BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16637
(264 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
pdb|3VKG|B Chain B, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
Length = 3245
Score = 320 bits (819), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 147/244 (60%), Positives = 189/244 (77%), Gaps = 2/244 (0%)
Query: 3 QLLFIQALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVPAVLCSVPG 62
++L ++A SDRV +H FV +VFGE F+ + +ELD+ +IVE E++ + P +LCSVPG
Sbjct: 2597 KILLMKAFHSDRVLQYSHSFVCSVFGEDFLNT--QELDMANIVEKEVKSSSPLLLCSVPG 2654
Query: 63 YDASGRVDDLAAELGKQIASIAIGSAEGFNQADNVINVAVRSGKWVLLKNVHLAPQWLVQ 122
YDAS +VDDLA +L KQ S AIGS EGF A+ I A +SG WVLLKN+HLAPQWLVQ
Sbjct: 2655 YDASSKVDDLALQLHKQYKSFAIGSPEGFELAEKSIYAAAKSGTWVLLKNIHLAPQWLVQ 2714
Query: 123 LEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPPGIKANLLRTFSTVPATR 182
LEKKLHSL PH +FRLF+T EI+P +P NLLR +F +E PPG+KANLL TF +PATR
Sbjct: 2715 LEKKLHSLSPHPSFRLFMTSEIHPALPANLLRMSNVFSYENPPGVKANLLHTFIGIPATR 2774
Query: 183 MMKAPNERARLYFLLAWFHAIVQERLRYVPLGWSKFYEFNESDLRVACDTLDTWIDSTAM 242
M K P ER+R+YFLLAWFHAI+QERLRY+PLGW+KF+EFN++DLR A D++D W+D +
Sbjct: 2775 MDKQPAERSRIYFLLAWFHAIIQERLRYIPLGWTKFFEFNDADLRGALDSIDYWVDLYSK 2834
Query: 243 GKRD 246
G+ +
Sbjct: 2835 GRSN 2838
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
pdb|3VKH|B Chain B, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
Length = 3367
Score = 319 bits (818), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 147/244 (60%), Positives = 189/244 (77%), Gaps = 2/244 (0%)
Query: 3 QLLFIQALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVPAVLCSVPG 62
++L ++A SDRV +H FV +VFGE F+ + +ELD+ +IVE E++ + P +LCSVPG
Sbjct: 2719 KILLMKAFHSDRVLQYSHSFVCSVFGEDFLNT--QELDMANIVEKEVKSSSPLLLCSVPG 2776
Query: 63 YDASGRVDDLAAELGKQIASIAIGSAEGFNQADNVINVAVRSGKWVLLKNVHLAPQWLVQ 122
YDAS +VDDLA +L KQ S AIGS EGF A+ I A +SG WVLLKN+HLAPQWLVQ
Sbjct: 2777 YDASSKVDDLALQLHKQYKSFAIGSPEGFELAEKSIYAAAKSGTWVLLKNIHLAPQWLVQ 2836
Query: 123 LEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPPGIKANLLRTFSTVPATR 182
LEKKLHSL PH +FRLF+T EI+P +P NLLR +F +E PPG+KANLL TF +PATR
Sbjct: 2837 LEKKLHSLSPHPSFRLFMTSEIHPALPANLLRMSNVFSYENPPGVKANLLHTFIGIPATR 2896
Query: 183 MMKAPNERARLYFLLAWFHAIVQERLRYVPLGWSKFYEFNESDLRVACDTLDTWIDSTAM 242
M K P ER+R+YFLLAWFHAI+QERLRY+PLGW+KF+EFN++DLR A D++D W+D +
Sbjct: 2897 MDKQPAERSRIYFLLAWFHAIIQERLRYIPLGWTKFFEFNDADLRGALDSIDYWVDLYSK 2956
Query: 243 GKRD 246
G+ +
Sbjct: 2957 GRSN 2960
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 86/174 (49%), Gaps = 12/174 (6%)
Query: 64 DASGRVDDLAAELGKQIASIAIGSAEGFNQADNVINVAVRSGKWVLLKNVHLAPQWL-VQ 122
D + ++ +LA + + I +GS E N A I+ + G W+LL+N+ ++ W+
Sbjct: 2398 DGTFKLIELAKASKESLKIIPLGSIENLNYAQEEISKSKIEGGWILLQNIQMSLSWVKTY 2457
Query: 123 LEKKLHSL---QPHANFRLFLTMEIN-PKVPVNLLRAGRIFVFEPPPGIKANLLRTFSTV 178
L K + + H F++F+T + K+P LL+ FV+E PGI L T +
Sbjct: 2458 LHKHVEETKAAEEHEKFKMFMTCHLTGDKLPAPLLQRTDRFVYEDIPGI----LDTVKDL 2513
Query: 179 PATRMMKAPNE---RARLYFLLAWFHAIVQERLRYVPLGWSKFYEFNESDLRVA 229
++ FLL+WFHA++ R R VP G+SK Y FN+ D + A
Sbjct: 2514 WGSQFFTGKISGVWSVYCTFLLSWFHALITARTRLVPHGFSKKYYFNDCDFQFA 2567
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 85/174 (48%), Gaps = 12/174 (6%)
Query: 64 DASGRVDDLAAELGKQIASIAIGSAEGFNQADNVINVAVRSGKWVLLKNVHLAPQWL-VQ 122
D + ++ +LA + + I +GS E N A I+ + G W+LL+N+ ++ W+
Sbjct: 2189 DGTFKLIELAKASKESLKIIPLGSIENLNYAQEEISKSKIEGGWILLQNIQMSLSWVKTY 2248
Query: 123 LEKKLHSL---QPHANFRLFLTMEIN-PKVPVNLLRAGRIFVFEPPPGIKANLLRTFSTV 178
L K + + H F++F+T + K+P LL+ V+E PGI L T +
Sbjct: 2249 LHKHVEETKAAEEHEKFKMFMTCHLTGDKLPAPLLQRTDRVVYEDIPGI----LDTVKDL 2304
Query: 179 PATRMMKAPNE---RARLYFLLAWFHAIVQERLRYVPLGWSKFYEFNESDLRVA 229
++ FLL+WFHA++ R R VP G+SK Y FN+ D + A
Sbjct: 2305 WGSQFFTGKISGVWSVYCTFLLSWFHALITARTRLVPHGFSKKYYFNDCDFQFA 2358
>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2
Length = 537
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 77/182 (42%), Gaps = 48/182 (26%)
Query: 41 LPHIVEHELRGNVPAVLCSVPGYDASGRVD-DLA-------AELGKQIASIAIGSAEGFN 92
LP IV+ ++ G+V A+L + YDAS + DL +E +A G GFN
Sbjct: 340 LPVIVKGDVDGSVEAILNVMDTYDASHECELDLVHFGVGDISENDVNLAETFHGVIYGFN 399
Query: 93 -QADNVINVAVRSGKWVLLKNVHLAPQWLVQLEKKLHSLQPHANFRLF--LTMEINPKVP 149
A NVI LA + V++ KLH + +RL L E++ ++P
Sbjct: 400 VNAGNVIQ--------------QLAAKKGVKI--KLHKI----IYRLIEDLQEELSSRLP 439
Query: 150 VNLLRAGRIFVFEPPPGIKANLLRTFST--------VPATRMMKAPNERARLYFLLAWFH 201
V E P G +A++L TFS V R+ K E+ + + L+ H
Sbjct: 440 C--------IVEEHPIG-EASILATFSITEGKKKVPVAGCRVQKGQIEKQKKFKLIRNGH 490
Query: 202 AI 203
I
Sbjct: 491 VI 492
>pdb|3ZYQ|A Chain A, Crystal Structure Of The Tandem Vhs And Fyve Domains Of
Hepatocyte Growth Factor-Regulated Tyrosine Kinase
Substrate (Hgs-Hrs) At 1.48 A Resolution
pdb|4AVX|A Chain A, Hepatocyte Growth Factor-Regulated Tyrosine Kinase
Substrate (Hgs-Hrs) Bound To An Ip2 Compound At 1.68 A
Resolution
Length = 226
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
Query: 193 LYFLLAWFHA--------IVQERLRYVPLGWSKFYEFNESDLRVACDTLDTWIDS 239
LY + AW HA +VQ+ + + + F EF ESD A + W+D+
Sbjct: 110 LYLIQAWAHAFRNEPKYKVVQDTYQIMKVEGHVFPEFKESDAMFAAERAPDWVDA 164
>pdb|3JYH|A Chain A, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|B Chain B, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|C Chain C, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|D Chain D, Human Dipeptidyl Peptidase Dpp7
pdb|3N0T|A Chain A, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|B Chain B, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|C Chain C, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|D Chain D, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
Length = 469
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 4/105 (3%)
Query: 6 FIQALRSDRVPAAAHIFVSAVFGEAF--MLSAERELDLPHIVEHELRGNVPAVLCSVPGY 63
F + LR+ R A + FG ++ MLSA + PH+V L + P + + G
Sbjct: 115 FAELLRALRRDLGAQDAPAIAFGGSYGGMLSAYLRMKYPHLVAGALAASAPVLAVAGLG- 173
Query: 64 DASGRVDDLAAELGKQIASIAIGSAEGFNQ-ADNVINVAVRSGKW 107
D++ D+ A+ Q G E F Q D + A + +W
Sbjct: 174 DSNQFFRDVTADFEGQSPKCTQGVREAFRQIKDLFLQGAYDTVRW 218
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 58 CSVPGYDASGRVDDLAAELGKQIASIAIGSAEGFNQADNV 97
C V G DAS +DD + ++ A + SA GFN DN+
Sbjct: 45 CFVNGCDASILLDDTGSIQSEKNAGPNVNSARGFNVVDNI 84
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,673,155
Number of Sequences: 62578
Number of extensions: 311248
Number of successful extensions: 581
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 569
Number of HSP's gapped (non-prelim): 14
length of query: 264
length of database: 14,973,337
effective HSP length: 97
effective length of query: 167
effective length of database: 8,903,271
effective search space: 1486846257
effective search space used: 1486846257
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)