Query psy16636
Match_columns 425
No_of_seqs 145 out of 1192
Neff 8.5
Searched_HMMs 46136
Date Fri Aug 16 18:07:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16636.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16636hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03028 Dynein_heavy: Dynein 100.0 1.1E-77 2.3E-82 642.8 28.1 387 8-421 312-707 (707)
2 COG5245 DYN1 Dynein, heavy cha 96.8 0.0008 1.7E-08 74.8 3.5 96 8-113 3058-3162(3164)
3 PF06115 DUF956: Domain of unk 37.3 4.8 0.00011 32.8 -2.1 20 9-28 46-65 (118)
4 KOG2163|consensus 26.9 3.7E+02 0.008 28.6 8.7 80 152-240 627-712 (719)
5 PF11585 Stomoxyn: Insect anti 19.3 1.5E+02 0.0033 18.6 2.7 25 192-216 5-29 (42)
6 PF06200 tify: tify domain; I 18.3 37 0.00079 21.6 -0.2 9 22-30 9-17 (36)
7 PF02885 Glycos_trans_3N: Glyc 17.0 1.5E+02 0.0032 21.3 2.8 48 208-265 6-53 (66)
8 KOG0936|consensus 16.7 73 0.0016 27.2 1.2 31 11-41 111-141 (182)
9 PF13559 DUF4129: Domain of un 15.9 1.9E+02 0.0041 20.6 3.2 33 12-44 39-71 (72)
10 PRK13680 hypothetical protein; 13.8 4.7E+02 0.01 21.4 5.0 43 361-405 68-110 (117)
No 1
>PF03028 Dynein_heavy: Dynein heavy chain and region D6 of dynein motor; InterPro: IPR004273 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella. The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits, intermediate size subunits and small subunits (see IPR001372 from INTERPRO). This family represents the C-terminal region of dynein heavy chain. The dynein heavy chain also exhibits ATPase activity and microtubule binding ability and acts as a motor for the movement of organelles and vesicles along microtubules. ; GO: 0003777 microtubule motor activity, 0007018 microtubule-based movement, 0030286 dynein complex; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=100.00 E-value=1.1e-77 Score=642.77 Aligned_cols=387 Identities=31% Similarity=0.574 Sum_probs=256.1
Q ss_pred CCCCChHHHHHHhhhccccCccCCHhHHHHHHHHHHHhcCccccCCCceeeeccCCCcccccCCCCCChHHHHHHHHhCC
Q psy16636 8 PEKIPWNALITLLSQSIYGGKIDNDFDQRLLGSFLSKLFTTRSFEADFALVANVDGATRHINMPDGTRRDHFLHWIESLP 87 (425)
Q Consensus 8 ~~~ipw~~l~~li~~~~YGGrv~d~~D~r~L~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~i~~lP 87 (425)
+++|||++|||++++++|||||+|+||+|+|++|+++||++++++++|.+++. ...+.+|.+.++++|.+||++||
T Consensus 312 ~~~ipw~~l~~l~~~i~YGGrv~d~~D~r~l~~~~~~~f~~~~~~~~~~l~~~----~~~~~~P~~~~~~~~~~~i~~lp 387 (707)
T PF03028_consen 312 PESIPWDALRYLIGEIVYGGRVDDEWDRRLLNTLLNQFFNPEIFDPDFQLSPD----SGSYSIPDSNSLEDYIEWIEQLP 387 (707)
T ss_dssp CCCTTHHHHHHHHHHTTTTTT-SSHHHHHHHHHHHHHHSSGGGGSTT-EEET-----TTTEE----SSHHHHHHHHCTS-
T ss_pred ccCCcHHHHHHHhhhceecCeeccHHHHHHHHHHHHHHcCchhhcchhhcccC----CCCccCCccccHHHHHHHHHhCC
Confidence 68899999999999999999999999999999999999999999999999862 24789999999999999999999
Q ss_pred CCCCCccccCChhHHHHHHHHHHHHHHHHHHhhccccccchhhhccccccccccccCCCchhhHHHHHHHHHHHHHHChH
Q psy16636 88 DRQTPSWLGLPNSAEKVLLTTRGTDLVAKLLKMQQLEDEDEFAYTEANENKTEERNVDGRPAWMRTLHNSASTWLELLPK 167 (425)
Q Consensus 88 ~~~~p~~~GL~~na~~~~~~~~~~~~l~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lP~ 167 (425)
+.|+|+|||||+||++.+++.++++++++|+.+++....... +.. ....+.+...+.++++.+|.
T Consensus 388 ~~~~p~~~GL~~na~~~~~~~~s~~ll~~l~~l~~~~~~~~~----~~~-----------~s~~~~~~~~i~~l~~~lp~ 452 (707)
T PF03028_consen 388 DEDPPEWFGLPPNAEISLQQQESRELLSSLLSLQPRESSSSG----GSS-----------KSREEQVLSLIKELLEKLPQ 452 (707)
T ss_dssp SS--CCCCTS-TTHHHHHHHHHHHHHHHHHHHCCCTTT-------------------------HHHHCT-----------
T ss_pred CCCCccccCCCccHHHHHHHHHHHHHHhhhhhcccccccccc----ccc-----------ccchhHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999987653210 000 01124566677788888887
Q ss_pred HHHHHH--h--hhccCCChhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCchhhhhccC
Q psy16636 168 ALQTLR--R--TVENIKDPLYRYFEREVSSGAALLRDVISDLEDVILICSGGKRQTNYHRLLLSDLVKGMLPARWCRYSV 243 (425)
Q Consensus 168 ~~~~~~--~--~~~~~~~pl~~fl~~E~~~~n~Ll~~I~~sL~~l~~~~~G~~~~t~~l~~~~~~L~~~~VP~~W~~~~~ 243 (425)
.++... . ......+|+.+|+.||++++|+|++.|+++|++|.++++|.+.||+++++++.+|..|+||+.|.+++|
T Consensus 453 ~~~~~~~~~~~~~~~~~~Pl~~fl~qE~~~~~~LL~~I~~sL~~L~~~lkG~~~~t~~l~~l~~~L~~~~VP~~W~~~~~ 532 (707)
T PF03028_consen 453 LFPIEEVKSKRPAENSNDPLNRFLEQEIERFNKLLQIIRQSLQELQKALKGEIKMTNELEALAQSLLKGQVPKSWLRYSY 532 (707)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------HHHHHHHHHHHHTS--GGG--S--
T ss_pred cCCHHHHhccCCccccCCceeeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHhCCCChhHHhcCC
Confidence 664321 1 123568999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccccceEEcCCCCChhHHHHHHHHHHHHHhCcccceeEEEEEEeecC
Q psy16636 244 PRGCTVIQWVTDFRLRIIQLQQVSLLVSQGGAKELKVYPVWLGGLFNPEAYITATRQCIAEANGWSLEELVLDVSITDCM 323 (425)
Q Consensus 244 p~~~~l~~wi~dL~~R~~~l~~w~~~~~~~g~~~~~~~~~~L~~ff~P~~fLtA~~Q~~Ar~~~~~ld~L~l~~~v~~~~ 323 (425)
|+.+++.+|++||.+|++|++.|... .| .|.+||||+||||++||||+||++||++++|+|+|+|.++|.+..
T Consensus 533 ~s~~~l~~Wl~dL~~Rv~~l~~w~~~---~~----~p~~~wLs~ff~P~aFLtAlrQ~~AR~~~~~ld~L~l~~~v~~~~ 605 (707)
T PF03028_consen 533 PSPKPLSSWLQDLIKRVEQLQRWASN---SG----QPKSFWLSGFFNPQAFLTALRQEYARKNKIPLDQLTLSFEVTSSE 605 (707)
T ss_dssp -SS--HHHHHHHHHHHHHHHHHHHH--------------B-GGGSS-HHHHHHHHHHHHHHHTT-----EE--EE-----
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhc---cC----CceEEecccccChHHHHHHHHHHHHHhcCcCchhcceeEEEEecc
Confidence 99999999999999999999999984 14 789999999999999999999999999999999999999998754
Q ss_pred CCCcC-CCCCceEEEeeEEEeeeeecCCceeecc----cccCCCCeeEEEEEEccccCCCCceeeeEeecCCCCCeEEEE
Q psy16636 324 EPEKI-NTDDCSFRVVGLKLQGAQCRNNELVLTS----TILMDLPVTLVRWVKVESETRQDKLSLPVYLNSTRTELLFNV 398 (425)
Q Consensus 324 ~~~~~-~~~~g~~~i~GL~LeGA~wd~~~~~l~~----~~~~~lP~i~i~~~~~~~~~~~~~y~cPlY~t~~R~~~l~~~ 398 (425)
.++.. .++.| ++|+||+||||+||.+..++.+ ..+..||++|++|+........+.|.||||+|+.|++.++++
T Consensus 606 ~~~~~~~~~~g-~~I~GL~leGA~wd~~~~~l~~~~~~~~~~~~pv~~~~~~~~~~~~~~~~y~~PvY~~~~R~~~~~v~ 684 (707)
T PF03028_consen 606 DENIRSPPEDG-VYIHGLFLEGARWDGQKGCLEESSPKSLYPPMPVIWLKPVQASPQSSDNSYECPVYKTSSREGLNFVF 684 (707)
T ss_dssp ---------EE-EEE-SEEEESSEEET-TCEE--SSSEEEES-EEEE-EE-----TTCGGCSEEEEEESSTT--S--EEE
T ss_pred ccccccccccc-eEEEeEEecccEeccccCcccCCCcccccccCceeEeccccccccCCCCEEECCceecCcCCCCeEEE
Confidence 33222 23455 5699999999999987655544 268899999999987644446678999999999999988888
Q ss_pred EEEcCCCCCCCeEEEcceeeccc
Q psy16636 399 DLNITSGQDPHSFYQRGVALLTS 421 (425)
Q Consensus 399 ~l~l~~~~~~~~Wi~rGval~~~ 421 (425)
.|++|++.++++||+|||||+||
T Consensus 685 ~l~l~~~~~~~~Wi~rGvAl~lq 707 (707)
T PF03028_consen 685 SLPLPTDEDPDHWILRGVALLLQ 707 (707)
T ss_dssp EEEE-B-T-HHHHHTTT-EEES-
T ss_pred EEEcCCCCCHHHHHHHhHHHhcC
Confidence 88888988999999999999996
No 2
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=96.84 E-value=0.0008 Score=74.82 Aligned_cols=96 Identities=18% Similarity=0.205 Sum_probs=71.6
Q ss_pred CCCCChHHHHHHhhhccccCccCCHhHHHHHHHHHHHhcCccccCCCceeeeccCCCcccccCCCC--C-------ChHH
Q psy16636 8 PEKIPWNALITLLSQSIYGGKIDNDFDQRLLGSFLSKLFTTRSFEADFALVANVDGATRHINMPDG--T-------RRDH 78 (425)
Q Consensus 8 ~~~ipw~~l~~li~~~~YGGrv~d~~D~r~L~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~P~~--~-------~~~~ 78 (425)
-+.+||...|.+|.+|+||||++-.-|..+++.||.+++..+.- -+.++ .+.+|+- . ....
T Consensus 3058 ln~~~wg~~rDlI~tIvyG~K~s~~~D~~vvdK~c~~~~a~~~~---sQi~~-------~V~~~dp~l~~~~~ee~~rsS 3127 (3164)
T COG5245 3058 LNARKWGNNRDLIFTIVYGKKHSLMEDSKVVDKYCRGYGAHETS---SQILA-------SVPGGDPELVKFHMEEMCRSS 3127 (3164)
T ss_pred cccccccchhhheeEeeecCccchhhhHHHHHHHHHHhccCccc---chhcc-------CCcCCChHHHHhhHHHHHHHh
Confidence 36899999999999999999999999999999999999976541 13333 2333331 1 1112
Q ss_pred HHHHHHhCCCCCCCccccCChhHHHHHHHHHHHHH
Q psy16636 79 FLHWIESLPDRQTPSWLGLPNSAEKVLLTTRGTDL 113 (425)
Q Consensus 79 ~~~~i~~lP~~~~p~~~GL~~na~~~~~~~~~~~~ 113 (425)
-...|..+|+..+|.|+-+|.+....+..-++.++
T Consensus 3128 a~~vigqlpd~~l~~wl~~p~~s~~~~~~vy~s~i 3162 (3164)
T COG5245 3128 AFGVIGQLPDLALCAWLMGPCDSEYLKAIVYSSRI 3162 (3164)
T ss_pred hhhhcccCcccccchhhcCchhHHHHHHHHHHHhh
Confidence 22344579999999999999999887776666554
No 3
>PF06115 DUF956: Domain of unknown function (DUF956); InterPro: IPR010360 This is a family of bacterial sequences with undetermined function.
Probab=37.26 E-value=4.8 Score=32.75 Aligned_cols=20 Identities=25% Similarity=0.659 Sum_probs=18.4
Q ss_pred CCCChHHHHHHhhhccccCc
Q psy16636 9 EKIPWNALITLLSQSIYGGK 28 (425)
Q Consensus 9 ~~ipw~~l~~li~~~~YGGr 28 (425)
=+|||+.+.+..+++.++||
T Consensus 46 IQIPW~eI~~V~a~V~fkgk 65 (118)
T PF06115_consen 46 IQIPWEEIDYVIASVSFKGK 65 (118)
T ss_pred EEeChhheeEEEEEEEECCC
Confidence 36999999999999999997
No 4
>KOG2163|consensus
Probab=26.87 E-value=3.7e+02 Score=28.63 Aligned_cols=80 Identities=18% Similarity=0.156 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHChHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHcCCCCC-----CHHHHHH
Q psy16636 152 RTLHNSASTWLELLPKALQTLRRTVENIKDPLYRYFEREVSSGAALLRDVISDLEDVIL-ICSGGKRQ-----TNYHRLL 225 (425)
Q Consensus 152 ~~l~~~~~~~~~~lP~~~~~~~~~~~~~~~pl~~fl~~E~~~~n~Ll~~I~~sL~~l~~-~~~G~~~~-----t~~l~~~ 225 (425)
..+..++...++..|..|.....+.+ ..|-..|+-.++++...+..+|.++.. +-.|+.++ ++++.++
T Consensus 627 ~eL~dLik~vL~~~p~vfa~~~e~~e------t~v~v~~w~pl~el~~mL~asLmeIt~rW~dgkGplaa~fsrsEVk~l 700 (719)
T KOG2163|consen 627 NELADLIKRVLEVVPNVFAYKEETKE------TDVCVREWFPLNELVFMLGASLMEITHRWFDGKGPLAAHFSRSEVKGL 700 (719)
T ss_pred HHHHHHHHHHHHhhhhhhcChhhccC------ccccHHHhccHHHHHHHhCchHhHHHHHHhcCCccHHhhccHHHHHHH
Confidence 46778888889999988753322111 234568999999999999999999874 77888654 5788999
Q ss_pred HHHHHcCCCchhhhh
Q psy16636 226 LSDLVKGMLPARWCR 240 (425)
Q Consensus 226 ~~~L~~~~VP~~W~~ 240 (425)
+++|+.+. .|+.
T Consensus 701 IkALFqDs---~wRa 712 (719)
T KOG2163|consen 701 IKALFQDS---QWRA 712 (719)
T ss_pred HHHHhhch---HHHH
Confidence 99999886 6654
No 5
>PF11585 Stomoxyn: Insect antimicrobial peptide, stomoxyn; InterPro: IPR021037 Stomoxyn is an insect antimicrobial peptide localised in the gut epithelium, which functions in killing a range of microorganisms, parasites and some viruses. In water, stomoxyn has a flexible random coil in structure, while in trifluoroethanol it adopts a stable helical structure. Structural similarities to the antimicrobial peptide cecropin A from Hyalophora cecropia suggest that it may function in a similar manner by disrupting the bacterial membrane []. ; PDB: 1ZRX_A.
Probab=19.34 E-value=1.5e+02 Score=18.58 Aligned_cols=25 Identities=0% Similarity=0.108 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHcCCC
Q psy16636 192 SSGAALLRDVISDLEDVILICSGGK 216 (425)
Q Consensus 192 ~~~n~Ll~~I~~sL~~l~~~~~G~~ 216 (425)
.+||++++.|+.++.+...+.+...
T Consensus 5 k~fn~~ikkikhtisetahvakd~a 29 (42)
T PF11585_consen 5 KHFNRFIKKIKHTISETAHVAKDTA 29 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHTT
T ss_pred HHHHHHHHHHHhhhHHHHHhhhhhh
Confidence 4799999999999988776555433
No 6
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=18.29 E-value=37 Score=21.59 Aligned_cols=9 Identities=33% Similarity=0.800 Sum_probs=5.9
Q ss_pred hccccCccC
Q psy16636 22 QSIYGGKID 30 (425)
Q Consensus 22 ~~~YGGrv~ 30 (425)
.|.|||+|.
T Consensus 9 TIfY~G~V~ 17 (36)
T PF06200_consen 9 TIFYGGQVC 17 (36)
T ss_pred EEEECCEEE
Confidence 467888763
No 7
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=16.99 E-value=1.5e+02 Score=21.29 Aligned_cols=48 Identities=6% Similarity=0.185 Sum_probs=29.0
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHcCCCchhhhhccCCCCCChHHHHHHHHHHHHHHHH
Q psy16636 208 VILICSGGKRQTNYHRLLLSDLVKGMLPARWCRYSVPRGCTVIQWVTDFRLRIIQLQQ 265 (425)
Q Consensus 208 l~~~~~G~~~~t~~l~~~~~~L~~~~VP~~W~~~~~p~~~~l~~wi~dL~~R~~~l~~ 265 (425)
|++..+|..+-.++.+.++..+..|++++. .++.|+.-+.-|-.-...
T Consensus 6 l~~l~~g~~Ls~~e~~~~~~~i~~g~~s~~----------qiaAfL~al~~kget~~E 53 (66)
T PF02885_consen 6 LKKLRDGEDLSREEAKAAFDAILDGEVSDA----------QIAAFLMALRMKGETPEE 53 (66)
T ss_dssp HHHHHTT----HHHHHHHHHHHHTTSS-HH----------HHHHHHHHHHHH---HHH
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHcCCCCHH----------HHHHHHHHHHHhCcCHHH
Confidence 345567777777899999999999998743 366777777666544443
No 8
>KOG0936|consensus
Probab=16.72 E-value=73 Score=27.22 Aligned_cols=31 Identities=13% Similarity=0.416 Sum_probs=23.9
Q ss_pred CChHHHHHHhhhccccCccCCHhHHHHHHHH
Q psy16636 11 IPWNALITLLSQSIYGGKIDNDFDQRLLGSF 41 (425)
Q Consensus 11 ipw~~l~~li~~~~YGGrv~d~~D~r~L~~l 41 (425)
+.|+.+.+++.|++.||-|-..-=-++..+.
T Consensus 111 F~~~k~h~iL~EiV~GGmVlETn~neIv~av 141 (182)
T KOG0936|consen 111 FNWQKVHAILAEIVMGGMVLETNMNEIVAAV 141 (182)
T ss_pred eeHHHHHHHHHHHHhCCeEEeccHHHHHHHH
Confidence 5699999999999999988665555544443
No 9
>PF13559 DUF4129: Domain of unknown function (DUF4129)
Probab=15.86 E-value=1.9e+02 Score=20.56 Aligned_cols=33 Identities=18% Similarity=0.272 Sum_probs=24.7
Q ss_pred ChHHHHHHhhhccccCccCCHhHHHHHHHHHHH
Q psy16636 12 PWNALITLLSQSIYGGKIDNDFDQRLLGSFLSK 44 (425)
Q Consensus 12 pw~~l~~li~~~~YGGrv~d~~D~r~L~~l~~~ 44 (425)
++..|-.+...+.|||+--+.-|.+.+...+++
T Consensus 39 ~~~~lt~~ye~~~Yg~~~~~~~~~~~~~~~~~~ 71 (72)
T PF13559_consen 39 ALEELTRLYERARYGGRPPSAEEFQRAREALRR 71 (72)
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhc
Confidence 356677788889999998887787776666553
No 10
>PRK13680 hypothetical protein; Provisional
Probab=13.76 E-value=4.7e+02 Score=21.38 Aligned_cols=43 Identities=19% Similarity=0.408 Sum_probs=30.6
Q ss_pred CCCeeEEEEEEccccCCCCceeeeEeecCCCCCeEEEEEEEcCCC
Q psy16636 361 DLPVTLVRWVKVESETRQDKLSLPVYLNSTRTELLFNVDLNITSG 405 (425)
Q Consensus 361 ~lP~i~i~~~~~~~~~~~~~y~cPlY~t~~R~~~l~~~~l~l~~~ 405 (425)
.-|++||..... ....+.|.+|+-..-.+.+.-+.+.++|..+
T Consensus 68 ~~PVaWin~~~i--tg~~~~~~VPltVRG~k~d~~Y~V~vdC~~g 110 (117)
T PRK13680 68 ADPVAWVNVQDI--TGKDDKWQVPLTVRGKSADIHYQVVVDCKAG 110 (117)
T ss_pred CCCeEEEccccc--ccccceEEEEEEEecccCceEEEEEEEccCC
Confidence 457665554221 2256789999999999999888888888643
Done!