RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16636
         (425 letters)



>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit
           {Rattus norvegicus [TaxId: 10116]}
          Length = 328

 Score = 31.7 bits (71), Expect = 0.14
 Identities = 17/99 (17%), Positives = 32/99 (32%), Gaps = 3/99 (3%)

Query: 25  YGGKIDNDFDQRLLGSFLSK---LFTTRSFEADFALVANVDGATRHINMPDGTRRDHFLH 81
           Y   +D      +L S + +    F           +A V G     +  D    +    
Sbjct: 207 YDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPR 266

Query: 82  WIESLPDRQTPSWLGLPNSAEKVLLTTRGTDLVAKLLKM 120
           + + L       W    +S  + L++    D + KLL+ 
Sbjct: 267 FNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRY 305


>d1h6za1 c.1.12.2 (A:538-903) Pyruvate phosphate dikinase,
           C-terminal domain {Trypanosoma brucei [TaxId: 5691]}
          Length = 366

 Score = 28.2 bits (62), Expect = 1.9
 Identities = 9/85 (10%), Positives = 21/85 (24%)

Query: 119 KMQQLEDEDEFAYTEANENKTEERNVDGRPAWMRTLHNSASTWLELLPKALQTLRRTVEN 178
              +    D+    +  +     R + G P  +R L      ++     A   L + +  
Sbjct: 72  ASGRKAALDKLLPIQRADFVGILRAMRGLPVTIRLLDPPLHEFVPHDAAAQFELAQKLGM 131

Query: 179 IKDPLYRYFEREVSSGAALLRDVIS 203
             + +             L      
Sbjct: 132 PAEKVRNRVNALHELNPMLGHRGCR 156


>d1j6oa_ c.1.9.12 (A:) Hypothetical protein TM0667 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 260

 Score = 28.0 bits (61), Expect = 2.3
 Identities = 6/33 (18%), Positives = 12/33 (36%)

Query: 281 YPVWLGGLFNPEAYITATRQCIAEANGWSLEEL 313
            P    G  N   Y+    + I++  G    ++
Sbjct: 211 PPQPFRGKRNEPKYLKYVVETISQVLGVPEAKV 243


>d1mw5a_ d.259.1.1 (A:) Hypothetical protein HI1480 {Haemophilus
           influenzae [TaxId: 727]}
          Length = 162

 Score = 26.6 bits (58), Expect = 4.5
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)

Query: 78  HFLHWIESLPDRQTPSWLGLPNSAEKVLLTTRGT---DLVAKL 117
            FL + ++LP   + SWL L ++ + V+  +R      L+AKL
Sbjct: 52  QFLKFAQALPAHGSASWLNLDDALQAVVGNSRSAFLHQLIAKL 94


>d1yixa1 c.1.9.12 (A:1-265) Putative deoxyribonuclease YcfH
           {Escherichia coli [TaxId: 562]}
          Length = 265

 Score = 26.2 bits (56), Expect = 7.0
 Identities = 10/32 (31%), Positives = 15/32 (46%)

Query: 282 PVWLGGLFNPEAYITATRQCIAEANGWSLEEL 313
           PV   G  N  A +    + +A   G ++EEL
Sbjct: 211 PVPHRGKENQPAMVRDVAEYMAVLKGVAVEEL 242


>d1k6ka_ a.174.1.1 (A:) N-terminal, ClpS-binding domain of ClpA, an
           Hsp100 chaperone {Escherichia coli [TaxId: 562]}
          Length = 142

 Score = 25.6 bits (55), Expect = 7.7
 Identities = 22/116 (18%), Positives = 35/116 (30%), Gaps = 1/116 (0%)

Query: 100 SAEKVLLTTRGTDLVAKLLKMQQLEDEDEFAYTEANENKTEERNVDGRPAWMRTLHNSAS 159
           + E +LL         + L+   ++        EA   +T                 S  
Sbjct: 26  TVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQ 85

Query: 160 TWLELLPKALQTLRRTVENIKDPLYRYFEREVSSGAALLRDVISDLEDVI-LICSG 214
             L+     +Q+  R      + L   F  + S  A LLR       DV+  I  G
Sbjct: 86  RVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHG 141


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.135    0.407 

Gapped
Lambda     K      H
   0.267   0.0478    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,568,330
Number of extensions: 71595
Number of successful extensions: 160
Number of sequences better than 10.0: 1
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 6
Length of query: 425
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 337
Effective length of database: 1,199,356
Effective search space: 404182972
Effective search space used: 404182972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.2 bits)