Query psy16636
Match_columns 425
No_of_seqs 145 out of 1192
Neff 8.5
Searched_HMMs 29240
Date Fri Aug 16 18:08:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16636.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16636hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vkg_A Dynein heavy chain, cyt 100.0 3.1E-83 1.1E-87 747.5 22.2 404 1-423 2834-3243(3245)
2 4akg_A Glutathione S-transfera 99.8 1.1E-19 3.7E-24 213.4 8.8 110 8-122 2580-2693(2695)
3 3t98_A Nuclear pore complex pr 57.5 18 0.0006 24.0 4.4 29 181-209 21-49 (51)
4 4ard_A Capsid protein P27; vir 33.6 87 0.003 24.5 5.7 56 203-258 4-62 (116)
5 2kgf_A Capsid protein P27; ret 22.8 1.5E+02 0.0051 24.0 5.5 60 204-263 23-85 (140)
6 3vmx_A Voltage-gated hydrogen 21.4 60 0.002 21.1 2.2 15 185-199 28-42 (48)
7 1zl8_A LIN-7; heterodimer, alp 20.5 1.9E+02 0.0064 18.9 4.9 28 187-214 5-39 (53)
8 2v4x_A JSRV capsid, capsid pro 19.9 1.6E+02 0.0055 23.8 5.1 60 204-263 18-80 (140)
9 1zrx_A Stomoxyn; helical pepti 19.3 97 0.0033 18.6 2.7 24 192-215 5-28 (42)
10 3a2a_A Voltage-gated hydrogen 15.5 1.2E+02 0.0041 20.2 2.7 15 185-199 35-49 (58)
No 1
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=100.00 E-value=3.1e-83 Score=747.49 Aligned_cols=404 Identities=42% Similarity=0.768 Sum_probs=282.9
Q ss_pred CCCCCCCCCCCChHHHHHHhhhccccCccCCHhHHHHHHHHHHHhcCccccCCCceeeeccCCCcccccCCCCCChHHHH
Q psy16636 1 MGRTNLPPEKIPWNALITLLSQSIYGGKIDNDFDQRLLGSFLSKLFTTRSFEADFALVANVDGATRHINMPDGTRRDHFL 80 (425)
Q Consensus 1 ~~~~~i~~~~ipw~~l~~li~~~~YGGrv~d~~D~r~L~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~ 80 (425)
.||+||++++|||++|||++|+|+|||||||+||||+|++|+++||++++++++|.++++ ..|.+|++.++++|+
T Consensus 2834 ~~~~n~~~~~iPw~~L~yl~gei~YGGrVtDd~DrrlL~t~l~~~~~~~~~~~~~~~~~~-----~~~~~P~~~~~~~y~ 2908 (3245)
T 3vkg_A 2834 KGRSNIDPDKIPWIAVRTILGSTIYGGRIDNEFDMRLLYSFLEQLFTPSAFNPDFPLVPS-----IGLSVPEGTTRAHFM 2908 (3245)
T ss_dssp TTCSCCCTTTSCHHHHHHCCCCCCCSTTCCSSSHHHHHHHHHHHHSSGGGGSSSCEEEGG-----GTEECCCCSSHHHHH
T ss_pred ccccccCCCCCCHHHHHHHHhhcccCCccCCHHHHHHHHHHHHHHcCHhhcCCcccCCCC-----CCCCCCCCCCHHHHH
Confidence 378999999999999999999999999999999999999999999999999999999863 247799999999999
Q ss_pred HHHHhCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHhhccccccchhh-hcccccccccc-ccCCCchhhHHHHHHHH
Q psy16636 81 HWIESLPDRQTPSWLGLPNSAEKVLLTTRGTDLVAKLLKMQQLEDEDEFA-YTEANENKTEE-RNVDGRPAWMRTLHNSA 158 (425)
Q Consensus 81 ~~i~~lP~~~~p~~~GL~~na~~~~~~~~~~~~l~~l~~~q~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~l~~~~ 158 (425)
+||++||..++|+|||||+||+++++.++++.++++|+.+||..+.++.. +++++...... .++.+++. .+.+++
T Consensus 2909 ~~I~~LP~~~~P~~fGLh~NA~i~~~~~~s~~l~~~ll~lq~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~---~v~~~~ 2985 (3245)
T 3vkg_A 2909 KWIEALPEISTPIWLGLPENAESLLLSNKARKMINDLQKMQSSEEDGEDDQVSGSSKKESSSSSSEDKGKA---KLRATI 2985 (3245)
T ss_dssp HHHTTSCSCCCGGGGTSCTTHHHHHHHHHHHHHHHHHHHHHHTTTC---------------CHHHHHHHHH---C-----
T ss_pred HHHHhCCCCCCccccCCChhHHHHHHHHHHHHHHHHHHHhCCcccccccccccccccccccccccCCCcHH---HHHHHH
Confidence 99999999999999999999999999999999999999999975432110 11111000000 00112333 378889
Q ss_pred HHHHHHChHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCchhh
Q psy16636 159 STWLELLPKALQTLRRTVENIKDPLYRYFEREVSSGAALLRDVISDLEDVILICSGGKRQTNYHRLLLSDLVKGMLPARW 238 (425)
Q Consensus 159 ~~~~~~lP~~~~~~~~~~~~~~~pl~~fl~~E~~~~n~Ll~~I~~sL~~l~~~~~G~~~~t~~l~~~~~~L~~~~VP~~W 238 (425)
++|++++|+.++..++......+|+.+||.||+++||+|++.||+||.+|++|++|.++||+++++++.+|+.|+||+.|
T Consensus 2986 ~~~l~~lP~~~~~~~~~~~~~~~pl~~vl~QE~~r~n~Ll~~ir~sL~~L~~aikG~i~mS~~le~l~~sl~~~~VP~~W 3065 (3245)
T 3vkg_A 2986 TEWTKLLPKPLKQLKRTTQNIKDPLFRCFEREISTGGKLVKKITNDLANLLELISGNIKSTNYLRSLTTSISKGIVPKEW 3065 (3245)
T ss_dssp -----------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------------------
T ss_pred HHHHHhCccccchhhccccccCChHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCCcCCHHHHHHHHHHHcCCCchhh
Confidence 99999999988765555556679999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccccceEEcCCCCChhHHHHHHHHHHHHHhCcccceeEE-EE
Q psy16636 239 CRYSVPRGCTVIQWVTDFRLRIIQLQQVSLLVSQGGAKELKVYPVWLGGLFNPEAYITATRQCIAEANGWSLEELVL-DV 317 (425)
Q Consensus 239 ~~~~~p~~~~l~~wi~dL~~R~~~l~~w~~~~~~~g~~~~~~~~~~L~~ff~P~~fLtA~~Q~~Ar~~~~~ld~L~l-~~ 317 (425)
.+++||+.++|++|++||.+|++|++.|... | ...|.+|||||||||++||||+||++||+++||+|+|.| +|
T Consensus 3066 ~~~syps~k~L~~W~~dL~~R~~~l~~W~~~----~--~~~p~~~WLsgff~Pq~FLTA~~Q~~ARk~~~plD~l~l~~~ 3139 (3245)
T 3vkg_A 3066 KWYSVPETISLSVWISDFSKRMQQLSEISES----S--DYSSIQVWLGGLLNPEAYITATRQSASQLNGWSLENLRLHAS 3139 (3245)
T ss_dssp CCSCCCSSCCHHHHHHHHHHHHHHHHHHHHC-------------CCGGGSSCHHHHHHHHHHHHHHHTC------CCCBC
T ss_pred hcccCCCCCCHHHHHHHHHHHHHHHHHHHhc----C--CCCCceEecCCCcchHHHHHHHHHHHHHHhCCCCccceeeeE
Confidence 9999999999999999999999999999972 2 137899999999999999999999999999999999999 99
Q ss_pred EEeecCCCCcCCCCCceEEEeeEEEeeeeecCCceeecccccCCCCeeEEEEEEccccC---CCCceeeeEeecCCCCCe
Q psy16636 318 SITDCMEPEKINTDDCSFRVVGLKLQGAQCRNNELVLTSTILMDLPVTLVRWVKVESET---RQDKLSLPVYLNSTRTEL 394 (425)
Q Consensus 318 ~v~~~~~~~~~~~~~g~~~i~GL~LeGA~wd~~~~~l~~~~~~~lP~i~i~~~~~~~~~---~~~~y~cPlY~t~~R~~~ 394 (425)
+|++. +. .|++|+| |+|||||||+||.++++++++.++.||+++++|++....+ ..+.|.||||+|+.|+++
T Consensus 3140 ~V~~~---~~-~p~~G~y-I~GL~LeGA~WD~~~~~l~e~~~~~lPvi~l~~~~~~~~~~~~~~~~y~cPvYkt~~R~~~ 3214 (3245)
T 3vkg_A 3140 SLGKI---SS-EGGASFN-VKGMALEGAVWNNDQLTPTDILSTPISIATLTWKDKDDPIFNNSSSKLSVPVYLNETRSEL 3214 (3245)
T ss_dssp --------------CCEE-ECSCEEESCEECSSSEECCSSSEEECCCEEECCCC---CCTTSGGGEEEEEEESSTTCCCE
T ss_pred EEecC---CC-CCCceEE-EeCEEEeccEecCCCceecCcccCCCCceeEEEeecccccccCCCCeEEcceEecCCCCCE
Confidence 98752 11 2678876 9999999999999999999988999999999998754332 245699999999999999
Q ss_pred EEEEEEEcCCCCCCCeEEEcceeecccCC
Q psy16636 395 LFNVDLNITSGQDPHSFYQRGVALLTSTS 423 (425)
Q Consensus 395 l~~~~l~l~~~~~~~~Wi~rGval~~~~~ 423 (425)
++++.++++++.+|+|||+|||||+|+++
T Consensus 3215 l~~~~l~~~t~~~~~~Wi~rGVALl~~~~ 3243 (3245)
T 3vkg_A 3215 LFSIDLPYDQSTSKQNWYQRSVSISSWKS 3243 (3245)
T ss_dssp EEEEEEEBCTTSCHHHHHTTTCEEESCCC
T ss_pred EEEEEEECCCCCCHhHHHHHHHHHHcCCc
Confidence 99999999999999999999999999975
No 2
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.78 E-value=1.1e-19 Score=213.39 Aligned_cols=110 Identities=19% Similarity=0.387 Sum_probs=94.2
Q ss_pred CCCCChHHHHHHhhhccccCccCCHhHHHHHHHHHHHhcCccccCCCceeeeccCC-Cccc-ccCCCCCChHHHHHHHHh
Q psy16636 8 PEKIPWNALITLLSQSIYGGKIDNDFDQRLLGSFLSKLFTTRSFEADFALVANVDG-ATRH-INMPDGTRRDHFLHWIES 85 (425)
Q Consensus 8 ~~~ipw~~l~~li~~~~YGGrv~d~~D~r~L~~l~~~~f~~~~~~~~~~~~~~~~~-~~~~-~~~P~~~~~~~~~~~i~~ 85 (425)
+++|||++|||++|+|+|||||||+||||+|++|+++||++ +++|.+.++..- .... |.+|. ++++|.+||++
T Consensus 2580 ~~~ipw~~l~yl~ge~~YGGrvtd~~Drr~l~t~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~p~--~~~~y~~~i~~ 2654 (2695)
T 4akg_A 2580 TNNIPWAQVRDHIATIVYGGKIDEEKDLEVVAKLCAHVFCG---SDNLQIVPGVRIPQPLLQQSEEE--ERARLTAILSN 2654 (2695)
T ss_dssp SCSGGGHHHHHHHHHTTSTTTCCSHHHHHHHHHHHHHHTCC---SSBCCSSSSCCCBCCCTTCCHHH--HHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHHcCC---CCCcccCCCcCcCCCCccCCCCC--CHHHHHHHHHh
Confidence 47899999999999999999999999999999999999999 566777653110 0011 34444 68999999999
Q ss_pred C--CCCCCCccccCChhHHHHHHHHHHHHHHHHHHhhcc
Q psy16636 86 L--PDRQTPSWLGLPNSAEKVLLTTRGTDLVAKLLKMQQ 122 (425)
Q Consensus 86 l--P~~~~p~~~GL~~na~~~~~~~~~~~~l~~l~~~q~ 122 (425)
| |..++|+|||||+||+++++.++++.++++++.+|.
T Consensus 2655 l~~P~~~~p~~fGlh~NA~i~~~~~~~~~~~~~il~i~~ 2693 (2695)
T 4akg_A 2655 TIEPADSLSSWLQLPRESILNYERLQAKEVASSTEQLLQ 2693 (2695)
T ss_dssp CCCCTTHHHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCChhhcCCChhHHHHHHHHHHHHHHHHHHHHHh
Confidence 9 999999999999999999999999999999998863
No 3
>3t98_A Nuclear pore complex protein NUP54; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus}
Probab=57.49 E-value=18 Score=24.00 Aligned_cols=29 Identities=17% Similarity=0.265 Sum_probs=25.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy16636 181 DPLYRYFEREVSSGAALLRDVISDLEDVI 209 (425)
Q Consensus 181 ~pl~~fl~~E~~~~n~Ll~~I~~sL~~l~ 209 (425)
+-+..||.+.-+-+..|+.+|++|+++|.
T Consensus 21 ~eik~~L~~QQ~g~~~Li~ivk~DleDL~ 49 (51)
T 3t98_A 21 REIKQHLKQQQEGLSHLISIIKDDLEDIK 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Confidence 34567898999999999999999999885
No 4
>4ard_A Capsid protein P27; viral protein, retrovirus, GAG; 7.00A {Mason-pfizer monkey virus}
Probab=33.55 E-value=87 Score=24.51 Aligned_cols=56 Identities=14% Similarity=0.297 Sum_probs=40.5
Q ss_pred HhHHHHHHHHcCCCCCCHHHHHHHHHHHcCC-Cchhhhhcc--CCCCCChHHHHHHHHH
Q psy16636 203 SDLEDVILICSGGKRQTNYHRLLLSDLVKGM-LPARWCRYS--VPRGCTVIQWVTDFRL 258 (425)
Q Consensus 203 ~sL~~l~~~~~G~~~~t~~l~~~~~~L~~~~-VP~~W~~~~--~p~~~~l~~wi~dL~~ 258 (425)
+.|++|+++|.-...-++....+++.|.... +|..|...+ .-+.-..-.|.....+
T Consensus 4 k~iKdLKka~t~YG~ts~y~~~lL~~la~~~LtP~DWkslar~~L~pgq~llW~se~~e 62 (116)
T 4ard_A 4 AVIKELKTAASQYGATAPYTLAIVESVADNWLTPTDWNTLVRAVLSGGDHLLWKSEFFE 62 (116)
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhccChHhHHHHHHHHcCchhHHHHHHHHHH
Confidence 3578888898877788899999999998877 799999854 2222234566665544
No 5
>2kgf_A Capsid protein P27; retrovirus capsid protein, N-terminal core domain (SCOP), viral protein; NMR {Mason-pfizer monkey virus}
Probab=22.78 E-value=1.5e+02 Score=23.98 Aligned_cols=60 Identities=15% Similarity=0.281 Sum_probs=43.6
Q ss_pred hHHHHHHHHcCCCCCCHHHHHHHHHHHcCCC-chhhhhcc--CCCCCChHHHHHHHHHHHHHH
Q psy16636 204 DLEDVILICSGGKRQTNYHRLLLSDLVKGML-PARWCRYS--VPRGCTVIQWVTDFRLRIIQL 263 (425)
Q Consensus 204 sL~~l~~~~~G~~~~t~~l~~~~~~L~~~~V-P~~W~~~~--~p~~~~l~~wi~dL~~R~~~l 263 (425)
-|++|+.+|+-..+-++....++.+|..+.. |..|...+ .-+.-....|-....++++..
T Consensus 23 ~iKeLk~Av~~YGp~APyT~~lle~la~~~LtP~DW~~lara~Ls~gqyllWkse~~d~~q~~ 85 (140)
T 2kgf_A 23 VIKELKTAASQYGATAPYTLAIVESVADNWLTPTDWNTLVRAVLSGGDHLLWKSEFFENCRDT 85 (140)
T ss_dssp HHHHHHHHHHHTCTTSHHHHHHHHHHHTSBCCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHhCCCChHHHHHHHHHHcCcchhHHHHHHHHHHHHHH
Confidence 3677788888788888888999999998775 99999853 233345666776666666543
No 6
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=21.37 E-value=60 Score=21.07 Aligned_cols=15 Identities=27% Similarity=0.251 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHH
Q psy16636 185 RYFEREVSSGAALLR 199 (425)
Q Consensus 185 ~fl~~E~~~~n~Ll~ 199 (425)
.-..||++++|+||+
T Consensus 28 ~~~eQEieRL~~LLk 42 (48)
T 3vmx_A 28 SEKEQEIERLNKLLK 42 (48)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH
Confidence 345699999999985
No 7
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=20.52 E-value=1.9e+02 Score=18.94 Aligned_cols=28 Identities=21% Similarity=0.298 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHh-------HHHHHHHHcC
Q psy16636 187 FEREVSSGAALLRDVISD-------LEDVILICSG 214 (425)
Q Consensus 187 l~~E~~~~n~Ll~~I~~s-------L~~l~~~~~G 214 (425)
|.+.+.+.-.|+..++++ |+.|+++++.
T Consensus 5 L~RDv~RaiELle~lq~sgevp~~KL~aLq~VLqS 39 (53)
T 1zl8_A 5 LERDVQRILELMEHVQKTGEVNNAKLASLQQVLQS 39 (53)
T ss_dssp HHHHHHHHHHHHHHHGGGSSSTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Confidence 456666666666666554 4445544443
No 8
>2v4x_A JSRV capsid, capsid protein P27; virion, zinc-finger, metal-binding, CAPS protein, structural protein, viral nucleoprotein; HET: MSE; 1.5A {Jaagsiekte sheep retrovirus}
Probab=19.89 E-value=1.6e+02 Score=23.80 Aligned_cols=60 Identities=17% Similarity=0.402 Sum_probs=43.0
Q ss_pred hHHHHHHHHcCCCCCCHHHHHHHHHHHcCCC-chhhhhcc--CCCCCChHHHHHHHHHHHHHH
Q psy16636 204 DLEDVILICSGGKRQTNYHRLLLSDLVKGML-PARWCRYS--VPRGCTVIQWVTDFRLRIIQL 263 (425)
Q Consensus 204 sL~~l~~~~~G~~~~t~~l~~~~~~L~~~~V-P~~W~~~~--~p~~~~l~~wi~dL~~R~~~l 263 (425)
-|++|+.+|+-..+-++....++.+|...-. |..|.... .-+.-....|-......++..
T Consensus 18 ~IkeLk~Av~~YGp~APyT~a~le~La~~~LtP~DW~~lara~Ls~gqyllWkse~~d~~q~~ 80 (140)
T 2v4x_A 18 QLKELKIACSQYGPTAPFTIAMIENLGTQALPPNDWKQTARACLSGGDYLLWKSEFFEQCARI 80 (140)
T ss_dssp HHHHHHHHHHHTCTTSHHHHHHHHHHHTSCCCHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHhCCCChHHHHHHHHHHcCcchhHHHHHHHHHHHHHH
Confidence 3677788888788888999999999988775 99999863 223335566666666555544
No 9
>1zrx_A Stomoxyn; helical peptide in TFE, antimicrobial protein, antibiotic; NMR {Synthetic}
Probab=19.34 E-value=97 Score=18.58 Aligned_cols=24 Identities=8% Similarity=0.138 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHcCC
Q psy16636 192 SSGAALLRDVISDLEDVILICSGG 215 (425)
Q Consensus 192 ~~~n~Ll~~I~~sL~~l~~~~~G~ 215 (425)
.+||++++.|+.++.+...+.+..
T Consensus 5 k~fn~~ikkikhtisetahvakd~ 28 (42)
T 1zrx_A 5 KHFNKLVKKVKHTISETAHVAKDT 28 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHT
T ss_pred HHHHHHHHHHHhhhHHHHHhhhhh
Confidence 479999999999998877655543
No 10
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=15.49 E-value=1.2e+02 Score=20.16 Aligned_cols=15 Identities=33% Similarity=0.295 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHH
Q psy16636 185 RYFEREVSSGAALLR 199 (425)
Q Consensus 185 ~fl~~E~~~~n~Ll~ 199 (425)
..-.||++++++||+
T Consensus 35 ~e~eQEieRL~~LLk 49 (58)
T 3a2a_A 35 SEKEQEIERLNKLLR 49 (58)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345699999999986
Done!