RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16633
(540 letters)
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 208
Score = 125 bits (314), Expect = 9e-34
Identities = 56/213 (26%), Positives = 106/213 (49%), Gaps = 14/213 (6%)
Query: 22 TFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNK-DVLVRARTGSGKTGAFAIPMI 77
F + L AI G+ +PT IQ + IPL L ++ +++ +ARTGSGKT +FAIP+I
Sbjct: 5 NFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLI 64
Query: 78 QKIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQE 137
+ + + + ++ +++ +K ++ I Q+
Sbjct: 65 ELVNENNGIEAII--LTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIK----- 117
Query: 138 PLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLP 197
++ +IVV TP R L H+ TL+L +++ I+DEAD + + G+ D++ +L
Sbjct: 118 --ALKNANIVVGTPGRILDHINRGTLNL-KNVKYFILDEADEMLNMGFIKDVEKILNACN 174
Query: 198 KLYQAILASATLSEDVLSLKHLILRNPVILKLE 230
K + +L SAT+ ++L+L + + +K +
Sbjct: 175 KDKRILLFSATMPREILNLAKKYMGDYSFIKAK 207
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 207
Score = 120 bits (302), Expect = 3e-32
Identities = 49/196 (25%), Positives = 91/196 (46%), Gaps = 5/196 (2%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+AI G+ P+ +Q IP + DVL +A++G GKT F + +Q++ +
Sbjct: 13 LRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVS- 71
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
LV+ ++EL Q+ K + + V +E L P IVV
Sbjct: 72 ----VLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVG 127
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R LA + K+L+LK ++ + ++ D++ + + P Q ++ SATL
Sbjct: 128 TPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATL 187
Query: 210 SEDVLSLKHLILRNPV 225
S+++ + +++P+
Sbjct: 188 SKEIRPVCRKFMQDPM 203
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 118 bits (296), Expect = 3e-31
Identities = 61/196 (31%), Positives = 103/196 (52%), Gaps = 9/196 (4%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L+ + G+ EP+ IQ+RAI I++ DVL +A++G+GKTG F+I +Q+I V
Sbjct: 22 LRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT-----SV 76
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ +AL+L+P++EL Q+ K + L V + + IVV
Sbjct: 77 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LRDAQIVVG 133
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R +++ + +++ I+DEAD + S G+++ + + LP Q +L SAT+
Sbjct: 134 TPGRVFDNIQRRRFRT-DKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATM 192
Query: 210 SEDVLSLKHLILRNPV 225
DVL + +RNPV
Sbjct: 193 PNDVLEVTTKFMRNPV 208
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo
sapiens) [TaxId: 9606]}
Length = 218
Score = 116 bits (291), Expect = 2e-30
Identities = 63/213 (29%), Positives = 112/213 (52%), Gaps = 10/213 (4%)
Query: 22 TFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQ 78
+F + L+ I G+ +P+ IQ+RAI ++ DV+ +A++G+GKT FAI ++Q
Sbjct: 13 SFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQ 72
Query: 79 KIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEP 138
+I ++ T+ALVL+P++EL Q+ K + L V +
Sbjct: 73 QI-----ELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRA-EVQK 126
Query: 139 LLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPK 198
L +E P I+V TP R L + L K ++ ++DEAD + S G++D + + + L
Sbjct: 127 LQMEAPHIIVGTPGRVFDMLNRRYLSPKYI-KMFVLDEADEMLSRGFKDQIYDIFQKLNS 185
Query: 199 LYQAILASATLSEDVLSLKHLILRNPVILKLEE 231
Q +L SAT+ DVL + +R+P+ + +++
Sbjct: 186 NTQVVLLSATMPSDVLEVTKKFMRDPIRILVKK 218
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 117 bits (294), Expect = 4e-30
Identities = 44/354 (12%), Positives = 94/354 (26%), Gaps = 54/354 (15%)
Query: 51 LILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKN 110
+ + + ++ G+GKT + ++++ I + + L+L+P++ + ++ +
Sbjct: 5 IFRKKRLTIMDLHPGAGKTKRYLPAIVREAIK-------RGLRTLILAPTRVVAAEMEEA 57
Query: 111 IQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLE 170
++ L + + R + + A L + +
Sbjct: 58 LRGLPI-------------RYQTPAIRAEHTGREIVDLMCHATFTMRLLSPIRV--PNYN 102
Query: 171 IVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLE 230
++I+DEA + I +AT N I+ E
Sbjct: 103 LIIMDEAHFTDPASIAARGYISTRVEMGEAAGIFMTATPPGSRDPFPQ---SNAPIMDEE 159
Query: 231 EPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFK 290
H + + GKT+ FV ++ + L +
Sbjct: 160 REIPERSWNSGHEWVTDFK-----------------GKTVWFVPSIKAGNDIAACLRKNG 202
Query: 291 ISTCVLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVS 350
L+ + + I+ +R D +
Sbjct: 203 KKVIQLSRKTFDSEYIKTRTNDWDFVVTTDISEMGANF---------KAERVIDPRRCMK 253
Query: 351 RGIDFQFVSNVINF-DFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND 403
I VI P+ R GR R + L ND
Sbjct: 254 PVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKNENDQYIYM--GEPLEND 305
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 222
Score = 113 bits (284), Expect = 2e-29
Identities = 58/212 (27%), Positives = 117/212 (55%), Gaps = 11/212 (5%)
Query: 22 TFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQ 78
TF + L+ I G+ +P+ IQ+RAI I++ +DV+ ++++G+GKT F+I ++Q
Sbjct: 18 TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ 77
Query: 79 KIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEP 138
+ QV+ET+AL+L+P++EL Q+ K + L +V+C +V
Sbjct: 78 CLDI-----QVRETQALILAPTRELAVQIQKGLLALGDYM--NVQCHACIGGTNVGEDIR 130
Query: 139 LLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPK 198
L +V TP R + + +++++++DEAD + + G+++ + V ++LP
Sbjct: 131 KLDYGQHVVAGTPGRV-FDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPP 189
Query: 199 LYQAILASATLSEDVLSLKHLILRNPVILKLE 230
Q +L SATL ++L + + + +P+ + ++
Sbjct: 190 ATQVVLISATLPHEILEMTNKFMTDPIRILVK 221
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase
VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}
Length = 238
Score = 108 bits (270), Expect = 2e-27
Identities = 53/217 (24%), Positives = 102/217 (47%), Gaps = 14/217 (6%)
Query: 22 TFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQ 78
F + I + PT IQ+ AIP IL+++D++ A+TGSGKT AF IP+I
Sbjct: 22 NFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIIN 81
Query: 79 KIIN----LKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVS 134
++ ++ ++ K L+L+P++EL Q+ Q + ++ + D
Sbjct: 82 HLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQ--KFSLNTPLRSCVVYGGADTH 139
Query: 135 VQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLK 194
Q + ++VATP R + ++ + L+ IV+ + AD + G+E ++ +++
Sbjct: 140 SQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDE-ADRMLDMGFEPQIRKIIE 198
Query: 195 FLPKLY----QAILASATLSEDVLSLKHLILRNPVIL 227
Q ++ SAT +++ L L N + +
Sbjct: 199 ESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFM 235
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 206
Score = 103 bits (258), Expect = 4e-26
Identities = 55/196 (28%), Positives = 102/196 (52%), Gaps = 7/196 (3%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
L I ++GW +P+ IQE +IP+ L +D+L RA+ G+GK+GA+ IP+++ + +
Sbjct: 15 LMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE-----RLDLKK 69
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+A+V+ P++EL Q+ + + K K + + ++ L + +V+A
Sbjct: 70 DNIQAMVIVPTRELALQVSQICIQ-VSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIA 128
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
TP R + L K + ++++++DEAD + S + M+ ++ LPK Q +L SAT
Sbjct: 129 TPGR-ILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATF 187
Query: 210 SEDVLSLKHLILRNPV 225
V + L P
Sbjct: 188 PLSVQKFMNSHLEKPY 203
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 206
Score = 103 bits (258), Expect = 4e-26
Identities = 61/213 (28%), Positives = 95/213 (44%), Gaps = 11/213 (5%)
Query: 22 TFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQ 78
TF F + L I + G+ +P+ IQE AIP+ + +D+L RA+ G+GKT AF IP ++
Sbjct: 2 TFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLE 61
Query: 79 KIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEP 138
K+ Q L + T+ + C+ + ++
Sbjct: 62 KVKPKLNKIQALIM-------VPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDIL 114
Query: 139 LLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPK 198
L E I+V TP R L K DL + I+DEAD + S ++ ++ +L FLP
Sbjct: 115 RLNETVHILVGTPGRVLDLASRKVADLSDC-SLFIMDEADKMLSRDFKTIIEQILSFLPP 173
Query: 199 LYQAILASATLSEDVLSLKHLILRNPVILKLEE 231
+Q++L SAT V L P + L E
Sbjct: 174 THQSLLFSATFPLTVKEFMVKHLHKPYEINLME 206
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 91.5 bits (226), Expect = 1e-21
Identities = 32/209 (15%), Positives = 62/209 (29%), Gaps = 31/209 (14%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
+ EP IQ+ IL+ + A TG GKT + + K+
Sbjct: 33 FVEFFRKCVGEPRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLALKGKR---- 88
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCV----DISEQVDVSVQEPLLVERPD 145
V+ P+ L Q + I++ K + + +
Sbjct: 89 ----CYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFK 144
Query: 146 IVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSF-----------GYEDDMKAVLK 194
IV+ T H + + + +D+ D + G+ D+K
Sbjct: 145 IVITTTQFLSKHYRE-----LGHFDFIFVDDVDAILKASKNVDKLLHLLGFHYDLKTKSW 199
Query: 195 FLPKLYQAILASATLSEDVLSLKHLILRN 223
++++AT + K + R
Sbjct: 200 VGEARGCLMVSTATAKKGK---KAELFRQ 225
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 209
Score = 89.0 bits (219), Expect = 6e-21
Identities = 49/210 (23%), Positives = 92/210 (43%), Gaps = 7/210 (3%)
Query: 22 TFTLFCIP---LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQ 78
FT F ++AI L + +PT IQER IP L+ + ++ +++TG+GKT A+ +P+++
Sbjct: 2 QFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIME 61
Query: 79 KIINLKQTAQVQETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEP 138
KI + Q T + R + + D
Sbjct: 62 KIKPERAEVQAVIT---APTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALE 118
Query: 139 LLVERPDIVVATPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPK 198
L +P IV+ TP R ++ + LD+ ++ +V+ + + G+ D+ + +PK
Sbjct: 119 KLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADL-MLDMGFITDVDQIAARMPK 177
Query: 199 LYQAILASATLSEDVLSLKHLILRNPVILK 228
Q ++ SAT+ E + + NP +
Sbjct: 178 DLQMLVFSATIPEKLKPFLKKYMENPTFVH 207
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli
[TaxId: 562]}
Length = 206
Score = 86.6 bits (213), Expect = 4e-20
Identities = 35/197 (17%), Positives = 71/197 (36%), Gaps = 22/197 (11%)
Query: 37 GWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALV 96
G+ + QE I +L +D LV TG GK+ + IP + +V
Sbjct: 22 GYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLN-----------GLTVV 70
Query: 97 LSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALA 156
+SP L +Q + + + + V + ++ P R +
Sbjct: 71 VSPLISLMKDQVDQLQ--ANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLML 128
Query: 157 HLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDM-----KAVLKFLPKLYQAILASATLSE 211
+ L + ++ +DEA + +G++ + + P L + +AT +
Sbjct: 129 DNFLEHLAHW-NPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTL-PFMALTATADD 186
Query: 212 DVLS--LKHLILRNPVI 226
++ L L +P+I
Sbjct: 187 TTRQDIVRLLGLNDPLI 203
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 202
Score = 76.2 bits (186), Expect = 2e-16
Identities = 32/185 (17%), Positives = 74/185 (40%), Gaps = 18/185 (9%)
Query: 30 LQAIAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQV 89
+ + + G E Q A+ + K++L+ T +GKT + M+++ I ++
Sbjct: 15 VGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLY- 73
Query: 90 QETKALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVA 149
+ P + L + +++ ++ R E D + DI+V
Sbjct: 74 -------VVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDEHLG------DCDIIVT 120
Query: 150 TPARALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMK---AVLKFLPKLYQAILAS 206
T +A + ++ + +K+ +++DE L+ S ++ ++ + K + I S
Sbjct: 121 TSEKADSLIRNRASWIKAV-SCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLS 179
Query: 207 ATLSE 211
AT
Sbjct: 180 ATAPN 184
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 299
Score = 77.7 bits (191), Expect = 2e-16
Identities = 26/143 (18%), Positives = 40/143 (27%), Gaps = 32/143 (22%)
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCH----------AVYQFNQGL 316
G+ +IF ++ KC +L L I+ L A+ G
Sbjct: 37 GRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTSGDVVVVATDALMTGFTGD 96
Query: 317 YDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHR 376
+D +I + + + P D R
Sbjct: 97 FDSVIDCNTCV-------------TQTV-------DFSLDPTFTIETTTLPQDAVSRTQR 136
Query: 377 AGRTARGKNQGTALSFVSLREQD 399
GRT RGK G FV+ E+
Sbjct: 137 RGRTGRGK-PGIY-RFVAPGERP 157
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus
(HCV), different isolates [TaxId: 11103]}
Length = 138
Score = 59.7 bits (144), Expect = 2e-11
Identities = 28/159 (17%), Positives = 41/159 (25%), Gaps = 35/159 (22%)
Query: 243 YHILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPA 302
L+ E + + G+ +IF ++ KC +L L I+ L
Sbjct: 12 EVALSTTGEIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDV 71
Query: 303 KARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSN-- 360
N + G F S
Sbjct: 72 SVIP------------------------------TNGDVVVVATDALMTGFTGDFDSVID 101
Query: 361 -VINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQ 398
+ P D R GRT RGK G FV+ E+
Sbjct: 102 CNTSDGKPQDAVSRTQRRGRTGRGK-PGIY-RFVAPGER 138
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 155
Score = 60.0 bits (144), Expect = 2e-11
Identities = 38/166 (22%), Positives = 67/166 (40%), Gaps = 25/166 (15%)
Query: 238 SQLAHYHILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLN 297
+ + ++ E+E+ L LLK + ++F T +L L ++
Sbjct: 2 ANIEQSYVEVNENERFEALCRLLKNK--EFYGLVFCKTKRDTKELASMLRDIGFKAGAIH 59
Query: 298 SELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQF 357
+L R + F Q ++IA+D +SRGID
Sbjct: 60 GDLSQSQREKVIRLFKQKKIRILIATDV-----------------------MSRGIDVND 96
Query: 358 VSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND 403
++ VIN+ P + + Y+HR GRT R +G A+S ++ RE +
Sbjct: 97 LNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRY 142
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 162
Score = 57.2 bits (137), Expect = 2e-10
Identities = 46/162 (28%), Positives = 73/162 (45%), Gaps = 24/162 (14%)
Query: 242 HYHILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELP 301
Y + +E+ K L L ++ + +IF NT K +L L K + + S+LP
Sbjct: 4 FYVNVEEEEYKYECLTDLYD-SISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLP 62
Query: 302 AKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNV 361
+ R + +F G ++I++D A RGID Q VS V
Sbjct: 63 QQERDTIMKEFRSGSSRILISTDLLA-----------------------RGIDVQQVSLV 99
Query: 362 INFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND 403
IN+D P + + YIHR GR R +G A++FV+ + M +
Sbjct: 100 INYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRE 141
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 286
Score = 58.8 bits (141), Expect = 3e-10
Identities = 28/174 (16%), Positives = 57/174 (32%), Gaps = 35/174 (20%)
Query: 237 VSQLAHYHILAQEDEKATILYTLLKLNLVQ---GKTIIFVNTVDKCYKLKLYLEQFKIST 293
+S L + + K L +++ L + K I+F N + K+ L + I
Sbjct: 129 ISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKA 188
Query: 294 CVLNSELPAKARCH--------AVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDK 345
+ + + +F +G ++V++A+
Sbjct: 189 KRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVG------------------- 229
Query: 346 ESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQD 399
G+D V V+ ++ I R GRT R G + ++ +D
Sbjct: 230 ----EEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHM-PGRVIILMAKGTRD 278
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 248
Score = 57.9 bits (139), Expect = 5e-10
Identities = 29/233 (12%), Positives = 61/233 (26%), Gaps = 37/233 (15%)
Query: 246 LAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKAR 305
+A DE + L ++L+ + II+ T ++ ++ L+ + +
Sbjct: 7 VAVNDESISTLSSILEK--LGTGGIIYARTGEEAEEIYESLKNK------FRIGIVTATK 58
Query: 306 CHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQF-VSNVINF 364
+F +G D +I + + RG+D + +
Sbjct: 59 KGDYEKFVEGEIDHLIGTA-------------------HYYGTLVRGLDLPERIRFAVFV 99
Query: 365 DFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLRE-----QDLMN 419
P + Q L R D + + E + +M
Sbjct: 100 GCP----SFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMG 155
Query: 420 DVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRSNYFEDNPTDLETL 472
+ + +I P + G R + D L
Sbjct: 156 KERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSEL 208
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 55.2 bits (131), Expect = 2e-09
Identities = 27/200 (13%), Positives = 63/200 (31%), Gaps = 13/200 (6%)
Query: 33 IAKLGWLEPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQET 92
+ + ++P + QE + L+ TG GKT + ++
Sbjct: 2 VLRRDLIQPRIYQEVIYAKCK-ETNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVL---- 56
Query: 93 KALVLSPSKELCNQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPA 152
+L+P+K L Q ++ + + ++ + S +E V+
Sbjct: 57 ---MLAPTKPLVLQHAESFR----RLFNLPPEKIVALTGEKSPEERSKAWARAKVIVATP 109
Query: 153 RALAHLKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSED 212
+ + + + +++ DEA + K K I +A+
Sbjct: 110 QTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPGST 169
Query: 213 VLSLKHLILRNPVILKLEEP 232
+ ++ N I +E
Sbjct: 170 PEKIME-VINNLGIEHIEYR 188
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 53.0 bits (126), Expect = 7e-09
Identities = 43/182 (23%), Positives = 78/182 (42%), Gaps = 29/182 (15%)
Query: 242 HYHILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELP 301
+ + +E+ K L L L + +IF NT K L + + + ++ ++P
Sbjct: 11 FFVAVEREEWKFDTLCDLYD-TLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMP 69
Query: 302 AKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNV 361
K R + +F G V+I++D +RG+D VS +
Sbjct: 70 QKERESIMKEFRSGASRVLISTDV-----------------------WARGLDVPQVSLI 106
Query: 362 INFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND-----GTALSFVSLREQD 416
IN+D P + + YIHR GR+ R +G A++FV + ++ D T + + + D
Sbjct: 107 INYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVAD 166
Query: 417 LM 418
L+
Sbjct: 167 LI 168
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia
coli [TaxId: 562]}
Length = 200
Score = 50.0 bits (118), Expect = 1e-07
Identities = 26/156 (16%), Positives = 51/156 (32%), Gaps = 25/156 (16%)
Query: 242 HYHILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELP 301
Y ++ + ++ + + II+ N+ K L+ IS ++ L
Sbjct: 8 RYMLMEKFKPLDQLMRYVQEQR--GKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLE 65
Query: 302 AKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNV 361
R +F + +++A+ GI+ V V
Sbjct: 66 NNVRADVQEKFQRDDLQIVVATVAF-----------------------GMGINKPNVRFV 102
Query: 362 INFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLRE 397
++FD P +I+ Y GR R A+ F +
Sbjct: 103 VHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD 138
>d2rb4a1 c.37.1.19 (A:307-474) ATP-dependent RNA helicase DDX25
{Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 48.8 bits (115), Expect = 2e-07
Identities = 39/168 (23%), Positives = 67/168 (39%), Gaps = 30/168 (17%)
Query: 242 HYHILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELP 301
+Y + +K L + ++ G+ IIF T L + + Q +L+ EL
Sbjct: 9 YYVLCEHRKDKYQALCNIYG-SITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELT 67
Query: 302 AKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNV 361
+ R + +F G V+I ++ +RGID + V+ V
Sbjct: 68 VEQRASIIQRFRDGKEKVLITTNVC-----------------------ARGIDVKQVTIV 104
Query: 362 INFDFP------LDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND 403
+NFD P D + Y+HR GRT R +G A + + + E +
Sbjct: 105 VNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMK 152
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 200
Score = 48.0 bits (113), Expect = 6e-07
Identities = 32/215 (14%), Positives = 57/215 (26%), Gaps = 39/215 (18%)
Query: 185 YEDDMKAVLKFLPKLYQAILASATLSEDVLSLKHLILRNPVILKLEEPAIAPVSQLAHYH 244
YE K +FL + + ++ V++ + + EE
Sbjct: 23 YEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEALRAWEE----------ARR 72
Query: 245 ILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKA 304
I K L +L+ + K IIF + Y+ + +
Sbjct: 73 IAFNSKNKIRKLREILE-RHRKDKIIIFTRHNELVYR-----ISKVFLIPAITHRTSREE 126
Query: 305 RCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINF 364
R + F G + I++S + GID + +
Sbjct: 127 REEILEGFRTGRFRAIVSSQV-----------------------LDEGIDVPDANVGVIM 163
Query: 365 DFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQD 399
+ YI R GR R L +
Sbjct: 164 SGSGSAREYIQRLGRILRPSKGKKEAVLYELISRG 198
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 171
Score = 41.6 bits (96), Expect = 6e-05
Identities = 40/167 (23%), Positives = 72/167 (43%), Gaps = 24/167 (14%)
Query: 237 VSQLAHYHILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVL 296
+ + Y+ +E +K L TL L + IIF N+ ++ L + S
Sbjct: 4 LKGITQYYAFVEERQKLHCLNTLFS-KLQINQAIIFCNSTNRVELLAKKITDLGYSCYYS 62
Query: 297 NSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQ 356
++ + + R ++F QG ++ SD ++RGID Q
Sbjct: 63 HARMKQQERNKVFHEFRQGKVRTLVCSDL-----------------------LTRGIDIQ 99
Query: 357 FVSNVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLMND 403
V+ VINFDFP + Y+HR GR+ R + G A++ ++ ++ +
Sbjct: 100 AVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYK 146
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 38.1 bits (87), Expect = 6e-04
Identities = 26/158 (16%), Positives = 47/158 (29%), Gaps = 22/158 (13%)
Query: 51 LILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLHKN 110
++ + ++ G+GKT F ++ + + V +VLS KE + L
Sbjct: 3 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGLDVK 62
Query: 111 IQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSSLE 170
E +D L R L + ++
Sbjct: 63 FHTQAFSA-----HGSGREVIDAMCHATLT-----------YRMLEPTRVVNWEV----- 101
Query: 171 IVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASAT 208
+I+DEA + A + IL +AT
Sbjct: 102 -IIMDEAHFLDPASIAARGWAAHRARANESATILMTAT 138
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 38.5 bits (88), Expect = 6e-04
Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 24/158 (15%)
Query: 240 LAHYHILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSE 299
L Y++ +++EK L+ LL L + +IFV +V +C L L + ++
Sbjct: 2 LQQYYVKLKDNEKNRKLFDLLD-VLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRG 60
Query: 300 LPAKARCHAVYQFNQGLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVS 359
+P + R QF +++A++ RG+D + V+
Sbjct: 61 MPQEERLSRYQQFKDFQRRILVATNLF-----------------------GRGMDIERVN 97
Query: 360 NVINFDFPLDIQCYIHRAGRTARGKNQGTALSFVSLRE 397
N+D P D Y+HR R R +G A++FVS
Sbjct: 98 IAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 135
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme
UvrB {Bacillus caldotenax [TaxId: 1395]}
Length = 181
Score = 38.6 bits (89), Expect = 7e-04
Identities = 26/169 (15%), Positives = 52/169 (30%), Gaps = 23/169 (13%)
Query: 255 ILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQ 314
++ + + +T++ T L YL++ I L+SE+ R +
Sbjct: 20 LIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRL 79
Query: 315 GLYDVIIASDEKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYI 374
G YDV++ + + G+D VS V D +
Sbjct: 80 GKYDVLVGIN-----------------------LLREGLDIPEVSLVAILDADKEGFLRS 116
Query: 375 HRAGRTARGKNQGTALSFVSLREQDLMNDGTALSFVSLREQDLMNDVNE 423
R+ G+ A V + + + R + + + N
Sbjct: 117 ERSLIQTIGRAARNANGHVIMYADTITKSMEIAIQETKRRRAIQEEYNR 165
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 136
Score = 34.1 bits (77), Expect = 0.012
Identities = 26/165 (15%), Positives = 41/165 (24%), Gaps = 37/165 (22%)
Query: 50 PLILQNKDV-LVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELCNQLH 108
P + Q+ V + A TGSGK+ + K LVL+PS
Sbjct: 2 PAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ-----------GYKVLVLNPSVAATLGFG 50
Query: 109 KNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLDLKSS 168
+ + V A +
Sbjct: 51 AYMSKAHGVDPNIRTGVRTITTGSPITYSTYG----------------KFLADGGCSGGA 94
Query: 169 LEIVIIDEADLVFSFGYEDDM-----KAVLKFLPKLYQAILASAT 208
+I+I DE S + + +LA+AT
Sbjct: 95 YDIIICDECH---STDATSILGIGTVLDQAETAGARLV-VLATAT 135
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 201
Score = 34.9 bits (79), Expect = 0.015
Identities = 24/152 (15%), Positives = 51/152 (33%), Gaps = 18/152 (11%)
Query: 267 GKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVI---IAS 323
G ++F +T K + L + V N L + ++ L + + A
Sbjct: 41 GGVLVFESTRRGAEKTAVKLSAI-TAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAF 99
Query: 324 DEKALETPQINSTNNRKRKRDKESGVS------------RGIDFQFVSNVINFDFPLDIQ 371
L Q + R+ + + V+ R + + + + + +
Sbjct: 100 HHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVS 159
Query: 372 CYIHRAGRTARG--KNQGTALSFVSLREQDLM 401
Y AGR R +G A+ V R++++
Sbjct: 160 EYKQMAGRAGRPGMDERGEAIIIVGKRDREIA 191
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia
coli, RepD [TaxId: 562]}
Length = 306
Score = 34.7 bits (78), Expect = 0.023
Identities = 14/73 (19%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
Query: 45 QERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELC 104
Q++A+ + LV A GSGKT + KI +L + Q ++ + +
Sbjct: 6 QQQAVEFVTGP--CLVLAGAGSGKTRV----ITNKIAHLIRGCGYQARHIAAVTFTNKAA 59
Query: 105 NQLHKNIQELTMK 117
++ + + + +
Sbjct: 60 REMKERVGQTLGR 72
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 206
Score = 29.8 bits (66), Expect = 0.58
Identities = 21/165 (12%), Positives = 44/165 (26%), Gaps = 34/165 (20%)
Query: 45 QERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELC 104
QE+A+ L +K + TGSGKT + + + L
Sbjct: 75 QEKALERWLVDKRGCIVLPTGSGKTHVAMAAINELSTPTLIVVP-----------TLALA 123
Query: 105 NQLHKNIQELTMKCSRDVKCVDISEQVDVSVQEPLLVERPDIVVATPARALAHLKAKTLD 164
Q + + + + + +
Sbjct: 124 EQWKERLGIFGEEYVGEFSGRIKELKPLTVSTYDSAYVNAE------------------K 165
Query: 165 LKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
L + ++I DE + + Y + + ++ L +AT
Sbjct: 166 LGNRFMLLIFDEVHHLPAESY----VQIAQMSIAPFRLGL-TATF 205
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus
stearothermophilus, PcrA [TaxId: 1422]}
Length = 318
Score = 30.0 bits (66), Expect = 0.70
Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 6/73 (8%)
Query: 45 QERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELC 104
Q+ A+ +L+ A GSGKT + +I L V L ++ + +
Sbjct: 16 QQEAV--RTTEGPLLIMAGAGSGKTRV----LTHRIAYLMAEKHVAPWNILAITFTNKAA 69
Query: 105 NQLHKNIQELTMK 117
++ + +Q L
Sbjct: 70 REMRERVQSLLGG 82
>g1qhh.1 c.37.1.19 (A:,B:,C:,D:) DEXX box DNA helicase {Bacillus
stearothermophilus, PcrA [TaxId: 1422]}
Length = 623
Score = 29.9 bits (66), Expect = 0.99
Identities = 44/358 (12%), Positives = 97/358 (27%), Gaps = 31/358 (8%)
Query: 45 QERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSPSKELC 104
Q+ A+ +L+ A GSGKT + +I L V L ++ + +
Sbjct: 16 QQEAV--RTTEGPLLIMAGAGSGKTRV----LTHRIAYLMAEKHVAPWNILAITFTNKAA 69
Query: 105 NQLHKNIQELTMKCSRDVK-------CVDISEQVDVSVQEPLLVERPDIVVATPARALAH 157
++ + +Q L + DV CV I + + + + P L+
Sbjct: 70 REMRERVQSLLGGAAEDVWISTFHSMCVRI-----LRRDIDRIGINRNFSILDPTDQLSV 124
Query: 158 LKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATLSEDVLSLK 217
+K + + S + + + + + L
Sbjct: 125 MKTILKEKNIDPKKFEPRTILGTISAAKNELLPPEQFAKRYYEKVVSDVYQEYQQRLLRN 184
Query: 218 HLI-----LRNPVILKLEEPAIAPVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTIIF 272
H + + + L P + Q +I E + L L + I
Sbjct: 185 HSLDFDDLIMTTIQLFDRVPDVLHYYQYKFQYIHIDEYQDTNRAQYTLVKKLAERFQNIC 244
Query: 273 VNTVDKCY-------KLKLYLEQFKISTCVLNSELPAKARCHA-VYQFNQGLYDVIIASD 324
++ L + L R + Q + + +
Sbjct: 245 AVGDADQSIYRWRGADIQNILSFERDYPNAKVILLEQNYRSTKRILQAANEVIEHNVNRK 304
Query: 325 EKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTAR 382
K + T + E+ ++ + + V + ++R +R
Sbjct: 305 PKRIWTENPEGKPILYYEAMNEADEAQFVAGRIREAVERGERRYRDFAVLYRTNAQSR 362
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 299
Score = 29.2 bits (65), Expect = 1.1
Identities = 21/127 (16%), Positives = 36/127 (28%), Gaps = 13/127 (10%)
Query: 266 QGKTIIFVNTVDKCYKLKLYLEQFKISTCVLNSELPAKARCHAVYQFNQGLYDVIIASD- 324
+ T F+ ++ + L + S VLN + + Q D I+A+D
Sbjct: 36 KRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYP----TIKQKKPDFILATDI 91
Query: 325 -EKALETPQINSTNNRKRKRDKESGVSRGIDFQFVSNVINFDFPLDIQCYIHRAGRTARG 383
E + R + R + I + R GR R
Sbjct: 92 AEMGANLCVERVLDCRTAFKPVLVDEGRKVA-------IKGPLRISASSAAQRRGRIGRN 144
Query: 384 KNQGTAL 390
N+
Sbjct: 145 PNRDGDS 151
>d1t77a2 b.55.1.6 (A:2076-2185) Lipopolysaccharide-responsive and
beige-like anchor protein LRBA {Human (Homo sapiens)
[TaxId: 9606]}
Length = 110
Score = 28.0 bits (62), Expect = 1.2
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 158 LKAKTLDLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKL 199
+ L ++LEI + + ++F+F +K V+ FLP++
Sbjct: 67 FSRRYLLQNTALEIFMANRVAVMFNFPDPATVKKVVNFLPRV 108
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA,
nucleotide-binding domains {Bacillus subtilis [TaxId:
1423]}
Length = 175
Score = 27.9 bits (62), Expect = 2.1
Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 9/59 (15%)
Query: 351 RGIDFQFVSNVINFD--------FPLDIQCYIHRAGRTARGKNQGTALSFVSLREQDLM 401
RG D + V + GR+ R + G ++S+ E +LM
Sbjct: 94 RGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSM-EDELM 151
>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 113
Score = 26.9 bits (58), Expect = 2.9
Identities = 14/102 (13%), Positives = 29/102 (28%), Gaps = 3/102 (2%)
Query: 235 APVSQLAHYHILAQEDEKATILYTLLKLNLVQGKTIIFVNTVDKCYKLKLYLEQFKISTC 294
AP+ Y L E+E + +L++ F I+T
Sbjct: 5 APIFDPKTYTALVPENEIGF---EVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTD 61
Query: 295 VLNSELPAKARCHAVYQFNQGLYDVIIASDEKALETPQINST 336
+++ ++ + I + + P ST
Sbjct: 62 PESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTST 103
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 27.6 bits (60), Expect = 4.0
Identities = 20/185 (10%), Positives = 52/185 (28%), Gaps = 11/185 (5%)
Query: 40 EPTLIQERAIPLILQNKDVLVRARTGSGKTGAFAIPMIQKIINLKQTAQVQETKALVLSP 99
+ + +P + + +LV TG+GK+ + + + + +LS
Sbjct: 35 KQVTVAGVPMPRDAEPRHLLVNGATGTGKS-VLLRELAYTGLLRGDRMVIVDPNGDMLSK 93
Query: 100 SKELCNQLHKNIQELTMK------CSRDVKCVDISEQV---DVSVQEPLLVERPDIVVAT 150
+ + + T D + V + + +++
Sbjct: 94 FGRDKDIILNPYDQRTKGWSFFNEIRNDYDWQRYALSVVPRGKTDEAEEWASYGRLLLRE 153
Query: 151 PARALAHLKAKTL-DLKSSLEIVIIDEADLVFSFGYEDDMKAVLKFLPKLYQAILASATL 209
A+ LA + ++ +L I D+ + + A K + +
Sbjct: 154 TAKKLALIGTPSMRELFHWTTIATFDDLRGFLEGTLAESLFAGSNEASKALTSARFVLSD 213
Query: 210 SEDVL 214
Sbjct: 214 KLPEH 218
>d2fp1a1 a.130.1.4 (A:35-199) Secreted chorismate mutase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 165
Score = 26.4 bits (58), Expect = 5.7
Identities = 17/112 (15%), Positives = 37/112 (33%), Gaps = 3/112 (2%)
Query: 413 REQDLMNDVNEYLMTNLHEDDFIIKPYQFNLDEVKGFEYRAKDAWRSNYFE--DNPTDLE 470
R + + + E + + D++ + + + + EY W+ N P DL
Sbjct: 38 RVEQQLAKLGEDARSQHIDPDYVTRVFDDQIRATEAIEYSRFSDWKLNPASAPPEPPDLS 97
Query: 471 TLRHDKALYTVRIQSHLADVPDYIVPPA-LKKLARIEDDGDEDVRAEPITDE 521
R R+ S + + P+ +L R + D + +
Sbjct: 98 ASRSAIDSLNNRMLSQIWSHWSLLSAPSCAAQLDRAKRDIVRSRHLDSLYQR 149
>d1v64a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 108
Score = 25.7 bits (56), Expect = 6.1
Identities = 3/19 (15%), Positives = 9/19 (47%)
Query: 521 EEYNKQYEEYKKRSKENER 539
++Y + + + E E+
Sbjct: 72 KDYEVELLRFLESLPEEEQ 90
>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 101
Score = 25.2 bits (55), Expect = 8.1
Identities = 3/19 (15%), Positives = 7/19 (36%)
Query: 521 EEYNKQYEEYKKRSKENER 539
+Y + + K +R
Sbjct: 65 RQYKVHLDLWVKSLSPQDR 83
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.386
Gapped
Lambda K H
0.267 0.0443 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,950,652
Number of extensions: 92973
Number of successful extensions: 370
Number of sequences better than 10.0: 1
Number of HSP's gapped: 335
Number of HSP's successfully gapped: 43
Length of query: 540
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 450
Effective length of database: 1,171,896
Effective search space: 527353200
Effective search space used: 527353200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.7 bits)