RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16636
(425 letters)
>gnl|CDD|217325 pfam03028, Dynein_heavy, Dynein heavy chain and region D6 of dynein
motor. This family represents the C-terminal region of
dynein heavy chain. The chain also contains ATPase
activity and microtubule binding ability and acts as a
motor for the movement of organelles and vesicles along
microtubules. Dynein is also involved in cilia and
flagella movement. The dynein subunit consists of at
least two heavy chains and a number of intermediate and
light chains. The 380 kDa motor unit of dynein belongs
to the AAA class of chaperone-like ATPases. The core of
the 380 kDa motor unit contains a concatenated chain of
six AAA modules, of which four correspond to the ATP
binding sites with P-loop signatures described
previously, and two are modules in which the P loop has
been lost in evolution. This C-terminal domain carries
the D6 region of the dynein motor where the P-loop has
been lost in evolution but the general structure of a
potential ATP binding site appears to be retained.
Length = 706
Score = 343 bits (881), Expect = e-111
Identities = 125/416 (30%), Positives = 192/416 (46%), Gaps = 27/416 (6%)
Query: 8 PEKIPWNALITLLSQSIYGGKIDNDFDQRLLGSFLSKLFTTRSFEADFALVANVDGATRH 67
P+K+PW L L + +YGG+I +D+D+RLL ++L + FT R F+ + L G
Sbjct: 312 PDKVPWEDLRYLFGEIMYGGRITDDWDRRLLRTYLEEFFTPRLFDPELELAPGDLG---- 367
Query: 68 INMPDGTRRDHFLHWIESLPDRQTPSWLGLPNSAEKVLLTTRGTDLVAKLLKMQQLEDED 127
+P GT + +L +IE LP +P W GL +AE LT + L+ LL++Q E
Sbjct: 368 FAVPPGTDYEGYLQYIEELPPESSPEWYGLHPNAEIGFLTQQTEKLIRTLLELQPREAGG 427
Query: 128 EFAYTEANENKTEERNVDGRPAWMRTLHNSASTWLELLPKALQTLRRTVENIKDPLYRYF 187
+ E + +R + +L P L+RT E IKDPL+R
Sbjct: 428 SGGSGVSRE--------EVVKQVLRDIL---EKLPKLFPIEEIKLKRT-EEIKDPLFRVL 475
Query: 188 EREVSSGAALLRDVISDLEDVILICSGGKRQTNYHRLLLSDLVKGMLPARWCRYSVPRGC 247
+E+ LL+++ L+++ L G TN L L KG +PA W + + P
Sbjct: 476 FQEIERMNKLLKEIRRSLKELDLGLKGELTMTNDLEDLAKALFKGRVPASWAKLAYPSLK 535
Query: 248 TVIQWVTDFRLRIIQLQQVSLLVSQGGAKELKVYPVWLGGLFNPEAYITATRQCIAEANG 307
+ WVTD RI QLQ + K VWL G FNP++++TA Q +A N
Sbjct: 536 PLGSWVTDLLRRIRQLQDWT-------EDFGKPKTVWLSGFFNPQSFLTAIMQSVARKNK 588
Query: 308 WSLEELVLDVSITDCMEPEKINTDDCSFRVVGLKLQGAQCRNNELVLTSTILMDL----P 363
W L++L L +T + E + F V GL L+GA+ +L + +L P
Sbjct: 589 WPLDKLCLQTDVTKKEKEEFDSAPRDGFYVHGLFLEGARWDGQNGLLLESRPKELFSPMP 648
Query: 364 VTLVRWVKVESETRQDKLSLPVYLNSTRTELLFNVDLNITSGQDPHSFYQRGVALL 419
V V+ V + + + PVY TR + + + + P + GVALL
Sbjct: 649 VIWVKAVPADKQEEKSVYECPVYKTETRGGTTYVFTFLLKTKEPPSKWILAGVALL 704
>gnl|CDD|227570 COG5245, DYN1, Dynein, heavy chain [Cytoskeleton].
Length = 3164
Score = 32.7 bits (74), Expect = 0.50
Identities = 20/94 (21%), Positives = 31/94 (32%), Gaps = 1/94 (1%)
Query: 9 EKIPWNALITLLSQSIYGGKIDNDFDQRLLGSFLSKLFTTRSFEADFALVANVDGATRHI 68
W L+ +YG K D +++ + + A V D
Sbjct: 3059 NARKWGNNRDLIFTIVYGKKHSLMEDSKVVDKYCRGYGAHETSSQILASVPGGDPELVKF 3118
Query: 69 NMPDGTRRDHFLHWIESLPDRQTPSWLGLPNSAE 102
+M + R F I LPD +WL P +E
Sbjct: 3119 HMEEMCRSSAFGV-IGQLPDLALCAWLMGPCDSE 3151
>gnl|CDD|233617 TIGR01884, cas_HTH, CRISPR locus-related DNA-binding protein. Most
but not all examples of this family are associated with
CRISPR loci, a combination of DNA repeats and
characteristic proteins encoded near the repeat cluster.
The C-terminal region of this protein is homologous to
DNA-binding helix-turn-helix domains with predicted
transcriptional regulatory activity [Regulatory
functions, DNA interactions, Mobile and extrachromosomal
element functions, Other].
Length = 203
Score = 28.5 bits (64), Expect = 5.4
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 170 QTLRRTVENIKDPLYRYFE-REVSSGAALLRDVISDLED--VILICSGGKRQTNYHRLLL 226
+ N+ + + E ++V + D+I + + VI+ SGG R LLL
Sbjct: 49 AIISDLYGNLVEGTIKEIELKDVPLALRQISDIIKEEPEPGVIINLSGGMRILILILLLL 108
Query: 227 SDLVK 231
+ LVK
Sbjct: 109 AILVK 113
>gnl|CDD|216250 pfam01026, TatD_DNase, TatD related DNase. This family of proteins
are related to a large superfamily of metalloenzymes.
TatD, a member of this family has been shown
experimentally to be a DNase enzyme.
Length = 255
Score = 28.8 bits (65), Expect = 5.7
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 281 YPVWLGGLFNPEAYITATRQCIAEANGWSLEEL 313
PV G N AY+ + +AE G S EE+
Sbjct: 210 APVPYRGKRNEPAYVPYVAEKLAELKGISEEEV 242
>gnl|CDD|205206 pfam13025, DUF3886, Protein of unknown function (DUF3886). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are approximately 90 amino acids in length.
There are two completely conserved L residues that may
be functionally important.
Length = 70
Score = 26.1 bits (58), Expect = 7.5
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 112 DLVAKLLKM-QQLEDEDEFAYTEANENKTEER 142
DL+AKL ++L+ E+E E K EER
Sbjct: 17 DLLAKLKAKKKELKAEEEKREEEEEARKREER 48
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.135 0.407
Gapped
Lambda K H
0.267 0.0715 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 21,760,286
Number of extensions: 2095728
Number of successful extensions: 1604
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1599
Number of HSP's successfully gapped: 10
Length of query: 425
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 325
Effective length of database: 6,502,202
Effective search space: 2113215650
Effective search space used: 2113215650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.9 bits)