Query psy16636
Match_columns 425
No_of_seqs 145 out of 1192
Neff 8.5
Searched_HMMs 13730
Date Fri Aug 16 18:08:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16636.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/16636hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2elca1 a.46.2.1 (A:1-52) Anth 35.5 18 0.0013 22.3 3.5 32 207-238 3-34 (52)
2 d1bdsa_ g.9.1.1 (A:) BDs-I def 27.7 5.1 0.00037 22.7 -0.3 10 408-417 13-22 (43)
3 d1zl8a1 a.194.1.1 (A:4-53) Lin 23.7 72 0.0053 19.1 4.9 28 187-214 2-36 (50)
4 d1khda1 a.46.2.1 (A:12-80) Ant 23.6 30 0.0022 22.4 3.1 31 208-238 6-36 (69)
5 d1in4a1 a.4.5.11 (A:255-329) H 21.5 24 0.0017 23.7 2.2 15 31-45 4-18 (75)
6 d1y74a1 a.194.1.1 (A:17-73) Li 20.5 81 0.0059 19.4 4.3 7 192-198 8-14 (57)
7 d1em9a_ a.73.1.1 (A:) RSV caps 19.9 38 0.0028 25.8 3.4 57 204-260 18-77 (147)
8 d1o17a1 a.46.2.1 (A:1-70) Anth 18.6 51 0.0037 21.2 3.5 41 209-259 8-48 (70)
9 d2tpta1 a.46.2.1 (A:1-70) Thym 17.2 51 0.0037 21.2 3.2 41 209-259 9-49 (70)
10 d1brwa1 a.46.2.1 (A:1-70) Pyri 14.6 71 0.0052 20.4 3.4 42 208-259 7-48 (70)
No 1
>d2elca1 a.46.2.1 (A:1-52) Anthranilate phosphoribosyltransferase (TrpD) {Thermus thermophilus [TaxId: 274]}
Probab=35.47 E-value=18 Score=22.29 Aligned_cols=32 Identities=13% Similarity=0.044 Sum_probs=27.4
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHcCCCchhh
Q psy16636 207 DVILICSGGKRQTNYHRLLLSDLVKGMLPARW 238 (425)
Q Consensus 207 ~l~~~~~G~~~~t~~l~~~~~~L~~~~VP~~W 238 (425)
.|.+.+.|..+-.++.+.+++.+.+|+|++.=
T Consensus 3 ~l~kl~~g~~Lt~~ea~~~~~~im~G~~~~~q 34 (52)
T d2elca1 3 AVKKAILGEVLEEEEAYEVMRALMAGEVSPVR 34 (52)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcCCCCHHH
Confidence 46678889988889999999999999988753
No 2
>d1bdsa_ g.9.1.1 (A:) BDs-I defensin {Sea anemone (Anemonia sulcata) [TaxId: 6108]}
Probab=27.69 E-value=5.1 Score=22.71 Aligned_cols=10 Identities=20% Similarity=0.328 Sum_probs=8.6
Q ss_pred CCeEEEccee
Q psy16636 408 PHSFYQRGVA 417 (425)
Q Consensus 408 ~~~Wi~rGva 417 (425)
-+.||+||+|
T Consensus 13 gdlwilrgtc 22 (43)
T d1bdsa_ 13 GDLWILRGTC 22 (43)
T ss_dssp CEEECSCSSC
T ss_pred CcEEEEeccc
Confidence 4789999987
No 3
>d1zl8a1 a.194.1.1 (A:4-53) Lin-7 {Caenorhabditis elegans [TaxId: 6239]}
Probab=23.68 E-value=72 Score=19.11 Aligned_cols=28 Identities=21% Similarity=0.298 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHh-------HHHHHHHHcC
Q psy16636 187 FEREVSSGAALLRDVISD-------LEDVILICSG 214 (425)
Q Consensus 187 l~~E~~~~n~Ll~~I~~s-------L~~l~~~~~G 214 (425)
|.+.+.|.-.||..++++ |+.|++++..
T Consensus 2 L~rDv~RaieLle~Lq~sgevp~~KL~aLqkVLqS 36 (50)
T d1zl8a1 2 LERDVQRILELMEHVQKTGEVNNAKLASLQQVLQS 36 (50)
T ss_dssp HHHHHHHHHHHHHHHGGGSSSTHHHHHHHHHHHSC
T ss_pred hhhHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 345556666666655544 4455554443
No 4
>d1khda1 a.46.2.1 (A:12-80) Anthranilate phosphoribosyltransferase (TrpD) {Pectobacterium carotovorum [TaxId: 554]}
Probab=23.62 E-value=30 Score=22.37 Aligned_cols=31 Identities=13% Similarity=0.158 Sum_probs=25.5
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHcCCCchhh
Q psy16636 208 VILICSGGKRQTNYHRLLLSDLVKGMLPARW 238 (425)
Q Consensus 208 l~~~~~G~~~~t~~l~~~~~~L~~~~VP~~W 238 (425)
+.+...|..+-.++.+.++..++.|.+|+.=
T Consensus 6 l~kl~~g~~Ls~ee~~~~~~~i~~g~~~d~q 36 (69)
T d1khda1 6 LEKLFKSQSMTQEESHQLFAAIVRGELEDSQ 36 (69)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHTTTCSCHHH
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHcCCCCHHH
Confidence 4456778888889999999999999988753
No 5
>d1in4a1 a.4.5.11 (A:255-329) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}
Probab=21.50 E-value=24 Score=23.66 Aligned_cols=15 Identities=20% Similarity=0.665 Sum_probs=13.5
Q ss_pred CHhHHHHHHHHHHHh
Q psy16636 31 NDFDQRLLGSFLSKL 45 (425)
Q Consensus 31 d~~D~r~L~~l~~~~ 45 (425)
|..|+++|+++++.|
T Consensus 4 d~~Dr~yL~~l~~~f 18 (75)
T d1in4a1 4 DEFDRKILKTIIEIY 18 (75)
T ss_dssp CHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHh
Confidence 789999999999875
No 6
>d1y74a1 a.194.1.1 (A:17-73) Lin-7 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.49 E-value=81 Score=19.43 Aligned_cols=7 Identities=43% Similarity=0.506 Sum_probs=2.5
Q ss_pred HHHHHHH
Q psy16636 192 SSGAALL 198 (425)
Q Consensus 192 ~~~n~Ll 198 (425)
.|.-.|+
T Consensus 8 ~RaieLl 14 (57)
T d1y74a1 8 SRAVELL 14 (57)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 7
>d1em9a_ a.73.1.1 (A:) RSV capsid protein {Rous sarcoma virus [TaxId: 11886]}
Probab=19.95 E-value=38 Score=25.79 Aligned_cols=57 Identities=7% Similarity=0.094 Sum_probs=39.4
Q ss_pred hHHHHHHHHcCCCCCCHHHHHHHHHHHcCC-Cchhhhhcc--CCCCCChHHHHHHHHHHH
Q psy16636 204 DLEDVILICSGGKRQTNYHRLLLSDLVKGM-LPARWCRYS--VPRGCTVIQWVTDFRLRI 260 (425)
Q Consensus 204 sL~~l~~~~~G~~~~t~~l~~~~~~L~~~~-VP~~W~~~~--~p~~~~l~~wi~dL~~R~ 260 (425)
.|++|.++++-....++-...++++|..+. +|..|.... ..+.-....|-....+++
T Consensus 18 ~ikeL~~av~~yG~~spft~~lle~l~~~~l~P~Dw~~l~r~vLs~~qyllWks~w~~~~ 77 (147)
T d1em9a_ 18 LITRLADTVRTKGLRSPITMAEVEALMSSPLLPHDVTNLMRVILGPAPYALWMDAWGVQL 77 (147)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHTSSCCCHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHhcCCcCHHHHHHHHHHHcCchHHHHHHHHHHHHH
Confidence 467778888877788888888898887766 599999853 333334445555554444
No 8
>d1o17a1 a.46.2.1 (A:1-70) Anthranilate phosphoribosyltransferase (TrpD) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=18.57 E-value=51 Score=21.17 Aligned_cols=41 Identities=15% Similarity=0.249 Sum_probs=30.1
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHcCCCchhhhhccCCCCCChHHHHHHHHHH
Q psy16636 209 ILICSGGKRQTNYHRLLLSDLVKGMLPARWCRYSVPRGCTVIQWVTDFRLR 259 (425)
Q Consensus 209 ~~~~~G~~~~t~~l~~~~~~L~~~~VP~~W~~~~~p~~~~l~~wi~dL~~R 259 (425)
.+...|..+..++.+.++..+..|++|+.= ++.|+.-+..|
T Consensus 8 ~~l~~g~~Ls~~e~~~~~~~i~~g~~s~~q----------iaafL~al~~k 48 (70)
T d1o17a1 8 KKLINKSDLEINEAEELAKAIIRGEVPEIL----------VSAILVALRMK 48 (70)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHTTCSCHHH----------HHHHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHHHHHHcCCCCHHH----------HHHHHHHHHHc
Confidence 345678888889999999999999987653 44555555444
No 9
>d2tpta1 a.46.2.1 (A:1-70) Thymidine phosphorylase {Escherichia coli [TaxId: 562]}
Probab=17.17 E-value=51 Score=21.23 Aligned_cols=41 Identities=5% Similarity=0.042 Sum_probs=30.5
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHcCCCchhhhhccCCCCCChHHHHHHHHHH
Q psy16636 209 ILICSGGKRQTNYHRLLLSDLVKGMLPARWCRYSVPRGCTVIQWVTDFRLR 259 (425)
Q Consensus 209 ~~~~~G~~~~t~~l~~~~~~L~~~~VP~~W~~~~~p~~~~l~~wi~dL~~R 259 (425)
++...|..+..++.+.+++.+.+|++++.= ++.|+..+..|
T Consensus 9 ~k~~~g~~Ls~~E~~~~~~~i~~g~~~d~q----------i~afL~al~~k 49 (70)
T d2tpta1 9 RKKRDGHALSDEEIRFFINGIRDNTISEGQ----------IAALAMTIFFH 49 (70)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHTCSCHHH----------HHHHHHHHHHH
T ss_pred HHHHCCCCcCHHHHHHHHHHHHcCCchHHH----------HHHHHHHHHHc
Confidence 345678888889999999999999987653 45566655544
No 10
>d1brwa1 a.46.2.1 (A:1-70) Pyrimidine nucleoside phosphorylase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=14.63 E-value=71 Score=20.42 Aligned_cols=42 Identities=10% Similarity=0.110 Sum_probs=31.8
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHcCCCchhhhhccCCCCCChHHHHHHHHHH
Q psy16636 208 VILICSGGKRQTNYHRLLLSDLVKGMLPARWCRYSVPRGCTVIQWVTDFRLR 259 (425)
Q Consensus 208 l~~~~~G~~~~t~~l~~~~~~L~~~~VP~~W~~~~~p~~~~l~~wi~dL~~R 259 (425)
+.+...|..+..++.+.++..+..|++++.= ++.|+..+..|
T Consensus 7 i~k~~~g~~Ls~~E~~~~~~~i~~g~~s~~q----------i~afL~al~~k 48 (70)
T d1brwa1 7 IAKKRDGKALTKEEIEWIVRGYTNGDIPDYQ----------MSALAMAIYFR 48 (70)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHTTSSCHHH----------HHHHHHHHHHH
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHcCCCCHHH----------HHHHHHHHHHc
Confidence 3456678888889999999999999987643 45666666555
Done!