query: 412 LREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAK 454
+ ++L++ N I+ PYQF ++E++GF YR +
Sbjct: 352 GKIEELLSGENR---------GPILLPYQFRMEEIEGFRYRCR 385
>UNIPROTKB|J9NSI3 [details] [associations]
symbol:DDX56 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
PROSITE:PS51192 GO:GO:0008026 GeneTree:ENSGT00550000074946
Ensembl:ENSCAFT00000050014 OMA:YGYEDDL Uniprot:J9NSI3
Length = 445
Score = 866 (309.9 bits), Expect = 1.3e-86, P = 1.3e-86
Identities = 186/424 (43%), Positives = 263/424 (62%)
Query: 111 IQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLE 170
IQ+L C+RD++ D+S D + Q +L+E+PDIVV TP+R L HL+ +L L+ SLE
Sbjct: 2 IQQLASYCARDIRVADVSAAEDSASQRAVLMEKPDIVVGTPSRILNHLQQDSLVLRDSLE 61
Query: 171 IVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLE 230
++++DEADL+FSFG+E+++K +L LP++YQA L SAT +EDV +LK L+L NPV LKL+
Sbjct: 62 LLVLDEADLLFSFGFEEELKGLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQ 121
Query: 231 EPAIAPVSQLAHYHILAQ-EDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQF 289
E + QL + ++ + E++K +LY LLKL+L++GK ++FVNT+++ Y+L+L+LEQF
Sbjct: 122 ESQLPGPDQLRQFQVVCETEEDKFLLLYALLKLSLIRGKCLLFVNTLERSYRLRLFLEQF 181
Query: 290 KISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNR----KRKRDK 345
I CVLN ELP +RCH + QFNQG YD +IA+D + L + R R D
Sbjct: 182 SIPACVLNGELPLCSRCHIISQFNQGFYDCVIATDAEVLGSLVKGRRRGRGSRGTRASDP 241
Query: 346 ESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGT 405
E+GV+RGIDF VS+V+NFD P + YIHRAGRTAR N G L+FV EQ +
Sbjct: 242 EAGVARGIDFHHVSSVLNFDLPPTPEAYIHRAGRTARANNPGMVLTFVLPTEQSHL---- 297
Query: 406 ALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRS------ 459
D E L++ + ++ PYQF ++E++GF YR +DA RS
Sbjct: 298 --------------DTIEELLSGENRAPVLL-PYQFRMEEIEGFRYRCRDAMRSVTKQAI 342
Query: 460 -------------------NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIVPPALK 500
YFEDNP DL+ LRHD L+ ++ HL VPDY+VPPAL+
Sbjct: 343 REARLKEIKEELLHSERLKTYFEDNPRDLQLLRHDLPLHPAIVKPHLGHVPDYLVPPALR 402
Query: 501 KLAR 504
L R
Sbjct: 403 GLVR 406
>POMBASE|SPCC1494.06c [details] [associations]
symbol:SPCC1494.06c "ATP-dependent RNA helicase Dbp9
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPCC1494.06c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005730 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14810
HOGENOM:HOG000253015 OMA:TFLMSAT OrthoDB:EOG4DFSWQ PIR:T41007
RefSeq:NP_588531.1 ProteinModelPortal:O60080 SMR:O60080
STRING:O60080 EnsemblFungi:SPCC1494.06c.1 GeneID:2538776
KEGG:spo:SPCC1494.06c NextBio:20799959 Uniprot:O60080
Length = 595
Score = 660 (237.4 bits), Expect = 1.7e-86, Sum P(2) = 1.7e-86
Identities = 134/311 (43%), Positives = 212/311 (68%)
Query: 22 TFTLFCI-P-LQ-AIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQ 78
TF+ F + P LQ AI K + +PT +Q IPL L+ KD++ +ARTGSGKT A+ IP+++
Sbjct: 15 TFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILE 74
Query: 79 KIINLKQTAQVQE-TKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQE 137
++ KQ + Q AL+L P++EL Q++ +++LT CS+ ++ ++++ +VQ
Sbjct: 75 LLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQR 134
Query: 138 PLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLP 197
PLL++ PDIV+ATP+R + H+ + L L L+ ++IDEADL+ SFGY +DMK + + LP
Sbjct: 135 PLLLDLPDIVIATPSRCVVHVASGVLPL-DKLKFLVIDEADLMLSFGYNEDMKTLSRSLP 193
Query: 198 KLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILY 257
+ Q+ L SATLS+++ SL+ L+ RNP IL +++ + +L Y + E +K + Y
Sbjct: 194 RGTQSFLMSATLSKNIASLQKLVCRNPFILAVKDKEAS--GKLTQYVVKCSEQDKFLLAY 251
Query: 258 TLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLY 317
LLKL L++GK +IFVN +++CY+LKL+LEQF + + VLNSELP +R H + Q+N+GLY
Sbjct: 252 ILLKLRLIKGKILIFVNEINRCYRLKLFLEQFGLKSLVLNSELPVNSRLHILEQYNKGLY 311
Query: 318 DVIIASDEKAL 328
+IIA+DE +
Sbjct: 312 QIIIATDESGM 322
Score = 224 (83.9 bits), Expect = 1.7e-86, Sum P(2) = 1.7e-86
Identities = 55/174 (31%), Positives = 97/174 (55%)
Query: 323 SDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTAR 382
+DE L + S ++ K+DKE GV+RG+DF+ V+ V+NFD P + + YIHR GRTAR
Sbjct: 360 NDESILAAAKDKSKKKKRVKQDKEYGVARGLDFENVACVLNFDMPSNTKSYIHRIGRTAR 419
Query: 383 GKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFN 442
GTA+SFV + + + T+L S ++ +E ++ L + ++PY F+
Sbjct: 420 AGKPGTAMSFVVPKSEVGKHKPTSLE--SCKK-------DESVLRRLEKKQISLQPYSFD 470
Query: 443 LDEVKGFEYRAKDAWRS-NYFEDNPTDLETLRHDKALYTVRIQSHLADVPDYIV 495
+++ F YR +DA R+ + L+ + L + +++S+ A+ PD ++
Sbjct: 471 KNQIDAFRYRMEDALRAVTTVAVSAARAAELKQE-LLISEKLKSYFAENPDELL 523
Score = 83 (34.3 bits), Expect = 1.2e-71, Sum P(2) = 1.2e-71
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 460 NYFEDNPTDLETLRHDKALYTVRI---QSHLADVPDYIVPPALK 500
+YF +NP +L +L HD + +VR+ Q HL VP+Y++P ++
Sbjct: 513 SYFAENPDELLSLTHD-TVSSVRLGHTQRHLRHVPEYLLPKGMQ 555
>WB|WBGene00016073 [details] [associations]
symbol:C24H12.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0040007 GO:GO:0002119
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14810 HOGENOM:HOG000253015 OMA:TFLMSAT
GeneTree:ENSGT00550000074946 HSSP:P10081 EMBL:FO080318 PIR:T32328
RefSeq:NP_740966.1 ProteinModelPortal:O17157 SMR:O17157
STRING:O17157 PaxDb:O17157 PRIDE:O17157 EnsemblMetazoa:C24H12.4a
GeneID:173432 KEGG:cel:CELE_C24H12.4 UCSC:C24H12.4a CTD:173432
WormBase:C24H12.4a InParanoid:O17157 NextBio:879633
ArrayExpress:O17157 Uniprot:O17157
Length = 634
Score = 749 (268.7 bits), Expect = 3.1e-74, P = 3.1e-74
Identities = 175/447 (39%), Positives = 263/447 (58%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L++I +LGW + +QE I L L+NK+++ RARTGSGKTGAF IP++QK+I +T
Sbjct: 101 LKSIGELGWEKANQVQESVISLALENKNIMGRARTGSGKTGAFLIPLVQKLIAESKTNDG 160
Query: 90 QE-TKALVLSPSKELCNQLHKNIQELTMKCS--RDVKCVDISEQVDVSVQEPLLVERPDI 146
A++++P+KEL Q++K +L+ + + DI+E+ + SV L +R +
Sbjct: 161 SVGPSAVIIAPTKELITQIYKLFVKLSQALPFLQAINLCDINEEEN-SVW---LEDRSHV 216
Query: 147 VVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
VV TP + L + + + + +++DEADL+ SFGYE++M + LP YQ ++ S
Sbjct: 217 VVTTPGKLLRMCSLRP-EYCTLVSYLVMDEADLLLSFGYEEEMIKIRSKLPPTYQCLMTS 275
Query: 207 ATLSEDVLSLKHLILRNPVI-LKLEEPAIAPVSQLAHYHILAQEDEKA-TILYTLLKLNL 264
ATL +D+ +LK L + PVI +KL E + QL Y + DE+ IL + KL L
Sbjct: 276 ATLKDDMTTLKKLFMTGPVITIKLTEGDLPNSDQLTQYQLTCGSDEERFAILVAMFKLKL 335
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
+ G++I+FVNT+D+CYKL L L F + +C+LNS +PA +RCH + QFN+G Y ++IASD
Sbjct: 336 IVGRSILFVNTIDRCYKLMLILRVFGLKSCILNSAMPANSRCHVINQFNEGSYQIVIASD 395
Query: 325 E--------------KALETPQINSTNNRKR-KRDKESGVSRGIDFQFVSNVINFDFPLD 369
K+ E P+ + +K K DKESGVSRGIDF VSNV+NFDFP
Sbjct: 396 VSDADGSKLKEEIAGKSDEKPEKDEKKGKKASKLDKESGVSRGIDFHHVSNVVNFDFPET 455
Query: 370 IQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNL 429
YIHR GRTARG N+GTALSF E+ + EQ + ++N+ +
Sbjct: 456 TDAYIHRVGRTARGFNKGTALSFCIPSERAHL------------EQ-IQEEINQQMGRK- 501
Query: 430 HEDDFIIKPYQFNLDEVKGFEYRAKDA 456
+++PY+F + E+ F R ++A
Sbjct: 502 -----VLQPYEFRIKELDTFLLRTREA 523
Score = 214 (80.4 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 66/187 (35%), Positives = 93/187 (49%)
Query: 326 KALETPQINSTNNRKR-KRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGK 384
K+ E P+ + +K K DKESGVSRGIDF VSNV+NFDFP YIHR GRTARG
Sbjct: 411 KSDEKPEKDEKKGKKASKLDKESGVSRGIDFHHVSNVVNFDFPETTDAYIHRVGRTARGF 470
Query: 385 NQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLD 444
N+GTALSF E+ + + +Q + Y D F+++ +
Sbjct: 471 NKGTALSFCIPSERAHLEQIQE----EINQQMGRKVLQPYEFRIKELDTFLLRTREALSK 526
Query: 445 EVKGFEYRAK------DAWRS----NYFEDNPTDLETLRHDKALYTVRIQSH-LADVPDY 493
KG +A+ + RS +F N + ++ D ++I S +ADV Y
Sbjct: 527 CTKGVIKKARLKEIRQELMRSANLQTFFAKNEREKLLMQTDCHPVMLKINSPAIADVTSY 586
Query: 494 IVPPALK 500
+VP AL+
Sbjct: 587 MVPEALR 593
>TAIR|locus:2116920 [details] [associations]
symbol:AT4G34910 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0006606
"protein import into nucleus" evidence=RCA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003723 EMBL:AL161586
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AL079347
KO:K14810 HOGENOM:HOG000253015 OMA:TFLMSAT EMBL:BT002816
EMBL:BT004442 EMBL:AJ010467 IPI:IPI00520936 PIR:T10237 PIR:T51745
RefSeq:NP_195217.1 UniGene:At.24924 ProteinModelPortal:Q9SW44
SMR:Q9SW44 STRING:Q9SW44 PaxDb:Q9SW44 PRIDE:Q9SW44
EnsemblPlants:AT4G34910.1 GeneID:829643 KEGG:ath:AT4G34910
KEGG:dosa:Os03t0728800-01 GeneFarm:933 TAIR:At4g34910
InParanoid:Q9SW44 PhylomeDB:Q9SW44 ProtClustDB:CLSN2685920
Genevestigator:Q9SW44 GermOnline:AT4G34910 Uniprot:Q9SW44
Length = 626
Score = 716 (257.1 bits), Expect = 9.9e-71, P = 9.9e-71
Identities = 169/450 (37%), Positives = 256/450 (56%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++A+ K G +PTLIQ+ AIP IL+ KDV+ RA+TGSGKT A+ +P++QK+ + ++
Sbjct: 58 IRALTKKGIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKK 117
Query: 90 Q-ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
+ A +L PS+ELC Q++ + L C +K V ++ + S L P+I+V
Sbjct: 118 KLAPSAFILVPSRELCQQVYTEVSSLIELCRVQLKAVQLTSSMSASDMRNALAGLPEILV 177
Query: 149 ATPARALAHLKAKTLD---LKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILA 205
+TPA A L+ + SL I+++DEADL+ S+GYED++++V +P+ Q +L
Sbjct: 178 STPACIPKCFAAGVLEPTAVSESLSILVLDEADLLLSYGYEDNLRSVTSIIPRRCQCLLM 237
Query: 206 SATLSEDVLSLKHLILRNPVILKLEEP---AIAPVSQLAHYHILAQEDEKATILYTLLKL 262
SAT S DV LK LIL NP++L L E A S + + I +K + LLKL
Sbjct: 238 SATTSSDVEKLKKLILHNPIVLTLTEDNDKEEAVPSNVQQFWISCSAQDKLLHILALLKL 297
Query: 263 NLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIA 322
+VQ K +IF+NT+D ++LKL+LE+F I + +LN ELP +R H + QFN GL+D +IA
Sbjct: 298 EVVQKKILIFINTIDMGFRLKLFLEKFGIKSAILNGELPQNSRLHILEQFNAGLFDYLIA 357
Query: 323 SDEKAL----------ETPQINSTNNR--KRKRDKESGVSRGIDFQFVSNVINFDFPLDI 370
+D+ + E + N NN+ K K D E GV RGIDF+ V VINFD P +
Sbjct: 358 TDDNSQTKKQKEEAKGEANKENKKNNKRSKPKLDAEFGVVRGIDFKKVHTVINFDMPQSV 417
Query: 371 QCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLH 430
YIHR GRT R + G+++S +S E + F D+ +L ++ +
Sbjct: 418 TGYIHRIGRTGRAYSSGSSVSLISPDEME--------GF---------EDIKSFLASDKN 460
Query: 431 EDDFIIKPYQFNLDE-VKGFEYRAKDAWRS 459
+D II P+ + V+ YRA+D +S
Sbjct: 461 KDIDIITPFPLLTENAVESLRYRAEDVAKS 490
Score = 222 (83.2 bits), Expect = 4.9e-15, P = 4.9e-15
Identities = 65/195 (33%), Positives = 101/195 (51%)
Query: 324 DEKALETPQINSTNNR--KRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTA 381
+E E + N NN+ K K D E GV RGIDF+ V VINFD P + YIHR GRT
Sbjct: 369 EEAKGEANKENKKNNKRSKPKLDAEFGVVRGIDFKKVHTVINFDMPQSVTGYIHRIGRTG 428
Query: 382 RGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEY-LMT-NLHED-DFIIKP 438
R + G+++S +S E + D SF++ + ++ + + L+T N E + +
Sbjct: 429 RAYSSGSSVSLISPDEMEGFED--IKSFLASDKNKDIDIITPFPLLTENAVESLRYRAED 486
Query: 439 YQFNLDEVKGFEYRAKDAWRS--N------YFEDNPTDLETLRHDKALYTVRIQSHLADV 490
++ ++ E RA+D N +FE NP DL+ LRHDK L HL D+
Sbjct: 487 VAKSVTKIAVRESRAQDLRNEIINSEKLKAHFEANPRDLDLLRHDKPLSKTAPAPHLKDI 546
Query: 491 PDYIVPPALKKLARI 505
P+Y+V ++ +++
Sbjct: 547 PEYLVDAKTQEASKM 561
>ZFIN|ZDB-GENE-050522-359 [details] [associations]
symbol:zgc:112350 "zgc:112350" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050522-359 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG100512 KO:K14777
EMBL:BC095776 IPI:IPI00488135 RefSeq:NP_001018522.1
UniGene:Dr.84733 ProteinModelPortal:Q502B4 SMR:Q502B4 GeneID:553715
KEGG:dre:553715 NextBio:20880445 Uniprot:Q502B4
Length = 512
Score = 381 (139.2 bits), Expect = 1.7e-49, Sum P(3) = 1.7e-49
Identities = 95/311 (30%), Positives = 167/311 (53%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ 90
+A +LGW +PT IQ AIP+ LQ +DV+ A TGSGKTGAFA+P++Q ++ A Q
Sbjct: 92 EACDQLGWKKPTKIQIEAIPVALQGRDVIGLAETGSGKTGAFAVPVLQSLL-----ACAQ 146
Query: 91 ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVAT 150
LVL+P++EL Q+ + L S VK I +D+ Q +L ++P +V+AT
Sbjct: 147 RLHTLVLTPTRELAFQIAEQFDALGS--SIGVKTAVIVGGIDMMSQALVLAKKPHVVIAT 204
Query: 151 PARALAHLK-AKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
P R + H++ K +L++ L+ +++DEAD + + +E ++ +LK +P+ + L SAT+
Sbjct: 205 PGRLIDHMENTKGFNLRA-LKYLVMDEADRILNMDFESEVDKILKVIPRDRRTFLFSATM 263
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
++ V L+ L++PV + A V +L ++I K L ++L L
Sbjct: 264 TKKVQKLQRAALQDPVKCSVSSK-YATVDKLQQFYIFIPSKYKDCYLVSILN-ELAGNSF 321
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD--EKA 327
++F T + ++ L L I+ L+ ++ R A+ +F V++A+D +
Sbjct: 322 MVFCGTCNNTQRVALLLRNLGITAIPLHGQMSQNKRLGALNKFKSKSRSVLLATDVASRG 381
Query: 328 LETPQINSTNN 338
L+ P ++ N
Sbjct: 382 LDIPHVDCVIN 392
Score = 119 (46.9 bits), Expect = 1.7e-49, Sum P(3) = 1.7e-49
Identities = 26/58 (44%), Positives = 34/58 (58%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTAL 407
SRG+D V VINFD P + YIHR GRTAR G +++FV+ + +L AL
Sbjct: 379 SRGLDIPHVDCVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRIEAL 436
Score = 44 (20.5 bits), Expect = 1.7e-49, Sum P(3) = 1.7e-49
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 1 AIAKLGWLEPTLIQV 15
A +LGW +PT IQ+
Sbjct: 93 ACDQLGWKKPTKIQI 107
>UNIPROTKB|Q29S22 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=ISS] [GO:0006915 "apoptotic
process" evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 EMBL:BC113207
IPI:IPI00688068 RefSeq:NP_001039850.1 UniGene:Bt.23258
ProteinModelPortal:Q29S22 SMR:Q29S22 PRIDE:Q29S22
Ensembl:ENSBTAT00000003058 GeneID:534721 KEGG:bta:534721 CTD:51202
HOVERGEN:HBG100512 InParanoid:Q29S22 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4TXBRS NextBio:20876515 Uniprot:Q29S22
Length = 457
Score = 379 (138.5 bits), Expect = 1.7e-49, Sum P(3) = 1.7e-49
Identities = 96/311 (30%), Positives = 166/311 (53%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ 90
+A +LGW +PT IQ AIPL LQ +D++ A TGSGKTGAFA+P++ ++ +T Q
Sbjct: 39 EACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALL---ETPQ-- 93
Query: 91 ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVAT 150
ALVL+P++EL Q+ + + L S V+C I +D Q L ++P IV+AT
Sbjct: 94 RLFALVLTPTRELAFQISEQFEALGS--SIGVQCAVIVGGIDSMSQSLALAKKPHIVIAT 151
Query: 151 PARALAHLK-AKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
P R + HL+ K +L++ L+ +++DEAD + + +E ++ +LK +P+ + L SAT+
Sbjct: 152 PGRLIDHLENTKGFNLRA-LKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATM 210
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
++ V L+ L+NPV + V +L Y++ K T L +L L
Sbjct: 211 TKKVQKLQRAALKNPVKCAVSSK-YQTVEKLQQYYLFIPSKFKDTYLVYILN-ELAGNSF 268
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD--EKA 327
+IF +T + + L L + L+ ++ R ++ +F +++A+D +
Sbjct: 269 MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRG 328
Query: 328 LETPQINSTNN 338
L+ P ++ N
Sbjct: 329 LDIPHVDVVVN 339
Score = 120 (47.3 bits), Expect = 1.7e-49, Sum P(3) = 1.7e-49
Identities = 24/51 (47%), Positives = 32/51 (62%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDL 400
SRG+D V V+NFD P + YIHR GRTAR G A++FV+ + +L
Sbjct: 326 SRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVEL 376
Score = 45 (20.9 bits), Expect = 1.7e-49, Sum P(3) = 1.7e-49
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 1 AIAKLGWLEPTLIQV 15
A +LGW +PT IQ+
Sbjct: 40 ACDQLGWTKPTKIQI 54
>MGI|MGI:1915005 [details] [associations]
symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 47"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0006364 "rRNA processing" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008380 "RNA splicing" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915005
GO:GO:0005524 GO:GO:0006915 GO:GO:0005730 GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268802
GeneTree:ENSGT00670000098028 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF OrthoDB:EOG4TXBRS ChiTaRS:DDX47 EMBL:AK010310
EMBL:AK076982 IPI:IPI00187240 RefSeq:NP_080636.2 UniGene:Mm.166524
ProteinModelPortal:Q9CWX9 SMR:Q9CWX9 IntAct:Q9CWX9
PhosphoSite:Q9CWX9 PaxDb:Q9CWX9 PRIDE:Q9CWX9
Ensembl:ENSMUST00000032326 GeneID:67755 KEGG:mmu:67755
InParanoid:Q9CWX9 NextBio:325481 Bgee:Q9CWX9 CleanEx:MM_DDX47
Genevestigator:Q9CWX9 GermOnline:ENSMUSG00000030204 Uniprot:Q9CWX9
Length = 455
Score = 379 (138.5 bits), Expect = 1.7e-49, Sum P(3) = 1.7e-49
Identities = 96/311 (30%), Positives = 166/311 (53%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ 90
+A +LGW +PT IQ AIPL LQ +D++ A TGSGKTGAFA+P++ ++ +T Q
Sbjct: 37 EACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALL---ETPQ-- 91
Query: 91 ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVAT 150
ALVL+P++EL Q+ + + L S V+C I +D Q L ++P IV+AT
Sbjct: 92 RLFALVLTPTRELAFQISEQFEALGS--SIGVQCAVIVGGIDSMSQSLALAKKPHIVIAT 149
Query: 151 PARALAHLK-AKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
P R + HL+ K +L++ L+ +++DEAD + + +E ++ +LK +P+ + L SAT+
Sbjct: 150 PGRLIDHLENTKGFNLRA-LKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATM 208
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
++ V L+ L+NPV + V +L Y++ K T L +L L
Sbjct: 209 TKKVQKLQRAALKNPVKCAVSSK-YQTVEKLQQYYLFIPSKFKDTYLVYILN-ELAGNSF 266
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD--EKA 327
+IF +T + + L L + L+ ++ R ++ +F +++A+D +
Sbjct: 267 MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRG 326
Query: 328 LETPQINSTNN 338
L+ P ++ N
Sbjct: 327 LDIPHVDVVVN 337
Score = 120 (47.3 bits), Expect = 1.7e-49, Sum P(3) = 1.7e-49
Identities = 24/51 (47%), Positives = 32/51 (62%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDL 400
SRG+D V V+NFD P + YIHR GRTAR G A++FV+ + +L
Sbjct: 324 SRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVEL 374
Score = 45 (20.9 bits), Expect = 1.7e-49, Sum P(3) = 1.7e-49
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 1 AIAKLGWLEPTLIQV 15
A +LGW +PT IQ+
Sbjct: 38 ACDQLGWAKPTKIQI 52
>UNIPROTKB|G3V727 [details] [associations]
symbol:Ddx47 "Protein Ddx47" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:CH473964
GeneTree:ENSGT00670000098028 CTD:51202 KO:K14777 OMA:IFIPSKF
RefSeq:NP_001015005.2 UniGene:Rn.73790 Ensembl:ENSRNOT00000011096
GeneID:297685 KEGG:rno:297685 RGD:1310437 NextBio:642541
Uniprot:G3V727
Length = 455
Score = 379 (138.5 bits), Expect = 1.7e-49, Sum P(3) = 1.7e-49
Identities = 96/311 (30%), Positives = 166/311 (53%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ 90
+A +LGW +PT IQ AIPL LQ +D++ A TGSGKTGAFA+P++ ++ +T Q
Sbjct: 37 EACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALL---ETPQ-- 91
Query: 91 ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVAT 150
ALVL+P++EL Q+ + + L S V+C I +D Q L ++P IV+AT
Sbjct: 92 RLFALVLTPTRELAFQISEQFEALGS--SIGVQCAVIVGGIDSMSQSLALAKKPHIVIAT 149
Query: 151 PARALAHLK-AKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
P R + HL+ K +L++ L+ +++DEAD + + +E ++ +LK +P+ + L SAT+
Sbjct: 150 PGRLIDHLENTKGFNLRA-LKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATM 208
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
++ V L+ L+NPV + V +L Y++ K T L +L L
Sbjct: 209 TKKVQKLQRAALKNPVKCAVSSK-YQTVEKLQQYYLFIPSKFKDTYLVYILN-ELAGNSF 266
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD--EKA 327
+IF +T + + L L + L+ ++ R ++ +F +++A+D +
Sbjct: 267 MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRG 326
Query: 328 LETPQINSTNN 338
L+ P ++ N
Sbjct: 327 LDIPHVDVVVN 337
Score = 120 (47.3 bits), Expect = 1.7e-49, Sum P(3) = 1.7e-49
Identities = 24/51 (47%), Positives = 32/51 (62%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDL 400
SRG+D V V+NFD P + YIHR GRTAR G A++FV+ + +L
Sbjct: 324 SRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVEL 374
Score = 45 (20.9 bits), Expect = 1.7e-49, Sum P(3) = 1.7e-49
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 1 AIAKLGWLEPTLIQV 15
A +LGW +PT IQ+
Sbjct: 38 ACDQLGWAKPTKIQI 52
>UNIPROTKB|Q9H0S4 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006915 "apoptotic process" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=IMP] [GO:0006364 "rRNA
processing" evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003676 GO:GO:0003723
EMBL:CH471094 UniGene:Hs.719938 GermOnline:ENSG00000178878
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF EMBL:AF078843 EMBL:AL136666 EMBL:AK054574 EMBL:AK127712
EMBL:AC007215 EMBL:BC009379 EMBL:BC068009 IPI:IPI00023972
IPI:IPI00397372 RefSeq:NP_057439.2 RefSeq:NP_957518.1 PDB:3BER
PDBsum:3BER ProteinModelPortal:Q9H0S4 SMR:Q9H0S4 IntAct:Q9H0S4
MINT:MINT-3056694 STRING:Q9H0S4 PhosphoSite:Q9H0S4 DMDM:52782792
SWISS-2DPAGE:Q9H0S4 PaxDb:Q9H0S4 PRIDE:Q9H0S4 DNASU:51202
Ensembl:ENST00000352940 Ensembl:ENST00000358007 GeneID:51202
KEGG:hsa:51202 UCSC:uc001rav.3 GeneCards:GC12P012966
HGNC:HGNC:18682 HPA:HPA014855 neXtProt:NX_Q9H0S4
PharmGKB:PA134918403 InParanoid:Q9H0S4 PhylomeDB:Q9H0S4
ChiTaRS:DDX47 EvolutionaryTrace:Q9H0S4 GenomeRNAi:51202
NextBio:54238 ArrayExpress:Q9H0S4 Bgee:Q9H0S4 CleanEx:HS_DDX47
Genevestigator:Q9H0S4 Uniprot:Q9H0S4
Length = 455
Score = 370 (135.3 bits), Expect = 1.5e-48, Sum P(3) = 1.5e-48
Identities = 95/311 (30%), Positives = 165/311 (53%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ 90
+A +LGW +PT IQ AIPL LQ +D++ A TGSGKTGAFA+P++ ++ +T Q
Sbjct: 37 EACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALL---ETPQ-- 91
Query: 91 ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVAT 150
ALVL+P++EL Q+ + + L S V+ I +D Q L ++P I++AT
Sbjct: 92 RLFALVLTPTRELAFQISEQFEALGS--SIGVQSAVIVGGIDSMSQSLALAKKPHIIIAT 149
Query: 151 PARALAHLK-AKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
P R + HL+ K +L++ L+ +++DEAD + + +E ++ +LK +P+ + L SAT+
Sbjct: 150 PGRLIDHLENTKGFNLRA-LKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATM 208
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
++ V L+ L+NPV + V +L Y+I K T L +L L
Sbjct: 209 TKKVQKLQRAALKNPVKCAVSSK-YQTVEKLQQYYIFIPSKFKDTYLVYILN-ELAGNSF 266
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD--EKA 327
+IF +T + + L L + L+ ++ R ++ +F +++A+D +
Sbjct: 267 MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRG 326
Query: 328 LETPQINSTNN 338
L+ P ++ N
Sbjct: 327 LDIPHVDVVVN 337
Score = 120 (47.3 bits), Expect = 1.5e-48, Sum P(3) = 1.5e-48
Identities = 24/51 (47%), Positives = 32/51 (62%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDL 400
SRG+D V V+NFD P + YIHR GRTAR G A++FV+ + +L
Sbjct: 324 SRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVEL 374
Score = 45 (20.9 bits), Expect = 1.5e-48, Sum P(3) = 1.5e-48
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 1 AIAKLGWLEPTLIQV 15
A +LGW +PT IQ+
Sbjct: 38 ACDQLGWTKPTKIQI 52
>UNIPROTKB|E2RN03 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF EMBL:AAEX03015248 Ensembl:ENSCAFT00000020996
NextBio:20853120 Uniprot:E2RN03
Length = 482
Score = 369 (135.0 bits), Expect = 1.9e-48, Sum P(3) = 1.9e-48
Identities = 95/311 (30%), Positives = 165/311 (53%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ 90
+A +LGW +PT IQ AIPL LQ +D++ A TGSGKTGAFA+P++ ++ +T Q
Sbjct: 63 EACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALL---ETPQ-- 117
Query: 91 ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVAT 150
ALVL+P++EL Q+ + + L S V+ I +D Q L ++P IV+AT
Sbjct: 118 RLFALVLTPTRELAFQISEQFEALGS--SIGVQSAVIVGGIDSMSQSLALAKKPHIVIAT 175
Query: 151 PARALAHLK-AKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
P R + HL+ K +L++ L+ +++DEAD + + +E ++ +LK +P+ + L SAT+
Sbjct: 176 PGRLIDHLENTKGFNLRA-LKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATM 234
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
++ V L+ L+NPV + V +L Y++ K T L +L L
Sbjct: 235 TKKVQKLQRAALKNPVKCAVSSK-YQTVEKLQQYYLFIPSKFKDTYLVYILN-ELAGNSF 292
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD--EKA 327
+IF +T + + L L + L+ ++ R ++ +F +++A+D +
Sbjct: 293 MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRG 352
Query: 328 LETPQINSTNN 338
L+ P ++ N
Sbjct: 353 LDIPHVDVVVN 363
Score = 120 (47.3 bits), Expect = 1.9e-48, Sum P(3) = 1.9e-48
Identities = 24/51 (47%), Positives = 32/51 (62%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDL 400
SRG+D V V+NFD P + YIHR GRTAR G A++FV+ + +L
Sbjct: 350 SRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVEL 400
Score = 45 (20.9 bits), Expect = 1.9e-48, Sum P(3) = 1.9e-48
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 1 AIAKLGWLEPTLIQV 15
A +LGW +PT IQ+
Sbjct: 64 ACDQLGWTKPTKIQI 78
>UNIPROTKB|Q5ZLB0 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 CTD:51202
HOVERGEN:HBG100512 KO:K14777 OMA:IFIPSKF OrthoDB:EOG4TXBRS
EMBL:AADN02006011 EMBL:AADN02006010 EMBL:AJ719824 IPI:IPI00584081
RefSeq:NP_001007854.1 UniGene:Gga.13941 SMR:Q5ZLB0 STRING:Q5ZLB0
Ensembl:ENSGALT00000019245 GeneID:417959 KEGG:gga:417959
InParanoid:Q5ZLB0 NextBio:20821184 Uniprot:Q5ZLB0
Length = 453
Score = 364 (133.2 bits), Expect = 1.3e-47, Sum P(3) = 1.3e-47
Identities = 93/311 (29%), Positives = 163/311 (52%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ 90
+A +LGW PT IQ AIP+ LQ +D++ A TGSGKTGAFA+P++Q +++ Q
Sbjct: 38 EACDQLGWKVPTKIQVEAIPVALQGRDIIGLAETGSGKTGAFALPILQALLDAPQ----- 92
Query: 91 ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVAT 150
ALVL+P++EL Q+ + + L S V I +D Q L ++P I++AT
Sbjct: 93 RLFALVLTPTRELAFQISEQFEALGS--SIGVHSAVIVGGIDSMSQSLALAKKPHIIIAT 150
Query: 151 PARALAHLK-AKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
P R + HL+ K +L++ L+ +++DEAD + + +E ++ +LK +P+ + L SAT+
Sbjct: 151 PGRLVDHLENTKGFNLRA-LKFLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATM 209
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
++ V L+ L+NPV + V +L Y+I K + L +L L
Sbjct: 210 TKQVQKLQRAALKNPVKCAVSSK-YQTVEKLQQYYIFIPSKFKDSYLVYILN-ELAGNSF 267
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD--EKA 327
+IF +T + + L L + L+ ++ R ++ +F +++A+D +
Sbjct: 268 MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKARSILLATDVASRG 327
Query: 328 LETPQINSTNN 338
L+ P ++ N
Sbjct: 328 LDIPHVDVVIN 338
Score = 120 (47.3 bits), Expect = 1.3e-47, Sum P(3) = 1.3e-47
Identities = 28/74 (37%), Positives = 41/74 (55%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND-----G 404
SRG+D V VINFD P + YIHR GRTAR G +++FV+ + +L G
Sbjct: 325 SRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRIEHLIG 384
Query: 405 TALSFVSLREQDLM 418
L ++E+++M
Sbjct: 385 KKLPAFPMQEEEVM 398
Score = 42 (19.8 bits), Expect = 1.3e-47, Sum P(3) = 1.3e-47
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 1 AIAKLGWLEPTLIQV 15
A +LGW PT IQV
Sbjct: 39 ACDQLGWKVPTKIQV 53
>UNIPROTKB|I3L976 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF Ensembl:ENSSSCT00000025539 Uniprot:I3L976
Length = 456
Score = 379 (138.5 bits), Expect = 4.2e-47, Sum P(3) = 4.2e-47
Identities = 96/311 (30%), Positives = 166/311 (53%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ 90
+A +LGW +PT IQ AIPL LQ +D++ A TGSGKTGAFA+P++ ++ +T Q
Sbjct: 36 EACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALL---ETPQ-- 90
Query: 91 ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVAT 150
ALVL+P++EL Q+ + + L S V+C I +D Q L ++P IV+AT
Sbjct: 91 RLFALVLTPTRELAFQISEQFEALGS--SIGVQCAVIVGGIDSMSQSLALAKKPHIVIAT 148
Query: 151 PARALAHLK-AKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
P R + HL+ K +L++ L+ +++DEAD + + +E ++ +LK +P+ + L SAT+
Sbjct: 149 PGRLIDHLENTKGFNLRA-LKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATM 207
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
++ V L+ L+NPV + V +L Y++ K T L +L L
Sbjct: 208 TKKVQKLQRAALKNPVKCAVSSK-YQTVEKLQQYYLFIPSKFKDTYLVYILN-ELAGNSF 265
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD--EKA 327
+IF +T + + L L + L+ ++ R ++ +F +++A+D +
Sbjct: 266 MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRG 325
Query: 328 LETPQINSTNN 338
L+ P ++ N
Sbjct: 326 LDIPHVDVVVN 336
Score = 97 (39.2 bits), Expect = 4.2e-47, Sum P(3) = 4.2e-47
Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTAR 382
SRG+D V V+NFD P + YIHR GRTAR
Sbjct: 323 SRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTAR 355
Score = 45 (20.9 bits), Expect = 4.2e-47, Sum P(3) = 4.2e-47
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 1 AIAKLGWLEPTLIQV 15
A +LGW +PT IQ+
Sbjct: 37 ACDQLGWTKPTKIQI 51
>UNIPROTKB|Q8EBV7 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 373 (136.4 bits), Expect = 2.3e-46, Sum P(3) = 2.3e-46
Identities = 93/299 (31%), Positives = 161/299 (53%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
+ +A+LG+ +PT IQ AIP IL +DV+ A+TG+GKT AFA+P++Q ++ Q+
Sbjct: 13 VDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQLLMADNQSDHA 72
Query: 90 QET-KALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
+ +ALVL P++EL Q+ ++ + D++ V + Q+ + D+++
Sbjct: 73 AKAIRALVLVPTRELALQVQQSFVKYAK--GTDIRVGIAYGGVSIEAQQAVFNAGIDVLI 130
Query: 149 ATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
ATP R L HL+ L+L + L ++ DEAD + G+ D+++AVLK +P Q +L SAT
Sbjct: 131 ATPGRLLDHLRQGALNL-NQLNTLVFDEADRMLDMGFMDEIQAVLKQVPAQRQTLLFSAT 189
Query: 209 LSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGK 268
L + + S +LR+P +++ +P +Q+ D K + L++ Q +
Sbjct: 190 LDDSIFSFSKNLLRDPKRIEVAKPNTT-AAQIEQRVYAIDSDRKTEFVSHLVRSKNWQ-Q 247
Query: 269 TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
+IF T KL L + ++T + +L AR + +F QGL V++A+D A
Sbjct: 248 VLIFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQGLVQVLVATDVAA 306
Score = 100 (40.3 bits), Expect = 2.3e-46, Sum P(3) = 2.3e-46
Identities = 23/66 (34%), Positives = 35/66 (53%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSF 409
+RG+D + VINF+ P + YIHR GRT R + G A++ S + L+ + L
Sbjct: 306 ARGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLLEEVETLLD 365
Query: 410 VSLREQ 415
L +Q
Sbjct: 366 KRLPQQ 371
Score = 41 (19.5 bits), Expect = 2.3e-46, Sum P(3) = 2.3e-46
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 2 IAKLGWLEPTLIQV 15
+A+LG+ +PT IQV
Sbjct: 16 LAELGYQQPTPIQV 29
>TIGR_CMR|SO_3388 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 373 (136.4 bits), Expect = 2.3e-46, Sum P(3) = 2.3e-46
Identities = 93/299 (31%), Positives = 161/299 (53%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
+ +A+LG+ +PT IQ AIP IL +DV+ A+TG+GKT AFA+P++Q ++ Q+
Sbjct: 13 VDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQLLMADNQSDHA 72
Query: 90 QET-KALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
+ +ALVL P++EL Q+ ++ + D++ V + Q+ + D+++
Sbjct: 73 AKAIRALVLVPTRELALQVQQSFVKYAK--GTDIRVGIAYGGVSIEAQQAVFNAGIDVLI 130
Query: 149 ATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
ATP R L HL+ L+L + L ++ DEAD + G+ D+++AVLK +P Q +L SAT
Sbjct: 131 ATPGRLLDHLRQGALNL-NQLNTLVFDEADRMLDMGFMDEIQAVLKQVPAQRQTLLFSAT 189
Query: 209 LSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGK 268
L + + S +LR+P +++ +P +Q+ D K + L++ Q +
Sbjct: 190 LDDSIFSFSKNLLRDPKRIEVAKPNTT-AAQIEQRVYAIDSDRKTEFVSHLVRSKNWQ-Q 247
Query: 269 TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
+IF T KL L + ++T + +L AR + +F QGL V++A+D A
Sbjct: 248 VLIFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQGLVQVLVATDVAA 306
Score = 100 (40.3 bits), Expect = 2.3e-46, Sum P(3) = 2.3e-46
Identities = 23/66 (34%), Positives = 35/66 (53%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSF 409
+RG+D + VINF+ P + YIHR GRT R + G A++ S + L+ + L
Sbjct: 306 ARGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLLEEVETLLD 365
Query: 410 VSLREQ 415
L +Q
Sbjct: 366 KRLPQQ 371
Score = 41 (19.5 bits), Expect = 2.3e-46, Sum P(3) = 2.3e-46
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 2 IAKLGWLEPTLIQV 15
+A+LG+ +PT IQV
Sbjct: 16 LAELGYQQPTPIQV 29
>UNIPROTKB|Q83DM8 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8 GeneID:1208557
KEGG:cbu:CBU_0670 PATRIC:17930019 ProtClustDB:CLSK914228
BioCyc:CBUR227377:GJ7S-666-MONOMER Uniprot:Q83DM8
Length = 420
Score = 357 (130.7 bits), Expect = 6.5e-46, Sum P(3) = 6.5e-46
Identities = 91/302 (30%), Positives = 165/302 (54%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLK---QT 86
L+AI + G++EPT +Q +AIP+ILQ +DV+V A+TG+GKT F +P++Q++ + Q
Sbjct: 22 LRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQRLFVSRPPLQR 81
Query: 87 AQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDI 146
+ +AL+L+P++EL Q+ + ++ +K + V + Q L DI
Sbjct: 82 SAKPVIRALILTPTRELAVQVFECVRAYGKYLP--LKATVVHGGVSIKPQINHLRRGVDI 139
Query: 147 VVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
+VATP R L + L+L S +E ++DEAD + G+ D++ +LK LP+ Q +L S
Sbjct: 140 LVATPGRLLDLVNQGVLNL-SRVEFFVLDEADRMLDMGFLPDIRRILKLLPESRQNLLFS 198
Query: 207 ATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHY-HILAQEDEKATILYTLLKLNLV 265
AT S+++ L +L +P ++++ A +++ H H + ++ ++ + + + N
Sbjct: 199 ATFSKEIKELTDKLLHSPALIEVARRNTA-AARITHVVHPVDRQRKRELLSFMIGSKNWR 257
Query: 266 QGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE 325
Q ++F T +L LE +S+ ++ AR A+ QF QG V++A+D
Sbjct: 258 Q--VLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQGKIRVLVATDV 315
Query: 326 KA 327
A
Sbjct: 316 AA 317
Score = 119 (46.9 bits), Expect = 6.5e-46, Sum P(3) = 6.5e-46
Identities = 24/54 (44%), Positives = 33/54 (61%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND 403
+RG+D + +VINF+ P + Y+HR GRT R N G A+S VS E L+ D
Sbjct: 317 ARGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGVAISLVSGDEVRLLRD 370
Score = 57 (25.1 bits), Expect = 1.9e-39, Sum P(3) = 1.9e-39
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 402 NDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQ 440
NDG A+S VS E L+ D+ + L + + ++ +I Y+
Sbjct: 352 NDGVAISLVSGDEVRLLRDIEKLLQSKMPQE--VIPGYE 388
Score = 37 (18.1 bits), Expect = 6.5e-46, Sum P(3) = 6.5e-46
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 1 AIAKLGWLEPTLIQ 14
AI + G++EPT +Q
Sbjct: 24 AIREQGYVEPTPVQ 37
>TIGR_CMR|CBU_0670 [details] [associations]
symbol:CBU_0670 "ATP-dependent RNA helicase RhlE,
putative" species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:HLIKQHN RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8
GeneID:1208557 KEGG:cbu:CBU_0670 PATRIC:17930019
ProtClustDB:CLSK914228 BioCyc:CBUR227377:GJ7S-666-MONOMER
Uniprot:Q83DM8
Length = 420
Score = 357 (130.7 bits), Expect = 6.5e-46, Sum P(3) = 6.5e-46
Identities = 91/302 (30%), Positives = 165/302 (54%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLK---QT 86
L+AI + G++EPT +Q +AIP+ILQ +DV+V A+TG+GKT F +P++Q++ + Q
Sbjct: 22 LRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQRLFVSRPPLQR 81
Query: 87 AQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDI 146
+ +AL+L+P++EL Q+ + ++ +K + V + Q L DI
Sbjct: 82 SAKPVIRALILTPTRELAVQVFECVRAYGKYLP--LKATVVHGGVSIKPQINHLRRGVDI 139
Query: 147 VVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
+VATP R L + L+L S +E ++DEAD + G+ D++ +LK LP+ Q +L S
Sbjct: 140 LVATPGRLLDLVNQGVLNL-SRVEFFVLDEADRMLDMGFLPDIRRILKLLPESRQNLLFS 198
Query: 207 ATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHY-HILAQEDEKATILYTLLKLNLV 265
AT S+++ L +L +P ++++ A +++ H H + ++ ++ + + + N
Sbjct: 199 ATFSKEIKELTDKLLHSPALIEVARRNTA-AARITHVVHPVDRQRKRELLSFMIGSKNWR 257
Query: 266 QGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE 325
Q ++F T +L LE +S+ ++ AR A+ QF QG V++A+D
Sbjct: 258 Q--VLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQGKIRVLVATDV 315
Query: 326 KA 327
A
Sbjct: 316 AA 317
Score = 119 (46.9 bits), Expect = 6.5e-46, Sum P(3) = 6.5e-46
Identities = 24/54 (44%), Positives = 33/54 (61%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND 403
+RG+D + +VINF+ P + Y+HR GRT R N G A+S VS E L+ D
Sbjct: 317 ARGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGVAISLVSGDEVRLLRD 370
Score = 57 (25.1 bits), Expect = 1.9e-39, Sum P(3) = 1.9e-39
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 402 NDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQ 440
NDG A+S VS E L+ D+ + L + + ++ +I Y+
Sbjct: 352 NDGVAISLVSGDEVRLLRDIEKLLQSKMPQE--VIPGYE 388
Score = 37 (18.1 bits), Expect = 6.5e-46, Sum P(3) = 6.5e-46
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 1 AIAKLGWLEPTLIQ 14
AI + G++EPT +Q
Sbjct: 24 AIREQGYVEPTPVQ 37
>UNIPROTKB|F8WDT8 [details] [associations]
symbol:DDX56 "Probable ATP-dependent RNA helicase DDX56"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 EMBL:AC004938 HGNC:HGNC:18193 IPI:IPI00925990
ProteinModelPortal:F8WDT8 SMR:F8WDT8 Ensembl:ENST00000446987
ArrayExpress:F8WDT8 Bgee:F8WDT8 Uniprot:F8WDT8
Length = 185
Score = 448 (162.8 bits), Expect = 7.6e-46, Sum P(2) = 7.6e-46
Identities = 86/166 (51%), Positives = 122/166 (73%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQA+ LGW PTLIQE+AIPL L+ KD+L RARTGSGKT A+AIPM+Q +++ K T V
Sbjct: 19 LQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQLLLHRKATGPV 78
Query: 90 --QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
Q + LVL P+KEL Q IQ+L C+RDV+ ++S D Q +L+E+PD+V
Sbjct: 79 VEQAVRGLVLVPTKELARQAQSMIQQLATYCARDVRVANVSAAEDSVSQRAVLMEKPDVV 138
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVL 193
V TP+R L+HL+ +L L+ SLE++++DEADL+FSFG+E+++K++L
Sbjct: 139 VGTPSRILSHLQQDSLKLRDSLELLVVDEADLLFSFGFEEELKSLL 184
Score = 50 (22.7 bits), Expect = 7.6e-46, Sum P(2) = 7.6e-46
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 1 AIAKLGWLEPTLIQ 14
A+ LGW PTLIQ
Sbjct: 21 AVTDLGWSRPTLIQ 34
>TAIR|locus:2173517 [details] [associations]
symbol:AT5G60990 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009220
"pyrimidine ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0003723 EMBL:AB008269 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
EMBL:AK117799 EMBL:BT005375 EMBL:AY088068 EMBL:AJ010462
IPI:IPI00518446 PIR:T51342 RefSeq:NP_568931.1 UniGene:At.20430
ProteinModelPortal:Q8GY84 SMR:Q8GY84 STRING:Q8GY84 PaxDb:Q8GY84
PRIDE:Q8GY84 EnsemblPlants:AT5G60990.1 GeneID:836220
KEGG:ath:AT5G60990 GeneFarm:923 TAIR:At5g60990 InParanoid:Q8GY84
PhylomeDB:Q8GY84 ProtClustDB:CLSN2690059 Genevestigator:Q8GY84
GermOnline:AT5G60990 Uniprot:Q8GY84
Length = 456
Score = 355 (130.0 bits), Expect = 1.5e-45, Sum P(3) = 1.5e-45
Identities = 95/321 (29%), Positives = 169/321 (52%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++A +LGW P+ IQ A+P L+ KDV+ A+TGSGKTGAFAIP++Q ++ ++
Sbjct: 21 VKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQALLEYVYDSEP 80
Query: 90 QETK-------ALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVE 142
++ + A VLSP++EL Q+ + + L S ++C + +D Q L +
Sbjct: 81 KKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADIS--LRCAVLVGGIDRMQQTIALGK 138
Query: 143 RPDIVVATPARALAHLK-AKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQ 201
RP ++VATP R H+ K LKS L+ +++DEAD + + +E + +L+ +P +
Sbjct: 139 RPHVIVATPGRLWDHMSDTKGFSLKS-LKYLVLDEADRLLNEDFEKSLNQILEEIPLERK 197
Query: 202 AILASATLSEDVLSLKHLILRNPVILKLEEPA-IAPVSQLAH-YHILAQEDEKATILYTL 259
L SAT+++ V L+ LRNPV K+E + + V L Y +A + + ++Y L
Sbjct: 198 TFLFSATMTKKVRKLQRACLRNPV--KIEAASKYSTVDTLKQQYRFVAAKYKDCYLVYIL 255
Query: 260 LKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDV 319
++ + ++IF T D L L L ++ ++ R A+ +F G ++
Sbjct: 256 SEMP--ESTSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKFKAGECNI 313
Query: 320 IIASD--EKALETPQINSTNN 338
++ +D + L+ P ++ N
Sbjct: 314 LVCTDVASRGLDIPSVDVVIN 334
Score = 112 (44.5 bits), Expect = 1.5e-45, Sum P(3) = 1.5e-45
Identities = 23/48 (47%), Positives = 29/48 (60%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLRE 397
SRG+D V VIN+D P + + YIHR GRTAR G +S V+ E
Sbjct: 321 SRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQYE 368
Score = 43 (20.2 bits), Expect = 1.5e-45, Sum P(3) = 1.5e-45
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 1 AIAKLGWLEPTLIQVYFELPF 21
A +LGW P+ IQ LPF
Sbjct: 23 ACERLGWKNPSKIQAE-ALPF 42
>UNIPROTKB|Q5L3G9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:235909 "Geobacillus kaustophilus HTA426" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR HSSP:Q58083 EMBL:BA000043 RefSeq:YP_146079.1
ProteinModelPortal:Q5L3G9 GeneID:3184893 GenomeReviews:BA000043_GR
KEGG:gka:GK0226 PATRIC:21961545 ProtClustDB:CLSK712472
BioCyc:GKAU235909:GJO7-260-MONOMER Uniprot:Q5L3G9
Length = 467
Score = 371 (135.7 bits), Expect = 1.6e-45, Sum P(2) = 1.6e-45
Identities = 97/324 (29%), Positives = 178/324 (54%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++AI ++G+ E T IQ + IPL LQNKDV+ +A+TG+GKT AF IP+++K+ N+K +A V
Sbjct: 14 MKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIVEKV-NVKNSA-V 71
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
Q ALV++P++EL Q+ + + ++ + V+ + I D+ Q L + P ++V
Sbjct: 72 Q---ALVVAPTRELAIQVSEELYKIG--AVKRVRVLPIYGGQDIERQIRALKKHPHVIVG 126
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + H+ TL L+ + V++DEAD + + G+ +D++A+L +P Q +L SAT+
Sbjct: 127 TPGRIIDHINRGTLRLEH-VHTVVLDEADEMLNMGFIEDIEAILSHVPAERQTLLFSATM 185
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+ + + + P ++K++ + V + Y++ E +K IL LL + +
Sbjct: 186 PDPIRRIAERFMNEPELVKVKAKEMT-VPNIQQYYLEVHEKKKFDILTRLLDIQAPE-LA 243
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA-- 327
I+F T + +L L + ++ +L R + +F +G ++++A+D A
Sbjct: 244 IVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEILVATDVAARG 303
Query: 328 LETPQINSTNNRKRKRDKESGVSR 351
L+ + N +D ES V R
Sbjct: 304 LDISGVTHVYNFDIPQDPESYVHR 327
Score = 124 (48.7 bits), Expect = 1.6e-45, Sum P(2) = 1.6e-45
Identities = 23/48 (47%), Positives = 32/48 (66%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLRE 397
+RG+D V++V NFD P D + Y+HR GRT R G A++FV+ RE
Sbjct: 301 ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPRE 348
>UNIPROTKB|P25888 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0042255 "ribosome assembly" evidence=IGI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0005840 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0042255 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:L02123 HOGENOM:HOG000268807 EMBL:X56307
PIR:E64816 RefSeq:NP_415318.1 RefSeq:YP_489070.1
ProteinModelPortal:P25888 SMR:P25888 DIP:DIP-10697N IntAct:P25888
MINT:MINT-1313387 PRIDE:P25888 EnsemblBacteria:EBESCT00000003075
EnsemblBacteria:EBESCT00000017437 GeneID:12930968 GeneID:945425
KEGG:ecj:Y75_p0770 KEGG:eco:b0797 PATRIC:32116795 EchoBASE:EB1217
EcoGene:EG11235 KO:K11927 OMA:HLIKQHN ProtClustDB:PRK10590
BioCyc:EcoCyc:EG11235-MONOMER BioCyc:ECOL316407:JW0781-MONOMER
Genevestigator:P25888 Uniprot:P25888
Length = 454
Score = 360 (131.8 bits), Expect = 1.6e-45, Sum P(3) = 1.6e-45
Identities = 89/298 (29%), Positives = 164/298 (55%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+A+ G+ EPT IQ++AIP +L+ +D++ A+TG+GKT F +P++Q +I + A+
Sbjct: 13 LRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKG 72
Query: 90 QE-TKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
+ +AL+L+P++EL Q+ +N+++ + + ++ + + V ++ Q L D++V
Sbjct: 73 RRPVRALILTPTRELAAQIGENVRDYSKYLN--IRSLVVFGGVSINPQMMKLRGGVDVLV 130
Query: 149 ATPARAL--AHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
ATP R L H A LD +EI+++DEAD + G+ D++ VL LP Q +L S
Sbjct: 131 ATPGRLLDLEHQNAVKLD---QVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFS 187
Query: 207 ATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQ 266
AT S+D+ +L +L NP+ +++ A H H + ++ ++ + + + K N Q
Sbjct: 188 ATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQ 247
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
++F T L L + I + ++ AR A+ F G V++A+D
Sbjct: 248 --VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATD 303
Score = 109 (43.4 bits), Expect = 1.6e-45, Sum P(3) = 1.6e-45
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND 403
+RG+D + + +V+N++ P + Y+HR GRT R G ALS V + E L+ D
Sbjct: 306 ARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRD 359
Score = 42 (19.8 bits), Expect = 1.6e-38, Sum P(3) = 1.6e-38
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 404 GTALSFVSLREQDLMNDVNEYL 425
G ALS V + E L+ D+ + L
Sbjct: 343 GEALSLVCVDEHKLLRDIEKLL 364
Score = 39 (18.8 bits), Expect = 1.6e-45, Sum P(3) = 1.6e-45
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 1 AIAKLGWLEPTLIQ 14
A+A+ G+ EPT IQ
Sbjct: 15 AVAEQGYREPTPIQ 28
>TIGR_CMR|GSU_0522 [details] [associations]
symbol:GSU_0522 "ATP-dependent RNA helicase RhlB"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006401
"RNA catabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732
RefSeq:NP_951580.1 ProteinModelPortal:Q74FT4 GeneID:2685920
KEGG:gsu:GSU0522 PATRIC:22023799 OMA:LAYEFMN ProtClustDB:CLSK827899
BioCyc:GSUL243231:GH27-482-MONOMER Uniprot:Q74FT4
Length = 443
Score = 366 (133.9 bits), Expect = 6.7e-45, Sum P(2) = 6.7e-45
Identities = 102/328 (31%), Positives = 172/328 (52%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
+Q +A G+ + T IQE+ +PL L KDV +A+TG+GKT AF I + K++ + +
Sbjct: 13 MQGVADAGFSDCTPIQEKTLPLSLGGKDVAGQAQTGTGKTAAFLISLFTKLLRSGRGGER 72
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ +A++L+P++EL Q+ K+ Q L C ++ I VD Q+ L E D+VV
Sbjct: 73 RHPRAIILAPTRELVVQIEKDAQVLGAHCGFTIQA--IYGGVDYMKQKNALKEGADVVVG 130
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL--YQAILASA 207
TP R + +LK K LK +E+++IDEAD +F G+ D++ +L+ LP Q ++ SA
Sbjct: 131 TPGRLIDYLKQKVYSLKE-IEMLVIDEADRMFDMGFIADLRFILRRLPPYDKRQNLMFSA 189
Query: 208 TLSEDVLSLKHLILRNP--VILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLV 265
TL++ V+ L + + P V + E+ V Q+ YH+ EK +L LL+ +
Sbjct: 190 TLNQRVMELAYEFMNVPEKVAVTPEQMTAERVEQVL-YHV--GRKEKFPLLLGLLRKEGM 246
Query: 266 QGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD- 324
+ +T+IFVNT + L L V++ ++ + R + F G ++IA+D
Sbjct: 247 E-RTMIFVNTKREAEFLDERLNANDFPCRVISGDVEQRKRLKILEDFKSGKLPIMIATDV 305
Query: 325 -EKALETPQINSTNNRKRKRDKESGVSR 351
+ L ++ N +D E V R
Sbjct: 306 ASRGLHIDGVSHVINYDLPQDAEDYVHR 333
Score = 123 (48.4 bits), Expect = 6.7e-45, Sum P(2) = 6.7e-45
Identities = 36/109 (33%), Positives = 51/109 (46%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSF 409
SRG+ VS+VIN+D P D + Y+HR GRTAR +G A+S DG A
Sbjct: 307 SRGLHIDGVSHVINYDLPQDAEDYVHRIGRTARAGAEGKAISMAD-------EDG-AFHL 358
Query: 410 VSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWR 458
++ E + + + EDD + ++ KG E RAK R
Sbjct: 359 EAIHEY-----IKDKIPVEWAEDDLFVHDFKRVKPRPKGQETRAKGPTR 402
>UNIPROTKB|Q48AV0 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 359 (131.4 bits), Expect = 1.0e-44, Sum P(2) = 1.0e-44
Identities = 96/308 (31%), Positives = 169/308 (54%)
Query: 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII 81
+F+L L+AI + + EPT IQ+++IPLIL DV+ RA+TG+GKT AFA+P++Q++I
Sbjct: 9 SFSLDSTLLKAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPILQQLI 68
Query: 82 NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLV 141
+++ E +ALVL+P++EL Q+HK+ DV V Q L
Sbjct: 69 SVQPCKP--ELRALVLTPTRELAQQVHKSFCHYGQ--FTDVTIGIAYGGVSTKKQISELK 124
Query: 142 ERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQ 201
DI++ATP R L L+ +++ L S++E ++ DEAD + G+++++ + ++LPK Q
Sbjct: 125 VGVDILIATPGRLLDLLRTESVSL-SNIETLVFDEADRMLDMGFKEEIDQITQYLPKTKQ 183
Query: 202 AILASATLSEDVLSLKHLILRNPVILKLEEP--AIAPVSQLAHYHILAQEDEKATILYTL 259
+L SAT ++D+ + IL P +++++E A V QL Y + A + T + +
Sbjct: 184 TLLFSATFADDIYKMSKNILVEPKMVEIDEKNKAADDVEQLV-YGVDADRKRELTS-FLI 241
Query: 260 LKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDV 319
N Q ++F T L + + + + ++ + AR A+++F +G
Sbjct: 242 GSRNWKQ--VLVFTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEFKEGKVRA 299
Query: 320 IIASDEKA 327
+IA+D A
Sbjct: 300 LIATDVAA 307
Score = 130 (50.8 bits), Expect = 1.0e-44, Sum P(2) = 1.0e-44
Identities = 28/66 (42%), Positives = 42/66 (63%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSF 409
+RGID + +S+VIN++ P + + Y+HR GRTAR N G A+S VS E+ L+ L
Sbjct: 307 ARGIDIKGLSHVINYELPYNAEDYVHRIGRTARAGNSGLAVSLVSPGEEWLLTAIEELLD 366
Query: 410 VSLREQ 415
+ L +Q
Sbjct: 367 IQLLQQ 372
Score = 42 (19.8 bits), Expect = 1.8e-35, Sum P(2) = 1.8e-35
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 402 NDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEV 446
N G A+S VS E+ L+ + E L L + + Y+ +L ++
Sbjct: 342 NSGLAVSLVSPGEEWLLTAIEELLDIQLLQQ--WLPGYELDLTKI 384
>TIGR_CMR|CPS_0042 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 359 (131.4 bits), Expect = 1.0e-44, Sum P(2) = 1.0e-44
Identities = 96/308 (31%), Positives = 169/308 (54%)
Query: 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII 81
+F+L L+AI + + EPT IQ+++IPLIL DV+ RA+TG+GKT AFA+P++Q++I
Sbjct: 9 SFSLDSTLLKAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPILQQLI 68
Query: 82 NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLV 141
+++ E +ALVL+P++EL Q+HK+ DV V Q L
Sbjct: 69 SVQPCKP--ELRALVLTPTRELAQQVHKSFCHYGQ--FTDVTIGIAYGGVSTKKQISELK 124
Query: 142 ERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQ 201
DI++ATP R L L+ +++ L S++E ++ DEAD + G+++++ + ++LPK Q
Sbjct: 125 VGVDILIATPGRLLDLLRTESVSL-SNIETLVFDEADRMLDMGFKEEIDQITQYLPKTKQ 183
Query: 202 AILASATLSEDVLSLKHLILRNPVILKLEEP--AIAPVSQLAHYHILAQEDEKATILYTL 259
+L SAT ++D+ + IL P +++++E A V QL Y + A + T + +
Sbjct: 184 TLLFSATFADDIYKMSKNILVEPKMVEIDEKNKAADDVEQLV-YGVDADRKRELTS-FLI 241
Query: 260 LKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDV 319
N Q ++F T L + + + + ++ + AR A+++F +G
Sbjct: 242 GSRNWKQ--VLVFTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEFKEGKVRA 299
Query: 320 IIASDEKA 327
+IA+D A
Sbjct: 300 LIATDVAA 307
Score = 130 (50.8 bits), Expect = 1.0e-44, Sum P(2) = 1.0e-44
Identities = 28/66 (42%), Positives = 42/66 (63%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSF 409
+RGID + +S+VIN++ P + + Y+HR GRTAR N G A+S VS E+ L+ L
Sbjct: 307 ARGIDIKGLSHVINYELPYNAEDYVHRIGRTARAGNSGLAVSLVSPGEEWLLTAIEELLD 366
Query: 410 VSLREQ 415
+ L +Q
Sbjct: 367 IQLLQQ 372
Score = 42 (19.8 bits), Expect = 1.8e-35, Sum P(2) = 1.8e-35
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 402 NDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEV 446
N G A+S VS E+ L+ + E L L + + Y+ +L ++
Sbjct: 342 NSGLAVSLVSPGEEWLLTAIEELLDIQLLQQ--WLPGYELDLTKI 384
>TIGR_CMR|GSU_0914 [details] [associations]
symbol:GSU_0914 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE017180
GenomeReviews:AE017180_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 OMA:KHRAKRV RefSeq:NP_951968.1
ProteinModelPortal:Q74EP8 GeneID:2687174 KEGG:gsu:GSU0914
PATRIC:22024603 ProtClustDB:CLSK924451
BioCyc:GSUL243231:GH27-925-MONOMER Uniprot:Q74EP8
Length = 447
Score = 374 (136.7 bits), Expect = 1.8e-44, Sum P(2) = 1.8e-44
Identities = 96/308 (31%), Positives = 166/308 (53%)
Query: 33 IAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQET 92
IA G+ PT IQ +AIP ++ +DV+ A+TG+GKT AFA+P++ ++ Q +
Sbjct: 16 IAAAGYETPTPIQAQAIPAVMAGRDVMGLAQTGTGKTAAFALPILHRL----QQGERGRV 71
Query: 93 KALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPA 152
+ALV++P++EL Q++ + +T+ ++ V + V V+ Q L ++VVA P
Sbjct: 72 RALVIAPTRELAEQINDSF--VTLGRQTRLRSVTVYGGVGVNPQVQKLKAGAEVVVACPG 129
Query: 153 RALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSED 212
R L H+ T+DL S LE++++DEAD +F G+ D++ VLK LP Q +L SAT+ D
Sbjct: 130 RLLDHIAQGTIDL-SRLEVLVLDEADQMFDMGFLPDIRRVLKHLPPRRQTLLFSATMPID 188
Query: 213 VLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTIIF 272
+ +L IL +PV +++ +AP +AH ++ K +L LL+ + +IF
Sbjct: 189 IRTLAQDILVDPVTVQVG--TVAPAVTVAHALYPVEQHLKTPLLLELLRHTDTES-VLIF 245
Query: 273 VNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD--EKALET 330
T + +L LE+ L L R A+ F G + +++A+D + ++
Sbjct: 246 TRTKHRAKRLGEQLEKAGYRAASLQGNLSQNRRQAALDGFRDGTFQILVATDIAARGIDV 305
Query: 331 PQINSTNN 338
Q++ N
Sbjct: 306 SQVSHVIN 313
Score = 111 (44.1 bits), Expect = 1.8e-44, Sum P(2) = 1.8e-44
Identities = 22/45 (48%), Positives = 28/45 (62%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVS 394
+RGID VS+VIN+D P + YIHR GRT R G A + V+
Sbjct: 300 ARGIDVSQVSHVINYDIPDTAEAYIHRIGRTGRAARSGDAFTLVT 344
>POMBASE|SPAC31A2.07c [details] [associations]
symbol:dbp10 "ATP-dependent RNA helicase Dbp10
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPAC31A2.07c
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 InterPro:IPR014014
PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455 OrthoDB:EOG4JWZP1
EMBL:AB027882 PIR:S59645 RefSeq:NP_592919.1
ProteinModelPortal:Q09719 STRING:Q09719 EnsemblFungi:SPAC31A2.07c.1
GeneID:2543197 KEGG:spo:SPAC31A2.07c OMA:FYIPYRP NextBio:20804220
Uniprot:Q09719
Length = 848
Score = 470 (170.5 bits), Expect = 7.3e-44, P = 7.3e-44
Identities = 145/390 (37%), Positives = 210/390 (53%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AI K G+ PT IQ + IPL+L+ +DV+ ARTGSGKT AF IPMI+ +LK T
Sbjct: 81 LRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIE---HLKSTLAN 137
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T+AL+LSP++EL Q K +++ + D++ V I V + Q LL +PDIVVA
Sbjct: 138 SNTRALILSPNRELALQTVKVVKDFSK--GTDLRSVAIVGGVSLEEQFSLLSGKPDIVVA 195
Query: 150 TPARALAHLKAKT-LDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
TP R L HLK + L+L SS+E V+ DEAD +F G+ + +L LP Q +L SAT
Sbjct: 196 TPGRFL-HLKVEMKLEL-SSIEYVVFDEADRLFEMGFAAQLTEILHALPTSRQTLLFSAT 253
Query: 209 LSEDVLSLKHLILRNPVILKLE-EPAIAPVSQLAHYHILAQEDEKAT--ILYTLLKLNL- 264
L ++ L++PV+++L+ E ++ Q A + + E E A IL ++KL L
Sbjct: 254 LPRTLVDFAKAGLQDPVLVRLDVESKVSADLQSAFFSVKTAEREAALLCILQDIIKLPLK 313
Query: 265 --VQGKTIIFVNTVDKCYK-LKLYLEQFKI----STCVLNSELPAKARCHAVYQFN-QGL 316
V+ + I VN K + L+L L+ + ST V +P K V + Q
Sbjct: 314 DNVRPREIGNVNNPKKRKRALELALKGSESGSPDSTLVF---VPTKHHVEYVSELLVQAG 370
Query: 317 YDV--IIASDEKALETPQINSTNNRKRKRDKESGV-SRGIDFQFVSNVINFDFPLDIQCY 373
Y V I S ++ +IN+ K + V SRGID ++NVIN+DFP + +
Sbjct: 371 YSVSKIYGSLDQEARLNEINNFRLGKTNLLVVTDVASRGIDIPLLANVINYDFPPQPKVF 430
Query: 374 IHRAGRTARGKNQGTALSFVSLREQDLMND 403
+HR GRTAR G A S V + + D
Sbjct: 431 VHRVGRTARAGRTGWAYSLVRAEDAGYLLD 460
>UNIPROTKB|P96614 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0003723 "RNA binding" evidence=IDA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IDA] [GO:0009409
"response to cold" evidence=IGI] [GO:0010501 "RNA secondary
structure unwinding" evidence=IDA] [GO:0043590 "bacterial nucleoid"
evidence=IDA] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0009409
GO:GO:0003723 EMBL:AL009126 GenomeReviews:AL009126_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 HSSP:Q58083 ProtClustDB:CLSK886742
EMBL:AB001488 PIR:D69772 RefSeq:NP_388339.1
ProteinModelPortal:P96614 SMR:P96614 IntAct:P96614 DNASU:938170
EnsemblBacteria:EBBACT00000000739 GeneID:938170 KEGG:bsu:BSU04580
PATRIC:18972500 GenoList:BSU04580 BioCyc:BSUB:BSU04580-MONOMER
GO:GO:0010501 Uniprot:P96614
Length = 494
Score = 359 (131.4 bits), Expect = 3.0e-43, Sum P(2) = 3.0e-43
Identities = 98/331 (29%), Positives = 180/331 (54%)
Query: 23 FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIIN 82
F L ++AI ++G+ E T IQ + IPL L NKDV+ +A+TG+GKT AF IP+++KI N
Sbjct: 8 FNLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLVEKI-N 66
Query: 83 LKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVE 142
++ +Q A+V++P++EL Q+ + + ++ + K + I D+ Q L +
Sbjct: 67 -PESPNIQ---AIVIAPTRELAIQVSEELYKIGQ--DKRAKVLPIYGGQDIGRQIRALKK 120
Query: 143 RPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQA 202
P+I+V TP R L H+ +T+ L +++ V++DEAD + + G+ DD++++L +P +Q
Sbjct: 121 NPNIIVGTPGRLLDHINRRTIRL-NNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQT 179
Query: 203 ILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKL 262
+L SAT+ + + + P +K++ + VS + +++ QE +K L LL +
Sbjct: 180 LLFSATMPAPIKRIAERFMTEPEHVKVKAKEMT-VSNIQQFYLEVQERKKFDTLTRLLDI 238
Query: 263 NLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIA 322
+ I+F T + +L L + ++ +L R A+ +F +G +V++A
Sbjct: 239 QSPE-LAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVA 297
Query: 323 SDEKA--LETPQINSTNNRKRKRDKESGVSR 351
+D A L+ + N +D ES V R
Sbjct: 298 TDVAARGLDISGVTHVYNFDVPQDPESYVHR 328
Score = 132 (51.5 bits), Expect = 3.0e-43, Sum P(2) = 3.0e-43
Identities = 26/71 (36%), Positives = 43/71 (60%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSF 409
+RG+D V++V NFD P D + Y+HR GRT R G A++F++ RE+ ++ A+
Sbjct: 302 ARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLR---AIEQ 358
Query: 410 VSLREQDLMND 420
+ R+ D M +
Sbjct: 359 TTKRKMDRMKE 369
Score = 42 (19.8 bits), Expect = 8.3e-34, Sum P(2) = 8.3e-34
Identities = 15/63 (23%), Positives = 33/63 (52%)
Query: 404 GTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDE-VKGFEYRAKDAWRSNYF 462
G A++F++ RE+ ++ + + T + D + +P LDE ++G + + R+
Sbjct: 339 GMAMTFITPREKSMLRAIEQ---TTKRKMDRMKEP---TLDEALEGQQQVTVERLRTTIS 392
Query: 463 EDN 465
E+N
Sbjct: 393 ENN 395
>CGD|CAL0000864 [details] [associations]
symbol:DRS1 species:5476 "Candida albicans" [GO:0035690
"cellular response to drug" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864 GO:GO:0005524
GO:GO:0005730 GO:GO:0042254 GO:GO:0003723 GO:GO:0035690
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_719395.1 ProteinModelPortal:Q5ACK7
STRING:Q5ACK7 GeneID:3639045 KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 382 (139.5 bits), Expect = 3.6e-43, Sum P(2) = 3.6e-43
Identities = 98/316 (31%), Positives = 170/316 (53%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ IA+L + +PT IQ +IP+ L KD++ A+TGSGKTGA+ IP+I++++ T+
Sbjct: 142 LKGIAELKFTKPTPIQSASIPIALLGKDIVAGAQTGSGKTGAYMIPIIERLLYKPSTS-- 199
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQV---DVSVQEPLLVERPDI 146
TK ++L+P++EL Q++ E K S V ++I V ++ QE L RPDI
Sbjct: 200 --TKVIILTPTRELALQVY----EFGKKLSHHVNNLNIGLAVGGLNLRQQEEQLKTRPDI 253
Query: 147 VVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPK-LYQAILA 205
V+ATP R + H++ +++++IDEAD + G++D++ +L +PK Q +L
Sbjct: 254 VIATPGRLIDHIRNSPSFSVQDIQVLVIDEADRMLEEGFQDELTEILSLIPKHKRQTLLF 313
Query: 206 SATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDE-KATILYTLLKLNL 264
SAT++ + L L L+ PV + ++ P L + + + D+ K +LY LLK
Sbjct: 314 SATMNTRIQDLIQLSLQKPVRIMIDPPKSVASKLLQQFVRIRKRDQLKPALLYQLLKG-- 371
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
V + ++FV + ++L++ L + L+ L + R V F V+I +D
Sbjct: 372 VSSRVVVFVARKETAHRLRIVLGLLGLKVSELHGALTQEQRLQNVKNFKSLEVPVLICTD 431
Query: 325 --EKALETPQINSTNN 338
+ L+ P+I N
Sbjct: 432 LAARGLDIPKIELVIN 447
Score = 118 (46.6 bits), Expect = 3.6e-43, Sum P(2) = 3.6e-43
Identities = 33/131 (25%), Positives = 66/131 (50%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSF 409
+RG+D + VIN+D P + Y+HR GRTAR GT+++FV Q+ +A+
Sbjct: 434 ARGLDIPKIELVINYDMPKTFEIYLHRVGRTARAGRDGTSITFVGESSQERAIVKSAI-- 491
Query: 410 VSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRSNYFEDNPTDL 469
+ + + V+ E + +++ + +DEV E AK+ R+ ++L
Sbjct: 492 --VNGKGVAKTVD---WKQAEETNKLLESKESVIDEVLEEEKEAKELLRAEMELTKASNL 546
Query: 470 ETLRHDKALYT 480
++H++ +++
Sbjct: 547 --IKHEQEIHS 555
>UNIPROTKB|Q5ACK7 [details] [associations]
symbol:DRS1 "ATP-dependent RNA helicase DRS1"
species:237561 "Candida albicans SC5314" [GO:0035690 "cellular
response to drug" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864
GO:GO:0005524 GO:GO:0005730 GO:GO:0042254 GO:GO:0003723
GO:GO:0035690 EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K13181 RefSeq:XP_719395.1
ProteinModelPortal:Q5ACK7 STRING:Q5ACK7 GeneID:3639045
KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 382 (139.5 bits), Expect = 3.6e-43, Sum P(2) = 3.6e-43
Identities = 98/316 (31%), Positives = 170/316 (53%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ IA+L + +PT IQ +IP+ L KD++ A+TGSGKTGA+ IP+I++++ T+
Sbjct: 142 LKGIAELKFTKPTPIQSASIPIALLGKDIVAGAQTGSGKTGAYMIPIIERLLYKPSTS-- 199
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQV---DVSVQEPLLVERPDI 146
TK ++L+P++EL Q++ E K S V ++I V ++ QE L RPDI
Sbjct: 200 --TKVIILTPTRELALQVY----EFGKKLSHHVNNLNIGLAVGGLNLRQQEEQLKTRPDI 253
Query: 147 VVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPK-LYQAILA 205
V+ATP R + H++ +++++IDEAD + G++D++ +L +PK Q +L
Sbjct: 254 VIATPGRLIDHIRNSPSFSVQDIQVLVIDEADRMLEEGFQDELTEILSLIPKHKRQTLLF 313
Query: 206 SATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDE-KATILYTLLKLNL 264
SAT++ + L L L+ PV + ++ P L + + + D+ K +LY LLK
Sbjct: 314 SATMNTRIQDLIQLSLQKPVRIMIDPPKSVASKLLQQFVRIRKRDQLKPALLYQLLKG-- 371
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
V + ++FV + ++L++ L + L+ L + R V F V+I +D
Sbjct: 372 VSSRVVVFVARKETAHRLRIVLGLLGLKVSELHGALTQEQRLQNVKNFKSLEVPVLICTD 431
Query: 325 --EKALETPQINSTNN 338
+ L+ P+I N
Sbjct: 432 LAARGLDIPKIELVIN 447
Score = 118 (46.6 bits), Expect = 3.6e-43, Sum P(2) = 3.6e-43
Identities = 33/131 (25%), Positives = 66/131 (50%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSF 409
+RG+D + VIN+D P + Y+HR GRTAR GT+++FV Q+ +A+
Sbjct: 434 ARGLDIPKIELVINYDMPKTFEIYLHRVGRTARAGRDGTSITFVGESSQERAIVKSAI-- 491
Query: 410 VSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRSNYFEDNPTDL 469
+ + + V+ E + +++ + +DEV E AK+ R+ ++L
Sbjct: 492 --VNGKGVAKTVD---WKQAEETNKLLESKESVIDEVLEEEKEAKELLRAEMELTKASNL 546
Query: 470 ETLRHDKALYT 480
++H++ +++
Sbjct: 547 --IKHEQEIHS 555
>TIGR_CMR|SO_1383 [details] [associations]
symbol:SO_1383 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_717003.1
ProteinModelPortal:Q8EH47 GeneID:1169204 KEGG:son:SO_1383
PATRIC:23522420 OMA:SEVVHGE ProtClustDB:CLSK906234 Uniprot:Q8EH47
Length = 433
Score = 352 (129.0 bits), Expect = 7.2e-43, Sum P(2) = 7.2e-43
Identities = 104/320 (32%), Positives = 174/320 (54%)
Query: 26 FCIP-LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII-NL 83
FC L+AI+ G+ + T IQ++AIP I + +DVL A+TG+GKT AFA+P++QK++ N
Sbjct: 8 FCPEILRAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQKMVENP 67
Query: 84 KQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVER 143
+T + T+ L+L+P++EL Q+ +N++ + + V + I V V Q L
Sbjct: 68 SETLK-SNTRVLILTPTRELAAQVAENVEAYSKYLNFSV--LTIYGGVKVETQAQKLKRG 124
Query: 144 PDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAI 203
DI+VATP R L HL A L L SS++ +++DEAD + G+ D++ +L+ + K Q +
Sbjct: 125 ADIIVATPGRLLEHLTACNLSL-SSVDFLVLDEADRMLDMGFSADIQKILQAVNKKRQNL 183
Query: 204 LASATLSEDVLSLKHLILRNPVILKLEEPAIAP--VSQLAHYHILAQEDEKATILYTLL- 260
L SAT S V L + ++ P ++ ++ VSQ+ Y + ++ K +L L+
Sbjct: 184 LFSATFSSAVKKLANEMMIKPQVISADKQNTTADTVSQVV-YPV--EQRRKRELLSELIG 240
Query: 261 KLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVI 320
K N Q ++F T D L L I + V++ E +R A+ +F G V+
Sbjct: 241 KKNWQQ--VLVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFVSGKVRVL 298
Query: 321 IASDEKA--LETPQINSTNN 338
+A++ A L+ P + N
Sbjct: 299 VATEVAARGLDIPSLEYVVN 318
Score = 121 (47.7 bits), Expect = 7.2e-43, Sum P(2) = 7.2e-43
Identities = 23/54 (42%), Positives = 32/54 (59%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND 403
+RG+D + V+NFD P + Y+HR GRT R G A+SFVS E+ + D
Sbjct: 305 ARGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEERTLAD 358
Score = 44 (20.5 bits), Expect = 8.7e-35, Sum P(2) = 8.7e-35
Identities = 18/90 (20%), Positives = 40/90 (44%)
Query: 404 GTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEV--KGFEYRAKDAWRSNY 461
G A+SFVS E+ + D+ + + + + Y+ ++ K + R A +
Sbjct: 342 GVAISFVSREEERTLADIEKLIGQKIRR--ITVPGYEVGSRDLLLKQLQTRRSFA-KKQQ 398
Query: 462 FEDNPTDLETLRHDKALYTVRIQSHLADVP 491
+DN + E + +K++ R++ + P
Sbjct: 399 RQDNVS--EQMIAEKSMQGRRVKMKVGQAP 426
>TIGR_CMR|CPS_1418 [details] [associations]
symbol:CPS_1418 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:YP_268161.1 ProteinModelPortal:Q485V4
GeneID:3523021 KEGG:cps:CPS_1418 PATRIC:21466051
BioCyc:CPSY167879:GI48-1499-MONOMER Uniprot:Q485V4
Length = 401
Score = 334 (122.6 bits), Expect = 1.0e-42, Sum P(3) = 1.0e-42
Identities = 87/299 (29%), Positives = 160/299 (53%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIIN-LKQTAQ 88
L AIA LG+ +PT IQ++AIP++L KD++ A+TG+GKT +F +P+++++ + K+T +
Sbjct: 13 LNAIADLGYTKPTAIQQKAIPVVLAGKDIIAAAQTGTGKTASFVLPLLEQLNSQYKETGK 72
Query: 89 ---VQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPD 145
+ +AL+L P++EL Q+ +I + D+ + + VD Q+ L+ D
Sbjct: 73 KLRAKRIRALILVPTRELAVQVEASISQYAKYL--DISSMAMYGGVDAQEQKQRLIWGVD 130
Query: 146 IVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILA 205
I+VATP R L + L L+++++DEAD + G+ DD+ +++ LP+ Q +L
Sbjct: 131 ILVATPGRLLDMTHQRVLHF-DELDMLVLDEADRMLDMGFIDDINKIIERLPEHRQNLLF 189
Query: 206 SATLSEDVLSLKHLILRNPVILKL-EEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNL 264
SAT+SE+V L + PV + + + A P ++ + + + K+ +L ++
Sbjct: 190 SATMSEEVRGLAKRTIHKPVEISIGADKASKP--KIEQWLVTVDKANKSALLSHIITTQN 247
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIAS 323
Q + +IF+ T KL LE+ I ++S R + F G ++A+
Sbjct: 248 WQ-QALIFIETKHGAAKLVSQLEKRGIVAESIHSGRAQDIREKILNDFKSGKIKFLVAT 305
Score = 112 (44.5 bits), Expect = 1.0e-42, Sum P(3) = 1.0e-42
Identities = 22/45 (48%), Positives = 28/45 (62%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVS 394
+RG+D +S VIN+D P + YIHR GRT R G A+S VS
Sbjct: 309 ARGLDIGELSRVINYDLPAQVDDYIHRIGRTGRAGASGEAISLVS 353
Score = 43 (20.2 bits), Expect = 1.0e-42, Sum P(3) = 1.0e-42
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 1 AIAKLGWLEPTLIQ 14
AIA LG+ +PT IQ
Sbjct: 15 AIADLGYTKPTAIQ 28
>SGD|S000003931 [details] [associations]
symbol:DRS1 "Nucleolar DEAD-box protein required for ribosome
assembly and function" species:4932 "Saccharomyces cerevisiae"
[GO:0000027 "ribosomal large subunit assembly" evidence=TAS]
[GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0030687 "preribosome, large
subunit precursor" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=TAS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000003931 GO:GO:0005524 GO:GO:0005730
EMBL:BK006945 GO:GO:0003723 GO:GO:0030687 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 EMBL:X91488
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
KO:K13181 OrthoDB:EOG4B01XM EMBL:L00683 EMBL:Z73113 PIR:S64750
RefSeq:NP_013093.1 ProteinModelPortal:P32892 SMR:P32892
DIP:DIP-6471N IntAct:P32892 MINT:MINT-648259 STRING:P32892
PaxDb:P32892 PeptideAtlas:P32892 EnsemblFungi:YLL008W GeneID:850652
KEGG:sce:YLL008W CYGD:YLL008w OMA:RIRKRDH NextBio:966605
Genevestigator:P32892 GermOnline:YLL008W Uniprot:P32892
Length = 752
Score = 382 (139.5 bits), Expect = 1.7e-42, Sum P(2) = 1.7e-42
Identities = 96/317 (30%), Positives = 174/317 (54%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ +A LG+++P+ IQ IP+ L KD++ A TGSGKT AF IP+I+++ L + A++
Sbjct: 243 LKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERL--LYKPAKI 300
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQV---DVSVQEPLLVERPDI 146
T+ +VL P++EL Q + ++ + +R V + V ++ QE +L RPDI
Sbjct: 301 ASTRVIVLLPTRELAIQ----VADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSRPDI 356
Query: 147 VVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
V+ATP R + H++ S+EI+++DEAD + G++D++ ++ LP Q +L S
Sbjct: 357 VIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNRQNLLFS 416
Query: 207 ATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDE-KATILYTLL-KLNL 264
AT++ + SL L L+ PV + ++ P A + + + D K +L+ L+ KL+
Sbjct: 417 ATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRKRDHLKPALLFNLIRKLDP 476
Query: 265 V-QGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIAS 323
Q + ++FV + ++L++ + +S L+ L + R +V +F V+I +
Sbjct: 477 TGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEVPVLICT 536
Query: 324 D--EKALETPQINSTNN 338
D + L+ P+I N
Sbjct: 537 DLASRGLDIPKIEVVIN 553
Score = 119 (46.9 bits), Expect = 1.7e-42, Sum P(2) = 1.7e-42
Identities = 22/50 (44%), Positives = 31/50 (62%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQD 399
SRG+D + VIN+D P + Y+HR GRTAR +G +++FV QD
Sbjct: 540 SRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQD 589
Score = 39 (18.8 bits), Expect = 4.2e-34, Sum P(2) = 4.2e-34
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 336 TNNRKRKRDKESGVSRG 352
TN++KRKR++ G
Sbjct: 699 TNSKKRKREEAKADGNG 715
>GENEDB_PFALCIPARUM|PFB0860c [details] [associations]
symbol:PFB0860c "RNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 EMBL:AE001362
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268802 HSSP:P10081
KO:K14777 PIR:C71604 RefSeq:XP_001349688.1
ProteinModelPortal:O96264 EnsemblProtists:PFB0860c:mRNA
GeneID:812770 KEGG:pfa:PFB0860c EuPathDB:PlasmoDB:PF3D7_0218400
OMA:KHRAKRV ProtClustDB:CLSZ2432676 Uniprot:O96264
Length = 562
Score = 366 (133.9 bits), Expect = 2.9e-42, Sum P(3) = 2.9e-42
Identities = 97/295 (32%), Positives = 155/295 (52%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L++I +LGW +PT IQ +P KD++ + TGSGKT F IP++Q +LK
Sbjct: 168 LESIKELGWKKPTEIQREILPHAFLKKDIIGLSETGSGKTACFIIPILQ---DLK--VNK 222
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
Q ALV+SP++ELC Q+ +N Q L M ++ C I VD+ Q L ++P+++V+
Sbjct: 223 QSFYALVISPTRELCIQISQNFQALGMNLLINI-CT-IYGGVDIVTQSLNLAKKPNVIVS 280
Query: 150 TPARALAHLK-AKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
TP R L HL K +LK+ L+ ++ DEAD + S +E + +L LP L SAT
Sbjct: 281 TPGRILDHLNNTKGFNLKN-LKYLVFDEADKLLSQDFESSINKLLLILPPNRITFLFSAT 339
Query: 209 LSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGK 268
++++V LK L+NPV +++ + VS L +I K T L +L +
Sbjct: 340 MTKNVAKLKKACLKNPVKVEVSNK-YSTVSTLIETYIFLPLKYKYTYLSSLC-FHYQTRN 397
Query: 269 TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIAS 323
IIF NT KL + + + L+ +L R ++ F Y+++I++
Sbjct: 398 IIIFTNTCATAQKLNFFCRNLGLKSICLHGKLTQNQRLSSLNSFKVNKYNILIST 452
Score = 114 (45.2 bits), Expect = 2.9e-42, Sum P(3) = 2.9e-42
Identities = 43/159 (27%), Positives = 82/159 (51%)
Query: 313 NQGLYDVIIASDEKALETPQINSTNNRKRKR-----DKESGVSRGIDFQFVSNVINFDFP 367
N GL + + K + +++S N+ K + + G +RG+D Q + VINFD
Sbjct: 417 NLGLKSICLHG--KLTQNQRLSSLNSFKVNKYNILISTQVG-ARGLDLQDIKIVINFDI- 472
Query: 368 LDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMT 427
+ YIHR GRTAR G +++FV+ + D+ N F+++ +Q L ++++ T
Sbjct: 473 CSCKEYIHRVGRTARAGRSGKSITFVT--QYDVEN------FLAIEKQ-LNKKIDKF--T 521
Query: 428 NLHEDDFIIKPYQFNLDEVKGFEYRAKD---AWRSNYFE 463
+L E+D ++ Q ++ ++ E K+ ++ N F+
Sbjct: 522 DLDENDVLLYHEQ-TIEALRLSEIEMKENQELYKKNKFK 559
Score = 45 (20.9 bits), Expect = 2.9e-42, Sum P(3) = 2.9e-42
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 1 AIAKLGWLEPTLIQVYFELPFTF 23
+I +LGW +PT IQ LP F
Sbjct: 170 SIKELGWKKPTEIQREI-LPHAF 191
>UNIPROTKB|O96264 [details] [associations]
symbol:PFB0860c "DEAD/DEAH box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
EMBL:AE001362 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 HSSP:P10081 KO:K14777 PIR:C71604
RefSeq:XP_001349688.1 ProteinModelPortal:O96264
EnsemblProtists:PFB0860c:mRNA GeneID:812770 KEGG:pfa:PFB0860c
EuPathDB:PlasmoDB:PF3D7_0218400 OMA:KHRAKRV ProtClustDB:CLSZ2432676
Uniprot:O96264
Length = 562
Score = 366 (133.9 bits), Expect = 2.9e-42, Sum P(3) = 2.9e-42
Identities = 97/295 (32%), Positives = 155/295 (52%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L++I +LGW +PT IQ +P KD++ + TGSGKT F IP++Q +LK
Sbjct: 168 LESIKELGWKKPTEIQREILPHAFLKKDIIGLSETGSGKTACFIIPILQ---DLK--VNK 222
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
Q ALV+SP++ELC Q+ +N Q L M ++ C I VD+ Q L ++P+++V+
Sbjct: 223 QSFYALVISPTRELCIQISQNFQALGMNLLINI-CT-IYGGVDIVTQSLNLAKKPNVIVS 280
Query: 150 TPARALAHLK-AKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
TP R L HL K +LK+ L+ ++ DEAD + S +E + +L LP L SAT
Sbjct: 281 TPGRILDHLNNTKGFNLKN-LKYLVFDEADKLLSQDFESSINKLLLILPPNRITFLFSAT 339
Query: 209 LSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGK 268
++++V LK L+NPV +++ + VS L +I K T L +L +
Sbjct: 340 MTKNVAKLKKACLKNPVKVEVSNK-YSTVSTLIETYIFLPLKYKYTYLSSLC-FHYQTRN 397
Query: 269 TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIAS 323
IIF NT KL + + + L+ +L R ++ F Y+++I++
Sbjct: 398 IIIFTNTCATAQKLNFFCRNLGLKSICLHGKLTQNQRLSSLNSFKVNKYNILIST 452
Score = 114 (45.2 bits), Expect = 2.9e-42, Sum P(3) = 2.9e-42
Identities = 43/159 (27%), Positives = 82/159 (51%)
Query: 313 NQGLYDVIIASDEKALETPQINSTNNRKRKR-----DKESGVSRGIDFQFVSNVINFDFP 367
N GL + + K + +++S N+ K + + G +RG+D Q + VINFD
Sbjct: 417 NLGLKSICLHG--KLTQNQRLSSLNSFKVNKYNILISTQVG-ARGLDLQDIKIVINFDI- 472
Query: 368 LDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMT 427
+ YIHR GRTAR G +++FV+ + D+ N F+++ +Q L ++++ T
Sbjct: 473 CSCKEYIHRVGRTARAGRSGKSITFVT--QYDVEN------FLAIEKQ-LNKKIDKF--T 521
Query: 428 NLHEDDFIIKPYQFNLDEVKGFEYRAKD---AWRSNYFE 463
+L E+D ++ Q ++ ++ E K+ ++ N F+
Sbjct: 522 DLDENDVLLYHEQ-TIEALRLSEIEMKENQELYKKNKFK 559
Score = 45 (20.9 bits), Expect = 2.9e-42, Sum P(3) = 2.9e-42
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 1 AIAKLGWLEPTLIQVYFELPFTF 23
+I +LGW +PT IQ LP F
Sbjct: 170 SIKELGWKKPTEIQREI-LPHAF 191
>UNIPROTKB|Q65N62 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:279010 "Bacillus licheniformis DSM 13 = ATCC 14580"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0043590 "bacterial nucleoid" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 OMA:IIDHINR HSSP:Q58083 EMBL:AE017333
EMBL:CP000002 RefSeq:YP_006711973.1 RefSeq:YP_077785.1
ProteinModelPortal:Q65N62 STRING:Q65N62 DNASU:3098967
EnsemblBacteria:EBBACT00000055567 EnsemblBacteria:EBBACT00000059427
GeneID:3030407 GeneID:3098967 GenomeReviews:AE017333_GR
GenomeReviews:CP000002_GR KEGG:bld:BLi00546 KEGG:bli:BL02197
PATRIC:18946609 ProtClustDB:CLSK886742
BioCyc:BLIC279010:GJ2P-538-MONOMER Uniprot:Q65N62
Length = 487
Score = 351 (128.6 bits), Expect = 3.1e-42, Sum P(2) = 3.1e-42
Identities = 95/323 (29%), Positives = 176/323 (54%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ 90
+AI ++G+ E T IQ + IPL L NKDV+ +A+TG+GKT AF IP+++KI N ++ +Q
Sbjct: 16 KAIKRMGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIPLVEKI-N-PESPNIQ 73
Query: 91 ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVAT 150
A+V++P++EL Q+ + + ++ + + + I D+ Q L + P I+V T
Sbjct: 74 ---AIVIAPTRELAIQVSEELYKIGQ--DKRARVLPIYGGQDIGRQIRALKKNPHIIVGT 128
Query: 151 PARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLS 210
P R L H+ +T+ L++ + V++DEAD + + G+ +D++++L +P +Q +L SAT+
Sbjct: 129 PGRLLDHINRRTMRLQT-VNTVVLDEADEMLNMGFIEDIESILSNVPAEHQTLLFSATMP 187
Query: 211 EDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTI 270
+ + + NP +K++ + VS + +++ E +K L LL + + I
Sbjct: 188 APIKRIAERFMTNPEHVKVKAKEMT-VSNIQQFYLEVHERKKFDTLTRLLDIQSPE-LAI 245
Query: 271 IFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA--L 328
+F T + +L L + ++ +L R A+ +F QG +V++A+D A L
Sbjct: 246 VFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGAIEVLVATDVAARGL 305
Query: 329 ETPQINSTNNRKRKRDKESGVSR 351
+ + N +D ES V R
Sbjct: 306 DISGVTHVYNFDVPQDPESYVHR 328
Score = 136 (52.9 bits), Expect = 3.1e-42, Sum P(2) = 3.1e-42
Identities = 27/69 (39%), Positives = 43/69 (62%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSF 409
+RG+D V++V NFD P D + Y+HR GRT R G A++F++ RE+D++ A+
Sbjct: 302 ARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKDMLR---AIEQ 358
Query: 410 VSLREQDLM 418
+ R+ D M
Sbjct: 359 TTKRKMDRM 367
Score = 47 (21.6 bits), Expect = 6.7e-33, Sum P(2) = 6.7e-33
Identities = 17/63 (26%), Positives = 33/63 (52%)
Query: 404 GTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDE-VKGFEYRAKDAWRSNYF 462
G A++F++ RE+D++ + + T + D + P LDE ++G + D R+
Sbjct: 339 GMAMTFITPREKDMLRAIEQ---TTKRKMDRMKAP---TLDEAIEGQQQVTVDRIRTIIE 392
Query: 463 EDN 465
E+N
Sbjct: 393 ENN 395
>TAIR|locus:2130918 [details] [associations]
symbol:AT4G16630 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003723 EMBL:Z97341 EMBL:AL161544 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000265456 KO:K13181
OMA:RIRKRDH EMBL:AJ010475 EMBL:AK228353 IPI:IPI00542014 PIR:D71433
PIR:T51310 RefSeq:NP_193396.3 UniGene:At.49
ProteinModelPortal:Q9ZRZ8 SMR:Q9ZRZ8 IntAct:Q9ZRZ8 STRING:Q9ZRZ8
PaxDb:Q9ZRZ8 PRIDE:Q9ZRZ8 EnsemblPlants:AT4G16630.1 GeneID:827364
KEGG:ath:AT4G16630 GeneFarm:955 TAIR:At4g16630 InParanoid:Q9ZRZ8
PhylomeDB:Q9ZRZ8 ProtClustDB:CLSN2690957 Genevestigator:Q9ZRZ8
GermOnline:AT4G16630 Uniprot:Q9ZRZ8
Length = 789
Score = 383 (139.9 bits), Expect = 3.8e-42, Sum P(2) = 3.8e-42
Identities = 108/327 (33%), Positives = 169/327 (51%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A LG+ +PT IQ IPL L +D+ A TGSGKT AFA+P ++++ L + +V
Sbjct: 179 LRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLERL--LFRPKRV 236
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T+ L+L+P++EL Q+H IQ L D+KC I + V QE +L PDIVVA
Sbjct: 237 FATRVLILTPTRELAVQIHSMIQNLAQ--FTDIKCGLIVGGLSVREQEVVLRSMPDIVVA 294
Query: 150 TPARALAHLK-AKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
TP R + HL+ + ++DL L ++I+DEAD + G+ ++ +++ PK Q +L SAT
Sbjct: 295 TPGRMIDHLRNSMSVDL-DDLAVLILDEADRLLQTGFATEITELVRLCPKRRQTMLFSAT 353
Query: 209 LSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKL--NLVQ 266
++E+V L L L P+ L + A P L + + +A LL L +
Sbjct: 354 MTEEVKELVKLSLNKPLRLSADPSARRPPG-LTEEVVRIRRTREANQEAVLLSLCTRTFK 412
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
K IIF T ++LK+ + L+ L R ++ F + D +IA+D
Sbjct: 413 SKVIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRKQEVDFLIATDVA 472
Query: 327 A--LETPQINSTNNRKRKRDKESGVSR 351
A L+ + + N R+ +S V R
Sbjct: 473 ARGLDIIGVQTVINYACPREIDSYVHR 499
Score = 114 (45.2 bits), Expect = 3.8e-42, Sum P(2) = 3.8e-42
Identities = 22/52 (42%), Positives = 34/52 (65%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLM 401
+RG+D V VIN+ P +I Y+HR GRTAR +G A++FV+ ++ L+
Sbjct: 473 ARGLDIIGVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFVTDSDRSLL 524
>UNIPROTKB|Q8EI96 [details] [associations]
symbol:srmB "ATP-dependent RNA helicase SrmB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
HOGENOM:HOG000268807 KO:K05590 ProtClustDB:PRK11192
RefSeq:NP_716576.1 ProteinModelPortal:Q8EI96 GeneID:1168793
KEGG:son:SO_0947 PATRIC:23521551 Uniprot:Q8EI96
Length = 420
Score = 347 (127.2 bits), Expect = 4.0e-42, Sum P(2) = 4.0e-42
Identities = 95/325 (29%), Positives = 165/325 (50%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ +G L PT IQ+ +P L+ +D+L RA TG+GKT +F +P +Q +I+ +
Sbjct: 13 LESLKAMGHLSPTTIQQETLPHALEQRDILARAPTGTGKTASFLLPALQHLIDFPRRYSG 72
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
Q + L+L+P++EL +Q+H+ L + + I+ V + QE L DI+VA
Sbjct: 73 Q-ARVLILTPTRELASQIHRYACHLAT--DQGLNIAIITGGVPYAPQEEALKGNIDILVA 129
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + +L +S ++I+IIDEAD + G+ +KA+ Q +L SATL
Sbjct: 130 TPGRLMEYLDKGKFSAES-VDILIIDEADRMLDMGFSAVVKAIALEAQGRKQNMLFSATL 188
Query: 210 S-EDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGK 268
V+ +L +P+ + ++ P H+ +D K +L LLK V+ +
Sbjct: 189 EGSGVIRFAREVLNDPIEIDVDAPRKEKAKIHQWIHLADDKDHKFALLCHLLKQEDVK-R 247
Query: 269 TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA- 327
I+FV T D L+ L Q I + ++ K R A+ +F +G +V++A+D A
Sbjct: 248 AIVFVKTRDVVSSLEGQLLQAGIPCAFMRGDMEQKKRFQALSRFTKGEVNVLLATDVAAR 307
Query: 328 -LETPQINSTNNRKRKRDKESGVSR 351
++ I+ N R ++ + R
Sbjct: 308 GIDIDDISHVINFDMPRSADTYIHR 332
Score = 120 (47.3 bits), Expect = 4.0e-42, Sum P(2) = 4.0e-42
Identities = 23/52 (44%), Positives = 31/52 (59%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLM 401
+RGID +S+VINFD P YIHR GRT R +GTA+S + ++
Sbjct: 306 ARGIDIDDISHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEAHDMRIV 357
>TIGR_CMR|SO_0947 [details] [associations]
symbol:SO_0947 "ATP-dependent RNA helicase SrmB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
HOGENOM:HOG000268807 KO:K05590 ProtClustDB:PRK11192
RefSeq:NP_716576.1 ProteinModelPortal:Q8EI96 GeneID:1168793
KEGG:son:SO_0947 PATRIC:23521551 Uniprot:Q8EI96
Length = 420
Score = 347 (127.2 bits), Expect = 4.0e-42, Sum P(2) = 4.0e-42
Identities = 95/325 (29%), Positives = 165/325 (50%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+++ +G L PT IQ+ +P L+ +D+L RA TG+GKT +F +P +Q +I+ +
Sbjct: 13 LESLKAMGHLSPTTIQQETLPHALEQRDILARAPTGTGKTASFLLPALQHLIDFPRRYSG 72
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
Q + L+L+P++EL +Q+H+ L + + I+ V + QE L DI+VA
Sbjct: 73 Q-ARVLILTPTRELASQIHRYACHLAT--DQGLNIAIITGGVPYAPQEEALKGNIDILVA 129
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + +L +S ++I+IIDEAD + G+ +KA+ Q +L SATL
Sbjct: 130 TPGRLMEYLDKGKFSAES-VDILIIDEADRMLDMGFSAVVKAIALEAQGRKQNMLFSATL 188
Query: 210 S-EDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGK 268
V+ +L +P+ + ++ P H+ +D K +L LLK V+ +
Sbjct: 189 EGSGVIRFAREVLNDPIEIDVDAPRKEKAKIHQWIHLADDKDHKFALLCHLLKQEDVK-R 247
Query: 269 TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA- 327
I+FV T D L+ L Q I + ++ K R A+ +F +G +V++A+D A
Sbjct: 248 AIVFVKTRDVVSSLEGQLLQAGIPCAFMRGDMEQKKRFQALSRFTKGEVNVLLATDVAAR 307
Query: 328 -LETPQINSTNNRKRKRDKESGVSR 351
++ I+ N R ++ + R
Sbjct: 308 GIDIDDISHVINFDMPRSADTYIHR 332
Score = 120 (47.3 bits), Expect = 4.0e-42, Sum P(2) = 4.0e-42
Identities = 23/52 (44%), Positives = 31/52 (59%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLM 401
+RGID +S+VINFD P YIHR GRT R +GTA+S + ++
Sbjct: 306 ARGIDIDDISHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEAHDMRIV 357
>TIGR_CMR|CPS_4097 [details] [associations]
symbol:CPS_4097 "ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
"RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000083 GenomeReviews:CP000083_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K05590
ProtClustDB:PRK11192 RefSeq:YP_270752.2 ProteinModelPortal:Q47WS0
STRING:Q47WS0 PRIDE:Q47WS0 GeneID:3520098 KEGG:cps:CPS_4097
PATRIC:21471063 OMA:YLDKGHF BioCyc:CPSY167879:GI48-4110-MONOMER
Uniprot:Q47WS0
Length = 430
Score = 338 (124.0 bits), Expect = 9.5e-42, Sum P(2) = 9.5e-42
Identities = 100/327 (30%), Positives = 174/327 (53%)
Query: 7 WLEPTLIQVYFELPFT-FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTG 65
W+ TL ++ L F F L L +I K+G+ +PT IQE IP + KDVL A TG
Sbjct: 3 WVLLTLSEL--SLMFEQFDLDSELLASINKIGYTKPTSIQELVIPQAMVGKDVLASAPTG 60
Query: 66 SGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCV 125
+GKT AF +P+ Q +++ +T + + L+L+P++EL Q+ ++ ++LT + ++ +K
Sbjct: 61 TGKTAAFLLPIAQHLLDYPRT-KPGFPRVLILTPTRELAIQIGEDSEQLT-ELTK-IKTG 117
Query: 126 DISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGY 185
I+ V+ +L DI+VATP R L +++ + D + +EI+++DEAD + G+
Sbjct: 118 VITGGVNYGSHADILTSTTDILVATPGRLLEYIENEQFDARE-IEILVLDEADRMLDLGF 176
Query: 186 EDDMKAVLKFLPKLYQAILASATL-SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHY- 243
+ + ++ Q +L SATL S V +L PV L+ +P+ + + +
Sbjct: 177 SETINRIVAEARWRKQTMLFSATLESPGVQLFAEEVLNEPVFLE-SKPSRKEKAVIHQWL 235
Query: 244 HILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKL--KLYLEQFKISTCV-LNSEL 300
H+ + K +L LK V+ +T++F N + L KLY E+ CV L ++
Sbjct: 236 HLADDANHKLNLLVNTLKQEGVE-RTVVFANKRETVQYLSGKLYAEELP---CVWLEGKM 291
Query: 301 PAKARCHAVYQFNQGLYDVIIASDEKA 327
P R A+ +F +G V++A+D A
Sbjct: 292 PQDKRNKAIERFKKGEVKVLVATDVAA 318
Score = 127 (49.8 bits), Expect = 9.5e-42, Sum P(2) = 9.5e-42
Identities = 23/52 (44%), Positives = 33/52 (63%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLM 401
+RG+D +S+VINFD P + YIHR GRT R +GTA+S V + ++
Sbjct: 318 ARGLDIDDISHVINFDMPRKVDIYIHRIGRTGRAGKKGTAISLVEAHDMGVI 369
Score = 37 (18.1 bits), Expect = 2.6e-32, Sum P(2) = 2.6e-32
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 404 GTALSFVSLREQDLMNDVNEYLMTNL 429
GTA+S V + ++ + Y L
Sbjct: 355 GTAISLVEAHDMGVIGKIERYTKERL 380
Score = 37 (18.1 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 1 AIAKLGWLEPTLIQ 14
+I K+G+ +PT IQ
Sbjct: 27 SINKIGYTKPTSIQ 40
>POMBASE|SPAC823.08c [details] [associations]
symbol:SPAC823.08c "ATP-dependent RNA helicase Rrp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC823.08c GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P RefSeq:NP_593835.1 ProteinModelPortal:Q9P6N8
SMR:Q9P6N8 STRING:Q9P6N8 EnsemblFungi:SPAC823.08c.1 GeneID:2543571
KEGG:spo:SPAC823.08c NextBio:20804578 Uniprot:Q9P6N8
Length = 465
Score = 346 (126.9 bits), Expect = 2.2e-41, Sum P(2) = 2.2e-41
Identities = 99/324 (30%), Positives = 164/324 (50%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ 90
+A KLG+ PT IQ+ AIP++L +DV+ A+TGSGKT AFA+P+IQ++ N
Sbjct: 59 EACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWN-----NPS 113
Query: 91 ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVAT 150
A+VL+P++EL Q+ + + + S V+ V I +D+ Q L ++P ++V T
Sbjct: 114 PFFAVVLAPTRELAYQISEQFEAIGG--SIGVRSVVIVGGMDMVTQAVALSKKPHVLVCT 171
Query: 151 PARALAHLK-AKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
P R + HL+ K LK+ L+ +I+DEAD + + + +LK +P + +L SAT+
Sbjct: 172 PGRLMDHLENTKGFSLKN-LKYLIMDEADRLLDMDFGPIIDKILKIIPHERRTLLFSATM 230
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+ V L+ L PV + + + V L ++ K T L L+ L
Sbjct: 231 TSKVEKLQRASLHQPVRVAVSSK-FSTVDTLIQRYLFFPFKHKDTYLVYLVN-ELAGNSI 288
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA-- 327
IIF TV+ +L + L S L+ +L R A+ +F G ++A+D A
Sbjct: 289 IIFARTVNDTQRLAILLRTLGFSAIPLHGQLSQSNRLGALNKFKSGARSTLVATDVAARG 348
Query: 328 LETPQINSTNNRKRKRDKESGVSR 351
L+ P ++ N D ++ + R
Sbjct: 349 LDIPLVDVVINYDIPTDSKAYIHR 372
Score = 114 (45.2 bits), Expect = 2.2e-41, Sum P(2) = 2.2e-41
Identities = 21/45 (46%), Positives = 29/45 (64%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVS 394
+RG+D V VIN+D P D + YIHR GRTAR G +++ V+
Sbjct: 346 ARGLDIPLVDVVINYDIPTDSKAYIHRVGRTARAGRAGKSIALVT 390
>TIGR_CMR|CPS_3401 [details] [associations]
symbol:CPS_3401 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_270076.1 ProteinModelPortal:Q47YP4
STRING:Q47YP4 GeneID:3521057 KEGG:cps:CPS_3401 PATRIC:21469753
OMA:HLIKEHQ ProtClustDB:CLSK907013
BioCyc:CPSY167879:GI48-3430-MONOMER Uniprot:Q47YP4
Length = 432
Score = 366 (133.9 bits), Expect = 4.1e-41, Sum P(2) = 4.1e-41
Identities = 101/312 (32%), Positives = 165/312 (52%)
Query: 20 PFTFT-LFCI-PLQA-IAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPM 76
P TFT L I PL A +A+L + +PT IQ RAIP + +D++ A TGSGKT FA+PM
Sbjct: 7 PATFTELGLITPLLARLAELEYHQPTPIQARAIPSVFAGRDLIAGANTGSGKTATFALPM 66
Query: 77 IQK----IINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVD 132
+QK I + + ++ LVL P++EL Q+ +I+ + + ++K + + V
Sbjct: 67 LQKLREDISSGSKNSKGNFVTGLVLVPTRELAKQVADSIKSYAVHFNGEIKTLAVFGGVS 126
Query: 133 VSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAV 192
V++Q L DI+VATP R L + + + L ++ +++DEAD + S G+ +++ A+
Sbjct: 127 VNIQMLALRGGVDILVATPGRLLDLISSNAIKL-DKVKTLVLDEADRMLSLGFTEELTAL 185
Query: 193 LKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEK 252
L PK Q +L SAT E V +L +L NP+ ++L+ A S L + EK
Sbjct: 186 LALTPKKKQTLLFSATFPEQVTTLTQELLNNPIEIQLQS---ADASTLVQRVFTVNKGEK 242
Query: 253 ATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQF 312
+L L++ + + +IFVN C L L + I+ V + + R + F
Sbjct: 243 TAVLAHLIQQEQWR-QALIFVNAKHHCEHLAEKLAKRGITAAVFHGDKGQSERSRVLDGF 301
Query: 313 NQGLYDVIIASD 324
G +V+IA+D
Sbjct: 302 KAGDIEVLIATD 313
Score = 87 (35.7 bits), Expect = 4.1e-41, Sum P(2) = 4.1e-41
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFV 393
+RG+D + + VINF+ P Y+HR GR+ R G A+S +
Sbjct: 316 ARGLDIEKLPVVINFNLPRSPSDYMHRIGRSGRAGEVGLAISLI 359
Score = 39 (18.8 bits), Expect = 4.4e-36, Sum P(2) = 4.4e-36
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 327 ALETPQINSTNNRKRKRDKESGVSRGI 353
A+E P K+KR K++ V+ I
Sbjct: 398 AVEKPMAAPEGTGKKKRKKKTSVNADI 424
>UNIPROTKB|Q73EU1 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:222523 "Bacillus cereus ATCC 10987" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017194
RefSeq:NP_976595.1 ProteinModelPortal:Q73EU1 STRING:Q73EU1
DNASU:2752637 EnsemblBacteria:EBBACT00000029857 GeneID:2752637
GenomeReviews:AE017194_GR KEGG:bca:BCE_0267 PATRIC:18849372
Uniprot:Q73EU1
Length = 525
Score = 360 (131.8 bits), Expect = 5.3e-41, Sum P(2) = 5.3e-41
Identities = 93/324 (28%), Positives = 176/324 (54%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQ++ +G+ E T IQ IP LQ KD++ +A+TG+GKT AF +P++ K+ K++ Q
Sbjct: 14 LQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQ- 72
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+V++P++EL Q+ + + ++ K R V+ + I D++ Q L + P I+V
Sbjct: 73 ----GIVIAPTRELAIQVGEELYKIG-KHKR-VRILPIYGGQDINRQIRALKKHPHIIVG 126
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H+ KTL L++ +E V++DEAD + + G+ +D++A+L +P+ +Q +L SAT+
Sbjct: 127 TPGRILDHINRKTLRLQN-VETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATM 185
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+ + + + P +K++ + + + +++ QE +K +L LL + +
Sbjct: 186 PDPIRRIAERFMTEPQHIKVKAKEVT-MPNIQQFYLEVQEKKKFDVLTRLLDIQSPE-LA 243
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA-- 327
I+F T + +L L + ++ +L R + +F +G +V++A+D A
Sbjct: 244 IVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARG 303
Query: 328 LETPQINSTNNRKRKRDKESGVSR 351
L+ + N +D ES V R
Sbjct: 304 LDISGVTHVYNFDIPQDPESYVHR 327
Score = 123 (48.4 bits), Expect = 5.3e-41, Sum P(2) = 5.3e-41
Identities = 26/70 (37%), Positives = 41/70 (58%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSF 409
+RG+D V++V NFD P D + Y+HR GRT R +G A+ FV+ RE + + +
Sbjct: 301 ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKN---IER 357
Query: 410 VSLREQDLMN 419
+ R+ D M+
Sbjct: 358 TTKRKMDRMD 367
>UNIPROTKB|A0R8U6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:412694 "Bacillus thuringiensis str. Al Hakam" [GO:0003723
"RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 EMBL:CP000485 RefSeq:YP_893146.1
ProteinModelPortal:A0R8U6 STRING:A0R8U6
EnsemblBacteria:EBBACT00000069056 GeneID:4546566
GenomeReviews:CP000485_GR KEGG:btl:BALH_0232 PATRIC:18992499
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
BioCyc:BTHU412694:GH1W-393-MONOMER Uniprot:A0R8U6
Length = 528
Score = 360 (131.8 bits), Expect = 6.2e-41, Sum P(2) = 6.2e-41
Identities = 93/324 (28%), Positives = 176/324 (54%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQ++ +G+ E T IQ IP LQ KD++ +A+TG+GKT AF +P++ K+ K++ Q
Sbjct: 14 LQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQ- 72
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+V++P++EL Q+ + + ++ K R V+ + I D++ Q L + P I+V
Sbjct: 73 ----GIVIAPTRELAIQVGEELYKIG-KHKR-VRILPIYGGQDINRQIRALKKHPHIIVG 126
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H+ KTL L++ +E V++DEAD + + G+ +D++A+L +P+ +Q +L SAT+
Sbjct: 127 TPGRILDHINRKTLRLQN-VETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATM 185
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+ + + + P +K++ + + + +++ QE +K +L LL + +
Sbjct: 186 PDPIRRIAERFMTEPQHIKVKAKEVT-MPNIQQFYLEVQEKKKFDVLTRLLDIQSPE-LA 243
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA-- 327
I+F T + +L L + ++ +L R + +F +G +V++A+D A
Sbjct: 244 IVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARG 303
Query: 328 LETPQINSTNNRKRKRDKESGVSR 351
L+ + N +D ES V R
Sbjct: 304 LDISGVTHVYNFDIPQDPESYVHR 327
Score = 123 (48.4 bits), Expect = 6.2e-41, Sum P(2) = 6.2e-41
Identities = 26/70 (37%), Positives = 41/70 (58%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSF 409
+RG+D V++V NFD P D + Y+HR GRT R +G A+ FV+ RE + + +
Sbjct: 301 ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKN---IER 357
Query: 410 VSLREQDLMN 419
+ R+ D M+
Sbjct: 358 TTKRKMDRMD 367
>UNIPROTKB|Q63GX5 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:288681 "Bacillus cereus E33L" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0043590
"bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:CP000001 RefSeq:YP_081836.1
ProteinModelPortal:Q63GX5 STRING:Q63GX5
EnsemblBacteria:EBBACT00000041470 GeneID:3022962
GenomeReviews:CP000001_GR KEGG:bcz:BCZK0221 PATRIC:18883656
BioCyc:BCER288681:GHG7-745-MONOMER Uniprot:Q63GX5
Length = 528
Score = 360 (131.8 bits), Expect = 6.2e-41, Sum P(2) = 6.2e-41
Identities = 93/324 (28%), Positives = 176/324 (54%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQ++ +G+ E T IQ IP LQ KD++ +A+TG+GKT AF +P++ K+ K++ Q
Sbjct: 14 LQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQ- 72
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+V++P++EL Q+ + + ++ K R V+ + I D++ Q L + P I+V
Sbjct: 73 ----GIVIAPTRELAIQVGEELYKIG-KHKR-VRILPIYGGQDINRQIRALKKHPHIIVG 126
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H+ KTL L++ +E V++DEAD + + G+ +D++A+L +P+ +Q +L SAT+
Sbjct: 127 TPGRILDHINRKTLRLQN-VETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATM 185
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+ + + + P +K++ + + + +++ QE +K +L LL + +
Sbjct: 186 PDPIRRIAERFMTEPQHIKVKAKEVT-MPNIQQFYLEVQEKKKFDVLTRLLDIQSPE-LA 243
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA-- 327
I+F T + +L L + ++ +L R + +F +G +V++A+D A
Sbjct: 244 IVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARG 303
Query: 328 LETPQINSTNNRKRKRDKESGVSR 351
L+ + N +D ES V R
Sbjct: 304 LDISGVTHVYNFDIPQDPESYVHR 327
Score = 123 (48.4 bits), Expect = 6.2e-41, Sum P(2) = 6.2e-41
Identities = 26/70 (37%), Positives = 41/70 (58%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSF 409
+RG+D V++V NFD P D + Y+HR GRT R +G A+ FV+ RE + + +
Sbjct: 301 ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKN---IER 357
Query: 410 VSLREQDLMN 419
+ R+ D M+
Sbjct: 358 TTKRKMDRMD 367
>UNIPROTKB|Q6HPE6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:281309 "Bacillus thuringiensis serovar konkukian str.
97-27" [GO:0003723 "RNA binding" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017355 RefSeq:YP_034574.1
ProteinModelPortal:Q6HPE6 EnsemblBacteria:EBBACT00000074889
GeneID:2854643 GenomeReviews:AE017355_GR KEGG:btk:BT9727_0219
PATRIC:18980863 BioCyc:BTHU281309:GJID-254-MONOMER Uniprot:Q6HPE6
Length = 528
Score = 360 (131.8 bits), Expect = 6.2e-41, Sum P(2) = 6.2e-41
Identities = 93/324 (28%), Positives = 176/324 (54%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQ++ +G+ E T IQ IP LQ KD++ +A+TG+GKT AF +P++ K+ K++ Q
Sbjct: 14 LQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQ- 72
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+V++P++EL Q+ + + ++ K R V+ + I D++ Q L + P I+V
Sbjct: 73 ----GIVIAPTRELAIQVGEELYKIG-KHKR-VRILPIYGGQDINRQIRALKKHPHIIVG 126
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H+ KTL L++ +E V++DEAD + + G+ +D++A+L +P+ +Q +L SAT+
Sbjct: 127 TPGRILDHINRKTLRLQN-VETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATM 185
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+ + + + P +K++ + + + +++ QE +K +L LL + +
Sbjct: 186 PDPIRRIAERFMTEPQHIKVKAKEVT-MPNIQQFYLEVQEKKKFDVLTRLLDIQSPE-LA 243
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA-- 327
I+F T + +L L + ++ +L R + +F +G +V++A+D A
Sbjct: 244 IVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARG 303
Query: 328 LETPQINSTNNRKRKRDKESGVSR 351
L+ + N +D ES V R
Sbjct: 304 LDISGVTHVYNFDIPQDPESYVHR 327
Score = 123 (48.4 bits), Expect = 6.2e-41, Sum P(2) = 6.2e-41
Identities = 26/70 (37%), Positives = 41/70 (58%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSF 409
+RG+D V++V NFD P D + Y+HR GRT R +G A+ FV+ RE + + +
Sbjct: 301 ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKN---IER 357
Query: 410 VSLREQDLMN 419
+ R+ D M+
Sbjct: 358 TTKRKMDRMD 367
>UNIPROTKB|Q81VG0 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:1392 "Bacillus anthracis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 360 (131.8 bits), Expect = 6.2e-41, Sum P(2) = 6.2e-41
Identities = 93/324 (28%), Positives = 176/324 (54%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQ++ +G+ E T IQ IP LQ KD++ +A+TG+GKT AF +P++ K+ K++ Q
Sbjct: 14 LQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQ- 72
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+V++P++EL Q+ + + ++ K R V+ + I D++ Q L + P I+V
Sbjct: 73 ----GIVIAPTRELAIQVGEELYKIG-KHKR-VRILPIYGGQDINRQIRALKKHPHIIVG 126
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H+ KTL L++ +E V++DEAD + + G+ +D++A+L +P+ +Q +L SAT+
Sbjct: 127 TPGRILDHINRKTLRLQN-VETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATM 185
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+ + + + P +K++ + + + +++ QE +K +L LL + +
Sbjct: 186 PDPIRRIAERFMTEPQHIKVKAKEVT-MPNIQQFYLEVQEKKKFDVLTRLLDIQSPE-LA 243
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA-- 327
I+F T + +L L + ++ +L R + +F +G +V++A+D A
Sbjct: 244 IVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARG 303
Query: 328 LETPQINSTNNRKRKRDKESGVSR 351
L+ + N +D ES V R
Sbjct: 304 LDISGVTHVYNFDIPQDPESYVHR 327
Score = 123 (48.4 bits), Expect = 6.2e-41, Sum P(2) = 6.2e-41
Identities = 26/70 (37%), Positives = 41/70 (58%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSF 409
+RG+D V++V NFD P D + Y+HR GRT R +G A+ FV+ RE + + +
Sbjct: 301 ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKN---IER 357
Query: 410 VSLREQDLMN 419
+ R+ D M+
Sbjct: 358 TTKRKMDRMD 367
>TIGR_CMR|BA_0247 [details] [associations]
symbol:BA_0247 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 360 (131.8 bits), Expect = 6.2e-41, Sum P(2) = 6.2e-41
Identities = 93/324 (28%), Positives = 176/324 (54%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQ++ +G+ E T IQ IP LQ KD++ +A+TG+GKT AF +P++ K+ K++ Q
Sbjct: 14 LQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQ- 72
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+V++P++EL Q+ + + ++ K R V+ + I D++ Q L + P I+V
Sbjct: 73 ----GIVIAPTRELAIQVGEELYKIG-KHKR-VRILPIYGGQDINRQIRALKKHPHIIVG 126
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H+ KTL L++ +E V++DEAD + + G+ +D++A+L +P+ +Q +L SAT+
Sbjct: 127 TPGRILDHINRKTLRLQN-VETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATM 185
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+ + + + P +K++ + + + +++ QE +K +L LL + +
Sbjct: 186 PDPIRRIAERFMTEPQHIKVKAKEVT-MPNIQQFYLEVQEKKKFDVLTRLLDIQSPE-LA 243
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA-- 327
I+F T + +L L + ++ +L R + +F +G +V++A+D A
Sbjct: 244 IVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARG 303
Query: 328 LETPQINSTNNRKRKRDKESGVSR 351
L+ + N +D ES V R
Sbjct: 304 LDISGVTHVYNFDIPQDPESYVHR 327
Score = 123 (48.4 bits), Expect = 6.2e-41, Sum P(2) = 6.2e-41
Identities = 26/70 (37%), Positives = 41/70 (58%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSF 409
+RG+D V++V NFD P D + Y+HR GRT R +G A+ FV+ RE + + +
Sbjct: 301 ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKN---IER 357
Query: 410 VSLREQDLMN 419
+ R+ D M+
Sbjct: 358 TTKRKMDRMD 367
>UNIPROTKB|Q81IT9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:226900 "Bacillus cereus ATCC 14579" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE016877 RefSeq:NP_830127.1
STRING:Q81IT9 DNASU:1202612 EnsemblBacteria:EBBACT00000032730
GeneID:1202612 GenomeReviews:AE016877_GR KEGG:bce:BC0259
PATRIC:32596146 BioCyc:BCER226900:GJEU-261-MONOMER Uniprot:Q81IT9
Length = 533
Score = 360 (131.8 bits), Expect = 7.8e-41, Sum P(2) = 7.8e-41
Identities = 93/324 (28%), Positives = 176/324 (54%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQ++ +G+ E T IQ IP LQ KD++ +A+TG+GKT AF +P++ K+ K++ Q
Sbjct: 14 LQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQ- 72
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+V++P++EL Q+ + + ++ K R V+ + I D++ Q L + P I+V
Sbjct: 73 ----GIVIAPTRELAIQVGEELYKIG-KHKR-VRILPIYGGQDINRQIRALKKHPHIIVG 126
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H+ KTL L++ +E V++DEAD + + G+ +D++A+L +P+ +Q +L SAT+
Sbjct: 127 TPGRILDHINRKTLRLQN-VETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATM 185
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+ + + + P +K++ + + + +++ QE +K +L LL + +
Sbjct: 186 PDPIRRIAERFMTEPQHIKVKAKEVT-MPNIQQFYLEVQEKKKFDVLTRLLDIQSPE-LA 243
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA-- 327
I+F T + +L L + ++ +L R + +F +G +V++A+D A
Sbjct: 244 IVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARG 303
Query: 328 LETPQINSTNNRKRKRDKESGVSR 351
L+ + N +D ES V R
Sbjct: 304 LDISGVTHVYNFDIPQDPESYVHR 327
Score = 123 (48.4 bits), Expect = 7.8e-41, Sum P(2) = 7.8e-41
Identities = 26/70 (37%), Positives = 41/70 (58%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSF 409
+RG+D V++V NFD P D + Y+HR GRT R +G A+ FV+ RE + + +
Sbjct: 301 ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKN---IER 357
Query: 410 VSLREQDLMN 419
+ R+ D M+
Sbjct: 358 TTKRKMDRMD 367
>UNIPROTKB|A1A4H6 [details] [associations]
symbol:DDX27 "Probable ATP-dependent RNA helicase DDX27"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:BC126497 IPI:IPI00734460 RefSeq:NP_001073740.1 UniGene:Bt.2644
ProteinModelPortal:A1A4H6 PRIDE:A1A4H6 Ensembl:ENSBTAT00000057089
GeneID:514567 KEGG:bta:514567 CTD:55661
GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH NextBio:20871404
Uniprot:A1A4H6
Length = 765
Score = 372 (136.0 bits), Expect = 1.6e-40, Sum P(2) = 1.6e-40
Identities = 96/301 (31%), Positives = 163/301 (54%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AI +G+ +PT IQ+ IP+ L KD+ A TG+GKT AFA+P+++++I + A V
Sbjct: 199 LKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYKPRQAPV 258
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T+ LVL P++EL Q+H ++L CS C+ + +DV QE L PDI++A
Sbjct: 259 --TRVLVLVPTRELGIQVHSVTKQLAQFCSITT-CLAVGG-LDVKSQEAALRAAPDILIA 314
Query: 150 TPARALAHL-KAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
TP R + HL + L SS+E++I+DEAD + +E+ MK +++ Q +L SAT
Sbjct: 315 TPGRLIDHLHNCPSFHL-SSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLFSAT 373
Query: 209 LSEDVLSLKHLILRNPV-ILKLEEPAIAPVSQLAHYHILA-QEDEKATILYTLLKLNLVQ 266
++++V L + L+NPV I +AP + I +E ++ I+ LL +
Sbjct: 374 MTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALL-MRTFT 432
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
++F T + +++ + L + L+ L R A+ +F D+++A+D
Sbjct: 433 DHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVA 492
Query: 327 A 327
A
Sbjct: 493 A 493
Score = 118 (46.6 bits), Expect = 1.6e-40, Sum P(2) = 1.6e-40
Identities = 25/72 (34%), Positives = 40/72 (55%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSF 409
+RG+D + V VINF P I+ Y+HR GRTAR G ++S V E+ ++ + +
Sbjct: 493 ARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKAAK 552
Query: 410 VSLREQDLMNDV 421
++ + L DV
Sbjct: 553 APVKARILPQDV 564
>MGI|MGI:2385884 [details] [associations]
symbol:Ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 27"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:2385884 GO:GO:0005524
GO:GO:0005634 EMBL:CH466551 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 CTD:55661
GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH OrthoDB:EOG4NVZJV
EMBL:AK134274 EMBL:AK138442 EMBL:AL591711 EMBL:BC011321
EMBL:BC024730 EMBL:BC026381 IPI:IPI00122038 IPI:IPI00230236
RefSeq:NP_694705.2 UniGene:Mm.295031 ProteinModelPortal:Q921N6
SMR:Q921N6 PhosphoSite:Q921N6 PaxDb:Q921N6 PRIDE:Q921N6
Ensembl:ENSMUST00000018143 Ensembl:ENSMUST00000150571 GeneID:228889
KEGG:mmu:228889 UCSC:uc008nza.1 InParanoid:Q3UUG2 NextBio:379240
Bgee:Q921N6 CleanEx:MM_DDX27 Genevestigator:Q921N6
GermOnline:ENSMUSG00000017999 Uniprot:Q921N6
Length = 760
Score = 372 (136.0 bits), Expect = 1.9e-40, Sum P(2) = 1.9e-40
Identities = 96/301 (31%), Positives = 163/301 (54%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AI +G+ +PT IQ+ IP+ L KD+ A TG+GKT AFA+P+++++I + A V
Sbjct: 196 LKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYKPRQAAV 255
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T+ LVL P++EL Q+H ++L CS C+ + +DV QE L PDI++A
Sbjct: 256 --TRVLVLVPTRELGIQVHSVTKQLAQFCSITT-CLAVGG-LDVKSQEAALRAAPDILIA 311
Query: 150 TPARALAHL-KAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
TP R + HL + L SS+E++I+DEAD + +E+ MK +++ Q +L SAT
Sbjct: 312 TPGRLIDHLHNCPSFHL-SSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLFSAT 370
Query: 209 LSEDVLSLKHLILRNPV-ILKLEEPAIAPVSQLAHYHILA-QEDEKATILYTLLKLNLVQ 266
++++V L + L+NPV I +AP + I +E ++ I+ LL +
Sbjct: 371 MTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALL-MRTFT 429
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
++F T + +++ + L + L+ L R A+ +F D+++A+D
Sbjct: 430 DHVMLFTQTKKQAHRMHILLGLLGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVA 489
Query: 327 A 327
A
Sbjct: 490 A 490
Score = 117 (46.2 bits), Expect = 1.9e-40, Sum P(2) = 1.9e-40
Identities = 24/72 (33%), Positives = 40/72 (55%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSF 409
+RG+D + V VINF P ++ Y+HR GRTAR G ++S V E+ ++ + +
Sbjct: 490 ARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKAAK 549
Query: 410 VSLREQDLMNDV 421
++ + L DV
Sbjct: 550 APVKARILPQDV 561
>UNIPROTKB|Q9KLH6 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 346 (126.9 bits), Expect = 2.5e-40, Sum P(2) = 2.5e-40
Identities = 101/329 (30%), Positives = 169/329 (51%)
Query: 18 ELPFTFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAI 74
EL TF+ + L +++LG PT IQ++AIP +LQ KDVL A+TG+GKT AF +
Sbjct: 3 ELSITFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGL 62
Query: 75 PMIQKIINL--KQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVD 132
P+IQ+ I ++ A +E +ALVL P++EL Q+ ++Q ++K V +
Sbjct: 63 PLIQRFIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAK--GTELKIVAVYGGTS 120
Query: 133 VSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAV 192
+ VQ L DI++ATP R L H K+L L +E++++DEAD + G+ D++ V
Sbjct: 121 MKVQLNHLRGGVDILIATPGRLLDHAHVKSLFL-GKVEVLVLDEADRMLDMGFMPDLQRV 179
Query: 193 LKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEP-AIAPVSQLAHYHILAQEDE 251
L+ L L Q + SAT + ++ + I+R+P+ +++ + A Q Y + ++ +
Sbjct: 180 LRRLSPLRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPV-DKKRK 238
Query: 252 KATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQ 311
+ + Y + N Q ++F T L L+ I +N + AR A+
Sbjct: 239 RELLSYLIGSKNWQQ--VLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDD 296
Query: 312 FNQGLYDVIIASDEKA--LETPQINSTNN 338
F G +IA+D A L+ Q+ N
Sbjct: 297 FKAGKVRALIATDVAARGLDIAQLEQVVN 325
Score = 104 (41.7 bits), Expect = 2.5e-40, Sum P(2) = 2.5e-40
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQ 398
+RG+D + V+N+D P + Y+HR GRT R G A+S +S EQ
Sbjct: 312 ARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQ 360
>TIGR_CMR|VC_A0768 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 346 (126.9 bits), Expect = 2.5e-40, Sum P(2) = 2.5e-40
Identities = 101/329 (30%), Positives = 169/329 (51%)
Query: 18 ELPFTFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAI 74
EL TF+ + L +++LG PT IQ++AIP +LQ KDVL A+TG+GKT AF +
Sbjct: 3 ELSITFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGL 62
Query: 75 PMIQKIINL--KQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVD 132
P+IQ+ I ++ A +E +ALVL P++EL Q+ ++Q ++K V +
Sbjct: 63 PLIQRFIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAK--GTELKIVAVYGGTS 120
Query: 133 VSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAV 192
+ VQ L DI++ATP R L H K+L L +E++++DEAD + G+ D++ V
Sbjct: 121 MKVQLNHLRGGVDILIATPGRLLDHAHVKSLFL-GKVEVLVLDEADRMLDMGFMPDLQRV 179
Query: 193 LKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEP-AIAPVSQLAHYHILAQEDE 251
L+ L L Q + SAT + ++ + I+R+P+ +++ + A Q Y + ++ +
Sbjct: 180 LRRLSPLRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPV-DKKRK 238
Query: 252 KATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQ 311
+ + Y + N Q ++F T L L+ I +N + AR A+
Sbjct: 239 RELLSYLIGSKNWQQ--VLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDD 296
Query: 312 FNQGLYDVIIASDEKA--LETPQINSTNN 338
F G +IA+D A L+ Q+ N
Sbjct: 297 FKAGKVRALIATDVAARGLDIAQLEQVVN 325
Score = 104 (41.7 bits), Expect = 2.5e-40, Sum P(2) = 2.5e-40
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQ 398
+RG+D + V+N+D P + Y+HR GRT R G A+S +S EQ
Sbjct: 312 ARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQ 360
>UNIPROTKB|P0A9P6 [details] [associations]
symbol:deaD "DeaD, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030684 "preribosome" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000027 "ribosomal large
subunit assembly" evidence=IMP] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0006401 "RNA catabolic
process" evidence=IGI] [GO:0003724 "RNA helicase activity"
evidence=IDA] [GO:0070417 "cellular response to cold"
evidence=IEP;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR021046 Pfam:PF00270 Pfam:PF00271 Pfam:PF12343
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:U18997 GO:GO:0003723 GO:GO:0006401
GO:GO:0070417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 EMBL:M63288 EMBL:U03750 PIR:F65106 RefSeq:NP_417631.2
RefSeq:YP_491349.1 ProteinModelPortal:P0A9P6 SMR:P0A9P6
DIP:DIP-35752N IntAct:P0A9P6 MINT:MINT-1219396 SWISS-2DPAGE:P0A9P6
PaxDb:P0A9P6 PRIDE:P0A9P6 EnsemblBacteria:EBESCT00000000679
EnsemblBacteria:EBESCT00000014242 GeneID:12933435 GeneID:947674
KEGG:ecj:Y75_p3084 KEGG:eco:b3162 PATRIC:32121742 EchoBASE:EB0211
EcoGene:EG10215 OMA:ILFMTPR ProtClustDB:PRK11634
BioCyc:EcoCyc:EG10215-MONOMER BioCyc:ECOL316407:JW5531-MONOMER
Genevestigator:P0A9P6 GO:GO:0030684 Uniprot:P0A9P6
Length = 629
Score = 344 (126.2 bits), Expect = 3.3e-40, Sum P(2) = 3.3e-40
Identities = 104/340 (30%), Positives = 177/340 (52%)
Query: 17 FELPFTFTLFCIP-LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIP 75
FE F P L+A+ LG+ +P+ IQ IP +L +DVL A+TGSGKT AF++P
Sbjct: 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLP 63
Query: 76 MIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSV 135
++Q NL +++ + LVL+P++EL Q+ + + + + K R V V + V
Sbjct: 64 LLQ---NLDP--ELKAPQILVLAPTRELAVQVAEAMTDFS-KHMRGVNVVALYGGQRYDV 117
Query: 136 QEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKF 195
Q L + P IVV TP R L HLK TLDL S L +++DEAD + G+ +D++ ++
Sbjct: 118 QLRALRQGPQIVVGTPGRLLDHLKRGTLDL-SKLSGLVLDEADEMLRMGFIEDVETIMAQ 176
Query: 196 LPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIA-P-VSQLAHYHILAQEDEKA 253
+P+ +Q L SAT+ E + + ++ P ++++ P +SQ +++ + +A
Sbjct: 177 IPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQ-SYWTVWGMRKNEA 235
Query: 254 TILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFN 313
+ + L+ IIFV T + ++ LE+ ++ LN ++ R + +
Sbjct: 236 LVRF--LEAEDFDA-AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLK 292
Query: 314 QGLYDVIIASDEKA--LETPQINSTNNRKRKRDKESGVSR 351
G D++IA+D A L+ +I+ N D ES V R
Sbjct: 293 DGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHR 332
Score = 147 (56.8 bits), Expect = 3.3e-40, Sum P(2) = 3.3e-40
Identities = 52/164 (31%), Positives = 77/164 (46%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSF 409
+RG+D + +S V+N+D P+D + Y+HR GRT R G AL FV RE+ L+ +
Sbjct: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365
Query: 410 VSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRSNYFEDNPTDL 469
+++ E +L N L+ + F K Q L+ +YRA + E DL
Sbjct: 366 LTIPEVELPN---AELLGKRRLEKFAAKVQQ-QLESSDLDQYRALLSKIQPTAEGEELDL 421
Query: 470 ETLRHDKALYTVRIQSHLADVPDYIVPPALKKLARIEDD-GDED 512
ETL L + + L PD + P K+ R DD G D
Sbjct: 422 ETLAA-ALLKMAQGERTLIVPPDAPMRP--KREFRDRDDRGPRD 462
>FB|FBgn0032919 [details] [associations]
symbol:CG9253 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
EMBL:AY121677 ProteinModelPortal:Q8MRB7 SMR:Q8MRB7 STRING:Q8MRB7
PaxDb:Q8MRB7 PRIDE:Q8MRB7 FlyBase:FBgn0032919 InParanoid:Q8MRB7
OrthoDB:EOG4V41Q7 ArrayExpress:Q8MRB7 Bgee:Q8MRB7 Uniprot:Q8MRB7
Length = 507
Score = 356 (130.4 bits), Expect = 4.1e-40, Sum P(2) = 4.1e-40
Identities = 93/311 (29%), Positives = 163/311 (52%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ 90
QA +L W P+ IQ AIP+ LQ KDV+ A TGSGKTGAFA+P++ ++ Q
Sbjct: 74 QACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLE-----NPQ 128
Query: 91 ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVAT 150
ALVL+P++EL Q+ + + L +KC + +D+ Q L ++P I++AT
Sbjct: 129 RYFALVLTPTRELAFQIGEQFEALGSGIG--IKCCVVVGGMDMVAQGLQLAKKPHIIIAT 186
Query: 151 PARALAHLK-AKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
P R + HL+ K +LK+ ++ +++DEAD + + +E ++ +LK LP+ + L SAT+
Sbjct: 187 PGRLVDHLENMKGFNLKA-IKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLFSATM 245
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
++ V L+ L++PV +++ V QL ++ K L +L L
Sbjct: 246 TKKVKKLQRASLKDPVKVEVSNK-YQTVEQLQQSYLFIPVKYKDVYLVHILN-ELAGNSF 303
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD--EKA 327
+IF +T + K L L ++ L+ ++ R A+ +F ++I++D +
Sbjct: 304 MIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVASRG 363
Query: 328 LETPQINSTNN 338
L+ P ++ N
Sbjct: 364 LDIPHVDVVVN 374
Score = 116 (45.9 bits), Expect = 4.1e-40, Sum P(2) = 4.1e-40
Identities = 24/51 (47%), Positives = 31/51 (60%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDL 400
SRG+D V V+NFD P + YIHR GRTAR G A++ VS + +L
Sbjct: 361 SRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIEL 411
>UNIPROTKB|Q8EDC4 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 337 (123.7 bits), Expect = 4.8e-40, Sum P(2) = 4.8e-40
Identities = 92/310 (29%), Positives = 164/310 (52%)
Query: 19 LPFT-FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMI 77
+ FT F+L LQ++ +G PT IQE+A+P+ L KD++ ++TGSGKT AF +P +
Sbjct: 1 MQFTDFSLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPAL 60
Query: 78 QKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQE 137
Q++I+ + ++ ++ + L+L P++EL +Q++ ++ L + K + + + + Q
Sbjct: 61 QRVISTRALSK-RDPRVLILLPTRELAHQVYSQLRLLV--ANTQYKAISVLGGENFNDQA 117
Query: 138 PLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLP 197
L + P +VATP R HL+ K L L + LE++I+DEAD + G+ +KA+ +
Sbjct: 118 KALAKEPHFIVATPGRIADHLEQKNLFL-NGLELLILDEADRMLDLGFAPQLKAINEAAD 176
Query: 198 -KLYQAILASATLSE-DVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQE-DEKAT 254
K Q ++ SATL ++ + +L+NP+ + + A A ++ L D K
Sbjct: 177 HKRRQTLMFSATLDHSEINEIAAALLKNPLHVAIGT-AHAEHQDISQRIYLCDHLDHKEA 235
Query: 255 ILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQ 314
+L LL + + IIF T +L L +T L+ EL AR + QF +
Sbjct: 236 LLSRLLS-DESHKQVIIFTATRADTERLAAKLSAQGFATAALSGELKQAARNQIMDQFAR 294
Query: 315 GLYDVIIASD 324
G +++ +D
Sbjct: 295 GQQQILVTTD 304
Score = 112 (44.5 bits), Expect = 4.8e-40, Sum P(2) = 4.8e-40
Identities = 24/50 (48%), Positives = 31/50 (62%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQD 399
SRG+D VS VINFD P + Y+HR GRT R +G A+S V ++ D
Sbjct: 307 SRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWD 356
Score = 40 (19.1 bits), Expect = 1.7e-32, Sum P(2) = 1.7e-32
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 381 ARGKNQGTALSFVSLREQDLMNDGTALSF 409
ARG+ Q + V+ R DL+N ++F
Sbjct: 293 ARGQQQILVTTDVASRGLDLLNVSLVINF 321
>TIGR_CMR|SO_2838 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 337 (123.7 bits), Expect = 4.8e-40, Sum P(2) = 4.8e-40
Identities = 92/310 (29%), Positives = 164/310 (52%)
Query: 19 LPFT-FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMI 77
+ FT F+L LQ++ +G PT IQE+A+P+ L KD++ ++TGSGKT AF +P +
Sbjct: 1 MQFTDFSLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPAL 60
Query: 78 QKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQE 137
Q++I+ + ++ ++ + L+L P++EL +Q++ ++ L + K + + + + Q
Sbjct: 61 QRVISTRALSK-RDPRVLILLPTRELAHQVYSQLRLLV--ANTQYKAISVLGGENFNDQA 117
Query: 138 PLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLP 197
L + P +VATP R HL+ K L L + LE++I+DEAD + G+ +KA+ +
Sbjct: 118 KALAKEPHFIVATPGRIADHLEQKNLFL-NGLELLILDEADRMLDLGFAPQLKAINEAAD 176
Query: 198 -KLYQAILASATLSE-DVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQE-DEKAT 254
K Q ++ SATL ++ + +L+NP+ + + A A ++ L D K
Sbjct: 177 HKRRQTLMFSATLDHSEINEIAAALLKNPLHVAIGT-AHAEHQDISQRIYLCDHLDHKEA 235
Query: 255 ILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQ 314
+L LL + + IIF T +L L +T L+ EL AR + QF +
Sbjct: 236 LLSRLLS-DESHKQVIIFTATRADTERLAAKLSAQGFATAALSGELKQAARNQIMDQFAR 294
Query: 315 GLYDVIIASD 324
G +++ +D
Sbjct: 295 GQQQILVTTD 304
Score = 112 (44.5 bits), Expect = 4.8e-40, Sum P(2) = 4.8e-40
Identities = 24/50 (48%), Positives = 31/50 (62%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQD 399
SRG+D VS VINFD P + Y+HR GRT R +G A+S V ++ D
Sbjct: 307 SRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWD 356
Score = 40 (19.1 bits), Expect = 1.7e-32, Sum P(2) = 1.7e-32
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 381 ARGKNQGTALSFVSLREQDLMNDGTALSF 409
ARG+ Q + V+ R DL+N ++F
Sbjct: 293 ARGQQQILVTTDVASRGLDLLNVSLVINF 321
>TIGR_CMR|SO_4034 [details] [associations]
symbol:SO_4034 "ATP-dependent RNA helicase DeaD"
species:211586 "Shewanella oneidensis MR-1" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0009631 "cold
acclimation" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:LPQGMPK RefSeq:NP_719564.1
ProteinModelPortal:Q8EA75 GeneID:1171660 KEGG:son:SO_4034
PATRIC:23527732 ProtClustDB:CLSK907463 Uniprot:Q8EA75
Length = 623
Score = 356 (130.4 bits), Expect = 9.4e-40, Sum P(2) = 9.4e-40
Identities = 97/324 (29%), Positives = 171/324 (52%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+ +LG+ +PT IQ +I ++ KD+L +A+TG+GKTGAFA+P++ K+ + + T Q+
Sbjct: 18 LRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNKVTS-QTTPQI 76
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
LVL+P++EL Q+ + K ++ + I + Q L P ++V
Sbjct: 77 -----LVLAPTRELAVQVAEAFSSYA-KFMKNFHVLPIYGGQSMQQQLNALKRGPQVIVG 130
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + H++ TL L++ L+ +++DEAD + G+ DD++ +L+ P Q L SAT+
Sbjct: 131 TPGRVMDHMRRGTLKLET-LQALVLDEADEMLKMGFIDDIEWILEHTPPQRQLALFSATM 189
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
E + + + L+N + + + V + + + K L +L++ +G
Sbjct: 190 PEQIKRVANKHLKNATNISIAA-SHTTVDSIEQRFVQVSQHNKLEALVRVLEVENTEG-I 247
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA-- 327
IIFV T + C +L LE ++ L+ ++ +AR AV Q G D++IA+D A
Sbjct: 248 IIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKNGKLDILIATDVAARG 307
Query: 328 LETPQINSTNNRKRKRDKESGVSR 351
L+ +I N D E+ V R
Sbjct: 308 LDVERIGHVVNYDIPYDTEAYVHR 331
Score = 127 (49.8 bits), Expect = 9.4e-40, Sum P(2) = 9.4e-40
Identities = 21/52 (40%), Positives = 34/52 (65%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLM 401
+RG+D + + +V+N+D P D + Y+HR GRT R G A+ FV+ RE ++
Sbjct: 305 ARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRML 356
Score = 39 (18.8 bits), Expect = 1.6e-30, Sum P(2) = 1.6e-30
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 325 EKALETPQINSTNNRKRKRDKESGVSRGID 354
E+ L+ P I +R E G RG +
Sbjct: 430 ERPLQLPAIQERVRDERSERSERGSDRGAE 459
>UNIPROTKB|Q96GQ7 [details] [associations]
symbol:DDX27 "Probable ATP-dependent RNA helicase DDX27"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
CTD:55661 HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH EMBL:AY044431
EMBL:AF336851 EMBL:AL049766 EMBL:AL357560 EMBL:BC009304
EMBL:BC011927 EMBL:BC016060 EMBL:BC126287 EMBL:BC130275
EMBL:BC144125 EMBL:AK022979 EMBL:AK000603 EMBL:AF193054
EMBL:AF161377 IPI:IPI00293078 RefSeq:NP_060365.7 UniGene:Hs.129261
UniGene:Hs.65234 ProteinModelPortal:Q96GQ7 SMR:Q96GQ7 IntAct:Q96GQ7
MINT:MINT-1420816 STRING:Q96GQ7 PhosphoSite:Q96GQ7 DMDM:29427946
SWISS-2DPAGE:Q96GQ7 PaxDb:Q96GQ7 PeptideAtlas:Q96GQ7 PRIDE:Q96GQ7
DNASU:55661 Ensembl:ENST00000371764 GeneID:55661 KEGG:hsa:55661
UCSC:uc002xuh.3 GeneCards:GC20P047835 HGNC:HGNC:15837 HPA:HPA047087
neXtProt:NX_Q96GQ7 PharmGKB:PA27213 InParanoid:Q96GQ7
OrthoDB:EOG4NVZJV PhylomeDB:Q96GQ7 ChiTaRS:DDX27 GenomeRNAi:55661
NextBio:60399 ArrayExpress:Q96GQ7 Bgee:Q96GQ7 CleanEx:HS_DDX27
Genevestigator:Q96GQ7 GermOnline:ENSG00000124228 Uniprot:Q96GQ7
Length = 796
Score = 368 (134.6 bits), Expect = 1.4e-39, Sum P(2) = 1.4e-39
Identities = 95/301 (31%), Positives = 162/301 (53%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AI +G+ +PT IQ+ IP+ L KD+ A TG+GKT AFA+P+++++I + A V
Sbjct: 230 LKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYKPRQAPV 289
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T+ LVL P++EL Q+H ++L C+ C+ + +DV QE L PDI++A
Sbjct: 290 --TRVLVLVPTRELGIQVHSVTRQLAQFCNITT-CLAVGG-LDVKSQEAALRAAPDILIA 345
Query: 150 TPARALAHL-KAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
TP R + HL + L SS+E++I+DEAD + +E+ MK +++ Q +L SAT
Sbjct: 346 TPGRLIDHLHNCPSFHL-SSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLFSAT 404
Query: 209 LSEDVLSLKHLILRNPV-ILKLEEPAIAPVSQLAHYHILA-QEDEKATILYTLLKLNLVQ 266
++++V L + L+NPV I +AP + I +E ++ I+ LL
Sbjct: 405 MTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTRTFTD 464
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
++F T + +++ + L + L+ L R A+ +F D+++A+D
Sbjct: 465 -HVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVA 523
Query: 327 A 327
A
Sbjct: 524 A 524
Score = 116 (45.9 bits), Expect = 1.4e-39, Sum P(2) = 1.4e-39
Identities = 25/72 (34%), Positives = 40/72 (55%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSF 409
+RG+D + V VINF P I+ Y+HR GRTAR G ++S V E+ ++ + +
Sbjct: 524 ARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEIVKAAK 583
Query: 410 VSLREQDLMNDV 421
++ + L DV
Sbjct: 584 APVKARILPQDV 595
>TIGR_CMR|DET_0183 [details] [associations]
symbol:DET_0183 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000027 GenomeReviews:CP000027_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_180931.1 ProteinModelPortal:Q3ZA18
STRING:Q3ZA18 GeneID:3230538 KEGG:det:DET0183 PATRIC:21607443
OMA:NFAPAVM ProtClustDB:CLSK837629
BioCyc:DETH243164:GJNF-183-MONOMER Uniprot:Q3ZA18
Length = 560
Score = 356 (130.4 bits), Expect = 1.6e-39, Sum P(2) = 1.6e-39
Identities = 98/312 (31%), Positives = 168/312 (53%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
+ + G+ EPT IQ +AIP IL+ DV+ A+TG+GKT A+A+P+IQK+++ +
Sbjct: 13 MAGVRACGYQEPTPIQAQAIPPILEGHDVIGLAQTGTGKTAAYALPVIQKMLSTPRG--- 69
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ LVL+P++EL Q+ ++ + L + +R +C I V++ Q L D+VVA
Sbjct: 70 -RVRTLVLAPTRELACQIAESFRSLGQR-ARIREC-SIYGGVNMDQQIRRLRSGVDVVVA 126
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
P R L H+ T+D+ +E +IIDEAD +F G++ D++++LK L + +Q +L SAT+
Sbjct: 127 CPGRLLDHIWRGTIDI-CGVETLIIDEADRMFDMGFQPDIQSILKCLVQPHQTLLFSATM 185
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+V L NPV +++ A P S ++H + +K +L +LK +
Sbjct: 186 PPEVRKLTLETQTNPVTIQIGTQA--PASSVSHSVYPVKNHQKTPLLIEILKTTETKS-V 242
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQ-FNQGLYDVIIASD--EK 326
+IF T L + + +T L L R HAV + F +G + +++A+D +
Sbjct: 243 LIFARTKYGAENLADEISRAGFTTASLQGNLSQNRR-HAVMEGFRRGNFKILVATDIAAR 301
Query: 327 ALETPQINSTNN 338
L+ I+ N
Sbjct: 302 GLDIDHISHVIN 313
Score = 120 (47.3 bits), Expect = 1.6e-39, Sum P(2) = 1.6e-39
Identities = 24/54 (44%), Positives = 34/54 (62%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND 403
+RG+D +S+VIN+D P + Y HR GRT R G ALS V+ R+ D++ D
Sbjct: 300 ARGLDIDHISHVINYDMPDTPEDYTHRIGRTGRFDRTGQALSLVTGRDGDMVRD 353
Score = 43 (20.2 bits), Expect = 1.9e-31, Sum P(2) = 1.9e-31
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 404 GTALSFVSLREQDLMNDVNEYL 425
G ALS V+ R+ D++ D+ + +
Sbjct: 337 GQALSLVTGRDGDMVRDIQKLI 358
>UNIPROTKB|Q8EJQ5 [details] [associations]
symbol:rhlB "ATP-dependent RNA helicase RhlB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] HAMAP:MF_00661 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR023554
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732 ProtClustDB:PRK04837
RefSeq:NP_716045.1 ProteinModelPortal:Q8EJQ5 GeneID:1168284
KEGG:son:SO_0407 PATRIC:23520517 OMA:PANAERQ Uniprot:Q8EJQ5
Length = 439
Score = 334 (122.6 bits), Expect = 1.8e-39, Sum P(2) = 1.8e-39
Identities = 97/329 (29%), Positives = 176/329 (53%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIIN--LKQTAQ 88
QA+A+ G+ T IQ ++P++LQ+KD+ +A+TG+GKT AF + +++ + + Q
Sbjct: 22 QALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNHLLSSSIPEGRQ 81
Query: 89 VQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
+ + +A++++P++EL Q+ K+ L V V E DV Q +L + DI++
Sbjct: 82 LNQPRAIIMAPTRELAIQIAKDAILLAKHTRLKVGIVYGGESYDV--QRKVLDQGVDILI 139
Query: 149 ATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAI--LAS 206
T R + +++ ++L ++++ V++DEAD +F G+ D++ + + +P Q + L S
Sbjct: 140 GTTGRIIDYVRQGIINL-NAIQAVVLDEADRMFDLGFIKDIRFLFRRMPNADQRLNMLFS 198
Query: 207 ATLSEDVLSLKHLILRNPVILKL--EEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNL 264
ATLS V L + + +PV +++ EE + + Y +QED K +L TL++ +
Sbjct: 199 ATLSMKVQELAYDHMNDPVKVEIAPEEKTSKNIKEEIFYP--SQED-KMRLLLTLIEEDW 255
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
+ K I+F NT C L +LE +L ++P K R + QF QG D+++A+D
Sbjct: 256 PE-KAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTQGQLDILVATD 314
Query: 325 EKA--LETPQINSTNNRKRKRDKESGVSR 351
A L ++ N D E V R
Sbjct: 315 VAARGLHISDVSHVYNYDLPDDCEDYVHR 343
Score = 110 (43.8 bits), Expect = 1.8e-39, Sum P(2) = 1.8e-39
Identities = 20/43 (46%), Positives = 29/43 (67%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSF 392
+RG+ VS+V N+D P D + Y+HR GRT R N+G ++SF
Sbjct: 317 ARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSF 359
>TIGR_CMR|SO_0407 [details] [associations]
symbol:SO_0407 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] HAMAP:MF_00661 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR023554
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732 ProtClustDB:PRK04837
RefSeq:NP_716045.1 ProteinModelPortal:Q8EJQ5 GeneID:1168284
KEGG:son:SO_0407 PATRIC:23520517 OMA:PANAERQ Uniprot:Q8EJQ5
Length = 439
Score = 334 (122.6 bits), Expect = 1.8e-39, Sum P(2) = 1.8e-39
Identities = 97/329 (29%), Positives = 176/329 (53%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIIN--LKQTAQ 88
QA+A+ G+ T IQ ++P++LQ+KD+ +A+TG+GKT AF + +++ + + Q
Sbjct: 22 QALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNHLLSSSIPEGRQ 81
Query: 89 VQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
+ + +A++++P++EL Q+ K+ L V V E DV Q +L + DI++
Sbjct: 82 LNQPRAIIMAPTRELAIQIAKDAILLAKHTRLKVGIVYGGESYDV--QRKVLDQGVDILI 139
Query: 149 ATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAI--LAS 206
T R + +++ ++L ++++ V++DEAD +F G+ D++ + + +P Q + L S
Sbjct: 140 GTTGRIIDYVRQGIINL-NAIQAVVLDEADRMFDLGFIKDIRFLFRRMPNADQRLNMLFS 198
Query: 207 ATLSEDVLSLKHLILRNPVILKL--EEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNL 264
ATLS V L + + +PV +++ EE + + Y +QED K +L TL++ +
Sbjct: 199 ATLSMKVQELAYDHMNDPVKVEIAPEEKTSKNIKEEIFYP--SQED-KMRLLLTLIEEDW 255
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
+ K I+F NT C L +LE +L ++P K R + QF QG D+++A+D
Sbjct: 256 PE-KAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTQGQLDILVATD 314
Query: 325 EKA--LETPQINSTNNRKRKRDKESGVSR 351
A L ++ N D E V R
Sbjct: 315 VAARGLHISDVSHVYNYDLPDDCEDYVHR 343
Score = 110 (43.8 bits), Expect = 1.8e-39, Sum P(2) = 1.8e-39
Identities = 20/43 (46%), Positives = 29/43 (67%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSF 392
+RG+ VS+V N+D P D + Y+HR GRT R N+G ++SF
Sbjct: 317 ARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSF 359
>UNIPROTKB|F1Q073 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:AAEX03013992
Ensembl:ENSCAFT00000018089 Uniprot:F1Q073
Length = 767
Score = 365 (133.5 bits), Expect = 1.9e-39, Sum P(2) = 1.9e-39
Identities = 94/301 (31%), Positives = 162/301 (53%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AI +G+ +PT IQ+ IP+ L KD+ A TG+GKT AFA+P+++++I + + V
Sbjct: 199 LKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYKPRQSPV 258
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T+ LVL P++EL Q+H ++L C+ C+ + +DV QE L PDI++A
Sbjct: 259 --TRVLVLVPTRELGIQVHSVTKQLAQFCNITT-CLAVGG-LDVKSQEAALRAAPDILIA 314
Query: 150 TPARALAHL-KAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
TP R + HL + L SS+E++I+DEAD + +E+ MK +++ Q +L SAT
Sbjct: 315 TPGRLIDHLHNCPSFHL-SSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLFSAT 373
Query: 209 LSEDVLSLKHLILRNPV-ILKLEEPAIAPVSQLAHYHILA-QEDEKATILYTLLKLNLVQ 266
++++V L + L+NPV I +AP + I +E ++ I+ LL
Sbjct: 374 MTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFVRIRPNREGDREAIVAALLTRTFTD 433
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
++F T + +++ + L + L+ L R A+ +F D+++A+D
Sbjct: 434 -HVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVA 492
Query: 327 A 327
A
Sbjct: 493 A 493
Score = 118 (46.6 bits), Expect = 1.9e-39, Sum P(2) = 1.9e-39
Identities = 25/72 (34%), Positives = 40/72 (55%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSF 409
+RG+D + V VINF P I+ Y+HR GRTAR G ++S V E+ ++ + +
Sbjct: 493 ARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKAAK 552
Query: 410 VSLREQDLMNDV 421
++ + L DV
Sbjct: 553 APVKARILPQDV 564
>UNIPROTKB|J9P9C6 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 OMA:TRTFTDH EMBL:AAEX03013992
Ensembl:ENSCAFT00000046251 Uniprot:J9P9C6
Length = 788
Score = 365 (133.5 bits), Expect = 2.2e-39, Sum P(2) = 2.2e-39
Identities = 94/301 (31%), Positives = 162/301 (53%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AI +G+ +PT IQ+ IP+ L KD+ A TG+GKT AFA+P+++++I + + V
Sbjct: 220 LKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYKPRQSPV 279
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T+ LVL P++EL Q+H ++L C+ C+ + +DV QE L PDI++A
Sbjct: 280 --TRVLVLVPTRELGIQVHSVTKQLAQFCNITT-CLAVGG-LDVKSQEAALRAAPDILIA 335
Query: 150 TPARALAHL-KAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
TP R + HL + L SS+E++I+DEAD + +E+ MK +++ Q +L SAT
Sbjct: 336 TPGRLIDHLHNCPSFHL-SSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLFSAT 394
Query: 209 LSEDVLSLKHLILRNPV-ILKLEEPAIAPVSQLAHYHILA-QEDEKATILYTLLKLNLVQ 266
++++V L + L+NPV I +AP + I +E ++ I+ LL
Sbjct: 395 MTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFVRIRPNREGDREAIVAALLTRTFTD 454
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
++F T + +++ + L + L+ L R A+ +F D+++A+D
Sbjct: 455 -HVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVA 513
Query: 327 A 327
A
Sbjct: 514 A 514
Score = 118 (46.6 bits), Expect = 2.2e-39, Sum P(2) = 2.2e-39
Identities = 25/72 (34%), Positives = 40/72 (55%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSF 409
+RG+D + V VINF P I+ Y+HR GRTAR G ++S V E+ ++ + +
Sbjct: 514 ARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKAAK 573
Query: 410 VSLREQDLMNDV 421
++ + L DV
Sbjct: 574 APVKARILPQDV 585
>UNIPROTKB|P21507 [details] [associations]
symbol:srmB "SrmB, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0033592 "RNA strand annealing activity"
evidence=IDA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IDA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0000027 "ribosomal large subunit assembly"
evidence=IGI;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
EMBL:D64044 GO:GO:0030687 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0033592 EMBL:D13169
OMA:PLAMDQR HOGENOM:HOG000268807 PDB:2YJT PDBsum:2YJT EMBL:X14152
PIR:G65035 RefSeq:NP_417071.1 RefSeq:YP_490804.1
ProteinModelPortal:P21507 SMR:P21507 DIP:DIP-10920N IntAct:P21507
MINT:MINT-1225512 PRIDE:P21507 EnsemblBacteria:EBESCT00000003180
EnsemblBacteria:EBESCT00000015098 GeneID:12934372 GeneID:947055
KEGG:ecj:Y75_p2529 KEGG:eco:b2576 PATRIC:32120551 EchoBASE:EB0968
EcoGene:EG10975 KO:K05590 ProtClustDB:PRK11192
BioCyc:EcoCyc:EG10975-MONOMER BioCyc:ECOL316407:JW2560-MONOMER
Genevestigator:P21507 Uniprot:P21507
Length = 444
Score = 326 (119.8 bits), Expect = 3.5e-39, Sum P(2) = 3.5e-39
Identities = 90/326 (27%), Positives = 164/326 (50%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+ G+ PT IQ AIP L +DVL A TG+GKT A+ +P +Q +++ +
Sbjct: 16 LEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKS- 74
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ L+L+P++EL Q+ + +EL D+ I+ V + E DIVVA
Sbjct: 75 GPPRILILTPTRELAMQVSDHARELAKHTHLDI--ATITGGVAYMNHAEVFSENQDIVVA 132
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
T R L ++K + D ++ +E +I+DEAD + G+ D++ + Q +L SATL
Sbjct: 133 TTGRLLQYIKEENFDCRA-VETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATL 191
Query: 210 SEDVLS-LKHLILRNPVILKLEEPAIAPVSQLAHYHILAQE-DEKATILYTLLKLNLVQG 267
D + +L +PV + P+ ++ ++ A + + K +L LLK
Sbjct: 192 EGDAIQDFAERLLEDPVEVSAN-PSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEAT- 249
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
++I+FV ++ ++L +L + I+ C L E+ R A+ + +G +V++A+D A
Sbjct: 250 RSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAA 309
Query: 328 --LETPQINSTNNRKRKRDKESGVSR 351
++ P ++ N R ++ + R
Sbjct: 310 RGIDIPDVSHVFNFDMPRSGDTYLHR 335
Score = 122 (48.0 bits), Expect = 3.5e-39, Sum P(2) = 3.5e-39
Identities = 25/52 (48%), Positives = 32/52 (61%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLM 401
+RGID VS+V NFD P Y+HR GRTAR +GTA+S V + L+
Sbjct: 309 ARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360
Score = 40 (19.1 bits), Expect = 1.4e-30, Sum P(2) = 1.4e-30
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 404 GTALSFVSLREQDLMNDVNEYL 425
GTA+S V + L+ V Y+
Sbjct: 346 GTAISLVEAHDHLLLGKVGRYI 367
>ASPGD|ASPL0000054300 [details] [associations]
symbol:AN0583 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 EMBL:BN001308 EMBL:AACD01000007 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14808 RefSeq:XP_658187.1 ProteinModelPortal:Q5BFU7
STRING:Q5BFU7 EnsemblFungi:CADANIAT00002094 GeneID:2876361
KEGG:ani:AN0583.2 HOGENOM:HOG000246455 OMA:HLKVEMN
OrthoDB:EOG4JWZP1 Uniprot:Q5BFU7
Length = 936
Score = 427 (155.4 bits), Expect = 4.5e-39, P = 4.5e-39
Identities = 136/425 (32%), Positives = 217/425 (51%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AIA+ G+ PT IQ + IP+I++++DV+ ARTGSGKT AF IPMI+K LK +
Sbjct: 103 LKAIARKGFSVPTPIQRKTIPVIMEDQDVVGMARTGSGKTAAFVIPMIEK---LKSHSTK 159
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ L+LSPS+EL Q K ++EL D+K V + + Q ++ PDIV+A
Sbjct: 160 FGARGLILSPSRELALQTLKVVKELGK--GTDLKSVLLVGGDSLEEQFGMMAGNPDIVIA 217
Query: 150 TPARALAHLKAK-TLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
TP R L HLK + LDL SS++ V+ DEAD +F G+ + +L LP Q +L SAT
Sbjct: 218 TPGRFL-HLKVEMNLDL-SSIKYVVFDEADRLFEMGFAAQLTEILHGLPSTRQTLLFSAT 275
Query: 209 LSEDVLSLKHLILRNPVILKLE-EPAIAPVSQLAHYHILAQEDEKATILYTLLK-LNLVQ 266
L + ++ L++P +++L+ E I+P Q A + + + E E A +LY L + + +
Sbjct: 276 LPKSLVEFARAGLQDPTLVRLDTESKISPDLQNAFFSVKSAEKEGA-LLYILNEVIKMPT 334
Query: 267 GKTIIFVNTVDKCYK--LKLYLEQFKISTCVLNSELPAKARC---HAVYQFNQGLYDVII 321
G T + +K + ++ ++ V E P K A LY ++
Sbjct: 335 GPTEASLRLKEKGPEDSKNKKRKRAEMERAVNMKESPTKHSTIVFAATKHHVDYLYSLLR 394
Query: 322 -ASDEKALETPQINSTNNRKRKRDKESGVS----------RGIDFQFVSNVINFDFPLDI 370
A + ++ T + + ++ +G+S RGID ++NVIN+DFP
Sbjct: 395 EAGFAVSYVYGSLDQTARKIQVQNFRTGISNILVVTDVAARGIDIPILANVINYDFPSQP 454
Query: 371 QCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTAL---SFVSLREQDLMNDVNEYLMT 427
+ ++HR GRTAR +G + S V + + D V RE D +N + +
Sbjct: 455 KIFVHRVGRTARAGRKGWSYSLVRDADAPYLLDLQLFLGRKLVLGRESDQVNFAEDVAVG 514
Query: 428 NLHED 432
+L D
Sbjct: 515 SLPRD 519
>UNIPROTKB|E1BGI6 [details] [associations]
symbol:DDX54 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030331 "estrogen receptor binding" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0003714 "transcription corepressor activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
GO:GO:0003723 GO:GO:0006396 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
OMA:FYIPYRP GeneTree:ENSGT00550000075100 EMBL:DAAA02045421
IPI:IPI00690851 Ensembl:ENSBTAT00000029525 Uniprot:E1BGI6
Length = 877
Score = 370 (135.3 bits), Expect = 4.6e-39, Sum P(2) = 4.6e-39
Identities = 109/313 (34%), Positives = 167/313 (53%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ 90
+ I K G+ PT IQ + IP+IL KDV+ ARTGSGKT F IPM ++ LK +
Sbjct: 109 KGIMKKGYKVPTPIQRKTIPMILDGKDVVAMARTGSGKTACFLIPMFER---LKTHSAQT 165
Query: 91 ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVAT 150
+AL+LSP++EL Q K +EL K + +K I + Q L E PDI++AT
Sbjct: 166 GARALILSPTRELALQTMKFTKELG-KFT-GLKTALILGGDKMEDQFAALHENPDIIIAT 223
Query: 151 PARALAHLKAKTLDLK-SSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
P R L H+ A ++LK S+E V+ DEAD +F G+ + ++ ++ LP +Q +L SATL
Sbjct: 224 PGR-LVHV-AVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIGRLPGGHQTVLFSATL 281
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLV--QG 267
+ ++ L PV+++L+ + QL L +ED KA +L LL+ N+V Q
Sbjct: 282 PKLLVEFARAGLTEPVLIRLDVDSKLN-EQLKTSFFLVREDAKAAVLLHLLR-NVVRPQD 339
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD--E 325
+T++FV T L L +S + S L AR + +F G +I +D
Sbjct: 340 QTVVFVATKHHAEYLSELLATQGVSCAHIYSALDQTARKINLARFTHGKCSALIVTDLAA 399
Query: 326 KALETPQINSTNN 338
+ L+ P +++ N
Sbjct: 400 RGLDIPLLDNVIN 412
Score = 110 (43.8 bits), Expect = 4.6e-39, Sum P(2) = 4.6e-39
Identities = 22/54 (40%), Positives = 31/54 (57%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND 403
+RG+D + NVIN+ FP + ++HR GR AR GTA S V+ E + D
Sbjct: 399 ARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEVPYLLD 452
>UNIPROTKB|Q4K8U0 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A" species:220664
"Pseudomonas protegens Pf-5" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0006950 "response to stress"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006950
GO:GO:0006355 GO:GO:0003723 EMBL:CP000076 GenomeReviews:CP000076_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
OMA:LPQGMPK RefSeq:YP_261343.1 ProteinModelPortal:Q4K8U0
GeneID:3477377 KEGG:pfl:PFL_4251 PATRIC:19877913
ProtClustDB:CLSK867560 BioCyc:PFLU220664:GIX8-4286-MONOMER
Uniprot:Q4K8U0
Length = 557
Score = 356 (130.4 bits), Expect = 6.1e-39, Sum P(2) = 6.1e-39
Identities = 95/322 (29%), Positives = 164/322 (50%)
Query: 32 AIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQE 91
A+ G+ EP+ IQ+++IP+IL D++ +A+TG+GKT AFA+P++ +I K+ E
Sbjct: 20 AVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHRIDPSKR-----E 74
Query: 92 TKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATP 151
+AL+L+P++EL Q+ E K V V + + Q + IVVATP
Sbjct: 75 PQALILAPTRELALQVATAF-ETYAKQMPGVTVVAVYGGAPMGPQLKAIRNGAQIVVATP 133
Query: 152 ARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSE 211
R HL+ L +++ +++DEAD + G+ DD++ + K +P+ Q +L SATL +
Sbjct: 134 GRLCDHLRRDEKVL-ATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQTVLFSATLPQ 192
Query: 212 DVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTII 271
+ ++ L++P +K++ V+ + H+L D+K + + +LL++ I+
Sbjct: 193 SIRAIAERHLKDPKHVKIQSKT-QTVTAIEQAHLLVHADQKTSAVLSLLEVEDFDA-LIM 250
Query: 272 FVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA--LE 329
FV T L LE LN ++ R + G D+++A+D A L+
Sbjct: 251 FVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVATDVAARGLD 310
Query: 330 TPQINSTNNRKRKRDKESGVSR 351
P+I N D ES V R
Sbjct: 311 VPRITHVFNVDMPYDPESYVHR 332
Score = 114 (45.2 bits), Expect = 6.1e-39, Sum P(2) = 6.1e-39
Identities = 21/52 (40%), Positives = 33/52 (63%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLM 401
+RG+D +++V N D P D + Y+HR GRT R +G AL V+ RE+ ++
Sbjct: 306 ARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRML 357
>TIGR_CMR|GSU_0189 [details] [associations]
symbol:GSU_0189 "ATP-dependent RNA helicase DbpA"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE017180 GenomeReviews:AE017180_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:NP_951250.1
ProteinModelPortal:Q74GQ7 GeneID:2687824 KEGG:gsu:GSU0189
PATRIC:22023124 OMA:VAIASHC BioCyc:GSUL243231:GH27-128-MONOMER
Uniprot:Q74GQ7
Length = 460
Score = 339 (124.4 bits), Expect = 8.0e-39, Sum P(2) = 8.0e-39
Identities = 93/319 (29%), Positives = 168/319 (52%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ +A LG+ E T IQ ++PLIL KDV+ RA+TGSGKT AF I ++ ++ L + +V
Sbjct: 16 LRNLASLGYAEMTPIQAHSLPLILAGKDVIARAKTGSGKTAAFGIGLLSRLDAL--SFRV 73
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
Q ALVL P++EL +Q+ K ++ L + + ++K + I V Q L +V+
Sbjct: 74 Q---ALVLCPTRELADQVGKELRRLA-RFTDNIKILTICGGVPFGPQLGSLEHGAHVVIG 129
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HL+ +LDL S+L +++DEAD + G++DD+ A++ P Q +L SAT
Sbjct: 130 TPGRLLDHLRRGSLDL-SALRTLVLDEADRMLDMGFQDDISALIAAAPPKRQTLLFSATY 188
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+ + ++ + R PV + ++E + Y + ++ + +L +
Sbjct: 189 PDSIAAMSAGVQREPVEVSVDEVHGEGAIEQVFYEV--DSGQRIEAVERILG-HYRPESA 245
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA-- 327
+IF NT +C ++ L + ++ +L + R + +F V++A+D A
Sbjct: 246 LIFCNTKLECQEVANALAVRGYAALAIHGDLDQRERDRVLVRFANRSASVLVATDVAARG 305
Query: 328 LETPQINSTNNRKRKRDKE 346
L+ ++++ N + R+ E
Sbjct: 306 LDIKELSAVINYELTRNPE 324
Score = 98 (39.6 bits), Expect = 8.0e-39, Sum P(2) = 8.0e-39
Identities = 20/52 (38%), Positives = 33/52 (63%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLM 401
+RG+D + +S VIN++ + + + HR GRT R +G A+S V+ RE L+
Sbjct: 303 ARGLDIKELSAVINYELTRNPEVHTHRIGRTGRAGERGLAVSLVTPRESRLI 354
>UNIPROTKB|F1NTK9 [details] [associations]
symbol:DDX54 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003714 "transcription corepressor
activity" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0030331 "estrogen
receptor binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003714 GO:GO:0005730 GO:GO:0003723 GO:GO:0006396
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00550000075100
EMBL:AADN02043183 IPI:IPI00582285 ProteinModelPortal:F1NTK9
Ensembl:ENSGALT00000012108 Uniprot:F1NTK9
Length = 822
Score = 365 (133.5 bits), Expect = 9.1e-39, Sum P(2) = 9.1e-39
Identities = 100/312 (32%), Positives = 168/312 (53%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ 90
+ + K G+ PT IQ + IP+IL+ +DV+ ARTGSGKT F +PM +++ +
Sbjct: 49 KGVMKKGYKVPTPIQRKTIPVILRGRDVVAMARTGSGKTACFLLPMFERL----KAPSPS 104
Query: 91 ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVAT 150
+AL+LSP++EL Q K +EL V ++++ Q L E PDI++AT
Sbjct: 105 GARALILSPTRELALQTLKFTKELGKFTGLKTALVLGGDKMED--QFAALHENPDIIIAT 162
Query: 151 PARALAHLKAKTLDLK-SSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
P R L H+ A ++LK S+E V+ DEAD +F G+ + ++ +L LP +Q +L SATL
Sbjct: 163 PGR-LVHV-AVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEILARLPGSHQTVLFSATL 220
Query: 210 SEDVLSLKHLILRNPVILKLE-EPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGK 268
+ ++ L P++++L+ E ++ +LA +H+ +D+ A +L+ L + Q +
Sbjct: 221 PKLLVEFARAGLTEPMLIRLDVESKLSEQLKLAFFHVRG-DDKPAVLLHLLRCVVKPQDQ 279
Query: 269 TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA- 327
T++FV T LK L I + S L AR + +F G V++ +D A
Sbjct: 280 TVVFVATKHHTEYLKELLTSQGICCTHIYSSLDQTARKINIAKFAHGKCQVLLVTDVAAR 339
Query: 328 -LETPQINSTNN 338
L+ P +++ N
Sbjct: 340 GLDIPMLDNVIN 351
Score = 113 (44.8 bits), Expect = 9.1e-39, Sum P(2) = 9.1e-39
Identities = 22/54 (40%), Positives = 31/54 (57%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND 403
+RG+D + NVIN+ FP + ++HR GR AR GTA S V+ E + D
Sbjct: 338 ARGLDIPMLDNVINYSFPAKSKLFLHRVGRVARAGRSGTAYSLVAPDEMPYIFD 391
>TIGR_CMR|CPS_2658 [details] [associations]
symbol:CPS_2658 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 RefSeq:YP_269372.1
ProteinModelPortal:Q480Z7 GeneID:3520428 KEGG:cps:CPS_2658
PATRIC:21468367 OMA:ERNFDSS BioCyc:CPSY167879:GI48-2720-MONOMER
Uniprot:Q480Z7
Length = 399
Score = 328 (120.5 bits), Expect = 1.2e-38, Sum P(2) = 1.2e-38
Identities = 94/321 (29%), Positives = 163/321 (50%)
Query: 37 GWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALV 96
G+ +PT IQ+ IP ++ D+L A+TG+GKT AF++P+I K K + + T++L+
Sbjct: 21 GYKQPTPIQKECIPALINGNDLLGIAQTGTGKTAAFSLPIINKFGRNKIDIKAKSTRSLI 80
Query: 97 LSPSKELCNQLHKNIQELTMKCSRDVKCV--DISEQVDVSVQEPLLVERPDIVVATPARA 154
L+P++EL +Q+ +NI + + K V + Q V E L DI+VATP R
Sbjct: 81 LTPTRELASQIMQNIDDYSDGLGLKTKVVYGGVGRQAQVDSIELGL----DILVATPGRL 136
Query: 155 LAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSEDVL 214
L ++ ++ K+ LE+ ++DEAD + G+ D+++++ LPK Q +L SAT+ ++
Sbjct: 137 LDLIETGDINFKA-LEVFVLDEADTMLDMGFFKDVQSIISKLPKSRQTLLFSATMPAEIE 195
Query: 215 SLKHLILRNPVILKL--EEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTIIF 272
L IL +P +++ E I V+Q YH+ + K +L+ +L + K +IF
Sbjct: 196 ILAEAILTDPTKIQITAETVTIDLVNQSV-YHL--DKSNKVPLLFNILTKADYE-KVLIF 251
Query: 273 VNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA--LET 330
T + LE+ I+ L+S R A+ F V++A+D A ++
Sbjct: 252 CKTKYGADIIVKALEKASITAASLHSGKTQAVREEALQNFKDSTLRVLVATDVAARGIDV 311
Query: 331 PQINSTNNRKRKRDKESGVSR 351
I N D + + R
Sbjct: 312 DNITLVINYNLPEDPRNYIHR 332
Score = 109 (43.4 bits), Expect = 1.2e-38, Sum P(2) = 1.2e-38
Identities = 22/43 (51%), Positives = 29/43 (67%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSF 392
+RGID ++ VIN++ P D + YIHR GRTAR G A+SF
Sbjct: 306 ARGIDVDNITLVINYNLPEDPRNYIHRIGRTARAGKSGMAISF 348
>UNIPROTKB|Q9KMW4 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 334 (122.6 bits), Expect = 1.2e-38, Sum P(2) = 1.2e-38
Identities = 89/324 (27%), Positives = 164/324 (50%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AI + G+ P+ IQ +AIP +L KDV+ A+TG+GKT F +P+++ ++ +
Sbjct: 13 LKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE-LLAKGPKVRA 71
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ +AL+L+P++EL Q+ N+ + +K + V ++ Q + + DI+VA
Sbjct: 72 NQVRALILTPTRELAAQIQDNV--MLYGRHLPLKSAVVFGGVKINPQMQRMCKGADILVA 129
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + + LEI+++DEAD + G+ D+ +LK LP+ Q +L SAT
Sbjct: 130 TPGRLMDLYNQNAVKF-DQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQNLLFSATF 188
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
S ++ L ++ NPV + + PA + + A +K +L L+K Q +
Sbjct: 189 STEIRELAKGLVNNPVEISVS-PANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQ-QV 246
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD--EKA 327
++F+ T +L YL + ++ ++ AR A+ F G +++A+D +
Sbjct: 247 LVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARG 306
Query: 328 LETPQINSTNNRKRKRDKESGVSR 351
++ PQ+ N + + E V R
Sbjct: 307 IDIPQLPQVVNFELPKIAEDYVHR 330
Score = 102 (41.0 bits), Expect = 1.2e-38, Sum P(2) = 1.2e-38
Identities = 21/48 (43%), Positives = 28/48 (58%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLRE 397
+RGID + V+NF+ P + Y+HR GRT R G A+S VS E
Sbjct: 304 ARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIE 351
>TIGR_CMR|VC_A0204 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 334 (122.6 bits), Expect = 1.2e-38, Sum P(2) = 1.2e-38
Identities = 89/324 (27%), Positives = 164/324 (50%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AI + G+ P+ IQ +AIP +L KDV+ A+TG+GKT F +P+++ ++ +
Sbjct: 13 LKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE-LLAKGPKVRA 71
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ +AL+L+P++EL Q+ N+ + +K + V ++ Q + + DI+VA
Sbjct: 72 NQVRALILTPTRELAAQIQDNV--MLYGRHLPLKSAVVFGGVKINPQMQRMCKGADILVA 129
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + + LEI+++DEAD + G+ D+ +LK LP+ Q +L SAT
Sbjct: 130 TPGRLMDLYNQNAVKF-DQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQNLLFSATF 188
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
S ++ L ++ NPV + + PA + + A +K +L L+K Q +
Sbjct: 189 STEIRELAKGLVNNPVEISVS-PANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQ-QV 246
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD--EKA 327
++F+ T +L YL + ++ ++ AR A+ F G +++A+D +
Sbjct: 247 LVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARG 306
Query: 328 LETPQINSTNNRKRKRDKESGVSR 351
++ PQ+ N + + E V R
Sbjct: 307 IDIPQLPQVVNFELPKIAEDYVHR 330
Score = 102 (41.0 bits), Expect = 1.2e-38, Sum P(2) = 1.2e-38
Identities = 21/48 (43%), Positives = 28/48 (58%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLRE 397
+RGID + V+NF+ P + Y+HR GRT R G A+S VS E
Sbjct: 304 ARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIE 351
>UNIPROTKB|Q48PB7 [details] [associations]
symbol:PSPPH_0449 "ATP-dependent RNA helicase RhlE,
putative" species:264730 "Pseudomonas syringae pv. phaseolicola
1448A" [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000058 GenomeReviews:CP000058_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_272752.1 ProteinModelPortal:Q48PB7 GeneID:3558820
KEGG:psp:PSPPH_0449 PATRIC:19969930 OMA:DGDLMGF
ProtClustDB:CLSK865855 Uniprot:Q48PB7
Length = 625
Score = 359 (131.4 bits), Expect = 1.4e-38, Sum P(2) = 1.4e-38
Identities = 97/331 (29%), Positives = 175/331 (52%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII-----NLK 84
++AI G+ +PT +Q+RAIP +LQ +D++V A+TG+GKTG FA+P+++++ +
Sbjct: 13 VRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGVPDKS 72
Query: 85 QTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVD--ISEQVDVSVQEPLLVE 142
Q ++ + LVL+P++EL Q+H++ + +RD+K V I V ++ Q +
Sbjct: 73 QRHGPRQPRVLVLTPTRELAAQVHESFKLY----ARDLKFVSACIFGGVGMNPQVQAMSR 128
Query: 143 RPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQA 202
D++VA P R L ++DL S +EI+++DEAD + G+ D+K VL LP Q
Sbjct: 129 GVDVLVACPGRLLDLAGQGSVDL-SHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQN 187
Query: 203 ILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKL 262
+L SAT S D+ SL +L NP +++ P V ++ + K ++L L+ +
Sbjct: 188 LLFSATFSNDITSLAGKLLHNPERIEVTPPNTT-VERIEQRVFRLAANHKRSLLAHLITV 246
Query: 263 NLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIA 322
+ + ++F T +L YL++ ++ ++ AR A+ F G +++A
Sbjct: 247 GAWE-QVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVA 305
Query: 323 SD--EKALETPQINSTNNRKRKRDKESGVSR 351
+D + L+ Q+ N + E V R
Sbjct: 306 TDIAARGLDIDQLPHVVNFELPNVDEDYVHR 336
Score = 112 (44.5 bits), Expect = 1.4e-38, Sum P(2) = 1.4e-38
Identities = 23/69 (33%), Positives = 39/69 (56%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSF 409
+RG+D + +V+NF+ P + Y+HR GRT R G A+S V+ E+ L+ ++
Sbjct: 310 ARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERMTK 369
Query: 410 VSLREQDLM 418
+ + DLM
Sbjct: 370 QKIADGDLM 378
>UNIPROTKB|Q81QF0 [details] [associations]
symbol:BAS2301 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 326 (119.8 bits), Expect = 2.7e-38, Sum P(2) = 2.7e-38
Identities = 94/317 (29%), Positives = 165/317 (52%)
Query: 37 GWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALV 96
G E T IQE+AIP+IL KD++ +A+TG+GKT AF +P+++KI +++ VQ AL+
Sbjct: 24 GITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKID--PESSDVQ---ALI 78
Query: 97 LSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALA 156
++P++EL Q+ I+++ ++ D+ + I DV+ Q L IVVATP R L
Sbjct: 79 VAPTRELALQITTEIKKMLVQ-REDINVLAIYGGQDVAQQLRKLKGNTHIVVATPGRLLD 137
Query: 157 HLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSL 216
H++ +T+DL S+L +++DEAD + FG+ D++ +L P Q +L SAT+ +D+ L
Sbjct: 138 HIRRETIDL-SNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLFSATIPKDIKKL 196
Query: 217 KHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTIIFVNTV 276
+ P +++++ + V + I + K L ++ + +IF T
Sbjct: 197 AKRYMDEPQMIQVQSEEVT-VDTIEQRVIETTDRAKPDALRFVMDRDQ-PFLAVIFCRTK 254
Query: 277 DKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA--LETPQIN 334
+ KL L+ + L+ ++P R + F + +IA+D A L+ +
Sbjct: 255 VRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVT 314
Query: 335 STNNRKRKRDKESGVSR 351
N D ES + R
Sbjct: 315 HVFNYDIPEDVESYIHR 331
Score = 125 (49.1 bits), Expect = 2.7e-38, Sum P(2) = 2.7e-38
Identities = 21/49 (42%), Positives = 34/49 (69%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQ 398
+RG+D V++V N+D P D++ YIHR GRT R G A++FV+ +++
Sbjct: 305 ARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDE 353
Score = 37 (18.1 bits), Expect = 4.5e-29, Sum P(2) = 4.5e-29
Identities = 9/42 (21%), Positives = 23/42 (54%)
Query: 404 GTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDE 445
G A++FV+ +++ + ++ + L + + I +P +DE
Sbjct: 342 GLAITFVAAKDEKHLEEIEKTLGAPIQRE-IIEQPKIKRVDE 382
>TIGR_CMR|BA_2475 [details] [associations]
symbol:BA_2475 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 326 (119.8 bits), Expect = 2.7e-38, Sum P(2) = 2.7e-38
Identities = 94/317 (29%), Positives = 165/317 (52%)
Query: 37 GWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALV 96
G E T IQE+AIP+IL KD++ +A+TG+GKT AF +P+++KI +++ VQ AL+
Sbjct: 24 GITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKID--PESSDVQ---ALI 78
Query: 97 LSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALA 156
++P++EL Q+ I+++ ++ D+ + I DV+ Q L IVVATP R L
Sbjct: 79 VAPTRELALQITTEIKKMLVQ-REDINVLAIYGGQDVAQQLRKLKGNTHIVVATPGRLLD 137
Query: 157 HLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSL 216
H++ +T+DL S+L +++DEAD + FG+ D++ +L P Q +L SAT+ +D+ L
Sbjct: 138 HIRRETIDL-SNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLFSATIPKDIKKL 196
Query: 217 KHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTIIFVNTV 276
+ P +++++ + V + I + K L ++ + +IF T
Sbjct: 197 AKRYMDEPQMIQVQSEEVT-VDTIEQRVIETTDRAKPDALRFVMDRDQ-PFLAVIFCRTK 254
Query: 277 DKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA--LETPQIN 334
+ KL L+ + L+ ++P R + F + +IA+D A L+ +
Sbjct: 255 VRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVT 314
Query: 335 STNNRKRKRDKESGVSR 351
N D ES + R
Sbjct: 315 HVFNYDIPEDVESYIHR 331
Score = 125 (49.1 bits), Expect = 2.7e-38, Sum P(2) = 2.7e-38
Identities = 21/49 (42%), Positives = 34/49 (69%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQ 398
+RG+D V++V N+D P D++ YIHR GRT R G A++FV+ +++
Sbjct: 305 ARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDE 353
Score = 37 (18.1 bits), Expect = 4.5e-29, Sum P(2) = 4.5e-29
Identities = 9/42 (21%), Positives = 23/42 (54%)
Query: 404 GTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDE 445
G A++FV+ +++ + ++ + L + + I +P +DE
Sbjct: 342 GLAITFVAAKDEKHLEEIEKTLGAPIQRE-IIEQPKIKRVDE 382
>FB|FBgn0052344 [details] [associations]
symbol:CG32344 species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:AE014296
GO:GO:0022008 GO:GO:0006200 GO:GO:0003723 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14808
GeneTree:ENSGT00550000075100 HSSP:P10081 EMBL:AY075397
RefSeq:NP_612028.4 UniGene:Dm.796 SMR:Q8SY39 IntAct:Q8SY39
STRING:Q8SY39 EnsemblMetazoa:FBtr0072576 GeneID:326208
KEGG:dme:Dmel_CG32344 UCSC:CG32344-RA FlyBase:FBgn0052344
InParanoid:Q8SY39 OMA:NANDEMS OrthoDB:EOG40CFZ4 GenomeRNAi:326208
NextBio:847633 Uniprot:Q8SY39
Length = 827
Score = 374 (136.7 bits), Expect = 3.1e-38, Sum P(2) = 3.1e-38
Identities = 102/313 (32%), Positives = 167/313 (53%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++ I K G+ PT IQ + IPLIL+ +DV+ A+TGSGKT F IP+ +K L++
Sbjct: 51 IKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEK---LQRREPT 107
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ +AL+LSP++EL Q +K I+EL ++K + + + Q + PD++VA
Sbjct: 108 KGARALILSPTRELAVQTYKFIKELGR--FMELKSILVLGGDSMDSQFSAIHTCPDVIVA 165
Query: 150 TPARALAHLKAKTLDLK-SSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
TP R L HL + +DLK +S+E V+ DEAD +F G+ + + L LP Q ++ SAT
Sbjct: 166 TPGRFL-HLCVE-MDLKLNSIEYVVFDEADRLFEMGFGEQLNETLHRLPSSRQTVMFSAT 223
Query: 209 LSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNL-VQG 267
L + ++ L +PV+++L+ + P LA + + D++ T L LLK + VQ
Sbjct: 224 LPKLLVEFARAGLNDPVLIRLDVESKLP-DALALKFLYCRPDDRYTALVVLLKYVIPVQS 282
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
+T++F T + L + IS + S L AR +F V+I +D A
Sbjct: 283 QTVVFAGTQHHVELISYILTEAGISNASVYSSLDPAARKINTAKFVNKKVSVLIVTDVAA 342
Query: 328 --LETPQINSTNN 338
++ P ++ N
Sbjct: 343 RGIDIPSLDFVVN 355
Score = 95 (38.5 bits), Expect = 3.1e-38, Sum P(2) = 3.1e-38
Identities = 20/45 (44%), Positives = 26/45 (57%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVS 394
+RGID + V+N FP + ++HR GR AR GTA S VS
Sbjct: 342 ARGIDIPSLDFVVNLHFPGKPKLFVHRVGRCARAGRTGTAYSIVS 386
>UNIPROTKB|Q3SZ54 [details] [associations]
symbol:EIF4A1 "Eukaryotic initiation factor 4A-I"
species:9913 "Bos taurus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 GeneTree:ENSGT00530000062880 EMBL:BC103130
IPI:IPI00698793 RefSeq:NP_001029400.1 UniGene:Bt.14169
ProteinModelPortal:Q3SZ54 SMR:Q3SZ54 STRING:Q3SZ54 PRIDE:Q3SZ54
Ensembl:ENSBTAT00000000144 GeneID:504958 KEGG:bta:504958 CTD:1973
InParanoid:Q3SZ54 KO:K03257 OMA:IKMFILD OrthoDB:EOG4640C1
NextBio:20866906 Uniprot:Q3SZ54
Length = 406
Score = 319 (117.4 bits), Expect = 3.2e-38, Sum P(2) = 3.2e-38
Identities = 99/331 (29%), Positives = 175/331 (52%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKI-INLKQTAQ 88
L+ I G+ +P+ IQ+RAI ++ DV+ +A++G+GKT FAI ++Q+I ++LK T
Sbjct: 44 LRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKAT-- 101
Query: 89 VQETKALVLSPSKELCNQLHKNIQELT--MKCSRDVKCVDISEQVDVSVQEPLLVERPDI 146
+ALVL+P++EL Q+ K + L M S C+ V VQ+ L +E P I
Sbjct: 102 ----QALVLAPTRELAQQIQKVVMALGDYMGASCHA-CIG-GTNVRAEVQK-LQMEAPHI 154
Query: 147 VVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
+V TP R L + L K +++ ++DEAD + S G++D + + + L Q +L S
Sbjct: 155 IVGTPGRVFDMLNRRYLSPKY-IKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLS 213
Query: 207 ATLSEDVLSLKHLILRNPV--ILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNL 264
AT+ DVL + +R+P+ ++K EE + + Q Y + +E+ K L L + L
Sbjct: 214 ATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQF--YINVEREEWKLDTLCDLYE-TL 270
Query: 265 VQGKTIIFVNTVDKCYKL--KLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIA 322
+ +IF+NT K L K++ F +S ++ ++ K R + +F G V+I
Sbjct: 271 TITQAVIFINTRRKVDWLTEKMHARDFTVSA--MHGDMDQKERDVIMREFRSGSSRVLIT 328
Query: 323 SD--EKALETPQINSTNNRKRKRDKESGVSR 351
+D + ++ Q++ N ++E+ + R
Sbjct: 329 TDLLARGIDVQQVSLVINYDLPTNRENYIHR 359
Score = 115 (45.5 bits), Expect = 3.2e-38, Sum P(2) = 3.2e-38
Identities = 26/69 (37%), Positives = 39/69 (56%)
Query: 349 VSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALS 408
++RGID Q VS VIN+D P + + YIHR GR R +G A++ V+ ++ + D
Sbjct: 332 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFY 391
Query: 409 FVSLREQDL 417
S+ E L
Sbjct: 392 NTSIEEMPL 400
>UNIPROTKB|F1P895 [details] [associations]
symbol:EIF4A1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 OMA:PILEMED EMBL:AAEX03003619
EMBL:AAEX03003621 EMBL:AAEX03003620 Ensembl:ENSCAFT00000026357
Uniprot:F1P895
Length = 406
Score = 319 (117.4 bits), Expect = 3.2e-38, Sum P(2) = 3.2e-38
Identities = 99/331 (29%), Positives = 175/331 (52%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKI-INLKQTAQ 88
L+ I G+ +P+ IQ+RAI ++ DV+ +A++G+GKT FAI ++Q+I ++LK T
Sbjct: 44 LRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKAT-- 101
Query: 89 VQETKALVLSPSKELCNQLHKNIQELT--MKCSRDVKCVDISEQVDVSVQEPLLVERPDI 146
+ALVL+P++EL Q+ K + L M S C+ V VQ+ L +E P I
Sbjct: 102 ----QALVLAPTRELAQQIQKVVMALGDYMGASCHA-CIG-GTNVRAEVQK-LQMEAPHI 154
Query: 147 VVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
+V TP R L + L K +++ ++DEAD + S G++D + + + L Q +L S
Sbjct: 155 IVGTPGRVFDMLNRRYLSPKY-IKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLS 213
Query: 207 ATLSEDVLSLKHLILRNPV--ILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNL 264
AT+ DVL + +R+P+ ++K EE + + Q Y + +E+ K L L + L
Sbjct: 214 ATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQF--YINVEREEWKLDTLCDLYE-TL 270
Query: 265 VQGKTIIFVNTVDKCYKL--KLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIA 322
+ +IF+NT K L K++ F +S ++ ++ K R + +F G V+I
Sbjct: 271 TITQAVIFINTRRKVDWLTEKMHARDFTVSA--MHGDMDQKERDVIMREFRSGSSRVLIT 328
Query: 323 SD--EKALETPQINSTNNRKRKRDKESGVSR 351
+D + ++ Q++ N ++E+ + R
Sbjct: 329 TDLLARGIDVQQVSLVINYDLPTNRENYIHR 359
Score = 115 (45.5 bits), Expect = 3.2e-38, Sum P(2) = 3.2e-38
Identities = 26/69 (37%), Positives = 39/69 (56%)
Query: 349 VSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALS 408
++RGID Q VS VIN+D P + + YIHR GR R +G A++ V+ ++ + D
Sbjct: 332 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFY 391
Query: 409 FVSLREQDL 417
S+ E L
Sbjct: 392 NTSIEEMPL 400
>UNIPROTKB|J9NY67 [details] [associations]
symbol:EIF4A1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 CTD:1973 KO:K03257 OMA:IKMFILD
EMBL:AAEX03006506 EMBL:AAEX03006505 RefSeq:NP_001238871.1
ProteinModelPortal:J9NY67 Ensembl:ENSCAFT00000014379
GeneID:100688577 KEGG:cfa:100688577 Uniprot:J9NY67
Length = 406
Score = 319 (117.4 bits), Expect = 3.2e-38, Sum P(2) = 3.2e-38
Identities = 99/331 (29%), Positives = 175/331 (52%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKI-INLKQTAQ 88
L+ I G+ +P+ IQ+RAI ++ DV+ +A++G+GKT FAI ++Q+I ++LK T
Sbjct: 44 LRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKAT-- 101
Query: 89 VQETKALVLSPSKELCNQLHKNIQELT--MKCSRDVKCVDISEQVDVSVQEPLLVERPDI 146
+ALVL+P++EL Q+ K + L M S C+ V VQ+ L +E P I
Sbjct: 102 ----QALVLAPTRELAQQIQKVVMALGDYMGASCHA-CIG-GTNVRAEVQK-LQMEAPHI 154
Query: 147 VVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
+V TP R L + L K +++ ++DEAD + S G++D + + + L Q +L S
Sbjct: 155 IVGTPGRVFDMLNRRYLSPKY-IKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLS 213
Query: 207 ATLSEDVLSLKHLILRNPV--ILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNL 264
AT+ DVL + +R+P+ ++K EE + + Q Y + +E+ K L L + L
Sbjct: 214 ATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQF--YINVEREEWKLDTLCDLYE-TL 270
Query: 265 VQGKTIIFVNTVDKCYKL--KLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIA 322
+ +IF+NT K L K++ F +S ++ ++ K R + +F G V+I
Sbjct: 271 TITQAVIFINTRRKVDWLTEKMHARDFTVSA--MHGDMDQKERDVIMREFRSGSSRVLIT 328
Query: 323 SD--EKALETPQINSTNNRKRKRDKESGVSR 351
+D + ++ Q++ N ++E+ + R
Sbjct: 329 TDLLARGIDVQQVSLVINYDLPTNRENYIHR 359
Score = 115 (45.5 bits), Expect = 3.2e-38, Sum P(2) = 3.2e-38
Identities = 26/69 (37%), Positives = 39/69 (56%)
Query: 349 VSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALS 408
++RGID Q VS VIN+D P + + YIHR GR R +G A++ V+ ++ + D
Sbjct: 332 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFY 391
Query: 409 FVSLREQDL 417
S+ E L
Sbjct: 392 NTSIEEMPL 400
>UNIPROTKB|P60842 [details] [associations]
symbol:EIF4A1 "Eukaryotic initiation factor 4A-I"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0004386 "helicase activity"
evidence=TAS] [GO:0000339 "RNA cap binding" evidence=TAS]
[GO:0008135 "translation factor activity, nucleic acid binding"
evidence=TAS] [GO:0016281 "eukaryotic translation initiation factor
4F complex" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000288 "nuclear-transcribed mRNA catabolic
process, deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0019221 "cytokine-mediated signaling
pathway" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
Reactome:REACT_6900 EMBL:CH471108 GO:GO:0019048
Pathway_Interaction_DB:mtor_4pathway GO:GO:0006413 GO:GO:0016281
GO:GO:0031100 GO:GO:0003729 GO:GO:0019221 GO:GO:0008135
GO:GO:0004386 GO:GO:0003743 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000289 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 Reactome:REACT_1762 CTD:1973 KO:K03257
OMA:IKMFILD OrthoDB:EOG4640C1 EMBL:D13748 EMBL:BT019880
EMBL:BT019881 EMBL:AK312630 EMBL:AC016876 EMBL:BC006210
EMBL:BC009585 EMBL:BC073752 IPI:IPI00025491 PIR:S33681
RefSeq:NP_001191439.1 RefSeq:NP_001407.1 UniGene:Hs.129673 PDB:2G9N
PDB:2ZU6 PDB:3EIQ PDBsum:2G9N PDBsum:2ZU6 PDBsum:3EIQ
ProteinModelPortal:P60842 SMR:P60842 DIP:DIP-29755N IntAct:P60842
MINT:MINT-5001111 STRING:P60842 PhosphoSite:P60842 DMDM:46397463
PaxDb:P60842 PRIDE:P60842 DNASU:1973 Ensembl:ENST00000293831
Ensembl:ENST00000577269 GeneID:1973 KEGG:hsa:1973 UCSC:uc002gho.2
GeneCards:GC17P007476 HGNC:HGNC:3282 HPA:CAB011689 MIM:602641
neXtProt:NX_P60842 PharmGKB:PA27710 PhylomeDB:P60842 ChiTaRS:EIF4A1
EvolutionaryTrace:P60842 GenomeRNAi:1973 NextBio:7987
ArrayExpress:P60842 Bgee:P60842 CleanEx:HS_EIF4A1
Genevestigator:P60842 GermOnline:ENSG00000161960 GO:GO:0000339
Uniprot:P60842
Length = 406
Score = 319 (117.4 bits), Expect = 3.2e-38, Sum P(2) = 3.2e-38
Identities = 99/331 (29%), Positives = 175/331 (52%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKI-INLKQTAQ 88
L+ I G+ +P+ IQ+RAI ++ DV+ +A++G+GKT FAI ++Q+I ++LK T
Sbjct: 44 LRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKAT-- 101
Query: 89 VQETKALVLSPSKELCNQLHKNIQELT--MKCSRDVKCVDISEQVDVSVQEPLLVERPDI 146
+ALVL+P++EL Q+ K + L M S C+ V VQ+ L +E P I
Sbjct: 102 ----QALVLAPTRELAQQIQKVVMALGDYMGASCHA-CIG-GTNVRAEVQK-LQMEAPHI 154
Query: 147 VVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
+V TP R L + L K +++ ++DEAD + S G++D + + + L Q +L S
Sbjct: 155 IVGTPGRVFDMLNRRYLSPKY-IKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLS 213
Query: 207 ATLSEDVLSLKHLILRNPV--ILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNL 264
AT+ DVL + +R+P+ ++K EE + + Q Y + +E+ K L L + L
Sbjct: 214 ATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQF--YINVEREEWKLDTLCDLYE-TL 270
Query: 265 VQGKTIIFVNTVDKCYKL--KLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIA 322
+ +IF+NT K L K++ F +S ++ ++ K R + +F G V+I
Sbjct: 271 TITQAVIFINTRRKVDWLTEKMHARDFTVSA--MHGDMDQKERDVIMREFRSGSSRVLIT 328
Query: 323 SD--EKALETPQINSTNNRKRKRDKESGVSR 351
+D + ++ Q++ N ++E+ + R
Sbjct: 329 TDLLARGIDVQQVSLVINYDLPTNRENYIHR 359
Score = 115 (45.5 bits), Expect = 3.2e-38, Sum P(2) = 3.2e-38
Identities = 26/69 (37%), Positives = 39/69 (56%)
Query: 349 VSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALS 408
++RGID Q VS VIN+D P + + YIHR GR R +G A++ V+ ++ + D
Sbjct: 332 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFY 391
Query: 409 FVSLREQDL 417
S+ E L
Sbjct: 392 NTSIEEMPL 400
>UNIPROTKB|A6M928 [details] [associations]
symbol:EIF4A1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 CTD:1973 KO:K03257 OMA:IKMFILD
OrthoDB:EOG4640C1 EMBL:CU914279 EMBL:DQ351283 RefSeq:NP_001093666.1
UniGene:Ssc.22034 ProteinModelPortal:A6M928 SMR:A6M928 PRIDE:A6M928
Ensembl:ENSSSCT00000019541 GeneID:100101929 KEGG:ssc:100101929
Uniprot:A6M928
Length = 406
Score = 319 (117.4 bits), Expect = 3.2e-38, Sum P(2) = 3.2e-38
Identities = 99/331 (29%), Positives = 175/331 (52%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKI-INLKQTAQ 88
L+ I G+ +P+ IQ+RAI ++ DV+ +A++G+GKT FAI ++Q+I ++LK T
Sbjct: 44 LRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKAT-- 101
Query: 89 VQETKALVLSPSKELCNQLHKNIQELT--MKCSRDVKCVDISEQVDVSVQEPLLVERPDI 146
+ALVL+P++EL Q+ K + L M S C+ V VQ+ L +E P I
Sbjct: 102 ----QALVLAPTRELAQQIQKVVMALGDYMGASCHA-CIG-GTNVRAEVQK-LQMEAPHI 154
Query: 147 VVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
+V TP R L + L K +++ ++DEAD + S G++D + + + L Q +L S
Sbjct: 155 IVGTPGRVFDMLNRRYLSPKY-IKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLS 213
Query: 207 ATLSEDVLSLKHLILRNPV--ILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNL 264
AT+ DVL + +R+P+ ++K EE + + Q Y + +E+ K L L + L
Sbjct: 214 ATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQF--YINVEREEWKLDTLCDLYE-TL 270
Query: 265 VQGKTIIFVNTVDKCYKL--KLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIA 322
+ +IF+NT K L K++ F +S ++ ++ K R + +F G V+I
Sbjct: 271 TITQAVIFINTRRKVDWLTEKMHARDFTVSA--MHGDMDQKERDVIMREFRSGSSRVLIT 328
Query: 323 SD--EKALETPQINSTNNRKRKRDKESGVSR 351
+D + ++ Q++ N ++E+ + R
Sbjct: 329 TDLLARGIDVQQVSLVINYDLPTNRENYIHR 359
Score = 115 (45.5 bits), Expect = 3.2e-38, Sum P(2) = 3.2e-38
Identities = 26/69 (37%), Positives = 39/69 (56%)
Query: 349 VSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALS 408
++RGID Q VS VIN+D P + + YIHR GR R +G A++ V+ ++ + D
Sbjct: 332 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFY 391
Query: 409 FVSLREQDL 417
S+ E L
Sbjct: 392 NTSIEEMPL 400
>MGI|MGI:95303 [details] [associations]
symbol:Eif4a1 "eukaryotic translation initiation factor 4A1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0006413 "translational
initiation" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:95303 GO:GO:0005524
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989 CTD:1973
KO:K03257 OMA:IKMFILD OrthoDB:EOG4640C1 EMBL:X03039 EMBL:X03040
EMBL:L36611 EMBL:M22873 EMBL:L36608 EMBL:L36609 EMBL:L36610
EMBL:AB011595 EMBL:AK077429 EMBL:BC049915 IPI:IPI00118676
PIR:JS0039 RefSeq:NP_659207.1 UniGene:Mm.279821 UniGene:Mm.371557
UniGene:Mm.473799 ProteinModelPortal:P60843 SMR:P60843
MINT:MINT-202155 STRING:P60843 PhosphoSite:P60843
REPRODUCTION-2DPAGE:P60843 PaxDb:P60843 PRIDE:P60843
Ensembl:ENSMUST00000163666 GeneID:13681 KEGG:mmu:13681
InParanoid:P60843 NextBio:284438 Bgee:P60843 CleanEx:MM_EIF4A1
Genevestigator:P60843 GermOnline:ENSMUSG00000064241 Uniprot:P60843
Length = 406
Score = 319 (117.4 bits), Expect = 3.2e-38, Sum P(2) = 3.2e-38
Identities = 99/331 (29%), Positives = 175/331 (52%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKI-INLKQTAQ 88
L+ I G+ +P+ IQ+RAI ++ DV+ +A++G+GKT FAI ++Q+I ++LK T
Sbjct: 44 LRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKAT-- 101
Query: 89 VQETKALVLSPSKELCNQLHKNIQELT--MKCSRDVKCVDISEQVDVSVQEPLLVERPDI 146
+ALVL+P++EL Q+ K + L M S C+ V VQ+ L +E P I
Sbjct: 102 ----QALVLAPTRELAQQIQKVVMALGDYMGASCHA-CIG-GTNVRAEVQK-LQMEAPHI 154
Query: 147 VVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
+V TP R L + L K +++ ++DEAD + S G++D + + + L Q +L S
Sbjct: 155 IVGTPGRVFDMLNRRYLSPKY-IKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLS 213
Query: 207 ATLSEDVLSLKHLILRNPV--ILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNL 264
AT+ DVL + +R+P+ ++K EE + + Q Y + +E+ K L L + L
Sbjct: 214 ATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQF--YINVEREEWKLDTLCDLYE-TL 270
Query: 265 VQGKTIIFVNTVDKCYKL--KLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIA 322
+ +IF+NT K L K++ F +S ++ ++ K R + +F G V+I
Sbjct: 271 TITQAVIFINTRRKVDWLTEKMHARDFTVSA--MHGDMDQKERDVIMREFRSGSSRVLIT 328
Query: 323 SD--EKALETPQINSTNNRKRKRDKESGVSR 351
+D + ++ Q++ N ++E+ + R
Sbjct: 329 TDLLARGIDVQQVSLVINYDLPTNRENYIHR 359
Score = 115 (45.5 bits), Expect = 3.2e-38, Sum P(2) = 3.2e-38
Identities = 26/69 (37%), Positives = 39/69 (56%)
Query: 349 VSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALS 408
++RGID Q VS VIN+D P + + YIHR GR R +G A++ V+ ++ + D
Sbjct: 332 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFY 391
Query: 409 FVSLREQDL 417
S+ E L
Sbjct: 392 NTSIEEMPL 400
>UNIPROTKB|Q6P3V8 [details] [associations]
symbol:Eif4a1 "Protein Eif4a1" species:10116 "Rattus
norvegicus" [GO:0003743 "translation initiation factor activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:735141
GO:GO:0005524 GO:GO:0003743 EMBL:CH473948 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 CTD:1973 KO:K03257 OMA:IKMFILD
OrthoDB:EOG4640C1 EMBL:BC063812 IPI:IPI00369618 RefSeq:NP_955404.1
UniGene:Rn.91523 SMR:Q6P3V8 STRING:Q6P3V8
Ensembl:ENSRNOT00000049048 GeneID:287436 KEGG:rno:287436
InParanoid:Q6P3V8 NextBio:626135 Genevestigator:Q6P3V8
Uniprot:Q6P3V8
Length = 406
Score = 319 (117.4 bits), Expect = 3.2e-38, Sum P(2) = 3.2e-38
Identities = 99/331 (29%), Positives = 175/331 (52%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKI-INLKQTAQ 88
L+ I G+ +P+ IQ+RAI ++ DV+ +A++G+GKT FAI ++Q+I ++LK T
Sbjct: 44 LRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKAT-- 101
Query: 89 VQETKALVLSPSKELCNQLHKNIQELT--MKCSRDVKCVDISEQVDVSVQEPLLVERPDI 146
+ALVL+P++EL Q+ K + L M S C+ V VQ+ L +E P I
Sbjct: 102 ----QALVLAPTRELAQQIQKVVMALGDYMGASCHA-CIG-GTNVRAEVQK-LQMEAPHI 154
Query: 147 VVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
+V TP R L + L K +++ ++DEAD + S G++D + + + L Q +L S
Sbjct: 155 IVGTPGRVFDMLNRRYLSPKY-IKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLS 213
Query: 207 ATLSEDVLSLKHLILRNPV--ILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNL 264
AT+ DVL + +R+P+ ++K EE + + Q Y + +E+ K L L + L
Sbjct: 214 ATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQF--YINVEREEWKLDTLCDLYE-TL 270
Query: 265 VQGKTIIFVNTVDKCYKL--KLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIA 322
+ +IF+NT K L K++ F +S ++ ++ K R + +F G V+I
Sbjct: 271 TITQAVIFINTRRKVDWLTEKMHARDFTVSA--MHGDMDQKERDVIMREFRSGSSRVLIT 328
Query: 323 SD--EKALETPQINSTNNRKRKRDKESGVSR 351
+D + ++ Q++ N ++E+ + R
Sbjct: 329 TDLLARGIDVQQVSLVINYDLPTNRENYIHR 359
Score = 115 (45.5 bits), Expect = 3.2e-38, Sum P(2) = 3.2e-38
Identities = 26/69 (37%), Positives = 39/69 (56%)
Query: 349 VSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALS 408
++RGID Q VS VIN+D P + + YIHR GR R +G A++ V+ ++ + D
Sbjct: 332 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFY 391
Query: 409 FVSLREQDL 417
S+ E L
Sbjct: 392 NTSIEEMPL 400
>UNIPROTKB|F1NQV5 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:AADN02019007 IPI:IPI00579774
Ensembl:ENSGALT00000039062 ArrayExpress:F1NQV5 Uniprot:F1NQV5
Length = 758
Score = 359 (131.4 bits), Expect = 3.2e-38, Sum P(2) = 3.2e-38
Identities = 94/301 (31%), Positives = 161/301 (53%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AI LG+ +PT IQ+ IP+ L KD+ A TG+GKT AF +P+++++I + A +
Sbjct: 192 LKAITALGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFILPVLERLIYKPRQAPI 251
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T+ LVL P++EL Q+H ++L + S C+ + +DV QE L PDI++A
Sbjct: 252 --TRVLVLVPTRELGIQVHSVTKQLA-QFSSVTTCLAVGG-LDVKTQEAALRSGPDILIA 307
Query: 150 TPARALAHL-KAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
TP R + HL + L SS+E++I+DEAD + +E+ MK +++ + Q +L SAT
Sbjct: 308 TPGRLIDHLHNCPSFHL-SSVEVLILDEADRMLDEYFEEQMKEIIRLCSRHRQTMLFSAT 366
Query: 209 LSEDVLSLKHLILRNPV-ILKLEEPAIAPVSQLAHYHILA-QEDEKATILYTLLKLNLVQ 266
++E+V L + L+NP I +AP + I +E ++ I+ LL
Sbjct: 367 MTEEVKDLASVSLKNPTRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVSALLTRTFPD 426
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
++F T + +++ + L + L+ L R A+ +F D+++A+D
Sbjct: 427 -HVMLFTQTKKQAHRMHILLGLMGLRVGELHGNLSQAQRLEALRRFKDEQIDILVATDVA 485
Query: 327 A 327
A
Sbjct: 486 A 486
Score = 114 (45.2 bits), Expect = 3.2e-38, Sum P(2) = 3.2e-38
Identities = 30/91 (32%), Positives = 48/91 (52%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND--GTAL 407
+RG+D + V VINF P + Y+HR GRTAR G ++S V E+ ++ + A
Sbjct: 486 ARGLDIEGVKTVINFTMPNTTKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKAAK 545
Query: 408 SFVSLR--EQDLMNDVNEYLMTNLHEDDFII 436
+ V R QD++ E + NL +D + +
Sbjct: 546 TPVKARILPQDVILKFREKI-ENLEKDVYAV 575
>UNIPROTKB|Q4K4H4 [details] [associations]
symbol:rhlE_2 "Putative ATP-dependent RNA helicase"
species:220664 "Pseudomonas protegens Pf-5" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006139 GO:GO:0003676
EMBL:CP000076 GenomeReviews:CP000076_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:DGDLMGF ProtClustDB:CLSK865855 RefSeq:YP_262859.1
ProteinModelPortal:Q4K4H4 GeneID:3480173 KEGG:pfl:PFL_5801
PATRIC:19881109 BioCyc:PFLU220664:GIX8-5841-MONOMER Uniprot:Q4K4H4
Length = 622
Score = 355 (130.0 bits), Expect = 4.7e-38, Sum P(2) = 4.7e-38
Identities = 97/329 (29%), Positives = 169/329 (51%)
Query: 32 AIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII-----NLKQT 86
AI G+ +PT +Q+RAIP +LQ +D++V A+TG+GKTG FA+P+++++ + Q
Sbjct: 15 AIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGHPDKSQR 74
Query: 87 AQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVD--ISEQVDVSVQEPLLVERP 144
++ + LVL+P++EL Q+H + + +RD+K V I V ++ Q +
Sbjct: 75 HGPRQPRVLVLTPTRELAAQVHDSFKLY----ARDLKFVSACIFGGVGMNPQVQAMARGV 130
Query: 145 DIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAIL 204
D++VA P R L ++DL S +EI+++DEAD + G+ D+K VL LP Q +L
Sbjct: 131 DVLVACPGRLLDLAGQGSVDL-SHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLL 189
Query: 205 ASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNL 264
SAT S+D+ L +L NP +++ P V ++ K +L L+
Sbjct: 190 FSATFSKDITDLAGKLLHNPERIEVTPPNTT-VERIEQRVFRLPASHKRALLAHLITAGA 248
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
+ + ++F T +L YL++ +S ++ AR A+ F G +++A+D
Sbjct: 249 WE-QVLVFTRTKHGANRLAEYLDKHGLSAVAIHGNKSQNARTKALADFKAGEVRILVATD 307
Query: 325 --EKALETPQINSTNNRKRKRDKESGVSR 351
+ L+ Q+ N + E V R
Sbjct: 308 IAARGLDIDQLPHVVNFELPNVDEDYVHR 336
Score = 112 (44.5 bits), Expect = 4.7e-38, Sum P(2) = 4.7e-38
Identities = 23/69 (33%), Positives = 39/69 (56%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSF 409
+RG+D + +V+NF+ P + Y+HR GRT R G A+S V+ E+ L+ ++
Sbjct: 310 ARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERMTK 369
Query: 410 VSLREQDLM 418
+ + DLM
Sbjct: 370 QKIADGDLM 378
>TAIR|locus:2032910 [details] [associations]
symbol:RH36 "RNA helicase 36" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0006364 "rRNA processing" evidence=IMP] [GO:0009553 "embryo sac
development" evidence=IMP] [GO:0009791 "post-embryonic development"
evidence=IMP] [GO:0090406 "pollen tube" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0009561 "megagametogenesis"
evidence=IMP] [GO:0006606 "protein import into nucleus"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0005634 GO:GO:0003676
GO:GO:0009791 GO:GO:0009561 EMBL:AC006341 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
HOGENOM:HOG000268802 OMA:EVRTVEQ GO:GO:0090406 IPI:IPI00521131
PIR:G86297 RefSeq:NP_173078.1 UniGene:At.51634
ProteinModelPortal:Q9SA27 SMR:Q9SA27 PaxDb:Q9SA27 PRIDE:Q9SA27
EnsemblPlants:AT1G16280.1 GeneID:838197 KEGG:ath:AT1G16280
KEGG:dosa:Os07t0633500-00 GeneFarm:1012 TAIR:At1g16280
InParanoid:Q9SA27 PhylomeDB:Q9SA27 ProtClustDB:CLSN2679781
Genevestigator:Q9SA27 GermOnline:AT1G16280 Uniprot:Q9SA27
Length = 491
Score = 342 (125.4 bits), Expect = 6.3e-38, Sum P(2) = 6.3e-38
Identities = 97/330 (29%), Positives = 165/330 (50%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++ +LG +PT +Q +P IL +DVL A+TGSGKT AFA+P++ ++
Sbjct: 70 VETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHRLAE-----DP 124
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
ALV++P++EL QL + + L C +++C I +D+ Q LV RP IV+
Sbjct: 125 YGVFALVVTPTRELAFQLAEQFKALG-SCL-NLRCSVIVGGMDMLTQTMSLVSRPHIVIT 182
Query: 150 TPAR--ALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
TP R L + S + +++DEAD V G++D+++ + + LPK Q +L SA
Sbjct: 183 TPGRIKVLLENNPDVPPVFSRTKFLVLDEADRVLDVGFQDELRTIFQCLPKSRQTLLFSA 242
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
T++ ++ +L + E + V L I ED+ A LY + L+ ++
Sbjct: 243 TMTSNLQALLEHSSNKAYFYEAYE-GLKTVDTLTQQFIF--EDKDAKELYLVHILSQMED 299
Query: 268 KTI----IFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIAS 323
K I IFV+T C +L L L++ ++ ++S R A+ +F G +++A+
Sbjct: 300 KGIRSAMIFVSTCRTCQRLSLMLDELEVENIAMHSLNSQSMRLSALSKFKSGKVPILLAT 359
Query: 324 D--EKALETPQINSTNNRKRKRDKESGVSR 351
D + L+ P ++ N RD V R
Sbjct: 360 DVASRGLDIPTVDLVINYDIPRDPRDYVHR 389
Score = 113 (44.8 bits), Expect = 6.3e-38, Sum P(2) = 6.3e-38
Identities = 23/53 (43%), Positives = 33/53 (62%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMN 402
SRG+D V VIN+D P D + Y+HR GRTAR G A+S ++ + L++
Sbjct: 363 SRGLDIPTVDLVINYDIPRDPRDYVHRVGRTARAGRGGLAVSIITETDVKLIH 415
>CGD|CAL0001638 [details] [associations]
symbol:FAL1 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0097078 "FAl1-SGD1 complex"
evidence=IEA] [GO:0000462 "maturation of SSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0001638 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AACQ01000041 EMBL:AACQ01000040 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AJ250879
RefSeq:XP_718509.1 RefSeq:XP_718592.1 ProteinModelPortal:Q5A9Z6
SMR:Q5A9Z6 GeneID:3639739 GeneID:3639839 KEGG:cal:CaO19.10024
KEGG:cal:CaO19.2488 KO:K13025 Uniprot:Q5A9Z6
Length = 399
Score = 311 (114.5 bits), Expect = 6.5e-38, Sum P(2) = 6.5e-38
Identities = 89/326 (27%), Positives = 171/326 (52%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ I G+ P+ IQ RAI I+ +D + +A++G+GKT F+I M++ +I+ K
Sbjct: 38 LKGIYAYGFETPSAIQSRAIMQIISGRDTIAQAQSGTGKTATFSIGMLE-VIDTKS---- 92
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVK-CVDISEQVDVSVQEPLLVERPDIVV 148
+E +AL+LSP++EL Q+ ++ L + C+ + V V++ L + IV
Sbjct: 93 KECQALILSPTRELAIQIQNVVKHLGDYMNIHTHACIG-GKNVGEDVKK--LQQGQQIVS 149
Query: 149 ATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
TP R + +K + L ++ ++++I+DEAD +F+ G+++ + + K LP Q ++ SAT
Sbjct: 150 GTPGRVIDVIKRRNLQTRN-IKVLILDEADELFTKGFKEQIYEIYKHLPPSVQVVVVSAT 208
Query: 209 LSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQ-EDEKATILYTLLKLNLVQG 267
L +VL + +PV + ++ I+ +S + Y++ + ED K L L NL
Sbjct: 209 LPREVLEMTSKFTTDPVKILVKRDEIS-LSGIKQYYVQCEREDWKFDTLCDLYD-NLTIT 266
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD--E 325
+ +IF NT K L +++ + ++ ++ R + F +G V+I++D
Sbjct: 267 QAVIFCNTKLKVNWLADQMKKQNFTVVAMHGDMKQDERDSIMNDFRRGNSRVLISTDVWA 326
Query: 326 KALETPQINSTNNRKRKRDKESGVSR 351
+ ++ Q++ N DKE+ + R
Sbjct: 327 RGIDVQQVSLVINYDLPTDKENYIHR 352
Score = 121 (47.7 bits), Expect = 6.5e-38, Sum P(2) = 6.5e-38
Identities = 26/76 (34%), Positives = 47/76 (61%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSF 409
+RGID Q VS VIN+D P D + YIHR GR+ R +GTA++ ++ + D++ +
Sbjct: 326 ARGIDVQQVSLVINYDLPTDKENYIHRIGRSGRFGRKGTAINLIT--KDDVVTLKEFEKY 383
Query: 410 VSLREQDLMNDVNEYL 425
S + +++ ++N+ +
Sbjct: 384 YSTKIKEMPMNINDIM 399
>UNIPROTKB|Q8TDD1 [details] [associations]
symbol:DDX54 "ATP-dependent RNA helicase DDX54"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0003714
"transcription corepressor activity" evidence=IDA] [GO:0005102
"receptor binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0006396
"RNA processing" evidence=IDA] [GO:0016070 "RNA metabolic process"
evidence=IDA] [GO:0030331 "estrogen receptor binding" evidence=IDA]
[GO:0030520 "intracellular estrogen receptor signaling pathway"
evidence=TAS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
GO:GO:0006355 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
GO:GO:0030331 GO:GO:0030520 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455 OMA:FYIPYRP
EMBL:AF478457 EMBL:AC089999 EMBL:AY148094 EMBL:BC005848
IPI:IPI00152510 IPI:IPI00879999 RefSeq:NP_001104792.1
RefSeq:NP_076977.3 UniGene:Hs.506861 ProteinModelPortal:Q8TDD1
SMR:Q8TDD1 IntAct:Q8TDD1 STRING:Q8TDD1 PhosphoSite:Q8TDD1
DMDM:46576615 SWISS-2DPAGE:Q8TDD1 PaxDb:Q8TDD1 PRIDE:Q8TDD1
DNASU:79039 Ensembl:ENST00000306014 Ensembl:ENST00000314045
GeneID:79039 KEGG:hsa:79039 UCSC:uc001tup.3 UCSC:uc001tuq.4
CTD:79039 GeneCards:GC12M113595 HGNC:HGNC:20084 HPA:HPA028244
MIM:611665 neXtProt:NX_Q8TDD1 PharmGKB:PA134992026
HOVERGEN:HBG051333 InParanoid:Q8TDD1 ChiTaRS:DDX54 GenomeRNAi:79039
NextBio:67773 ArrayExpress:Q8TDD1 Bgee:Q8TDD1 CleanEx:HS_DDX54
Genevestigator:Q8TDD1 GermOnline:ENSG00000123064 Uniprot:Q8TDD1
Length = 881
Score = 362 (132.5 bits), Expect = 6.9e-38, Sum P(2) = 6.9e-38
Identities = 105/313 (33%), Positives = 164/313 (52%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ 90
+ I K G+ PT IQ + IP+IL KDV+ ARTGSGKT F +PM ++ LK +
Sbjct: 109 KGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER---LKTHSAQT 165
Query: 91 ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVAT 150
+AL+LSP++EL Q K +EL + ++++ Q L E PDI++AT
Sbjct: 166 GARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMED--QFAALHENPDIIIAT 223
Query: 151 PARALAHLKAKTLDLK-SSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
P R L H+ A + LK S+E V+ DEAD +F G+ + ++ ++ LP +Q +L SATL
Sbjct: 224 PGR-LVHV-AVEMSLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLPGGHQTVLFSATL 281
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLV--QG 267
+ ++ L PV+++L+ QL L +ED KA +L LL N+V Q
Sbjct: 282 PKLLVEFARAGLTEPVLIRLDVDTKLN-EQLKTSFFLVREDTKAAVLLHLLH-NVVRPQD 339
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD--E 325
+T++FV T L L ++S + S L AR + +F G +I +D
Sbjct: 340 QTVVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKFTLGKCSTLIVTDLAA 399
Query: 326 KALETPQINSTNN 338
+ L+ P +++ N
Sbjct: 400 RGLDIPLLDNVIN 412
Score = 110 (43.8 bits), Expect = 6.9e-38, Sum P(2) = 6.9e-38
Identities = 41/149 (27%), Positives = 70/149 (46%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND-----G 404
+RG+D + NVIN+ FP + ++HR GR AR GTA S V+ E + D G
Sbjct: 399 ARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEIPYLLDLHLFLG 458
Query: 405 TALSFVS-LREQDLMNDVNEYL----MTNLHEDDFIIKP-YQFNLDEVKGFEYRAKDAWR 458
+L+ L+E + V+ L + + E+D ++ + +L E++G R D +
Sbjct: 459 RSLTLARPLKEPSGVAGVDGMLGRVPQSVVDEEDSGLQSTLEASL-ELRGLA-RVADNAQ 516
Query: 459 SNYFEDNPTDL-ETLRHDKALYTVRIQSH 486
Y P E+++ K + V + H
Sbjct: 517 QQYVRSRPAPSPESIKRAKEMDLVGLGLH 545
>GENEDB_PFALCIPARUM|PFF1500c [details] [associations]
symbol:PFF1500c "DEAD/DEAH box ATP-dependent RNA
helicase, putative" species:5833 "Plasmodium falciparum"
[GO:0016070 "RNA metabolic process" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
EMBL:AL844505 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
RefSeq:XP_966291.1 ProteinModelPortal:C6KTE4
EnsemblProtists:PFF1500c:mRNA GeneID:3885813 KEGG:pfa:PFF1500c
EuPathDB:PlasmoDB:PF3D7_0630900 ProtClustDB:CLSZ2514457
Uniprot:C6KTE4
Length = 601
Score = 351 (128.6 bits), Expect = 7.7e-38, Sum P(2) = 7.7e-38
Identities = 97/325 (29%), Positives = 170/325 (52%)
Query: 16 YFELPFTFTLFCIPLQ-AIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAI 74
Y EL F C L+ + +L ++ T IQ + IP L KD+L A+TGSGKT AF +
Sbjct: 145 YSELKFEELNICDALKKGLKELNFVTLTEIQAKCIPHFLSGKDILGAAKTGSGKTLAFLV 204
Query: 75 PMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVS 134
P I + N+K + T L++SP++ELC Q+++ ++L K + I + +
Sbjct: 205 PSINILYNIKFLPK-NGTGVLIISPTRELCLQIYQVCKDLC-KYIPQTNGIIIGG-MSRN 261
Query: 135 VQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLK 194
++ + +I++ATP R L H++ + +L +IIDEAD + G+E+++ ++K
Sbjct: 262 EEKKKFIHGINILIATPGRLLDHMQNTKEFIYKNLICLIIDEADRLLQIGFEEEINLIIK 321
Query: 195 FLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKAT 254
LPK Q L SAT + V SL L L+ P+ +++ IA V +L + L ED++
Sbjct: 322 RLPKKRQTALFSATQTTKVESLIRLSLQKPIFIEVTTK-IATVERLQQGYALVDEDKRFL 380
Query: 255 ILYTLLKLNLVQGKTIIFVNTVDKCYKLKLY---LEQFKISTCVLNSELPAKARCHAVYQ 311
+L+T LK N+ + K ++F N C ++ Y L I T ++ + R + +
Sbjct: 381 LLFTFLKKNMSK-KIMVFFNN---CMSVQFYNDLLNYIDIPTYCIHGKKKQNKRLKSFHD 436
Query: 312 FNQGLYDVIIASDEKA--LETPQIN 334
F+ +++ ++ A L+ P +N
Sbjct: 437 FSAAKCAILLCTNVAARGLDIPNVN 461
Score = 114 (45.2 bits), Expect = 7.7e-38, Sum P(2) = 7.7e-38
Identities = 28/94 (29%), Positives = 47/94 (50%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQ-GTALSFVSLREQDLMNDGTALS 408
+RG+D V+ +I +D P D + YIHR GRT RG++ G+A+ F+ E +N L
Sbjct: 452 ARGLDIPNVNYIIQYDPPDDSKEYIHRVGRTCRGQDSNGSAIIFLMKHELKFLN---YLK 508
Query: 409 FVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFN 442
F ++ D N+ + H + K + +
Sbjct: 509 FYNIPINQFAYDPNKLINIQSHIQSIVTKNFHLH 542
>UNIPROTKB|C6KTE4 [details] [associations]
symbol:PFF1500c "DEAD/DEAH box ATP-dependent RNA helicase,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 EMBL:AL844505 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY RefSeq:XP_966291.1
ProteinModelPortal:C6KTE4 EnsemblProtists:PFF1500c:mRNA
GeneID:3885813 KEGG:pfa:PFF1500c EuPathDB:PlasmoDB:PF3D7_0630900
ProtClustDB:CLSZ2514457 Uniprot:C6KTE4
Length = 601
Score = 351 (128.6 bits), Expect = 7.7e-38, Sum P(2) = 7.7e-38
Identities = 97/325 (29%), Positives = 170/325 (52%)
Query: 16 YFELPFTFTLFCIPLQ-AIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAI 74
Y EL F C L+ + +L ++ T IQ + IP L KD+L A+TGSGKT AF +
Sbjct: 145 YSELKFEELNICDALKKGLKELNFVTLTEIQAKCIPHFLSGKDILGAAKTGSGKTLAFLV 204
Query: 75 PMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVS 134
P I + N+K + T L++SP++ELC Q+++ ++L K + I + +
Sbjct: 205 PSINILYNIKFLPK-NGTGVLIISPTRELCLQIYQVCKDLC-KYIPQTNGIIIGG-MSRN 261
Query: 135 VQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLK 194
++ + +I++ATP R L H++ + +L +IIDEAD + G+E+++ ++K
Sbjct: 262 EEKKKFIHGINILIATPGRLLDHMQNTKEFIYKNLICLIIDEADRLLQIGFEEEINLIIK 321
Query: 195 FLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKAT 254
LPK Q L SAT + V SL L L+ P+ +++ IA V +L + L ED++
Sbjct: 322 RLPKKRQTALFSATQTTKVESLIRLSLQKPIFIEVTTK-IATVERLQQGYALVDEDKRFL 380
Query: 255 ILYTLLKLNLVQGKTIIFVNTVDKCYKLKLY---LEQFKISTCVLNSELPAKARCHAVYQ 311
+L+T LK N+ + K ++F N C ++ Y L I T ++ + R + +
Sbjct: 381 LLFTFLKKNMSK-KIMVFFNN---CMSVQFYNDLLNYIDIPTYCIHGKKKQNKRLKSFHD 436
Query: 312 FNQGLYDVIIASDEKA--LETPQIN 334
F+ +++ ++ A L+ P +N
Sbjct: 437 FSAAKCAILLCTNVAARGLDIPNVN 461
Score = 114 (45.2 bits), Expect = 7.7e-38, Sum P(2) = 7.7e-38
Identities = 28/94 (29%), Positives = 47/94 (50%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQ-GTALSFVSLREQDLMNDGTALS 408
+RG+D V+ +I +D P D + YIHR GRT RG++ G+A+ F+ E +N L
Sbjct: 452 ARGLDIPNVNYIIQYDPPDDSKEYIHRVGRTCRGQDSNGSAIIFLMKHELKFLN---YLK 508
Query: 409 FVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFN 442
F ++ D N+ + H + K + +
Sbjct: 509 FYNIPINQFAYDPNKLINIQSHIQSIVTKNFHLH 542
>WB|WBGene00022378 [details] [associations]
symbol:Y94H6A.5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0040010 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455
OMA:FYIPYRP GeneTree:ENSGT00550000075100 EMBL:FO081810
GeneID:177054 KEGG:cel:CELE_Y94H6A.5 UCSC:Y94H6A.5a CTD:177054
NextBio:895136 RefSeq:NP_741347.2 ProteinModelPortal:Q688Z4
SMR:Q688Z4 STRING:Q688Z4 PRIDE:Q688Z4 EnsemblMetazoa:Y94H6A.5b
WormBase:Y94H6A.5b InParanoid:Q688Z4 ArrayExpress:Q688Z4
Uniprot:Q688Z4
Length = 871
Score = 361 (132.1 bits), Expect = 1.1e-37, Sum P(2) = 1.1e-37
Identities = 95/313 (30%), Positives = 177/313 (56%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ 90
+AI K G+ +PT IQ + IP I+ KDV+ +RTGSGKT AF IPM+QK+ + T +
Sbjct: 37 KAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRTGSGKTAAFVIPMLQKL-KRRDTTGI- 94
Query: 91 ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVAT 150
+AL++SP++EL Q K ++EL C+ +Q++ Q + E PDI++AT
Sbjct: 95 --RALMVSPTRELALQTFKVVKELGRFTGLRCACLVGGDQIEE--QFSTIHENPDILLAT 150
Query: 151 PARALAHLKAKTLDLKSS-LEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
P R L H+ + +DL+ S ++ V+ DEAD +F G++D + LK +P+ Q +L SATL
Sbjct: 151 PGRLL-HVIVE-MDLRLSYVQYVVFDEADRLFEMGFQDQLTETLKRIPESRQTLLFSATL 208
Query: 210 SEDVLSLKHLILRNPVILKLE-EPAIAPVSQLAHYHILAQEDEKA-TILYTLLKLNLVQG 267
+ ++ L +P++++L+ + ++ +L+ + + DEK +L+ +++
Sbjct: 209 PKMLVDFAKAGLTDPMLVRLDVDEKVS--DKLSMVFCMCRPDEKLFALLHLCRRMDRENK 266
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
+T++F T+ + L + I + S+L A AR + +F++ ++++ +D A
Sbjct: 267 QTVVFCATMKHVEYVVGILHRAGIDCSFVYSQLDATARKMNIQKFHEKQNNILVVTDVAA 326
Query: 328 --LETPQINSTNN 338
++ P +++ N
Sbjct: 327 RGVDIPLLDTVIN 339
Score = 109 (43.4 bits), Expect = 1.1e-37, Sum P(2) = 1.1e-37
Identities = 24/75 (32%), Positives = 39/75 (52%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSF 409
+RG+D + VIN FP + ++HR GR AR GTA+S ++ E + D F
Sbjct: 326 ARGVDIPLLDTVINLHFPPKAKLFVHRVGRVARAGRSGTAISLIANDELPYLTD--LFMF 383
Query: 410 VSLREQDLMNDVNEY 424
+ + + +D +EY
Sbjct: 384 LG-KPINFASDKSEY 397
>DICTYBASE|DDB_G0269192 [details] [associations]
symbol:tifA "eukaryotic translation initiation factor
4A" species:44689 "Dictyostelium discoideum" [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006413
"translational initiation" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0269192 GO:GO:0005524 GO:GO:0005737
EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
KO:K13025 OMA:LALGDFM RefSeq:XP_646270.1 ProteinModelPortal:Q55D61
SMR:Q55D61 PRIDE:Q55D61 EnsemblProtists:DDB0191511 GeneID:8617226
KEGG:ddi:DDB_G0269192 Uniprot:Q55D61
Length = 405
Score = 305 (112.4 bits), Expect = 1.2e-37, Sum P(2) = 1.2e-37
Identities = 90/327 (27%), Positives = 167/327 (51%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ I G+ +P+ IQ+RAI I++ +D + +A++G+GKT F+I +Q + V
Sbjct: 44 LRGIFNYGFEKPSAIQQRAILPIIKGRDTIAQAQSGTGKTATFSIGALQCV-----EVNV 98
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVK-CVDISEQVDVSVQEPLLVERPDIVV 148
+ + L+LSP++EL Q+ K L+ + V CV + + V++ L IV
Sbjct: 99 RSPQVLILSPTRELAQQIQKVALALSEFMNIQVHACVG-GKNLSDDVKK--LETGVHIVS 155
Query: 149 ATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
TP R L + K+L + ++++I+DEAD + S G++ + V ++LP Q +L SAT
Sbjct: 156 GTPGRVLDMITRKSLPTRH-IKMMILDEADEMLSLGFQQQINDVYRYLPNGTQIVLVSAT 214
Query: 209 LSEDVLSLKHLILRNPV--ILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQ 266
L++DV+S+ + PV +LK +E + + Q + + +ED K L + +L
Sbjct: 215 LTQDVVSMTEKFMTKPVRILLKRDELTLDGIKQF--FVSVEKEDWKFGTLCDIYD-SLTI 271
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD-- 324
+ +IF NT K +L + + ++ ++ K R + F G V+I +D
Sbjct: 272 TQAVIFCNTKKKVDQLTEQMRDANFTVASMHGDMVQKEREEIIKSFRSGENRVLITTDIL 331
Query: 325 EKALETPQINSTNNRKRKRDKESGVSR 351
+ ++ Q++ N D+E+ + R
Sbjct: 332 ARGIDVQQVSLVINYDLPIDRENYIHR 358
Score = 125 (49.1 bits), Expect = 1.2e-37, Sum P(2) = 1.2e-37
Identities = 25/55 (45%), Positives = 37/55 (67%)
Query: 349 VSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND 403
++RGID Q VS VIN+D P+D + YIHR GR+ R +G A++FV + ++ D
Sbjct: 331 LARGIDVQQVSLVINYDLPIDRENYIHRIGRSGRFGRKGVAINFVKNSDIRILRD 385
Score = 43 (20.2 bits), Expect = 4.8e-29, Sum P(2) = 4.8e-29
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 404 GTALSFVSLREQDLMNDVNEYLMTNLHE 431
G A++FV + ++ D+ ++ T + E
Sbjct: 369 GVAINFVKNSDIRILRDIEQFYSTQIDE 396
>UNIPROTKB|Q8EIE5 [details] [associations]
symbol:dbpA "ATP-dependent RNA helicase DbpA"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
Length = 458
Score = 337 (123.7 bits), Expect = 1.2e-37, Sum P(2) = 1.2e-37
Identities = 96/327 (29%), Positives = 173/327 (52%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ ++ +G+ E T IQ +++P IL +DV+ + +TGSGKT AF + ++ K+ ++K+ ++
Sbjct: 13 LENLSSMGYNEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLLNKL-DVKRF-RI 70
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
Q LVL P++EL +Q+ + I+ L + +VK + + V + Q L I+V
Sbjct: 71 Q---TLVLCPTRELADQVAQEIRTLA-RGIHNVKVLTLCGGVPMGPQIGSLEHGAHIIVG 126
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + HL LDL S+L ++++DEAD + G++ + A+++ P+ Q +L SAT
Sbjct: 127 TPGRIVDHLDRNRLDL-SNLNMLVLDEADRMLEMGFQPQLDAIIEQSPRERQTLLFSATF 185
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGK- 268
E + S+ I+ NPV++K A+ H +D+K+ + L+L L++ K
Sbjct: 186 PEQIQSIAKQIMYNPVMVKA---AVTHEKNTIEQHFYQLDDDKSRM--QALQLLLLEHKP 240
Query: 269 --TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
++F NT + K+ LE S L+ +L + R + QF V++A+D
Sbjct: 241 ESAVVFCNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSACVLVATDVA 300
Query: 327 A--LETPQINSTNNRKRKRDKESGVSR 351
A L+ +++ N D E + R
Sbjct: 301 ARGLDIDALDAVFNYHVAYDTEVHIHR 327
Score = 89 (36.4 bits), Expect = 1.2e-37, Sum P(2) = 1.2e-37
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQD 399
+RG+D + V N+ D + +IHR GRT R ++G A +F + +QD
Sbjct: 301 ARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFYN--DQD 348
>TIGR_CMR|SO_0897 [details] [associations]
symbol:SO_0897 "ATP-dependent RNA helicase DbpA"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
Length = 458
Score = 337 (123.7 bits), Expect = 1.2e-37, Sum P(2) = 1.2e-37
Identities = 96/327 (29%), Positives = 173/327 (52%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ ++ +G+ E T IQ +++P IL +DV+ + +TGSGKT AF + ++ K+ ++K+ ++
Sbjct: 13 LENLSSMGYNEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLLNKL-DVKRF-RI 70
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
Q LVL P++EL +Q+ + I+ L + +VK + + V + Q L I+V
Sbjct: 71 Q---TLVLCPTRELADQVAQEIRTLA-RGIHNVKVLTLCGGVPMGPQIGSLEHGAHIIVG 126
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + HL LDL S+L ++++DEAD + G++ + A+++ P+ Q +L SAT
Sbjct: 127 TPGRIVDHLDRNRLDL-SNLNMLVLDEADRMLEMGFQPQLDAIIEQSPRERQTLLFSATF 185
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGK- 268
E + S+ I+ NPV++K A+ H +D+K+ + L+L L++ K
Sbjct: 186 PEQIQSIAKQIMYNPVMVKA---AVTHEKNTIEQHFYQLDDDKSRM--QALQLLLLEHKP 240
Query: 269 --TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
++F NT + K+ LE S L+ +L + R + QF V++A+D
Sbjct: 241 ESAVVFCNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSACVLVATDVA 300
Query: 327 A--LETPQINSTNNRKRKRDKESGVSR 351
A L+ +++ N D E + R
Sbjct: 301 ARGLDIDALDAVFNYHVAYDTEVHIHR 327
Score = 89 (36.4 bits), Expect = 1.2e-37, Sum P(2) = 1.2e-37
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQD 399
+RG+D + V N+ D + +IHR GRT R ++G A +F + +QD
Sbjct: 301 ARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFYN--DQD 348
>WB|WBGene00022029 [details] [associations]
symbol:Y65B4A.6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0018991 "oviposition" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0018996 "molting cycle, collagen and
cuticulin-based cuticle" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0018991 GO:GO:0002119
GO:GO:0018996 GO:GO:0040011 GO:GO:0003676 GO:GO:0042127
GO:GO:0040035 GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GeneTree:ENSGT00530000062880 KO:K13025 OMA:EDWKFDT EMBL:FO081482
RefSeq:NP_490761.2 ProteinModelPortal:Q9BL61 SMR:Q9BL61
STRING:Q9BL61 PaxDb:Q9BL61 EnsemblMetazoa:Y65B4A.6 GeneID:190485
KEGG:cel:CELE_Y65B4A.6 UCSC:Y65B4A.6 CTD:190485 WormBase:Y65B4A.6
InParanoid:Q9BL61 NextBio:945920 Uniprot:Q9BL61
Length = 399
Score = 317 (116.6 bits), Expect = 2.4e-37, Sum P(2) = 2.4e-37
Identities = 85/326 (26%), Positives = 173/326 (53%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ I G+ +P+ IQ+RAIP IL+ +DV+ +A++G+GKT F+I ++Q + QV
Sbjct: 38 LRGIYAYGFEKPSAIQQRAIPAILKARDVIAQAQSGTGKTATFSISVLQSL-----DTQV 92
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ET+AL+LSP++EL Q+ K + L + +V+C ++ L +V
Sbjct: 93 RETQALILSPTRELAVQIQKVV--LALGDYMNVQCHACIGGTNLGEDIRKLDYGQHVVSG 150
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R ++ + L ++ ++++++DEAD + + G+++ + + ++LP Q +L SATL
Sbjct: 151 TPGRVFDMIRRRNLRTRA-IKLLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVVLLSATL 209
Query: 210 SEDVLSLKHLILRNPV--ILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
++L + + +P+ ++K +E + + Q + + +E+ K L L L
Sbjct: 210 PHEILEMTSKFMTDPIRILVKRDELTLEGIKQF--FVAVDREEWKFDTLIDLYD-TLTIT 266
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD--E 325
+ ++F NT K L +++ + ++ ++ K R + +F G V+I++D
Sbjct: 267 QAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLISTDVWA 326
Query: 326 KALETPQINSTNNRKRKRDKESGVSR 351
+ L+ PQ++ N ++E + R
Sbjct: 327 RGLDVPQVSLVINYDLPNNRELYIHR 352
Score = 109 (43.4 bits), Expect = 2.4e-37, Sum P(2) = 2.4e-37
Identities = 22/54 (40%), Positives = 34/54 (62%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND 403
+RG+D VS VIN+D P + + YIHR GR+ R +G A++FV + ++ D
Sbjct: 326 ARGLDVPQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKQDDVRILRD 379
Score = 48 (22.0 bits), Expect = 5.9e-31, Sum P(2) = 5.9e-31
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 404 GTALSFVSLREQDLMNDVNEYLMTNLHE 431
G A++FV + ++ D+ +Y T + E
Sbjct: 363 GVAINFVKQDDVRILRDIEQYYSTQIDE 390
>UNIPROTKB|Q81JK1 [details] [associations]
symbol:BAS5307 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 325 (119.5 bits), Expect = 2.5e-37, Sum P(2) = 2.5e-37
Identities = 92/323 (28%), Positives = 167/323 (51%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ 90
+A+ LG+ PT +Q IP+ LQ KD++V+++TGSGKT +F IP+ + + +
Sbjct: 17 RALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMV-----EWEEN 71
Query: 91 ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVAT 150
+ +ALVL+P++EL Q+ ++I + + R +K I + + Q+ L ++ IVV T
Sbjct: 72 KPQALVLTPTRELAVQVKEDITNIG-RFKR-IKAAAIYGKSPFARQKLELKQKTHIVVGT 129
Query: 151 PARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLS 210
P R L H++ TL L+ L+ ++IDEAD + + G+ D ++A++ LP +L SATL
Sbjct: 130 PGRVLDHIEKGTLSLER-LKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLP 188
Query: 211 EDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTI 270
EDV L + P ++++ I ++ H +E+EK ++L + + I
Sbjct: 189 EDVERLSRTYMNAPTHIEIKAAGIT-TDKIEHTLFEVREEEKLSLLKDVTTIENPDS-CI 246
Query: 271 IFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA--L 328
IF T + + L++ ++ + + R + F +G + ++A+D A +
Sbjct: 247 IFCRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVATDVAARGI 306
Query: 329 ETPQINSTNNRKRKRDKESGVSR 351
+ I N +KES V R
Sbjct: 307 DIDNITHVINYDIPLEKESYVHR 329
Score = 130 (50.8 bits), Expect = 2.5e-37, Sum P(2) = 2.5e-37
Identities = 22/54 (40%), Positives = 36/54 (66%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND 403
+RGID +++VIN+D PL+ + Y+HR GRT R N G A++F++ E + +
Sbjct: 303 ARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEE 356
Score = 41 (19.5 bits), Expect = 5.3e-28, Sum P(2) = 5.3e-28
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 402 NDGTALSFVSLREQDLMNDVNEYL 425
N G A++F++ E + ++ Y+
Sbjct: 338 NSGKAITFITPYEDRFLEEIEAYI 361
>TIGR_CMR|BA_5703 [details] [associations]
symbol:BA_5703 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 325 (119.5 bits), Expect = 2.5e-37, Sum P(2) = 2.5e-37
Identities = 92/323 (28%), Positives = 167/323 (51%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ 90
+A+ LG+ PT +Q IP+ LQ KD++V+++TGSGKT +F IP+ + + +
Sbjct: 17 RALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMV-----EWEEN 71
Query: 91 ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVAT 150
+ +ALVL+P++EL Q+ ++I + + R +K I + + Q+ L ++ IVV T
Sbjct: 72 KPQALVLTPTRELAVQVKEDITNIG-RFKR-IKAAAIYGKSPFARQKLELKQKTHIVVGT 129
Query: 151 PARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLS 210
P R L H++ TL L+ L+ ++IDEAD + + G+ D ++A++ LP +L SATL
Sbjct: 130 PGRVLDHIEKGTLSLER-LKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLP 188
Query: 211 EDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTI 270
EDV L + P ++++ I ++ H +E+EK ++L + + I
Sbjct: 189 EDVERLSRTYMNAPTHIEIKAAGIT-TDKIEHTLFEVREEEKLSLLKDVTTIENPDS-CI 246
Query: 271 IFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA--L 328
IF T + + L++ ++ + + R + F +G + ++A+D A +
Sbjct: 247 IFCRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVATDVAARGI 306
Query: 329 ETPQINSTNNRKRKRDKESGVSR 351
+ I N +KES V R
Sbjct: 307 DIDNITHVINYDIPLEKESYVHR 329
Score = 130 (50.8 bits), Expect = 2.5e-37, Sum P(2) = 2.5e-37
Identities = 22/54 (40%), Positives = 36/54 (66%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND 403
+RGID +++VIN+D PL+ + Y+HR GRT R N G A++F++ E + +
Sbjct: 303 ARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEE 356
Score = 41 (19.5 bits), Expect = 5.3e-28, Sum P(2) = 5.3e-28
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 402 NDGTALSFVSLREQDLMNDVNEYL 425
N G A++F++ E + ++ Y+
Sbjct: 338 NSGKAITFITPYEDRFLEEIEAYI 361
>TIGR_CMR|CPS_1125 [details] [associations]
symbol:CPS_1125 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_267868.1
ProteinModelPortal:Q486Z7 STRING:Q486Z7 GeneID:3520292
KEGG:cps:CPS_1125 PATRIC:21465509 OMA:AYSKYLR
BioCyc:CPSY167879:GI48-1206-MONOMER Uniprot:Q486Z7
Length = 466
Score = 325 (119.5 bits), Expect = 2.6e-37, Sum P(2) = 2.6e-37
Identities = 83/296 (28%), Positives = 157/296 (53%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLK-QTAQ 88
L+A+ G+ P+ IQ +AIP ++ +DV+ A+TG+GKT F +P++Q++ + K
Sbjct: 18 LKAVRDKGYETPSPIQAQAIPAVISGRDVMAAAQTGTGKTAGFTLPLLQRLSSSKGNKVS 77
Query: 89 VQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
+AL+L+P++EL Q+ ++I E+ K ++ + + V ++ Q L + D++V
Sbjct: 78 SNNVRALILTPTRELAAQISESI-EVYGKYL-NLHSMVVFGGVKINPQIARLRQGVDVLV 135
Query: 149 ATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
ATP R L + + S LE+ I+DEAD + G+ D+K ++ LPK Q +L SAT
Sbjct: 136 ATPGRLLDLYNQRAVKF-SQLEVFILDEADRMLDMGFIRDIKKLMTALPKDRQNLLFSAT 194
Query: 209 LSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGK 268
S ++ +L ++ NP+ + ++ + ++ + + K +L L+K N Q +
Sbjct: 195 FSPEIRALAKGMVNNPLEISVDAEN-STAEKVTQWLTAVDKKRKPAVLTHLIKENNWQ-Q 252
Query: 269 TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
++F T KL +LE ++ ++ AR A+ F G +++A+D
Sbjct: 253 VLVFTKTKHGANKLTKHLEAEGLTAAAIHGNKSQGARTKALAAFKDGSVKILVATD 308
Score = 126 (49.4 bits), Expect = 2.6e-37, Sum P(2) = 2.6e-37
Identities = 26/52 (50%), Positives = 32/52 (61%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLM 401
+RGID + V+NFD P + Y+HR GRTAR N G ALS V E DL+
Sbjct: 311 ARGIDIDLLPQVVNFDLPNVPEDYVHRIGRTARAGNTGQALSLVCADELDLL 362
Score = 38 (18.4 bits), Expect = 4.3e-28, Sum P(2) = 4.3e-28
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 376 RAGRTARGKNQG 387
R+GR A G N G
Sbjct: 422 RSGRNANGNNAG 433
Score = 38 (18.4 bits), Expect = 4.3e-28, Sum P(2) = 4.3e-28
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 402 NDGTALSFVSLREQDLMNDVNEYLMTNL 429
N G ALS V E DL+ + + ++
Sbjct: 346 NTGQALSLVCADELDLLWGIEHVIQQHI 373
>GENEDB_PFALCIPARUM|PFL2010c [details] [associations]
symbol:PFL2010c "DEAD/DEAH box helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014188
GO:GO:0016070 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195 KO:K01509
RefSeq:XP_001350806.2 ProteinModelPortal:Q8I511 IntAct:Q8I511
MINT:MINT-1630263 EnsemblProtists:PFL2010c:mRNA GeneID:811454
KEGG:pfa:PFL2010c EuPathDB:PlasmoDB:PF3D7_1241800
HOGENOM:HOG000283512 ProtClustDB:CLSZ2848517 Uniprot:Q8I511
Length = 878
Score = 262 (97.3 bits), Expect = 2.7e-37, Sum P(3) = 2.7e-37
Identities = 67/202 (33%), Positives = 117/202 (57%)
Query: 41 PTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII--NLKQTAQVQET-KALVL 97
PT+IQ+ +I IL DV++ ++TGSGKT A+ IP++ +I NL + ++ K +++
Sbjct: 135 PTIIQKMSICKILNGHDVIISSKTGSGKTMAYLIPVVHNLIKFNLNEKDHLKFFYKCIII 194
Query: 98 SPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAH 157
P++ELC Q++ ++T K +K DI V+ +V E P I+++TP H
Sbjct: 195 CPTEELCLQIY----DVTKKLCTYLK--DIIT-VNHNVNNTFY-EHPTILISTPKDLCTH 246
Query: 158 L----KAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL----YQAILASATL 209
+ K LD+ +L+I+I+DEAD++ + ++ +K + +LPK YQ ++ASATL
Sbjct: 247 IIEKKKKNNLDILMNLKILILDEADVLHTQEFQSYLKTLTSYLPKKFNKKYQIVMASATL 306
Query: 210 SEDVLSLKHLILRNPVILKLEE 231
++L L L NP+ + E+
Sbjct: 307 KRNILEKTKLFLHNPIYVSHEQ 328
Score = 133 (51.9 bits), Expect = 2.7e-37, Sum P(3) = 2.7e-37
Identities = 41/127 (32%), Positives = 63/127 (49%)
Query: 323 SDEKALETPQINSTNNR-----KRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRA 377
SD + T + N + K +K+ SRG+DF V V+NFD P D + +IHR
Sbjct: 561 SDNNSCRTYNSDDENEKTDDTTKLNEEKDFLYSRGLDFYDVKCVVNFDMPSDSETFIHRI 620
Query: 378 GRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIK 437
GRT R N+G +SFV+ E +N G F+ Q L+ D N M + I++
Sbjct: 621 GRTCRLNNKGKCISFVN--E---LNYGEK-EFL----QKLIEDKNICTMIKKNIQYNIVE 670
Query: 438 PYQFNLD 444
Y++ ++
Sbjct: 671 KYRYRVE 677
Score = 129 (50.5 bits), Expect = 2.7e-37, Sum P(3) = 2.7e-37
Identities = 25/81 (30%), Positives = 44/81 (54%)
Query: 241 AHYHILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSEL 300
A Y++ +E K LY L+K+ ++ K+IIF T+ YK+K++L +S+ +LN
Sbjct: 377 AFYYVYKEELIKYIYLYNLIKIKIIPYKSIIFTTTIHDAYKIKIFLTYLNVSSSILNPNH 436
Query: 301 PAKARCHAVYQFNQGLYDVII 321
P R + + FN + +I
Sbjct: 437 PILIRQNIISAFNNSKFHFLI 457
Score = 43 (20.2 bits), Expect = 7.6e-19, Sum P(2) = 7.6e-19
Identities = 13/55 (23%), Positives = 31/55 (56%)
Query: 249 EDEK-ATILYTLLKLNLVQGKTIIFVNTVDKCY--KLKLYLEQFKISTCVLNSEL 300
ED+ T++ ++ N+V+ +T++KC K+KL++++ + + + EL
Sbjct: 652 EDKNICTMIKKNIQYNIVEKYRYRVESTLNKCTNKKIKLFIQKEILYQSLKSKEL 706
>UNIPROTKB|Q8I511 [details] [associations]
symbol:PFL2010c "DEAD/DEAH box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0016070 "RNA metabolic
process" evidence=ISS] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 EMBL:AE014188 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K01509 RefSeq:XP_001350806.2
ProteinModelPortal:Q8I511 IntAct:Q8I511 MINT:MINT-1630263
EnsemblProtists:PFL2010c:mRNA GeneID:811454 KEGG:pfa:PFL2010c
EuPathDB:PlasmoDB:PF3D7_1241800 HOGENOM:HOG000283512
ProtClustDB:CLSZ2848517 Uniprot:Q8I511
Length = 878
Score = 262 (97.3 bits), Expect = 2.7e-37, Sum P(3) = 2.7e-37
Identities = 67/202 (33%), Positives = 117/202 (57%)
Query: 41 PTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII--NLKQTAQVQET-KALVL 97
PT+IQ+ +I IL DV++ ++TGSGKT A+ IP++ +I NL + ++ K +++
Sbjct: 135 PTIIQKMSICKILNGHDVIISSKTGSGKTMAYLIPVVHNLIKFNLNEKDHLKFFYKCIII 194
Query: 98 SPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAH 157
P++ELC Q++ ++T K +K DI V+ +V E P I+++TP H
Sbjct: 195 CPTEELCLQIY----DVTKKLCTYLK--DIIT-VNHNVNNTFY-EHPTILISTPKDLCTH 246
Query: 158 L----KAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL----YQAILASATL 209
+ K LD+ +L+I+I+DEAD++ + ++ +K + +LPK YQ ++ASATL
Sbjct: 247 IIEKKKKNNLDILMNLKILILDEADVLHTQEFQSYLKTLTSYLPKKFNKKYQIVMASATL 306
Query: 210 SEDVLSLKHLILRNPVILKLEE 231
++L L L NP+ + E+
Sbjct: 307 KRNILEKTKLFLHNPIYVSHEQ 328
Score = 133 (51.9 bits), Expect = 2.7e-37, Sum P(3) = 2.7e-37
Identities = 41/127 (32%), Positives = 63/127 (49%)
Query: 323 SDEKALETPQINSTNNR-----KRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRA 377
SD + T + N + K +K+ SRG+DF V V+NFD P D + +IHR
Sbjct: 561 SDNNSCRTYNSDDENEKTDDTTKLNEEKDFLYSRGLDFYDVKCVVNFDMPSDSETFIHRI 620
Query: 378 GRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIK 437
GRT R N+G +SFV+ E +N G F+ Q L+ D N M + I++
Sbjct: 621 GRTCRLNNKGKCISFVN--E---LNYGEK-EFL----QKLIEDKNICTMIKKNIQYNIVE 670
Query: 438 PYQFNLD 444
Y++ ++
Sbjct: 671 KYRYRVE 677
Score = 129 (50.5 bits), Expect = 2.7e-37, Sum P(3) = 2.7e-37
Identities = 25/81 (30%), Positives = 44/81 (54%)
Query: 241 AHYHILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSEL 300
A Y++ +E K LY L+K+ ++ K+IIF T+ YK+K++L +S+ +LN
Sbjct: 377 AFYYVYKEELIKYIYLYNLIKIKIIPYKSIIFTTTIHDAYKIKIFLTYLNVSSSILNPNH 436
Query: 301 PAKARCHAVYQFNQGLYDVII 321
P R + + FN + +I
Sbjct: 437 PILIRQNIISAFNNSKFHFLI 457
Score = 43 (20.2 bits), Expect = 7.6e-19, Sum P(2) = 7.6e-19
Identities = 13/55 (23%), Positives = 31/55 (56%)
Query: 249 EDEK-ATILYTLLKLNLVQGKTIIFVNTVDKCY--KLKLYLEQFKISTCVLNSEL 300
ED+ T++ ++ N+V+ +T++KC K+KL++++ + + + EL
Sbjct: 652 EDKNICTMIKKNIQYNIVEKYRYRVESTLNKCTNKKIKLFIQKEILYQSLKSKEL 706
>UNIPROTKB|A4QYM6 [details] [associations]
symbol:DRS1 "ATP-dependent RNA helicase DRS1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
EMBL:CM001233 GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K13181 RefSeq:XP_003712922.1
ProteinModelPortal:A4QYM6 STRING:A4QYM6 GeneID:2683645
KEGG:mgr:MGG_07718 OrthoDB:EOG4B01XM Uniprot:A4QYM6
Length = 790
Score = 352 (129.0 bits), Expect = 2.7e-37, Sum P(2) = 2.7e-37
Identities = 93/327 (28%), Positives = 169/327 (51%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ + +G+ +PT IQ + IP+ L KDV+ A TGSGKT AF +P+++++ L + +V
Sbjct: 267 LRGLTSVGFAKPTPIQSKTIPIALMGKDVVGGAVTGSGKTAAFVVPILERL--LYRPKKV 324
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVK-CVDISEQVDVSVQEPLLVERPDIVV 148
++ ++L+P++EL Q H +L D+K C+ + + + VQE L RPD+++
Sbjct: 325 PTSRVVILAPTRELAIQCHAVATKLASHT--DIKFCLAVGG-LSLKVQESELRLRPDVII 381
Query: 149 ATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
ATP R + H++ ++EI+++DEAD + G+ D++ +L LPK Q +L SAT
Sbjct: 382 ATPGRFIDHMRNSASFAVDTVEILVLDEADRMLEDGFADELNEILTTLPKSRQTMLFSAT 441
Query: 209 LSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHIL--AQEDEKATILYTLLKLNLVQ 266
++ V +L + L PV L ++ V+ + L +E+++ L L K NL
Sbjct: 442 MTSSVDNLIRVGLNKPVRLMVDSQKKTVVTLTQEFVRLRPGREEKRMGYLVYLCK-NLYT 500
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD-- 324
+ IIF + ++ +S L+ + R +V F G ++A+D
Sbjct: 501 ERVIIFFRQKKIAHHARIIFGLLGLSCAELHGSMSQIQRIQSVEAFRDGKVSFLLATDLA 560
Query: 325 EKALETPQINSTNNRKRKRDKESGVSR 351
+ L+ +++ N + + E V R
Sbjct: 561 SRGLDIKGVDTVINYEAPQSLEIYVHR 587
Score = 115 (45.5 bits), Expect = 2.7e-37, Sum P(2) = 2.7e-37
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVS 394
SRG+D + V VIN++ P ++ Y+HR GRTAR GTA++ +
Sbjct: 561 SRGLDIKGVDTVINYEAPQSLEIYVHRVGRTARAGRSGTAITLAA 605
>UNIPROTKB|Q5ZM36 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0006417 GO:GO:0000184 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0051028 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025 CTD:9775
OrthoDB:EOG4229JV EMBL:AJ719548 IPI:IPI00588271
RefSeq:NP_001025820.1 UniGene:Gga.7844 ProteinModelPortal:Q5ZM36
SMR:Q5ZM36 PRIDE:Q5ZM36 GeneID:416704 KEGG:gga:416704
InParanoid:Q5ZM36 NextBio:20820126 Uniprot:Q5ZM36
Length = 412
Score = 319 (117.4 bits), Expect = 2.8e-37, Sum P(2) = 2.8e-37
Identities = 85/326 (26%), Positives = 174/326 (53%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ I G+ +P+ IQ+RAI I++ +DV+ ++++G+GKT F+I ++Q + QV
Sbjct: 51 LRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCL-----DIQV 105
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ET+AL+L+P++EL Q+ K + L + +V+C +V L +V
Sbjct: 106 RETQALILAPTRELAVQIQKGL--LALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAG 163
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R ++ ++L ++ ++++++DEAD + + G+++ + V ++LP Q +L SATL
Sbjct: 164 TPGRVFDMIRRRSLRTRA-IKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATL 222
Query: 210 SEDVLSLKHLILRNPV--ILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
++L + + + +P+ ++K +E + + Q + + +E+ K L L L
Sbjct: 223 PHEILEMTNKFMTDPIRILVKRDELTLEGIKQF--FVAVEREEWKFDTLCDLYD-TLTIT 279
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD--E 325
+ +IF NT K L + + + ++ ++P K R + +F G V+I++D
Sbjct: 280 QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWA 339
Query: 326 KALETPQINSTNNRKRKRDKESGVSR 351
+ L+ PQ++ N ++E + R
Sbjct: 340 RGLDVPQVSLIINYDLPNNRELYIHR 365
Score = 106 (42.4 bits), Expect = 2.8e-37, Sum P(2) = 2.8e-37
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND 403
+RG+D VS +IN+D P + + YIHR GR+ R +G A++FV + ++ D
Sbjct: 339 ARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRD 392
Score = 46 (21.3 bits), Expect = 5.5e-31, Sum P(2) = 5.5e-31
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 404 GTALSFVSLREQDLMNDVNEYLMTNLHE 431
G A++FV + ++ D+ +Y T + E
Sbjct: 376 GVAINFVKNDDIRILRDIEQYYSTQIDE 403
>UNIPROTKB|Q2NL22 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9913 "Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045727 "positive regulation of translation"
evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0000184
GO:GO:0008380 GO:GO:0017148 GO:GO:0016607 GO:GO:0006397
GO:GO:0045727 GO:GO:0051028 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004
GO:GO:0035145 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008143 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 KO:K13025 EMBL:BC111184
IPI:IPI00708766 RefSeq:NP_001039653.1 UniGene:Bt.3377
ProteinModelPortal:Q2NL22 SMR:Q2NL22 PRIDE:Q2NL22
Ensembl:ENSBTAT00000021327 GeneID:515145 KEGG:bta:515145 CTD:9775
InParanoid:Q2NL22 OMA:LALGDFM OrthoDB:EOG4229JV NextBio:20871682
Uniprot:Q2NL22
Length = 411
Score = 319 (117.4 bits), Expect = 2.8e-37, Sum P(2) = 2.8e-37
Identities = 85/326 (26%), Positives = 174/326 (53%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ I G+ +P+ IQ+RAI I++ +DV+ ++++G+GKT F+I ++Q + QV
Sbjct: 50 LRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCL-----DIQV 104
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ET+AL+L+P++EL Q+ K + L + +V+C +V L +V
Sbjct: 105 RETQALILAPTRELAVQIQKGL--LALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAG 162
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R ++ ++L ++ ++++++DEAD + + G+++ + V ++LP Q +L SATL
Sbjct: 163 TPGRVFDMIRRRSLRTRA-IKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATL 221
Query: 210 SEDVLSLKHLILRNPV--ILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
++L + + + +P+ ++K +E + + Q + + +E+ K L L L
Sbjct: 222 PHEILEMTNKFMTDPIRILVKRDELTLEGIKQF--FVAVEREEWKFDTLCDLYD-TLTIT 278
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD--E 325
+ +IF NT K L + + + ++ ++P K R + +F G V+I++D
Sbjct: 279 QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWA 338
Query: 326 KALETPQINSTNNRKRKRDKESGVSR 351
+ L+ PQ++ N ++E + R
Sbjct: 339 RGLDVPQVSLIINYDLPNNRELYIHR 364
Score = 106 (42.4 bits), Expect = 2.8e-37, Sum P(2) = 2.8e-37
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND 403
+RG+D VS +IN+D P + + YIHR GR+ R +G A++FV + ++ D
Sbjct: 338 ARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRD 391
Score = 46 (21.3 bits), Expect = 5.5e-31, Sum P(2) = 5.5e-31
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 404 GTALSFVSLREQDLMNDVNEYLMTNLHE 431
G A++FV + ++ D+ +Y T + E
Sbjct: 375 GVAINFVKNDDIRILRDIEQYYSTQIDE 402
>UNIPROTKB|E2RDZ4 [details] [associations]
symbol:EIF4A3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0035145 "exon-exon junction complex" evidence=IEA] [GO:0017148
"negative regulation of translation" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0045727 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0035145 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008143
GeneTree:ENSGT00530000062880 KO:K13025 OMA:EDWKFDT CTD:9775
EMBL:AAEX03006203 RefSeq:XP_533130.2 Ensembl:ENSCAFT00000009055
GeneID:475922 KEGG:cfa:475922 NextBio:20851666 Uniprot:E2RDZ4
Length = 411
Score = 319 (117.4 bits), Expect = 2.8e-37, Sum P(2) = 2.8e-37
Identities = 85/326 (26%), Positives = 174/326 (53%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ I G+ +P+ IQ+RAI I++ +DV+ ++++G+GKT F+I ++Q + QV
Sbjct: 50 LRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCL-----DIQV 104
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ET+AL+L+P++EL Q+ K + L + +V+C +V L +V
Sbjct: 105 RETQALILAPTRELAVQIQKGL--LALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAG 162
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R ++ ++L ++ ++++++DEAD + + G+++ + V ++LP Q +L SATL
Sbjct: 163 TPGRVFDMIRRRSLRTRA-IKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATL 221
Query: 210 SEDVLSLKHLILRNPV--ILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
++L + + + +P+ ++K +E + + Q + + +E+ K L L L
Sbjct: 222 PHEILEMTNKFMTDPIRILVKRDELTLEGIKQF--FVAVEREEWKFDTLCDLYD-TLTIT 278
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD--E 325
+ +IF NT K L + + + ++ ++P K R + +F G V+I++D
Sbjct: 279 QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWA 338
Query: 326 KALETPQINSTNNRKRKRDKESGVSR 351
+ L+ PQ++ N ++E + R
Sbjct: 339 RGLDVPQVSLIINYDLPNNRELYIHR 364
Score = 106 (42.4 bits), Expect = 2.8e-37, Sum P(2) = 2.8e-37
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND 403
+RG+D VS +IN+D P + + YIHR GR+ R +G A++FV + ++ D
Sbjct: 338 ARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRD 391
Score = 46 (21.3 bits), Expect = 5.5e-31, Sum P(2) = 5.5e-31
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 404 GTALSFVSLREQDLMNDVNEYLMTNLHE 431
G A++FV + ++ D+ +Y T + E
Sbjct: 375 GVAINFVKNDDIRILRDIEQYYSTQIDE 402
>UNIPROTKB|P38919 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9606 "Homo sapiens" [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0048026 "positive
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0045727 "positive regulation
of translation" evidence=IMP] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0035145 "exon-exon junction complex"
evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IMP;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0017148 "negative
regulation of translation" evidence=IDA] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0019221
"cytokine-mediated signaling pathway" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005829
GO:GO:0005524 Reactome:REACT_6900 GO:GO:0000184 GO:GO:0017148
GO:GO:0016607 GO:GO:0019221 TCDB:3.A.18.1.1 EMBL:CH471099
GO:GO:0045727 GO:GO:0051028 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 GO:GO:0000289 EMBL:AC087741 GO:GO:0035145 PDB:2HYI
PDB:2J0Q PDB:2J0S PDB:2J0U PDB:2XB2 PDB:3EX7 PDBsum:2HYI
PDBsum:2J0Q PDBsum:2J0S PDBsum:2J0U PDBsum:2XB2 PDBsum:3EX7
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0008143 HOVERGEN:HBG107989 KO:K13025
OMA:EDWKFDT CTD:9775 OrthoDB:EOG4229JV EMBL:X79538 EMBL:D21853
EMBL:AK290608 EMBL:CR456750 EMBL:BC003662 EMBL:BC004386
EMBL:BC011151 IPI:IPI00009328 PIR:S45142 RefSeq:NP_055555.1
UniGene:Hs.389649 PDB:2HXY PDBsum:2HXY ProteinModelPortal:P38919
SMR:P38919 DIP:DIP-33218N IntAct:P38919 MINT:MINT-1460615
STRING:P38919 PhosphoSite:P38919 DMDM:20532400
REPRODUCTION-2DPAGE:IPI00009328 PaxDb:P38919 PeptideAtlas:P38919
PRIDE:P38919 DNASU:9775 Ensembl:ENST00000269349 GeneID:9775
KEGG:hsa:9775 UCSC:uc002jxs.3 GeneCards:GC17M078109 HGNC:HGNC:18683
HPA:HPA021878 MIM:608546 neXtProt:NX_P38919 PharmGKB:PA162384945
InParanoid:P38919 PhylomeDB:P38919 ChiTaRS:EIF4A3
EvolutionaryTrace:P38919 GenomeRNAi:9775 NextBio:36802 Bgee:P38919
CleanEx:HS_EIF4A3 Genevestigator:P38919 GermOnline:ENSG00000141543
Uniprot:P38919
Length = 411
Score = 319 (117.4 bits), Expect = 2.8e-37, Sum P(2) = 2.8e-37
Identities = 85/326 (26%), Positives = 174/326 (53%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ I G+ +P+ IQ+RAI I++ +DV+ ++++G+GKT F+I ++Q + QV
Sbjct: 50 LRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCL-----DIQV 104
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ET+AL+L+P++EL Q+ K + L + +V+C +V L +V
Sbjct: 105 RETQALILAPTRELAVQIQKGL--LALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAG 162
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R ++ ++L ++ ++++++DEAD + + G+++ + V ++LP Q +L SATL
Sbjct: 163 TPGRVFDMIRRRSLRTRA-IKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATL 221
Query: 210 SEDVLSLKHLILRNPV--ILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
++L + + + +P+ ++K +E + + Q + + +E+ K L L L
Sbjct: 222 PHEILEMTNKFMTDPIRILVKRDELTLEGIKQF--FVAVEREEWKFDTLCDLYD-TLTIT 278
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD--E 325
+ +IF NT K L + + + ++ ++P K R + +F G V+I++D
Sbjct: 279 QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWA 338
Query: 326 KALETPQINSTNNRKRKRDKESGVSR 351
+ L+ PQ++ N ++E + R
Sbjct: 339 RGLDVPQVSLIINYDLPNNRELYIHR 364
Score = 106 (42.4 bits), Expect = 2.8e-37, Sum P(2) = 2.8e-37
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND 403
+RG+D VS +IN+D P + + YIHR GR+ R +G A++FV + ++ D
Sbjct: 338 ARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRD 391
Score = 46 (21.3 bits), Expect = 5.5e-31, Sum P(2) = 5.5e-31
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 404 GTALSFVSLREQDLMNDVNEYLMTNLHE 431
G A++FV + ++ D+ +Y T + E
Sbjct: 375 GVAINFVKNDDIRILRDIEQYYSTQIDE 402
>UNIPROTKB|A6M931 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0005681 GO:GO:0003723
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 KO:K13025 CTD:9775
OrthoDB:EOG4229JV EMBL:DQ351286 RefSeq:NP_001093663.1
UniGene:Ssc.869 ProteinModelPortal:A6M931 SMR:A6M931 PRIDE:A6M931
GeneID:100101926 KEGG:ssc:100101926 Uniprot:A6M931
Length = 411
Score = 319 (117.4 bits), Expect = 2.8e-37, Sum P(2) = 2.8e-37
Identities = 85/326 (26%), Positives = 174/326 (53%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ I G+ +P+ IQ+RAI I++ +DV+ ++++G+GKT F+I ++Q + QV
Sbjct: 50 LRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCL-----DIQV 104
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ET+AL+L+P++EL Q+ K + L + +V+C +V L +V
Sbjct: 105 RETQALILAPTRELAVQIQKGL--LALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAG 162
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R ++ ++L ++ ++++++DEAD + + G+++ + V ++LP Q +L SATL
Sbjct: 163 TPGRVFDMIRRRSLRTRA-IKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATL 221
Query: 210 SEDVLSLKHLILRNPV--ILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
++L + + + +P+ ++K +E + + Q + + +E+ K L L L
Sbjct: 222 PHEILEMTNKFMTDPIRILVKRDELTLEGIKQF--FVAVEREEWKFDTLCDLYD-TLTIT 278
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD--E 325
+ +IF NT K L + + + ++ ++P K R + +F G V+I++D
Sbjct: 279 QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWA 338
Query: 326 KALETPQINSTNNRKRKRDKESGVSR 351
+ L+ PQ++ N ++E + R
Sbjct: 339 RGLDVPQVSLIINYDLPNNRELYIHR 364
Score = 106 (42.4 bits), Expect = 2.8e-37, Sum P(2) = 2.8e-37
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND 403
+RG+D VS +IN+D P + + YIHR GR+ R +G A++FV + ++ D
Sbjct: 338 ARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRD 391
Score = 46 (21.3 bits), Expect = 5.5e-31, Sum P(2) = 5.5e-31
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 404 GTALSFVSLREQDLMNDVNEYLMTNLHE 431
G A++FV + ++ D+ +Y T + E
Sbjct: 375 GVAINFVKNDDIRILRDIEQYYSTQIDE 402
>RGD|1591139 [details] [associations]
symbol:Eif4a3 "eukaryotic translation initiation factor 4A,
isoform 3" species:10116 "Rattus norvegicus" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0035145 "exon-exon junction complex" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1591139 GO:GO:0005524
GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0005681 GO:GO:0003723
EMBL:CH473948 GO:GO:0051028 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P60842 KO:K13025 CTD:9775 EMBL:BC105875
IPI:IPI00656385 RefSeq:NP_001093628.1 UniGene:Rn.202617
ProteinModelPortal:Q3B8Q2 SMR:Q3B8Q2 PRIDE:Q3B8Q2 GeneID:688288
KEGG:rno:688288 NextBio:736113 Genevestigator:Q3B8Q2 Uniprot:Q3B8Q2
Length = 411
Score = 319 (117.4 bits), Expect = 2.8e-37, Sum P(2) = 2.8e-37
Identities = 85/326 (26%), Positives = 174/326 (53%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ I G+ +P+ IQ+RAI I++ +DV+ ++++G+GKT F+I ++Q + QV
Sbjct: 50 LRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCL-----DIQV 104
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ET+AL+L+P++EL Q+ K + L + +V+C +V L +V
Sbjct: 105 RETQALILAPTRELAVQIQKGL--LALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAG 162
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R ++ ++L ++ ++++++DEAD + + G+++ + V ++LP Q +L SATL
Sbjct: 163 TPGRVFDMIRRRSLRTRA-IKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATL 221
Query: 210 SEDVLSLKHLILRNPV--ILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
++L + + + +P+ ++K +E + + Q + + +E+ K L L L
Sbjct: 222 PHEILEMTNKFMTDPIRILVKRDELTLEGIKQF--FVAVEREEWKFDTLCDLYD-TLTIT 278
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD--E 325
+ +IF NT K L + + + ++ ++P K R + +F G V+I++D
Sbjct: 279 QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWA 338
Query: 326 KALETPQINSTNNRKRKRDKESGVSR 351
+ L+ PQ++ N ++E + R
Sbjct: 339 RGLDVPQVSLIINYDLPNNRELYIHR 364
Score = 106 (42.4 bits), Expect = 2.8e-37, Sum P(2) = 2.8e-37
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND 403
+RG+D VS +IN+D P + + YIHR GR+ R +G A++FV + ++ D
Sbjct: 338 ARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRD 391
Score = 46 (21.3 bits), Expect = 5.5e-31, Sum P(2) = 5.5e-31
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 404 GTALSFVSLREQDLMNDVNEYLMTNLHE 431
G A++FV + ++ D+ +Y T + E
Sbjct: 375 GVAINFVKNDDIRILRDIEQYYSTQIDE 402
>WB|WBGene00018007 [details] [associations]
symbol:F33D11.10 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0051301
"cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0018996 "molting
cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0018996 GO:GO:0003676
GO:GO:0000910 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GeneTree:ENSGT00530000062880 GO:GO:0001703 KO:K13025 OMA:IFGKQPF
EMBL:FO080753 PIR:T32773 RefSeq:NP_491703.1
ProteinModelPortal:O44781 SMR:O44781 DIP:DIP-27243N IntAct:O44781
MINT:MINT-1047941 STRING:O44781 PaxDb:O44781
EnsemblMetazoa:F33D11.10.1 EnsemblMetazoa:F33D11.10.2 GeneID:172258
KEGG:cel:CELE_F33D11.10 UCSC:F33D11.10.1 CTD:172258
WormBase:F33D11.10 InParanoid:O44781 NextBio:874709 Uniprot:O44781
Length = 399
Score = 316 (116.3 bits), Expect = 3.1e-37, Sum P(2) = 3.1e-37
Identities = 84/326 (25%), Positives = 173/326 (53%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ I G+ +P+ IQ+RA+P IL+ +DV+ +A++G+GKT F+I ++Q + QV
Sbjct: 38 LRGIYAYGFEKPSAIQQRAVPAILKARDVIAQAQSGTGKTATFSISVLQSL-----DTQV 92
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ET+AL+LSP++EL Q+ K + L + +V+C ++ L +V
Sbjct: 93 RETQALILSPTRELAVQIQKVV--LALGDYMNVQCHACIGGTNLGEDIRKLDYGQHVVSG 150
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R ++ + L ++ ++++++DEAD + + G+++ + + ++LP Q +L SATL
Sbjct: 151 TPGRVFDMIRRRNLRTRA-IKLLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVVLLSATL 209
Query: 210 SEDVLSLKHLILRNPV--ILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
++L + + +P+ ++K +E + + Q + + +E+ K L L L
Sbjct: 210 PHEILEMTSKFMTDPIRILVKRDELTLEGIKQF--FVAVDREEWKFDTLIDLYD-TLTIT 266
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD--E 325
+ ++F NT K L +++ + ++ ++ K R + +F G V+I++D
Sbjct: 267 QAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLISTDVWA 326
Query: 326 KALETPQINSTNNRKRKRDKESGVSR 351
+ L+ PQ++ N ++E + R
Sbjct: 327 RGLDVPQVSLVINYDLPNNRELYIHR 352
Score = 109 (43.4 bits), Expect = 3.1e-37, Sum P(2) = 3.1e-37
Identities = 22/54 (40%), Positives = 34/54 (62%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND 403
+RG+D VS VIN+D P + + YIHR GR+ R +G A++FV + ++ D
Sbjct: 326 ARGLDVPQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKQDDVRILRD 379
Score = 48 (22.0 bits), Expect = 7.6e-31, Sum P(2) = 7.6e-31
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 404 GTALSFVSLREQDLMNDVNEYLMTNLHE 431
G A++FV + ++ D+ +Y T + E
Sbjct: 363 GVAINFVKQDDVRILRDIEQYYSTQIDE 390
>UNIPROTKB|Q9Y6V7 [details] [associations]
symbol:DDX49 "Probable ATP-dependent RNA helicase DDX49"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AC002985 KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ
HOVERGEN:HBG100512 EMBL:AK223294 EMBL:BC002674 IPI:IPI00003739
RefSeq:NP_061943.2 UniGene:Hs.143187 ProteinModelPortal:Q9Y6V7
SMR:Q9Y6V7 IntAct:Q9Y6V7 STRING:Q9Y6V7 PhosphoSite:Q9Y6V7
DMDM:74753527 PaxDb:Q9Y6V7 PRIDE:Q9Y6V7 DNASU:54555
Ensembl:ENST00000247003 GeneID:54555 KEGG:hsa:54555 UCSC:uc002nkq.2
CTD:54555 GeneCards:GC19P019030 HGNC:HGNC:18684 neXtProt:NX_Q9Y6V7
PharmGKB:PA134956171 InParanoid:Q9Y6V7 OrthoDB:EOG4C87SC
PhylomeDB:Q9Y6V7 GenomeRNAi:54555 NextBio:57032 ArrayExpress:Q9Y6V7
Bgee:Q9Y6V7 CleanEx:HS_DDX49 Genevestigator:Q9Y6V7
GermOnline:ENSG00000105671 Uniprot:Q9Y6V7
Length = 483
Score = 345 (126.5 bits), Expect = 3.1e-37, Sum P(2) = 3.1e-37
Identities = 97/314 (30%), Positives = 162/314 (51%)
Query: 35 KLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKA 94
+LG +PT +Q IP IL+ +D L A+TGSGKT AF +P++QK+ +
Sbjct: 19 QLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKL-----SEDPYGIFC 73
Query: 95 LVLSPSKELCNQLHKNIQELTMKCS-RDVKCVDISEQVDVSVQEPLLVERPDIVVATPAR 153
LVL+P++EL Q+ + + L +D C+ + +D+ Q L +P +V+ATP R
Sbjct: 74 LVLTPTRELAYQIAEQFRVLGKPLGLKD--CIIVGG-MDMVAQALELSRKPHVVIATPGR 130
Query: 154 ALAHLKAK-TLDLKSSLEIVIIDEADLVFSFGYED---DMKAVLKFLPKLYQAILASATL 209
HL++ T +K + +++DEAD + G D D++A+L +P Q +L SATL
Sbjct: 131 LADHLRSSNTFSIKK-IRFLVMDEADRLLEQGCTDFTVDLEAILAAVPARRQTLLFSATL 189
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
++ + L+ L P + + P ++ V QL ++L E K L L++ + +
Sbjct: 190 TDTLRELQGLATNQPFFWEAQAP-VSTVEQLDQRYLLVPEKVKDAYLVHLIQRFQDEHED 248
Query: 270 ---IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD-- 324
IIF NT C L + L +F T L+S + K R A+ +F +Y ++IA+D
Sbjct: 249 WSIIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKERFAALAKFKSSIYRILIATDVA 308
Query: 325 EKALETPQINSTNN 338
+ L+ P + N
Sbjct: 309 SRGLDIPTVQVVIN 322
Score = 98 (39.6 bits), Expect = 3.1e-37, Sum P(2) = 3.1e-37
Identities = 22/45 (48%), Positives = 28/45 (62%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVS 394
SRG+D V VIN + P + YIHR GRTAR QG A++ V+
Sbjct: 309 SRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVT 353
>UNIPROTKB|F1S7D9 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 CTD:54555 EMBL:CU640483
RefSeq:XP_003123587.1 UniGene:Ssc.79767 Ensembl:ENSSSCT00000025399
GeneID:100526038 KEGG:ssc:100526038 Uniprot:F1S7D9
Length = 483
Score = 344 (126.2 bits), Expect = 3.7e-37, Sum P(2) = 3.7e-37
Identities = 98/315 (31%), Positives = 160/315 (50%)
Query: 35 KLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKA 94
+LG +PT +Q IP IL+ +D L A+TGSGKT AF +P++QK+ +
Sbjct: 19 QLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKL-----SEDPYGIFC 73
Query: 95 LVLSPSKELCNQLHKNIQELTMKCS-RDVKCVDISEQVDVSVQEPLLVERPDIVVATPAR 153
LVL+P++EL Q+ + + L +D C+ + +D+ Q L +P +V+ATP R
Sbjct: 74 LVLTPTRELAYQIAEQFRVLGKPLGLKD--CIIVGG-MDMVAQALELSRKPHVVIATPGR 130
Query: 154 ALAHLKAK-TLDLKSSLEIVIIDEADLVFSFGYED---DMKAVLKFLPKLYQAILASATL 209
HL++ T +K + +++DEAD + G D D++A+L +P Q +L SATL
Sbjct: 131 LADHLRSSNTFSIKK-IRFLVMDEADRLLEQGCTDFTVDLEAILAAVPARRQTLLFSATL 189
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG-- 267
++ + L+ L P + + P + V QL ++L E K L L++ N
Sbjct: 190 TDTLRELQSLATNQPFFWEAQAP-VRTVEQLDQRYLLVPEKVKDAYLVHLIQ-NFQDEHE 247
Query: 268 --KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD- 324
IIF NT C L + L +F T L+S + K R A+ +F +Y ++IA+D
Sbjct: 248 DWSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSSIYRILIATDV 307
Query: 325 -EKALETPQINSTNN 338
+ L+ P + N
Sbjct: 308 ASRGLDIPTVQVVIN 322
Score = 99 (39.9 bits), Expect = 3.7e-37, Sum P(2) = 3.7e-37
Identities = 40/126 (31%), Positives = 55/126 (43%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSF 409
SRG+D V VIN + P + YIHR GRTAR QG A++ V+ + L++
Sbjct: 309 SRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLVHAIEEQIK 368
Query: 410 VSLREQDLMN-DVNEYL-MTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRSNYFEDNPT 467
L E + +V + L N+ + IK N DE K R + E
Sbjct: 369 KKLEEFSVEEAEVLQILTQVNVVRRECEIKLEAANFDEKKEINKR-----KQMILEGKDP 423
Query: 468 DLETLR 473
DLE R
Sbjct: 424 DLEAKR 429
>UNIPROTKB|Q8EE19 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 319 (117.4 bits), Expect = 4.2e-37, Sum P(2) = 4.2e-37
Identities = 83/306 (27%), Positives = 161/306 (52%)
Query: 19 LPFT-FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMI 77
+PF+ L ++A+ +LG+ PT IQ +AIP IL K+VL A+TG+GKT +F +P++
Sbjct: 1 MPFSQLGLHSALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLL 60
Query: 78 QKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQE 137
+ + + + + ++++L+P++EL Q+ +NI + + + + VD + Q+
Sbjct: 61 HRFADAPKI-RPKRVRSIILTPTRELALQVEQNINQYAKYLP--LTAMAMYGGVDAAPQK 117
Query: 138 PLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLP 197
L+E D++VATP R L + + + ++++DEAD + G+ +D+ +++ LP
Sbjct: 118 KRLIEGVDLLVATPGRLLDMYTQRAIRF-DEVSVLVLDEADRMLDMGFIEDINNIIEKLP 176
Query: 198 KLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILY 257
+ Q +L SATLS+ V +L + + + +++ A +Q+ + +D K+ +L
Sbjct: 177 EQRQNLLFSATLSKQVKALAKTAIPDAIEIEISRKNAAS-TQIDQWLTTVDKDRKSALLS 235
Query: 258 TLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLY 317
L+K N + +IF+ T KL LE+ I +S R + F G
Sbjct: 236 HLIKENN-WAQALIFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAIREQLLIDFKAGKV 294
Query: 318 DVIIAS 323
++A+
Sbjct: 295 PFLVAT 300
Score = 135 (52.6 bits), Expect = 4.2e-37, Sum P(2) = 4.2e-37
Identities = 29/54 (53%), Positives = 34/54 (62%)
Query: 349 VSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMN 402
VSRGID + VIN+D P + YIHR GRT R NQG A+SFVS + D N
Sbjct: 303 VSRGIDIDALERVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVS--KDDFRN 354
>TIGR_CMR|SO_2571 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 319 (117.4 bits), Expect = 4.2e-37, Sum P(2) = 4.2e-37
Identities = 83/306 (27%), Positives = 161/306 (52%)
Query: 19 LPFT-FTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMI 77
+PF+ L ++A+ +LG+ PT IQ +AIP IL K+VL A+TG+GKT +F +P++
Sbjct: 1 MPFSQLGLHSALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLL 60
Query: 78 QKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQE 137
+ + + + + ++++L+P++EL Q+ +NI + + + + VD + Q+
Sbjct: 61 HRFADAPKI-RPKRVRSIILTPTRELALQVEQNINQYAKYLP--LTAMAMYGGVDAAPQK 117
Query: 138 PLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLP 197
L+E D++VATP R L + + + ++++DEAD + G+ +D+ +++ LP
Sbjct: 118 KRLIEGVDLLVATPGRLLDMYTQRAIRF-DEVSVLVLDEADRMLDMGFIEDINNIIEKLP 176
Query: 198 KLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILY 257
+ Q +L SATLS+ V +L + + + +++ A +Q+ + +D K+ +L
Sbjct: 177 EQRQNLLFSATLSKQVKALAKTAIPDAIEIEISRKNAAS-TQIDQWLTTVDKDRKSALLS 235
Query: 258 TLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLY 317
L+K N + +IF+ T KL LE+ I +S R + F G
Sbjct: 236 HLIKENN-WAQALIFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAIREQLLIDFKAGKV 294
Query: 318 DVIIAS 323
++A+
Sbjct: 295 PFLVAT 300
Score = 135 (52.6 bits), Expect = 4.2e-37, Sum P(2) = 4.2e-37
Identities = 29/54 (53%), Positives = 34/54 (62%)
Query: 349 VSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMN 402
VSRGID + VIN+D P + YIHR GRT R NQG A+SFVS + D N
Sbjct: 303 VSRGIDIDALERVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVS--KDDFRN 354
>UNIPROTKB|E1C187 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 OMA:TRTFTDH EMBL:AADN02019007
IPI:IPI00822640 Ensembl:ENSGALT00000011297 ArrayExpress:E1C187
Uniprot:E1C187
Length = 759
Score = 350 (128.3 bits), Expect = 5.2e-37, Sum P(2) = 5.2e-37
Identities = 94/302 (31%), Positives = 161/302 (53%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGS-GKTGAFAIPMIQKIINLKQTAQ 88
L+AI LG+ +PT IQ+ IP+ L KD+ A TG+ GKT AF +P+++++I + A
Sbjct: 192 LKAITALGFKQPTPIQKACIPVGLLGKDICACAATGTVGKTAAFILPVLERLIYKPRQAP 251
Query: 89 VQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVV 148
+ T+ LVL P++EL Q+H ++L + S C+ + +DV QE L PDI++
Sbjct: 252 I--TRVLVLVPTRELGIQVHSVTKQLA-QFSSVTTCLAVGG-LDVKTQEAALRSGPDILI 307
Query: 149 ATPARALAHL-KAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
ATP R + HL + L SS+E++I+DEAD + +E+ MK +++ + Q +L SA
Sbjct: 308 ATPGRLIDHLHNCPSFHL-SSVEVLILDEADRMLDEYFEEQMKEIIRLCSRHRQTMLFSA 366
Query: 208 TLSEDVLSLKHLILRNPV-ILKLEEPAIAPVSQLAHYHILA-QEDEKATILYTLLKLNLV 265
T++E+V L + L+NP I +AP + I +E ++ I+ LL
Sbjct: 367 TMTEEVKDLASVSLKNPTRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVSALLTRTFP 426
Query: 266 QGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE 325
++F T + +++ + L + L+ L R A+ +F D+++A+D
Sbjct: 427 D-HVMLFTQTKKQAHRMHILLGLMGLRVGELHGNLSQAQRLEALRRFKDEQIDILVATDV 485
Query: 326 KA 327
A
Sbjct: 486 AA 487
Score = 114 (45.2 bits), Expect = 5.2e-37, Sum P(2) = 5.2e-37
Identities = 30/91 (32%), Positives = 48/91 (52%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND--GTAL 407
+RG+D + V VINF P + Y+HR GRTAR G ++S V E+ ++ + A
Sbjct: 487 ARGLDIEGVKTVINFTMPNTTKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKAAK 546
Query: 408 SFVSLR--EQDLMNDVNEYLMTNLHEDDFII 436
+ V R QD++ E + NL +D + +
Sbjct: 547 TPVKARILPQDVILKFREKI-ENLEKDVYAV 576
>ZFIN|ZDB-GENE-031001-8 [details] [associations]
symbol:ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
27" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031001-8 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 CTD:55661 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 EMBL:AY648729 IPI:IPI00501087
RefSeq:NP_001002869.1 UniGene:Dr.76523 ProteinModelPortal:Q6DRN0
PRIDE:Q6DRN0 GeneID:378844 KEGG:dre:378844 InParanoid:Q6DRN0
NextBio:20813841 ArrayExpress:Q6DRN0 Bgee:Q6DRN0 Uniprot:Q6DRN0
Length = 776
Score = 351 (128.6 bits), Expect = 7.1e-37, Sum P(2) = 7.1e-37
Identities = 91/301 (30%), Positives = 161/301 (53%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AI+ +G+ +PT IQ+ +P+ L KD+ A TG+GKT AF +P+++++I + QV
Sbjct: 213 LKAISTMGFKQPTPIQKACVPVGLLGKDICACAATGTGKTAAFMLPVLERLIYKPRETQV 272
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T+ LVL P++EL Q+H ++L + C+ + +D+ QE L PD+++A
Sbjct: 273 --TRVLVLVPTRELGIQVHTVARQLAQFTTIST-CLAVGG-LDLKSQEAALRAGPDVLIA 328
Query: 150 TPARALAHL-KAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
TP R + HL + +L S +EI+I+DEAD + +E+ MK +++ Q +L SAT
Sbjct: 329 TPGRLIDHLHNTPSFEL-SQIEILILDEADRMLDEYFEEQMKEIIRMCAYQRQTMLFSAT 387
Query: 209 LSEDVLSLKHLILRNPV-ILKLEEPAIAPVSQLAHYHILA-QEDEKATILYTLLKLNLVQ 266
+SE+V L + L+ PV I +AP + I +E ++ I+ LL Q
Sbjct: 388 MSEEVKDLASVSLKQPVRIFVNSNTDVAPYLRQEFVRIRPNKEGDREAIVAALLTRTF-Q 446
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
++F T + +++ + L + L+ L R ++ +F D+++A+D
Sbjct: 447 DHVMLFTQTKKQAHRMHILLGLMGLKVGELHGNLSQTQRLESLRRFKDEQIDILVATDVA 506
Query: 327 A 327
A
Sbjct: 507 A 507
Score = 112 (44.5 bits), Expect = 7.1e-37, Sum P(2) = 7.1e-37
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND 403
+RG+D + V VINF P ++ Y+HR GRTAR G ++S V E+ ++ +
Sbjct: 507 ARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGKVGRSVSLVGETERKMLKE 560
Score = 46 (21.3 bits), Expect = 5.9e-30, Sum P(2) = 5.9e-30
Identities = 16/60 (26%), Positives = 26/60 (43%)
Query: 295 VLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGID 354
VL E K H+ Q + + + DEK L P+ N +RK+D+ + + D
Sbjct: 596 VLCLEKEEKEMAHSEAQISSAQKRLTKSEDEKQL--PRTWFQTNEERKKDRMAKALQDFD 653
>WB|WBGene00012059 [details] [associations]
symbol:T26G10.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0006915
GO:GO:0002119 GO:GO:0010171 GO:GO:0003723 GO:GO:0040035
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 KO:K14777
OMA:IFIPSKF EMBL:Z29115 PIR:S40731 RefSeq:NP_499069.1
ProteinModelPortal:P34580 SMR:P34580 STRING:P34580 PaxDb:P34580
EnsemblMetazoa:T26G10.1 GeneID:176321 KEGG:cel:CELE_T26G10.1
UCSC:T26G10.1 CTD:176321 WormBase:T26G10.1 InParanoid:P34580
NextBio:892086 Uniprot:P34580
Length = 489
Score = 369 (135.0 bits), Expect = 8.2e-37, Sum P(2) = 8.2e-37
Identities = 97/314 (30%), Positives = 166/314 (52%)
Query: 29 PL-QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTA 87
PL A +LGW++P+ IQ+ A+P LQ KDV+ A TGSGKTGAFAIP++Q +++
Sbjct: 54 PLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQSLLD----- 108
Query: 88 QVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
Q LVL+P++EL Q+ + + L + V + VD++ Q L RP I+
Sbjct: 109 HPQAFFCLVLTPTRELAFQIGQQFEALGSGIGL-IAAVIVGG-VDMAAQAMALARRPHII 166
Query: 148 VATPARALAHLK-AKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
VATP R + HL+ K +LK+ L+ +I+DEAD + + +E ++ +LK +P+ + L S
Sbjct: 167 VATPGRLVDHLENTKGFNLKA-LKFLIMDEADRILNMDFEVELDKILKVIPRERRTYLFS 225
Query: 207 ATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQ 266
AT+++ V L+ LR+P + + V L ++I K T L LL +
Sbjct: 226 ATMTKKVSKLERASLRDPARVSVSS-RYKTVDNLKQHYIFVPNKYKETYLVYLLNEH-AG 283
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
I+F T ++ + L Q + L+ ++ + R ++ +F ++++ +D
Sbjct: 284 NSAIVFCATCATTMQIAVMLRQLGMQAVPLHGQMSQEKRLGSLNKFKSKAREILVCTDVA 343
Query: 327 A--LETPQINSTNN 338
A L+ P ++ N
Sbjct: 344 ARGLDIPHVDMVIN 357
Score = 43 (20.2 bits), Expect = 8.2e-37, Sum P(2) = 8.2e-37
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 1 AIAKLGWLEPTLIQ 14
A +LGW++P+ IQ
Sbjct: 58 ACQRLGWMKPSKIQ 71
>MGI|MGI:2136689 [details] [associations]
symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 49"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:2136689 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 HOVERGEN:HBG100512 CTD:54555
OrthoDB:EOG4C87SC EMBL:BC099554 IPI:IPI00354271
RefSeq:NP_001020093.2 UniGene:Mm.388127 UniGene:Mm.440659
ProteinModelPortal:Q4FZF3 SMR:Q4FZF3 PhosphoSite:Q4FZF3
PRIDE:Q4FZF3 Ensembl:ENSMUST00000008004 GeneID:234374
KEGG:mmu:234374 UCSC:uc009lzu.1 InParanoid:Q4FZF3 NextBio:382139
Bgee:Q4FZF3 CleanEx:MM_DDX49 Genevestigator:Q4FZF3
GermOnline:ENSMUSG00000057788 Uniprot:Q4FZF3
Length = 480
Score = 341 (125.1 bits), Expect = 9.7e-37, Sum P(2) = 9.7e-37
Identities = 96/314 (30%), Positives = 160/314 (50%)
Query: 35 KLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKA 94
+LG +PT +Q IP IL+ +D L A+TGSGKT AF +P++QK+ +
Sbjct: 19 QLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKL-----SEDPYGIFC 73
Query: 95 LVLSPSKELCNQLHKNIQELTMKCS-RDVKCVDISEQVDVSVQEPLLVERPDIVVATPAR 153
LVL+P++EL Q+ + + L +D C+ + +D+ Q L +P +V+ATP R
Sbjct: 74 LVLTPTRELAYQIAEQFRVLGKPLGLKD--CIIVGG-MDMVAQALELSRKPHVVIATPGR 130
Query: 154 ALAHLKAK-TLDLKSSLEIVIIDEADLVFSFGYED---DMKAVLKFLPKLYQAILASATL 209
HL++ T ++K ++ +++DEAD + G D D++ +L +P Q +L SATL
Sbjct: 131 LADHLRSSNTFNMKK-IQFLVMDEADRLLEQGCTDFTTDLETILAAVPARRQTLLFSATL 189
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKL---NLVQ 266
++ + L+ L P + + + V QL ++L E K L L++ L
Sbjct: 190 TDTLKELQGLATNEPFFWEAQA-TVRTVEQLDQRYLLVPEKVKDAYLVHLVQTFQDQLED 248
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD-- 324
IIF NT C L + L +F T L+S + K R A+ +F +Y ++IA+D
Sbjct: 249 CSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSSIYRILIATDVA 308
Query: 325 EKALETPQINSTNN 338
+ L+ P + N
Sbjct: 309 SRGLDIPTVQVVIN 322
Score = 99 (39.9 bits), Expect = 9.7e-37, Sum P(2) = 9.7e-37
Identities = 23/53 (43%), Positives = 32/53 (60%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMN 402
SRG+D V VIN + P + YIHR GRTAR QG A++ V+ + L++
Sbjct: 309 SRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLLH 361
>UNIPROTKB|I3LLD5 [details] [associations]
symbol:I3LLD5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 Ensembl:ENSSSCT00000032168 OMA:SKRERIM
Uniprot:I3LLD5
Length = 401
Score = 306 (112.8 bits), Expect = 1.0e-36, Sum P(2) = 1.0e-36
Identities = 97/329 (29%), Positives = 172/329 (52%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKI-INLKQTAQ 88
L+ I G+ +P+ IQ+RAI ++ DV+ +A++G+GKT FAI ++Q+I ++LK T
Sbjct: 44 LRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKAT-- 101
Query: 89 VQETKALVLSPSKELCNQLHKNIQELT--MKCSRDVKCVDISEQVDVSVQEPLLVERPDI 146
+ALVL+P++EL Q+ K + L M S C+ V VQ+ L +E P I
Sbjct: 102 ----QALVLAPTRELAQQIQKVVMALGDYMGASCHA-CIG-GTNVRAEVQK-LQMEAPHI 154
Query: 147 VVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
+V TP R L + L K +++ ++DEAD + S G++D + + + L Q +L S
Sbjct: 155 IVGTPGRVFDMLNRRYLSPKY-IKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLS 213
Query: 207 ATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQ 266
AT+ DVL + +R+P+ + L + + Q Y + +E+ K L L + L
Sbjct: 214 ATMPSDVLEVTKKFMRDPIRIXL---TLEGIRQF--YINVEREEWKLDTLCDLYE-TLTI 267
Query: 267 GKTIIFVNTVDKCYKL--KLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
+ +IF+NT K L K++ F +S ++ ++ K R + +F G V+I +D
Sbjct: 268 TQAVIFINTRRKVDWLTEKMHARDFTVSA--MHGDMDQKERDVIMREFRSGSSRVLITTD 325
Query: 325 --EKALETPQINSTNNRKRKRDKESGVSR 351
+ ++ Q++ N ++E+ + R
Sbjct: 326 LLARGIDVQQVSLVINYDLPTNRENYIHR 354
Score = 115 (45.5 bits), Expect = 1.0e-36, Sum P(2) = 1.0e-36
Identities = 26/69 (37%), Positives = 39/69 (56%)
Query: 349 VSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALS 408
++RGID Q VS VIN+D P + + YIHR GR R +G A++ V+ ++ + D
Sbjct: 327 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFY 386
Query: 409 FVSLREQDL 417
S+ E L
Sbjct: 387 NTSIEEMPL 395
>TIGR_CMR|GSU_0491 [details] [associations]
symbol:GSU_0491 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:NP_951550.1 ProteinModelPortal:Q74FW1 GeneID:2686040
KEGG:gsu:GSU0491 PATRIC:22023733 OMA:TTHEHIE ProtClustDB:CLSK827872
BioCyc:GSUL243231:GH27-490-MONOMER Uniprot:Q74FW1
Length = 450
Score = 314 (115.6 bits), Expect = 1.0e-36, Sum P(3) = 1.0e-36
Identities = 88/298 (29%), Positives = 146/298 (48%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+A G+ EPT +Q A+P L+N D+L A+TG+GKT AF +P +Q++ + Q
Sbjct: 13 LKAVAACGYTEPTPVQAAAVPRALENVDLLATAQTGTGKTAAFVLPALQRLSSPPQ-GPG 71
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ + LVL+P++EL Q+ ++ T V+ I + Q LL D +VA
Sbjct: 72 RGPRVLVLTPTRELAQQVTDAVR--TYGAFMRVRSGAILGGMPYHAQLRLLSAPVDFIVA 129
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + L ++LDL S LE++++DEAD + G+ DD+ + P Q +L +AT+
Sbjct: 130 TPGRLVDLLDRRSLDL-SRLELLVLDEADRMLDMGFSDDVDRIAAASPATRQTLLFTATM 188
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+ L +LR P + + H+ K +L L+ ++ +
Sbjct: 189 DSAMARLAGRLLREPERIDIAGTKTTHEHIEQRLHVADDLHHKNRLLRHLITDESLR-RA 247
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
IIF T L L L+ S L+ ++P AR + QG +++A+D A
Sbjct: 248 IIFSATKRDAENLALELKAQGHSAAALHGDMPQNARNRTIAAMKQGRIRLLVATDVAA 305
Score = 122 (48.0 bits), Expect = 1.0e-36, Sum P(3) = 1.0e-36
Identities = 24/48 (50%), Positives = 31/48 (64%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLRE 397
+RG+D +S+VINFD P + Y+HR GRT R G A+SF SL E
Sbjct: 305 ARGLDVTGISHVINFDLPKFAEDYVHRIGRTGRAGASGIAISFASLNE 352
Score = 45 (20.9 bits), Expect = 1.0e-28, Sum P(3) = 1.0e-28
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 404 GTALSFVSLREQDLMNDVNEYLMTNLHE 431
G A+SF SL E + + + Y+ L E
Sbjct: 342 GIAISFASLNEVNYLARIERYIGQTLPE 369
Score = 38 (18.4 bits), Expect = 1.0e-36, Sum P(3) = 1.0e-36
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 1 AIAKLGWLEPTLIQ 14
A+A G+ EPT +Q
Sbjct: 15 AVAACGYTEPTPVQ 28
>TAIR|locus:2091191 [details] [associations]
symbol:EIF4A-III "eukaryotic initiation factor 4A-III"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0016020 "membrane" evidence=IDA] [GO:0001666 "response to
hypoxia" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=IPI] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0035145 "exon-exon junction complex" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0016020
GO:GO:0016607 GO:GO:0001666 GO:GO:0006397 GO:GO:0003723
EMBL:AP000417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 GO:GO:0035145 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 KO:K13025
OMA:EDWKFDT EMBL:AJ010456 EMBL:AY050367 EMBL:BT002207
IPI:IPI00522986 PIR:T51737 RefSeq:NP_188610.1 UniGene:At.22577
ProteinModelPortal:Q94A52 SMR:Q94A52 STRING:Q94A52 PaxDb:Q94A52
PRIDE:Q94A52 EnsemblPlants:AT3G19760.1 GeneID:821513
KEGG:ath:AT3G19760 GeneFarm:908 TAIR:At3g19760 InParanoid:Q94A52
PhylomeDB:Q94A52 ProtClustDB:CLSN2915442 Genevestigator:Q94A52
GermOnline:AT3G19760 Uniprot:Q94A52
Length = 408
Score = 304 (112.1 bits), Expect = 1.1e-36, Sum P(2) = 1.1e-36
Identities = 86/327 (26%), Positives = 167/327 (51%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ + + G+ +P+ IQ+RA+ ILQ +DV+ +A++G+GKT A+ + Q + T+
Sbjct: 47 LRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSVCQVV----DTSS- 101
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVK-CVDISEQVDVSVQEPLLVERPDIVV 148
+E +AL+LSP++EL Q K IQ + + + C+ V +++ L +V
Sbjct: 102 REVQALILSPTRELATQTEKTIQAIGLHANIQAHACIG-GNSVGEDIRK--LEHGVHVVS 158
Query: 149 ATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
TP R +K ++L ++ ++++I+DE+D + S G++D + V ++LP Q L SAT
Sbjct: 159 GTPGRVCDMIKRRSLRTRA-IKLLILDESDEMLSRGFKDQIYDVYRYLPPDLQVCLVSAT 217
Query: 209 LSEDVLSLKHLILRNPV--ILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQ 266
L ++L + + PV ++K +E + + Q + + +E+ K L L L
Sbjct: 218 LPHEILEMTSKFMTEPVKILVKRDELTLEGIKQF--FVAVEKEEWKFDTLCDLYD-TLTI 274
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD-- 324
+ +IF NT K L + + ++ ++P K R + +F G V+I +D
Sbjct: 275 TQAVIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFRSGDSRVLITTDVW 334
Query: 325 EKALETPQINSTNNRKRKRDKESGVSR 351
+ ++ Q++ N ++E + R
Sbjct: 335 ARGIDVQQVSLVINYDLPNNRELYIHR 361
Score = 117 (46.2 bits), Expect = 1.1e-36, Sum P(2) = 1.1e-36
Identities = 24/54 (44%), Positives = 35/54 (64%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND 403
+RGID Q VS VIN+D P + + YIHR GR+ R +G A++FV + ++ D
Sbjct: 335 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRD 388
Score = 48 (22.0 bits), Expect = 1.8e-29, Sum P(2) = 1.8e-29
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 404 GTALSFVSLREQDLMNDVNEYLMTNLHE 431
G A++FV + ++ D+ +Y T + E
Sbjct: 372 GVAINFVKSDDIKILRDIEQYYSTQIDE 399
>UNIPROTKB|E2RBM7 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
OMA:EVRTVEQ GeneTree:ENSGT00670000098028 CTD:54555
EMBL:AAEX03012274 RefSeq:XP_541930.1 ProteinModelPortal:E2RBM7
Ensembl:ENSCAFT00000023054 GeneID:484814 KEGG:cfa:484814
NextBio:20858886 Uniprot:E2RBM7
Length = 488
Score = 343 (125.8 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
Identities = 98/315 (31%), Positives = 160/315 (50%)
Query: 35 KLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKA 94
+LG +PT +Q IP IL+ +D L A+TGSGKT AF +P++QK+ +
Sbjct: 19 QLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKL-----SEDPYGIFC 73
Query: 95 LVLSPSKELCNQLHKNIQELTMKCS-RDVKCVDISEQVDVSVQEPLLVERPDIVVATPAR 153
LVL+P++EL Q+ + + L +D C+ + +D+ Q L +P +V+ATP R
Sbjct: 74 LVLTPTRELAYQIAEQFRVLGKPLGLKD--CIIVGG-MDMVAQALELSRKPHVVIATPGR 130
Query: 154 ALAHLKAK-TLDLKSSLEIVIIDEADLVFSFGYED---DMKAVLKFLPKLYQAILASATL 209
HL++ T +K + +++DEAD + G D D++A+L +P Q +L SATL
Sbjct: 131 LADHLRSSNTFSIKK-IRFLVMDEADRLLEQGCTDFTVDLEAILAAVPTRRQTLLFSATL 189
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG-- 267
++ + L+ L P + + P + V QL ++L E K L L++ N
Sbjct: 190 TDTLKELQGLATNQPFFWEAQAP-VRTVEQLDQRYLLVPEKVKDAYLVHLIQ-NFQDEHE 247
Query: 268 --KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD- 324
IIF NT C L + L +F T L+S + K R A+ +F +Y ++IA+D
Sbjct: 248 DWSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSSIYRILIATDV 307
Query: 325 -EKALETPQINSTNN 338
+ L+ P + N
Sbjct: 308 ASRGLDIPTVQVVIN 322
Score = 98 (39.6 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
Identities = 22/45 (48%), Positives = 28/45 (62%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVS 394
SRG+D V VIN + P + YIHR GRTAR QG A++ V+
Sbjct: 309 SRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVT 353
>POMBASE|SPAC1F5.10 [details] [associations]
symbol:SPAC1F5.10 "ATP-dependent RNA helicase
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC1F5.10 GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 KO:K13025 OMA:EDWKFDT
OrthoDB:EOG4HTD1W PIR:T38085 RefSeq:NP_592863.1
ProteinModelPortal:Q10055 SMR:Q10055 PRIDE:Q10055
EnsemblFungi:SPAC1F5.10.1 GeneID:2541602 KEGG:spo:SPAC1F5.10
NextBio:20802696 Uniprot:Q10055
Length = 394
Score = 301 (111.0 bits), Expect = 1.5e-36, Sum P(2) = 1.5e-36
Identities = 88/325 (27%), Positives = 169/325 (52%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ I G+ P+ +Q RAI I + +DV+ +A++G+GKT F+I ++Q I +L V
Sbjct: 33 LRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGILQSI-DLS----V 87
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
++T+AL+LSP++EL Q+ +N+ L + +V+C V L +V
Sbjct: 88 RDTQALILSPTRELAVQI-QNVV-LALGDHMNVQCHACIGGTSVGNDIKKLDYGQHVVSG 145
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R ++ + L ++ ++++I+DEAD + + G+++ + + ++LP Q ++ SATL
Sbjct: 146 TPGRVTDMIRRRNLRTRN-VKMLILDEADELLNQGFKEQIYDIYRYLPPGTQVVVVSATL 204
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDE-KATILYTLLKLNLVQGK 268
+DVL + + NPV + ++ + + L Y I +++E K L L L +
Sbjct: 205 PQDVLEMTNKFTTNPVRILVKRDELT-LEGLKQYFIAVEKEEWKFDTLCDLYD-TLTITQ 262
Query: 269 TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD--EK 326
+IF N+ K L + + + ++ E+P K R + F QG V+I +D +
Sbjct: 263 AVIFCNSRRKVDWLTEKMREANFTVTSMHGEMPQKERDAIMQDFRQGNSRVLICTDIWAR 322
Query: 327 ALETPQINSTNNRKRKRDKESGVSR 351
++ Q++ N ++E+ + R
Sbjct: 323 GIDVQQVSLVINYDLPANRENYIHR 347
Score = 119 (46.9 bits), Expect = 1.5e-36, Sum P(2) = 1.5e-36
Identities = 24/54 (44%), Positives = 36/54 (66%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND 403
+RGID Q VS VIN+D P + + YIHR GR+ R +G A++FV+ + ++ D
Sbjct: 321 ARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKGVAINFVTNEDVRILRD 374
Score = 47 (21.6 bits), Expect = 5.2e-29, Sum P(2) = 5.2e-29
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 404 GTALSFVSLREQDLMNDVNEYLMTNLHE 431
G A++FV+ + ++ D+ +Y T + E
Sbjct: 358 GVAINFVTNEDVRILRDIEQYYSTVIDE 385
>TIGR_CMR|CPS_0174 [details] [associations]
symbol:CPS_0174 "ATP-dependent RNA helicase RhlB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006402
"mRNA catabolic process" evidence=ISS] HAMAP:MF_00661
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR023554 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0006401 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K03732 OMA:HIDGIKY ProtClustDB:PRK04837
RefSeq:YP_266942.1 ProteinModelPortal:Q48AH1 STRING:Q48AH1
GeneID:3521970 KEGG:cps:CPS_0174 PATRIC:21463765
BioCyc:CPSY167879:GI48-277-MONOMER Uniprot:Q48AH1
Length = 428
Score = 316 (116.3 bits), Expect = 2.1e-36, Sum P(2) = 2.1e-36
Identities = 87/314 (27%), Positives = 161/314 (51%)
Query: 42 TLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSK 101
T IQ +++P++LQ D+ +A+TG GKT AF ++ K+ + +AL+++P++
Sbjct: 33 TSIQAKSLPVLLQGTDLAGQAQTGEGKTIAFLAATFHHLLQ-KEAPTHNQPRALIMAPTR 91
Query: 102 ELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAK 161
EL Q+H++ E+ + V E + E L DI++ T R + ++K
Sbjct: 92 ELAIQIHRDATEMAKSTGLRLGVVYGGEGYESQRLE--LEAGVDILIGTCGRLIDYMKQG 149
Query: 162 TLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQ--AILASATLSEDVLSLKHL 219
+LK+ +E++++DEAD +F G+ D++ + +P + ++L SATLS V L
Sbjct: 150 IYNLKN-IEVIVLDEADRMFDLGFIKDIRYMFDKMPPATERLSMLFSATLSFRVKELAFD 208
Query: 220 ILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKC 279
+ +P +++E P S+++ ++K T+L TL++ + + K I+F NT C
Sbjct: 209 HMNDPTSVEVE-PEQKTNSRISEELFYPSNEDKMTLLQTLIEEDWPE-KAIVFANTKHVC 266
Query: 280 YKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA--LETPQINSTN 337
K+ +L KI +L ++P K R + +F G D+++A+D A L P +
Sbjct: 267 EKVFDHLNADKIRVGLLTGDVPQKKRLKILEEFTDGTVDILVATDVAARGLHIPSVTHVF 326
Query: 338 NRKRKRDKESGVSR 351
N D + V R
Sbjct: 327 NYDLPDDCQDYVHR 340
Score = 101 (40.6 bits), Expect = 2.1e-36, Sum P(2) = 2.1e-36
Identities = 22/53 (41%), Positives = 30/53 (56%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMN 402
+RG+ V++V N+D P D Q Y+HR GRT R G A+S EQ + N
Sbjct: 314 ARGLHIPSVTHVFNYDLPDDCQDYVHRIGRTGRAGETGHAISLAC--EQYVFN 364
>DICTYBASE|DDB_G0280147 [details] [associations]
symbol:ddx47 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0280147 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000152_GR GO:GO:0003723
EMBL:AAFI02000035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q5STU4 KO:K14777 OMA:IFIPSKF
RefSeq:XP_641271.1 ProteinModelPortal:Q54VT4 SMR:Q54VT4
EnsemblProtists:DDB0234204 GeneID:8622403 KEGG:ddi:DDB_G0280147
Uniprot:Q54VT4
Length = 546
Score = 338 (124.0 bits), Expect = 3.1e-36, Sum P(2) = 3.1e-36
Identities = 95/313 (30%), Positives = 157/313 (50%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
+ A KLG+ +P IQ +IP L+ +D++ A+TGSGKT AF IP++QK++ Q
Sbjct: 131 IDACNKLGFNKPKEIQRESIPWALKGRDIIGLAQTGSGKTAAFVIPVLQKLLEAPQGLF- 189
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVK-CVDISEQVDVSVQEPLLVERPDIVV 148
L L+P++EL Q+ + VK CV + +D Q L ++P +VV
Sbjct: 190 ----CLALAPTRELAYQIADQFNAIGSTIG--VKTCVLVGG-IDSMSQSLALAKKPHVVV 242
Query: 149 ATPARALAHLK-AKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
+P R L HL+ K +L+S ++ I+DEAD +FS +E+++ +LK +PK L SA
Sbjct: 243 GSPGRVLHHLEHTKGFNLRS-IKYFIMDEADRLFSADFEEEVNNILKVIPKERNTYLFSA 301
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
T++ V L+ L NPV +++ V L ++ K L +L L
Sbjct: 302 TMTSKVAKLQRASLVNPVKVQVASK-YQTVDTLLQQYLFVPFKYKDCYLAYILN-ELAGN 359
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
TIIF +T K+ + L +N ++ R ++ +F QG +++A+D A
Sbjct: 360 LTIIFTSTCASSTKIAMMLRNLGFGAIPINGDMDQGKRLASLNKFKQGTKSILVATDVAA 419
Query: 328 --LETPQINSTNN 338
L+ P ++ N
Sbjct: 420 RGLDIPSVDLVIN 432
Score = 111 (44.1 bits), Expect = 3.1e-36, Sum P(2) = 3.1e-36
Identities = 21/45 (46%), Positives = 30/45 (66%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVS 394
+RG+D V VIN+D P + + Y+HR GRTAR N G A++ V+
Sbjct: 419 ARGLDIPSVDLVINYDVPTNSKEYVHRVGRTARAGNSGRAITIVT 463
>RGD|1311124 [details] [associations]
symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 49"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1311124 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 IPI:IPI00362462 PRIDE:E9PTF0
Ensembl:ENSRNOT00000004891 UCSC:RGD:1311124 Uniprot:E9PTF0
Length = 480
Score = 338 (124.0 bits), Expect = 3.4e-36, Sum P(2) = 3.4e-36
Identities = 96/314 (30%), Positives = 158/314 (50%)
Query: 35 KLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKA 94
+LG +PT +Q IP IL+ +D L A+TGSGKT AF +P++QK+ +
Sbjct: 19 QLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKL-----SEDPYGIFC 73
Query: 95 LVLSPSKELCNQLHKNIQELTMKCS-RDVKCVDISEQVDVSVQEPLLVERPDIVVATPAR 153
LVL+P++EL Q+ + + L +D C+ + +D+ Q L +P +V+ATP R
Sbjct: 74 LVLTPTRELAYQIAEQFRVLGKPLGLKD--CIIVGG-MDMVTQALELSRKPHVVIATPGR 130
Query: 154 ALAHLKAK-TLDLKSSLEIVIIDEADLVFSFGYED---DMKAVLKFLPKLYQAILASATL 209
HL++ T ++K + +++DEAD + G D D++ +L +P Q +L SATL
Sbjct: 131 LADHLRSSNTFNMKK-IRFLVLDEADRLLEQGCTDFTADLETILSAVPARRQTLLFSATL 189
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKL---NLVQ 266
++ + L+ L P + + + V QL ++L E K L L++ L
Sbjct: 190 TDTLKELQGLATNQPFFWEAQA-TVRTVEQLDQRYLLVPEKVKDAYLVHLVQTFQDQLED 248
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD-- 324
IIF NT C L + L +F T L+S + K R A+ +F Y ++IA+D
Sbjct: 249 CSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALARFKSSTYRILIATDVA 308
Query: 325 EKALETPQINSTNN 338
+ L+ P + N
Sbjct: 309 SRGLDIPTVQVVIN 322
Score = 99 (39.9 bits), Expect = 3.4e-36, Sum P(2) = 3.4e-36
Identities = 23/53 (43%), Positives = 32/53 (60%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMN 402
SRG+D V VIN + P + YIHR GRTAR QG A++ V+ + L++
Sbjct: 309 SRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLLH 361
>CGD|CAL0000056 [details] [associations]
symbol:orf19.7546 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14777 EMBL:AR550432 RefSeq:XP_719308.1
ProteinModelPortal:Q5ACU6 SMR:Q5ACU6 STRING:Q5ACU6 GeneID:3639008
KEGG:cal:CaO19.7546 Uniprot:Q5ACU6
Length = 539
Score = 334 (122.6 bits), Expect = 3.6e-36, Sum P(2) = 3.6e-36
Identities = 108/349 (30%), Positives = 171/349 (48%)
Query: 11 TLIQVYFELPF-TFT-LFCIP--LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGS 66
T I EL F TF L +P L++I + + +PT IQ AIP L+ KD++ A+TGS
Sbjct: 112 TTIDPDAELKFKTFKELNLVPDLLESIESMKFTKPTPIQSEAIPHALEGKDIIGLAQTGS 171
Query: 67 GKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVD 126
GKT AFAIP++Q + + AQ Q ALVL+P++EL Q+ L C
Sbjct: 172 GKTAAFAIPILQSLWH----AQ-QPYFALVLAPTRELTFQIKDTFDALGSSMGLRSSC-- 224
Query: 127 ISEQVDVSVQEPLLVERPDIVVATPARALAHLK-AKTLDLKSSLEIVIIDEADLVFSFGY 185
I +D+ Q L+ +P ++VATP R + HL+ K LK+ L+ +++DEAD + +
Sbjct: 225 IVGGMDMMDQARDLMRKPHVIVATPGRIMDHLEHTKGFSLKN-LKYLVMDEADRLLDMDF 283
Query: 186 EDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHI 245
+ +LK +P L SAT++ + L+ L NPV + + L +
Sbjct: 284 GPALDKILKVIPIKRTTYLFSATMTNKIEKLQRASLHNPVRVAVSSK-YQTADNLVQSMM 342
Query: 246 LAQEDEKATILYTLLKLNLVQGKTII-FVNTVDKCYKLKLYLEQFKISTCVLNSELPAKA 304
L + K TIL LL N GK+II F TV + L + L+ +L
Sbjct: 343 LVNDGYKNTILIHLL--NEFMGKSIIVFTRTVAHAQRTALLARILGFNAVPLHGQLSQSQ 400
Query: 305 RCHAVYQFNQGLYDVIIASDEKA--LETPQINSTNNRKRKRDKESGVSR 351
R ++ +F ++++A+D A L+ P ++ N D ++ + R
Sbjct: 401 RLGSLNKFKSNQANILVATDVAARGLDIPSVDVVINYDIPTDSKAYIHR 449
Score = 115 (45.5 bits), Expect = 3.6e-36, Sum P(2) = 3.6e-36
Identities = 21/45 (46%), Positives = 29/45 (64%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVS 394
+RG+D V VIN+D P D + YIHR GRTAR G ++S ++
Sbjct: 423 ARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLIT 467
>ZFIN|ZDB-GENE-040120-6 [details] [associations]
symbol:eif4a1b "eukaryotic translation initiation
factor 4A, isoform 1B" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0006413 "translational initiation" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-040120-6 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG107989 OrthoDB:EOG4640C1 EMBL:BC153507
IPI:IPI00509685 UniGene:Dr.104803 ProteinModelPortal:A8E590
SMR:A8E590 STRING:A8E590 ArrayExpress:A8E590 Uniprot:A8E590
Length = 429
Score = 314 (115.6 bits), Expect = 4.6e-36, Sum P(2) = 4.6e-36
Identities = 99/329 (30%), Positives = 170/329 (51%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ I G+ +P+ IQ+RAI ++ DV+ +A++G+GKT FAI ++Q+I ++
Sbjct: 67 LRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQI-----DIEL 121
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVK-CVDISEQVDVSVQEPLLVERPDIVV 148
+ T+ALVL+P++EL Q+ K I L C+ V VQ+ L E P IVV
Sbjct: 122 KGTQALVLAPTRELAQQIQKVILALGDYMGATCHACIG-GTNVRNEVQK-LQAEAPHIVV 179
Query: 149 ATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
TP R L K L K +++ ++DEAD + S G++D + + + L Q +L SAT
Sbjct: 180 GTPGRVYDMLNRKFLSSKY-IKMFVLDEADEMLSRGFKDQIYEIFQKLSTSIQVVLLSAT 238
Query: 209 LSEDVLSLKHLILRNPV--ILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQ 266
+ +VL + +R PV ++K EE + + Q Y + +E+ K L L + L
Sbjct: 239 MPAEVLDVTTKFMREPVRILVKKEELTLEGIRQF--YINVEKEEWKLDTLCDLYE-TLTI 295
Query: 267 GKTIIFVNTVDKCYKL--KLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
+ +IF+NT K L K++ F +S L+ ++ K R + +F G V+I +D
Sbjct: 296 TQAVIFINTRRKVDWLTEKMHARDFTVSA--LHGDMDQKDRDLIMREFRSGSSRVLITTD 353
Query: 325 --EKALETPQINSTNNRKRKRDKESGVSR 351
+ ++ Q++ N ++E+ + R
Sbjct: 354 LLARGIDVQQVSLVINYDLPTNRENYIHR 382
Score = 109 (43.4 bits), Expect = 4.6e-36, Sum P(2) = 4.6e-36
Identities = 23/55 (41%), Positives = 35/55 (63%)
Query: 349 VSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND 403
++RGID Q VS VIN+D P + + YIHR GR R +G A++ V+ ++ + D
Sbjct: 355 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEDDKRTLRD 409
>UNIPROTKB|Q11039 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A homolog"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0005618
GO:GO:0006355 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842576 GO:GO:0006351 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
PIR:E70752 RefSeq:NP_215769.1 RefSeq:NP_335736.1
RefSeq:YP_006514628.1 ProteinModelPortal:Q11039 SMR:Q11039
PRIDE:Q11039 EnsemblBacteria:EBMYCT00000002426
EnsemblBacteria:EBMYCT00000070115 GeneID:13319832 GeneID:887069
GeneID:924778 KEGG:mtc:MT1292 KEGG:mtu:Rv1253 KEGG:mtv:RVBD_1253
PATRIC:18124606 TubercuList:Rv1253 OMA:LPQGMPK
ProtClustDB:CLSK791051 Uniprot:Q11039
Length = 563
Score = 315 (115.9 bits), Expect = 4.8e-36, Sum P(2) = 4.8e-36
Identities = 97/324 (29%), Positives = 161/324 (49%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AI +G+ PT IQ IP ++ DV+ A+TG+GKT AFAIPM+ KI ++ T++V
Sbjct: 25 LRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLSKI-DI--TSKV 81
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ALVL P++EL Q+ + S+ + + I +VQ L +VV
Sbjct: 82 PQ--ALVLVPTRELALQVAEAFGRYGAYLSQ-LNVLPIYGGSSYAVQLAGLRRGAQVVVG 138
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + HL+ TLDL S ++ +++DEAD + + G+ DD++ +L P+ Q L SAT+
Sbjct: 139 TPGRMIDHLERATLDL-SRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVALFSATM 197
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+ L L +P + + A ++ +I Q K L +L++ +
Sbjct: 198 PPAIRKLSAKYLHDPFEVTCKAKT-AVAENISQSYI--QVARKMDALTRVLEVEPFEAM- 253
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA-- 327
I+FV T ++ L S ++ ++P R + G D+++A+D A
Sbjct: 254 IVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDVAARG 313
Query: 328 LETPQINSTNNRKRKRDKESGVSR 351
L+ +I+ N D ES V R
Sbjct: 314 LDVERISHVLNYDIPHDTESYVHR 337
Score = 139 (54.0 bits), Expect = 4.8e-36, Sum P(2) = 4.8e-36
Identities = 31/75 (41%), Positives = 44/75 (58%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSF 409
+RG+D + +S+V+N+D P D + Y+HR GRT R G AL FVS RE L+ +
Sbjct: 311 ARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIEKATR 370
Query: 410 VSLREQDL--MNDVN 422
+L E L + DVN
Sbjct: 371 QTLTEAQLPTVEDVN 385
Score = 40 (19.1 bits), Expect = 1.1e-25, Sum P(2) = 1.1e-25
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 404 GTALSFVSLREQDLMNDVNEYLMTNLHE 431
G AL FVS RE L+ + + L E
Sbjct: 348 GAALIFVSPRELHLLKAIEKATRQTLTE 375
>SGD|S000002189 [details] [associations]
symbol:DBP10 "Putative ATP-dependent RNA helicase of the
DEAD-box protein family" species:4932 "Saccharomyces cerevisiae"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0030687 "preribosome, large subunit precursor"
evidence=IGI;IPI] [GO:0000463 "maturation of LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0000466 "maturation of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA;IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000002189
GO:GO:0005524 GO:GO:0005730 EMBL:BK006938 GO:GO:0003723
GO:GO:0030687 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:Z71781 GO:GO:0000463 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455
OMA:HLKVEMN OrthoDB:EOG4JWZP1 EMBL:Z74079 PIR:S67564
RefSeq:NP_010253.2 ProteinModelPortal:Q12389 SMR:Q12389
DIP:DIP-6387N IntAct:Q12389 MINT:MINT-613064 STRING:Q12389
PaxDb:Q12389 PeptideAtlas:Q12389 EnsemblFungi:YDL031W GeneID:851530
KEGG:sce:YDL031W CYGD:YDL031w GeneTree:ENSGT00550000075100
NextBio:968920 Genevestigator:Q12389 GermOnline:YDL031W
GO:GO:0000466 Uniprot:Q12389
Length = 995
Score = 347 (127.2 bits), Expect = 5.3e-36, Sum P(2) = 5.3e-36
Identities = 88/244 (36%), Positives = 142/244 (58%)
Query: 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII 81
+F L I L I + G+ +PT IQ + IPLILQ++D++ ARTGSGKT AF +PM++K
Sbjct: 141 SFGLSKIVLNNIKRKGFRQPTPIQRKTIPLILQSRDIVGMARTGSGKTAAFILPMVEK-- 198
Query: 82 NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLV 141
LK + +A++LSPS+EL Q ++ +++ V ++ + Q +++
Sbjct: 199 -LKSHSGKIGARAVILSPSRELAMQTFNVFKDFAR--GTELRSVLLTGGDSLEEQFGMMM 255
Query: 142 ERPDIVVATPARALAHLKAK-TLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLY 200
PD+++ATP R L HLK + LDLKS +E V+ DEAD +F G+++ + +L LP
Sbjct: 256 TNPDVIIATPGRFL-HLKVEMNLDLKS-VEYVVFDEADRLFEMGFQEQLNELLASLPTTR 313
Query: 201 QAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQE--DEKATILYT 258
Q +L SATL ++ L NPV+++L+ A VS+ L+ + D +A +LY
Sbjct: 314 QTLLFSATLPNSLVDFVKAGLVNPVLVRLD--AETKVSENLEMLFLSSKNADREANLLYI 371
Query: 259 LLKL 262
L ++
Sbjct: 372 LQEI 375
Score = 113 (44.8 bits), Expect = 5.3e-36, Sum P(2) = 5.3e-36
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND 403
+RG+D ++NVIN+ P + ++HR GRTAR N+G A S V+ E + D
Sbjct: 493 ARGVDIPMLANVINYTLPGSSKIFVHRVGRTARAGNKGWAYSIVAENELPYLLD 546
Score = 51 (23.0 bits), Expect = 1.7e-29, Sum P(2) = 1.7e-29
Identities = 17/72 (23%), Positives = 29/72 (40%)
Query: 269 TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA- 327
TI+FV T + L + L AR +Y F GL +++ +D A
Sbjct: 435 TILFVPTRHHVEYISQLLRDCGYLISYIYGTLDQHARKRQLYNFRAGLTSILVVTDVAAR 494
Query: 328 -LETPQINSTNN 338
++ P + + N
Sbjct: 495 GVDIPMLANVIN 506
>WB|WBGene00002083 [details] [associations]
symbol:inf-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0019915 "lipid storage" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0008340 GO:GO:0009792
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0040011
GO:GO:0000003 GO:GO:0019915 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:FO081266 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 KO:K03257 OMA:TENDARQ
EMBL:Z12116 PIR:S26281 RefSeq:NP_001022623.1 RefSeq:NP_001022624.1
UniGene:Cel.6803 ProteinModelPortal:P27639 SMR:P27639
DIP:DIP-27102N IntAct:P27639 MINT:MINT-1112147 STRING:P27639
PaxDb:P27639 PRIDE:P27639 EnsemblMetazoa:F57B9.6a.1
EnsemblMetazoa:F57B9.6a.2 GeneID:175966 KEGG:cel:CELE_F57B9.6
UCSC:F57B9.6a.1 CTD:175966 WormBase:F57B9.6a WormBase:F57B9.6b
InParanoid:P27639 NextBio:890522 Uniprot:P27639
Length = 402
Score = 300 (110.7 bits), Expect = 6.5e-36, Sum P(2) = 6.5e-36
Identities = 95/331 (28%), Positives = 174/331 (52%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ I G+ +P+ IQ+RAI KDV+ +A++G+GKT F++ ++Q+I + + V
Sbjct: 41 LRGIYGFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSILQRIDH--EDPHV 98
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDV-KCVDISEQVDVSVQEPLLVERPDIVV 148
Q ALV++P++EL Q+ K + L + ++ C+ + D + L +VV
Sbjct: 99 Q---ALVMAPTRELAQQIQKVMSALGEYLNVNILPCIGGTSVRD---DQRKLEAGIHVVV 152
Query: 149 ATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
TP R + LD S +++ ++DEAD + S G++D + V + +P+ Q +L SAT
Sbjct: 153 GTPGRVGDMINRNALDT-SRIKMFVLDEADEMLSRGFKDQIYEVFRSMPQDVQVVLLSAT 211
Query: 209 LSEDVLSLKHLILRNPV--ILKLEEPAIAPVSQLAHYHILAQEDE-KATILYTLLKL-NL 264
+ +VL + + +RNP+ ++K +E + + Q ++I Q+DE K L L + N+
Sbjct: 212 MPSEVLDVTNRFMRNPIRILVKKDELTLEGIRQ---FYINVQKDEWKFDCLCDLYNVVNV 268
Query: 265 VQGKTIIFVNTVDKCYKL--KLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIA 322
Q +IF NT K L K+ QF +S C L+ ++ R + +F G V+I
Sbjct: 269 TQA--VIFCNTRRKVDTLTEKMTENQFTVS-C-LHGDMDQAERDTIMREFRSGSSRVLIT 324
Query: 323 SD--EKALETPQINSTNNRKRKRDKESGVSR 351
+D + ++ Q++ N ++E+ + R
Sbjct: 325 TDILARGIDVQQVSLVINYDLPSNRENYIHR 355
Score = 114 (45.2 bits), Expect = 6.5e-36, Sum P(2) = 6.5e-36
Identities = 23/46 (50%), Positives = 33/46 (71%)
Query: 349 VSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVS 394
++RGID Q VS VIN+D P + + YIHR GR+ R +G A++FV+
Sbjct: 328 LARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVT 373
Score = 42 (19.8 bits), Expect = 2.3e-28, Sum P(2) = 2.3e-28
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 404 GTALSFVSLREQDLMNDVNEYLMTNLHE 431
G A++FV+ + + ++ Y T + E
Sbjct: 366 GVAINFVTENDARQLKEIESYYTTQIEE 393
>ASPGD|ASPL0000014018 [details] [associations]
symbol:fal1 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 EMBL:BN001302 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
EMBL:AACD01000139 KO:K13025 RefSeq:XP_681285.1
ProteinModelPortal:Q5AUL4 SMR:Q5AUL4 PRIDE:Q5AUL4
EnsemblFungi:CADANIAT00004036 GeneID:2869287 KEGG:ani:AN8016.2
OMA:EDWKFDT OrthoDB:EOG4HTD1W Uniprot:Q5AUL4
Length = 399
Score = 296 (109.3 bits), Expect = 7.0e-36, Sum P(2) = 7.0e-36
Identities = 88/327 (26%), Positives = 165/327 (50%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ I G+ P+ +Q RAI I + +D + +A++G+GKT F+I +Q I + V
Sbjct: 37 LRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISALQVIDTV-----V 91
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ET+ALVLSP++EL Q+ I + + +V+C ++ L +V
Sbjct: 92 RETQALVLSPTRELATQIQSVI--MALGDYMNVQCHACIGGTNIGEDIRKLDYGQHVVSG 149
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R ++ + L + ++++++DEAD + + G+ + + V ++LP Q ++ SATL
Sbjct: 150 TPGRVADMIRRRHLRTRH-IKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSATL 208
Query: 210 SEDVLSLKHLILRNPV--ILKLEEPAIAPVSQLAHYHILAQEDE-KATILYTLLKLNLVQ 266
DVL + + +PV ++K +E + + Q Y I +++E K L L L
Sbjct: 209 PYDVLDMTTKFMTDPVRVLVKRDELTLEGIKQ---YFIAVEKEEWKFDTLCDLYD-TLTI 264
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD-- 324
+ +IF NT K L + + + ++ E+P K R + F QG V+I++D
Sbjct: 265 TQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVW 324
Query: 325 EKALETPQINSTNNRKRKRDKESGVSR 351
+ ++ Q++ N ++E+ + R
Sbjct: 325 ARGIDVQQVSLVINYDLPTNRENYIHR 351
Score = 118 (46.6 bits), Expect = 7.0e-36, Sum P(2) = 7.0e-36
Identities = 24/54 (44%), Positives = 36/54 (66%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND 403
+RGID Q VS VIN+D P + + YIHR GR+ R +G A++FV+ + ++ D
Sbjct: 325 ARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRILRD 378
Score = 44 (20.5 bits), Expect = 4.0e-28, Sum P(2) = 4.0e-28
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 404 GTALSFVSLREQDLMNDVNEYLMTNLHE 431
G A++FV+ + ++ D+ Y T + E
Sbjct: 362 GVAINFVTSDDVRILRDIELYYSTQIDE 389
>CGD|CAL0003464 [details] [associations]
symbol:orf19.5991 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IEA] [GO:0000466 "maturation of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0000463 "maturation of LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
CGD:CAL0003464 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AACQ01000003
EMBL:AACQ01000004 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_723054.1
RefSeq:XP_723201.1 STRING:Q5ANB2 GeneID:3635229 GeneID:3635325
KEGG:cal:CaO19.13412 KEGG:cal:CaO19.5991 KO:K14808 Uniprot:Q5ANB2
Length = 908
Score = 338 (124.0 bits), Expect = 7.5e-36, Sum P(3) = 7.5e-36
Identities = 88/262 (33%), Positives = 150/262 (57%)
Query: 22 TFTLFCIPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKII 81
+F L L IAK G+ +PT IQ + IPLI++ +DV+ ARTGSGKT AF +P+I+++
Sbjct: 103 SFGLTKFILANIAKKGYKQPTPIQRKTIPLIMEGRDVVGMARTGSGKTAAFVLPLIERL- 161
Query: 82 NLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLV 141
++ Q +A++LSPS+EL Q +K ++E + + + + ++ + ++
Sbjct: 162 ---KSRQPGGVRAVILSPSRELALQTYKQVKEFSHGTNLQSIVLIGGDSLEEDFSK--MM 216
Query: 142 ERPDIVVATPARALAHLKAKT-LDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLY 200
+PDI+V TP R L HLK + DL + ++ ++ DEAD +F G+ + + +L LP
Sbjct: 217 TKPDIIVCTPGRFL-HLKVEMQYDLMT-VQYIVFDEADRLFEMGFAEQLNELLASLPSNR 274
Query: 201 QAILASATLSEDVLSLKHLILRNPVILKLE-EPAIAPVSQLAHYHILAQEDEKATILYTL 259
Q++L SATL ++ L NPV+++L+ E I+ Q+A++ E E A +LY L
Sbjct: 275 QSLLFSATLPRSLVDFAKAGLTNPVLVRLDAESKISDQLQMAYFTTKKNERE-ANLLYIL 333
Query: 260 ---LKLNLVQGKTIIFVNTVDK 278
+K+ L + I + +DK
Sbjct: 334 QEVIKMPLGSEEQIKKLKDMDK 355
Score = 122 (48.0 bits), Expect = 7.5e-36, Sum P(3) = 7.5e-36
Identities = 25/54 (46%), Positives = 34/54 (62%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND 403
+RGID ++NVINF P + +IHR GRTAR N+G A S V+ +E + D
Sbjct: 455 ARGIDIPVLANVINFTLPASSKIFIHRVGRTARAGNKGWAYSIVNEKELPYLLD 508
Score = 61 (26.5 bits), Expect = 1.6e-29, Sum P(3) = 1.6e-29
Identities = 21/73 (28%), Positives = 37/73 (50%)
Query: 269 TIIFVNTVDKC-YKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
TI+FV T Y KL + + + + + L AR + +YQF GL +V++ +D A
Sbjct: 397 TIVFVPTKHHVEYVTKLLRDAGYLVSYIYGT-LDQHARKNQLYQFRVGLTNVLVVTDVAA 455
Query: 328 --LETPQINSTNN 338
++ P + + N
Sbjct: 456 RGIDIPVLANVIN 468
Score = 37 (18.1 bits), Expect = 7.5e-36, Sum P(3) = 7.5e-36
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 2 IAKLGWLEPTLIQ 14
IAK G+ +PT IQ
Sbjct: 114 IAKKGYKQPTPIQ 126
>ZFIN|ZDB-GENE-040426-915 [details] [associations]
symbol:eif4a3 "eukaryotic translation initiation
factor 4A, isoform 3" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-040426-915
GO:GO:0005524 GO:GO:0005737 GO:GO:0006417 GO:GO:0000184
GO:GO:0008380 GO:GO:0016607 GO:GO:0006397 GO:GO:0003723
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025 CTD:9775
OrthoDB:EOG4229JV EMBL:BC045939 IPI:IPI00481285 RefSeq:NP_957372.1
UniGene:Dr.78203 ProteinModelPortal:Q7ZVA6 SMR:Q7ZVA6 STRING:Q7ZVA6
PRIDE:Q7ZVA6 GeneID:394053 KEGG:dre:394053 InParanoid:Q7ZVA6
NextBio:20815014 ArrayExpress:Q7ZVA6 Uniprot:Q7ZVA6
Length = 406
Score = 305 (112.4 bits), Expect = 9.3e-36, Sum P(2) = 9.3e-36
Identities = 83/326 (25%), Positives = 171/326 (52%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ I G+ +P+ IQ+RAI I++ +DV+ ++++G+GKT F + ++Q + QV
Sbjct: 45 LRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCL-----DIQV 99
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ET+AL+L+P++EL Q+ K + L + +V+C +V L +V
Sbjct: 100 RETQALILAPTRELAGQIQKVL--LALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAG 157
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R ++ ++L ++ ++++++DEAD + + G+++ + V ++LP Q L SATL
Sbjct: 158 TPGRVFDMIRRRSLRTRA-IKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVCLISATL 216
Query: 210 SEDVLSLKHLILRNPV--ILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
++L + + + +P+ ++K +E + + Q + + +E+ K L L L
Sbjct: 217 PHEILEMTNKFMTDPIRILVKRDELTLEGIKQF--FVAVEREEWKFDTLCDLYD-TLTIT 273
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD--E 325
+ +IF NT K L + + + ++ ++P K R + +F G V+I++D
Sbjct: 274 QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWA 333
Query: 326 KALETPQINSTNNRKRKRDKESGVSR 351
+ L+ Q++ N ++E + R
Sbjct: 334 RGLDVSQVSLIINYDLPNNRELYIHR 359
Score = 107 (42.7 bits), Expect = 9.3e-36, Sum P(2) = 9.3e-36
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND 403
+RG+D VS +IN+D P + + YIHR GR+ R +G A++FV + ++ D
Sbjct: 333 ARGLDVSQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRD 386
Score = 46 (21.3 bits), Expect = 2.3e-29, Sum P(2) = 2.3e-29
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 404 GTALSFVSLREQDLMNDVNEYLMTNLHE 431
G A++FV + ++ D+ +Y T + E
Sbjct: 370 GVAINFVKNDDIRILRDIEQYYSTQIDE 397
>UNIPROTKB|F1NA53 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 EMBL:AADN02071779 EMBL:AADN02071780
IPI:IPI00684751 ProteinModelPortal:F1NA53
Ensembl:ENSGALT00000004949 ArrayExpress:F1NA53 Uniprot:F1NA53
Length = 402
Score = 323 (118.8 bits), Expect = 9.5e-36, Sum P(2) = 9.5e-36
Identities = 94/314 (29%), Positives = 159/314 (50%)
Query: 35 KLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKA 94
++G PT +Q IP ILQ +D L A+TGSGKT AF +P++Q + +
Sbjct: 19 QMGLSRPTPVQASCIPPILQGRDCLGCAKTGSGKTAAFVLPVLQVL-----SEDPYGIFC 73
Query: 95 LVLSPSKELCNQLHKNIQELTMKCS-RDVKCVDISEQVDVSVQEPLLVERPDIVVATPAR 153
LVL+P++EL Q+ + + L +D CV + +D+ Q L +P +V+ATP R
Sbjct: 74 LVLTPTRELAYQIAEQFRVLGKPLGLKD--CVVVGG-LDMVAQALELSRKPHVVIATPGR 130
Query: 154 ALAHLKAK-TLDLKSSLEIVIIDEADLVFSFGYED---DMKAVLKFLPKLYQAILASATL 209
HL++ T LK L+ +++DEAD + G D D++ +L+ +P Q +L SATL
Sbjct: 131 LADHLRSSNTFSLKK-LKFLVLDEADRLLEQGCADFTADLEVILEAVPARRQTLLFSATL 189
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
++ + LK L + P + + V +L ++L E K L L++ + +
Sbjct: 190 TDTLNELKSLAMNRPFFWEAASE-VRTVDELDQRYLLVPEAVKDAYLVHLIQTFQDEHED 248
Query: 270 ---IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
IIF T +C L + L +F + L+S + + R A+ +F ++ ++IA+D
Sbjct: 249 WSIIIFTKTCKECQILNMMLRKFSFPSVALHSMMKQRQRFAALAKFKSSIFKILIATDVA 308
Query: 327 A--LETPQINSTNN 338
A L+ P + N
Sbjct: 309 ARGLDIPTVQVVIN 322
Score = 87 (35.7 bits), Expect = 9.5e-36, Sum P(2) = 9.5e-36
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVS 394
+RG+D V VIN + P + YIHR GRTAR G +++ V+
Sbjct: 309 ARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGISITMVT 353
>ZFIN|ZDB-GENE-031030-2 [details] [associations]
symbol:eif4a1a "eukaryotic translation initiation
factor 4A, isoform 1A" species:7955 "Danio rerio" [GO:0004386
"helicase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0006413
"translational initiation" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031030-2 GO:GO:0005524 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 HSSP:P10081 GeneTree:ENSGT00530000062880
KO:K03257 OMA:IKMFILD OrthoDB:EOG4640C1 EMBL:CR848032 EMBL:BC048899
IPI:IPI00502344 RefSeq:NP_938180.1 UniGene:Dr.75120 SMR:Q802C9
STRING:Q802C9 Ensembl:ENSDART00000058913 GeneID:386634
KEGG:dre:386634 CTD:386634 InParanoid:Q802C9 NextBio:20813962
Uniprot:Q802C9
Length = 406
Score = 304 (112.1 bits), Expect = 9.5e-36, Sum P(2) = 9.5e-36
Identities = 96/329 (29%), Positives = 171/329 (51%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ I G+ +P+ IQ+RAI ++ DV+ +A++G+GKT FAI ++Q+I ++
Sbjct: 44 LRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQI-----DVEL 98
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVK-CVDISEQVDVSVQEPLLVERPDIVV 148
+ T+A+VL+P++EL Q+ K + L C+ V VQ+ L + P IVV
Sbjct: 99 KATQAMVLAPTRELAQQIQKVVLALGDYMGATCHACIG-GTNVRNDVQK-LQADVPHIVV 156
Query: 149 ATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
TP R L + L K +++ +DEAD + S G++D + + + L Q IL SAT
Sbjct: 157 GTPGRVFDMLNRRYLSPKY-IKMFALDEADEMLSRGFKDQIYEIFQKLATDTQVILLSAT 215
Query: 209 LSEDVLSLKHLILRNPV--ILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQ 266
+ ++VL + +R+PV ++K EE + + Q Y + +E+ K L L + L
Sbjct: 216 MPQEVLEVTTKFMRDPVRILVKKEELTLEGIRQF--YINVEKEEWKLDTLCDLYE-TLTI 272
Query: 267 GKTIIFVNTVDKCYKL--KLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
+ +IF+NT K L K++ F +S L+ ++ K R + +F G V+I +D
Sbjct: 273 TQAVIFINTRRKVDWLTEKMHARDFTVSA--LHGDMEQKERDVIMKEFRSGSSRVLITTD 330
Query: 325 --EKALETPQINSTNNRKRKRDKESGVSR 351
+ ++ Q++ N ++E+ + R
Sbjct: 331 LLARGIDVQQVSLVINYDLPTNRENYIHR 359
Score = 108 (43.1 bits), Expect = 9.5e-36, Sum P(2) = 9.5e-36
Identities = 22/55 (40%), Positives = 35/55 (63%)
Query: 349 VSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND 403
++RGID Q VS VIN+D P + + YIHR GR R +G A++ ++ ++ + D
Sbjct: 332 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMITEDDKRTLRD 386
>DICTYBASE|DDB_G0292992 [details] [associations]
symbol:helA "putative RNA helicase" species:44689
"Dictyostelium discoideum" [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0292992 GO:GO:0005524
GenomeReviews:CM000155_GR GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AAFI02000199 KO:K14808 HSSP:P10081 EMBL:X81822
RefSeq:XP_629281.1 ProteinModelPortal:Q54CD8 STRING:Q54CD8
EnsemblProtists:DDB0215372 GeneID:8629004 KEGG:ddi:DDB_G0292992
OMA:RLPKDGH ProtClustDB:CLSZ2429315 Uniprot:Q54CD8
Length = 1091
Score = 397 (144.8 bits), Expect = 1.0e-35, P = 1.0e-35
Identities = 127/386 (32%), Positives = 189/386 (48%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AI K G+ PT IQ ++IP+IL D++ ARTGSGKTGAF IPMIQK+ + T V
Sbjct: 242 LKAILKKGFNVPTPIQRKSIPMILDGHDIVGMARTGSGKTGAFVIPMIQKLGDHSTTVGV 301
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCS-RDVKCVDISEQVDVSVQEPLLVERPDIVV 148
+A++LSP++EL Q K +++ + R + V D Q L PDI++
Sbjct: 302 ---RAVILSPTRELAIQTFKVVKDFSQGTQLRTILIVGGDSMED---QFTDLARNPDIII 355
Query: 149 ATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
ATP R + HL + L S ++ ++ DEAD +F G+ + + +L L + Q +L SAT
Sbjct: 356 ATPGRLMHHLLETGMSL-SKVQYIVFDEADRLFEMGFNEQLTEILSKLSENRQTLLFSAT 414
Query: 209 LSEDVLSLKHLILRNPVILKLE-EPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
L ++ L NP ++ L+ + I+ L+ + + + +EK +L LLK +++
Sbjct: 415 LPSLLVDFVRAGLNNPKLINLDTDTKISENLSLSFFTL--RHEEKLGVLLFLLK-DIIYK 471
Query: 268 KTII---FVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
K + T +Q K ST + S H + + G+ I
Sbjct: 472 KPQLPTTETTTTTTTNNESNQQQQKKSSTIIFVSTKYHVEFIHILLE-RAGIASTYIHG- 529
Query: 325 EKALETPQINSTNNRKRKRDKESGV-------SRGIDFQFVSNVINFDFPLDIQCYIHRA 377
L+ P N K R + GV +RGID + NVINFDFP + +IHR
Sbjct: 530 --YLD-PVARKINLAKF-RSHQVGVMVVTDLAARGIDIPLLDNVINFDFPPKEKIFIHRV 585
Query: 378 GRTARGKNQGTALSFVSLREQDLMND 403
GR AR G A S VS E M D
Sbjct: 586 GRVARAGRSGIAYSLVSPDEVPYMID 611
>TIGR_CMR|SO_3783 [details] [associations]
symbol:SO_3783 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_719320.1 ProteinModelPortal:Q8EAV8 GeneID:1171430
KEGG:son:SO_3783 PATRIC:23527244 ProtClustDB:CLSK2393932
Uniprot:Q8EAV8
Length = 535
Score = 334 (122.6 bits), Expect = 1.1e-35, Sum P(2) = 1.1e-35
Identities = 90/313 (28%), Positives = 167/313 (53%)
Query: 29 PLQ-AIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTA 87
PLQ A+++ G+ P+ IQ +AIP +L KDV+ A+TG+GKT F +P+++ ++ A
Sbjct: 11 PLQKAVSEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLE-LLAKGHKA 69
Query: 88 QVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
+ +T+ALVL+P++EL Q+ ++++ T ++ + V ++ Q L D++
Sbjct: 70 KSGQTRALVLTPTRELAAQVGESVE--TYGKYLPLRSAVVFGGVPINPQINKLRHGVDVL 127
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
VATP R L ++ + + LEI+++DEAD + G+ D+K +L LP Q ++ SA
Sbjct: 128 VATPGRLLDLVQQNAVKF-NQLEILVLDEADRMLDMGFIRDIKKILALLPAKRQNLMFSA 186
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
T S+++ L ++ +PV + + P A + + + + +K+ +L L+K Q
Sbjct: 187 TFSDEIRELAKGLVNHPVEISVT-PRNAAATTVKQWICPVDKTQKSALLIQLIKQENWQ- 244
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD--E 325
+ ++F T +L L Q +IS ++ AR A+ F G V++A+D
Sbjct: 245 QVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVLVATDIAA 304
Query: 326 KALETPQINSTNN 338
+ L+ Q+ N
Sbjct: 305 RGLDIDQLPQVVN 317
Score = 110 (43.8 bits), Expect = 1.1e-35, Sum P(2) = 1.1e-35
Identities = 23/54 (42%), Positives = 31/54 (57%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND 403
+RG+D + V+NFD P + Y+HR GRT R G A+S VS E L+ D
Sbjct: 304 ARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGATGQAVSLVSSEEIKLLKD 357
>UNIPROTKB|Q9KLE2 [details] [associations]
symbol:VC_A0804 "ATP-dependent RNA helicase DeaD"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000910 "cytokinesis" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0016070 "RNA metabolic
process" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0000910 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:ILFMTPR PIR:C82415 RefSeq:NP_233190.1
ProteinModelPortal:Q9KLE2 DNASU:2612819 GeneID:2612819
KEGG:vch:VCA0804 PATRIC:20086156 ProtClustDB:CLSK789062
Uniprot:Q9KLE2
Length = 663
Score = 332 (121.9 bits), Expect = 1.1e-35, Sum P(2) = 1.1e-35
Identities = 96/326 (29%), Positives = 163/326 (50%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L A+ ++G++ PT IQ AIP++L+ +D L +A+TG+GKT AF++P++ K+ NL Q
Sbjct: 38 LSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNKL-NLSQ---- 92
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ +A+V++P++EL Q+ I+ L + +K ++I + Q L IVV
Sbjct: 93 YKPQAIVMAPTRELAIQVAAEIKNLGQNI-KGLKVLEIYGGASILDQMRALKSGAHIVVG 151
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + L L I+DEAD + G+ DD+ +++ P+ Q +L SAT+
Sbjct: 152 TPGRVKDLITRDRLHL-DECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFSATM 210
Query: 210 SEDVLSLKHLILRNPVILKL--EEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
V + LRNP + + +A V Q Y ++ + EK + LL+
Sbjct: 211 PPMVKEIVERFLRNPECVDVAGSNQTVAKVEQ--QYWVV-KGVEKDEAMARLLETEETDA 267
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD--E 325
+I+FV T +L +L L+ ++P R V QG+ D+++A+D
Sbjct: 268 -SIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVA 326
Query: 326 KALETPQINSTNNRKRKRDKESGVSR 351
+ L+ P+I N D ES + R
Sbjct: 327 RGLDVPRITHVYNYDIPFDVESYIHR 352
Score = 120 (47.3 bits), Expect = 1.1e-35, Sum P(2) = 1.1e-35
Identities = 27/86 (31%), Positives = 47/86 (54%)
Query: 349 VSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALS 408
V+RG+D +++V N+D P D++ YIHR GRT R +G A+ V + ++ ++
Sbjct: 325 VARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVT 384
Query: 409 FVSLREQDL--MNDVNEYLMTNLHED 432
S+ E L + V E +T L ++
Sbjct: 385 RSSMEEIQLPHRDKVAESRLTKLGQE 410
>TIGR_CMR|VC_A0804 [details] [associations]
symbol:VC_A0804 "ATP-dependent RNA helicase DeaD"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0016070 "RNA metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0000910 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:ILFMTPR PIR:C82415 RefSeq:NP_233190.1
ProteinModelPortal:Q9KLE2 DNASU:2612819 GeneID:2612819
KEGG:vch:VCA0804 PATRIC:20086156 ProtClustDB:CLSK789062
Uniprot:Q9KLE2
Length = 663
Score = 332 (121.9 bits), Expect = 1.1e-35, Sum P(2) = 1.1e-35
Identities = 96/326 (29%), Positives = 163/326 (50%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L A+ ++G++ PT IQ AIP++L+ +D L +A+TG+GKT AF++P++ K+ NL Q
Sbjct: 38 LSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNKL-NLSQ---- 92
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ +A+V++P++EL Q+ I+ L + +K ++I + Q L IVV
Sbjct: 93 YKPQAIVMAPTRELAIQVAAEIKNLGQNI-KGLKVLEIYGGASILDQMRALKSGAHIVVG 151
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + L L I+DEAD + G+ DD+ +++ P+ Q +L SAT+
Sbjct: 152 TPGRVKDLITRDRLHL-DECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFSATM 210
Query: 210 SEDVLSLKHLILRNPVILKL--EEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
V + LRNP + + +A V Q Y ++ + EK + LL+
Sbjct: 211 PPMVKEIVERFLRNPECVDVAGSNQTVAKVEQ--QYWVV-KGVEKDEAMARLLETEETDA 267
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD--E 325
+I+FV T +L +L L+ ++P R V QG+ D+++A+D
Sbjct: 268 -SIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVA 326
Query: 326 KALETPQINSTNNRKRKRDKESGVSR 351
+ L+ P+I N D ES + R
Sbjct: 327 RGLDVPRITHVYNYDIPFDVESYIHR 352
Score = 120 (47.3 bits), Expect = 1.1e-35, Sum P(2) = 1.1e-35
Identities = 27/86 (31%), Positives = 47/86 (54%)
Query: 349 VSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALS 408
V+RG+D +++V N+D P D++ YIHR GRT R +G A+ V + ++ ++
Sbjct: 325 VARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVT 384
Query: 409 FVSLREQDL--MNDVNEYLMTNLHED 432
S+ E L + V E +T L ++
Sbjct: 385 RSSMEEIQLPHRDKVAESRLTKLGQE 410
>ZFIN|ZDB-GENE-021220-2 [details] [associations]
symbol:ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
54" species:7955 "Danio rerio" [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-021220-2 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K14808
HOGENOM:HOG000246455 GeneTree:ENSGT00550000075100 CTD:79039
HOVERGEN:HBG051333 OrthoDB:EOG469QTB EMBL:CU929062 EMBL:FP236447
EMBL:AY099535 IPI:IPI00481864 RefSeq:NP_775375.1 UniGene:Dr.18320
STRING:Q8JGR2 Ensembl:ENSDART00000026416 Ensembl:ENSDART00000128587
GeneID:286777 KEGG:dre:286777 NextBio:20806437 Uniprot:Q8JGR2
Length = 862
Score = 343 (125.8 bits), Expect = 1.6e-35, Sum P(2) = 1.6e-35
Identities = 94/312 (30%), Positives = 165/312 (52%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ 90
+ I K G+ PT IQ + IP+IL KDV+ ARTGSGKT AF +P+ +K+ + Q Q
Sbjct: 91 KGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTAAFLVPLFEKL----KAPQAQ 146
Query: 91 E-TKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+AL+L+P++EL Q K +EL + + +D Q L E PDI++
Sbjct: 147 TGARALILTPTRELALQTMKFTKELGKFTGLRTALILGGDSMDD--QFAALHENPDIIIG 204
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + ++ L L+S +E V+ DEAD +F G+ + ++ +++ LP Q +L SATL
Sbjct: 205 TPGRLMHVIQEMNLKLQS-VEYVVFDEADRLFEMGFAEQLQEIIRRLPDARQTLLFSATL 263
Query: 210 SEDVLSLKHLILRNPVILKLE-EPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGK 268
+ ++ L PV+++L+ + ++ +L+ + L +D+ A +L+ L + Q +
Sbjct: 264 PKLIVEFARAGLTEPVLIRLDVDTKLSEQLKLSFFS-LRLDDKPALLLHLLRNVVKPQEQ 322
Query: 269 TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA- 327
T++FV T LK L + + S L AR ++ +F +++ +D A
Sbjct: 323 TVVFVATKHHVEYLKELLSAEGVDCSCIYSALDQTARKISIGRFVHRKVMLLLVTDVAAR 382
Query: 328 -LETPQINSTNN 338
++ P +++ N
Sbjct: 383 GIDIPLLDNVIN 394
Score = 111 (44.1 bits), Expect = 1.6e-35, Sum P(2) = 1.6e-35
Identities = 23/54 (42%), Positives = 31/54 (57%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND 403
+RGID + NVIN++FP + ++HR GR AR GTA S V E + D
Sbjct: 381 ARGIDIPLLDNVINYNFPCKPKLFLHRVGRVARAGRGGTAYSLVCPDEVPYLYD 434
>FB|FBgn0004419 [details] [associations]
symbol:me31B "maternal expression at 31B" species:7227
"Drosophila melanogaster" [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS;NAS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IDA] [GO:0000932 "cytoplasmic
mRNA processing body" evidence=IDA] [GO:0033962 "cytoplasmic mRNA
processing body assembly" evidence=IMP] [GO:0005875 "microtubule
associated complex" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0007095 "mitotic G2 DNA damage checkpoint"
evidence=IGI] [GO:0043186 "P granule" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005875 GO:GO:0007095 EMBL:AE014134 GO:GO:0003723
GO:GO:0000932 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0033962 GO:GO:0004004 eggNOG:COG0513
GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 EMBL:M59926 EMBL:AY051663
PIR:A39157 RefSeq:NP_523533.2 RefSeq:NP_723539.1 UniGene:Dm.2770
ProteinModelPortal:P23128 SMR:P23128 IntAct:P23128 MINT:MINT-769276
STRING:P23128 PaxDb:P23128 PRIDE:P23128 EnsemblMetazoa:FBtr0079975
GeneID:34364 KEGG:dme:Dmel_CG4916 CTD:34364 FlyBase:FBgn0004419
InParanoid:P23128 OrthoDB:EOG45QFVG PhylomeDB:P23128 ChiTaRS:me31B
GenomeRNAi:34364 NextBio:788139 Bgee:P23128 GermOnline:CG4916
Uniprot:P23128
Length = 459
Score = 322 (118.4 bits), Expect = 1.7e-35, Sum P(2) = 1.7e-35
Identities = 103/337 (30%), Positives = 167/337 (49%)
Query: 23 FTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQK 79
F FC+ L I + GW P+ IQE AIP+ L KDVL RA+ G+GKTGA+ IP++++
Sbjct: 60 FEEFCLKRELLMGIFEKGWERPSPIQEAAIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 119
Query: 80 IINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL 139
I K Q ALV+ P++EL Q + EL D++ V ++ + + L
Sbjct: 120 IDPTKDYIQ-----ALVMVPTRELALQTSQICIELAKHL--DIR-VMVTTGGTILKDDIL 171
Query: 140 LV-ERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPK 198
+ ++ +++ATP R L + K D+ S I+++DEAD + S ++ + V+ LPK
Sbjct: 172 RIYQKVQLIIATPGRILDLMDKKVADM-SHCRILVLDEADKLLSLDFQGMLDHVILKLPK 230
Query: 199 LYQAILASATLSEDVLSLKHLILRNPVILKL-EEPAIAPVSQLAHYHILAQEDEKATILY 257
Q +L SAT V + LR P + L EE + V+Q Y+ QE +K L
Sbjct: 231 DPQILLFSATFPLTVKNFMEKHLREPYEINLMEELTLKGVTQ---YYAFVQERQKVHCLN 287
Query: 258 TLL-KLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGL 316
TL KL + Q +IIF N+ + L + + +++++ R + F QGL
Sbjct: 288 TLFSKLQINQ--SIIFCNSTQRVELLAKKITELGYCCYYIHAKMAQAHRNRVFHDFRQGL 345
Query: 317 YDVIIASD--EKALETPQINSTNNRKRKRDKESGVSR 351
++ SD + ++ +N N R E+ + R
Sbjct: 346 CRNLVCSDLFTRGIDVQAVNVVINFDFPRMAETYLHR 382
Score = 111 (44.1 bits), Expect = 1.7e-35, Sum P(2) = 1.7e-35
Identities = 23/52 (44%), Positives = 35/52 (67%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQ-DL 400
+RGID Q V+ VINFDFP + Y+HR GR+ R + G A++ ++ ++ DL
Sbjct: 356 TRGIDVQAVNVVINFDFPRMAETYLHRIGRSGRFGHLGIAINLITYEDRFDL 407
>DICTYBASE|DDB_G0288501 [details] [associations]
symbol:ddx42 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0288501 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000154_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AAFI02000112 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
KO:K12835 RefSeq:XP_636700.1 ProteinModelPortal:Q54IV3
STRING:Q54IV3 EnsemblProtists:DDB0233432 GeneID:8626657
KEGG:ddi:DDB_G0288501 OMA:DRDKRGG Uniprot:Q54IV3
Length = 986
Score = 347 (127.2 bits), Expect = 1.7e-35, Sum P(2) = 1.7e-35
Identities = 103/330 (31%), Positives = 165/330 (50%)
Query: 28 IPLQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTA 87
I LQAIAK PT IQ++AIP+ L +D++ A+TGSGKT F P I I++
Sbjct: 315 ILLQAIAKQSIETPTPIQKQAIPIALSGRDLIAIAKTGSGKTATFIWPSISHIMDQPYLE 374
Query: 88 QVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL--LVERPD 145
+ AL L+P++EL +Q++ T+K S+ K VS Q+ L +
Sbjct: 375 KGDGPIALFLAPTRELAHQIYLE----TLKYSKYFKLKTTVLYGGVSKQQQCKELKAGCE 430
Query: 146 IVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILA 205
I+VATP R + +K K L + + +++DEAD +F FG+ + +++ + Q +L
Sbjct: 431 IIVATPGRLIDMIKLKATKL-NRVSYLVLDEADKMFDFGFGPQVLSIVNHVRPDRQTLLF 489
Query: 206 SATLSEDVLSLKHLILRNPVILKLEE--PAIAPVSQLAHYHILAQEDEKATILYTLLKLN 263
SAT +V IL +P+ + + A + ++Q+ +L + +K L L L
Sbjct: 490 SATFKPNVEEFARTILSDPIKISIGMIGSANSDITQIVQ--VLKSDSDKWNWLTNQLALL 547
Query: 264 LVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIAS 323
L QG +IFV+T +L L +F TC L+ + R + F +G +++IA+
Sbjct: 548 LSQGSVLIFVSTKVAVEQLSSNLTKFGFQTCTLHGDKNQIERSQTIQTFKEGKINILIAT 607
Query: 324 DEKA--LETPQINSTNNRKRKRDKESGVSR 351
D A L+ P I + N RD ES R
Sbjct: 608 DVAARGLDIPLIKNVVNYDTSRDIESHTHR 637
Score = 108 (43.1 bits), Expect = 1.7e-35, Sum P(2) = 1.7e-35
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLRE 397
+RG+D + NV+N+D DI+ + HR GRT R N G A + ++ ++
Sbjct: 611 ARGLDIPLIKNVVNYDTSRDIESHTHRIGRTGRAGNTGVAYTLITPKD 658
>CGD|CAL0003050 [details] [associations]
symbol:HAS1 species:5476 "Candida albicans" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IGI;ISS] [GO:0042274
"ribosomal small subunit biogenesis" evidence=IGI;ISS] [GO:0030686
"90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005635 "nuclear envelope" evidence=IEA]
[GO:0030687 "preribosome, large subunit precursor" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0003050 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 GO:GO:0042274
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000012
InterPro:IPR025313 Pfam:PF13959 KO:K13179 EMBL:AACQ01000011
RefSeq:XP_721871.1 RefSeq:XP_722031.1 STRING:Q5AK59 GeneID:3636361
GeneID:3636443 KEGG:cal:CaO19.11444 KEGG:cal:CaO19.3962
Uniprot:Q5AK59
Length = 565
Score = 341 (125.1 bits), Expect = 2.1e-35, Sum P(2) = 2.1e-35
Identities = 93/313 (29%), Positives = 171/313 (54%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++AI ++G+ + T +Q + IP +L +DVL A+TGSGKT AF IP I+ + +LK +
Sbjct: 120 MKAIKEMGFTKMTKVQAKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIELLYSLKIKPR- 178
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T ++++P++EL Q+ +EL S+ C + D + L + +++VA
Sbjct: 179 NGTAVIIITPTRELALQIFGVARELMQFHSQT--CGIVIGGADRRQEATKLAKGVNLLVA 236
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLP-KLYQAILASAT 208
TP R L HLK T + S+L+ ++IDEAD + G+ED+MK ++K LP + Q++L SAT
Sbjct: 237 TPGRLLDHLK-NTQFVFSNLKALVIDEADRILEIGFEDEMKQIIKVLPNENRQSMLFSAT 295
Query: 209 LSEDVLSLKHLILR-NPVILKL-EEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQ 266
+ V L + LR P+ + + E ++ L +++ D++ +L++ LK N V+
Sbjct: 296 QTTKVEDLARISLRPGPLYINVVPEKDVSTADGLEQGYVVCDSDKRFLLLFSFLKRN-VK 354
Query: 267 GKTIIFVNTVDKCYKLKLY---LEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIAS 323
K I+F+++ C +K Y L + L+ + + R + ++F +++ +
Sbjct: 355 KKIIVFLSS---CNSVKFYSELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQGILVCT 411
Query: 324 DEKA--LETPQIN 334
D A L+ P ++
Sbjct: 412 DVAARGLDIPAVD 424
Score = 101 (40.6 bits), Expect = 2.1e-35, Sum P(2) = 2.1e-35
Identities = 22/49 (44%), Positives = 32/49 (65%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARG-KNQGTALSFVSLRE 397
+RG+D V ++ FD P D + YIHR GRTARG + +G +L F++ E
Sbjct: 415 ARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGTQGKGKSLMFLTPSE 463
>UNIPROTKB|Q5AK59 [details] [associations]
symbol:HAS1 "ATP-dependent RNA helicase HAS1"
species:237561 "Candida albicans SC5314" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IGI] [GO:0042274 "ribosomal small
subunit biogenesis" evidence=IGI] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0003050
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004
GO:GO:0042274 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AACQ01000012 InterPro:IPR025313 Pfam:PF13959 KO:K13179
EMBL:AACQ01000011 RefSeq:XP_721871.1 RefSeq:XP_722031.1
STRING:Q5AK59 GeneID:3636361 GeneID:3636443 KEGG:cal:CaO19.11444
KEGG:cal:CaO19.3962 Uniprot:Q5AK59
Length = 565
Score = 341 (125.1 bits), Expect = 2.1e-35, Sum P(2) = 2.1e-35
Identities = 93/313 (29%), Positives = 171/313 (54%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++AI ++G+ + T +Q + IP +L +DVL A+TGSGKT AF IP I+ + +LK +
Sbjct: 120 MKAIKEMGFTKMTKVQAKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIELLYSLKIKPR- 178
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T ++++P++EL Q+ +EL S+ C + D + L + +++VA
Sbjct: 179 NGTAVIIITPTRELALQIFGVARELMQFHSQT--CGIVIGGADRRQEATKLAKGVNLLVA 236
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLP-KLYQAILASAT 208
TP R L HLK T + S+L+ ++IDEAD + G+ED+MK ++K LP + Q++L SAT
Sbjct: 237 TPGRLLDHLK-NTQFVFSNLKALVIDEADRILEIGFEDEMKQIIKVLPNENRQSMLFSAT 295
Query: 209 LSEDVLSLKHLILR-NPVILKL-EEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQ 266
+ V L + LR P+ + + E ++ L +++ D++ +L++ LK N V+
Sbjct: 296 QTTKVEDLARISLRPGPLYINVVPEKDVSTADGLEQGYVVCDSDKRFLLLFSFLKRN-VK 354
Query: 267 GKTIIFVNTVDKCYKLKLY---LEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIAS 323
K I+F+++ C +K Y L + L+ + + R + ++F +++ +
Sbjct: 355 KKIIVFLSS---CNSVKFYSELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQGILVCT 411
Query: 324 DEKA--LETPQIN 334
D A L+ P ++
Sbjct: 412 DVAARGLDIPAVD 424
Score = 101 (40.6 bits), Expect = 2.1e-35, Sum P(2) = 2.1e-35
Identities = 22/49 (44%), Positives = 32/49 (65%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARG-KNQGTALSFVSLRE 397
+RG+D V ++ FD P D + YIHR GRTARG + +G +L F++ E
Sbjct: 415 ARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGTQGKGKSLMFLTPSE 463
>FB|FBgn0037573 [details] [associations]
symbol:eIF4AIII "eIF4AIII" species:7227 "Drosophila
melanogaster" [GO:0016281 "eukaryotic translation initiation factor
4F complex" evidence=ISS] [GO:0003743 "translation initiation
factor activity" evidence=ISS] [GO:0006413 "translational
initiation" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0045495 "pole plasm" evidence=IDA] [GO:0045451 "pole plasm
oskar mRNA localization" evidence=IGI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:0006974 "response to
DNA damage stimulus" evidence=IMP] [GO:0008380 "RNA splicing"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0016281
GO:GO:0006974 GO:GO:0003743 GO:GO:0071011 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0045451 GO:GO:0045495 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 ChiTaRS:EIF4A3
EMBL:AY089635 ProteinModelPortal:Q8SXH3 SMR:Q8SXH3 IntAct:Q8SXH3
STRING:Q8SXH3 PaxDb:Q8SXH3 PRIDE:Q8SXH3 FlyBase:FBgn0037573
InParanoid:Q8SXH3 OrthoDB:EOG4XWDD6 Bgee:Q8SXH3 Uniprot:Q8SXH3
Length = 399
Score = 293 (108.2 bits), Expect = 2.5e-35, Sum P(2) = 2.5e-35
Identities = 85/326 (26%), Positives = 169/326 (51%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ I G+ +P+ IQ+R+I I++ +DV+ +A++G+GKT F+I ++Q +L T +
Sbjct: 38 LRGIYAYGFEKPSAIQQRSITPIVKGRDVIAQAQSGTGKTATFSISILQ---SLDTT--L 92
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ET+ L LSP++EL Q+ K I L + +V+C ++ L IV
Sbjct: 93 RETQVLCLSPTRELAVQIQKVI--LALGDMMNVQCHVCIGGTNLGEDIRKLDYGQHIVSG 150
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R +K + L ++ ++++++DEAD + + G+++ + V ++LP Q +L SATL
Sbjct: 151 TPGRVFDMIKRRVLRTRA-IKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATL 209
Query: 210 SEDVLSLKHLILRNPV--ILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
++L + + +P+ ++K +E + + Q + + +E+ K L L L
Sbjct: 210 PHEILEMTSKFMTDPIRILVKRDELTLEGIKQF--FVAVEREEWKFDTLCDLYD-TLTIT 266
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD--E 325
+ +IF NT K L + + + ++ ++P K R + +F G V+I +D
Sbjct: 267 QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRAGQSRVLITTDVWA 326
Query: 326 KALETPQINSTNNRKRKRDKESGVSR 351
+ ++ Q++ N ++E + R
Sbjct: 327 RGIDVQQVSLVINYDLPNNRELYIHR 352
Score = 116 (45.9 bits), Expect = 2.5e-35, Sum P(2) = 2.5e-35
Identities = 24/54 (44%), Positives = 35/54 (64%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND 403
+RGID Q VS VIN+D P + + YIHR GR+ R +G A++FV + ++ D
Sbjct: 326 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRD 379
Score = 47 (21.6 bits), Expect = 4.2e-28, Sum P(2) = 4.2e-28
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 404 GTALSFVSLREQDLMNDVNEYLMTNLHE 431
G A++FV + ++ D+ +Y T + E
Sbjct: 363 GVAINFVKSDDIRILRDIEQYYSTQIDE 390
>UNIPROTKB|I3LQ10 [details] [associations]
symbol:LOC100626268 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 Ensembl:ENSSSCT00000028964 OMA:RYLVALC
Uniprot:I3LQ10
Length = 684
Score = 343 (125.8 bits), Expect = 2.6e-35, Sum P(2) = 2.6e-35
Identities = 93/305 (30%), Positives = 162/305 (53%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AI +G+ +PT IQ+ IP+ L KD+ A TG+GKT AFA+P+++++I + A V
Sbjct: 223 LKAITVMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYKPRQAPV 282
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVD--ISEQVDVSVQEPLL-VERPDI 146
T+ LVL P++EL Q+H ++L + + + +DV QE L PDI
Sbjct: 283 --TRVLVLVPTRELGIQVHSVTKQLAQSSLCVITTISGLFAGGLDVKSQEAALRAAXPDI 340
Query: 147 VVATPARALAHL-KAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILA 205
++ATP R + HL + L SS+E++I+DEAD + +E+ MK +++ Q +L
Sbjct: 341 LIATPGRLIDHLHNCPSFHL-SSIEVLILDEADRMLDEYFEEQMKEIIRMCSLHRQTMLF 399
Query: 206 SATLSEDVLSLKHLILRNPV-ILKLEEPAIAPVSQLAHYHILA-QEDEKATILYTLLKLN 263
SAT++++V L + L+NPV I +AP + I +E ++ I+ LL +
Sbjct: 400 SATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALL-MR 458
Query: 264 LVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKAR-CHAVYQFNQGLYDVIIA 322
++F T + +++ + L + L+ L R A+++F D+++A
Sbjct: 459 TFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRXLEALWRFKDEQIDILVA 518
Query: 323 SDEKA 327
+D A
Sbjct: 519 TDVAA 523
Score = 104 (41.7 bits), Expect = 2.6e-35, Sum P(2) = 2.6e-35
Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFV 393
+RG+D + V VINF P I+ Y+HR GRTAR G ++S +
Sbjct: 523 ARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLL 566
>POMBASE|SPAC30D11.03 [details] [associations]
symbol:ddx27 "ATP-dependent RNA helicase Ddx27/Drs1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC30D11.03 GO:GO:0005524 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000265456 KO:K13181 OrthoDB:EOG4B01XM PIR:S62561
RefSeq:NP_593214.1 ProteinModelPortal:Q09903 STRING:Q09903
EnsemblFungi:SPAC30D11.03.1 GeneID:2543155 KEGG:spo:SPAC30D11.03
NextBio:20804181 Uniprot:Q09903
Length = 754
Score = 348 (127.6 bits), Expect = 2.7e-35, Sum P(2) = 2.7e-35
Identities = 89/298 (29%), Positives = 161/298 (54%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ ++ LG+ PT IQ++ IPL L KD++ A TGSGKT AF +P+++++ L + +V
Sbjct: 271 LKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILERL--LYRPKKV 328
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T+ L+L P++EL Q H ++ V C+ I + + +QE L +RPDIV+A
Sbjct: 329 PTTRVLILCPTRELAMQCHSVATKIASFTDIMV-CLCIGG-LSLKLQEQELRKRPDIVIA 386
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + H++ ++EI+++DEAD + G+ D++ +++ PK Q +L SAT+
Sbjct: 387 TPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQACPKSRQTMLFSATM 446
Query: 210 SEDVLSLKHLILRNPVILKLE-EPAIAPVSQLAHYHILAQED--EKATILYTLLKLNLVQ 266
++ V L L L PV + ++ + A + + Q + A ++Y L K L
Sbjct: 447 TDKVDDLIRLSLNRPVRVFVDNKKTTAKLLTQEFVRVRPQRELLRPAMLIY-LCK-ELFH 504
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
+TIIF + +K+++ ++ ++ L + R A+ F G + ++A+D
Sbjct: 505 RRTIIFFRSKAFAHKMRVIFGLLSLNATEIHGSLSQEQRVRALEDFRDGKCNYLLATD 562
Score = 100 (40.3 bits), Expect = 2.7e-35, Sum P(2) = 2.7e-35
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALS 391
SRGID + + VIN++ P + Y+HR GRTAR G A++
Sbjct: 565 SRGIDIKGIEVVINYEAPATHEVYLHRVGRTARAGRSGRAIT 606
>DICTYBASE|DDB_G0281711 [details] [associations]
symbol:ddx27 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0281711 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000152_GR GO:GO:0042254 GO:GO:0003723
EMBL:AAFI02000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_640597.1 HSSP:Q5STU4 ProteinModelPortal:Q54TJ4
STRING:Q54TJ4 EnsemblProtists:DDB0234201 GeneID:8623207
KEGG:ddi:DDB_G0281711 OMA:SEYRAIR Uniprot:Q54TJ4
Length = 783
Score = 389 (142.0 bits), Expect = 3.4e-35, P = 3.4e-35
Identities = 122/447 (27%), Positives = 228/447 (51%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+ KLG+ +PT IQ +AIPL L KD+L A TGSGKT AF +P+++++ L + ++
Sbjct: 202 LKAVQKLGFSQPTPIQAKAIPLALNGKDILASASTGSGKTAAFLLPVLERL--LFRDSEY 259
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ + L+L P++EL Q +++ E + S C+ + + QE L + PD+V+A
Sbjct: 260 RAIRVLILLPTRELALQC-QSVMENLAQFSNITSCLIVGG-LSNKAQEVELRKSPDVVIA 317
Query: 150 TPARALAHL-KAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
TP R + HL A + L LEI+I+DEAD + G++D++ +++ P Q +L SAT
Sbjct: 318 TPGRLIDHLLNAHGIGL-DDLEILILDEADRLLDMGFKDEINKIVESCPTNRQTMLFSAT 376
Query: 209 LSEDVLSLKHLILRNPVILKLEE-PAIAPVSQLAHYHILAQE-DEKATILYTLLKLNLVQ 266
L+++V +L L L+ P+ ++++ + + I Q ++ IL +L Q
Sbjct: 377 LNDEVKTLAKLSLQQPIRVQVDALMQVTSTLEQEFVKIKPQHLSDRPAILLSLCTRVFNQ 436
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD-- 324
G TIIF + + ++L++ + L+ L + R ++ QF G + ++ASD
Sbjct: 437 GGTIIFCRSKKEVHRLRIIFGLSDLKAAELHGNLSQEQRFDSLQQFRDGQVNYLLASDVA 496
Query: 325 EKALETPQI------NSTNNRKRKRDKESGVSR-GIDFQFVSNVINFDFPLDIQCYIHRA 377
+ L+ + N NN + +R G+D + S + + D L ++ + +A
Sbjct: 497 SRGLDIIGVKTVINYNMPNNMANYIHRVGRTARAGMDGKSCSFITDNDRKL-LKDIVTKA 555
Query: 378 GRTARGKNQGTA-LSFVSLREQDLMNDGTALSFVSLREQDLMN-----DVNEYLMTNLHE 431
A+ ++ ++F R ++L D ++ ++E DL D E +++N
Sbjct: 556 RNKAKSRSVSQDNVNFWRNRIEELTEDIKSIVREEMKEADLRKAEKTLDKAEKIISNA-- 613
Query: 432 DDFIIKPYQFNLDEVKGFEYRAKDAWR 458
D + P + + K E ++K+ W+
Sbjct: 614 DANVETPKVWY--KTKQEEDKSKELWK 638
>UNIPROTKB|P54475 [details] [associations]
symbol:cshB "DEAD-box ATP-dependent RNA helicase CshB"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0009409 "response to cold" evidence=IGI]
[GO:0043590 "bacterial nucleoid" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0009409 GO:GO:0003723 EMBL:AL009126 GenomeReviews:AL009126_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
EMBL:D84432 PIR:D69954 RefSeq:NP_390393.1 ProteinModelPortal:P54475
SMR:P54475 IntAct:P54475 EnsemblBacteria:EBBACT00000001897
GeneID:937908 KEGG:bsu:BSU25140 PATRIC:18976864 GenoList:BSU25140
HOGENOM:HOG000268806 OMA:YAHVEPK ProtClustDB:CLSK2301471
BioCyc:BSUB:BSU25140-MONOMER Uniprot:P54475
Length = 438
Score = 298 (110.0 bits), Expect = 3.5e-35, Sum P(3) = 3.5e-35
Identities = 84/299 (28%), Positives = 155/299 (51%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
+ A+ +LG+ EPT IQ+R IP +L+ + V+ +++TG+GKT A+ +P++ KI K QV
Sbjct: 16 IDAVHRLGFYEPTDIQKRLIPAVLKKESVIGQSQTGTGKTHAYLLPLLNKIDPAKDVVQV 75
Query: 90 QETKALVLSPSKELCNQLHKNIQELTM-KCSRDV--KCVDISEQVDVSVQEPLLVERPDI 146
++ +P++EL NQ+++ ++T + + KC S+ + L +P +
Sbjct: 76 -----VITAPTRELANQIYQEALKITQGEEGSQIRSKCFIGGTDKQKSIDK--LKIQPHL 128
Query: 147 VVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
VV TP R +K + L + + E ++IDEADL+ G+ D+ + +P+ Q ++ S
Sbjct: 129 VVGTPGRIADLIKEQALSVHKA-ESLVIDEADLMLDMGFLADVDYIGSRMPEDLQMLVFS 187
Query: 207 ATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLK-LNLV 265
AT+ E + + NP +E P +++ H I ++ +K +L+ ++ LN
Sbjct: 188 ATIPEKLKPFLKKYMENPKYAHVE-PKQVTAAKIEHILIPSKHRDKDKLLFDIMSHLNPY 246
Query: 266 QGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
G I+F NT + + YL + +L+ L + R + Q N + IIA+D
Sbjct: 247 LG--IVFANTKNTADHIAQYLTGKGMKIGLLHGGLTPRERKKVMKQINDLEFTYIIATD 303
Score = 129 (50.5 bits), Expect = 3.5e-35, Sum P(3) = 3.5e-35
Identities = 23/52 (44%), Positives = 36/52 (69%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLM 401
+RGID + VS+VIN++ P D+ Y+HR GRTAR + G A++ L ++D +
Sbjct: 306 ARGIDIKGVSHVINYELPDDLDFYVHRVGRTARAGSSGQAMTIYELTDEDAL 357
Score = 39 (18.8 bits), Expect = 3.5e-35, Sum P(3) = 3.5e-35
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 1 AIAKLGWLEPTLIQ 14
A+ +LG+ EPT IQ
Sbjct: 18 AVHRLGFYEPTDIQ 31
>ASPGD|ASPL0000062195 [details] [associations]
symbol:AN10125 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:BN001308 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:RIRKRDH EnsemblFungi:CADANIAT00001822 Uniprot:C8VQD7
Length = 814
Score = 347 (127.2 bits), Expect = 4.1e-35, Sum P(2) = 4.1e-35
Identities = 86/326 (26%), Positives = 168/326 (51%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ +A + + PT IQ++ IP+ L KD++ A TGSGKT AF +P+++++ L + +V
Sbjct: 310 LRGLAAVNFTNPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERL--LFRPRKV 367
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
++ +L P++EL Q + +L D+ + + QE +L +RPD+++A
Sbjct: 368 PTSRVAILMPTRELAVQCYNVATKLATYT--DITFCQLVGGFSLREQENVLKKRPDVIIA 425
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + H++ +LEI+++DEAD + G+ D++ +L +PK Q +L SAT+
Sbjct: 426 TPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTMLFSATM 485
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHIL--AQEDEKATILYTLLKLNLVQG 267
++ V L + L PV L ++ V+ + + L +ED++ L L K + G
Sbjct: 486 TDSVDKLIRVGLNRPVRLMVDTKKNTAVTLVQEFVRLRPGREDKRLGYLLHLCK-EVYTG 544
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD--E 325
+ I+F + +++++ + L+ + + R +V F G + ++A+D
Sbjct: 545 RVIVFFRQKKEAHRVRIVFGLLGLKAAELHGSMSQEQRIKSVESFRDGNVNFLLATDLAS 604
Query: 326 KALETPQINSTNNRKRKRDKESGVSR 351
+ L+ + + N + + E V R
Sbjct: 605 RGLDIKGVETVINYEAPQSHEIYVHR 630
Score = 101 (40.6 bits), Expect = 4.1e-35, Sum P(2) = 4.1e-35
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVS 394
SRG+D + V VIN++ P + Y+HR GRTAR G A + +
Sbjct: 604 SRGLDIKGVETVINYEAPQSHEIYVHRVGRTARAGRSGRACTIAA 648
>ASPGD|ASPL0000013201 [details] [associations]
symbol:AN4233 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 EMBL:BN001302
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 EMBL:AACD01000068 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
RefSeq:XP_661837.1 ProteinModelPortal:Q5B5E7 SMR:Q5B5E7
STRING:Q5B5E7 EnsemblFungi:CADANIAT00004427 GeneID:2873652
KEGG:ani:AN4233.2 OrthoDB:EOG4ZPJ3P Uniprot:Q5B5E7
Length = 465
Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
Identities = 105/325 (32%), Positives = 168/325 (51%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ 90
+A +G+ PT IQ +AIPL L+ +DV+ A TGSGKT AFA+PM+Q ++ QT
Sbjct: 59 EACENMGYKAPTPIQSQAIPLALEGRDVIGLAETGSGKTAAFALPMLQALMEAPQTLF-- 116
Query: 91 ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVAT 150
LVL+P++EL Q+ + + T+ + V+C I +D+ Q L ++P I+VAT
Sbjct: 117 ---GLVLAPTRELAYQISQAFE--TLGSTIGVRCAVIVGGMDMVAQSIALGKKPHIIVAT 171
Query: 151 PARALAHLK-AKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
P R L HL+ K L++ L+ + IDEAD + + + + +++ LP+ L SAT+
Sbjct: 172 PGRLLDHLENTKGFSLRN-LKYLAIDEADRLLDMDFGESLDKIIRILPRTRHTYLFSATM 230
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
S V SL+ L NPV + + VS L +I K LY + LN G++
Sbjct: 231 STKVESLQRASLSNPVRVSVSSK-YQTVSTLQSSYICIPHKHKN--LYLVYLLNEFAGQS 287
Query: 270 -IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA- 327
IIF TV + ++ L L+ +L AR A+ +F D+++A+D A
Sbjct: 288 AIIFTTTVHETQRVAFMLRALGFGAIPLHGQLSQSARLGALGKFRSRSRDILVATDVAAR 347
Query: 328 -LETPQINSTNNRKRKRDKESGVSR 351
L+ P ++ N D ++ + R
Sbjct: 348 GLDIPSVDVVFNFDLPMDSKTYIHR 372
Score = 130 (50.8 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 28/59 (47%), Positives = 34/59 (57%)
Query: 339 RKRKRD---KESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVS 394
R R RD +RG+D V V NFD P+D + YIHR GRTAR G A+SFV+
Sbjct: 332 RSRSRDILVATDVAARGLDIPSVDVVFNFDLPMDSKTYIHRVGRTARAGKSGVAISFVT 390
>TAIR|locus:504955106 [details] [associations]
symbol:emb1138 "embryo defective 1138" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0009570 "chloroplast stroma"
evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0009941
"chloroplast envelope" evidence=IDA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00098 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009570 GO:GO:0016020 GO:GO:0046872 GO:GO:0008270
GO:GO:0009941 GO:GO:0003723 EMBL:AF058914 Gene3D:4.10.60.10
SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268805 UniGene:At.23875 EMBL:AJ010457 EMBL:AC137518
EMBL:AY080625 EMBL:AY091068 EMBL:AY094485 EMBL:AY123000
EMBL:AY128278 EMBL:BT000713 EMBL:BT002289 EMBL:BT002456
EMBL:AY102126 EMBL:BT004533 EMBL:AK229821 IPI:IPI00523172
IPI:IPI00656967 PIR:T01202 PIR:T51738 RefSeq:NP_001031943.1
RefSeq:NP_680225.2 UniGene:At.66764 ProteinModelPortal:Q8L7S8
SMR:Q8L7S8 STRING:Q8L7S8 PaxDb:Q8L7S8 PRIDE:Q8L7S8
EnsemblPlants:AT5G26742.2 GeneID:832713 KEGG:ath:AT5G26742
GeneFarm:1570 TAIR:At5g26742 InParanoid:Q8L7S8 OMA:ISHEQGW
PhylomeDB:Q8L7S8 ProtClustDB:CLSN2680279 Genevestigator:Q8L7S8
Uniprot:Q8L7S8
Length = 748
Score = 334 (122.6 bits), Expect = 5.3e-35, Sum P(2) = 5.3e-35
Identities = 100/331 (30%), Positives = 171/331 (51%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLK--QTAQ 88
+++ K G IQ + LQ +D++ RA+TG+GKT AF IP+I+++ TA
Sbjct: 115 ESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAF 174
Query: 89 VQE---TKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPD 145
+ K LVL+P++EL Q+ K I+E S CV V ++Q+ L D
Sbjct: 175 RRSGRLPKFLVLAPTRELAKQVEKEIKESAPYLS--TVCV--YGGVSYTIQQSALTRGVD 230
Query: 146 IVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILA 205
+VV TP R + ++ ++L L +E +++DEAD + + G+E+ ++++L+ LP Q++L
Sbjct: 231 VVVGTPGRIIDLIEGRSLKL-GEVEYLVLDEADQMLAVGFEEAVESILENLPTKRQSMLF 289
Query: 206 SATLSEDVLSLKHLILRNPVILKL---EEPAIAPVSQLAHYHILAQEDEKATILYTLLKL 262
SAT+ V L L NP+ + L ++ +A +L Y I K TIL L+ +
Sbjct: 290 SATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKL--YAIATTSTSKRTILSDLITV 347
Query: 263 NLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIA 322
GKTI+F T ++ L L I+T L+ ++ R + F QG + V++A
Sbjct: 348 YAKGGKTIVFTQTKRDADEVSLALSN-SIATEALHGDISQHQRERTLNAFRQGKFTVLVA 406
Query: 323 SD--EKALETPQINSTNNRKRKRDKESGVSR 351
+D + L+ P ++ + + D E+ V R
Sbjct: 407 TDVASRGLDIPNVDLVIHYELPNDPETFVHR 437
Score = 114 (45.2 bits), Expect = 5.3e-35, Sum P(2) = 5.3e-35
Identities = 42/145 (28%), Positives = 67/145 (46%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTA-LSFVSLREQ---DLMND-G 404
SRG+D V VI+++ P D + ++HR+GRT R +G+A L S +++ L D G
Sbjct: 411 SRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRSLERDVG 470
Query: 405 TALSFVSLREQ-DLMNDVNEYLMTNL---HEDD--FIIKPYQFNLDEVKGFEYRAKDAWR 458
F+S DL+ + ++ L H D F Q L E KG + A
Sbjct: 471 CHFEFISPPTVGDLLESSADQVVATLNGVHPDSIKFFSATAQ-KLYEEKGTDALAAALAH 529
Query: 459 SNYFEDNPTDLETLRHDKALYTVRI 483
+ F P+ L H+K T+++
Sbjct: 530 LSGFSQPPSSRSLLSHEKGWVTLQL 554
>ZFIN|ZDB-GENE-031030-3 [details] [associations]
symbol:ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
49" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031030-3 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K14778
HOVERGEN:HBG100512 CTD:54555 EMBL:BC047834 IPI:IPI00551936
RefSeq:NP_938179.1 UniGene:Dr.77634 ProteinModelPortal:Q7ZUT9
STRING:Q7ZUT9 GeneID:386632 KEGG:dre:386632 InParanoid:Q7ZUT9
NextBio:20813961 ArrayExpress:Q7ZUT9 Uniprot:Q7ZUT9
Length = 468
Score = 329 (120.9 bits), Expect = 5.9e-35, Sum P(2) = 5.9e-35
Identities = 93/319 (29%), Positives = 163/319 (51%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
+Q ++G PT +QE+ IP IL +D + A+TGSGKT AF +P++QK+ +
Sbjct: 14 IQQCKQMGISRPTAVQEKCIPAILDGRDCMGCAKTGSGKTAAFVLPVLQKL-----SEDP 68
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCS-RDVKCVDISEQVDVSVQEPLLVERPDIVV 148
LVL+P++EL Q+ + + L +D C+ + +D+ Q L ++P +VV
Sbjct: 69 YGVFCLVLTPTRELAYQIAEQFRVLGKPLGLKD--CIIVGG-MDMVTQGLELSKKPHVVV 125
Query: 149 ATPARALAHLKAK-TLDLKSSLEIVIIDEADLVFSFGYED---DMKAVLKFLPKLYQAIL 204
ATP R H+++ T++L + ++ +I+DEAD + G D D++ +L +P Q +L
Sbjct: 126 ATPGRLADHIRSSDTINL-NRIQFLIMDEADRLLEQGCTDFTKDLEVILSAVPAKRQTLL 184
Query: 205 ASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNL 264
SATL++ + L+ + + P + + + V +L IL E K L L++
Sbjct: 185 FSATLTDTLQQLQSIAMNRPFFWE-HKSDVQTVEELDQRFILTPEKVKDAYLVHLIQTFQ 243
Query: 265 VQG---KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVII 321
+ IIF NT C L + L +F T L+S + + R + +F ++ ++I
Sbjct: 244 DEHDDWSIIIFTNTCKSCQILTMMLREFNFPTISLHSMMKQRQRFANLAKFKSNVFKILI 303
Query: 322 ASDEKA--LETPQINSTNN 338
A+D A L+ P + N
Sbjct: 304 ATDVAARGLDIPTVQVVIN 322
Score = 98 (39.6 bits), Expect = 5.9e-35, Sum P(2) = 5.9e-35
Identities = 36/132 (27%), Positives = 61/132 (46%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMN-----DG 404
+RG+D V VIN + P + YIHR GRTAR G +++ V+ + L+N +
Sbjct: 309 ARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGVSITLVTQYDIHLINAIEEQNQ 368
Query: 405 TALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAK---DAWRSNY 461
T L + E++++ + + +T + IK + DE K R + D +
Sbjct: 369 TKLKEFPIEEKEVLKILTQVNVTRRQCE---IKLESTDFDEKKKINKRKQMILDGKDPDL 425
Query: 462 FEDNPTDLETLR 473
E +LE +R
Sbjct: 426 EEKRKNELEKIR 437
>UNIPROTKB|Q8EGU0 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 316 (116.3 bits), Expect = 1.3e-34, Sum P(2) = 1.3e-34
Identities = 92/299 (30%), Positives = 159/299 (53%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L AI + G+ + T +Q++ IPL L KD++ A+TG+GKT AFA+P+++++ + A
Sbjct: 13 LNAITECGYQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPVLEQLA--AKPADK 70
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ALV++P++EL Q+ NIQ+ + +K + + +++ Q + + DI+VA
Sbjct: 71 PLLRALVMTPTRELAIQVCANIQKYSQFLP--LKTLAVYGGANMNPQRKGVEQGVDILVA 128
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + LDL SS+ ++IDEAD + G+ D++ V + + ++Q +L SAT
Sbjct: 129 TPGRLFDIIGQFNLDL-SSVTTLVIDEADRMLDLGFVRDIEKVKRLIAPVHQTMLFSATY 187
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAP-VSQLAHYHILAQEDEKATILYTLLKLNLVQGK 268
S+ V L H +L P + + E A V QL Y + + KA +L L+ N + +
Sbjct: 188 SDAVKQLSHKMLNQPQWVNVAENTTASTVEQLV-YRV--DKRRKAELLSELVGRNNWR-Q 243
Query: 269 TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
++F +T + L L IS V + + AR + F G V++A+D A
Sbjct: 244 VLVFASTKECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGKLRVLVATDVAA 302
Score = 111 (44.1 bits), Expect = 1.3e-34, Sum P(2) = 1.3e-34
Identities = 23/58 (39%), Positives = 35/58 (60%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTAL 407
+RG+D Q + VIN + P + Y+HR GRT R G A+SFVS + +++ + AL
Sbjct: 302 ARGLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPADDEMLAEIEAL 359
>TIGR_CMR|SO_1501 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 316 (116.3 bits), Expect = 1.3e-34, Sum P(2) = 1.3e-34
Identities = 92/299 (30%), Positives = 159/299 (53%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L AI + G+ + T +Q++ IPL L KD++ A+TG+GKT AFA+P+++++ + A
Sbjct: 13 LNAITECGYQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPVLEQLA--AKPADK 70
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ALV++P++EL Q+ NIQ+ + +K + + +++ Q + + DI+VA
Sbjct: 71 PLLRALVMTPTRELAIQVCANIQKYSQFLP--LKTLAVYGGANMNPQRKGVEQGVDILVA 128
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + LDL SS+ ++IDEAD + G+ D++ V + + ++Q +L SAT
Sbjct: 129 TPGRLFDIIGQFNLDL-SSVTTLVIDEADRMLDLGFVRDIEKVKRLIAPVHQTMLFSATY 187
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAP-VSQLAHYHILAQEDEKATILYTLLKLNLVQGK 268
S+ V L H +L P + + E A V QL Y + + KA +L L+ N + +
Sbjct: 188 SDAVKQLSHKMLNQPQWVNVAENTTASTVEQLV-YRV--DKRRKAELLSELVGRNNWR-Q 243
Query: 269 TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
++F +T + L L IS V + + AR + F G V++A+D A
Sbjct: 244 VLVFASTKECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGKLRVLVATDVAA 302
Score = 111 (44.1 bits), Expect = 1.3e-34, Sum P(2) = 1.3e-34
Identities = 23/58 (39%), Positives = 35/58 (60%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTAL 407
+RG+D Q + VIN + P + Y+HR GRT R G A+SFVS + +++ + AL
Sbjct: 302 ARGLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPADDEMLAEIEAL 359
>UNIPROTKB|P21693 [details] [associations]
symbol:dbpA species:83333 "Escherichia coli K-12"
[GO:0003724 "RNA helicase activity" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0033677 "DNA/RNA helicase
activity" evidence=IDA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0000027 "ribosomal large subunit assembly" evidence=IMP]
[GO:0034459 "ATP-dependent 3'-5' RNA helicase activity"
evidence=IDA] [GO:0019843 "rRNA binding" evidence=IDA] [GO:0043531
"ADP binding" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0043531
GO:GO:0019843 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:X52647 PIR:B64884 RefSeq:NP_415859.1 RefSeq:YP_489613.1
ProteinModelPortal:P21693 SMR:P21693 IntAct:P21693 PRIDE:P21693
EnsemblBacteria:EBESCT00000004879 EnsemblBacteria:EBESCT00000014318
GeneID:12933991 GeneID:947153 KEGG:ecj:Y75_p1320 KEGG:eco:b1343
PATRIC:32117966 EchoBASE:EB0206 EcoGene:EG10210
HOGENOM:HOG000268809 KO:K05591 OMA:HIDPARF ProtClustDB:PRK11776
BioCyc:EcoCyc:EG10210-MONOMER BioCyc:ECOL316407:JW1337-MONOMER
BioCyc:MetaCyc:EG10210-MONOMER Genevestigator:P21693 GO:GO:0034459
GO:GO:0033677 InterPro:IPR005580 Pfam:PF03880 Uniprot:P21693
Length = 457
Score = 352 (129.0 bits), Expect = 1.8e-34, Sum P(2) = 1.8e-34
Identities = 101/334 (30%), Positives = 173/334 (51%)
Query: 24 TLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKI 80
TL +P L + +LG+L T +Q A+P IL KDV V+A+TGSGKT AF + ++Q+I
Sbjct: 6 TLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI 65
Query: 81 INLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLL 140
A + +T+ALVL P++EL +Q+ ++ L + + K + + +Q L
Sbjct: 66 -----DASLFQTQALVLCPTRELADQVAGELRRLA-RFLPNTKILTLCGGQPFGMQRDSL 119
Query: 141 VERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLY 200
P I+VATP R L HL+ T+ L +L +++DEAD + G+ D + V++F P
Sbjct: 120 QHAPHIIVATPGRLLDHLQKGTVSL-DALNTLVMDEADRMLDMGFSDAIDDVIRFAPASR 178
Query: 201 QAILASATLSEDVLSLKHLILRNPVILKLEEP-AIAPVSQLAHYHILAQEDEKATILYTL 259
Q +L SAT E + ++ + R+P+ ++++ A+ P+ Q ++ + + K +L L
Sbjct: 179 QTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQ--QFYETSSKG-KIPLLQRL 235
Query: 260 LKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDV 319
L L+ ++F NT C + L + S L+ +L + R + +F G V
Sbjct: 236 LSLHQ-PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARV 294
Query: 320 IIASDEKA--LETPQINSTNNRKRKRDKESGVSR 351
++A+D A L+ + N + D E V R
Sbjct: 295 LVATDVAARGLDIKSLELVVNFELAWDPEVHVHR 328
Score = 129 (50.5 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 33/123 (26%), Positives = 59/123 (47%)
Query: 282 LKLYLEQFKISTCVL--NSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNR 339
L+ L + S+CV+ N++ +A C A+ + Q + +++ + + N
Sbjct: 232 LQRLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGS 291
Query: 340 KRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQD 399
R +RG+D + + V+NF+ D + ++HR GRTAR N G A+SF + E
Sbjct: 292 ARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ 351
Query: 400 LMN 402
N
Sbjct: 352 RAN 354
Score = 41 (19.5 bits), Expect = 1.8e-34, Sum P(2) = 1.8e-34
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 402 NDGTALSFVSLREQDLMNDVNEYLMTNLH 430
N G A+SF + E N +++ L L+
Sbjct: 337 NSGLAISFCAPEEAQRANIISDMLQIKLN 365
>UNIPROTKB|Q0C354 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_759839.1 ProteinModelPortal:Q0C354 STRING:Q0C354
GeneID:4290097 KEGG:hne:HNE_1118 PATRIC:32215041 OMA:KHGSEKL
BioCyc:HNEP228405:GI69-1155-MONOMER Uniprot:Q0C354
Length = 464
Score = 317 (116.6 bits), Expect = 2.5e-34, Sum P(2) = 2.5e-34
Identities = 83/295 (28%), Positives = 151/295 (51%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L ++ K G+ PT IQE+AIPL++Q +D++ A+TG+GKT AFA P++ ++ A V
Sbjct: 19 LTSLTKAGYTAPTPIQEQAIPLVIQGRDIVGLAQTGTGKTLAFAAPILDRLSRNASPAPV 78
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ T+ LVL+P++EL Q+ + T +++ V + + Q L I+VA
Sbjct: 79 RGTRVLVLAPTRELAGQIATSFG--TYGAGLNLRVVMVCGGAKIGGQIRQLERGAHILVA 136
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + ++ + + L +E +I+DEAD + G+ ++A+ K +P Q + SAT+
Sbjct: 137 TPGRLIDLMEQRAVSL-DKVETLILDEADQMLDLGFIHALRAIAKNVPSKRQTLFFSATM 195
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+ V SL LRNP + + PA ++ ++ EKA++L ++ ++
Sbjct: 196 PKAVESLAATFLRNPAEVSVAPPATT-AGRIEQRVCFVEQPEKASLLIEKIRDPELRS-A 253
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
I+F T + L + I + ++ R A+ F G +++A+D
Sbjct: 254 IVFTRTKHGADGVVKRLAKADIDSVAIHGNKSQSQREKALEAFKAGRVPILVATD 308
Score = 109 (43.4 bits), Expect = 2.5e-34, Sum P(2) = 2.5e-34
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 350 SRGIDFQFVSNVINFDFPLDI-QCYIHRAGRTARGKNQGTALSFVSLREQ 398
+RGI +++VIN+D P D+ + ++HR GRTAR N G A+SF S E+
Sbjct: 311 ARGIHVDALTHVINYDLP-DVPEQFVHRIGRTARAGNSGVAISFCSRDER 359
>TIGR_CMR|CPS_1726 [details] [associations]
symbol:CPS_1726 "RNA helicase DeaD" species:167879
"Colwellia psychrerythraea 34H" [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 RefSeq:YP_268464.1 ProteinModelPortal:Q484Q1
STRING:Q484Q1 GeneID:3523325 KEGG:cps:CPS_1726 PATRIC:21466621
OMA:WIVKGVE ProtClustDB:CLSK741103
BioCyc:CPSY167879:GI48-1803-MONOMER Uniprot:Q484Q1
Length = 611
Score = 309 (113.8 bits), Expect = 2.6e-34, Sum P(2) = 2.6e-34
Identities = 90/324 (27%), Positives = 156/324 (48%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L A+ +G+ T IQ IP +L KDVL A+TG+GKT AF +P + KI +
Sbjct: 27 LSAVLSIGFTSATDIQALTIPPLLAGKDVLGEAQTGTGKTAAFGLPALAKI-----DTSI 81
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
++ + +VL+P++EL Q+ + I+ K + ++ + Q L +VV
Sbjct: 82 KKPQLMVLAPTRELAMQVAEAIESFG-KDMKGLRVATLYGGQSYGPQFQQLERGAQVVVG 140
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + HL+ K+L L L + ++DEAD + + G+ +D++ +L +PK Q L SAT+
Sbjct: 141 TPGRLMDHLRRKSLKL-DELRVCVLDEADEMLNMGFLEDIQWILDHIPKTAQMCLFSATM 199
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+ + + L++P +K+ A + + Y K T L + ++ +
Sbjct: 200 PPAIRKIANRFLKDPEHIKVAAVKKAKAN-ITQYAWKVSGITKMTALERIAEV-VEYDAM 257
Query: 270 IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD--EKA 327
IIFV T + + LE+ LN +L R + Q G +++A+D +
Sbjct: 258 IIFVRTRNDTVDIAEKLERAGYPALALNGDLNQAQRERCIDQMKSGKSSILVATDVVARG 317
Query: 328 LETPQINSTNNRKRKRDKESGVSR 351
L+ P+I+ N D E+ V R
Sbjct: 318 LDIPRISLVINYDLPGDNEAYVHR 341
Score = 132 (51.5 bits), Expect = 2.6e-34, Sum P(2) = 2.6e-34
Identities = 28/75 (37%), Positives = 45/75 (60%)
Query: 349 VSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFV------SLREQDLMN 402
V+RG+D +S VIN+D P D + Y+HR GRT R +G +++FV S+R + +
Sbjct: 314 VARGLDIPRISLVINYDLPGDNEAYVHRIGRTGRAGREGMSIAFVRPREMYSIRHYERLT 373
Query: 403 DGTALSFVSLREQDL 417
+GT L++ QD+
Sbjct: 374 NGTVLNYDLPNIQDI 388
>TIGR_CMR|CPS_1590 [details] [associations]
symbol:CPS_1590 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_268332.1 ProteinModelPortal:Q485D3
STRING:Q485D3 GeneID:3522084 KEGG:cps:CPS_1590 PATRIC:21466379
OMA:AISECGY ProtClustDB:CLSK768209
BioCyc:CPSY167879:GI48-1671-MONOMER Uniprot:Q485D3
Length = 455
Score = 341 (125.1 bits), Expect = 3.8e-34, Sum P(2) = 3.8e-34
Identities = 110/393 (27%), Positives = 193/393 (49%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQ- 88
L+A+ G+ T IQ+ AIP+I Q D+L A+TG+GKT AF++P++ I A+
Sbjct: 13 LKAVKACGYKNLTPIQQEAIPVIRQGVDLLASAQTGTGKTAAFSLPILDAIAKANHAAKS 72
Query: 89 ----VQETKALVLSPSKELCNQLHKN-IQELTMKCSRDVK----CVDISEQV-----DVS 134
E A S S + L +EL + + ++K + I V ++
Sbjct: 73 STTSTDENSAEEKSASGQAIRALILTPTRELANQVADNIKQFSQYLPIKSGVVYGGGKMA 132
Query: 135 VQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLK 194
Q +L + D++VATP R L HL + +DL S ++ +++DEAD + G+ D++ +L
Sbjct: 133 SQTKMLKQGLDVLVATPGRLLEHLALRNVDL-SQVKFLVLDEADRMLDMGFLTDIEKLLL 191
Query: 195 FLPKLYQAILASATLSEDVLSLKHLILRNPVILKL--EEPAIAPVSQLAHYHILAQEDEK 252
+ +Q ++ SAT S+ V SL + +L++P + + E + Q ++ E+ K
Sbjct: 192 AVKHKHQTLMFSATFSDRVKSLANQLLKSPKTISVSKENTTSGKIKQAVYW---VTEERK 248
Query: 253 ATILYTLLKLNLVQGKTIIFVNTVDKCYKL--KLYLEQFKISTCVLNSELPAKARCHAVY 310
+L L+ +N Q + ++F T + L +L L+ K + C + + AR A+
Sbjct: 249 RELLSELIGVNNWQ-QVLVFAGTKESANTLAKELKLDGIKAALC--HGDKTQGARNKALE 305
Query: 311 QFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDI 370
QF++G V++A+D A RG+D ++ V+NF P
Sbjct: 306 QFSEGKVRVLVATDVAA-----------------------RGLDIPDLAFVVNFHLPFLP 342
Query: 371 QCYIHRAGRTARGKNQGTALSFVSLREQDLMND 403
+ Y+HR GRT R GTA+S VS +++ + +
Sbjct: 343 EDYVHRVGRTGRAGKSGTAISLVSPKDERFLEN 375
Score = 51 (23.0 bits), Expect = 3.8e-34, Sum P(2) = 3.8e-34
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 404 GTALSFVSLREQDLMNDVNEYLMTNLHEDDFIIKP-YQFNLDEVKGFE 450
GTA+S VS +++ + ++ E L+ E I+ P Y+FN E ++
Sbjct: 359 GTAISLVSPKDERFLENI-EQLIERKFER--IVAPGYEFNRLEASEYQ 403
>WB|WBGene00000479 [details] [associations]
symbol:cgh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0051729 "germline cell cycle switching, mitotic
to meiotic cell cycle" evidence=IMP] [GO:0008219 "cell death"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0010467 "gene expression" evidence=IMP]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0043066 "negative
regulation of apoptotic process" evidence=IMP] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0043186 "P granule" evidence=IDA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IDA] [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0017148 "negative regulation of translation"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008340
GO:GO:0009792 GO:GO:0002009 GO:GO:0006898 GO:GO:0040007
GO:GO:0006915 GO:GO:0010467 GO:GO:0016071 GO:GO:0043066
GO:GO:0030154 GO:GO:0007052 GO:GO:0002119 GO:GO:0017148
GO:GO:0048477 GO:GO:0007283 GO:GO:0051729 GO:GO:0003723
GO:GO:0040035 GO:GO:0000932 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0007276 GO:GO:0008026 EMBL:FO080423
RefSeq:NP_498646.1 ProteinModelPortal:Q95YF3 SMR:Q95YF3
DIP:DIP-25457N IntAct:Q95YF3 MINT:MINT-250782 STRING:Q95YF3
PaxDb:Q95YF3 EnsemblMetazoa:C07H6.5.1 EnsemblMetazoa:C07H6.5.2
GeneID:176061 KEGG:cel:CELE_C07H6.5 UCSC:C07H6.5.1 CTD:176061
WormBase:C07H6.5 eggNOG:COG0513 GeneTree:ENSGT00530000063986
HOGENOM:HOG000268797 InParanoid:Q95YF3 KO:K12614 OMA:YSHARMK
NextBio:890944 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
Uniprot:Q95YF3
Length = 430
Score = 303 (111.7 bits), Expect = 4.8e-34, Sum P(2) = 4.8e-34
Identities = 97/335 (28%), Positives = 164/335 (48%)
Query: 23 FTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQK 79
F FC+ L I + GW +P+ IQE +I + L +D+L RA+ G+GKTGA+ IP+I+K
Sbjct: 45 FEDFCLGRDLLMGIFEKGWEKPSPIQEASIGVALTGQDILARAKNGTGKTGAYCIPVIEK 104
Query: 80 IINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL 139
I Q A ++ +A+V+ P++EL Q + EL+ +K + + D+
Sbjct: 105 I----QPA-LKAIQAMVIVPTRELALQTSQICVELSKHIQ--LKVMVTTGGTDLRDDIMR 157
Query: 140 LVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199
L +V+ATP R L L K + + +++DEAD + S ++ + ++ FLPK
Sbjct: 158 LNGTVHLVIATPGRIL-DLMEKGVAKMEHCKTLVLDEADKLLSQDFQGILDRLINFLPKE 216
Query: 200 YQAILASATLSEDVLSLKHLILRNPVILKL-EEPAIAPVSQLAHYHILAQEDEKATILYT 258
Q +L SAT V S + P + L EE + V+Q Y+ QE +K L T
Sbjct: 217 RQVMLYSATFPNTVTSFMQKHMHKPYEINLMEELTLLGVTQ---YYAFVQEKQKVHCLNT 273
Query: 259 LLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYD 318
L + L ++IIF N+ + L + + S ++S++ R + F QG
Sbjct: 274 LFR-KLQINQSIIFCNSTQRVELLAKKITEIGYSCYYIHSKMAQNHRNRVFHDFRQGNCR 332
Query: 319 VIIASD--EKALETPQINSTNNRKRKRDKESGVSR 351
++ SD + ++ +N N R+ E+ + R
Sbjct: 333 NLVCSDLLTRGIDIQAVNVVINFDFPRNAETYLHR 367
Score = 117 (46.2 bits), Expect = 4.8e-34, Sum P(2) = 4.8e-34
Identities = 21/50 (42%), Positives = 35/50 (70%)
Query: 349 VSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQ 398
++RGID Q V+ VINFDFP + + Y+HR GR+ R + G A++ ++ ++
Sbjct: 340 LTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRFGHLGVAINLITYEDR 389
>UNIPROTKB|Q95YF3 [details] [associations]
symbol:cgh-1 "ATP-dependent RNA helicase cgh-1"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008340
GO:GO:0009792 GO:GO:0002009 GO:GO:0006898 GO:GO:0040007
GO:GO:0006915 GO:GO:0010467 GO:GO:0016071 GO:GO:0043066
GO:GO:0030154 GO:GO:0007052 GO:GO:0002119 GO:GO:0017148
GO:GO:0048477 GO:GO:0007283 GO:GO:0051729 GO:GO:0003723
GO:GO:0040035 GO:GO:0000932 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0007276 GO:GO:0008026 EMBL:FO080423
RefSeq:NP_498646.1 ProteinModelPortal:Q95YF3 SMR:Q95YF3
DIP:DIP-25457N IntAct:Q95YF3 MINT:MINT-250782 STRING:Q95YF3
PaxDb:Q95YF3 EnsemblMetazoa:C07H6.5.1 EnsemblMetazoa:C07H6.5.2
GeneID:176061 KEGG:cel:CELE_C07H6.5 UCSC:C07H6.5.1 CTD:176061
WormBase:C07H6.5 eggNOG:COG0513 GeneTree:ENSGT00530000063986
HOGENOM:HOG000268797 InParanoid:Q95YF3 KO:K12614 OMA:YSHARMK
NextBio:890944 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
Uniprot:Q95YF3
Length = 430
Score = 303 (111.7 bits), Expect = 4.8e-34, Sum P(2) = 4.8e-34
Identities = 97/335 (28%), Positives = 164/335 (48%)
Query: 23 FTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQK 79
F FC+ L I + GW +P+ IQE +I + L +D+L RA+ G+GKTGA+ IP+I+K
Sbjct: 45 FEDFCLGRDLLMGIFEKGWEKPSPIQEASIGVALTGQDILARAKNGTGKTGAYCIPVIEK 104
Query: 80 IINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL 139
I Q A ++ +A+V+ P++EL Q + EL+ +K + + D+
Sbjct: 105 I----QPA-LKAIQAMVIVPTRELALQTSQICVELSKHIQ--LKVMVTTGGTDLRDDIMR 157
Query: 140 LVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199
L +V+ATP R L L K + + +++DEAD + S ++ + ++ FLPK
Sbjct: 158 LNGTVHLVIATPGRIL-DLMEKGVAKMEHCKTLVLDEADKLLSQDFQGILDRLINFLPKE 216
Query: 200 YQAILASATLSEDVLSLKHLILRNPVILKL-EEPAIAPVSQLAHYHILAQEDEKATILYT 258
Q +L SAT V S + P + L EE + V+Q Y+ QE +K L T
Sbjct: 217 RQVMLYSATFPNTVTSFMQKHMHKPYEINLMEELTLLGVTQ---YYAFVQEKQKVHCLNT 273
Query: 259 LLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYD 318
L + L ++IIF N+ + L + + S ++S++ R + F QG
Sbjct: 274 LFR-KLQINQSIIFCNSTQRVELLAKKITEIGYSCYYIHSKMAQNHRNRVFHDFRQGNCR 332
Query: 319 VIIASD--EKALETPQINSTNNRKRKRDKESGVSR 351
++ SD + ++ +N N R+ E+ + R
Sbjct: 333 NLVCSDLLTRGIDIQAVNVVINFDFPRNAETYLHR 367
Score = 117 (46.2 bits), Expect = 4.8e-34, Sum P(2) = 4.8e-34
Identities = 21/50 (42%), Positives = 35/50 (70%)
Query: 349 VSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQ 398
++RGID Q V+ VINFDFP + + Y+HR GR+ R + G A++ ++ ++
Sbjct: 340 LTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRFGHLGVAINLITYEDR 389
>UNIPROTKB|E7EQG2 [details] [associations]
symbol:EIF4A2 "Eukaryotic initiation factor 4A-II"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 EMBL:AC112907 HGNC:HGNC:3284 ChiTaRS:EIF4A2
IPI:IPI00924536 ProteinModelPortal:E7EQG2 SMR:E7EQG2 PRIDE:E7EQG2
Ensembl:ENST00000425053 ArrayExpress:E7EQG2 Bgee:E7EQG2
Uniprot:E7EQG2
Length = 362
Score = 314 (115.6 bits), Expect = 5.8e-34, Sum P(2) = 5.8e-34
Identities = 97/329 (29%), Positives = 171/329 (51%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ I G+ +P+ IQ+RAI ++ DV+ +A++G+GKT FAI ++Q++ +
Sbjct: 45 LRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQL-----EIEF 99
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVK-CVDISEQVDVSVQEPLLVERPDIVV 148
+ET+ALVL+P++EL Q+ K I L C+ V +Q+ L E P IVV
Sbjct: 100 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIG-GTNVRNEMQK-LQAEAPHIVV 157
Query: 149 ATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
TP R L + L K +++ ++DEAD + S G++D + + + L Q +L SAT
Sbjct: 158 GTPGRVFDMLNRRYLSPKW-IKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSAT 216
Query: 209 LSEDVLSLKHLILRNPV--ILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQ 266
+ DVL + +R+P+ ++K EE + + Q Y + +E+ K L L + L
Sbjct: 217 MPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQF--YINVEREEWKLDTLCDLYE-TLTI 273
Query: 267 GKTIIFVNTVDKCYKL--KLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
+ +IF+NT K L K++ F +S L+ ++ K R + +F G V+I +D
Sbjct: 274 TQAVIFLNTRRKVDWLTEKMHARDFTVSA--LHGDMDQKERDVIMREFRSGSSRVLITTD 331
Query: 325 --EKALETPQINSTNNRKRKRDKESGVSR 351
+ ++ Q++ N ++E+ + R
Sbjct: 332 LLARGIDVQQVSLVINYDLPTNRENYIHR 360
Score = 80 (33.2 bits), Expect = 5.8e-34, Sum P(2) = 5.8e-34
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 349 VSRGIDFQFVSNVINFDFPLDIQCYIHRA 377
++RGID Q VS VIN+D P + + YIHR+
Sbjct: 333 LARGIDVQQVSLVINYDLPTNRENYIHRS 361
>FB|FBgn0021995 [details] [associations]
symbol:Rs1 "Rs1" species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0042254
"ribosome biogenesis" evidence=NAS] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE013599 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0016779 HSSP:P10081 GeneTree:ENSGT00550000074997 KO:K13181
CTD:6247 EMBL:BT004908 RefSeq:NP_651970.1 UniGene:Dm.11481
SMR:Q7JQN4 STRING:Q7JQN4 EnsemblMetazoa:FBtr0088788 GeneID:44087
KEGG:dme:Dmel_CG2173 UCSC:CG2173-RA FlyBase:FBgn0021995
InParanoid:Q7JQN4 OMA:EHYIHRV OrthoDB:EOG42NGFQ GenomeRNAi:44087
NextBio:836725 Uniprot:Q7JQN4
Length = 782
Score = 328 (120.5 bits), Expect = 5.8e-34, Sum P(2) = 5.8e-34
Identities = 91/302 (30%), Positives = 157/302 (51%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
++AI LG++ PT IQ IP+ L +D+ A TG+GKT A+ +P +++++ +
Sbjct: 169 MRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTLERLL-YRPLNNK 227
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T+ LVL P++EL Q+++ ++L + DV I +DV QE +L + PDIV+A
Sbjct: 228 AITRVLVLVPTRELGAQVYQVTKQLCQFTTIDVGLA-IGG-LDVKAQEAVLRQNPDIVIA 285
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + H+K S+E++I+DEAD + + + MK ++ K Q +L SAT+
Sbjct: 286 TPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQTMLFSATM 345
Query: 210 SEDVLSLKHLILRNPV-ILKLEEPAIAPVSQLAHYHILAQED---EKATILYTLLKLNLV 265
SE V L + L P+ + +A L I +ED ++ IL +L+
Sbjct: 346 SEQVKDLAAVSLDKPIKVFVNNNQQVA--FNLRQEFIRIREDKEGDREPILASLI-CRTF 402
Query: 266 QGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE 325
++FV T + ++L + L + L+ L + R ++ +F + DV+IA+D
Sbjct: 403 HDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVLIATDV 462
Query: 326 KA 327
A
Sbjct: 463 AA 464
Score = 112 (44.5 bits), Expect = 5.8e-34, Sum P(2) = 5.8e-34
Identities = 22/54 (40%), Positives = 32/54 (59%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND 403
+RG+D V VINF P+ + YIHR GRTAR G ++S +E+ ++ D
Sbjct: 464 ARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKD 517
>WB|WBGene00015232 [details] [associations]
symbol:B0511.6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0043652 "engulfment of apoptotic cell"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008340
GO:GO:0040007 GO:GO:0002119 GO:GO:0003723 GO:GO:0043652
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY GeneTree:ENSGT00680000100037 HSSP:P10081 EMBL:FO080219
PIR:T33113 RefSeq:NP_492779.1 ProteinModelPortal:O61815 SMR:O61815
DIP:DIP-27278N MINT:MINT-1068292 STRING:O61815 PaxDb:O61815
EnsemblMetazoa:B0511.6.1 EnsemblMetazoa:B0511.6.2 GeneID:172954
KEGG:cel:CELE_B0511.6 UCSC:B0511.6.1 CTD:172954 WormBase:B0511.6
InParanoid:O61815 NextBio:877669 Uniprot:O61815
Length = 544
Score = 333 (122.3 bits), Expect = 1.4e-33, Sum P(2) = 1.4e-33
Identities = 101/312 (32%), Positives = 164/312 (52%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+ LG+ T IQ ++I +L+ KDVL A+TGSGKT AF +P I+ + L Q
Sbjct: 80 LKAVQGLGFTTMTEIQAKSIDPLLEGKDVLASAKTGSGKTLAFLLPAIELLHKLNWK-QH 138
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T +++SP++EL Q + + EL + V + S ++ L + I+VA
Sbjct: 139 NGTGVIIVSPTRELSMQTYGVLSELLEGSNLTYGLVMGGS--NRSAEKDKLAKGVSILVA 196
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HL+ L +++ +IIDEAD + G+E +M+ VL+ LPK Q++L SAT
Sbjct: 197 TPGRLLDHLQNTDNFLVRNMKCLIIDEADRILDIGFEIEMQQVLRHLPKQRQSMLFSATH 256
Query: 210 SEDVLSLKHLILR-NPVILKLEEPAI-APVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
S V L L L NPV + + E A A V L +I+A D++ +L+T LK N +
Sbjct: 257 SPKVDELVKLALHSNPVRVSVHEKAEEATVEGLQQGYIVAPSDKRLLLLFTFLKKNKTK- 315
Query: 268 KTIIFVNTVDKCYKLKLY---LEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
K ++F ++ C +K + L I ++ + + R +QF Q +++ +D
Sbjct: 316 KVMVFFSS---CNSVKFHHELLNYIDIPCMSIHGKQKQQKRTTTFFQFCQAETGILLCTD 372
Query: 325 EKA--LETPQIN 334
A L+ P ++
Sbjct: 373 VAARGLDIPAVD 384
Score = 92 (37.4 bits), Expect = 1.4e-33, Sum P(2) = 1.4e-33
Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 350 SRGIDFQFVSNVINFDFPLDI-QCYIHRAGRTARGKNQGTALSFVSLREQDL 400
+RG+D V ++ +D P D + YIHR GRTARG N G+ + + LR ++L
Sbjct: 375 ARGLDIPAVDWIVQYD-PTDEPREYIHRVGRTARGTN-GSGKALLVLRPEEL 424
>DICTYBASE|DDB_G0282741 [details] [associations]
symbol:ddx18 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0282741 GO:GO:0005524
GO:GO:0005730 EMBL:AAFI02000047 GenomeReviews:CM000152_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 InterPro:IPR025313 Pfam:PF13959
RefSeq:XP_640236.1 ProteinModelPortal:Q54S03 STRING:Q54S03
EnsemblProtists:DDB0234194 GeneID:8623775 KEGG:ddi:DDB_G0282741
KO:K13179 OMA:KDGYRSY Uniprot:Q54S03
Length = 602
Score = 330 (121.2 bits), Expect = 2.6e-33, Sum P(2) = 2.6e-33
Identities = 94/309 (30%), Positives = 166/309 (53%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ 90
++I ++G+ + T IQ ++I +L+ KD+L ARTGSGKT AF IP I+ ++ +
Sbjct: 132 KSIEEMGFKKMTPIQAKSILPLLEGKDLLGAARTGSGKTLAFLIPAIEVLVKSNFKPR-N 190
Query: 91 ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVAT 150
T +++SP++EL Q++ +EL MK + I +E L + +++VAT
Sbjct: 191 GTGVIIISPTRELALQIYGVAREL-MKYHTQTHGIVIGG-ASKKPEEERLEKGVNLLVAT 248
Query: 151 PARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLS 210
P R L HL+ + +L+ +IIDEAD + G+E++M ++K +PK Q +L SAT +
Sbjct: 249 PGRLLDHLQNTKGFITKNLKCLIIDEADRILEVGFEEEMHQIIKKVPKTRQTMLFSATQT 308
Query: 211 EDVLSLKHLILRN-PVILKLE-EPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGK 268
V + + L N PV + ++ E I+ V L +++ + + +LYT LK NL + K
Sbjct: 309 RKVDDIAKVSLNNSPVYVGVDDEREISTVEGLEQGYVVCPSERRFLLLYTFLKKNLSK-K 367
Query: 269 TIIFVNTVDKC-YKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
I+F+++ + Y +L L I L+ + R + Y+F ++I +D A
Sbjct: 368 IIVFLSSCNAVKYTAEL-LNYIDIPVLELHGRQKQQKRTNTFYEFVNAEKGILICTDVAA 426
Query: 328 --LETPQIN 334
L+ P ++
Sbjct: 427 RGLDIPSVD 435
Score = 97 (39.2 bits), Expect = 2.6e-33, Sum P(2) = 2.6e-33
Identities = 23/49 (46%), Positives = 31/49 (63%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQ-GTALSFVSLRE 397
+RG+D V +I +D P D + YIHR GRTARG + G AL F+ +E
Sbjct: 426 ARGLDIPSVDWIIQYDPPDDPKEYIHRVGRTARGVGKKGRALLFLLPKE 474
>UNIPROTKB|J9NU36 [details] [associations]
symbol:EIF4A1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GeneTree:ENSGT00530000062880 EMBL:AAEX03006506
EMBL:AAEX03006505 Ensembl:ENSCAFT00000049437 Uniprot:J9NU36
Length = 423
Score = 298 (110.0 bits), Expect = 2.9e-33, Sum P(2) = 2.9e-33
Identities = 96/324 (29%), Positives = 170/324 (52%)
Query: 37 GWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKI-INLKQTAQVQETKAL 95
G + PT ++RAI ++ DV+ +A++G+GKT FAI ++Q+I ++LK T +AL
Sbjct: 70 GPIPPT--RQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKAT------QAL 121
Query: 96 VLSPSKELCNQLHKNIQELT--MKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPAR 153
VL+P++EL Q+ K + L M S C+ V VQ+ L +E P I+V TP R
Sbjct: 122 VLAPTRELAQQIQKVVMALGDYMGASCHA-CIG-GTNVRAEVQK-LQMEAPHIIVGTPGR 178
Query: 154 ALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSEDV 213
L + L K +++ ++DEAD + S G++D + + + L Q +L SAT+ DV
Sbjct: 179 VFDMLNRRYLSPKY-IKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDV 237
Query: 214 LSLKHLILRNPV--ILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTII 271
L + +R+P+ ++K EE + + Q Y + +E+ K L L + L + +I
Sbjct: 238 LEVTKKFMRDPIRILVKKEELTLEGIRQF--YINVEREEWKLDTLCDLYE-TLTITQAVI 294
Query: 272 FVNTVDKCYKL--KLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD--EKA 327
F+NT K L K++ F +S ++ ++ K R + +F G V+I +D +
Sbjct: 295 FINTRRKVDWLTEKMHARDFTVSA--MHGDMDQKERDVIMREFRSGSSRVLITTDLLARG 352
Query: 328 LETPQINSTNNRKRKRDKESGVSR 351
++ Q++ N ++E+ + R
Sbjct: 353 IDVQQVSLVINYDLPTNRENYIHR 376
Score = 115 (45.5 bits), Expect = 2.9e-33, Sum P(2) = 2.9e-33
Identities = 26/69 (37%), Positives = 39/69 (56%)
Query: 349 VSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALS 408
++RGID Q VS VIN+D P + + YIHR GR R +G A++ V+ ++ + D
Sbjct: 349 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFY 408
Query: 409 FVSLREQDL 417
S+ E L
Sbjct: 409 NTSIEEMPL 417
>UNIPROTKB|E2R316 [details] [associations]
symbol:DDX55 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 Ensembl:ENSCAFT00000035837 Uniprot:E2R316
Length = 483
Score = 362 (132.5 bits), Expect = 3.6e-33, P = 3.6e-33
Identities = 118/408 (28%), Positives = 204/408 (50%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L A+ +LG+ T +Q IPL ++NKDV A TGSGKT AF IP+++ ++ ++ +
Sbjct: 21 LGALGQLGFPHMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPILEILLRREEKLKK 80
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ A++++P++EL Q+ + + T + + + I + + +I+VA
Sbjct: 81 NQVGAIIITPTRELAIQVDEVLAHFTKSFPQFSQILWIGGRNPADDVSRFKEQGGNIIVA 140
Query: 150 TPARA--LAHLKAKTLDLKS---SLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAIL 204
TP R + K + LDL S SLE++++DEAD + G+E + +L+FLPK + L
Sbjct: 141 TPGRLEDMFRRKVEGLDLASCVKSLEVLVLDEADRLLDMGFEASINTILEFLPKQRRTGL 200
Query: 205 ASATLSEDVLSLKHLILRNPVILKLEEPAIAPVS------QLAHYHILAQEDEKATILYT 258
SAT +++V SL LRNPV + ++E +A S +L +Y+++ + DEK L
Sbjct: 201 FSATQTQEVESLVRAGLRNPVRISVKEKGVAASSTQKTPSRLENYYMVCKADEKFNQLVH 260
Query: 259 LLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARC-HAVYQFNQGLY 317
L+ N Q K +IF +T C ++ Y K ++ S K C H + +
Sbjct: 261 FLR-NHKQEKHLIFFST---CACVEYY---GKALEALVKS---VKIMCIHGKMKHKRNK- 309
Query: 318 DVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRA 377
I + + L++ + T+ ++RGID V+ V+ +D P ++HR
Sbjct: 310 ---IFMEFRKLQSGILVCTDV----------MARGIDIPEVNWVLQYDPPSSASAFVHRC 356
Query: 378 GRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYL 425
GRTAR + G+AL F+ E+ + L+E L + + L
Sbjct: 357 GRTARIGHGGSALVFLLPMEESYVTFLEINQKCPLQEMKLQKNTGDLL 404
>UNIPROTKB|D4A824 [details] [associations]
symbol:Ddx18 "Protein Ddx18" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1549712 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
EMBL:AC128353 IPI:IPI00393022 Ensembl:ENSRNOT00000028172
ArrayExpress:D4A824 Uniprot:D4A824
Length = 662
Score = 330 (121.2 bits), Expect = 4.0e-33, Sum P(2) = 4.0e-33
Identities = 88/309 (28%), Positives = 162/309 (52%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AI ++G+ T IQ ++I +L+ +D+L A+TGSGKT AF IP+I+ I+ LK +
Sbjct: 183 LKAIEEMGFKHMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPVIELIVKLKFMPR- 241
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T L+LSP++EL Q ++EL + VQ+ L+ +IVVA
Sbjct: 242 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEVQK--LLNGINIVVA 299
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H++ + +L+ ++IDEAD + G+E+++K ++K LP Q +L SAT
Sbjct: 300 TPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPARRQTMLFSATQ 359
Query: 210 SEDVLSLKHLILRN-PVILKLEEPA-IAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
+ V L + L+ P+ + +++ +A V L +++ +++ +L+T LK N +
Sbjct: 360 TRKVEDLARISLKKEPLYVGVDDDKEVATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKK 419
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
+ F + + Y +L L + ++ + R +QF +++ +D A
Sbjct: 420 VMVFFSSCMSVKYHYEL-LNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSGILLCTDVAA 478
Query: 328 --LETPQIN 334
L+ P+++
Sbjct: 479 RGLDIPEVD 487
Score = 98 (39.6 bits), Expect = 4.0e-33, Sum P(2) = 4.0e-33
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDL 400
+RG+D V ++ +D P D + YIHR GRTARG N G + + LR ++L
Sbjct: 478 ARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLN-GRGHALLILRPEEL 527
>RGD|1549712 [details] [associations]
symbol:Ddx18 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 18"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1549712 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
GeneTree:ENSGT00680000100037 CTD:8886 HOVERGEN:HBG105702
OrthoDB:EOG4894MF EMBL:AC128353 EMBL:BC083919 IPI:IPI00367078
RefSeq:NP_001006997.1 UniGene:Rn.26598 STRING:Q5XHY0
Ensembl:ENSRNOT00000037203 GeneID:308490 KEGG:rno:308490
UCSC:RGD:1549712 InParanoid:Q5XHY0 NextBio:658990
Genevestigator:Q5XHY0 Uniprot:Q5XHY0
Length = 674
Score = 330 (121.2 bits), Expect = 4.4e-33, Sum P(2) = 4.4e-33
Identities = 88/309 (28%), Positives = 162/309 (52%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AI ++G+ T IQ ++I +L+ +D+L A+TGSGKT AF IP+I+ I+ LK +
Sbjct: 195 LKAIEEMGFKHMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPVIELIVKLKFMPR- 253
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T L+LSP++EL Q ++EL + VQ+ L+ +IVVA
Sbjct: 254 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEVQK--LLNGINIVVA 311
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H++ + +L+ ++IDEAD + G+E+++K ++K LP Q +L SAT
Sbjct: 312 TPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPARRQTMLFSATQ 371
Query: 210 SEDVLSLKHLILRN-PVILKLEEPA-IAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
+ V L + L+ P+ + +++ +A V L +++ +++ +L+T LK N +
Sbjct: 372 TRKVEDLARISLKKEPLYVGVDDDKEVATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKK 431
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
+ F + + Y +L L + ++ + R +QF +++ +D A
Sbjct: 432 VMVFFSSCMSVKYHYEL-LNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSGILLCTDVAA 490
Query: 328 --LETPQIN 334
L+ P+++
Sbjct: 491 RGLDIPEVD 499
Score = 98 (39.6 bits), Expect = 4.4e-33, Sum P(2) = 4.4e-33
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDL 400
+RG+D V ++ +D P D + YIHR GRTARG N G + + LR ++L
Sbjct: 490 ARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLN-GRGHALLILRPEEL 539
>MGI|MGI:1914192 [details] [associations]
symbol:Ddx18 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 18"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1914192
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
GeneTree:ENSGT00680000100037 CTD:8886 HOVERGEN:HBG105702
OrthoDB:EOG4894MF EMBL:AK075864 EMBL:AK019845 EMBL:BC028246
EMBL:BC103776 IPI:IPI00459381 RefSeq:NP_080136.2 UniGene:Mm.44219
ProteinModelPortal:Q8K363 SMR:Q8K363 STRING:Q8K363
PhosphoSite:Q8K363 PaxDb:Q8K363 PRIDE:Q8K363
Ensembl:ENSMUST00000001724 GeneID:66942 KEGG:mmu:66942
InParanoid:Q8K363 NextBio:323084 Bgee:Q8K363 CleanEx:MM_DDX18
Genevestigator:Q8K363 GermOnline:ENSMUSG00000001674 Uniprot:Q8K363
Length = 660
Score = 329 (120.9 bits), Expect = 5.3e-33, Sum P(2) = 5.3e-33
Identities = 87/309 (28%), Positives = 162/309 (52%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AI ++G+ T IQ ++I +L+ +D+L A+TGSGKT AF IP+I+ I+ LK +
Sbjct: 181 LKAIEEMGFKRMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPVIELIVKLKFMPR- 239
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T L+LSP++EL Q ++EL + VQ+ L+ +I+VA
Sbjct: 240 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEVQK--LLNGINIIVA 297
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H++ + +L+ ++IDEAD + G+E+++K ++K LP Q +L SAT
Sbjct: 298 TPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPARRQTMLFSATQ 357
Query: 210 SEDVLSLKHLILRN-PVILKLEEPA-IAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
+ V L + L+ P+ + +++ +A V L +++ +++ +L+T LK N +
Sbjct: 358 TRKVEDLARISLKKEPLYVGVDDDKEVATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKK 417
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
+ F + + Y +L L + ++ + R +QF +++ +D A
Sbjct: 418 VMVFFSSCMSVKYHYEL-LNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSGILLCTDVAA 476
Query: 328 --LETPQIN 334
L+ P+++
Sbjct: 477 RGLDIPEVD 485
Score = 98 (39.6 bits), Expect = 5.3e-33, Sum P(2) = 5.3e-33
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDL 400
+RG+D V ++ +D P D + YIHR GRTARG N G + + LR ++L
Sbjct: 476 ARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLN-GRGHALLILRPEEL 525
>UNIPROTKB|E9PIF2 [details] [associations]
symbol:DDX10 "Probable ATP-dependent RNA helicase DDX10"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 HGNC:HGNC:2735 ChiTaRS:DDX10 EMBL:AP002453
EMBL:AP003027 EMBL:AP003387 IPI:IPI00982941
ProteinModelPortal:E9PIF2 SMR:E9PIF2 Ensembl:ENST00000526794
UCSC:uc001pkl.1 ArrayExpress:E9PIF2 Bgee:E9PIF2 Uniprot:E9PIF2
Length = 835
Score = 310 (114.2 bits), Expect = 6.1e-33, Sum P(2) = 6.1e-33
Identities = 87/298 (29%), Positives = 158/298 (53%)
Query: 42 TLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSK 101
T IQ++ I L LQ KDVL A+TGSGKT AF +P+++ + L+ T+ L++SP++
Sbjct: 93 TEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTS-TDGLGVLIISPTR 151
Query: 102 ELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAK 161
EL Q + ++++ + D I D+ E + +I+V TP R L H+
Sbjct: 152 ELAYQTFEVLRKVGK--NHDFSAGLIIGGKDLK-HEAERINNINILVCTPGRLLQHMDET 208
Query: 162 TLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLIL 221
+ L+++++DEAD + G+ D M AV++ LPK Q +L SAT ++ V L L L
Sbjct: 209 VSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSL 268
Query: 222 RNPVILKLEEPA-IAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKC- 279
+NP + + E A + + L +I+ + +K ++LY+ L+ +L + K+I+F ++ +
Sbjct: 269 KNPEYVWVHEKAKYSTPATLEQNYIVCELQQKISVLYSFLRSHLKK-KSIVFFSSCKEVQ 327
Query: 280 YKLKLYLE-QFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD--EKALETPQIN 334
Y +++ + +S L+ R +F + V+ A+D + L+ P +N
Sbjct: 328 YLYRVFCRLRPGVSILALHGRQQQMRRMEVYNEFVRKRAAVLFATDIAARGLDFPAVN 385
Score = 124 (48.7 bits), Expect = 6.1e-33, Sum P(2) = 6.1e-33
Identities = 33/87 (37%), Positives = 47/87 (54%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLRE----QDLMNDGT 405
+RG+DF V+ V+ FD P D YIHRAGRTAR K G AL + E Q L+
Sbjct: 376 ARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEKAMVQQLLQKKV 435
Query: 406 ALSFVSLREQDLMNDVNEYLMTNLHED 432
+ + + + L+ DV + L + L +D
Sbjct: 436 PVKEIKINPEKLI-DVQKKLESILAQD 461
>UNIPROTKB|E2RC35 [details] [associations]
symbol:DDX10 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
InterPro:IPR025313 Pfam:PF13959 GeneTree:ENSGT00550000074980
CTD:1662 OMA:ADKVIEP EMBL:AAEX03003508 RefSeq:XP_536583.2
Ensembl:ENSCAFT00000022758 GeneID:479448 KEGG:cfa:479448
Uniprot:E2RC35
Length = 871
Score = 312 (114.9 bits), Expect = 6.9e-33, Sum P(2) = 6.9e-33
Identities = 87/298 (29%), Positives = 159/298 (53%)
Query: 42 TLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSK 101
T IQ++ I L LQ KDVL A+TGSGKT AF +P+++ + L+ T+ L++SP++
Sbjct: 93 TEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTS-TDGLGVLIISPTR 151
Query: 102 ELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAK 161
EL Q + ++++ + D I D+ E + +I+V TP R L H+
Sbjct: 152 ELAYQTFEVLRKVGK--NHDFSAGLIIGGKDLK-HEAERINNINILVCTPGRLLQHMDET 208
Query: 162 TLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLIL 221
++L+++++DEAD + G+ D M A+++ LPK Q +L SAT ++ V L L L
Sbjct: 209 ICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPKKRQTLLFSATQTKSVKDLARLSL 268
Query: 222 RNPVILKLEEPA-IAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKC- 279
+NP + + E A + + L +I+ + +K ++LY+ L+ +L + K+I+F ++ +
Sbjct: 269 KNPEYIWVHEKAKYSTPATLEQNYIVCELQQKISVLYSFLRSHLKK-KSIVFFSSCKEVQ 327
Query: 280 YKLKLYLE-QFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD--EKALETPQIN 334
Y +++ + IS L+ R +F + V+ A+D + L+ P +N
Sbjct: 328 YLYRVFCRLRPGISILALHGRQQQMRRMEVYNEFVRKRSAVLFATDIAARGLDFPAVN 385
Score = 122 (48.0 bits), Expect = 6.9e-33, Sum P(2) = 6.9e-33
Identities = 33/88 (37%), Positives = 47/88 (53%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLRE-----QDLMNDG 404
+RG+DF V+ V+ FD P D YIHRAGRTAR K G AL + E Q L+
Sbjct: 376 ARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEEKGMVQQLLQKK 435
Query: 405 TALSFVSLREQDLMNDVNEYLMTNLHED 432
+ + + + L+ DV + L + L +D
Sbjct: 436 VPVKEIKINPEKLI-DVQKKLESFLAQD 462
>UNIPROTKB|Q13206 [details] [associations]
symbol:DDX10 "Probable ATP-dependent RNA helicase DDX10"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=TAS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CH471065
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268801 CTD:1662 HOVERGEN:HBG102756 OrthoDB:EOG4BK536
EMBL:U28042 EMBL:AB040537 EMBL:AK315216 EMBL:BC091521 EMBL:BC093654
EMBL:BC093656 IPI:IPI00297900 RefSeq:NP_004389.2 UniGene:Hs.591931
PDB:2PL3 PDBsum:2PL3 ProteinModelPortal:Q13206 SMR:Q13206
IntAct:Q13206 STRING:Q13206 PhosphoSite:Q13206 DMDM:76803554
SWISS-2DPAGE:Q13206 PaxDb:Q13206 PeptideAtlas:Q13206 PRIDE:Q13206
Ensembl:ENST00000322536 GeneID:1662 KEGG:hsa:1662 UCSC:uc001pkm.3
GeneCards:GC11P108569 HGNC:HGNC:2735 HPA:HPA004691 MIM:601235
neXtProt:NX_Q13206 PharmGKB:PA27200 InParanoid:Q13206 OMA:ADKVIEP
ChiTaRS:DDX10 EvolutionaryTrace:Q13206 GenomeRNAi:1662 NextBio:6838
ArrayExpress:Q13206 Bgee:Q13206 CleanEx:HS_DDX10
Genevestigator:Q13206 GermOnline:ENSG00000178105 Uniprot:Q13206
Length = 875
Score = 310 (114.2 bits), Expect = 7.4e-33, Sum P(2) = 7.4e-33
Identities = 87/298 (29%), Positives = 158/298 (53%)
Query: 42 TLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSK 101
T IQ++ I L LQ KDVL A+TGSGKT AF +P+++ + L+ T+ L++SP++
Sbjct: 93 TEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTS-TDGLGVLIISPTR 151
Query: 102 ELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAK 161
EL Q + ++++ + D I D+ E + +I+V TP R L H+
Sbjct: 152 ELAYQTFEVLRKVGK--NHDFSAGLIIGGKDLK-HEAERINNINILVCTPGRLLQHMDET 208
Query: 162 TLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLIL 221
+ L+++++DEAD + G+ D M AV++ LPK Q +L SAT ++ V L L L
Sbjct: 209 VSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSL 268
Query: 222 RNPVILKLEEPA-IAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKC- 279
+NP + + E A + + L +I+ + +K ++LY+ L+ +L + K+I+F ++ +
Sbjct: 269 KNPEYVWVHEKAKYSTPATLEQNYIVCELQQKISVLYSFLRSHLKK-KSIVFFSSCKEVQ 327
Query: 280 YKLKLYLE-QFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD--EKALETPQIN 334
Y +++ + +S L+ R +F + V+ A+D + L+ P +N
Sbjct: 328 YLYRVFCRLRPGVSILALHGRQQQMRRMEVYNEFVRKRAAVLFATDIAARGLDFPAVN 385
Score = 124 (48.7 bits), Expect = 7.4e-33, Sum P(2) = 7.4e-33
Identities = 33/87 (37%), Positives = 47/87 (54%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLRE----QDLMNDGT 405
+RG+DF V+ V+ FD P D YIHRAGRTAR K G AL + E Q L+
Sbjct: 376 ARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEKAMVQQLLQKKV 435
Query: 406 ALSFVSLREQDLMNDVNEYLMTNLHED 432
+ + + + L+ DV + L + L +D
Sbjct: 436 PVKEIKINPEKLI-DVQKKLESILAQD 461
>UNIPROTKB|Q5ZLN8 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P26196 CTD:57696
HOGENOM:HOG000268803 HOVERGEN:HBG107796 KO:K14809 OrthoDB:EOG4WH8KN
EMBL:AJ719696 IPI:IPI00590534 RefSeq:NP_001006185.1
UniGene:Gga.42731 ProteinModelPortal:Q5ZLN8 STRING:Q5ZLN8
PRIDE:Q5ZLN8 GeneID:416820 KEGG:gga:416820 InParanoid:Q5ZLN8
NextBio:20820225 Uniprot:Q5ZLN8
Length = 591
Score = 374 (136.7 bits), Expect = 9.1e-33, P = 9.1e-33
Identities = 117/388 (30%), Positives = 199/388 (51%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A+ LG+ T +Q IPL + NKDV A TGSGKT AF IP+++ ++ ++ +
Sbjct: 21 LRALQDLGFDRMTPVQSATIPLFMSNKDVAAEAVTGSGKTLAFVIPILEILLRREEKLKK 80
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ A++++P++EL Q+ + + T + + + I + + E +I+VA
Sbjct: 81 MQVGAIIITPTRELAIQIDEVLTHFTKHFPKFSQILLIGGRNPMEDVEKFKEHGGNIIVA 140
Query: 150 TPARA--LAHLKAKTLDLKS---SLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAIL 204
TP R L KA LDL S SL+++++DEAD + G+E + A+L FLPK + L
Sbjct: 141 TPGRLEDLFRRKADGLDLASCVKSLDVLVLDEADRLLDMGFESSLNAILAFLPKQRRTGL 200
Query: 205 ASATLSEDVLSLKHLILRNPVILKLEEPAIAPVS------QLAHYHILAQEDEKATILYT 258
SAT +++V +L LRNPV + ++E +A + +L +Y+++ + DEK L
Sbjct: 201 FSATQTQEVENLVRAGLRNPVRISVKEKGVAATNTQKTPTRLENYYMICKADEKFNQLVH 260
Query: 259 LLKLNLVQGKTIIFVNT---VDKCYK-LKLYLEQFKISTCVLNSELPAKARCHAVYQFNQ 314
L+ + Q K ++F +T V+ K L+ ++Q KI C+ + ++ K R +F +
Sbjct: 261 FLRQHK-QEKHLVFFSTCACVEYYGKALESLIKQVKIM-CI-HGKMKHK-RNKIFTEFRR 316
Query: 315 GLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYI 374
+++ +D A RGID V V+ +D P ++
Sbjct: 317 LAGGILVCTDVMA-----------------------RGIDIPEVHWVLQYDPPSSASAFV 353
Query: 375 HRAGRTARGKNQGTALSFVSLREQDLMN 402
HR GRTAR N G+AL F+ E+ +N
Sbjct: 354 HRCGRTARIGNAGSALVFLLPMEESYIN 381
>SGD|S000002319 [details] [associations]
symbol:DHH1 "Cytoplasmic DExD/H-box helicase, stimulates mRNA
decapping" species:4932 "Saccharomyces cerevisiae" [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA;IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IMP] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000290
"deadenylation-dependent decapping of nuclear-transcribed mRNA"
evidence=IMP] [GO:0003724 "RNA helicase activity" evidence=IGI;ISS]
[GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=IGI;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000002319 GO:GO:0005524
GO:GO:0006417 GO:GO:0006397 EMBL:BK006938 GO:GO:0003723
GO:GO:0000753 GO:GO:0000932 EMBL:Z67750 GO:GO:0051028
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0010494
GO:GO:0033962 GO:GO:0034063 GO:GO:0008026 eggNOG:COG0513
GeneTree:ENSGT00530000063986 HOGENOM:HOG000268797 KO:K12614
OMA:YSHARMK GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0000290 OrthoDB:EOG4QJVWF EMBL:X66057 EMBL:Z74208 PIR:S31229
RefSeq:NP_010121.1 PDB:1S2M PDBsum:1S2M ProteinModelPortal:P39517
SMR:P39517 DIP:DIP-1243N IntAct:P39517 MINT:MINT-385061
STRING:P39517 PaxDb:P39517 PeptideAtlas:P39517 EnsemblFungi:YDL160C
GeneID:851394 KEGG:sce:YDL160C CYGD:YDL160c
EvolutionaryTrace:P39517 NextBio:968552 Genevestigator:P39517
GermOnline:YDL160C Uniprot:P39517
Length = 506
Score = 307 (113.1 bits), Expect = 9.3e-33, Sum P(2) = 9.3e-33
Identities = 91/315 (28%), Positives = 158/315 (50%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L I + G+ +P+ IQE AIP+ + +D+L RA+ G+GKT AF IP ++K+ ++
Sbjct: 58 LMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKV-----KPKL 112
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ +AL++ P++EL Q + ++ L C + C+ + ++ L E I+V
Sbjct: 113 NKIQALIMVPTRELALQTSQVVRTLGKHCG--ISCMVTTGGTNLRDDILRLNETVHILVG 170
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT- 208
TP R L K DL S + I+DEAD + S ++ ++ +L FLP +Q++L SAT
Sbjct: 171 TPGRVLDLASRKVADL-SDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATF 229
Query: 209 -LSEDVLSLKHLILRNPVILKL-EEPAIAPVSQLAHYHILAQEDEKATILYTLL-KLNLV 265
L+ +KHL P + L EE + ++Q Y+ +E +K L TL KL +
Sbjct: 230 PLTVKEFMVKHL--HKPYEINLMEELTLKGITQ---YYAFVEERQKLHCLNTLFSKLQIN 284
Query: 266 QGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD- 324
Q IIF N+ ++ L + S ++ + + R ++F QG ++ SD
Sbjct: 285 QA--IIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDL 342
Query: 325 -EKALETPQINSTNN 338
+ ++ +N N
Sbjct: 343 LTRGIDIQAVNVVIN 357
Score = 113 (44.8 bits), Expect = 9.3e-33, Sum P(2) = 9.3e-33
Identities = 21/50 (42%), Positives = 34/50 (68%)
Query: 349 VSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQ 398
++RGID Q V+ VINFDFP + Y+HR GR+ R + G A++ ++ ++
Sbjct: 343 LTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDR 392
>UNIPROTKB|F1RZ83 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9823 "Sus scrofa" [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0045727 "positive regulation of
translation" evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 OMA:EDWKFDT
EMBL:CU655945 Ensembl:ENSSSCT00000018679 ArrayExpress:F1RZ83
Uniprot:F1RZ83
Length = 411
Score = 296 (109.3 bits), Expect = 9.9e-33, Sum P(2) = 9.9e-33
Identities = 82/326 (25%), Positives = 170/326 (52%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ I G EP Q+R I +++++ + +V +++G+GKT F+I ++Q + QV
Sbjct: 50 LRGIYAYGRPEPGAFQQRKILVVMKSNNAVVISQSGTGKTATFSISVLQCL-----DIQV 104
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ET+AL+L+P++EL Q+ K + L + +V+C +V L +V
Sbjct: 105 RETQALILAPTRELAVQIQKGL--LALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAG 162
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R ++ ++L ++ ++++++DEAD + + G+++ + V ++LP Q +L SATL
Sbjct: 163 TPGRVFDMIRRRSLRTRA-IKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATL 221
Query: 210 SEDVLSLKHLILRNPV--ILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
++L + + + +P+ ++K +E + + Q + + +E+ K L L L
Sbjct: 222 PHEILEMTNKFMTDPIRILVKRDELTLEGIKQF--FVAVEREEWKFDTLCDLYD-TLTIT 278
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD--E 325
+ +IF NT K L + + + ++ ++P K R + +F G V+I++D
Sbjct: 279 QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWA 338
Query: 326 KALETPQINSTNNRKRKRDKESGVSR 351
+ L+ PQ++ N ++E + R
Sbjct: 339 RGLDVPQVSLIINYDLPNNRELYIHR 364
Score = 106 (42.4 bits), Expect = 9.9e-33, Sum P(2) = 9.9e-33
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND 403
+RG+D VS +IN+D P + + YIHR GR+ R +G A++FV + ++ D
Sbjct: 338 ARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRD 391
Score = 46 (21.3 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 404 GTALSFVSLREQDLMNDVNEYLMTNLHE 431
G A++FV + ++ D+ +Y T + E
Sbjct: 375 GVAINFVKNDDIRILRDIEQYYSTQIDE 402
>UNIPROTKB|Q9KS53 [details] [associations]
symbol:VC1407 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 341 (125.1 bits), Expect = 1.1e-32, Sum P(2) = 1.1e-32
Identities = 91/312 (29%), Positives = 164/312 (52%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
+Q +A+LG+ +PT IQ +AIP+ILQ +D++ A+TG+GKT +F +P+++K+ QT +
Sbjct: 13 VQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEKL-RQGQTQRK 71
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ +AL+L P++EL Q+ + +++ +K + + VD Q+ L++ D++VA
Sbjct: 72 KRVRALILVPTRELAMQVAEKVEQYGKDTG--LKSLAVFGGVDEQAQKQRLIDGVDVLVA 129
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L L + +E+V++DEAD + G+ + + ++ LP Q +L SATL
Sbjct: 130 TPGR-LMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQFLLFSATL 188
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQ-GK 268
S V L +R+P + + A S ++ + I +D K+ +L L+ N Q +
Sbjct: 189 SRKVRELAKTAVRDPHEISIAANQ-ASKSNISQWLITVDKDTKSALLSHLI--NEQQWDQ 245
Query: 269 TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA- 327
+IF+ T KL LE+ I +S R + F G ++A+ A
Sbjct: 246 ALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVATGVAAR 305
Query: 328 -LETPQINSTNN 338
++ Q++ N
Sbjct: 306 GIDIDQLSRVVN 317
Score = 37 (18.1 bits), Expect = 1.1e-32, Sum P(2) = 1.1e-32
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 2 IAKLGWLEPTLIQ 14
+A+LG+ +PT IQ
Sbjct: 16 VAQLGYQKPTHIQ 28
>TIGR_CMR|VC_1407 [details] [associations]
symbol:VC_1407 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 341 (125.1 bits), Expect = 1.1e-32, Sum P(2) = 1.1e-32
Identities = 91/312 (29%), Positives = 164/312 (52%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
+Q +A+LG+ +PT IQ +AIP+ILQ +D++ A+TG+GKT +F +P+++K+ QT +
Sbjct: 13 VQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEKL-RQGQTQRK 71
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ +AL+L P++EL Q+ + +++ +K + + VD Q+ L++ D++VA
Sbjct: 72 KRVRALILVPTRELAMQVAEKVEQYGKDTG--LKSLAVFGGVDEQAQKQRLIDGVDVLVA 129
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L L + +E+V++DEAD + G+ + + ++ LP Q +L SATL
Sbjct: 130 TPGR-LMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQFLLFSATL 188
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQ-GK 268
S V L +R+P + + A S ++ + I +D K+ +L L+ N Q +
Sbjct: 189 SRKVRELAKTAVRDPHEISIAANQ-ASKSNISQWLITVDKDTKSALLSHLI--NEQQWDQ 245
Query: 269 TIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA- 327
+IF+ T KL LE+ I +S R + F G ++A+ A
Sbjct: 246 ALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVATGVAAR 305
Query: 328 -LETPQINSTNN 338
++ Q++ N
Sbjct: 306 GIDIDQLSRVVN 317
Score = 37 (18.1 bits), Expect = 1.1e-32, Sum P(2) = 1.1e-32
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 2 IAKLGWLEPTLIQ 14
+A+LG+ +PT IQ
Sbjct: 16 VAQLGYQKPTHIQ 28
>UNIPROTKB|F1NTS2 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9031 "Gallus gallus" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008143 "poly(A) RNA binding"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0045727 "positive regulation of translation"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0045727 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0035145 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008143
GeneTree:ENSGT00530000062880 IPI:IPI00588271 EMBL:AADN02041229
EMBL:AADN02041230 ProteinModelPortal:F1NTS2
Ensembl:ENSGALT00000038969 OMA:KTRNGVD ArrayExpress:F1NTS2
Uniprot:F1NTS2
Length = 414
Score = 297 (109.6 bits), Expect = 1.1e-32, Sum P(2) = 1.1e-32
Identities = 84/329 (25%), Positives = 175/329 (53%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ I G+ +P+ IQ+RAI I++ +DV+ ++++G+GKT F+I ++Q + QV
Sbjct: 52 LRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCL-----DIQV 106
Query: 90 QETKALVLSPSKELCNQLHK--NIQELTMKCSRDVKCV-DISEQVDVSVQEPLLVERPDI 146
+ET+AL+L+P++EL Q+ K + L +K K + ++VD+ P E
Sbjct: 107 RETQALILAPTRELAVQIQKVGTSKSLPVKMKELHKAMGSFKQEVDL----PAGHEVARC 162
Query: 147 VVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
+ + L ++ ++L ++ ++++++DEAD + + G+++ + V ++LP Q +L S
Sbjct: 163 ISGIQLQLLYMIRRRSLRTRA-IKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLIS 221
Query: 207 ATLSEDVLSLKHLILRNPV--ILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNL 264
ATL ++L + + + +P+ ++K +E + + Q + + +E+ K L L L
Sbjct: 222 ATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQF--FVAVEREEWKFDTLCDLYD-TL 278
Query: 265 VQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
+ +IF NT K L + + + ++ ++P K R + +F G V+I++D
Sbjct: 279 TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD 338
Query: 325 --EKALETPQINSTNNRKRKRDKESGVSR 351
+ L+ PQ++ N ++E + R
Sbjct: 339 VWARGLDVPQVSLIINYDLPNNRELYIHR 367
Score = 106 (42.4 bits), Expect = 1.1e-32, Sum P(2) = 1.1e-32
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND 403
+RG+D VS +IN+D P + + YIHR GR+ R +G A++FV + ++ D
Sbjct: 341 ARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRD 394
Score = 46 (21.3 bits), Expect = 2.2e-26, Sum P(2) = 2.2e-26
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 404 GTALSFVSLREQDLMNDVNEYLMTNLHE 431
G A++FV + ++ D+ +Y T + E
Sbjct: 378 GVAINFVKNDDIRILRDIEQYYSTQIDE 405
>UNIPROTKB|Q08DT0 [details] [associations]
symbol:DDX10 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
GeneTree:ENSGT00550000074980 CTD:1662 HOVERGEN:HBG102756
OrthoDB:EOG4BK536 OMA:ADKVIEP EMBL:DAAA02040206 EMBL:DAAA02040207
EMBL:DAAA02040208 EMBL:DAAA02040209 EMBL:DAAA02040210
EMBL:DAAA02040211 EMBL:DAAA02040212 EMBL:DAAA02040213
EMBL:DAAA02040214 EMBL:DAAA02040215 EMBL:DAAA02040216
EMBL:DAAA02040217 EMBL:BC123579 IPI:IPI00717487
RefSeq:NP_001070349.1 UniGene:Bt.63620 SMR:Q08DT0
Ensembl:ENSBTAT00000003086 GeneID:528483 KEGG:bta:528483
InParanoid:Q08DT0 NextBio:20874836 Uniprot:Q08DT0
Length = 876
Score = 310 (114.2 bits), Expect = 1.2e-32, Sum P(2) = 1.2e-32
Identities = 86/298 (28%), Positives = 159/298 (53%)
Query: 42 TLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSK 101
T IQ++ I L LQ KDVL A+TGSGKT AF +P+++ + L+ T+ L++SP++
Sbjct: 93 TEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTS-ADGLGVLIISPTR 151
Query: 102 ELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAK 161
EL Q + ++++ + D I D+ E + +I+V TP R L H+
Sbjct: 152 ELAYQTFEVLRKVGK--NHDFSAGLIIGGKDLK-HEAERINNINILVCTPGRLLQHMDET 208
Query: 162 TLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLIL 221
++L+++++DEAD + G+ D M A+++ LPK Q +L SAT ++ V L L L
Sbjct: 209 ICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPKKRQTLLFSATQTKSVKDLARLSL 268
Query: 222 RNPVILKLEEPA-IAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKC- 279
+NP + + E A + + L +I+ + +K ++LY+ L+ +L + K+I+F ++ +
Sbjct: 269 KNPEYVWVHEKAKYSTPATLEQNYIVCELQQKISVLYSFLRSHLKK-KSIVFFSSCKEVQ 327
Query: 280 YKLKLYLE-QFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD--EKALETPQIN 334
Y +++ + +S L+ R +F + V+ A+D + L+ P +N
Sbjct: 328 YLYRVFCRLRPGVSLLALHGRQQQMRRMEVYNEFVRKRAAVLFATDIAARGLDFPAVN 385
Score = 122 (48.0 bits), Expect = 1.2e-32, Sum P(2) = 1.2e-32
Identities = 33/88 (37%), Positives = 47/88 (53%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLRE-----QDLMNDG 404
+RG+DF V+ V+ FD P D YIHRAGRTAR K G AL + E Q L+
Sbjct: 376 ARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEEKGMVQQLLQKK 435
Query: 405 TALSFVSLREQDLMNDVNEYLMTNLHED 432
+ + + + L+ DV + L + L +D
Sbjct: 436 VPVKEIKINPEKLI-DVQKKLESFLAQD 462
>UNIPROTKB|E1BSE5 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 EMBL:AADN02041229
EMBL:AADN02041230 IPI:IPI00819993 Ensembl:ENSGALT00000013903
ArrayExpress:E1BSE5 Uniprot:E1BSE5
Length = 402
Score = 292 (107.8 bits), Expect = 1.3e-32, Sum P(2) = 1.3e-32
Identities = 84/328 (25%), Positives = 176/328 (53%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ I G+ +P+ IQ+RAI I++ +DV+ ++++G+GKT F+I ++Q + QV
Sbjct: 51 LRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCL-----DIQV 105
Query: 90 QETKALVLSPSKELCNQLHKNIQEL-TMKCSRDVKCVDIS-EQVDVSVQEPLLVERPDIV 147
+ET+AL+L+P++EL Q+ K++ + VKC S EQ ++ L + + +I
Sbjct: 106 RETQALILAPTRELAVQIQKSLLATGEVPVPPPVKCTVSSWEQCRLACFLSLFILQSEID 165
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
+ ++ ++L ++ ++++++DEAD + + G+++ + V ++LP Q +L SA
Sbjct: 166 M---------IRRRSLRTRA-IKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISA 215
Query: 208 TLSEDVLSLKHLILRNPV--ILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLV 265
TL ++L + + + +P+ ++K +E + + Q + + +E+ K L L L
Sbjct: 216 TLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQF--FVAVEREEWKFDTLCDLYD-TLT 272
Query: 266 QGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD- 324
+ +IF NT K L + + + ++ ++P K R + +F G V+I++D
Sbjct: 273 ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDV 332
Query: 325 -EKALETPQINSTNNRKRKRDKESGVSR 351
+ L+ PQ++ N ++E + R
Sbjct: 333 WARGLDVPQVSLIINYDLPNNRELYIHR 360
Score = 106 (42.4 bits), Expect = 1.3e-32, Sum P(2) = 1.3e-32
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND 403
+RG+D VS +IN+D P + + YIHR GR+ R +G A++FV + ++ D
Sbjct: 334 ARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRD 387
Score = 46 (21.3 bits), Expect = 2.4e-26, Sum P(2) = 2.4e-26
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 404 GTALSFVSLREQDLMNDVNEYLMTNLHE 431
G A++FV + ++ D+ +Y T + E
Sbjct: 371 GVAINFVKNDDIRILRDIEQYYSTQIDE 398
>UNIPROTKB|F1NYX0 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 OMA:CQLLSMT EMBL:AADN02071779
EMBL:AADN02071780 IPI:IPI00822654 Ensembl:ENSGALT00000035055
ArrayExpress:F1NYX0 Uniprot:F1NYX0
Length = 482
Score = 323 (118.8 bits), Expect = 1.7e-32, Sum P(2) = 1.7e-32
Identities = 94/314 (29%), Positives = 159/314 (50%)
Query: 35 KLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKA 94
++G PT +Q IP ILQ +D L A+TGSGKT AF +P++Q + +
Sbjct: 22 QMGLSRPTPVQASCIPPILQGRDCLGCAKTGSGKTAAFVLPVLQVL-----SEDPYGIFC 76
Query: 95 LVLSPSKELCNQLHKNIQELTMKCS-RDVKCVDISEQVDVSVQEPLLVERPDIVVATPAR 153
LVL+P++EL Q+ + + L +D CV + +D+ Q L +P +V+ATP R
Sbjct: 77 LVLTPTRELAYQIAEQFRVLGKPLGLKD--CVVVGG-LDMVAQALELSRKPHVVIATPGR 133
Query: 154 ALAHLKAK-TLDLKSSLEIVIIDEADLVFSFGYED---DMKAVLKFLPKLYQAILASATL 209
HL++ T LK L+ +++DEAD + G D D++ +L+ +P Q +L SATL
Sbjct: 134 LADHLRSSNTFSLKK-LKFLVLDEADRLLEQGCADFTADLEVILEAVPARRQTLLFSATL 192
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
++ + LK L + P + + V +L ++L E K L L++ + +
Sbjct: 193 TDTLNELKSLAMNRPFFWEAASE-VRTVDELDQRYLLVPEAVKDAYLVHLIQTFQDEHED 251
Query: 270 ---IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
IIF T +C L + L +F + L+S + + R A+ +F ++ ++IA+D
Sbjct: 252 WSIIIFTKTCKECQILNMMLRKFSFPSVALHSMMKQRQRFAALAKFKSSIFKILIATDVA 311
Query: 327 A--LETPQINSTNN 338
A L+ P + N
Sbjct: 312 ARGLDIPTVQVVIN 325
Score = 87 (35.7 bits), Expect = 1.7e-32, Sum P(2) = 1.7e-32
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVS 394
+RG+D V VIN + P + YIHR GRTAR G +++ V+
Sbjct: 312 ARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGISITMVT 356
>SGD|S000004903 [details] [associations]
symbol:HAS1 "ATP-dependent RNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0008186 "RNA-dependent ATPase
activity" evidence=IDA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA;IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA]
[GO:0005635 "nuclear envelope" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=IEA;IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0030686 "90S preribosome"
evidence=IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000004903 GO:GO:0005524
GO:GO:0005635 GO:GO:0005730 GO:GO:0003723 EMBL:BK006946
GO:GO:0030687 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030686 GO:GO:0006364 GO:GO:0004004 EMBL:X80836
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY GeneTree:ENSGT00680000100037 OrthoDB:EOG4ZKNVS
PIR:S47451 RefSeq:NP_014017.1 ProteinModelPortal:Q03532 SMR:Q03532
DIP:DIP-4396N IntAct:Q03532 MINT:MINT-482816 STRING:Q03532
PaxDb:Q03532 PeptideAtlas:Q03532 EnsemblFungi:YMR290C GeneID:855335
KEGG:sce:YMR290C CYGD:YMR290c NextBio:979064 Genevestigator:Q03532
GermOnline:YMR290C Uniprot:Q03532
Length = 505
Score = 309 (113.8 bits), Expect = 2.2e-32, Sum P(2) = 2.2e-32
Identities = 93/313 (29%), Positives = 165/313 (52%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AI K+G+ T +Q R IP +L +DVL A+TGSGKT AF IP I+ + +LK +
Sbjct: 54 LKAIEKMGFTTMTSVQARTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIELLHSLKFKPR- 112
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T +V++P++EL Q+ +EL M+ + I E L+ + ++++A
Sbjct: 113 NGTGIIVITPTRELALQIFGVAREL-MEFHSQTFGIVIGGANRRQEAEKLM-KGVNMLIA 170
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL-YQAILASAT 208
TP R L HL+ + +L+ +IIDEAD + G+ED+M+ ++K LP Q++L SAT
Sbjct: 171 TPGRLLDHLQNTKGFVFKNLKALIIDEADRILEIGFEDEMRQIIKILPNEDRQSMLFSAT 230
Query: 209 LSEDVLSLKHLILR-NPVILKL-EEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQ 266
+ V L + LR P+ + + E + L +++ D++ +L++ LK N +
Sbjct: 231 QTTKVEDLARISLRPGPLFINVVPETDNSTADGLEQGYVVCDSDKRFLLLFSFLKRNQKK 290
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFK---ISTCVLNSELPAKARCHAVYQFNQGLYDVIIAS 323
K I+F+++ C +K Y E + L+ + + R + ++F ++I +
Sbjct: 291 -KIIVFLSS---CNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILICT 346
Query: 324 DEKA--LETPQIN 334
D A L+ P ++
Sbjct: 347 DVAARGLDIPAVD 359
Score = 107 (42.7 bits), Expect = 2.2e-32, Sum P(2) = 2.2e-32
Identities = 24/49 (48%), Positives = 32/49 (65%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARG-KNQGTALSFVSLRE 397
+RG+D V +I FD P D + YIHR GRTARG K +G +L F++ E
Sbjct: 350 ARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTKGKGKSLMFLTPNE 398
>UNIPROTKB|F1NJA0 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 GeneTree:ENSGT00550000074969 IPI:IPI00590534
OMA:CACVEYW EMBL:AADN02034882 Ensembl:ENSGALT00000005224
Uniprot:F1NJA0
Length = 591
Score = 371 (135.7 bits), Expect = 2.4e-32, P = 2.4e-32
Identities = 117/388 (30%), Positives = 198/388 (51%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L A+ LG+ T +Q IPL + NKDV A TGSGKT AF IP+++ ++ ++ +
Sbjct: 21 LLALQDLGFDRMTPVQSATIPLFMSNKDVAAEAVTGSGKTLAFVIPILEILLRREEKLKK 80
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ A++++P++EL Q+ + + T + + + I + + E +I+VA
Sbjct: 81 MQVGAIIITPTRELAIQIDEVLTHFTKHFPKFSQILLIGGRNPMEDVEKFKEHGGNIIVA 140
Query: 150 TPARA--LAHLKAKTLDLKS---SLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAIL 204
TP R L KA LDL S SL+++++DEAD + G+E + A+L FLPK + L
Sbjct: 141 TPGRLEDLFRRKADGLDLASCVKSLDVLVLDEADRLLDMGFESSLNAILAFLPKQRRTGL 200
Query: 205 ASATLSEDVLSLKHLILRNPVILKLEEPAIAPVS------QLAHYHILAQEDEKATILYT 258
SAT +++V +L LRNPV + ++E +A + +L +Y+++ + DEK L
Sbjct: 201 FSATQTQEVENLVRAGLRNPVRISVKEKGVAATNTQKTPTRLENYYMICKADEKFNQLVH 260
Query: 259 LLKLNLVQGKTIIFVNT---VDKCYK-LKLYLEQFKISTCVLNSELPAKARCHAVYQFNQ 314
L+ + Q K ++F +T V+ K L+ ++Q KI C+ + ++ K R +F +
Sbjct: 261 FLRQHK-QEKHLVFFSTCACVEYYGKALESLIKQVKIM-CI-HGKMKHK-RNKIFTEFRR 316
Query: 315 GLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYI 374
+++ +D A RGID V V+ +D P ++
Sbjct: 317 LAGGILVCTDVMA-----------------------RGIDIPEVHWVLQYDPPSSASAFV 353
Query: 375 HRAGRTARGKNQGTALSFVSLREQDLMN 402
HR GRTAR N G+AL F+ E+ +N
Sbjct: 354 HRCGRTARIGNAGSALVFLLPMEESYIN 381
>ZFIN|ZDB-GENE-021212-1 [details] [associations]
symbol:ddx55 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
55" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-021212-1 GO:GO:0007275 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P26196 CTD:57696
HOGENOM:HOG000268803 HOVERGEN:HBG107796 KO:K14809 OrthoDB:EOG4WH8KN
EMBL:AF506203 EMBL:BC059534 IPI:IPI00493927 RefSeq:NP_775336.1
UniGene:Dr.16883 ProteinModelPortal:Q8JHJ2 STRING:Q8JHJ2
GeneID:286745 KEGG:dre:286745 InParanoid:Q8JHJ2 NextBio:20806420
ArrayExpress:Q8JHJ2 Uniprot:Q8JHJ2
Length = 593
Score = 371 (135.7 bits), Expect = 2.4e-32, P = 2.4e-32
Identities = 110/384 (28%), Positives = 199/384 (51%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQ + +LG+ T +Q IPL + NKDV A TGSGKT AF IP ++ ++ ++ +
Sbjct: 21 LQTLKELGFTYMTPVQSACIPLFMSNKDVAAEAVTGSGKTLAFVIPALEILLKREEKLKK 80
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ AL+++P++EL Q+ + + + + + I + E L + +I++A
Sbjct: 81 MQVGALIITPTRELAMQISEVMGRFLQGFPQFTQILLIGGSNPIEDVEKLKTQGANIIIA 140
Query: 150 TPARA--LAHLKAKTLDLKS---SLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAIL 204
TP R + KA LDL + SL+++++DEAD + G+E + +L +LPK + L
Sbjct: 141 TPGRLEDMFRRKADGLDLATAVKSLDVLVLDEADRLLDMGFEASLNTILGYLPKQRRTGL 200
Query: 205 ASATLSEDVLSLKHLILRNPVILKLEEPAIAPVS------QLAHYHILAQEDEKATILYT 258
SAT ++++ L LRNPV + ++E +A S +L++Y+ + + +EK L
Sbjct: 201 FSATQTQELEKLVRAGLRNPVRITVKEKGVAASSVQKTPAKLSNYYTMCRAEEKFNTLVA 260
Query: 259 LLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYD 318
L+ + + K ++F +T C ++ + + ++ V N + H ++ + +
Sbjct: 261 FLRQHKHE-KQLVFFST---CACVEYFGKALEV--LVKNVSI------HCIHGKMKHKRN 308
Query: 319 VIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAG 378
I A D +AL++ + T+ ++RGID V+ V+ +D P ++HR G
Sbjct: 309 KIFA-DFRALKSGILVCTDV----------MARGIDIPEVNWVLQYDPPSSASSFVHRCG 357
Query: 379 RTARGKNQGTALSFVSLREQDLMN 402
RTAR NQG AL F+ E+ +N
Sbjct: 358 RTARIGNQGNALVFLLPMEESYVN 381
>ASPGD|ASPL0000044206 [details] [associations]
symbol:AN1949 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0030686 "90S
preribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005635 "nuclear envelope" evidence=IEA] [GO:0030687
"preribosome, large subunit precursor" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 EMBL:BN001307
GO:GO:0003723 EMBL:AACD01000029 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY RefSeq:XP_659553.1
ProteinModelPortal:Q5BBY1 STRING:Q5BBY1
EnsemblFungi:CADANIAT00008609 GeneID:2875602 KEGG:ani:AN1949.2
OrthoDB:EOG4ZKNVS Uniprot:Q5BBY1
Length = 609
Score = 314 (115.6 bits), Expect = 2.6e-32, Sum P(2) = 2.6e-32
Identities = 92/311 (29%), Positives = 164/311 (52%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
LQ I ++G+ T IQ+R IP +L +DVL A+TGSGKT AF IP I+ + L+ +
Sbjct: 140 LQGIKEMGFETMTEIQQRTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEMLSALRFKPR- 198
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T +V+SP++EL Q+ +EL S+ V ++ L + ++++A
Sbjct: 199 NGTGVIVVSPTRELALQIFGVARELLTAHSQTYGIVIGGANRRAEAEK--LTKGVNLLIA 256
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL-YQAILASAT 208
TP R L HL+ + +L+ ++IDEAD + G+ED+M+ ++K LP Q +L SAT
Sbjct: 257 TPGRLLDHLQNTPGFVFKNLKTLVIDEADRILEVGFEDEMRQIIKILPNEDRQTMLFSAT 316
Query: 209 LSEDVLSLKHLILR-NPVILKLEE-PAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQ 266
+ V L + LR P+ + ++ + V L +++ + D++ +L++ LK NL +
Sbjct: 317 QTTKVEDLARISLRPGPLYINVDHRKEHSTVEGLEQGYVICEADKRFLLLFSFLKRNLKK 376
Query: 267 GKTIIFVNTVDKCYKLKLYLEQF-KISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDE 325
K I+F ++ + C K L + + L+ + + R + ++F V+I +D
Sbjct: 377 -KIIVFFSSCN-CVKYHAELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQGVLICTDV 434
Query: 326 KA--LETPQIN 334
A L+ P ++
Sbjct: 435 AARGLDIPAVD 445
Score = 107 (42.7 bits), Expect = 2.6e-32, Sum P(2) = 2.6e-32
Identities = 24/49 (48%), Positives = 31/49 (63%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKN-QGTALSFVSLRE 397
+RG+D V +I FD P D + YIHR GRTARG N +G +L F+ E
Sbjct: 436 ARGLDIPAVDWIIQFDPPDDTRDYIHRVGRTARGANGRGRSLMFLQPSE 484
>SGD|S000001767 [details] [associations]
symbol:TIF1 "Translation initiation factor eIF4A"
species:4932 "Saccharomyces cerevisiae" [GO:0003743 "translation
initiation factor activity" evidence=IEA;IMP;IDA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006413 "translational
initiation" evidence=IEA;IMP;IDA] [GO:0006412 "translation"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IMP;IDA] [GO:0005840 "ribosome" evidence=TAS] [GO:0016281
"eukaryotic translation initiation factor 4F complex"
evidence=IGI;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000001767
SGD:S000003674 GO:GO:0005524 GO:GO:0005737 EMBL:BK006943
EMBL:BK006944 GO:GO:0003743 EMBL:X87371 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 KO:K03854
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 EMBL:U25436 KO:K03257
OMA:IKMFILD OrthoDB:EOG4PG98F EMBL:X12813 EMBL:X12814 EMBL:X58099
EMBL:Z49413 EMBL:Z28284 PIR:S05835 RefSeq:NP_012397.1
RefSeq:NP_012985.3 RefSeq:NP_012987.3 PDB:1FUK PDB:1FUU PDB:1QDE
PDB:1QVA PDB:2VSO PDB:2VSX PDBsum:1FUK PDBsum:1FUU PDBsum:1QDE
PDBsum:1QVA PDBsum:2VSO PDBsum:2VSX ProteinModelPortal:P10081
SMR:P10081 DIP:DIP-4571N IntAct:P10081 MINT:MINT-546056
STRING:P10081 SWISS-2DPAGE:P10081 PaxDb:P10081 EnsemblFungi:YJL138C
EnsemblFungi:YKR059W GeneID:853303 GeneID:853933 GeneID:853935
KEGG:sce:YJL138C KEGG:sce:YKR059W KEGG:sce:YKR061W SABIO-RK:P10081
EvolutionaryTrace:P10081 NextBio:973627 Genevestigator:P10081
GermOnline:YJL138C GermOnline:YKR059W Uniprot:P10081
Length = 395
Score = 332 (121.9 bits), Expect = 5.3e-32, Sum P(2) = 5.3e-32
Identities = 98/343 (28%), Positives = 175/343 (51%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ + G+ EP+ IQ+RAI I++ DVL +A++G+GKTG F+I +Q+I V
Sbjct: 34 LRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRI-----DTSV 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVK-CVDISEQVDVSVQEPLLVERPDIVV 148
+ +AL+L+P++EL Q+ K + L V C+ + V+ + E L IVV
Sbjct: 89 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDA--EGL--RDAQIVV 144
Query: 149 ATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
TP R +++ + +++ I+DEAD + S G+++ + + LP Q +L SAT
Sbjct: 145 GTPGRVFDNIQRRRFRT-DKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSAT 203
Query: 209 LSEDVLSLKHLILRNPV--ILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQ 266
+ DVL + +RNPV ++K +E + + Q +++ +E+E T L ++
Sbjct: 204 MPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQ---FYVNVEEEEYKYECLTDLYDSISV 260
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD-- 324
+ +IF NT K +L L K + + S+LP + R + +F G ++I++D
Sbjct: 261 TQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLL 320
Query: 325 EKALETPQINSTNNRKRKRDKES---GVSRGIDFQFVSNVINF 364
+ ++ Q++ N +KE+ + RG F INF
Sbjct: 321 ARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINF 363
Score = 121 (47.7 bits), Expect = 0.00028, P = 0.00028
Identities = 28/73 (38%), Positives = 44/73 (60%)
Query: 349 VSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALS 408
++RGID Q VS VIN+D P + + YIHR GR R +G A++FV+ + M +
Sbjct: 320 LARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRE--LEK 377
Query: 409 FVSLREQDLMNDV 421
F S + ++L +D+
Sbjct: 378 FYSTQIEELPSDI 390
Score = 41 (19.5 bits), Expect = 5.3e-32, Sum P(2) = 5.3e-32
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 404 GTALSFVSLREQDLMNDVNEYLMTNLHE 431
G A++FV+ + M ++ ++ T + E
Sbjct: 358 GVAINFVTNEDVGAMRELEKFYSTQIEE 385
>SGD|S000003674 [details] [associations]
symbol:TIF2 "Translation initiation factor eIF4A"
species:4932 "Saccharomyces cerevisiae" [GO:0003743 "translation
initiation factor activity" evidence=IEA;ISS;IDA;TAS] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;ISS;IDA] [GO:0006446 "regulation of translational
initiation" evidence=ISS] [GO:0005840 "ribosome" evidence=TAS]
[GO:0016281 "eukaryotic translation initiation factor 4F complex"
evidence=IGI;ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IMP] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0006413 "translational initiation"
evidence=IEA;TAS] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000001767 SGD:S000003674 GO:GO:0005524
GO:GO:0005737 EMBL:BK006943 EMBL:BK006944 GO:GO:0003743 EMBL:X87371
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
KO:K03854 eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 EMBL:U25436 KO:K03257
OMA:IKMFILD OrthoDB:EOG4PG98F EMBL:X12813 EMBL:X12814 EMBL:X58099
EMBL:Z49413 EMBL:Z28284 PIR:S05835 RefSeq:NP_012397.1
RefSeq:NP_012985.3 RefSeq:NP_012987.3 PDB:1FUK PDB:1FUU PDB:1QDE
PDB:1QVA PDB:2VSO PDB:2VSX PDBsum:1FUK PDBsum:1FUU PDBsum:1QDE
PDBsum:1QVA PDBsum:2VSO PDBsum:2VSX ProteinModelPortal:P10081
SMR:P10081 DIP:DIP-4571N IntAct:P10081 MINT:MINT-546056
STRING:P10081 SWISS-2DPAGE:P10081 PaxDb:P10081 EnsemblFungi:YJL138C
EnsemblFungi:YKR059W GeneID:853303 GeneID:853933 GeneID:853935
KEGG:sce:YJL138C KEGG:sce:YKR059W KEGG:sce:YKR061W SABIO-RK:P10081
EvolutionaryTrace:P10081 NextBio:973627 Genevestigator:P10081
GermOnline:YJL138C GermOnline:YKR059W Uniprot:P10081
Length = 395
Score = 332 (121.9 bits), Expect = 5.3e-32, Sum P(2) = 5.3e-32
Identities = 98/343 (28%), Positives = 175/343 (51%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ + G+ EP+ IQ+RAI I++ DVL +A++G+GKTG F+I +Q+I V
Sbjct: 34 LRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRI-----DTSV 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVK-CVDISEQVDVSVQEPLLVERPDIVV 148
+ +AL+L+P++EL Q+ K + L V C+ + V+ + E L IVV
Sbjct: 89 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDA--EGL--RDAQIVV 144
Query: 149 ATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
TP R +++ + +++ I+DEAD + S G+++ + + LP Q +L SAT
Sbjct: 145 GTPGRVFDNIQRRRFRT-DKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSAT 203
Query: 209 LSEDVLSLKHLILRNPV--ILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQ 266
+ DVL + +RNPV ++K +E + + Q +++ +E+E T L ++
Sbjct: 204 MPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQ---FYVNVEEEEYKYECLTDLYDSISV 260
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD-- 324
+ +IF NT K +L L K + + S+LP + R + +F G ++I++D
Sbjct: 261 TQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLL 320
Query: 325 EKALETPQINSTNNRKRKRDKES---GVSRGIDFQFVSNVINF 364
+ ++ Q++ N +KE+ + RG F INF
Sbjct: 321 ARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINF 363
Score = 121 (47.7 bits), Expect = 0.00028, P = 0.00028
Identities = 28/73 (38%), Positives = 44/73 (60%)
Query: 349 VSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALS 408
++RGID Q VS VIN+D P + + YIHR GR R +G A++FV+ + M +
Sbjct: 320 LARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRE--LEK 377
Query: 409 FVSLREQDLMNDV 421
F S + ++L +D+
Sbjct: 378 FYSTQIEELPSDI 390
Score = 41 (19.5 bits), Expect = 5.3e-32, Sum P(2) = 5.3e-32
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 404 GTALSFVSLREQDLMNDVNEYLMTNLHE 431
G A++FV+ + M ++ ++ T + E
Sbjct: 358 GVAINFVTNEDVGAMRELEKFYSTQIEE 385
>RGD|1308990 [details] [associations]
symbol:Ddx10 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 10"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1308990
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CH473975 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000074980 CTD:1662 OrthoDB:EOG4BK536 OMA:ADKVIEP
IPI:IPI00869603 RefSeq:NP_001100290.1 UniGene:Rn.99481
Ensembl:ENSRNOT00000017683 GeneID:300710 KEGG:rno:300710
UCSC:RGD:1308990 NextBio:647348 Uniprot:D3ZBY5
Length = 874
Score = 304 (112.1 bits), Expect = 6.0e-32, Sum P(2) = 6.0e-32
Identities = 85/298 (28%), Positives = 159/298 (53%)
Query: 42 TLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSK 101
T IQ++ I L LQ KDVL A+TGSGKT AF +P+++ + L+ T+ L++SP++
Sbjct: 93 TEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTS-TDGLGVLIISPTR 151
Query: 102 ELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAK 161
EL Q + ++++ + D I D+ E + +I+V TP R L H+
Sbjct: 152 ELAYQTFEVLRKVGK--NHDFSAGLIIGGKDLK-HEAERINNINILVCTPGRLLQHMDET 208
Query: 162 TLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLIL 221
++L+++++DEAD + G+ D M A+++ LPK Q +L SAT ++ V L L L
Sbjct: 209 ICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPKKRQTLLFSATQTKSVKDLARLSL 268
Query: 222 RNPVILKLEEPA-IAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKC- 279
++P + + E A + + L +I+ + +K ++L++ L+ +L + K+I+F ++ +
Sbjct: 269 KDPEYVWVHEKAKYSTPATLEQNYIICELHQKISVLFSFLRSHLTK-KSIVFFSSCKEVQ 327
Query: 280 YKLKLYLE-QFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD--EKALETPQIN 334
Y +++ + IS L+ R +F + V+ A+D + L+ P +N
Sbjct: 328 YLYRVFCRLRPGISILALHGRQQQMRRMEVYNEFVRKRAAVLFATDIAARGLDFPAVN 385
Score = 122 (48.0 bits), Expect = 6.0e-32, Sum P(2) = 6.0e-32
Identities = 33/88 (37%), Positives = 47/88 (53%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLRE-----QDLMNDG 404
+RG+DF V+ V+ FD P D YIHRAGRTAR K G AL + E Q L+
Sbjct: 376 ARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEEQGMVQQLLQKK 435
Query: 405 TALSFVSLREQDLMNDVNEYLMTNLHED 432
+ + + + L+ DV + L + L +D
Sbjct: 436 VPVKEIKINPEKLI-DVQKRLESFLAQD 462
>UNIPROTKB|Q8ECL2 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 351 (128.6 bits), Expect = 7.3e-32, P = 7.3e-32
Identities = 93/298 (31%), Positives = 152/298 (51%)
Query: 29 PL-QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTA 87
PL + +LG++ PT +Q IP +L +DVL A TGSGKT AFA+P++Q++ K
Sbjct: 19 PLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPLLQRLSEAKSAD 78
Query: 88 Q-VQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDI 146
+ + LVL P++EL Q+ + + +K V V V++Q L D+
Sbjct: 79 KSAGVVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNLQMQSLRAGADV 138
Query: 147 VVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
+VATP R L L + L L + + ++DEAD + S G+ ++++ VL LP+ Q +L S
Sbjct: 139 LVATPGRLLDLLASNALKL-TQVSAFVLDEADRMLSLGFTEELEQVLAALPRQKQTLLFS 197
Query: 207 ATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQ 266
AT E+V +L +L P+ L+ + + Q I ++K +L L+K +
Sbjct: 198 ATFPEEVRALTTKLLHQPLEYHLQSEQESTIEQRV---ITVNREQKTALLAHLIKQHQ-W 253
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
+ +IFV+ + C L L + IS V + + AR + F G V+IA+D
Sbjct: 254 SQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISVLIATD 311
>TIGR_CMR|SO_3125 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 351 (128.6 bits), Expect = 7.3e-32, P = 7.3e-32
Identities = 93/298 (31%), Positives = 152/298 (51%)
Query: 29 PL-QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTA 87
PL + +LG++ PT +Q IP +L +DVL A TGSGKT AFA+P++Q++ K
Sbjct: 19 PLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPLLQRLSEAKSAD 78
Query: 88 Q-VQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDI 146
+ + LVL P++EL Q+ + + +K V V V++Q L D+
Sbjct: 79 KSAGVVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNLQMQSLRAGADV 138
Query: 147 VVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILAS 206
+VATP R L L + L L + + ++DEAD + S G+ ++++ VL LP+ Q +L S
Sbjct: 139 LVATPGRLLDLLASNALKL-TQVSAFVLDEADRMLSLGFTEELEQVLAALPRQKQTLLFS 197
Query: 207 ATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQ 266
AT E+V +L +L P+ L+ + + Q I ++K +L L+K +
Sbjct: 198 ATFPEEVRALTTKLLHQPLEYHLQSEQESTIEQRV---ITVNREQKTALLAHLIKQHQ-W 253
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
+ +IFV+ + C L L + IS V + + AR + F G V+IA+D
Sbjct: 254 SQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISVLIATD 311
>DICTYBASE|DDB_G0291804 [details] [associations]
symbol:ddx6 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0291804 GO:GO:0005524 GO:GO:0005737
GenomeReviews:CM000155_GR GO:GO:0006397 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
EMBL:AAFI02000185 RefSeq:XP_629938.1 HSSP:P39517
ProteinModelPortal:Q54E49 SMR:Q54E49 PRIDE:Q54E49
EnsemblProtists:DDB0234196 GeneID:8628344 KEGG:ddi:DDB_G0291804
OMA:QFMEKHL ProtClustDB:CLSZ2429504 Uniprot:Q54E49
Length = 423
Score = 292 (107.8 bits), Expect = 7.5e-32, Sum P(2) = 7.5e-32
Identities = 94/328 (28%), Positives = 168/328 (51%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ I + G+++P+ IQE+AIP+ L +D++ RA+ G+GKT +F IP ++K K QV
Sbjct: 61 LRGIFEKGYVKPSPIQEKAIPIALAGRDIMARAKNGTGKTASFLIPALEKTDPTKDVIQV 120
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLL-VERP-DIV 147
L+L P++EL Q + +EL + V ++ S+++ ++ + P I+
Sbjct: 121 -----LILVPTRELALQTSQVCKELGKYMNVQV----MASTGGTSLKDDIMRLYNPVHIL 171
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
VATP R L L K + S+ +I+DEAD + S ++ ++ ++ FLP+ Q +L SA
Sbjct: 172 VATPGRVL-DLAQKNVANLSNCHTMIMDEADKLLSQEFQPLVEQLINFLPQQRQILLFSA 230
Query: 208 TLSEDVLSLKHLILRNPVILKL-EEPAIAPVSQLAHYHILAQEDEKATILYTLL-KLNLV 265
T V S K L+ + L EE + V+Q Y+ +E +K L TL KL +
Sbjct: 231 TFPVTVKSFKEHYLQQAFEINLMEELTLKGVTQ---YYAFVEERQKIHCLNTLFSKLQIN 287
Query: 266 QGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD- 324
Q +IIF N+V++ L + + S +++++ R + F G +++SD
Sbjct: 288 Q--SIIFCNSVNRVELLAKKITELGYSCFFIHAKMVQAHRNRVFHDFRNGACRNLVSSDL 345
Query: 325 -EKALETPQINSTNNRKRKRDKESGVSR 351
+ ++ +N N + E+ + R
Sbjct: 346 FTRGIDIQDVNVVINFDFPKHSETYLHR 373
Score = 111 (44.1 bits), Expect = 7.5e-32, Sum P(2) = 7.5e-32
Identities = 21/49 (42%), Positives = 33/49 (67%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQ 398
+RGID Q V+ VINFDFP + Y+HR GR+ R + G A++ ++ ++
Sbjct: 347 TRGIDIQDVNVVINFDFPKHSETYLHRIGRSGRFGHLGLAINLITYEDR 395
>ZFIN|ZDB-GENE-030131-6611 [details] [associations]
symbol:wu:fk48d07 "wu:fk48d07" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-030131-6611 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00530000063986 KO:K12614 InterPro:IPR014014
PROSITE:PS51195 OMA:HIDPARF EMBL:CR391937 IPI:IPI00901625
RefSeq:XP_001340860.1 UniGene:Dr.104819 UniGene:Dr.127773
Ensembl:ENSDART00000114495 GeneID:100007313 KEGG:dre:100007313
NextBio:20787456 Uniprot:E7F1G8
Length = 483
Score = 291 (107.5 bits), Expect = 8.9e-32, Sum P(2) = 8.9e-32
Identities = 90/340 (26%), Positives = 177/340 (52%)
Query: 23 FTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQK 79
F +C+ L I ++GW +P+ IQE +IP+ L +D+L RA+ G+GK+GA+ IP++++
Sbjct: 90 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 149
Query: 80 IINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVD-VSVQEP 138
I +LK+ +Q A+VL P++EL Q + ++++ S+ + + + ++++
Sbjct: 150 I-DLKKD-YIQ---AIVLVPTRELALQ----VSQISINMSKHLGGIKVMATTGGTNLRDD 200
Query: 139 L--LVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFL 196
+ L E +++ATP R L +K K + +++ ++DEAD + S + ++ ++ FL
Sbjct: 201 IMRLDEIVHVIIATPGRILDLIK-KGVAKVDKVQMAVMDEADKLLSQDFVVLIEDIISFL 259
Query: 197 PKLYQAILASAT--LSEDVLSLKHLILRNPVILKL-EEPAIAPVSQLAHYHILAQEDEKA 253
PK Q +L SAT +S KHL + P + L +E + ++Q Y+ E +K
Sbjct: 260 PKKRQILLYSATFPISVQKFMTKHL--QKPYEINLMDELTLKGITQ---YYAYVTERQKV 314
Query: 254 TILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFN 313
L TL L ++IIF N+ + L + Q S +++++ + R + F
Sbjct: 315 HCLNTLFS-RLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAKMMQEYRNRVFHDFR 373
Query: 314 QGLYDVIIASD--EKALETPQINSTNNRKRKRDKESGVSR 351
GL ++ +D + ++ +N N ++ E+ + R
Sbjct: 374 NGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHR 413
Score = 121 (47.7 bits), Expect = 8.9e-32, Sum P(2) = 8.9e-32
Identities = 31/96 (32%), Positives = 54/96 (56%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSF 409
+RGID Q V+ VINFDFP + + Y+HR GR+ R + G A++ ++ +D N L
Sbjct: 387 TRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRYGHLGLAINLIT--SEDRFN----LKG 440
Query: 410 VSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDE 445
+ E LM D+ + +++ + ++ + + N DE
Sbjct: 441 I---EDQLMTDIKP-IPSSIDKSLYVAEFHSMNPDE 472
>MGI|MGI:1924841 [details] [associations]
symbol:Ddx10 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 10"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1924841 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
GeneTree:ENSGT00550000074980 CTD:1662 HOVERGEN:HBG102756
OrthoDB:EOG4BK536 OMA:ADKVIEP ChiTaRS:DDX10 EMBL:BC049261
IPI:IPI00896604 RefSeq:NP_084212.2 UniGene:Mm.133560
ProteinModelPortal:Q80Y44 SMR:Q80Y44 STRING:Q80Y44
PhosphoSite:Q80Y44 PaxDb:Q80Y44 PRIDE:Q80Y44
Ensembl:ENSMUST00000065630 GeneID:77591 KEGG:mmu:77591
UCSC:uc009plz.2 InParanoid:Q80Y44 NextBio:347162 Bgee:Q80Y44
CleanEx:MM_DDX10 Genevestigator:Q80Y44
GermOnline:ENSMUSG00000053289 Uniprot:Q80Y44
Length = 875
Score = 302 (111.4 bits), Expect = 1.0e-31, Sum P(2) = 1.0e-31
Identities = 85/298 (28%), Positives = 159/298 (53%)
Query: 42 TLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSK 101
T IQ++ I L LQ KDVL A+TGSGKT AF +P+++ + L+ T+ L++SP++
Sbjct: 93 TEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTS-TDGLGVLIISPTR 151
Query: 102 ELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAK 161
EL Q + ++++ + D I D+ E + +I+V TP R L H+
Sbjct: 152 ELAYQTFEVLRKVGK--NHDFSAGLIIGGKDLK-HEAERINNINILVCTPGRLLQHMDET 208
Query: 162 TLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLIL 221
++L+++++DEAD + G+ D M A+++ LPK Q +L SAT ++ V L L L
Sbjct: 209 ICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPKKRQTLLFSATQTKSVKDLARLSL 268
Query: 222 RNPVILKLEEPA-IAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKC- 279
++P + + E A + + L +I+ + +K ++L++ L+ +L + K+I+F ++ +
Sbjct: 269 KDPEYVWVHEKAKYSTPATLEQNYIICELHQKISVLFSFLRSHLKK-KSIVFFSSCKEVQ 327
Query: 280 YKLKLYLE-QFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD--EKALETPQIN 334
Y +++ + IS L+ R +F + V+ A+D + L+ P +N
Sbjct: 328 YLYRVFCRLRPGISILALHGRQQQMRRMEVYNEFVRKRAAVLFATDIAARGLDFPAVN 385
Score = 122 (48.0 bits), Expect = 1.0e-31, Sum P(2) = 1.0e-31
Identities = 33/88 (37%), Positives = 47/88 (53%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLRE-----QDLMNDG 404
+RG+DF V+ V+ FD P D YIHRAGRTAR K G AL + E Q L+
Sbjct: 376 ARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEEQGMVQQLLQKK 435
Query: 405 TALSFVSLREQDLMNDVNEYLMTNLHED 432
+ + + + L+ DV + L + L +D
Sbjct: 436 VPVKEIKINPEKLI-DVQKKLESFLAQD 462
>UNIPROTKB|Q9KKW0 [details] [associations]
symbol:VCA0990 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GenomeReviews:AE003853_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 OMA:IGAKENA ProtClustDB:CLSK869861
EMBL:AE004426 PIR:H82390 RefSeq:NP_233374.1
ProteinModelPortal:Q9KKW0 DNASU:2612329 GeneID:2612329
KEGG:vch:VCA0990 PATRIC:20086502 Uniprot:Q9KKW0
Length = 428
Score = 279 (103.3 bits), Expect = 1.2e-31, Sum P(2) = 1.2e-31
Identities = 95/323 (29%), Positives = 158/323 (48%)
Query: 8 LEPTLIQVYFEL-PFTFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRAR 63
+ PTL Y + P +F+ + +QA+ K EP+ IQ IP +L KDV A
Sbjct: 9 IRPTLFFEYSGIQPMSFSSLALSADLIQALPK-AITEPSAIQTLVIPAMLTGKDVFALAN 67
Query: 64 TGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVK 123
TGSGKT A+ +P+++++ +T+ Q+ ALVL P++EL Q+ + + + +
Sbjct: 68 TGSGKTLAYGLPLLERL----KTSPEQQ--ALVLVPTRELAMQVSEVLTHVGTALGLNTL 121
Query: 124 CVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSF 183
C + VD + Q+ L E P+I+VAT R L L L L + + +++DEAD +
Sbjct: 122 C--LCGGVDKTEQQNALAENPNILVATTGR-LFDLTQSGLRL-NRVTTLVLDEADRLLDM 177
Query: 184 GYEDDMKAVLKFLPKLYQAILASATLSEDVLSLK-HLILRNPVILKLE-EPAIAPVSQLA 241
G+ ++A+ + Q ++ SAT S+D L LK ++R P + E +I Q
Sbjct: 178 GFWPQVQALASQTAGVRQTVMCSATFSDD-LKLKAQQLMRAPTQVSANPENSINQAVQET 236
Query: 242 HYHILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELP 301
Y L + K L LLK + + ++F+ + L L + I VL+ +
Sbjct: 237 LY--LVNKGSKTQALVALLKQHQWP-QVLVFIGAKENADSLTKKLNKAGIVATVLHGDKS 293
Query: 302 AKARCHAVYQFNQGLYDVIIASD 324
R A+ +F G V+IA+D
Sbjct: 294 QSEREAALAEFKNGTTQVLIATD 316
Score = 128 (50.1 bits), Expect = 1.2e-31, Sum P(2) = 1.2e-31
Identities = 28/69 (40%), Positives = 39/69 (56%)
Query: 349 VSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALS 408
++RGI + + VINF+ P+ + Y+HR GRTAR G ALS V E D +N L+
Sbjct: 318 LARGIHIELLPVVINFELPMHAETYVHRVGRTARAGQHGIALSLVCHGEMDALNATRTLT 377
Query: 409 FVSLREQDL 417
L Q+L
Sbjct: 378 QRELPVQNL 386
>TIGR_CMR|VC_A0990 [details] [associations]
symbol:VC_A0990 "ATP-dependent RNA helicase, DEAD box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GenomeReviews:AE003853_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 OMA:IGAKENA ProtClustDB:CLSK869861
EMBL:AE004426 PIR:H82390 RefSeq:NP_233374.1
ProteinModelPortal:Q9KKW0 DNASU:2612329 GeneID:2612329
KEGG:vch:VCA0990 PATRIC:20086502 Uniprot:Q9KKW0
Length = 428
Score = 279 (103.3 bits), Expect = 1.2e-31, Sum P(2) = 1.2e-31
Identities = 95/323 (29%), Positives = 158/323 (48%)
Query: 8 LEPTLIQVYFEL-PFTFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRAR 63
+ PTL Y + P +F+ + +QA+ K EP+ IQ IP +L KDV A
Sbjct: 9 IRPTLFFEYSGIQPMSFSSLALSADLIQALPK-AITEPSAIQTLVIPAMLTGKDVFALAN 67
Query: 64 TGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVK 123
TGSGKT A+ +P+++++ +T+ Q+ ALVL P++EL Q+ + + + +
Sbjct: 68 TGSGKTLAYGLPLLERL----KTSPEQQ--ALVLVPTRELAMQVSEVLTHVGTALGLNTL 121
Query: 124 CVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSF 183
C + VD + Q+ L E P+I+VAT R L L L L + + +++DEAD +
Sbjct: 122 C--LCGGVDKTEQQNALAENPNILVATTGR-LFDLTQSGLRL-NRVTTLVLDEADRLLDM 177
Query: 184 GYEDDMKAVLKFLPKLYQAILASATLSEDVLSLK-HLILRNPVILKLE-EPAIAPVSQLA 241
G+ ++A+ + Q ++ SAT S+D L LK ++R P + E +I Q
Sbjct: 178 GFWPQVQALASQTAGVRQTVMCSATFSDD-LKLKAQQLMRAPTQVSANPENSINQAVQET 236
Query: 242 HYHILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELP 301
Y L + K L LLK + + ++F+ + L L + I VL+ +
Sbjct: 237 LY--LVNKGSKTQALVALLKQHQWP-QVLVFIGAKENADSLTKKLNKAGIVATVLHGDKS 293
Query: 302 AKARCHAVYQFNQGLYDVIIASD 324
R A+ +F G V+IA+D
Sbjct: 294 QSEREAALAEFKNGTTQVLIATD 316
Score = 128 (50.1 bits), Expect = 1.2e-31, Sum P(2) = 1.2e-31
Identities = 28/69 (40%), Positives = 39/69 (56%)
Query: 349 VSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALS 408
++RGI + + VINF+ P+ + Y+HR GRTAR G ALS V E D +N L+
Sbjct: 318 LARGIHIELLPVVINFELPMHAETYVHRVGRTARAGQHGIALSLVCHGEMDALNATRTLT 377
Query: 409 FVSLREQDL 417
L Q+L
Sbjct: 378 QRELPVQNL 386
>UNIPROTKB|F1N533 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00680000100037 EMBL:DAAA02005160 IPI:IPI00904747
Ensembl:ENSBTAT00000045489 OMA:TENKGES Uniprot:F1N533
Length = 670
Score = 318 (117.0 bits), Expect = 1.3e-31, Sum P(2) = 1.3e-31
Identities = 87/309 (28%), Positives = 157/309 (50%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AI ++G+ T IQ ++I +L+ +D+L A+TGSGKT AF IP ++ I+ LK +
Sbjct: 191 LKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLKFMPR- 249
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T L+LSP++EL Q ++EL + Q+ L +IVVA
Sbjct: 250 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK--LANGINIVVA 307
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H++ + +L+ ++IDEAD + G+E+++K ++K LP Q +L SAT
Sbjct: 308 TPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQ 367
Query: 210 SEDVLSLKHLILRN-PVILKLEEP-AIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
+ V L + L+ P+ + +++ A A V L +++ +++ +L+T LK N +
Sbjct: 368 TRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKK 427
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
+ F + Y +L L + ++ R +QF +++ +D A
Sbjct: 428 LMVFFSSCKSVKYHYEL-LNYIDLPVLAIHGRQKQNKRTTTFFQFCNADSGILLCTDVAA 486
Query: 328 --LETPQIN 334
L+ P+++
Sbjct: 487 RGLDIPEVD 495
Score = 98 (39.6 bits), Expect = 1.3e-31, Sum P(2) = 1.3e-31
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDL 400
+RG+D V ++ +D P D + YIHR GRTARG N G + + LR ++L
Sbjct: 486 ARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLN-GRGHALLILRPEEL 535
>UNIPROTKB|F1MSX0 [details] [associations]
symbol:F1MSX0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
OMA:KDGYRSY GeneTree:ENSGT00680000100037 EMBL:DAAA02009745
IPI:IPI00903923 Ensembl:ENSBTAT00000039166 Uniprot:F1MSX0
Length = 674
Score = 318 (117.0 bits), Expect = 1.3e-31, Sum P(2) = 1.3e-31
Identities = 87/309 (28%), Positives = 157/309 (50%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AI ++G+ T IQ ++I +L+ +D+L A+TGSGKT AF IP ++ I+ LK +
Sbjct: 195 LKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLKFMPR- 253
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T L+LSP++EL Q ++EL + Q+ L +IVVA
Sbjct: 254 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK--LANGINIVVA 311
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H++ + +L+ ++IDEAD + G+E+++K ++K LP Q +L SAT
Sbjct: 312 TPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQ 371
Query: 210 SEDVLSLKHLILRN-PVILKLEEP-AIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
+ V L + L+ P+ + +++ A A V L +++ +++ +L+T LK N +
Sbjct: 372 TRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKK 431
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
+ F + Y +L L + ++ R +QF +++ +D A
Sbjct: 432 LMVFFSSCKSVKYHYEL-LNYIDLPVLAIHGRQKQNKRTTTFFQFCNADSGILLCTDVAA 490
Query: 328 --LETPQIN 334
L+ P+++
Sbjct: 491 RGLDIPEVD 499
Score = 98 (39.6 bits), Expect = 1.3e-31, Sum P(2) = 1.3e-31
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDL 400
+RG+D V ++ +D P D + YIHR GRTARG N G + + LR ++L
Sbjct: 490 ARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLN-GRGHALLILRPEEL 539
>UNIPROTKB|Q9KNA4 [details] [associations]
symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0016070 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT ProtClustDB:CLSK869483
PIR:C82506 RefSeq:NP_232462.1 ProteinModelPortal:Q9KNA4
DNASU:2612119 GeneID:2612119 KEGG:vch:VCA0061 PATRIC:20084709
Uniprot:Q9KNA4
Length = 452
Score = 286 (105.7 bits), Expect = 1.4e-31, Sum P(2) = 1.4e-31
Identities = 84/328 (25%), Positives = 158/328 (48%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ +A + + T IQ++AIPL + +D+L ++TGSGKT AF +PM+ K + K +
Sbjct: 17 LKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHKSLKTKAFS-A 75
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
++ + L+L P++EL Q++ ++ + S + E + V+ L P +VA
Sbjct: 76 KDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKA--LARGPRFIVA 133
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLP-KLYQAILASAT 208
TP R HL ++L L+ LE +++DEAD + G+ +++ + + Q ++ SAT
Sbjct: 134 TPGRLADHLDHRSLFLEG-LETLVLDEADRMLDLGFAKELRRIHNAAKHRRRQTLMFSAT 192
Query: 209 LSE-DVLSLKHLILRNP--VILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLV 265
L DV + +L P + + + ++Q H+++ D K +L +L +
Sbjct: 193 LDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQ--HFYLCDHLDHKEALLDRILA-DAE 249
Query: 266 QGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD- 324
+ IIF T +L L Q + L+ L R + QF + ++ +++ +D
Sbjct: 250 YRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFERAVFKILVTTDV 309
Query: 325 -EKALETPQINSTNNRKRKRDKESGVSR 351
+ L+ P + N + E V R
Sbjct: 310 ASRGLDIPAVTHVINFDMPKHTEEYVHR 337
Score = 122 (48.0 bits), Expect = 1.4e-31, Sum P(2) = 1.4e-31
Identities = 23/48 (47%), Positives = 32/48 (66%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLRE 397
SRG+D V++VINFD P + Y+HR GRT R N+G A+S V ++
Sbjct: 311 SRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKD 358
>TIGR_CMR|VC_A0061 [details] [associations]
symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT
ProtClustDB:CLSK869483 PIR:C82506 RefSeq:NP_232462.1
ProteinModelPortal:Q9KNA4 DNASU:2612119 GeneID:2612119
KEGG:vch:VCA0061 PATRIC:20084709 Uniprot:Q9KNA4
Length = 452
Score = 286 (105.7 bits), Expect = 1.4e-31, Sum P(2) = 1.4e-31
Identities = 84/328 (25%), Positives = 158/328 (48%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ +A + + T IQ++AIPL + +D+L ++TGSGKT AF +PM+ K + K +
Sbjct: 17 LKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHKSLKTKAFS-A 75
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
++ + L+L P++EL Q++ ++ + S + E + V+ L P +VA
Sbjct: 76 KDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKA--LARGPRFIVA 133
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLP-KLYQAILASAT 208
TP R HL ++L L+ LE +++DEAD + G+ +++ + + Q ++ SAT
Sbjct: 134 TPGRLADHLDHRSLFLEG-LETLVLDEADRMLDLGFAKELRRIHNAAKHRRRQTLMFSAT 192
Query: 209 LSE-DVLSLKHLILRNP--VILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLV 265
L DV + +L P + + + ++Q H+++ D K +L +L +
Sbjct: 193 LDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQ--HFYLCDHLDHKEALLDRILA-DAE 249
Query: 266 QGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD- 324
+ IIF T +L L Q + L+ L R + QF + ++ +++ +D
Sbjct: 250 YRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFERAVFKILVTTDV 309
Query: 325 -EKALETPQINSTNNRKRKRDKESGVSR 351
+ L+ P + N + E V R
Sbjct: 310 ASRGLDIPAVTHVINFDMPKHTEEYVHR 337
Score = 122 (48.0 bits), Expect = 1.4e-31, Sum P(2) = 1.4e-31
Identities = 23/48 (47%), Positives = 32/48 (66%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLRE 397
SRG+D V++VINFD P + Y+HR GRT R N+G A+S V ++
Sbjct: 311 SRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKD 358
>SGD|S000001107 [details] [associations]
symbol:RRP3 "Protein involved in rRNA processing"
species:4932 "Saccharomyces cerevisiae" [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000462 "maturation of
SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IC] [GO:0006364 "rRNA processing"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000001107 GO:GO:0005524
GO:GO:0005730 EMBL:BK006934 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:U00061 HOGENOM:HOG000268802
GO:GO:0000462 GeneTree:ENSGT00670000098028 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P EMBL:AY389302 EMBL:AY389303 PIR:S46713
RefSeq:NP_011932.2 ProteinModelPortal:P38712 SMR:P38712
DIP:DIP-6533N IntAct:P38712 MINT:MINT-518716 STRING:P38712
PaxDb:P38712 PeptideAtlas:P38712 EnsemblFungi:YHR065C GeneID:856462
KEGG:sce:YHR065C CYGD:YHR065c NextBio:982111 Genevestigator:P38712
GermOnline:YHR065C Uniprot:P38712
Length = 501
Score = 289 (106.8 bits), Expect = 1.8e-31, Sum P(2) = 1.8e-31
Identities = 92/327 (28%), Positives = 157/327 (48%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
+QA L + +PT IQ +AIP L+ D++ A+TGSGKT AFAIP++ ++ + ++
Sbjct: 93 IQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLWHDQEPYY- 151
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
A +L+P++EL Q+ + L V+ I +++ Q L+ +P I++A
Sbjct: 152 ----ACILAPTRELAQQIKETFDSLGSLMG--VRSTCIVGGMNMMDQARDLMRKPHIIIA 205
Query: 150 TPARALAHLK-AKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAI-LASA 207
TP R + HL+ K L+ L+ +++DEAD + + + +LK +P + L SA
Sbjct: 206 TPGRLMDHLENTKGFSLRK-LKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTTYLFSA 264
Query: 208 TLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
T++ + L+ L NPV + V L ++ K T Y + LN G
Sbjct: 265 TMTSKIDKLQRASLTNPVKCAVSNK-YQTVDTLVQTLMVVPGGLKNT--YLIYLLNEFIG 321
Query: 268 KT-IIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
KT IIF T +L + S L+ +L R ++ F G +++A+D
Sbjct: 322 KTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGSLDLFKAGKRSILVATDVA 381
Query: 327 A--LETPQINSTNNRKRKRDKESGVSR 351
A L+ P ++ N D +S + R
Sbjct: 382 ARGLDIPSVDIVVNYDIPVDSKSYIHR 408
Score = 122 (48.0 bits), Expect = 1.8e-31, Sum P(2) = 1.8e-31
Identities = 23/52 (44%), Positives = 34/52 (65%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLM 401
+RG+D V V+N+D P+D + YIHR GRTAR G ++S VS + +L+
Sbjct: 382 ARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELI 433
>UNIPROTKB|Q8NHQ9 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P26196 CTD:57696
HOGENOM:HOG000268803 HOVERGEN:HBG107796 KO:K14809 OrthoDB:EOG4WH8KN
OMA:CACVEYW EMBL:AC055713 EMBL:AC117503 EMBL:BC030020 EMBL:AL833756
EMBL:AB046815 IPI:IPI00185361 RefSeq:NP_065987.1 UniGene:Hs.286173
ProteinModelPortal:Q8NHQ9 SMR:Q8NHQ9 STRING:Q8NHQ9
PhosphoSite:Q8NHQ9 DMDM:296439376 PaxDb:Q8NHQ9 PRIDE:Q8NHQ9
Ensembl:ENST00000238146 GeneID:57696 KEGG:hsa:57696 UCSC:uc001ufi.3
GeneCards:GC12P124086 HGNC:HGNC:20085 neXtProt:NX_Q8NHQ9
PharmGKB:PA134984021 InParanoid:Q8NHQ9 ChiTaRS:DDX55
GenomeRNAi:57696 NextBio:64547 ArrayExpress:Q8NHQ9 Bgee:Q8NHQ9
CleanEx:HS_DDX55 Genevestigator:Q8NHQ9 GermOnline:ENSG00000111364
Uniprot:Q8NHQ9
Length = 600
Score = 364 (133.2 bits), Expect = 2.1e-31, P = 2.1e-31
Identities = 112/385 (29%), Positives = 202/385 (52%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L A+ +LG+ T +Q IPL ++NKDV A TGSGKT AF IP+++ ++ ++ +
Sbjct: 21 LGALRELGFPYMTPVQSATIPLFMRNKDVAAEAVTGSGKTLAFVIPILEILLRREEKLKK 80
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ A++++P++EL Q+ + + T + + I + E + +I+VA
Sbjct: 81 SQVGAIIITPTRELAIQIDEVLSHFTKHFPEFSQILWIGGRNPGEDVERFKQQGGNIIVA 140
Query: 150 TPARA--LAHLKAKTLDLKS---SLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAIL 204
TP R + KA+ LDL S SL+++++DEAD + G+E + +L+FLPK + L
Sbjct: 141 TPGRLEDMFRRKAEGLDLASCVRSLDVLVLDEADRLLDMGFEASINTILEFLPKQRRTGL 200
Query: 205 ASATLSEDVLSLKHLILRNPVILKLEEPAIAPVS------QLAHYHILAQEDEKATILYT 258
SAT +++V +L LRNPV + ++E +A S +L +Y+++ + DEK L
Sbjct: 201 FSATQTQEVENLVRAGLRNPVRVSVKEKGVAASSAQKTPSRLENYYMVCKADEKFNQLVH 260
Query: 259 LLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARC-HAVYQFNQGLY 317
L+ N Q K ++F +T C ++ Y + ++ ++ K C H ++ +
Sbjct: 261 FLR-NHKQEKHLVFFST---CACVEYYGKALEV---LVKG---VKIMCIHGKMKYKRNK- 309
Query: 318 DVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRA 377
I + + L++ + T+ ++RGID V+ V+ +D P + ++HR
Sbjct: 310 ---IFMEFRKLQSGILVCTDV----------MARGIDIPEVNWVLQYDPPSNASAFVHRC 356
Query: 378 GRTARGKNQGTALSFVSLREQDLMN 402
GRTAR + G+AL F+ E+ +N
Sbjct: 357 GRTARIGHGGSALVFLLPMEESYIN 381
>TAIR|locus:2050715 [details] [associations]
symbol:AT2G45810 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005829
"cytosol" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006417 GO:GO:0006397
GO:GO:0003723 GO:GO:0000932 GO:GO:0051028 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC004665 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 KO:K12614 InterPro:IPR014014
PROSITE:PS51195 OMA:HIDPARF ProtClustDB:CLSN2683443 EMBL:AY039862
EMBL:BT002709 EMBL:AJ010459 IPI:IPI00528597 PIR:T02466 PIR:T51740
RefSeq:NP_182105.1 UniGene:At.46 ProteinModelPortal:Q94BV4
SMR:Q94BV4 IntAct:Q94BV4 STRING:Q94BV4 PaxDb:Q94BV4 PRIDE:Q94BV4
EnsemblPlants:AT2G45810.1 GeneID:819189 KEGG:ath:AT2G45810
GeneFarm:917 TAIR:At2g45810 InParanoid:Q94BV4 PhylomeDB:Q94BV4
Genevestigator:Q94BV4 GermOnline:AT2G45810 Uniprot:Q94BV4
Length = 528
Score = 297 (109.6 bits), Expect = 2.6e-31, Sum P(2) = 2.6e-31
Identities = 91/326 (27%), Positives = 161/326 (49%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ I + G+ +P+ IQE +IP+ L D+L RA+ G+GKTGAF IP ++KI Q
Sbjct: 166 LRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEKIDPENNVIQ- 224
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
A++L P++EL Q + +EL+ +V + + L + ++V
Sbjct: 225 ----AVILVPTRELALQTSQVCKELSKYLKIEVMVTTGGTSLRDDIMR--LYQPVHLLVG 278
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L K LK ++++DEAD + S ++ ++ +++FLP+ Q ++ SAT
Sbjct: 279 TPGRILDLAKKGVCVLKDCA-MLVMDEADKLLSVEFQPSIEELIQFLPESRQILMFSATF 337
Query: 210 SEDVLSLKHLILRNPVILKL-EEPAIAPVSQLAHYHILAQEDEKATILYTLL-KLNLVQG 267
V S K L+ P I+ L ++ + V+Q Y+ +E +K L TL KL + Q
Sbjct: 338 PVTVKSFKDRYLKKPYIINLMDQLTLMGVTQ---YYAFVEERQKVHCLNTLFSKLQINQ- 393
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD--E 325
+IIF N+V++ L + + S +++++ R + F G ++ +D
Sbjct: 394 -SIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHDFRNGACRNLVCTDLFT 452
Query: 326 KALETPQINSTNNRKRKRDKESGVSR 351
+ ++ +N N R ES + R
Sbjct: 453 RGIDIQAVNVVINFDFPRTSESYLHR 478
Score = 113 (44.8 bits), Expect = 2.6e-31, Sum P(2) = 2.6e-31
Identities = 22/49 (44%), Positives = 33/49 (67%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQ 398
+RGID Q V+ VINFDFP + Y+HR GR+ R + G A++ V+ ++
Sbjct: 452 TRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDR 500
>UNIPROTKB|F1P0I3 [details] [associations]
symbol:DDX10 "Probable ATP-dependent RNA helicase DDX10"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 GeneTree:ENSGT00550000074980 IPI:IPI00595697
OMA:ADKVIEP EMBL:AADN02005060 Ensembl:ENSGALT00000027709
Uniprot:F1P0I3
Length = 875
Score = 304 (112.1 bits), Expect = 2.6e-31, Sum P(2) = 2.6e-31
Identities = 84/297 (28%), Positives = 152/297 (51%)
Query: 42 TLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSK 101
T IQ + I L LQ KDVL A+TGSGKT AF +P ++ + L+ T+ L++SP++
Sbjct: 97 TEIQRQTIGLALQGKDVLGAAKTGSGKTLAFIVPALELLYRLQWTS-ADGLGVLIISPTR 155
Query: 102 ELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAK 161
EL Q K ++++ + D I D+ +E + ++++ TP R L H+
Sbjct: 156 ELAFQTFKVLRKVGK--NHDFSAGLIIGGKDLK-EESERIHHINMLICTPGRLLQHMDET 212
Query: 162 TLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLIL 221
+ S L+++I+DEAD + G+ D M A+++ LPK Q +L SAT ++ V L L L
Sbjct: 213 SYFYASDLQMLILDEADRILDMGFADTMNAIIENLPKKRQTLLFSATQTKSVKDLARLSL 272
Query: 222 RNPVILKLEEPA-IAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCY 280
++P + + E A + + L +I+ + K +LY+ L+ +L + + F + + Y
Sbjct: 273 KDPEYVWVHEKAKFSTPATLDQNYIVCELQHKINVLYSFLRSHLKKKSIVFFASCKEVQY 332
Query: 281 KLKLYLE-QFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD--EKALETPQIN 334
+++ + Q + L+ + R F + V+ A+D + L+ P +N
Sbjct: 333 LFRVFCKLQPGLPVLALHGKQQQMKRMEVYTCFVRKKAAVLFATDIAARGLDFPAVN 389
Score = 116 (45.9 bits), Expect = 2.6e-31, Sum P(2) = 2.6e-31
Identities = 32/87 (36%), Positives = 45/87 (51%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSF 409
+RG+DF V+ VI FD P D YIHR GRTAR K G AL + E+ M + A
Sbjct: 380 ARGLDFPAVNWVIQFDCPEDANTYIHRVGRTARYKEGGEALLVLLPSEEKGMVEQLAQRK 439
Query: 410 VSLRE----QDLMNDVNEYLMTNLHED 432
V + E + + D+ + + L +D
Sbjct: 440 VPVNEIKINPEKITDIQKRMQAFLAQD 466
>UNIPROTKB|Q5ZJF6 [details] [associations]
symbol:DDX10 "Probable ATP-dependent RNA helicase DDX10"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
EMBL:AJ720478 IPI:IPI00595697 RefSeq:NP_001073193.1
UniGene:Gga.15096 HSSP:P26196 ProteinModelPortal:Q5ZJF6 SMR:Q5ZJF6
STRING:Q5ZJF6 GeneID:418965 KEGG:gga:418965 CTD:1662
HOVERGEN:HBG102756 InParanoid:Q5ZJF6 OrthoDB:EOG4BK536
NextBio:20822084 Uniprot:Q5ZJF6
Length = 875
Score = 304 (112.1 bits), Expect = 2.6e-31, Sum P(2) = 2.6e-31
Identities = 84/297 (28%), Positives = 152/297 (51%)
Query: 42 TLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSK 101
T IQ + I L LQ KDVL A+TGSGKT AF +P ++ + L+ T+ L++SP++
Sbjct: 97 TEIQRQTIGLALQGKDVLGAAKTGSGKTLAFIVPALELLYRLQWTS-ADGLGVLIISPTR 155
Query: 102 ELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAK 161
EL Q K ++++ + D I D+ +E + ++++ TP R L H+
Sbjct: 156 ELAFQTFKVLRKVGK--NHDFSAGLIIGGKDLK-EESERIHHINMLICTPGRLLQHMDET 212
Query: 162 TLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLIL 221
+ S L+++I+DEAD + G+ D M A+++ LPK Q +L SAT ++ V L L L
Sbjct: 213 SYFYASDLQMLILDEADRILDMGFADTMNAIIENLPKKRQTLLFSATQTKSVKDLARLSL 272
Query: 222 RNPVILKLEEPA-IAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCY 280
++P + + E A + + L +I+ + K +LY+ L+ +L + + F + + Y
Sbjct: 273 KDPEYVWVHEKAKFSTPATLDQNYIVCELQHKINVLYSFLRSHLKKKSIVFFASCKEVQY 332
Query: 281 KLKLYLE-QFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD--EKALETPQIN 334
+++ + Q + L+ + R F + V+ A+D + L+ P +N
Sbjct: 333 LFRVFCKLQPGLPVLALHGKQQQMKRMEVYTCFVRKKAAVLFATDIAARGLDFPAVN 389
Score = 116 (45.9 bits), Expect = 2.6e-31, Sum P(2) = 2.6e-31
Identities = 32/87 (36%), Positives = 45/87 (51%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSF 409
+RG+DF V+ VI FD P D YIHR GRTAR K G AL + E+ M + A
Sbjct: 380 ARGLDFPAVNWVIQFDCPEDANTYIHRVGRTARYKEGGEALLVLLPSEEKGMVEQLAQRK 439
Query: 410 VSLRE----QDLMNDVNEYLMTNLHED 432
V + E + + D+ + + L +D
Sbjct: 440 VPVNEIKINPEKITDIQKRMQAFLAQD 466
>TAIR|locus:2098886 [details] [associations]
symbol:AT3G61240 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005829
"cytosol" evidence=RCA] [GO:0009165 "nucleotide biosynthetic
process" evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006417 GO:GO:0006397 GO:GO:0003723
EMBL:AL137898 GO:GO:0000932 GO:GO:0051028 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
EMBL:AJ010464 EMBL:AY120712 EMBL:BT000038 IPI:IPI00548726
PIR:T47916 PIR:T51743 RefSeq:NP_191683.1 RefSeq:NP_974472.1
UniGene:At.20236 ProteinModelPortal:Q9M2E0 SMR:Q9M2E0 STRING:Q9M2E0
PaxDb:Q9M2E0 PRIDE:Q9M2E0 EnsemblPlants:AT3G61240.1
EnsemblPlants:AT3G61240.2 GeneID:825296 KEGG:ath:AT3G61240
GeneFarm:928 TAIR:At3g61240 InParanoid:Q9M2E0 OMA:PLAMDQR
PhylomeDB:Q9M2E0 ProtClustDB:CLSN2683443 Genevestigator:Q9M2E0
GermOnline:AT3G61240 Uniprot:Q9M2E0
Length = 498
Score = 295 (108.9 bits), Expect = 2.7e-31, Sum P(2) = 2.7e-31
Identities = 91/328 (27%), Positives = 168/328 (51%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ I + G+ +P+ IQE +IP+ L D+L RA+ G+GKTGAF IP+++KI Q
Sbjct: 136 LKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQ- 194
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLL-VERP-DIV 147
A++L P++EL Q + +EL+ + V S+++ ++ + +P ++
Sbjct: 195 ----AMILVPTRELALQTSQVCKELSKYLNIQVMVTTGG----TSLRDDIMRLHQPVHLL 246
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
V TP R L K LK ++++DEAD + S ++ ++ +++FLP+ Q ++ SA
Sbjct: 247 VGTPGRILDLTKKGVCVLKDCA-MLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLMFSA 305
Query: 208 TLSEDVLSLKHLILRNPVILKL-EEPAIAPVSQLAHYHILAQEDEKATILYTLL-KLNLV 265
T V + K LR P ++ L ++ + V+Q Y+ +E +K L TL KL +
Sbjct: 306 TFPVTVKAFKDRHLRKPYVINLMDQLTLMGVTQ---YYAFVEERQKVHCLNTLFSKLQIN 362
Query: 266 QGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD- 324
Q +IIF N+V++ L + + S +++++ R ++F G ++ +D
Sbjct: 363 Q--SIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVCTDL 420
Query: 325 -EKALETPQINSTNNRKRKRDKESGVSR 351
+ ++ +N N R ES + R
Sbjct: 421 FTRGIDIQAVNVVINFDFPRTSESYLHR 448
Score = 113 (44.8 bits), Expect = 2.7e-31, Sum P(2) = 2.7e-31
Identities = 22/49 (44%), Positives = 33/49 (67%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQ 398
+RGID Q V+ VINFDFP + Y+HR GR+ R + G A++ V+ ++
Sbjct: 422 TRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDR 470
>ZFIN|ZDB-GENE-030131-9685 [details] [associations]
symbol:ddx18 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 18" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0030099 "myeloid
cell differentiation" evidence=IMP] [GO:0030097 "hemopoiesis"
evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-9685
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0030099 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 KO:K13179 CTD:8886
HOVERGEN:HBG105702 EMBL:AY648748 IPI:IPI00492099
RefSeq:NP_001003411.1 UniGene:Dr.24235 ProteinModelPortal:Q6DRL1
STRING:Q6DRL1 PRIDE:Q6DRL1 GeneID:321127 KEGG:dre:321127
InParanoid:Q6DRL1 NextBio:20807243 ArrayExpress:Q6DRL1 Bgee:Q6DRL1
Uniprot:Q6DRL1
Length = 653
Score = 313 (115.2 bits), Expect = 2.8e-31, Sum P(2) = 2.8e-31
Identities = 89/312 (28%), Positives = 161/312 (51%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ + ++G+ T IQ + I +L+ +DVL A+TGSGKT AF IP I+ I LK +
Sbjct: 173 LKGVKEMGFDTMTEIQHKTIRPLLEGRDVLAAAKTGSGKTLAFLIPSIELIYKLKFMPR- 231
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T +VLSP++EL Q + ++EL + Q+ L +I+VA
Sbjct: 232 NGTGVIVLSPTRELAMQTYGVLKELMTHHVHTYGLIMGGSNRSAEAQK--LANGVNILVA 289
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L HL+ + +L+ +IIDEAD + G+E+++K ++K LPK Q++L SAT
Sbjct: 290 TPGRLLDHLQNTPGFMFKNLQCLIIDEADRILEVGFEEELKQIIKLLPKKRQSMLFSATQ 349
Query: 210 SEDVLSLKHLILRN-PVILKLEEPA-IAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
+ V L + L+ P+ + +++ A V L +++ +++ +L+T LK N +
Sbjct: 350 TRKVEDLARISLKKEPLYVGVDDNKDTATVEGLEQGYVVCPSEKRFLLLFTFLKKNRKK- 408
Query: 268 KTIIFVNTVDKCYKLKLYLEQFK---ISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
K ++F ++ C +K + E + ++ + R +QF +++ +D
Sbjct: 409 KLMVFFSS---CMSVKFHYELLNYIDLPVMAIHGKQKQTKRTTTFFQFCNADSGILLCTD 465
Query: 325 EKA--LETPQIN 334
A L+ P+++
Sbjct: 466 VAARGLDIPEVD 477
Score = 100 (40.3 bits), Expect = 2.8e-31, Sum P(2) = 2.8e-31
Identities = 23/51 (45%), Positives = 32/51 (62%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDL 400
+RG+D V ++ FD P D + YIHR GRTARG N G + + LR ++L
Sbjct: 468 ARGLDIPEVDWIVQFDPPDDPKEYIHRVGRTARGIN-GRGHALLILRPEEL 517
>RGD|2324094 [details] [associations]
symbol:Ddx55 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 55"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:2324094
GO:GO:0005524 GO:GO:0003723 EMBL:CH473973 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 CTD:57696 KO:K14809
OrthoDB:EOG4WH8KN GeneTree:ENSGT00550000074969 IPI:IPI00370890
RefSeq:NP_001258255.1 UniGene:Rn.209289 Ensembl:ENSRNOT00000001387
GeneID:100362764 KEGG:rno:100362764 UCSC:RGD:2324094 Uniprot:D3ZX56
Length = 600
Score = 363 (132.8 bits), Expect = 2.8e-31, P = 2.8e-31
Identities = 119/411 (28%), Positives = 210/411 (51%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L A+ +LG+L T +Q IPL ++NKDV A TGSGKT AF IP+++ ++ ++ +
Sbjct: 21 LGALRELGFLHMTPVQSATIPLFMRNKDVAAEAVTGSGKTLAFVIPILEILLRREEKLKK 80
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ A+V++P++EL Q+ + + T + + + I + E +I+VA
Sbjct: 81 NQVGAIVITPTRELAIQIDEVLSHFTKHFPQFSQILWIGGRNPGEDVERFKQHGGNIIVA 140
Query: 150 TPARA--LAHLKAKTLDLKS---SLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAIL 204
TP R + KA+ LDL S SL+++++DEAD + G+E + +L+FLPK + L
Sbjct: 141 TPGRLEDMFRRKAEGLDLASYVKSLDVLVLDEADRLLDMGFEASINTILEFLPKQRRTGL 200
Query: 205 ASATLSEDVLSLKHLILRNPVILKLEEPAIAPVS------QLAHYHILAQEDEKATILYT 258
SAT +++V +L LRNPV + ++E +A S +L +++++ + DEK L
Sbjct: 201 FSATQTQEVENLVRAGLRNPVRISVKEKGVAASSTQKTPSRLENHYMICKADEKFNQLVH 260
Query: 259 LLKLNLVQGKTIIFVNT---VDKCYK-LKLYLEQFKISTCVLNSELPAKARCHAVYQFNQ 314
L+ + Q K ++F +T V+ K L+ +++ KI C+ + ++ K R +F +
Sbjct: 261 FLR-SRQQEKHLVFFSTCACVEYYGKALEALVQRVKI-LCI-HGKMKYK-RNKIFMEFRK 316
Query: 315 GLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYI 374
+++ +D A RGID V+ V+ +D P + ++
Sbjct: 317 LQSGILVCTDVMA-----------------------RGIDIPEVNWVLQYDPPSNASAFV 353
Query: 375 HRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYL 425
HR GRTAR + G+AL F+ E+ +N L+E L + + L
Sbjct: 354 HRCGRTARIGHGGSALVFLLPMEEAYINFLAINQKCPLQEMSLQRNTVDLL 404
>UNIPROTKB|I3L840 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00680000100037 EMBL:CU406995
Ensembl:ENSSSCT00000025310 Uniprot:I3L840
Length = 667
Score = 315 (115.9 bits), Expect = 3.0e-31, Sum P(2) = 3.0e-31
Identities = 86/309 (27%), Positives = 157/309 (50%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AI ++G+ T IQ ++I +L+ +D+L A+TGSGKT AF IP ++ I+ L+ +
Sbjct: 188 LRAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPR- 246
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T L+LSP++EL Q ++EL + Q+ L +IVVA
Sbjct: 247 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK--LANGINIVVA 304
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H++ + +L+ ++IDEAD + G+E+++K ++K LP Q +L SAT
Sbjct: 305 TPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQ 364
Query: 210 SEDVLSLKHLILRN-PVILKLEEP-AIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
+ V L + L+ P+ + +++ A A V L +++ +++ +L+T LK N +
Sbjct: 365 TRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKK 424
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
+ F + Y +L L + ++ R +QF +++ +D A
Sbjct: 425 LMVFFSSCKSVKYHYEL-LNYIDLPVLAIHGRQKQNKRTTTFFQFCNADSGILLCTDVAA 483
Query: 328 --LETPQIN 334
L+ P+++
Sbjct: 484 RGLDIPEVD 492
Score = 98 (39.6 bits), Expect = 3.0e-31, Sum P(2) = 3.0e-31
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDL 400
+RG+D V ++ +D P D + YIHR GRTARG N G + + LR ++L
Sbjct: 483 ARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLN-GRGHALLILRPEEL 532
>UNIPROTKB|F1RY13 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
OMA:KDGYRSY GeneTree:ENSGT00680000100037 EMBL:CU406995
Ensembl:ENSSSCT00000017112 Uniprot:F1RY13
Length = 671
Score = 315 (115.9 bits), Expect = 3.1e-31, Sum P(2) = 3.1e-31
Identities = 86/309 (27%), Positives = 157/309 (50%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AI ++G+ T IQ ++I +L+ +D+L A+TGSGKT AF IP ++ I+ L+ +
Sbjct: 192 LRAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPR- 250
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T L+LSP++EL Q ++EL + Q+ L +IVVA
Sbjct: 251 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK--LANGINIVVA 308
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H++ + +L+ ++IDEAD + G+E+++K ++K LP Q +L SAT
Sbjct: 309 TPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQ 368
Query: 210 SEDVLSLKHLILRN-PVILKLEEP-AIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
+ V L + L+ P+ + +++ A A V L +++ +++ +L+T LK N +
Sbjct: 369 TRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKK 428
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
+ F + Y +L L + ++ R +QF +++ +D A
Sbjct: 429 LMVFFSSCKSVKYHYEL-LNYIDLPVLAIHGRQKQNKRTTTFFQFCNADSGILLCTDVAA 487
Query: 328 --LETPQIN 334
L+ P+++
Sbjct: 488 RGLDIPEVD 496
Score = 98 (39.6 bits), Expect = 3.1e-31, Sum P(2) = 3.1e-31
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDL 400
+RG+D V ++ +D P D + YIHR GRTARG N G + + LR ++L
Sbjct: 487 ARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLN-GRGHALLILRPEEL 536
>UNIPROTKB|E2RFA3 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 KO:K13179 OMA:KDGYRSY GeneTree:ENSGT00680000100037
CTD:8886 EMBL:AAEX03011884 RefSeq:XP_533327.3
Ensembl:ENSCAFT00000007958 GeneID:476120 KEGG:cfa:476120
Uniprot:E2RFA3
Length = 669
Score = 319 (117.4 bits), Expect = 3.2e-31, Sum P(2) = 3.2e-31
Identities = 87/309 (28%), Positives = 158/309 (51%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AI ++G+ T IQ ++I +L+ +D+L A+TGSGKT AF IP ++ I+ LK +
Sbjct: 190 LKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLKFMPR- 248
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T L+LSP++EL Q ++EL M + Q+ L +I+VA
Sbjct: 249 NGTGVLILSPTRELAMQTFGVLKELMMYHVHTYGLIMGGSNRSAEAQK--LGNGINIIVA 306
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H++ + +L+ ++IDEAD + G+E+++K ++K LP Q +L SAT
Sbjct: 307 TPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQ 366
Query: 210 SEDVLSLKHLILRN-PVILKLEEP-AIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
+ V L + L+ P+ + +++ A A V L +++ +++ +L+T LK N +
Sbjct: 367 TRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKK 426
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
+ F + Y +L L + ++ R +QF +++ +D A
Sbjct: 427 LMVFFSSCKSVKYHYEL-LNYIDLPVLAIHGRQKQNKRTTTFFQFCNADSGILLCTDVAA 485
Query: 328 --LETPQIN 334
L+ P+++
Sbjct: 486 RGLDIPEVD 494
Score = 93 (37.8 bits), Expect = 3.2e-31, Sum P(2) = 3.2e-31
Identities = 21/42 (50%), Positives = 28/42 (66%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKN-QGTAL 390
+RG+D V ++ +D P D + YIHR GRTARG N +G AL
Sbjct: 485 ARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHAL 526
>UNIPROTKB|A4RGU2 [details] [associations]
symbol:DBP4 "ATP-dependent RNA helicase DBP4"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 GO:GO:0043581 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CM001232 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
InterPro:IPR025313 Pfam:PF13959 OrthoDB:EOG4R53B0
RefSeq:XP_003715000.1 ProteinModelPortal:A4RGU2 STRING:A4RGU2
EnsemblFungi:MGG_08049T0 GeneID:2678339 KEGG:mgr:MGG_08049
Uniprot:A4RGU2
Length = 798
Score = 307 (113.1 bits), Expect = 3.4e-31, Sum P(2) = 3.4e-31
Identities = 79/236 (33%), Positives = 135/236 (57%)
Query: 42 TLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSK 101
T IQ RAIPL L+ +D+L A+TGSGKT AF +P+++K+ +Q Q + ALVLSP++
Sbjct: 73 TDIQARAIPLALKGRDILGAAKTGSGKTLAFLVPLLEKLYR-EQWTQEAKLGALVLSPTR 131
Query: 102 ELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHL-KA 160
EL Q + ++++ V + V +E + R +I++ TP R L HL +
Sbjct: 132 ELAVQTFQVLRKIGRHHLFSAGLVIGGKSVR---EEAEALSRMNILIGTPGRILQHLDQT 188
Query: 161 KTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLI 220
D+ +L+++++DEAD + G++ D+ A+++ LP Q +L SAT S+ V L L
Sbjct: 189 HGFDV-DNLQLLVLDEADRIMDLGFQRDVDALVQHLPTTRQTLLFSATQSKKVSDLARLS 247
Query: 221 LRNPVILKLE-EPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTIIFVNT 275
L++P + + E A S L ++I+ EK L+ +K NL + K ++F+++
Sbjct: 248 LKDPEYVSVHAEATTATPSTLQQHYIVTPLPEKLDTLWGFIKANL-KSKMVVFLSS 302
Score = 110 (43.8 bits), Expect = 3.4e-31, Sum P(2) = 3.4e-31
Identities = 23/50 (46%), Positives = 31/50 (62%)
Query: 349 VSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQ 398
++RGIDF V V+ D P D YIHR GRTAR + +G A+ F+ E+
Sbjct: 355 IARGIDFTGVDWVVQVDAPEDTDDYIHRVGRTARYEREGKAVIFLDPSEE 404
>TAIR|locus:2008296 [details] [associations]
symbol:AT1G51380 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009560
"embryo sac egg cell differentiation" evidence=RCA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0005730 EMBL:AC024261
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 EMBL:AC006085 KO:K13025
EMBL:AY058890 EMBL:AY079046 IPI:IPI00529522 PIR:H96551
RefSeq:NP_175549.1 UniGene:At.11244 ProteinModelPortal:Q9C8J1
SMR:Q9C8J1 PaxDb:Q9C8J1 PRIDE:Q9C8J1 EnsemblPlants:AT1G51380.1
GeneID:841562 KEGG:ath:AT1G51380 GeneFarm:1010 TAIR:At1g51380
InParanoid:Q9C8J1 OMA:DITNITH PhylomeDB:Q9C8J1
ProtClustDB:CLSN2912843 Genevestigator:Q9C8J1 GermOnline:AT1G51380
Uniprot:Q9C8J1
Length = 392
Score = 275 (101.9 bits), Expect = 3.5e-31, Sum P(2) = 3.5e-31
Identities = 89/301 (29%), Positives = 158/301 (52%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ + G+ +P+ IQ+RA+ IL+ +DV+ +A++G+GKT AI + Q I+N+
Sbjct: 34 LRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISVCQ-IVNISS---- 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVK-CVDISEQVDVSVQEPLLVERP-DIV 147
++ + LVLSPS+EL +Q K IQ + + C+ + + +++ +ER V
Sbjct: 89 RKVQVLVLSPSRELASQTEKTIQAIGAHTNIQAHACIG-GKSIGEDIKK---LERGVHAV 144
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
TP R +K +L K+ ++++++DE+D + S G +D + V + LP Q L SA
Sbjct: 145 SGTPGRVYDMIKRGSLQTKA-VKLLVLDESDEMLSKGLKDQIYDVYRALPHDIQVCLISA 203
Query: 208 TLSEDVLSLKHLILRNPV--ILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLV 265
TL +++L + + +PV ++K +E + + Q +Y + +E+ K L L L
Sbjct: 204 TLPQEILEMTEKFMTDPVRILVKPDELTLEGIKQ--YYVDVDKEEWKFDTLCDLYG-RLT 260
Query: 266 QGKTIIFVNTVDKCYKL--KLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIAS 323
+ IIF NT K L K+ F +S+ ++ + K R + QF V+IAS
Sbjct: 261 INQAIIFCNTRQKVDWLTEKMRSSNFIVSS--MHGDKRQKERDDIMNQFRSFKSRVLIAS 318
Query: 324 D 324
D
Sbjct: 319 D 319
Score = 120 (47.3 bits), Expect = 3.5e-31, Sum P(2) = 3.5e-31
Identities = 24/54 (44%), Positives = 34/54 (62%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND 403
+RGID Q VS+VIN+D P + + YIHR GR R +G A++FV + + D
Sbjct: 322 ARGIDVQTVSHVINYDIPNNPELYIHRIGRAGRFGREGVAINFVKSSDMKDLKD 375
Score = 40 (19.1 bits), Expect = 8.2e-23, Sum P(2) = 8.2e-23
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 403 DGTALSFVSLREQDLMNDVNEYLMTNLHE 431
+G A++FV + + D+ + T + E
Sbjct: 358 EGVAINFVKSSDMKDLKDIERHYGTKIRE 386
>UNIPROTKB|I3L7B7 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00680000100037 EMBL:CU406995
Ensembl:ENSSSCT00000025125 Uniprot:I3L7B7
Length = 696
Score = 315 (115.9 bits), Expect = 3.7e-31, Sum P(2) = 3.7e-31
Identities = 86/309 (27%), Positives = 157/309 (50%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AI ++G+ T IQ ++I +L+ +D+L A+TGSGKT AF IP ++ I+ L+ +
Sbjct: 217 LRAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPR- 275
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T L+LSP++EL Q ++EL + Q+ L +IVVA
Sbjct: 276 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK--LANGINIVVA 333
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H++ + +L+ ++IDEAD + G+E+++K ++K LP Q +L SAT
Sbjct: 334 TPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQ 393
Query: 210 SEDVLSLKHLILRN-PVILKLEEP-AIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
+ V L + L+ P+ + +++ A A V L +++ +++ +L+T LK N +
Sbjct: 394 TRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKK 453
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
+ F + Y +L L + ++ R +QF +++ +D A
Sbjct: 454 LMVFFSSCKSVKYHYEL-LNYIDLPVLAIHGRQKQNKRTTTFFQFCNADSGILLCTDVAA 512
Query: 328 --LETPQIN 334
L+ P+++
Sbjct: 513 RGLDIPEVD 521
Score = 98 (39.6 bits), Expect = 3.7e-31, Sum P(2) = 3.7e-31
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDL 400
+RG+D V ++ +D P D + YIHR GRTARG N G + + LR ++L
Sbjct: 512 ARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLN-GRGHALLILRPEEL 561
>ZFIN|ZDB-GENE-071022-2 [details] [associations]
symbol:ddx10 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
10" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-071022-2 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000074980 EMBL:CR450711 IPI:IPI00898518
Ensembl:ENSDART00000125785 ArrayExpress:F1QMM9 Bgee:F1QMM9
Uniprot:F1QMM9
Length = 875
Score = 308 (113.5 bits), Expect = 3.7e-31, Sum P(2) = 3.7e-31
Identities = 88/310 (28%), Positives = 159/310 (51%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ + + + +PT IQ + I LQ +DVL A+TGSGKT AF IP+++ + + TA +
Sbjct: 82 LKGLLEAQYRQPTEIQRQTIGFALQGRDVLGAAKTGSGKTLAFLIPVLECLYREQWTA-M 140
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
AL++SP++EL Q + ++++ V I + D+ E + R +I++
Sbjct: 141 DGLGALIISPTRELAYQTFEVLRKVGKNHEFSAGLV-IGGK-DLK-DESEKIHRTNIIIC 197
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H+ S L ++++DEAD + G+ D + A+++ LPK Q +L SAT
Sbjct: 198 TPGRLLQHMDETATFHASDLHMLVLDEADRILDMGFADTLNAIVENLPKSRQTLLFSATQ 257
Query: 210 SEDVLSLKHLILRNPVILKLEEPA-IAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGK 268
+ V L L L++P + + E A + + L +++ + +K +LY+ L+ +L Q K
Sbjct: 258 TRSVKDLARLSLKDPEYVWVHEQAKFSTPATLEQNYVVCELHQKVNMLYSFLRSHL-QKK 316
Query: 269 TIIFVNTVDKC-YKLKLYLE-QFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD-- 324
I+F + Y +++ + IS L+ + R F + V+ A+D
Sbjct: 317 IIVFFACCKEVQYLFRIFCRLRPGISVLALHGKQQQMKRVEVYNDFVRKTSAVLFATDIA 376
Query: 325 EKALETPQIN 334
+ L+ P +N
Sbjct: 377 ARGLDFPAVN 386
Score = 110 (43.8 bits), Expect = 3.7e-31, Sum P(2) = 3.7e-31
Identities = 23/41 (56%), Positives = 27/41 (65%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTAL 390
+RG+DF V+ V+ FD P D YIHR GRTAR K G AL
Sbjct: 377 ARGLDFPAVNWVLQFDCPEDANTYIHRVGRTARYKEGGEAL 417
>UNIPROTKB|F1P8J6 [details] [associations]
symbol:DDX55 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 CTD:57696 KO:K14809 GeneTree:ENSGT00550000074969
EMBL:AAEX03014637 RefSeq:XP_543371.2 Ensembl:ENSCAFT00000011945
GeneID:486246 KEGG:cfa:486246 Uniprot:F1P8J6
Length = 599
Score = 362 (132.5 bits), Expect = 3.9e-31, P = 3.9e-31
Identities = 118/408 (28%), Positives = 204/408 (50%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L A+ +LG+ T +Q IPL ++NKDV A TGSGKT AF IP+++ ++ ++ +
Sbjct: 21 LGALGQLGFPHMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPILEILLRREEKLKK 80
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ A++++P++EL Q+ + + T + + + I + + +I+VA
Sbjct: 81 NQVGAIIITPTRELAIQVDEVLAHFTKSFPQFSQILWIGGRNPADDVSRFKEQGGNIIVA 140
Query: 150 TPARA--LAHLKAKTLDLKS---SLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAIL 204
TP R + K + LDL S SLE++++DEAD + G+E + +L+FLPK + L
Sbjct: 141 TPGRLEDMFRRKVEGLDLASCVKSLEVLVLDEADRLLDMGFEASINTILEFLPKQRRTGL 200
Query: 205 ASATLSEDVLSLKHLILRNPVILKLEEPAIAPVS------QLAHYHILAQEDEKATILYT 258
SAT +++V SL LRNPV + ++E +A S +L +Y+++ + DEK L
Sbjct: 201 FSATQTQEVESLVRAGLRNPVRISVKEKGVAASSTQKTPSRLENYYMVCKADEKFNQLVH 260
Query: 259 LLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARC-HAVYQFNQGLY 317
L+ N Q K +IF +T C ++ Y K ++ S K C H + +
Sbjct: 261 FLR-NHKQEKHLIFFST---CACVEYY---GKALEALVKS---VKIMCIHGKMKHKRNK- 309
Query: 318 DVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRA 377
I + + L++ + T+ ++RGID V+ V+ +D P ++HR
Sbjct: 310 ---IFMEFRKLQSGILVCTDV----------MARGIDIPEVNWVLQYDPPSSASAFVHRC 356
Query: 378 GRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYL 425
GRTAR + G+AL F+ E+ + L+E L + + L
Sbjct: 357 GRTARIGHGGSALVFLLPMEESYVTFLEINQKCPLQEMKLQKNTGDLL 404
>TAIR|locus:2065215 [details] [associations]
symbol:AT2G47330 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003723 EMBL:AC002337 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 UniGene:At.12226 UniGene:At.25582
HOGENOM:HOG000268793 KO:K12835 EMBL:AY057700 EMBL:AY124871
IPI:IPI00516775 PIR:H84913 RefSeq:NP_566099.1
ProteinModelPortal:O22907 SMR:O22907 STRING:O22907 PaxDb:O22907
PRIDE:O22907 EnsemblPlants:AT2G47330.1 GeneID:819346
KEGG:ath:AT2G47330 GeneFarm:942 TAIR:At2g47330 InParanoid:O22907
OMA:QEYANLM PhylomeDB:O22907 ProtClustDB:CLSN2688982
Genevestigator:O22907 GermOnline:AT2G47330 Uniprot:O22907
Length = 760
Score = 312 (114.9 bits), Expect = 4.9e-31, Sum P(2) = 4.9e-31
Identities = 90/327 (27%), Positives = 167/327 (51%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
+ AI K + +PT IQ +A+P++L +DV+ A+TGSGKT AF +PMI I++ + +
Sbjct: 240 MSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRD 299
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ ++ +P++EL +Q+ ++ + V V +E L +IVVA
Sbjct: 300 EGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQFKE--LKAGCEIVVA 357
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + LK K L + + +++DEAD +F G+E +++++ + Q +L SAT+
Sbjct: 358 TPGRLIDMLKMKALTMMRA-SYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATM 416
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
V L IL +P+ + + E +A +++ + EK L L + +G
Sbjct: 417 PWKVEKLAREILSDPIRVTVGEVGMANEDITQVVNVIPSDAEKLPWLLEKLPGMIDEGDV 476
Query: 270 IIFVN---TVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEK 326
++F + TVD+ + +L L FK++ L+ + +R + +F G++ V+IA+D
Sbjct: 477 LVFASKKATVDEI-EAQLTLNSFKVAA--LHGDKDQASRMETLQKFKSGVHHVLIATDVA 533
Query: 327 A--LETPQINSTNNRKRKRDKESGVSR 351
A L+ + + N +D + V R
Sbjct: 534 ARGLDIKSLKTVVNYDIAKDMDMHVHR 560
Score = 102 (41.0 bits), Expect = 4.9e-31, Sum P(2) = 4.9e-31
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTAR-GKNQGTALSFVSLRE 397
+RG+D + + V+N+D D+ ++HR GRT R G G A + V+ RE
Sbjct: 534 ARGLDIKSLKTVVNYDIAKDMDMHVHRIGRTGRAGDRDGVAYTLVTQRE 582
Score = 37 (18.1 bits), Expect = 3.1e-24, Sum P(2) = 3.1e-24
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 335 STNNRKRKRDKESG 348
S+ NR R+R + SG
Sbjct: 744 SSENRPRERKRRSG 757
>WB|WBGene00022148 [details] [associations]
symbol:Y71G12B.8 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:FO080942 RefSeq:NP_490891.2
ProteinModelPortal:Q95XM9 SMR:Q95XM9 PaxDb:Q95XM9
EnsemblMetazoa:Y71G12B.8 GeneID:171743 KEGG:cel:CELE_Y71G12B.8
UCSC:Y71G12B.8 CTD:171743 WormBase:Y71G12B.8 InParanoid:Q95XM9
OMA:ETDREAM NextBio:872509 Uniprot:Q95XM9
Length = 739
Score = 354 (129.7 bits), Expect = 6.9e-31, Sum P(2) = 6.9e-31
Identities = 90/326 (27%), Positives = 169/326 (51%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+A + G+ +PT IQ+ IP+ L KD+ A TG+GKT AF +P+++++I + A
Sbjct: 160 LKACSGAGYSDPTPIQQACIPVALTGKDICACAATGTGKTAAFVLPILERMIYRPKGASC 219
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T+ LVL P++EL Q+ + ++L+ +V C+ + +D+ QE L PD+VVA
Sbjct: 220 --TRVLVLVPTRELAIQVFQVFRKLSTFIQLEV-CL-CAGGLDLKAQEAALRSGPDVVVA 275
Query: 150 TPARALAHL-KAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
TP R + HL + + +L S++E++++DEAD + + D M +++ + Q +L SAT
Sbjct: 276 TPGRLIDHLHNSPSFNL-SNIEVLVLDEADRMLEEAFRDQMNELIRLCAQNRQTLLFSAT 334
Query: 209 LSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHY-HILAQEDEKATILYTLLKLNLVQG 267
++E++ L + L+ PV + + E + + I A + + L Q
Sbjct: 335 MTEEIDELASMSLQKPVKIFINENTDTALKLRQEFIRIRAGRETDREAMVAALVTRTFQT 394
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD--E 325
TI+FV T C ++++ L I + S L R ++ +F + DV++++D
Sbjct: 395 NTIVFVRTKKDCQRMQILLGLLGIKVGQMQSSLTQGQRIESLSKFKKAEIDVLVSTDLAS 454
Query: 326 KALETPQINSTNNRKRKRDKESGVSR 351
+ L+ + + N + + + R
Sbjct: 455 RGLDIEGVQTVINMNMPKSIKQYIHR 480
Score = 120 (47.3 bits), Expect = 0.00089, P = 0.00089
Identities = 39/125 (31%), Positives = 59/125 (47%)
Query: 284 LYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQ-INSTNN-RKR 341
L F+ +T V + K C + Q GL + + + +L Q I S + +K
Sbjct: 387 LVTRTFQTNTIVF---VRTKKDCQRM-QILLGLLGIKVGQMQSSLTQGQRIESLSKFKKA 442
Query: 342 KRD---KESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQ 398
+ D SRG+D + V VIN + P I+ YIHR GRTAR G ++S V E+
Sbjct: 443 EIDVLVSTDLASRGLDIEGVQTVINMNMPKSIKQYIHRVGRTARAGKAGRSISLVGEDER 502
Query: 399 DLMND 403
L+ +
Sbjct: 503 KLLKE 507
Score = 50 (22.7 bits), Expect = 6.9e-31, Sum P(2) = 6.9e-31
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 377 AGRTARGKNQGTALSFVSLREQDLMNDGT 405
AG+ A+ K + ++ S SLR+ L+N G+
Sbjct: 655 AGKAAQNKKKASSNSKTSLRDIPLVNAGS 683
>UNIPROTKB|Q9NVP1 [details] [associations]
symbol:DDX18 "ATP-dependent RNA helicase DDX18"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY EMBL:AK001467 EMBL:BC001238 EMBL:BC003360 EMBL:BC024739
EMBL:X98743 EMBL:CR457060 IPI:IPI00301323 PIR:S71758
RefSeq:NP_006764.3 UniGene:Hs.363492 PDB:3LY5 PDBsum:3LY5
ProteinModelPortal:Q9NVP1 SMR:Q9NVP1 IntAct:Q9NVP1
MINT:MINT-1382348 STRING:Q9NVP1 PhosphoSite:Q9NVP1 DMDM:20532388
SWISS-2DPAGE:Q9NVP1 PaxDb:Q9NVP1 PeptideAtlas:Q9NVP1 PRIDE:Q9NVP1
Ensembl:ENST00000263239 GeneID:8886 KEGG:hsa:8886 UCSC:uc002tlh.1
CTD:8886 GeneCards:GC02P118572 HGNC:HGNC:2741 HPA:HPA035400
MIM:606355 neXtProt:NX_Q9NVP1 PharmGKB:PA27207 HOVERGEN:HBG105702
InParanoid:Q9NVP1 OrthoDB:EOG4894MF PhylomeDB:Q9NVP1
ChEMBL:CHEMBL5060 ChiTaRS:DDX18 EvolutionaryTrace:Q9NVP1
GenomeRNAi:8886 NextBio:33369 ArrayExpress:Q9NVP1 Bgee:Q9NVP1
CleanEx:HS_DDX18 Genevestigator:Q9NVP1 GermOnline:ENSG00000088205
Uniprot:Q9NVP1
Length = 670
Score = 312 (114.9 bits), Expect = 7.0e-31, Sum P(2) = 7.0e-31
Identities = 85/309 (27%), Positives = 158/309 (51%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AI ++G+ T IQ ++I +L+ +D+L A+TGSGKT AF IP ++ I+ L+ +
Sbjct: 191 LKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPR- 249
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T L+LSP++EL Q ++EL + Q+ L +I+VA
Sbjct: 250 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK--LGNGINIIVA 307
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H++ + +L+ ++IDEAD + G+E+++K ++K LP Q +L SAT
Sbjct: 308 TPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQ 367
Query: 210 SEDVLSLKHLILRN-PVILKLEEP-AIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
+ V L + L+ P+ + +++ A A V L +++ +++ +L+T LK N +
Sbjct: 368 TRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKK 427
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
+ F + + Y +L L + ++ + R +QF ++ +D A
Sbjct: 428 LMVFFSSCMSVKYHYEL-LNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSGTLLCTDVAA 486
Query: 328 --LETPQIN 334
L+ P+++
Sbjct: 487 RGLDIPEVD 495
Score = 98 (39.6 bits), Expect = 7.0e-31, Sum P(2) = 7.0e-31
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDL 400
+RG+D V ++ +D P D + YIHR GRTARG N G + + LR ++L
Sbjct: 486 ARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLN-GRGHALLILRPEEL 535
>ZFIN|ZDB-GENE-040426-2802 [details] [associations]
symbol:eif4a2 "eukaryotic translation initiation
factor 4A, isoform 2" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0006413
"translational initiation" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-040426-2802 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00530000062880
EMBL:CT027646 EMBL:CU929049 IPI:IPI00507769
ProteinModelPortal:F1R166 Ensembl:ENSDART00000130781
ArrayExpress:F1R166 Bgee:F1R166 Uniprot:F1R166
Length = 411
Score = 318 (117.0 bits), Expect = 9.1e-31, Sum P(2) = 9.1e-31
Identities = 106/346 (30%), Positives = 179/346 (51%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ I G+ +P+ IQ+RAI ++ DV+ +A++G+GKT FAI ++Q++ ++Q
Sbjct: 49 LRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQL-EIEQ---- 103
Query: 90 QETKALVLSPSKELCNQLHKNIQELT--MKCSRDVKCVDISEQVDVSVQEPLLVERPDIV 147
+ET+ALVL+P++EL Q+ K I L M S C+ V +Q+ L E P IV
Sbjct: 104 KETQALVLAPTRELAQQIQKVILALGDYMGASCHA-CIG-GTNVRNEMQK-LQAEAPHIV 160
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
V TP R L + L K +++ ++DEAD + S G++D + + + L Q +L SA
Sbjct: 161 VGTPGRVFDMLNRRYLSPKW-IKMFVLDEADEMLSRGFKDQIYEIFQKLSTNIQVVLLSA 219
Query: 208 TLSEDVLSLKHLILRNPV--ILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLV 265
T+ DVL + +R PV ++K EE + + Q Y + +E+ K L L + L
Sbjct: 220 TMPADVLEVTTKFMREPVRILVKKEELTLEGIKQF--YINVEREEWKLDTLCDLYE-TLT 276
Query: 266 QGKTIIFVNTVDKCYKL--KLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIAS 323
+ +IF+NT K L K++ F +S L+ ++ K R + +F G V+I +
Sbjct: 277 ITQAVIFLNTRRKVDWLTEKMHARDFTVSA--LHGDMDQKERDIIMREFRSGSSRVLITT 334
Query: 324 D--EKALETPQINSTNNRKRKRDKES---GVSRGIDFQFVSNVINF 364
D + ++ Q++ N ++E+ + RG F INF
Sbjct: 335 DLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINF 380
Score = 120 (47.3 bits), Expect = 0.00039, P = 0.00038
Identities = 24/55 (43%), Positives = 37/55 (67%)
Query: 349 VSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND 403
++RGID Q VS VIN+D P + + YIHR GR R +G A++FV+ ++ ++ D
Sbjct: 337 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRD 391
Score = 45 (20.9 bits), Expect = 9.1e-31, Sum P(2) = 9.1e-31
Identities = 7/28 (25%), Positives = 17/28 (60%)
Query: 404 GTALSFVSLREQDLMNDVNEYLMTNLHE 431
G A++FV+ ++ ++ D+ + T + E
Sbjct: 375 GVAINFVTEEDKRILRDIETFYNTTVEE 402
>POMBASE|SPAC1F7.02c [details] [associations]
symbol:has1 "ATP-dependent RNA helicase Has1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC1F7.02c GO:GO:0005524 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY OrthoDB:EOG4ZKNVS PIR:S62574 RefSeq:NP_594488.1
ProteinModelPortal:Q09916 STRING:Q09916 EnsemblFungi:SPAC1F7.02c.1
GeneID:2541668 KEGG:spo:SPAC1F7.02c NextBio:20802761 Uniprot:Q09916
Length = 578
Score = 306 (112.8 bits), Expect = 9.3e-31, Sum P(2) = 9.3e-31
Identities = 87/309 (28%), Positives = 164/309 (53%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ 90
+AI ++G+ T IQ+R+IP +L +DVL A+TGSGKT AF IP I+ + LK +
Sbjct: 102 KAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEMLYALKFKPR-N 160
Query: 91 ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVAT 150
T +++SP++EL Q+ +EL +K + I + + LV+ +++VAT
Sbjct: 161 GTGVIIISPTRELALQIFGVAKEL-LKYHHQTFGIVIGG-ANRRAEADKLVKGVNLLVAT 218
Query: 151 PARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLP-KLYQAILASATL 209
P R L HL+ + +L ++IDEAD + G+ED+M+ ++K LP + Q +L SAT
Sbjct: 219 PGRLLDHLQNTKGFVFRNLRSLVIDEADRILEIGFEDEMRQIMKILPSENRQTLLFSATQ 278
Query: 210 SEDVLSLKHLILR-NPVILKLEE-PAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
+ V L + L+ P+ + ++ + V L +++ D++ +L++ LK NL +
Sbjct: 279 TTKVEDLARISLKPGPLYVNVDSGKPTSTVEGLEQGYVVVDSDKRFLLLFSFLKRNLKK- 337
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
K I+F+++ + L + L+ + + R + ++F +++ ++ A
Sbjct: 338 KVIVFMSSCASVKYMAELLNYIDLPVLDLHGKQKQQRRTNTFFEFCNAEKGILLCTNVAA 397
Query: 328 --LETPQIN 334
L+ P ++
Sbjct: 398 RGLDIPAVD 406
Score = 100 (40.3 bits), Expect = 9.3e-31, Sum P(2) = 9.3e-31
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARG-KNQGTALSFVSLRE 397
+RG+D V ++ +D P D + YIHR GRTARG K G +L F++ E
Sbjct: 397 ARGLDIPAVDWIVQYDPPDDPRDYIHRVGRTARGTKGTGKSLMFLAPSE 445
>MGI|MGI:1919240 [details] [associations]
symbol:Ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 54"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003714 "transcription corepressor activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005102 "receptor binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006396 "RNA processing" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016070 "RNA metabolic process" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0030331 "estrogen receptor binding" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1919240 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
GO:GO:0006355 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
GO:GO:0030331 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14808 HOGENOM:HOG000246455 OMA:FYIPYRP
GeneTree:ENSGT00550000075100 CTD:79039 HOVERGEN:HBG051333
EMBL:AF319547 EMBL:BC043699 IPI:IPI00875042 RefSeq:NP_082317.1
UniGene:Mm.24495 ProteinModelPortal:Q8K4L0 SMR:Q8K4L0 STRING:Q8K4L0
PhosphoSite:Q8K4L0 PaxDb:Q8K4L0 PRIDE:Q8K4L0
Ensembl:ENSMUST00000031598 GeneID:71990 KEGG:mmu:71990
UCSC:uc008zhq.1 NextBio:335150 Bgee:Q8K4L0 CleanEx:MM_DDX54
Genevestigator:Q8K4L0 Uniprot:Q8K4L0
Length = 874
Score = 363 (132.8 bits), Expect = 1.0e-30, P = 1.0e-30
Identities = 108/314 (34%), Positives = 170/314 (54%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQ 90
+ I K G+ PT IQ + IP+IL KDV+ ARTGSGKT F +PM ++ LK +
Sbjct: 108 KGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER---LKARSAQT 164
Query: 91 ETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVAT 150
+AL+LSP++EL Q K +EL K + +K I + Q L E PDI++AT
Sbjct: 165 GARALILSPTRELALQTMKFTKELG-KFT-GLKTALILGGDKMEDQFAALHENPDIIIAT 222
Query: 151 PARALAHLKAKTLDLK-SSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
P R L H+ A ++LK S+E V+ DEAD +F G+ + ++ ++ LP +Q +L SATL
Sbjct: 223 PGR-LVHV-AVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIGRLPGGHQTVLFSATL 280
Query: 210 SEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLV--QG 267
+ ++ L PV+++L+ + QL +L +ED KA +L LL+ N+V Q
Sbjct: 281 PKLLVEFARAGLTEPVLIRLDVDSKLN-EQLKTSFLLVREDTKAAVLLYLLQ-NVVRPQD 338
Query: 268 KTIIFVNTVDKC-YKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD-- 324
+T++FV T Y +L + Q +S + S L AR + +F +I +D
Sbjct: 339 QTVVFVATKHHAEYLTELLMGQ-GVSCAHIYSALDQTARKINLAKFTHNKCSTLIVTDLA 397
Query: 325 EKALETPQINSTNN 338
+ L+ P +++ N
Sbjct: 398 ARGLDIPLLDNVIN 411
>ZFIN|ZDB-GENE-070912-83 [details] [associations]
symbol:ddx6 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
6" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-070912-83 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00530000063986 InterPro:IPR014014 PROSITE:PS51195
EMBL:CR759774 IPI:IPI00505165 ProteinModelPortal:E7FD91
Ensembl:ENSDART00000087382 Bgee:E7FD91 Uniprot:E7FD91
Length = 485
Score = 296 (109.3 bits), Expect = 1.0e-30, Sum P(2) = 1.0e-30
Identities = 90/322 (27%), Positives = 166/322 (51%)
Query: 23 FTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQK 79
F +C+ L I ++GW +P+ IQE +IP+ L +D+L RA+ G+GK+GA+ IP++++
Sbjct: 99 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 158
Query: 80 IINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL 139
I +LK+ + +Q A+V+ P++EL Q+ + +++ K VK + + ++
Sbjct: 159 I-DLKKDS-IQA--AVVIVPTRELALQVSQICIQVS-KHMGGVKVMATTGGTNLRDDIMR 213
Query: 140 LVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199
L E +V+ATP R L +K K + ++++++DEAD + S + M+ +L L K
Sbjct: 214 LDETVHVVIATPGRILDLIK-KGVAKVGQVQMIVLDEADKLLSQDFVQMMEEILSSLSKQ 272
Query: 200 YQAILASATLSEDVLSLKHLILRNPVILKL-EEPAIAPVSQLAHYHILAQEDEKATILYT 258
Q +L SAT V + L+ P + L EE + V+Q Y+ E +K L T
Sbjct: 273 RQILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGVTQ---YYAYVTERQKVHCLNT 329
Query: 259 LLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYD 318
L L ++IIF N+ + L + Q S +++++ + R + F GL
Sbjct: 330 LFS-RLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCR 388
Query: 319 VIIASD--EKALETPQINSTNN 338
++ +D + ++ +N N
Sbjct: 389 NLVCTDLFTRGIDIQAVNVVIN 410
Score = 105 (42.0 bits), Expect = 1.0e-30, Sum P(2) = 1.0e-30
Identities = 21/45 (46%), Positives = 31/45 (68%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVS 394
+RGID Q V+ VINFDFP + Y+HR GR+ R + G A++ ++
Sbjct: 397 TRGIDIQAVNVVINFDFPKLGETYLHRIGRSGRFGHLGLAINLIT 441
>CGD|CAL0006152 [details] [associations]
symbol:DHH1 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0000932 "cytoplasmic
mRNA processing body" evidence=IEA] [GO:0030996 "cell cycle arrest
in response to nitrogen starvation" evidence=IEA] [GO:0034063
"stress granule assembly" evidence=IEA] [GO:0000753 "cell
morphogenesis involved in conjugation with cellular fusion"
evidence=IEA] [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] [GO:0000290 "deadenylation-dependent
decapping of nuclear-transcribed mRNA" evidence=IEA] [GO:0031142
"induction of conjugation upon nitrogen starvation" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0006152 GO:GO:0005524 GO:GO:0006417
GO:GO:0006397 GO:GO:0003723 GO:GO:0000932 GO:GO:0051028
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0010494
GO:GO:0008026 EMBL:AACQ01000038 EMBL:AACQ01000037 eggNOG:COG0513
KO:K12614 InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_718704.1
RefSeq:XP_718788.1 ProteinModelPortal:Q5AAW3 SMR:Q5AAW3
GeneID:3639490 GeneID:3639628 KEGG:cal:CaO19.13577
KEGG:cal:CaO19.6197 Uniprot:Q5AAW3
Length = 549
Score = 290 (107.1 bits), Expect = 1.2e-30, Sum P(2) = 1.2e-30
Identities = 88/313 (28%), Positives = 157/313 (50%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L I + G+ +P+ IQE +IP+ L +D+L RA+ G+GKT +F IP +Q + ++
Sbjct: 42 LMGIFEAGFEKPSPIQEESIPMALAGRDILARAKNGTGKTASFIIPCLQLV-----KPKL 96
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ +AL+L P++EL Q + ++ L +C+ + + L + I+V
Sbjct: 97 NKVQALILVPTRELALQTSQVVRTLGKHVG--TQCMVTTGGTSLRDDIVRLHDPVHILVG 154
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L K +DL S + ++DEAD + S ++ ++ +L+F P QA+L SAT
Sbjct: 155 TPGRVLDLAARKVVDL-SECPLFVMDEADKMLSREFKGIIEQILEFFPPNRQALLFSATF 213
Query: 210 SEDVLSLKHLILRNPVILKL-EEPAIAPVSQLAHYHILAQEDEKATILYTLL-KLNLVQG 267
V S L P + L +E + +SQ ++ +E +K L TL KL + Q
Sbjct: 214 PLAVKSFMDKHLTKPYEINLMDELTLKGISQ---FYAFVEEKQKLHCLNTLFSKLQINQ- 269
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD--E 325
+IIF N+ ++ L + + S ++++P +AR ++F QG ++ SD
Sbjct: 270 -SIIFCNSTNRVELLAKKITELGYSCYYSHAKMPQQARNKVFHEFRQGKVRNLVCSDLLT 328
Query: 326 KALETPQINSTNN 338
+ ++ +N N
Sbjct: 329 RGIDIQAVNVVIN 341
Score = 116 (45.9 bits), Expect = 1.2e-30, Sum P(2) = 1.2e-30
Identities = 35/104 (33%), Positives = 55/104 (52%)
Query: 349 VSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQ-DLMNDGTAL 407
++RGID Q V+ VINFDFP + Y+HR GR+ R + G A++ +S ++ L L
Sbjct: 327 LTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLMSWNDRYSLYKIEQEL 386
Query: 408 SFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEV-KGFE 450
++ D + Y+ N D + +P F +DE+ KG E
Sbjct: 387 G-TEIKPIPATIDKSLYVAENA---DAVPRP--FRIDELPKGNE 424
>UNIPROTKB|Q5AAW3 [details] [associations]
symbol:DHH1 "ATP-dependent RNA helicase DHH1"
species:237561 "Candida albicans SC5314" [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0006152 GO:GO:0005524
GO:GO:0006417 GO:GO:0006397 GO:GO:0003723 GO:GO:0000932
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0008026 EMBL:AACQ01000038 EMBL:AACQ01000037
eggNOG:COG0513 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_718704.1 RefSeq:XP_718788.1 ProteinModelPortal:Q5AAW3
SMR:Q5AAW3 GeneID:3639490 GeneID:3639628 KEGG:cal:CaO19.13577
KEGG:cal:CaO19.6197 Uniprot:Q5AAW3
Length = 549
Score = 290 (107.1 bits), Expect = 1.2e-30, Sum P(2) = 1.2e-30
Identities = 88/313 (28%), Positives = 157/313 (50%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L I + G+ +P+ IQE +IP+ L +D+L RA+ G+GKT +F IP +Q + ++
Sbjct: 42 LMGIFEAGFEKPSPIQEESIPMALAGRDILARAKNGTGKTASFIIPCLQLV-----KPKL 96
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ +AL+L P++EL Q + ++ L +C+ + + L + I+V
Sbjct: 97 NKVQALILVPTRELALQTSQVVRTLGKHVG--TQCMVTTGGTSLRDDIVRLHDPVHILVG 154
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L K +DL S + ++DEAD + S ++ ++ +L+F P QA+L SAT
Sbjct: 155 TPGRVLDLAARKVVDL-SECPLFVMDEADKMLSREFKGIIEQILEFFPPNRQALLFSATF 213
Query: 210 SEDVLSLKHLILRNPVILKL-EEPAIAPVSQLAHYHILAQEDEKATILYTLL-KLNLVQG 267
V S L P + L +E + +SQ ++ +E +K L TL KL + Q
Sbjct: 214 PLAVKSFMDKHLTKPYEINLMDELTLKGISQ---FYAFVEEKQKLHCLNTLFSKLQINQ- 269
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD--E 325
+IIF N+ ++ L + + S ++++P +AR ++F QG ++ SD
Sbjct: 270 -SIIFCNSTNRVELLAKKITELGYSCYYSHAKMPQQARNKVFHEFRQGKVRNLVCSDLLT 328
Query: 326 KALETPQINSTNN 338
+ ++ +N N
Sbjct: 329 RGIDIQAVNVVIN 341
Score = 116 (45.9 bits), Expect = 1.2e-30, Sum P(2) = 1.2e-30
Identities = 35/104 (33%), Positives = 55/104 (52%)
Query: 349 VSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQ-DLMNDGTAL 407
++RGID Q V+ VINFDFP + Y+HR GR+ R + G A++ +S ++ L L
Sbjct: 327 LTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLMSWNDRYSLYKIEQEL 386
Query: 408 SFVSLREQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEV-KGFE 450
++ D + Y+ N D + +P F +DE+ KG E
Sbjct: 387 G-TEIKPIPATIDKSLYVAENA---DAVPRP--FRIDELPKGNE 424
>MGI|MGI:1915098 [details] [associations]
symbol:Ddx55 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 55"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915098 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P26196 CTD:57696
HOGENOM:HOG000268803 HOVERGEN:HBG107796 KO:K14809 OrthoDB:EOG4WH8KN
GeneTree:ENSGT00550000074969 OMA:CACVEYW EMBL:AK129402
EMBL:AK033741 EMBL:AK154422 EMBL:BC117786 EMBL:BC117787
IPI:IPI00453808 RefSeq:NP_080685.2 UniGene:Mm.281601
ProteinModelPortal:Q6ZPL9 SMR:Q6ZPL9 IntAct:Q6ZPL9 STRING:Q6ZPL9
PRIDE:Q6ZPL9 Ensembl:ENSMUST00000071057 GeneID:67848 KEGG:mmu:67848
UCSC:uc008zqc.2 InParanoid:Q6ZPL9 NextBio:325707 Bgee:Q6ZPL9
CleanEx:MM_DDX55 Genevestigator:Q6ZPL9
GermOnline:ENSMUSG00000029389 Uniprot:Q6ZPL9
Length = 600
Score = 358 (131.1 bits), Expect = 1.2e-30, P = 1.2e-30
Identities = 117/408 (28%), Positives = 207/408 (50%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L A+ +LG+ T +Q IPL ++NKDV A TGSGKT AF IP+++ ++ ++ +
Sbjct: 21 LGALRELGFPHMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPILEILLRREEKLKK 80
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ A+V++P++EL Q+ + + T + + + I + E +I+VA
Sbjct: 81 NQVGAIVITPTRELAIQIDEVLSHFTKHFPQFSQILWIGGRNPGEDVERFKQHGGNIIVA 140
Query: 150 TPARA--LAHLKAKTLDLKS---SLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAIL 204
TP R + KA+ LDL S SL+++++DEAD + G+E + +L+FLPK + L
Sbjct: 141 TPGRLEDMFRRKAEGLDLASCVKSLDVLVLDEADRLLDMGFEASINTILEFLPKQRRTGL 200
Query: 205 ASATLSEDVLSLKHLILRNPVILKLEEPAIAPVS------QLAHYHILAQEDEKATILYT 258
SAT +++V +L LRNPV + ++E +A S +L +++++ + DEK L
Sbjct: 201 FSATQTQEVENLVRAGLRNPVRISVKEKGVAASSTQKTPSRLENHYMICKADEKFNQLVH 260
Query: 259 LLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARC-HAVYQFNQGLY 317
L+ + Q K ++F +T C ++ Y K +L K C H ++ +
Sbjct: 261 FLR-SRQQEKHLVFFST---CACVEYY---GKALEALLKK---VKILCIHGKMKYKRNK- 309
Query: 318 DVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRA 377
I + + L++ + T+ ++RGID V+ V+ +D P + ++HR
Sbjct: 310 ---IFMEFRKLQSGILVCTDV----------MARGIDIPEVNWVLQYDPPSNASAFVHRC 356
Query: 378 GRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNEYL 425
GRTAR + G+AL F+ E+ +N L+E L + + L
Sbjct: 357 GRTARIGHGGSALVFLLPMEEAYINFLAINQKCPLQEMSLQRNTIDLL 404
>GENEDB_PFALCIPARUM|PFC0915w [details] [associations]
symbol:PFC0915w "ATP-dependent RNA helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006200 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL844502 HOGENOM:HOG000268797 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
ProtClustDB:CLSZ2429504 RefSeq:XP_001351278.1
ProteinModelPortal:O97285 SMR:O97285 EnsemblProtists:PFC0915w:mRNA
GeneID:814522 KEGG:pfa:PFC0915w EuPathDB:PlasmoDB:PF3D7_0320800
Uniprot:O97285
Length = 433
Score = 282 (104.3 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 90/326 (27%), Positives = 159/326 (48%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L I + G+ +P+ IQE +IP+ L K++L RA+ G+GKT AFAIP+++K K Q
Sbjct: 72 LMGIFEKGYEKPSPIQEESIPVALAGKNILARAKNGTGKTAAFAIPLLEKCNTHKNFIQ- 130
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
L+L P++EL Q I+EL V+C+ + + L I+
Sbjct: 131 ----GLILVPTRELALQTSAMIKELGKHMK--VQCMVTTGGTSLREDIMRLYNVVHILCG 184
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L L K + S I+++DEAD + S ++ ++ ++KFLPK Q ++ SAT
Sbjct: 185 TPGRIL-DLANKDVANLSGCHIMVMDEADKLLSPEFQPIVEELMKFLPKEKQILMYSATF 243
Query: 210 SEDVLSLKHLILRNPVILKL-EEPAIAPVSQLAHYHILAQEDEKATILYTLL-KLNLVQG 267
V + + L + + L +E + ++Q Y+ +E +K L TL KL + Q
Sbjct: 244 PVTVKEFRAIYLSDAHEINLMDELTLKGITQ---YYAFVKERQKVHCLNTLFAKLQINQA 300
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD--E 325
IIF N++ + L + + S+ +++ + R + F G +++SD
Sbjct: 301 --IIFCNSITRVELLAKKITELGYSSFYIHARMSQTHRNRVFHDFRNGACRCLVSSDLFT 358
Query: 326 KALETPQINSTNNRKRKRDKESGVSR 351
+ ++ +N N ++ E+ + R
Sbjct: 359 RGIDIQSVNVVINFDFPKNSETYLHR 384
Score = 115 (45.5 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 21/49 (42%), Positives = 34/49 (69%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQ 398
+RGID Q V+ VINFDFP + + Y+HR GR+ R + G A++ ++ ++
Sbjct: 358 TRGIDIQSVNVVINFDFPKNSETYLHRIGRSGRYGHLGLAINLITFEDR 406
>UNIPROTKB|P54824 [details] [associations]
symbol:ddx6 "ATP-dependent RNA helicase ddx6" species:8355
"Xenopus laevis" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0005654 "nucleoplasm" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003723
GO:GO:0030529 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG106685 CTD:1656 EMBL:X92421 EMBL:BC170228 EMBL:BC170230
RefSeq:NP_001083721.1 UniGene:Xl.157 IntAct:P54824 PRIDE:P54824
GeneID:399080 KEGG:xla:399080 Xenbase:XB-GENE-922237 Uniprot:P54824
Length = 481
Score = 292 (107.8 bits), Expect = 1.5e-30, Sum P(2) = 1.5e-30
Identities = 88/322 (27%), Positives = 165/322 (51%)
Query: 23 FTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQK 79
F +C+ L I ++GW +P+ IQE +IP+ L +D+L RA+ G+GK+GA+ IP++++
Sbjct: 97 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 156
Query: 80 IINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPL 139
+ +LK+ +Q A+V+ P++EL Q+ + +++ K K + + ++
Sbjct: 157 L-DLKKDC-IQ---AMVIVPTRELALQVSQICIQVS-KHMGGAKVMATTGGTNLRDDIMR 210
Query: 140 LVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199
L + +V+ATP R L +K K + ++++++DEAD + S + M+ ++ LPK
Sbjct: 211 LDDTVHVVIATPGRILDLIK-KGVAKVDHIQMIVLDEADKLLSQDFMQIMEDIIMTLPKN 269
Query: 200 YQAILASATLSEDVLSLKHLILRNPVILKL-EEPAIAPVSQLAHYHILAQEDEKATILYT 258
Q +L SAT V L L+ P + L EE + V+Q Y+ E +K L T
Sbjct: 270 RQILLYSATFPLSVQKFMTLHLQKPYEINLMEELTLKGVTQ---YYAYVTERQKVHCLNT 326
Query: 259 LLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYD 318
L L ++IIF N+ + L + Q S +++++ + R + F GL
Sbjct: 327 LFS-RLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCR 385
Query: 319 VIIASD--EKALETPQINSTNN 338
++ +D + ++ +N N
Sbjct: 386 NLVCTDLFTRGIDIQAVNVVIN 407
Score = 108 (43.1 bits), Expect = 1.5e-30, Sum P(2) = 1.5e-30
Identities = 21/45 (46%), Positives = 31/45 (68%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVS 394
+RGID Q V+ VINFDFP + Y+HR GR+ R + G A++ ++
Sbjct: 394 TRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLIT 438
>CGD|CAL0000625 [details] [associations]
symbol:SPB4 species:5476 "Candida albicans" [GO:0030686 "90S
preribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0000027 "ribosomal large subunit assembly" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 KO:K14809 EMBL:AACQ01000202 EMBL:AACQ01000200
RefSeq:XP_711358.1 RefSeq:XP_711406.1 ProteinModelPortal:Q59NP8
STRING:Q59NP8 GeneID:3647008 GeneID:3647042 KEGG:cal:CaO19.11631
KEGG:cal:CaO19.4154 CGD:CAL0005749 Uniprot:Q59NP8
Length = 631
Score = 358 (131.1 bits), Expect = 1.6e-30, P = 1.6e-30
Identities = 139/450 (30%), Positives = 212/450 (47%)
Query: 31 QAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIIN-------- 82
+AI+ +G+ T +Q IPL+ NKDV+V A TGSGKT +F IP++QKI +
Sbjct: 23 EAISSMGYPTMTPVQASTIPLLSGNKDVVVEAVTGSGKTLSFVIPVLQKISDRLYKPDSD 82
Query: 83 --LKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDV----SVQ 136
L + + ++VLSP++EL NQ+ ++ D K I+ Q+ V +V+
Sbjct: 83 GDLPEPVKRGHMLSIVLSPTRELANQIQSVFNQVLQYLPED-KGTRINTQLLVGSIGNVR 141
Query: 137 EPL---LVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVL 193
E L L +P I++ TP R L L + SSLEIVI+DEAD + F +E D+ +L
Sbjct: 142 EDLNQFLTNQPQILIGTPGRILEFLGSSQSIKTSSLEIVILDEADKLLDFSFEKDVINIL 201
Query: 194 KFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLE------EPAIAPVSQLAHYHILA 247
K LPK + L SAT+S ++ + NPV ++++ E + +P S Y ++
Sbjct: 202 KKLPKQRRTGLFSATISSAGNTIFRTGMNNPVKVQVKSKNYFGEQSNSPKSLQLSYMMIN 261
Query: 248 QEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKA-RC 306
E K T L T+L + K I++ T C +K + + F +S+ P K
Sbjct: 262 PE-LKITTLLTILSKYQYK-KAIVYFPT---CTSVKHFYQIFNKVYQQESSDEPLKFFSL 316
Query: 307 HAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDF 366
H Q N S K L+ N K +RGID V VI D
Sbjct: 317 HG--QLNT-------KSRLKTLDNFTQGDINLYKHILMTTDVAARGIDIPDVDLVIQIDP 367
Query: 367 PLDIQCYIHRAGRTARGKNQGTALSFVS--LREQDLMNDGTALSFVSLREQDLMNDVNEY 424
P D ++HR GRT R G A+ ++ +E+D + + + L +QD+
Sbjct: 368 PTDPNVFLHRCGRTGRANKVGRAIVMLNDNCQEEDYIGF-MEVKGIFLTKQDIPTSS--- 423
Query: 425 LMTNLHEDDFIIKPYQFNLDEVKGFEYRAK 454
NLHE+ F IK Q+ L++ E K
Sbjct: 424 ATKNLHEN-FQIKLRQYMLEDRARHELAVK 452
>UNIPROTKB|Q8JFP1 [details] [associations]
symbol:EIF4A2 "Eukaryotic initiation factor 4A-II"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 GeneTree:ENSGT00530000062880 HSSP:P60842
KO:K03257 OrthoDB:EOG4640C1 CTD:1974 OMA:TENDARQ EMBL:AF515726
EMBL:AJ720280 IPI:IPI00588868 RefSeq:NP_989880.1 UniGene:Gga.4580
ProteinModelPortal:Q8JFP1 SMR:Q8JFP1 STRING:Q8JFP1 PRIDE:Q8JFP1
Ensembl:ENSGALT00000014135 Ensembl:ENSGALT00000039726 GeneID:395232
KEGG:gga:395232 InParanoid:Q8JFP1 NextBio:20815321
ArrayExpress:Q8JFP1 Uniprot:Q8JFP1
Length = 407
Score = 316 (116.3 bits), Expect = 1.6e-30, Sum P(2) = 1.6e-30
Identities = 105/346 (30%), Positives = 177/346 (51%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKI-INLKQTAQ 88
L+ I G+ +P+ IQ+RAI ++ DV+ +A++G+GKT FAI ++Q++ I+LK
Sbjct: 45 LRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIDLK---- 100
Query: 89 VQETKALVLSPSKELCNQLHKNIQELTMKCSRDVK-CVDISEQVDVSVQEPLLVERPDIV 147
ET+ALVL+P++EL Q+ K I L C+ V +Q+ L E P IV
Sbjct: 101 --ETQALVLAPTRELAQQIQKVILALGDYMGATCHACIG-GTNVRNEMQK-LQAEAPHIV 156
Query: 148 VATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASA 207
V TP R L + L K +++ ++DEAD + S G++D + + + L Q +L SA
Sbjct: 157 VGTPGRVFDMLNRRYLSPKW-IKMFVLDEADEMLSRGFKDQIYEIFQKLSTNIQVVLLSA 215
Query: 208 TLSEDVLSLKHLILRNPV--ILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLV 265
T+ DVL + +R P+ ++K EE + + Q Y + +E+ K L L + L
Sbjct: 216 TMPMDVLEVTKKFMREPIRILVKKEELTLEGIKQF--YINVEREEWKLDTLCDLYE-TLT 272
Query: 266 QGKTIIFVNTVDKCYKL--KLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIAS 323
+ +IF+NT K L K++ F +S L+ ++ K R + +F G V+I +
Sbjct: 273 ITQAVIFLNTRRKVDWLTEKMHARDFTVSA--LHGDMDQKERDVIMREFRSGSSRVLITT 330
Query: 324 D--EKALETPQINSTNNRKRKRDKES---GVSRGIDFQFVSNVINF 364
D + ++ Q++ N ++E+ + RG F INF
Sbjct: 331 DLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINF 376
Score = 120 (47.3 bits), Expect = 0.00038, P = 0.00038
Identities = 24/55 (43%), Positives = 37/55 (67%)
Query: 349 VSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND 403
++RGID Q VS VIN+D P + + YIHR GR R +G A++FV+ ++ ++ D
Sbjct: 333 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRD 387
Score = 45 (20.9 bits), Expect = 1.6e-30, Sum P(2) = 1.6e-30
Identities = 7/28 (25%), Positives = 17/28 (60%)
Query: 404 GTALSFVSLREQDLMNDVNEYLMTNLHE 431
G A++FV+ ++ ++ D+ + T + E
Sbjct: 371 GVAINFVTEEDKRILRDIETFYNTTVEE 398
>UNIPROTKB|F1NEQ3 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
OMA:KDGYRSY GeneTree:ENSGT00680000100037 EMBL:AADN02016926
IPI:IPI00598837 Ensembl:ENSGALT00000019841 Uniprot:F1NEQ3
Length = 659
Score = 318 (117.0 bits), Expect = 1.7e-30, Sum P(2) = 1.7e-30
Identities = 85/309 (27%), Positives = 158/309 (51%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ I+ +G+ T IQ ++I +L+ +D+L A+TGSGKT AF IP ++ I LK +
Sbjct: 178 LKGISDMGFTHMTEIQHKSIKPLLEGRDILAAAKTGSGKTLAFLIPAVELIYKLKFMPR- 236
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
T ++LSP++EL Q + ++EL + Q+ L +I+VA
Sbjct: 237 NGTGVIILSPTRELAMQTYGVLKELMNHHVHTYGLIMGGSNRSAEAQK--LGNGINIIVA 294
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R L H++ + +L+ ++IDEAD + G+E++MK ++K LPK Q +L SAT
Sbjct: 295 TPGRLLDHMQNTPGFMYKNLQCLVIDEADRILEVGFEEEMKQIIKLLPKRRQTMLFSATQ 354
Query: 210 SEDVLSLKHLILRN-PVILKLEE-PAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQG 267
+ V L + L+ P+ + +++ A V L +++ +++ +L+T LK N +
Sbjct: 355 TRKVEDLAKISLKKEPLYVGVDDNKETATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKK 414
Query: 268 KTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKA 327
+ F + + Y +L L + ++ + R +QF +++ +D A
Sbjct: 415 LMVFFSSCMSVKYHYEL-LNYIDLPVLAIHGKQKQTKRTTTFFQFCNAESGILLCTDVAA 473
Query: 328 --LETPQIN 334
L+ P+++
Sbjct: 474 RGLDIPEVD 482
Score = 87 (35.7 bits), Expect = 1.7e-30, Sum P(2) = 1.7e-30
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 350 SRGIDFQFVSNVINFDFPLDIQC--YIHRAGRTARGKNQGTALSFVSLREQDL 400
+RG+D V ++ +D P D + YIHR GRTARG N G + + LR ++L
Sbjct: 473 ARGLDIPEVDWIVQYDPPDDPKQKEYIHRVGRTARGIN-GRGHALLILRPEEL 524
>POMBASE|SPAC1093.05 [details] [associations]
symbol:SPAC1093.05 "ATP-dependent RNA helicase Hca4
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC1093.05 GO:GO:0005829 GO:GO:0005524
EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
OMA:MFERKNQ OrthoDB:EOG4R53B0 PIR:T50068 RefSeq:NP_594652.1
ProteinModelPortal:Q9UTP9 SMR:Q9UTP9 STRING:Q9UTP9
EnsemblFungi:SPAC1093.05.1 GeneID:2541630 KEGG:spo:SPAC1093.05
NextBio:20802723 Uniprot:Q9UTP9
Length = 735
Score = 299 (110.3 bits), Expect = 1.7e-30, Sum P(2) = 1.7e-30
Identities = 88/312 (28%), Positives = 159/312 (50%)
Query: 32 AIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQE 91
A+ ++ T IQ++ IP L+ +D+L A+TGSGKT AF +P+I+ + K T+ +
Sbjct: 53 ALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTS-LDG 111
Query: 92 TKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATP 151
ALV+SP++EL Q + + ++ S + +E + R +I+V TP
Sbjct: 112 LGALVISPTRELAIQTFETLVKIGRLHSFSAGLIIGGNNYK---EEKERLSRMNILVCTP 168
Query: 152 ARALAHL-KAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLS 210
R L H+ +A D S L+++I+DEAD + G+ + A++ LP Q +L SAT +
Sbjct: 169 GRLLQHIDQAVNFDT-SGLQMLILDEADRILDMGFRTTLDAIVSSLPVHRQTMLFSATQT 227
Query: 211 EDVLSLKHLILRNPVILKLEEPAIAPV-SQLAHYHILAQEDEKATILYTLLKLNLVQGKT 269
+ V L L L+NP + + E + S L +++ EK IL+ ++ +L + KT
Sbjct: 228 KSVKDLARLSLQNPDFISVHENDTSSTPSNLNQFYLTVPLTEKLDILFGFIRTHL-KFKT 286
Query: 270 IIFVNTVDKCYKLKLYLEQFK-----ISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
I+F+++ C +++ E F+ IS L+ + R +F + V+ +D
Sbjct: 287 IVFLSS---CKQVRFVYETFRRMRPGISLLHLHGKQKQTTRTEVTAKFTSSRHVVLFCTD 343
Query: 325 --EKALETPQIN 334
+ L+ P ++
Sbjct: 344 IVARGLDFPAVD 355
Score = 111 (44.1 bits), Expect = 1.7e-30, Sum P(2) = 1.7e-30
Identities = 23/42 (54%), Positives = 26/42 (61%)
Query: 349 VSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTAL 390
V+RG+DF V VI D P D+ YIHR GRTAR G AL
Sbjct: 345 VARGLDFPAVDWVIQLDAPEDVDTYIHRVGRTARYNRSGNAL 386
>UNIPROTKB|Q3SZ65 [details] [associations]
symbol:EIF4A2 "Eukaryotic initiation factor 4A-II"
species:9913 "Bos taurus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 GeneTree:ENSGT00530000062880 KO:K03257
OrthoDB:EOG4640C1 EMBL:BC103106 IPI:IPI00711238
RefSeq:NP_001029216.1 UniGene:Bt.13925 ProteinModelPortal:Q3SZ65
SMR:Q3SZ65 STRING:Q3SZ65 PRIDE:Q3SZ65 Ensembl:ENSBTAT00000019596
GeneID:286819 KEGG:bta:286819 CTD:1974 InParanoid:Q3SZ65
OMA:TENDARQ NextBio:20806473 ArrayExpress:Q3SZ65 Uniprot:Q3SZ65
Length = 407
Score = 315 (115.9 bits), Expect = 2.1e-30, Sum P(2) = 2.1e-30
Identities = 102/345 (29%), Positives = 176/345 (51%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ I G+ +P+ IQ+RAI ++ DV+ +A++G+GKT FAI ++Q++ +
Sbjct: 45 LRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQL-----EIEF 99
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVK-CVDISEQVDVSVQEPLLVERPDIVV 148
+ET+ALVL+P++EL Q+ K I L C+ V +Q+ L E P IVV
Sbjct: 100 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIG-GTNVRNEMQK-LQAEAPHIVV 157
Query: 149 ATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
TP R L + L K +++ ++DEAD + S G++D + + + L Q +L SAT
Sbjct: 158 GTPGRVFDMLNRRYLSPKW-IKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSAT 216
Query: 209 LSEDVLSLKHLILRNPV--ILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQ 266
+ DVL + +R+P+ ++K EE + + Q Y + +E+ K L L + L
Sbjct: 217 MPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQF--YINVEREEWKLDTLCDLYE-TLTI 273
Query: 267 GKTIIFVNTVDKCYKL--KLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
+ +IF+NT K L K++ F +S L+ ++ K R + +F G V+I +D
Sbjct: 274 TQAVIFLNTRRKVDWLTEKMHARDFTVSA--LHGDMDQKERDVIMREFRSGSSRVLITTD 331
Query: 325 --EKALETPQINSTNNRKRKRDKES---GVSRGIDFQFVSNVINF 364
+ ++ Q++ N ++E+ + RG F INF
Sbjct: 332 LLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINF 376
Score = 120 (47.3 bits), Expect = 0.00038, P = 0.00038
Identities = 24/55 (43%), Positives = 37/55 (67%)
Query: 349 VSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND 403
++RGID Q VS VIN+D P + + YIHR GR R +G A++FV+ ++ ++ D
Sbjct: 333 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRD 387
Score = 45 (20.9 bits), Expect = 2.1e-30, Sum P(2) = 2.1e-30
Identities = 7/28 (25%), Positives = 17/28 (60%)
Query: 404 GTALSFVSLREQDLMNDVNEYLMTNLHE 431
G A++FV+ ++ ++ D+ + T + E
Sbjct: 371 GVAINFVTEEDKRILRDIETFYNTTVEE 398
>UNIPROTKB|E2R3J1 [details] [associations]
symbol:EIF4A2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 KO:K03257 CTD:1974 OMA:TENDARQ
EMBL:AAEX03017297 RefSeq:XP_860499.2 ProteinModelPortal:E2R3J1
SMR:E2R3J1 PRIDE:E2R3J1 Ensembl:ENSCAFT00000021683 GeneID:488118
KEGG:cfa:488118 NextBio:20861546 Uniprot:E2R3J1
Length = 407
Score = 315 (115.9 bits), Expect = 2.1e-30, Sum P(2) = 2.1e-30
Identities = 102/345 (29%), Positives = 176/345 (51%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ I G+ +P+ IQ+RAI ++ DV+ +A++G+GKT FAI ++Q++ +
Sbjct: 45 LRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQL-----EIEF 99
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVK-CVDISEQVDVSVQEPLLVERPDIVV 148
+ET+ALVL+P++EL Q+ K I L C+ V +Q+ L E P IVV
Sbjct: 100 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIG-GTNVRNEMQK-LQAEAPHIVV 157
Query: 149 ATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
TP R L + L K +++ ++DEAD + S G++D + + + L Q +L SAT
Sbjct: 158 GTPGRVFDMLNRRYLSPKW-IKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSAT 216
Query: 209 LSEDVLSLKHLILRNPV--ILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQ 266
+ DVL + +R+P+ ++K EE + + Q Y + +E+ K L L + L
Sbjct: 217 MPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQF--YINVEREEWKLDTLCDLYE-TLTI 273
Query: 267 GKTIIFVNTVDKCYKL--KLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
+ +IF+NT K L K++ F +S L+ ++ K R + +F G V+I +D
Sbjct: 274 TQAVIFLNTRRKVDWLTEKMHARDFTVSA--LHGDMDQKERDVIMREFRSGSSRVLITTD 331
Query: 325 --EKALETPQINSTNNRKRKRDKES---GVSRGIDFQFVSNVINF 364
+ ++ Q++ N ++E+ + RG F INF
Sbjct: 332 LLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINF 376
Score = 120 (47.3 bits), Expect = 0.00038, P = 0.00038
Identities = 24/55 (43%), Positives = 37/55 (67%)
Query: 349 VSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND 403
++RGID Q VS VIN+D P + + YIHR GR R +G A++FV+ ++ ++ D
Sbjct: 333 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRD 387
Score = 45 (20.9 bits), Expect = 2.1e-30, Sum P(2) = 2.1e-30
Identities = 7/28 (25%), Positives = 17/28 (60%)
Query: 404 GTALSFVSLREQDLMNDVNEYLMTNLHE 431
G A++FV+ ++ ++ D+ + T + E
Sbjct: 371 GVAINFVTEEDKRILRDIETFYNTTVEE 398
>UNIPROTKB|Q14240 [details] [associations]
symbol:EIF4A2 "Eukaryotic initiation factor 4A-II"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0004386
"helicase activity" evidence=TAS] [GO:0006446 "regulation of
translational initiation" evidence=TAS] [GO:0016281 "eukaryotic
translation initiation factor 4F complex" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0019221 "cytokine-mediated signaling
pathway" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 Reactome:REACT_21257 Reactome:REACT_17015
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 Reactome:REACT_6900
GO:GO:0019048 GO:GO:0006446 GO:GO:0016281 EMBL:CH471052
GO:GO:0019221 GO:GO:0004386 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000289
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG107989 Reactome:REACT_1762 KO:K03257
CTD:1974 OMA:TENDARQ EMBL:D30655 EMBL:BT009860 EMBL:AC112907
EMBL:BC012547 EMBL:BC013708 EMBL:BC015842 EMBL:BC048105
IPI:IPI00328328 IPI:IPI00409717 RefSeq:NP_001958.2
UniGene:Hs.518475 UniGene:Hs.599481 PDB:3BOR PDBsum:3BOR
ProteinModelPortal:Q14240 SMR:Q14240 IntAct:Q14240 MINT:MINT-202114
STRING:Q14240 PhosphoSite:Q14240 DMDM:45645183 PaxDb:Q14240
PRIDE:Q14240 DNASU:1974 Ensembl:ENST00000323963
Ensembl:ENST00000440191 GeneID:1974 KEGG:hsa:1974 UCSC:uc003fqs.3
UCSC:uc003fqu.3 GeneCards:GC03P186539 H-InvDB:HIX0003899
HGNC:HGNC:3284 HPA:CAB011690 MIM:601102 neXtProt:NX_Q14240
PharmGKB:PA27712 InParanoid:Q14240 PhylomeDB:Q14240 ChiTaRS:EIF4A2
EvolutionaryTrace:Q14240 GenomeRNAi:1974 NextBio:7991
PMAP-CutDB:Q14240 ArrayExpress:Q14240 Bgee:Q14240 CleanEx:HS_EIF4A2
Genevestigator:Q14240 GermOnline:ENSG00000156976 Uniprot:Q14240
Length = 407
Score = 315 (115.9 bits), Expect = 2.1e-30, Sum P(2) = 2.1e-30
Identities = 102/345 (29%), Positives = 176/345 (51%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ I G+ +P+ IQ+RAI ++ DV+ +A++G+GKT FAI ++Q++ +
Sbjct: 45 LRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQL-----EIEF 99
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVK-CVDISEQVDVSVQEPLLVERPDIVV 148
+ET+ALVL+P++EL Q+ K I L C+ V +Q+ L E P IVV
Sbjct: 100 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIG-GTNVRNEMQK-LQAEAPHIVV 157
Query: 149 ATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
TP R L + L K +++ ++DEAD + S G++D + + + L Q +L SAT
Sbjct: 158 GTPGRVFDMLNRRYLSPKW-IKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSAT 216
Query: 209 LSEDVLSLKHLILRNPV--ILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQ 266
+ DVL + +R+P+ ++K EE + + Q Y + +E+ K L L + L
Sbjct: 217 MPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQF--YINVEREEWKLDTLCDLYE-TLTI 273
Query: 267 GKTIIFVNTVDKCYKL--KLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
+ +IF+NT K L K++ F +S L+ ++ K R + +F G V+I +D
Sbjct: 274 TQAVIFLNTRRKVDWLTEKMHARDFTVSA--LHGDMDQKERDVIMREFRSGSSRVLITTD 331
Query: 325 --EKALETPQINSTNNRKRKRDKES---GVSRGIDFQFVSNVINF 364
+ ++ Q++ N ++E+ + RG F INF
Sbjct: 332 LLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINF 376
Score = 120 (47.3 bits), Expect = 0.00038, P = 0.00038
Identities = 24/55 (43%), Positives = 37/55 (67%)
Query: 349 VSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND 403
++RGID Q VS VIN+D P + + YIHR GR R +G A++FV+ ++ ++ D
Sbjct: 333 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRD 387
Score = 45 (20.9 bits), Expect = 2.1e-30, Sum P(2) = 2.1e-30
Identities = 7/28 (25%), Positives = 17/28 (60%)
Query: 404 GTALSFVSLREQDLMNDVNEYLMTNLHE 431
G A++FV+ ++ ++ D+ + T + E
Sbjct: 371 GVAINFVTEEDKRILRDIETFYNTTVEE 398
>UNIPROTKB|A6M930 [details] [associations]
symbol:EIF4A2 "Eukaryotic translation initiation factor 4A
isoform 2" species:9823 "Sus scrofa" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003743 "translation initiation factor activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 KO:K03257 CTD:1974 OMA:TENDARQ
EMBL:CU633961 EMBL:DQ351285 RefSeq:NP_001093665.1 UniGene:Ssc.10843
ProteinModelPortal:A6M930 SMR:A6M930 PRIDE:A6M930
Ensembl:ENSSSCT00000012915 GeneID:100101928 KEGG:ssc:100101928
Uniprot:A6M930
Length = 407
Score = 315 (115.9 bits), Expect = 2.1e-30, Sum P(2) = 2.1e-30
Identities = 102/345 (29%), Positives = 176/345 (51%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ I G+ +P+ IQ+RAI ++ DV+ +A++G+GKT FAI ++Q++ +
Sbjct: 45 LRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQL-----EIEF 99
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVK-CVDISEQVDVSVQEPLLVERPDIVV 148
+ET+ALVL+P++EL Q+ K I L C+ V +Q+ L E P IVV
Sbjct: 100 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIG-GTNVRNEMQK-LQAEAPHIVV 157
Query: 149 ATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
TP R L + L K +++ ++DEAD + S G++D + + + L Q +L SAT
Sbjct: 158 GTPGRVFDMLNRRYLSPKW-IKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSAT 216
Query: 209 LSEDVLSLKHLILRNPV--ILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQ 266
+ DVL + +R+P+ ++K EE + + Q Y + +E+ K L L + L
Sbjct: 217 MPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQF--YINVEREEWKLDTLCDLYE-TLTI 273
Query: 267 GKTIIFVNTVDKCYKL--KLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
+ +IF+NT K L K++ F +S L+ ++ K R + +F G V+I +D
Sbjct: 274 TQAVIFLNTRRKVDWLTEKMHARDFTVSA--LHGDMDQKERDVIMREFRSGSSRVLITTD 331
Query: 325 --EKALETPQINSTNNRKRKRDKES---GVSRGIDFQFVSNVINF 364
+ ++ Q++ N ++E+ + RG F INF
Sbjct: 332 LLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINF 376
Score = 120 (47.3 bits), Expect = 0.00038, P = 0.00038
Identities = 24/55 (43%), Positives = 37/55 (67%)
Query: 349 VSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND 403
++RGID Q VS VIN+D P + + YIHR GR R +G A++FV+ ++ ++ D
Sbjct: 333 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRD 387
Score = 45 (20.9 bits), Expect = 2.1e-30, Sum P(2) = 2.1e-30
Identities = 7/28 (25%), Positives = 17/28 (60%)
Query: 404 GTALSFVSLREQDLMNDVNEYLMTNLHE 431
G A++FV+ ++ ++ D+ + T + E
Sbjct: 371 GVAINFVTEEDKRILRDIETFYNTTVEE 398
>MGI|MGI:106906 [details] [associations]
symbol:Eif4a2 "eukaryotic translation initiation factor 4A2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0006413 "translational
initiation" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:106906 GO:GO:0005524
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 KO:K03257 OrthoDB:EOG4640C1 CTD:1974
OMA:TENDARQ EMBL:X12507 EMBL:X14422 EMBL:X56953 EMBL:AK076509
EMBL:U64706 IPI:IPI00400432 IPI:IPI00409918 PIR:S00985
RefSeq:NP_038534.2 UniGene:Mm.260084 ProteinModelPortal:P10630
SMR:P10630 IntAct:P10630 STRING:P10630 PhosphoSite:P10630
PaxDb:P10630 PRIDE:P10630 Ensembl:ENSMUST00000023599
Ensembl:ENSMUST00000115341 GeneID:13682 KEGG:mmu:13682
NextBio:284442 Bgee:P10630 CleanEx:MM_EIF4A2 Genevestigator:P10630
GermOnline:ENSMUSG00000022884 Uniprot:P10630
Length = 407
Score = 315 (115.9 bits), Expect = 2.1e-30, Sum P(2) = 2.1e-30
Identities = 102/345 (29%), Positives = 176/345 (51%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ I G+ +P+ IQ+RAI ++ DV+ +A++G+GKT FAI ++Q++ +
Sbjct: 45 LRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQL-----EIEF 99
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVK-CVDISEQVDVSVQEPLLVERPDIVV 148
+ET+ALVL+P++EL Q+ K I L C+ V +Q+ L E P IVV
Sbjct: 100 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIG-GTNVRNEMQK-LQAEAPHIVV 157
Query: 149 ATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
TP R L + L K +++ ++DEAD + S G++D + + + L Q +L SAT
Sbjct: 158 GTPGRVFDMLNRRYLSPKW-IKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSAT 216
Query: 209 LSEDVLSLKHLILRNPV--ILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQ 266
+ DVL + +R+P+ ++K EE + + Q Y + +E+ K L L + L
Sbjct: 217 MPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQF--YINVEREEWKLDTLCDLYE-TLTI 273
Query: 267 GKTIIFVNTVDKCYKL--KLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD 324
+ +IF+NT K L K++ F +S L+ ++ K R + +F G V+I +D
Sbjct: 274 TQAVIFLNTRRKVDWLTEKMHARDFTVSA--LHGDMDQKERDVIMREFRSGSSRVLITTD 331
Query: 325 --EKALETPQINSTNNRKRKRDKES---GVSRGIDFQFVSNVINF 364
+ ++ Q++ N ++E+ + RG F INF
Sbjct: 332 LLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINF 376
Score = 120 (47.3 bits), Expect = 0.00038, P = 0.00038
Identities = 24/55 (43%), Positives = 37/55 (67%)
Query: 349 VSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND 403
++RGID Q VS VIN+D P + + YIHR GR R +G A++FV+ ++ ++ D
Sbjct: 333 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRD 387
Score = 45 (20.9 bits), Expect = 2.1e-30, Sum P(2) = 2.1e-30
Identities = 7/28 (25%), Positives = 17/28 (60%)
Query: 404 GTALSFVSLREQDLMNDVNEYLMTNLHE 431
G A++FV+ ++ ++ D+ + T + E
Sbjct: 371 GVAINFVTEEDKRILRDIETFYNTTVEE 398
WARNING: HSPs involving 613 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.136 0.387 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 540 528 0.00091 119 3 11 22 0.38 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 863
No. of states in DFA: 607 (65 KB)
Total size of DFA: 278 KB (2146 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 47.08u 0.08s 47.16t Elapsed: 00:00:15
Total cpu time: 47.18u 0.08s 47.26t Elapsed: 00:00:19
Start: Thu Aug 15 13:01:17 2013 End: Thu Aug 15 13:01:36 2013
WARNINGS ISSUED: 2