Query psy16637
Match_columns 264
No_of_seqs 124 out of 1120
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 18:08:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16637.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16637hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03028 Dynein_heavy: Dynein 100.0 6.5E-64 1.4E-68 499.6 21.6 253 1-257 68-334 (707)
2 COG5245 DYN1 Dynein, heavy cha 99.7 1.9E-16 4E-21 161.3 7.9 187 70-257 2881-3080(3164)
3 COG5271 MDN1 AAA ATPase contai 99.4 3.4E-12 7.4E-17 131.7 14.7 186 39-234 1531-1753(4600)
4 TIGR02640 gas_vesic_GvpN gas v 98.3 9E-06 2E-10 72.4 12.1 116 50-165 19-186 (262)
5 PHA02244 ATPase-like protein 98.2 7.3E-05 1.6E-09 69.5 16.4 160 49-232 116-306 (383)
6 COG5271 MDN1 AAA ATPase contai 98.2 9.1E-06 2E-10 85.9 10.5 105 41-146 877-1010(4600)
7 PF12781 AAA_9: ATP-binding dy 97.9 3.3E-05 7.2E-10 67.5 6.5 126 39-174 21-162 (228)
8 TIGR01650 PD_CobS cobaltochela 97.8 9.1E-05 2E-09 67.9 8.9 125 49-173 61-231 (327)
9 PF12774 AAA_6: Hydrolytic ATP 97.8 0.0012 2.7E-08 57.7 14.8 169 52-233 32-223 (231)
10 PF07728 AAA_5: AAA domain (dy 97.8 1.7E-05 3.8E-10 63.2 2.8 102 54-155 1-138 (139)
11 KOG1808|consensus 97.3 0.00088 1.9E-08 72.7 8.6 98 48-145 436-561 (1856)
12 PRK07003 DNA polymerase III su 96.4 0.066 1.4E-06 54.4 13.6 156 4-175 4-191 (830)
13 PF00004 AAA: ATPase family as 95.4 0.19 4.2E-06 38.6 9.4 104 55-158 1-126 (132)
14 PRK14958 DNA polymerase III su 95.2 0.2 4.4E-06 48.9 10.8 155 5-175 5-191 (509)
15 PHA02544 44 clamp loader, smal 95.0 0.52 1.1E-05 42.6 12.4 109 54-165 45-161 (316)
16 PRK14960 DNA polymerase III su 95.0 0.35 7.5E-06 48.6 11.9 154 6-175 5-190 (702)
17 PRK12323 DNA polymerase III su 95.0 0.34 7.4E-06 48.6 11.8 155 5-175 5-196 (700)
18 PRK05563 DNA polymerase III su 94.5 0.42 9.1E-06 47.3 11.2 144 6-165 6-179 (559)
19 PRK14951 DNA polymerase III su 94.3 0.59 1.3E-05 46.7 11.9 156 4-175 4-196 (618)
20 cd00009 AAA The AAA+ (ATPases 93.9 1.6 3.4E-05 33.3 11.5 106 51-156 18-143 (151)
21 PRK07764 DNA polymerase III su 93.8 1.5 3.3E-05 45.3 14.0 155 5-175 4-192 (824)
22 PRK14949 DNA polymerase III su 93.6 1.3 2.9E-05 46.0 12.9 153 5-175 5-191 (944)
23 PLN03025 replication factor C 93.6 1.3 2.7E-05 40.5 11.8 119 55-175 37-171 (319)
24 PRK08691 DNA polymerase III su 93.4 0.97 2.1E-05 45.7 11.4 157 4-176 4-192 (709)
25 PRK14952 DNA polymerase III su 92.9 2.3 4.9E-05 42.4 13.1 151 6-174 3-189 (584)
26 PF14532 Sigma54_activ_2: Sigm 92.8 0.42 9.1E-06 37.9 6.6 89 49-145 18-110 (138)
27 PRK07994 DNA polymerase III su 92.6 1.8 3.9E-05 43.6 12.0 155 5-175 5-191 (647)
28 PF13173 AAA_14: AAA domain 92.5 0.92 2E-05 35.4 8.2 90 54-146 4-100 (128)
29 PRK14964 DNA polymerase III su 92.5 1.9 4.2E-05 41.9 11.8 154 6-175 3-188 (491)
30 PRK13342 recombination factor 92.0 3 6.5E-05 39.5 12.4 127 41-174 27-163 (413)
31 PF13177 DNA_pol3_delta2: DNA 91.9 3.4 7.4E-05 33.8 11.2 108 55-164 22-161 (162)
32 PRK14956 DNA polymerase III su 91.7 2.5 5.5E-05 41.0 11.5 152 6-175 8-193 (484)
33 PRK04195 replication factor C 91.5 2.6 5.7E-05 40.7 11.6 120 52-175 39-173 (482)
34 TIGR00635 ruvB Holliday juncti 91.3 3.1 6.6E-05 37.3 11.2 122 53-175 31-172 (305)
35 PRK14961 DNA polymerase III su 91.3 3.9 8.4E-05 38.0 12.1 154 4-173 4-189 (363)
36 PRK14969 DNA polymerase III su 90.9 3.1 6.8E-05 40.8 11.6 155 5-175 5-191 (527)
37 PRK14962 DNA polymerase III su 90.9 6 0.00013 38.4 13.3 152 6-175 4-189 (472)
38 PRK06645 DNA polymerase III su 90.5 5.2 0.00011 39.2 12.6 154 6-175 11-200 (507)
39 PRK14963 DNA polymerase III su 90.4 5.7 0.00012 38.9 12.8 152 6-175 4-188 (504)
40 PRK07133 DNA polymerase III su 90.1 4.9 0.00011 41.0 12.3 155 4-174 6-189 (725)
41 PRK14965 DNA polymerase III su 90.0 4.4 9.6E-05 40.2 11.8 142 5-164 5-178 (576)
42 PRK05707 DNA polymerase III su 89.7 7.3 0.00016 35.9 12.3 110 54-165 24-166 (328)
43 PRK04132 replication factor C 89.6 4.7 0.0001 41.9 11.9 109 65-175 579-702 (846)
44 PRK00080 ruvB Holliday junctio 89.5 5.1 0.00011 36.6 11.1 123 52-175 51-193 (328)
45 PRK08058 DNA polymerase III su 89.2 7.9 0.00017 35.5 12.2 110 55-166 31-171 (329)
46 PRK14957 DNA polymerase III su 89.1 7 0.00015 38.6 12.3 155 5-175 5-191 (546)
47 TIGR02397 dnaX_nterm DNA polym 88.7 7 0.00015 35.6 11.6 118 54-173 38-187 (355)
48 COG0714 MoxR-like ATPases [Gen 88.5 7.9 0.00017 35.4 11.6 119 49-167 40-192 (329)
49 TIGR00678 holB DNA polymerase 88.3 13 0.00028 30.8 11.9 109 55-165 17-156 (188)
50 PRK14971 DNA polymerase III su 88.3 9.2 0.0002 38.4 12.7 117 55-173 42-191 (614)
51 PRK09111 DNA polymerase III su 88.1 8.3 0.00018 38.6 12.2 153 6-174 14-203 (598)
52 PRK08451 DNA polymerase III su 87.9 8 0.00017 38.2 11.8 152 6-175 4-189 (535)
53 PRK05564 DNA polymerase III su 87.8 20 0.00043 32.4 13.8 123 54-178 28-168 (313)
54 PRK00440 rfc replication facto 87.6 15 0.00033 32.7 12.8 119 54-174 40-173 (319)
55 PRK14948 DNA polymerase III su 87.2 12 0.00026 37.6 12.8 108 55-164 41-180 (620)
56 PRK05896 DNA polymerase III su 87.0 7.3 0.00016 39.0 11.0 156 4-175 4-191 (605)
57 PRK03992 proteasome-activating 86.9 8.9 0.00019 36.1 11.2 114 52-165 165-303 (389)
58 PRK07940 DNA polymerase III su 86.5 9.2 0.0002 36.2 11.1 109 55-165 39-177 (394)
59 COG0470 HolB ATPase involved i 86.4 11 0.00023 33.7 11.1 117 54-172 26-176 (325)
60 PRK06647 DNA polymerase III su 85.4 17 0.00036 36.2 12.6 153 5-175 5-191 (563)
61 TIGR00763 lon ATP-dependent pr 84.4 6.8 0.00015 40.4 9.7 112 54-165 349-493 (775)
62 PRK14959 DNA polymerase III su 84.1 9.4 0.0002 38.3 10.2 152 5-173 5-189 (624)
63 CHL00176 ftsH cell division pr 83.9 9.9 0.00022 38.3 10.4 113 53-165 217-354 (638)
64 PRK12402 replication factor C 81.7 24 0.00052 31.8 11.4 119 54-174 38-196 (337)
65 PRK08485 DNA polymerase III su 81.5 20 0.00043 30.9 9.9 93 64-160 12-109 (206)
66 PRK14970 DNA polymerase III su 80.9 46 0.001 30.7 13.7 118 54-173 41-178 (367)
67 cd04196 GT_2_like_d Subfamily 79.5 23 0.00049 29.0 9.7 74 53-127 28-104 (214)
68 PRK08084 DNA replication initi 79.2 22 0.00048 30.8 9.9 119 52-173 45-178 (235)
69 cd06435 CESA_NdvC_like NdvC_li 79.0 21 0.00045 30.1 9.5 76 53-128 29-110 (236)
70 PRK14953 DNA polymerase III su 78.8 40 0.00088 32.8 12.4 154 6-175 6-191 (486)
71 PRK14955 DNA polymerase III su 78.7 19 0.00042 33.8 10.0 153 5-175 5-199 (397)
72 KOG3079|consensus 77.8 17 0.00037 30.9 8.2 54 52-107 7-67 (195)
73 PRK06305 DNA polymerase III su 77.5 44 0.00096 32.2 12.2 151 6-174 7-192 (451)
74 cd04192 GT_2_like_e Subfamily 76.5 27 0.00059 28.9 9.4 73 55-128 31-108 (229)
75 TIGR01241 FtsH_fam ATP-depende 75.4 33 0.00071 33.3 10.8 112 54-165 90-226 (495)
76 TIGR01242 26Sp45 26S proteasom 75.0 30 0.00064 32.0 10.0 112 54-165 158-294 (364)
77 PRK06090 DNA polymerase III su 74.9 15 0.00034 33.7 7.9 73 91-165 90-168 (319)
78 PRK14954 DNA polymerase III su 74.8 53 0.0012 33.1 12.2 144 4-165 4-187 (620)
79 KOG0991|consensus 74.6 49 0.0011 29.6 10.4 180 39-251 36-234 (333)
80 PRK06871 DNA polymerase III su 74.1 16 0.00036 33.6 7.9 74 90-165 88-167 (325)
81 PRK08769 DNA polymerase III su 73.5 15 0.00031 33.8 7.4 74 91-166 95-174 (319)
82 PRK10787 DNA-binding ATP-depen 73.2 25 0.00054 36.4 9.7 111 54-165 351-494 (784)
83 TIGR02881 spore_V_K stage V sp 72.5 66 0.0014 28.1 11.5 120 52-175 42-191 (261)
84 PRK14950 DNA polymerase III su 72.4 65 0.0014 32.1 12.2 150 6-173 6-190 (585)
85 PRK05022 anaerobic nitric oxid 71.0 56 0.0012 31.9 11.2 97 48-145 206-332 (509)
86 KOG1808|consensus 69.7 2.3 5E-05 47.3 1.4 70 92-161 1461-1550(1856)
87 cd02510 pp-GalNAc-T pp-GalNAc- 69.3 41 0.00088 29.8 9.3 73 54-128 32-109 (299)
88 PRK05917 DNA polymerase III su 69.2 88 0.0019 28.4 11.3 73 90-164 76-154 (290)
89 KOG2028|consensus 68.6 30 0.00064 32.9 8.1 125 41-178 153-297 (554)
90 PRK08727 hypothetical protein; 66.9 78 0.0017 27.3 10.3 119 51-173 40-173 (233)
91 PRK13341 recombination factor 66.8 65 0.0014 33.1 11.0 129 41-176 43-182 (725)
92 CHL00195 ycf46 Ycf46; Provisio 66.1 87 0.0019 30.6 11.3 123 52-174 259-403 (489)
93 PRK11608 pspF phage shock prot 64.3 55 0.0012 29.9 9.2 107 49-156 26-169 (326)
94 cd02520 Glucosylceramide_synth 64.3 74 0.0016 26.0 9.3 77 51-127 29-111 (196)
95 COG2256 MGS1 ATPase related to 64.2 1.4E+02 0.003 28.6 12.5 146 7-175 15-176 (436)
96 TIGR01556 rhamnosyltran L-rham 63.8 60 0.0013 28.3 9.2 73 55-128 23-99 (281)
97 PRK08699 DNA polymerase III su 63.0 1E+02 0.0022 28.4 10.6 108 55-164 24-172 (325)
98 TIGR01243 CDC48 AAA family ATP 63.0 99 0.0021 31.6 11.6 114 54-167 489-624 (733)
99 cd04187 DPM1_like_bac Bacteria 62.6 78 0.0017 25.3 9.6 73 53-127 30-105 (181)
100 TIGR01243 CDC48 AAA family ATP 62.5 85 0.0018 32.1 11.1 114 51-164 211-346 (733)
101 cd06439 CESA_like_1 CESA_like_ 62.1 88 0.0019 26.4 9.7 69 55-128 63-135 (251)
102 KOG0989|consensus 61.8 36 0.00078 31.4 7.2 111 51-163 55-187 (346)
103 TIGR02974 phageshock_pspF psp 61.7 76 0.0016 29.1 9.6 112 49-161 19-167 (329)
104 PTZ00454 26S protease regulato 61.6 1.1E+02 0.0024 29.0 10.9 114 51-164 178-316 (398)
105 cd02525 Succinoglycan_BP_ExoA 61.0 97 0.0021 25.8 10.1 72 54-128 33-107 (249)
106 cd01452 VWA_26S_proteasome_sub 60.9 30 0.00065 29.3 6.3 35 55-89 111-148 (187)
107 PF00308 Bac_DnaA: Bacterial d 59.3 1.1E+02 0.0025 26.1 12.2 112 52-165 34-167 (219)
108 PRK10733 hflB ATP-dependent me 59.1 1.7E+02 0.0037 29.5 12.4 123 54-176 187-336 (644)
109 PRK04220 2-phosphoglycerate ki 58.3 56 0.0012 29.8 7.9 30 94-123 179-208 (301)
110 PRK06581 DNA polymerase III su 57.9 55 0.0012 29.2 7.6 74 91-166 71-150 (263)
111 PF00158 Sigma54_activat: Sigm 57.7 71 0.0015 26.2 7.9 94 50-144 20-143 (168)
112 cd06421 CESA_CelA_like CESA_Ce 57.5 65 0.0014 26.7 8.0 25 104-128 84-110 (234)
113 PRK07276 DNA polymerase III su 57.0 54 0.0012 29.7 7.6 71 91-163 86-162 (290)
114 TIGR03420 DnaA_homol_Hda DnaA 56.7 52 0.0011 27.7 7.2 92 50-145 36-133 (226)
115 cd04185 GT_2_like_b Subfamily 56.6 1.1E+02 0.0023 24.9 9.7 72 54-128 28-105 (202)
116 PRK07993 DNA polymerase III su 56.3 42 0.00091 30.9 7.0 73 91-165 90-168 (334)
117 cd04184 GT2_RfbC_Mx_like Myxoc 56.3 1.1E+02 0.0023 24.8 10.3 71 54-127 33-108 (202)
118 PRK06964 DNA polymerase III su 56.1 50 0.0011 30.6 7.4 73 92-166 115-193 (342)
119 PF00733 Asn_synthase: Asparag 56.0 20 0.00044 30.5 4.6 48 42-90 7-55 (255)
120 PF00535 Glycos_transf_2: Glyc 55.1 79 0.0017 24.0 7.6 73 54-129 29-105 (169)
121 TIGR01817 nifA Nif-specific re 55.1 1.1E+02 0.0023 30.0 10.0 96 49-145 216-341 (534)
122 cd04195 GT2_AmsE_like GT2_AmsE 54.6 1.1E+02 0.0025 24.6 9.5 71 54-128 31-106 (201)
123 PRK06893 DNA replication initi 54.0 75 0.0016 27.3 7.9 91 52-145 38-135 (229)
124 PRK05642 DNA replication initi 53.8 69 0.0015 27.7 7.6 90 53-146 46-141 (234)
125 PRK05818 DNA polymerase III su 53.2 1.7E+02 0.0037 26.2 10.3 73 90-164 68-147 (261)
126 PRK11034 clpA ATP-dependent Cl 52.6 70 0.0015 33.1 8.4 92 54-145 490-608 (758)
127 PRK10714 undecaprenyl phosphat 52.6 1.6E+02 0.0035 26.8 10.2 72 54-127 40-115 (325)
128 TIGR03472 HpnI hopanoid biosyn 50.9 1.5E+02 0.0033 27.3 9.9 78 51-128 69-152 (373)
129 TIGR02902 spore_lonB ATP-depen 50.9 52 0.0011 32.4 7.0 62 103-164 174-263 (531)
130 smart00382 AAA ATPases associa 50.8 96 0.0021 22.6 8.5 91 54-144 4-125 (148)
131 KOG2792|consensus 50.7 34 0.00075 30.6 5.1 46 103-148 137-190 (280)
132 COG0464 SpoVK ATPases of the A 50.5 2E+02 0.0043 27.7 10.9 120 53-172 277-417 (494)
133 PRK07399 DNA polymerase III su 49.8 61 0.0013 29.6 6.9 80 92-174 107-194 (314)
134 PF06068 TIP49: TIP49 C-termin 49.0 1E+02 0.0023 29.2 8.2 77 93-172 261-358 (398)
135 PF05496 RuvB_N: Holliday junc 48.9 52 0.0011 28.9 5.9 122 55-177 53-194 (233)
136 cd06437 CESA_CaSu_A2 Cellulose 48.9 1.6E+02 0.0034 24.6 9.4 70 56-127 35-112 (232)
137 cd06438 EpsO_like EpsO protein 46.0 1.6E+02 0.0034 23.7 9.9 72 54-128 30-107 (183)
138 PRK08118 topology modulation p 45.9 78 0.0017 25.8 6.4 58 55-112 4-67 (167)
139 PRK11204 N-glycosyltransferase 45.6 2.5E+02 0.0054 26.1 10.6 71 55-128 86-160 (420)
140 PTZ00361 26 proteosome regulat 45.5 1.6E+02 0.0036 28.3 9.3 112 54-165 219-355 (438)
141 PF13641 Glyco_tranf_2_3: Glyc 45.4 65 0.0014 26.7 6.1 76 52-127 30-111 (228)
142 COG0466 Lon ATP-dependent Lon 45.3 34 0.00074 35.0 4.7 110 53-163 350-494 (782)
143 PRK07132 DNA polymerase III su 45.2 2.4E+02 0.0052 25.6 10.9 116 56-173 22-160 (299)
144 PF12775 AAA_7: P-loop contain 44.3 1.6E+02 0.0034 26.3 8.5 181 50-234 31-252 (272)
145 TIGR02915 PEP_resp_reg putativ 44.1 1.4E+02 0.003 28.2 8.6 96 49-145 159-284 (445)
146 TIGR03689 pup_AAA proteasome A 43.2 2.8E+02 0.0061 27.3 10.7 125 51-175 215-378 (512)
147 TIGR01663 PNK-3'Pase polynucle 43.2 1.4E+02 0.003 29.5 8.5 83 55-141 372-454 (526)
148 cd06442 DPM1_like DPM1_like re 43.2 1.8E+02 0.004 23.7 10.2 73 52-127 27-103 (224)
149 TIGR02880 cbbX_cfxQ probable R 43.2 2.4E+02 0.0052 25.2 9.6 91 51-145 57-170 (284)
150 PRK10629 EnvZ/OmpR regulon mod 41.2 1.5E+02 0.0032 23.4 7.0 57 67-123 53-119 (127)
151 PF01261 AP_endonuc_2: Xylose 41.0 1E+02 0.0022 25.1 6.5 74 67-141 74-164 (213)
152 PRK09112 DNA polymerase III su 40.9 88 0.0019 29.1 6.5 69 103-173 138-211 (351)
153 TIGR03346 chaperone_ClpB ATP-d 40.0 2.7E+02 0.0059 29.2 10.6 93 54-146 597-719 (852)
154 TIGR02639 ClpA ATP-dependent C 39.9 1.5E+02 0.0032 30.4 8.5 95 51-145 480-604 (731)
155 PF09778 Guanylate_cyc_2: Guan 39.8 1.3E+02 0.0029 26.0 7.0 95 4-118 18-114 (212)
156 TIGR02031 BchD-ChlD magnesium 39.7 1.3E+02 0.0027 30.1 7.8 114 54-167 18-163 (589)
157 cd06423 CESA_like CESA_like is 39.5 1.7E+02 0.0036 22.1 8.9 70 52-123 26-99 (180)
158 PRK08903 DnaA regulatory inact 38.7 2.4E+02 0.0052 23.8 8.7 72 51-129 41-116 (227)
159 cd01455 vWA_F11C1-5a_type Von 38.6 80 0.0017 26.8 5.4 57 54-113 113-175 (191)
160 PF02603 Hpr_kinase_N: HPr Ser 35.9 33 0.00071 26.9 2.5 40 41-85 74-113 (127)
161 cd02526 GT2_RfbF_like RfbF is 35.6 1.8E+02 0.004 24.1 7.3 68 55-124 26-97 (237)
162 cd04056 Peptidases_S53 Peptida 35.1 1.1E+02 0.0024 28.4 6.2 72 37-110 76-158 (361)
163 PRK00074 guaA GMP synthase; Re 34.8 2.3E+02 0.0051 27.7 8.7 90 10-105 168-270 (511)
164 PF09370 TIM-br_sig_trns: TIM- 34.4 29 0.00063 31.1 2.1 36 223-258 191-226 (268)
165 TIGR03469 HonB hopene-associat 34.4 3.8E+02 0.0082 24.8 10.4 75 54-128 72-159 (384)
166 PRK11331 5-methylcytosine-spec 33.9 4.5E+02 0.0098 25.5 10.8 114 50-163 192-357 (459)
167 TIGR03345 VI_ClpV1 type VI sec 33.7 1.4E+02 0.0031 31.3 7.4 113 54-166 210-352 (852)
168 cd06434 GT2_HAS Hyaluronan syn 33.6 2.7E+02 0.0059 22.9 8.7 71 54-128 30-103 (235)
169 PRK14583 hmsR N-glycosyltransf 33.3 4.3E+02 0.0092 25.0 10.3 72 52-127 104-180 (444)
170 PRK15424 propionate catabolism 32.8 4.5E+02 0.0098 26.0 10.3 94 49-145 239-373 (538)
171 cd04498 hPOT1_OB2 hPOT1_OB2: A 31.5 24 0.00052 27.8 1.1 20 97-117 73-92 (123)
172 PRK10073 putative glycosyl tra 31.3 4E+02 0.0087 24.1 10.2 72 53-128 36-111 (328)
173 PRK10865 protein disaggregatio 31.3 4.5E+02 0.0097 27.7 10.5 93 53-145 599-721 (857)
174 PRK11388 DNA-binding transcrip 30.8 3.6E+02 0.0077 27.0 9.5 96 49-145 345-467 (638)
175 PF13671 AAA_33: AAA domain; P 30.4 2.4E+02 0.0053 21.4 9.0 72 55-128 2-93 (143)
176 PF13768 VWA_3: von Willebrand 30.2 1.7E+02 0.0036 22.9 5.9 37 52-88 96-136 (155)
177 TIGR02639 ClpA ATP-dependent C 29.9 1.8E+02 0.0039 29.8 7.3 107 55-165 206-346 (731)
178 PF00406 ADK: Adenylate kinase 29.4 82 0.0018 24.8 3.9 50 57-108 1-55 (151)
179 COG5245 DYN1 Dynein, heavy cha 29.4 53 0.0011 37.0 3.3 102 147-254 1628-1735(3164)
180 PRK05342 clpX ATP-dependent pr 29.3 3.4E+02 0.0073 25.9 8.6 93 52-144 108-239 (412)
181 PF12897 Aminotran_MocR: Alani 28.4 50 0.0011 31.4 2.7 102 54-158 125-239 (425)
182 PF12780 AAA_8: P-loop contain 28.4 4.3E+02 0.0092 23.5 13.7 171 54-232 33-263 (268)
183 cd02511 Beta4Glucosyltransfera 27.9 3.6E+02 0.0079 22.6 8.1 67 54-128 28-97 (229)
184 TIGR03574 selen_PSTK L-seryl-t 27.7 2.6E+02 0.0057 24.0 7.1 74 55-128 2-91 (249)
185 PRK10865 protein disaggregatio 27.3 3.1E+02 0.0067 28.8 8.6 110 55-164 202-341 (857)
186 KOG2035|consensus 27.1 2E+02 0.0043 26.4 6.1 43 133-175 155-199 (351)
187 PF13401 AAA_22: AAA domain; P 26.3 2.5E+02 0.0054 20.9 6.1 84 52-144 37-125 (131)
188 cd02514 GT13_GLCNAC-TI GT13_GL 26.1 5.2E+02 0.011 23.9 9.0 44 97-142 88-135 (334)
189 PRK07471 DNA polymerase III su 26.0 2.6E+02 0.0057 26.1 7.1 82 92-175 124-213 (365)
190 KOG3018|consensus 25.9 1.5E+02 0.0033 26.8 5.1 61 2-75 88-149 (362)
191 PRK07261 topology modulation p 25.8 2.8E+02 0.006 22.5 6.6 55 55-109 3-63 (171)
192 PRK00124 hypothetical protein; 25.8 2.5E+02 0.0054 22.9 6.1 38 82-121 47-84 (151)
193 PRK11361 acetoacetate metaboli 25.7 2.8E+02 0.0061 26.1 7.5 97 48-145 162-288 (457)
194 PRK14532 adenylate kinase; Pro 25.4 3.7E+02 0.008 21.8 10.3 32 54-87 2-33 (188)
195 PRK10923 glnG nitrogen regulat 25.2 4.9E+02 0.011 24.6 9.1 115 49-164 158-309 (469)
196 PTZ00088 adenylate kinase 1; P 24.7 1.1E+02 0.0024 26.5 4.2 51 55-107 9-64 (229)
197 cd02522 GT_2_like_a GT_2_like_ 24.5 3.8E+02 0.0083 21.7 7.6 21 104-124 72-94 (221)
198 PLN00020 ribulose bisphosphate 24.4 6.3E+02 0.014 24.2 10.4 112 52-163 146-298 (413)
199 cd02066 GRX_family Glutaredoxi 24.2 2E+02 0.0044 18.4 6.2 36 54-89 1-36 (72)
200 PRK08116 hypothetical protein; 24.2 4.5E+02 0.0098 23.2 8.0 94 52-146 114-222 (268)
201 PRK06620 hypothetical protein; 24.2 4.3E+02 0.0093 22.4 7.6 99 53-165 45-148 (214)
202 PF00763 THF_DHG_CYH: Tetrahyd 24.1 2.2E+02 0.0048 21.8 5.3 54 51-104 27-85 (117)
203 cd01991 Asn_Synthase_B_C The C 24.0 2E+02 0.0042 24.8 5.6 35 42-77 5-39 (269)
204 CHL00095 clpC Clp protease ATP 23.9 4.8E+02 0.01 27.2 9.2 96 50-145 534-662 (821)
205 PF13304 AAA_21: AAA domain; P 23.8 66 0.0014 26.4 2.5 44 100-144 253-298 (303)
206 PLN02726 dolichyl-phosphate be 23.5 4.5E+02 0.0098 22.1 9.3 74 53-128 41-119 (243)
207 cd01453 vWA_transcription_fact 23.5 2.6E+02 0.0056 23.1 6.0 33 55-87 110-146 (183)
208 cd05561 Peptidases_S8_4 Peptid 23.3 1.8E+02 0.0039 25.1 5.2 39 71-110 87-125 (239)
209 PRK14087 dnaA chromosomal repl 23.0 5.6E+02 0.012 24.6 8.9 93 52-146 141-250 (450)
210 smart00350 MCM minichromosome 22.9 2.4E+02 0.0053 27.5 6.5 104 52-156 236-377 (509)
211 PF08571 Yos1: Yos1-like; Int 22.4 45 0.00097 24.3 1.0 20 200-219 14-33 (80)
212 COG3980 spsG Spore coat polysa 22.2 2.7E+02 0.0058 25.5 6.0 25 210-234 265-289 (318)
213 TIGR03111 glyc2_xrt_Gpos1 puta 22.2 6.7E+02 0.015 23.7 10.2 72 55-128 83-157 (439)
214 PF00205 TPP_enzyme_M: Thiamin 22.1 61 0.0013 25.2 1.8 38 50-87 10-49 (137)
215 cd04179 DPM_DPG-synthase_like 22.0 3.9E+02 0.0084 20.9 8.9 69 57-127 32-104 (185)
216 PRK04841 transcriptional regul 22.0 8.8E+02 0.019 24.9 11.7 45 104-150 121-167 (903)
217 COG2255 RuvB Holliday junction 21.9 3.4E+02 0.0075 25.0 6.7 121 54-175 54-194 (332)
218 PLN02459 probable adenylate ki 21.8 2.4E+02 0.0051 25.2 5.7 51 55-107 32-87 (261)
219 TIGR00382 clpX endopeptidase C 21.8 6.1E+02 0.013 24.2 8.8 91 53-144 117-247 (413)
220 cd02071 MM_CoA_mut_B12_BD meth 21.7 3.1E+02 0.0068 20.9 5.8 7 82-88 30-36 (122)
221 CHL00181 cbbX CbbX; Provisiona 21.6 5.8E+02 0.013 22.8 10.7 110 51-164 58-196 (287)
222 PLN02549 asparagine synthase ( 21.6 3E+02 0.0066 27.5 6.9 47 41-88 214-270 (578)
223 PF14085 DUF4265: Domain of un 21.5 3.6E+02 0.0078 20.7 6.0 60 48-107 49-115 (117)
224 PRK09431 asnB asparagine synth 21.2 2.9E+02 0.0062 27.4 6.7 47 41-88 216-276 (554)
225 PRK12422 chromosomal replicati 21.2 7.4E+02 0.016 23.8 9.4 111 52-165 141-272 (445)
226 PF02639 DUF188: Uncharacteriz 21.0 2.4E+02 0.0051 22.4 5.0 60 51-121 9-68 (130)
227 cd04112 Rab26 Rab26 subfamily. 20.9 4.6E+02 0.0099 21.2 7.3 33 67-99 127-159 (191)
228 PRK12337 2-phosphoglycerate ki 20.9 3.7E+02 0.0079 26.3 7.1 28 94-121 348-375 (475)
229 cd01462 VWA_YIEM_type VWA YIEM 20.5 3E+02 0.0065 21.3 5.6 38 53-90 95-137 (152)
230 PLN02187 rooty/superroot1 20.5 3.2E+02 0.007 26.1 6.8 24 92-115 224-247 (462)
231 PF04412 DUF521: Protein of un 20.4 2.2E+02 0.0049 27.1 5.5 64 80-144 265-329 (400)
232 TIGR01536 asn_synth_AEB aspara 20.2 2.5E+02 0.0054 26.9 5.9 39 49-88 250-290 (467)
233 TIGR02764 spore_ybaN_pdaB poly 20.1 4.9E+02 0.011 21.2 7.5 85 51-137 95-183 (191)
234 COG5148 RPN10 26S proteasome r 20.0 3.9E+02 0.0085 22.9 6.2 37 54-90 110-149 (243)
No 1
>PF03028 Dynein_heavy: Dynein heavy chain and region D6 of dynein motor; InterPro: IPR004273 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella. The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits, intermediate size subunits and small subunits (see IPR001372 from INTERPRO). This family represents the C-terminal region of dynein heavy chain. The dynein heavy chain also exhibits ATPase activity and microtubule binding ability and acts as a motor for the movement of organelles and vesicles along microtubules. ; GO: 0003777 microtubule motor activity, 0007018 microtubule-based movement, 0030286 dynein complex; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=100.00 E-value=6.5e-64 Score=499.63 Aligned_cols=253 Identities=48% Similarity=0.814 Sum_probs=209.1
Q ss_pred ChhhhhHHhhcCCcHHHHHHHHHHHHhCcccccccCCCCChhHHhhhhcCCCccEEEEeCCCCCChhHHHHHHHHhc---
Q psy16637 1 MYQLLFIQALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVPAVLCSVPGYDASGRVDDLAAELG--- 77 (264)
Q Consensus 1 fqklll~r~lrpDr~~~a~~~~v~~~lg~~~~~~~~~~~~L~~~~~~~s~~~~Pii~i~s~g~DP~~~i~~lA~~~~--- 77 (264)
|||+||+||+||||+..++++||.++||.+|.+ ++++||++++. ++++++||||++++|+||+..|.++|++++
T Consensus 68 fqklllir~lRpDrl~~~~~~~v~~~lg~~~~~--~~~~~l~~~~~-~s~~~~Pil~~~s~g~Dp~~~i~~lA~~~~~~~ 144 (707)
T PF03028_consen 68 FQKLLLIRALRPDRLIAAMRKFVSSVLGSRFVE--PPPFDLESIYE-ESSPTTPILFILSPGSDPSSEIEQLAKKKGFGN 144 (707)
T ss_dssp HHHHHHHHHH-CCCHHHHHHHHHHHHH-TTTTS-------HHHHHH-CTTTTC-EEEEE-TT--THHHHHHHHHCTT---
T ss_pred HHHHHHHHHhCccHhHHHHHHHHHHHcCchhhc--CCCCCHHHHHH-hcCCCCceEEEeCCCCChHHHHHHHHHHHhhhh
Confidence 799999999999999999999999999999998 78999999996 899999999999999999999999999998
Q ss_pred ccceEEecCCCCCHHHHHHHHHHHHHcCCeEEeccccchhHHHHHHHHHhhccCC--CCCceEEEecCCCCCChHhHhhc
Q psy16637 78 KQIASIAIGSAEGFNQADNVINVAVRSGKWVLLKNVHLAPQWLVQLEKKLHSLQP--HANFRLFLTMEINPKVPVNLLRA 155 (264)
Q Consensus 78 ~~~~~islG~~~~~~~a~~~l~~a~~~G~WllL~N~hL~~~~l~~L~~~l~~~~~--h~~FRL~lt~~~~~~~P~~lL~~ 155 (264)
.++++||||++|+. .|+++|++|+++|+||+||||||+++|++.|++.++.+.. |++||||||+++++.||.++|++
T Consensus 145 ~~~~~islG~~~~~-~a~~~l~~a~~~G~Wv~L~N~HL~~~wl~~Le~~l~~~~~~~h~~FRL~lt~~~~~~~P~~lL~~ 223 (707)
T PF03028_consen 145 KKLQSISLGSGQGP-EAEKALKEAAKEGHWVLLQNCHLAPSWLPQLEKKLESLSPEIHPNFRLFLTSEPSPSFPISLLQS 223 (707)
T ss_dssp --EEEEETTSHHHH-HHHHHHHHHHHHTSEEEEETGGGGCCCHHCHHHHHHC-SSTTSTT-EEEEEEESSTTS-HHHHHC
T ss_pred hheeecCCCCchHH-HHHHHHHHHhcCCeEEEcccchhHHHHHHHHHHHHhccccccccceEEEEEecCcccCCHHHHHc
Confidence 78999999999985 9999999999999999999999999999999999998876 99999999999999999999999
Q ss_pred ceeeeecCCccHHHHHHHHhcCCChhh--hccChhHHHHHHHHHHHHHHHHhhhhhccccCCccccccCHHHHHHHHHHH
Q psy16637 156 GRIFVFEPPPGIKANLLRTFSTVPATR--MMKAPNERARLYFLLAWFHAIVQERLRYVPLGWSKFYEFNESDLRVACDTL 233 (264)
Q Consensus 156 s~kv~~e~p~~lk~~l~~~~~~~~~~~--~~~~~~~~~~l~~~L~~~Hail~eR~~y~p~Gws~~Y~f~~~Dl~~~~~~l 233 (264)
|+||+||+|+|+|++|.++|.++.++. .+.++.++++++|+|||||||++||++|||+|||++|+||++||.+|++++
T Consensus 224 s~kv~~E~p~gik~~l~~~~~~~~~~~~~~~~~~~~~~~l~f~L~~fHavl~eR~~y~p~Gw~~~Y~f~~sDl~~a~~~l 303 (707)
T PF03028_consen 224 SIKVTYEPPPGIKANLLRTYNSISQDFFEMCSKPPEWRRLLFLLAWFHAVLQERRRYGPLGWNKPYEFNDSDLRAALDIL 303 (707)
T ss_dssp SEEEEE---SSHHHHHHHHHCC--SCCHHHTSSSCHHHHHHHHHHHHHHHHHHHHHCTTTTSSS-----HHHHHHHHHHH
T ss_pred ccceeeCChhHHHHHHHHHHHhhhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHhcCCcccceeeeechHHHHHHHHHH
Confidence 999999999999999999999976654 344667899999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCC-------CCCCcccCCCCc
Q psy16637 234 DTWIDSTAMGKR-------DYAMYHSAGPSS 257 (264)
Q Consensus 234 ~~~~~~~~~~~~-------~~~~~~~~~~~~ 257 (264)
+++++..+.... -+-..+|||+-.
T Consensus 304 ~~~~~~~~~~~ipw~~l~~l~~~i~YGGrv~ 334 (707)
T PF03028_consen 304 DNWLDESSPESIPWDALRYLIGEIVYGGRVD 334 (707)
T ss_dssp HHHHHHCSCCCTTHHHHHHHHHHTTTTTT-S
T ss_pred HHHHhhccccCCcHHHHHHHhhhceecCeec
Confidence 999998532211 222468999854
No 2
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=99.65 E-value=1.9e-16 Score=161.27 Aligned_cols=187 Identities=14% Similarity=0.081 Sum_probs=147.9
Q ss_pred HHHHHHhcccceEEe-cCCCCCHHHHHHHHHHHHHcCCeEEeccccchhHHHHHHH-HHhhcc---CC-CCCceEEEecC
Q psy16637 70 DDLAAELGKQIASIA-IGSAEGFNQADNVINVAVRSGKWVLLKNVHLAPQWLVQLE-KKLHSL---QP-HANFRLFLTME 143 (264)
Q Consensus 70 ~~lA~~~~~~~~~is-lG~~~~~~~a~~~l~~a~~~G~WllL~N~hL~~~~l~~L~-~~l~~~---~~-h~~FRL~lt~~ 143 (264)
..++++.......|. +|+.+....|...+..+.++|.|+.++|+||+.+|..++. +.+..+ +. |+.=++|.++.
T Consensus 2881 I~~~k~s~E~~~~v~~lgS~Ene~ya~~~~~~S~~e~~w~~v~nI~lS~~w~k~y~~~~v~~~kaS~~~~k~k~~~t~~~ 2960 (3164)
T COG5245 2881 IYAHKKSLENERNVDRLGSKENEVYAVLNSLFSRKEKSWFEVYNISLSFGWFKRYVEDVVYPIKASRVCGKVKNMWTSMV 2960 (3164)
T ss_pred HHHHHhhhhhhhhhhhhcchhhhHHHHHHHHhhccCCceEEEEeeEeecHHHHhhhHhhcchhHHHHHHhhhhheeeeee
Confidence 334444333344555 8998877788999999999999999999999999998654 444433 23 44445666678
Q ss_pred CCCCChHhHhhcceeeeecCCccHHHHHHHHhcCCChhhhccChhHHHHHHHHHHHHHHHHhhhhhccccCCccccccCH
Q psy16637 144 INPKVPVNLLRAGRIFVFEPPPGIKANLLRTFSTVPATRMMKAPNERARLYFLLAWFHAIVQERLRYVPLGWSKFYEFNE 223 (264)
Q Consensus 144 ~~~~~P~~lL~~s~kv~~e~p~~lk~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~Hail~eR~~y~p~Gws~~Y~f~~ 223 (264)
.++.+|+.+|+.+..++++.-|+++.++.+++... .......+....+..|.|.|+||.+.+|-.++|.||+++|.|++
T Consensus 2961 ~~d~lp~qlL~~~dsfv~~~~p~~~~~~~dL~e~~-~~~~~~t~v~~~~~~f~Lsw~ha~va~v~~~~p~~~~e~~Yf~D 3039 (3164)
T COG5245 2961 DADMLPIQLLIAIDSFVSSTYPETGCGYADLVEID-RYPFDYTLVIACDDAFYLSWEHAAVASVISAGPKENNEEIYFGD 3039 (3164)
T ss_pred ccccccHHHHHHhhhhhhccCCcccccHHHHHhcC-cccccceeeeeehhHHHHHHHHHHHHHHhhcccccCCCceeeCc
Confidence 88899999999999999999999999999988432 21122233344567899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhh-------cCCCCCCCCcccCCCCc
Q psy16637 224 SDLRVACDTLDTWIDST-------AMGKRDYAMYHSAGPSS 257 (264)
Q Consensus 224 ~Dl~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~ 257 (264)
.|+..+-.+|+|.+..+ .+.|..|...+|||--|
T Consensus 3040 ~df~f~T~~L~NIl~~nhln~~~wg~~rDlI~tIvyG~K~s 3080 (3164)
T COG5245 3040 KDFEFKTHLLKNILFLNHLNARKWGNNRDLIFTIVYGKKHS 3080 (3164)
T ss_pred chHHHHHHHHHHHHhccccccccccchhhheeEeeecCccc
Confidence 99999999999887543 67778899999999654
No 3
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.41 E-value=3.4e-12 Score=131.70 Aligned_cols=186 Identities=22% Similarity=0.364 Sum_probs=149.0
Q ss_pred CChhHHhhhhcCCCccEEEEeCCCCCChhHHHHHHHHhcccceEEecCC----------C------CCHHHHHHHHHHHH
Q psy16637 39 LDLPHIVEHELRGNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGS----------A------EGFNQADNVINVAV 102 (264)
Q Consensus 39 ~~L~~~~~~~s~~~~Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~----------~------~~~~~a~~~l~~a~ 102 (264)
.++..++. .-.-..||++--+||+.-|+.|..||++.|+++..|.+.. . -++.|.+..+-.||
T Consensus 1531 ~Nl~rVlR-Amqv~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~am 1609 (4600)
T COG5271 1531 VNLRRVLR-AMQVGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAM 1609 (4600)
T ss_pred HhHHHHHH-HHhcCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHh
Confidence 45666664 4556779999999999999999999999999999888732 1 12346677889999
Q ss_pred HcCCeEEeccccch-hHHHHHHHHHhh------------ccCCCCCceEEEecCCCC------CChHhHhhcceeeeecC
Q psy16637 103 RSGKWVLLKNVHLA-PQWLVQLEKKLH------------SLQPHANFRLFLTMEINP------KVPVNLLRAGRIFVFEP 163 (264)
Q Consensus 103 ~~G~WllL~N~hL~-~~~l~~L~~~l~------------~~~~h~~FRL~lt~~~~~------~~P~~lL~~s~kv~~e~ 163 (264)
++|+||+|+..+|| .+.+..|...|. +...|||||+|-+.+|.. .+|.+++.+-.+|..+.
T Consensus 1610 r~G~WVlLDEiNLaSQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRFsvV~~d~ 1689 (4600)
T COG5271 1610 RDGGWVLLDEINLASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRFSVVKMDG 1689 (4600)
T ss_pred hcCCEEEeehhhhhHHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhhhhheEEecc
Confidence 99999999999999 578899988874 235799999999999885 49999999999999885
Q ss_pred --CccHHHHHHHHhcCCChhhhccChhHHHHHHHHHHHHHHHHhhhhhccccCCccccccCHHHHHHHHHHHH
Q psy16637 164 --PPGIKANLLRTFSTVPATRMMKAPNERARLYFLLAWFHAIVQERLRYVPLGWSKFYEFNESDLRVACDTLD 234 (264)
Q Consensus 164 --p~~lk~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~Hail~eR~~y~p~Gws~~Y~f~~~Dl~~~~~~l~ 234 (264)
..++-.+....|.++.++. ..|++-...-+.-=+..|..||..| .|++||..|-...+..+.
T Consensus 1690 lt~dDi~~Ia~~~yp~v~~d~-------~~kiik~ms~lqd~i~k~~~~g~~g--sPwefnlrdTLRwl~llN 1753 (4600)
T COG5271 1690 LTTDDITHIANKMYPQVNEDW-------RLKIIKFMSRLQDNIEKDISFGSFG--SPWEFNLRDTLRWLILLN 1753 (4600)
T ss_pred cccchHHHHHHhhCCccChHH-------HHHHHHHHHHHHHhhhhhhcccCCC--CCeEEehHHHHHHHHHhh
Confidence 5667777778888876653 3344444566677778899999999 899999988776666654
No 4
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=98.31 E-value=9e-06 Score=72.37 Aligned_cols=116 Identities=18% Similarity=0.189 Sum_probs=88.0
Q ss_pred CCCccEEEEeCCCCCChhHHHHHHHHhcccceEEecCCCCCH--------------------------------HHHHHH
Q psy16637 50 RGNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAEGF--------------------------------NQADNV 97 (264)
Q Consensus 50 ~~~~Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~~~~~--------------------------------~~a~~~ 97 (264)
....|+++.-++|+.-|.....+|+..|..+..+...+.... .+.+..
T Consensus 19 ~~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 98 (262)
T TIGR02640 19 KSGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNR 98 (262)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCch
Confidence 346799999999999999999999988877766644322110 011235
Q ss_pred HHHHHHcCCeEEeccccch-hHHHHHHHHHhhc--------------cCCCCCceEEEecCCCC-----CChHhHhhcce
Q psy16637 98 INVAVRSGKWVLLKNVHLA-PQWLVQLEKKLHS--------------LQPHANFRLFLTMEINP-----KVPVNLLRAGR 157 (264)
Q Consensus 98 l~~a~~~G~WllL~N~hL~-~~~l~~L~~~l~~--------------~~~h~~FRL~lt~~~~~-----~~P~~lL~~s~ 157 (264)
+..|+++|+||+++.++.+ +.....|...+++ +..|++||++.|+++.. .+|..++.++.
T Consensus 99 l~~A~~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~R~~ 178 (262)
T TIGR02640 99 LTLAVREGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLDRLI 178 (262)
T ss_pred HHHHHHcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHHhhcE
Confidence 6778999999999999977 5666677776642 12689999999999863 57999999999
Q ss_pred eeeecCCc
Q psy16637 158 IFVFEPPP 165 (264)
Q Consensus 158 kv~~e~p~ 165 (264)
.+..+.|+
T Consensus 179 ~i~i~~P~ 186 (262)
T TIGR02640 179 TIFMDYPD 186 (262)
T ss_pred EEECCCCC
Confidence 98888775
No 5
>PHA02244 ATPase-like protein
Probab=98.23 E-value=7.3e-05 Score=69.54 Aligned_cols=160 Identities=16% Similarity=0.179 Sum_probs=111.5
Q ss_pred cCCCccEEEEeCCCCCChhHHHHHHHHhcccceEEecC----------CCCCHHHHHHHHHHHHHcCCeEEeccccch-h
Q psy16637 49 LRGNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIG----------SAEGFNQADNVINVAVRSGKWVLLKNVHLA-P 117 (264)
Q Consensus 49 s~~~~Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG----------~~~~~~~a~~~l~~a~~~G~WllL~N~hL~-~ 117 (264)
.....|+++.-++|+.-|..++.+|...+..+..++-- ...+ .+.+..+-.|+++|+|++|+.++.+ +
T Consensus 116 l~~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g-~~~dgpLl~A~~~GgvLiLDEId~a~p 194 (383)
T PHA02244 116 VNANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANG-KFHETPFYEAFKKGGLFFIDEIDASIP 194 (383)
T ss_pred HhcCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccc-cccchHHHHHhhcCCEEEEeCcCcCCH
Confidence 34577999999999999999999999988776655421 1111 2344567888999999999999977 5
Q ss_pred HHHHHHHHHhh---------ccCCCCCceEEEecCCC-----------CCChHhHhhcceeeeecCCccHHHHHHHHhcC
Q psy16637 118 QWLVQLEKKLH---------SLQPHANFRLFLTMEIN-----------PKVPVNLLRAGRIFVFEPPPGIKANLLRTFST 177 (264)
Q Consensus 118 ~~l~~L~~~l~---------~~~~h~~FRL~lt~~~~-----------~~~P~~lL~~s~kv~~e~p~~lk~~l~~~~~~ 177 (264)
+-...|...++ ....|++||+++|+++. ..++.+++.+...|.++.|..+...+..
T Consensus 195 ~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRFv~I~~dyp~~~E~~i~~---- 270 (383)
T PHA02244 195 EALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRFAPIEFDYDEKIEHLISN---- 270 (383)
T ss_pred HHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhcEEeeCCCCcHHHHHHhh----
Confidence 56666666664 23579999999999983 4689999999999999887643332211
Q ss_pred CChhhhccChhHHHHHHHHHHHHHHHHhhhhhccccCCccccccCHHHHHHHHHH
Q psy16637 178 VPATRMMKAPNERARLYFLLAWFHAIVQERLRYVPLGWSKFYEFNESDLRVACDT 232 (264)
Q Consensus 178 ~~~~~~~~~~~~~~~l~~~L~~~Hail~eR~~y~p~Gws~~Y~f~~~Dl~~~~~~ 232 (264)
. ..+++ -|-+. -|+.++-.| .++.||..++..+.+.
T Consensus 271 --------~---~~~lv----~~a~~--lR~~~~~~~--l~~~~StR~li~~a~~ 306 (383)
T PHA02244 271 --------G---DEDLV----NFVAL--LRHEMAEKG--LDHVFSMRAIIHGKKF 306 (383)
T ss_pred --------h---HHHHH----HHHHH--HHHHHhcCC--CCccccHHHHHHHHHh
Confidence 0 01111 11222 234455555 5778898888887776
No 6
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.19 E-value=9.1e-06 Score=85.91 Aligned_cols=105 Identities=26% Similarity=0.409 Sum_probs=81.5
Q ss_pred hhHHhhhhcCCCccEEEEeCCCCCChhHHHHHHHHhcccceEEec----------------CCCCCHHHHHHHHHHHHHc
Q psy16637 41 LPHIVEHELRGNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAI----------------GSAEGFNQADNVINVAVRS 104 (264)
Q Consensus 41 L~~~~~~~s~~~~Pii~i~s~g~DP~~~i~~lA~~~~~~~~~isl----------------G~~~~~~~a~~~l~~a~~~ 104 (264)
+-.++...+..+-|+++--+..+.-|+.|.-+|++.|.++..|.= ..|. .+.-+.++..|+++
T Consensus 877 ~ln~~Ra~s~~~fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~-lsFkEGvLVeAlR~ 955 (4600)
T COG5271 877 YLNTMRAASLSNFPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGS-LSFKEGVLVEALRR 955 (4600)
T ss_pred HHHHHHHHhhcCCcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCc-eeeehhHHHHHHhc
Confidence 334555567788899998777788899999999999877655432 1121 23456789999999
Q ss_pred CCeEEeccccchh-HHHHHHHHHhhc------------cCCCCCceEEEecCCCC
Q psy16637 105 GKWVLLKNVHLAP-QWLVQLEKKLHS------------LQPHANFRLFLTMEINP 146 (264)
Q Consensus 105 G~WllL~N~hL~~-~~l~~L~~~l~~------------~~~h~~FRL~lt~~~~~ 146 (264)
|.||+|+..+||+ ..|..|.++|.- ..|||+||||-|.+|..
T Consensus 956 GyWIVLDELNLApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg 1010 (4600)
T COG5271 956 GYWIVLDELNLAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPG 1010 (4600)
T ss_pred CcEEEeeccccCcHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCc
Confidence 9999999999995 689999988852 25899999999999873
No 7
>PF12781 AAA_9: ATP-binding dynein motor region D5; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.86 E-value=3.3e-05 Score=67.52 Aligned_cols=126 Identities=21% Similarity=0.373 Sum_probs=78.3
Q ss_pred CChhHHhhhhcCCCccEEEEeCCCCCChhHHHHHHHHh-cccceEEecCCCCCHHHHHHHHHHHHHcCCeEEecccc--c
Q psy16637 39 LDLPHIVEHELRGNVPAVLCSVPGYDASGRVDDLAAEL-GKQIASIAIGSAEGFNQADNVINVAVRSGKWVLLKNVH--L 115 (264)
Q Consensus 39 ~~L~~~~~~~s~~~~Pii~i~s~g~DP~~~i~~lA~~~-~~~~~~islG~~~~~~~a~~~l~~a~~~G~WllL~N~h--L 115 (264)
+++++++--..+.+.|+++ ||.....++.++. +.++.++++++.. -.+.|+.|++-|.-|+++|+- +
T Consensus 21 ~siENa~i~~~~~r~PLiI------DPq~qa~~wi~~~~~~~l~v~~~~~~~----~~~~le~air~G~~llIe~v~e~~ 90 (228)
T PF12781_consen 21 LSIENAIILKNSRRWPLII------DPQGQANKWIKNMYKNDLEVTSFSDSN----FLKQLENAIRFGKPLLIENVGESL 90 (228)
T ss_dssp HHHHHHHHCCC-SSEEEEE------STTTCHHHHHHHHCCCCEEEEETTSTC----HHHHHHHHHHCT-EEEEC-GCSCH
T ss_pred hHHhhHHHHhhcCCCceEE------CCchHHHHHHHHhhhhcccccccchHh----HHHHHHHHHHcCCeeeeccccccc
Confidence 4455543223456789876 8888888888766 4568888987642 246899999999999999983 3
Q ss_pred hhHHHHHHHHHhh-----------ccCCCCCceEEEecCCC-CCChHhHhhcceeeeec-CCccHHHHHHHH
Q psy16637 116 APQWLVQLEKKLH-----------SLQPHANFRLFLTMEIN-PKVPVNLLRAGRIFVFE-PPPGIKANLLRT 174 (264)
Q Consensus 116 ~~~~l~~L~~~l~-----------~~~~h~~FRL~lt~~~~-~~~P~~lL~~s~kv~~e-~p~~lk~~l~~~ 174 (264)
.+...+-|.+.+. .+..|++|||||++... +.+|..+..+...|.|. .+.|+...+...
T Consensus 91 dp~l~plL~k~~~~~g~~i~igd~~v~~~~~FrL~L~T~~~~p~~~pe~~s~vtviNFtvt~~gLe~qll~~ 162 (228)
T PF12781_consen 91 DPILDPLLRKNIIKSGKFIKIGDKEVDYNPNFRLYLTTKLPNPHYPPEVSSKVTVINFTVTQEGLEDQLLSI 162 (228)
T ss_dssp HCTCHHHHTTT-EE-SSEEESSSSEEE--SS-EEEEEESSTTSHHHHHHHHCSEEEE----CHHHHHHHHHH
T ss_pred ChhhhhhhcchhccCCceEEecCeEEEeeccceEEEeecCCCCCCChhhhceeeEEEEEecHHHHHHHHHHH
Confidence 3333333332221 12368999999987544 56888888777777765 377887777643
No 8
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.82 E-value=9.1e-05 Score=67.88 Aligned_cols=125 Identities=15% Similarity=0.231 Sum_probs=90.9
Q ss_pred cCCCccEEEEeCCCCCChhHHHHHHHHhcccceEEec----------CC-------CCC-HHHHHHHHHHHHHcCCeEEe
Q psy16637 49 LRGNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAI----------GS-------AEG-FNQADNVINVAVRSGKWVLL 110 (264)
Q Consensus 49 s~~~~Pii~i~s~g~DP~~~i~~lA~~~~~~~~~isl----------G~-------~~~-~~~a~~~l~~a~~~G~WllL 110 (264)
-....|+++.-+||..-|..++.+|++.+..+..|.+ |. +.. ..+.+..+..|+++|.|+++
T Consensus 61 l~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g~illl 140 (327)
T TIGR01650 61 FAYDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQHNVALCF 140 (327)
T ss_pred HhcCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhCCeEEEe
Confidence 3456799999999999999999999999876655543 22 111 12345678899999999999
Q ss_pred ccccch-hHHHHHHHHHhhc------------cCCCCCceEEEecCCCC------------CChHhHhhccee-eeec--
Q psy16637 111 KNVHLA-PQWLVQLEKKLHS------------LQPHANFRLFLTMEINP------------KVPVNLLRAGRI-FVFE-- 162 (264)
Q Consensus 111 ~N~hL~-~~~l~~L~~~l~~------------~~~h~~FRL~lt~~~~~------------~~P~~lL~~s~k-v~~e-- 162 (264)
+.+..+ +..+..|..+|+. +.+|++||++.|++|.. .+|...+.+... +..+
T Consensus 141 DEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp 220 (327)
T TIGR01650 141 DEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTLNYL 220 (327)
T ss_pred chhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheeeEeeCCCC
Confidence 999998 5677777777652 24899999999999853 379999999854 3344
Q ss_pred CCccHHHHHHH
Q psy16637 163 PPPGIKANLLR 173 (264)
Q Consensus 163 ~p~~lk~~l~~ 173 (264)
++..-...+.+
T Consensus 221 ~~e~E~~Il~~ 231 (327)
T TIGR01650 221 EHDNEAAIVLA 231 (327)
T ss_pred CHHHHHHHHHh
Confidence 33333444443
No 9
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.76 E-value=0.0012 Score=57.73 Aligned_cols=169 Identities=16% Similarity=0.268 Sum_probs=101.5
Q ss_pred CccEEEEeCCCCCChhHHHHHHHHhcccceEEecCCCCCHHHHHHHHHHHHHcCCeEEeccccch-hHHHHHHHHHhhc-
Q psy16637 52 NVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAEGFNQADNVINVAVRSGKWVLLKNVHLA-PQWLVQLEKKLHS- 129 (264)
Q Consensus 52 ~~Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~~~~~~~a~~~l~~a~~~G~WllL~N~hL~-~~~l~~L~~~l~~- 129 (264)
...-.+.-+.|...+..+.+||+..|..+..+.-.+.-+.....+++.=+++.|-|++++|.+.- .+.|+.+.+.+.+
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G~~~~GaW~cfdefnrl~~~vLS~i~~~i~~i 111 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKGLAQSGAWLCFDEFNRLSEEVLSVISQQIQSI 111 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHHHHHHT-EEEEETCCCSSHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHHHHHHHhhcCchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 34445678889999999999999999988888877776666777888899999999999999755 5677665554421
Q ss_pred -----------------cCCCCCceEEEecCCC----CCChHhHhhcceeeeecCCccHHHHHHHHhcCCChhhhccChh
Q psy16637 130 -----------------LQPHANFRLFLTMEIN----PKVPVNLLRAGRIFVFEPPPGIKANLLRTFSTVPATRMMKAPN 188 (264)
Q Consensus 130 -----------------~~~h~~FRL~lt~~~~----~~~P~~lL~~s~kv~~e~p~~lk~~l~~~~~~~~~~~~~~~~~ 188 (264)
+..++++++|+|.+|. ..+|..+....+.|+...| +++..+.-.+.+.. +.....
T Consensus 112 ~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lFRpvam~~P-D~~~I~ei~L~s~G---F~~a~~ 187 (231)
T PF12774_consen 112 QDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALFRPVAMMVP-DLSLIAEILLLSQG---FKDAKS 187 (231)
T ss_dssp HHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTEEEEE--S---HHHHHHHHHHCCC---TSSHHH
T ss_pred HHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHhheeEEeCC-CHHHHHHHHHHHcC---chhHHH
Confidence 2467899999999865 3799999999888888854 66666655443321 111111
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccccCCccccccCHHHHHHHHHHH
Q psy16637 189 ERARLYFLLAWFHAIVQERLRYVPLGWSKFYEFNESDLRVACDTL 233 (264)
Q Consensus 189 ~~~~l~~~L~~~Hail~eR~~y~p~Gws~~Y~f~~~Dl~~~~~~l 233 (264)
--+|+ .-|.-+. +..+..+ ..|||+-.-++..+..-
T Consensus 188 La~kl----~~l~~l~--~~~lS~q---~hydfgLRalk~vl~~a 223 (231)
T PF12774_consen 188 LAKKL----VSLFQLC--KEQLSKQ---DHYDFGLRALKSVLRMA 223 (231)
T ss_dssp HHHHH----HHHHHHH--HHCS-SS---TT---SHHHHHHHHHHH
T ss_pred HHHHH----HHHHHHH--HHhhccC---ccccccHHHHHHHHHHH
Confidence 12232 2222222 3444444 68999988877766554
No 10
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.76 E-value=1.7e-05 Score=63.16 Aligned_cols=102 Identities=27% Similarity=0.373 Sum_probs=74.5
Q ss_pred cEEEEeCCCCCChhHHHHHHHHhcccceEEecCCCCCH--------------HHHHHHHHHHHHcCCeEEeccccch-hH
Q psy16637 54 PAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAEGF--------------NQADNVINVAVRSGKWVLLKNVHLA-PQ 118 (264)
Q Consensus 54 Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~~~~~--------------~~a~~~l~~a~~~G~WllL~N~hL~-~~ 118 (264)
|++++-++|+--|..++.+|+..+.++..+++.++... .+.+..+.+|+++|.|++|++++.+ +.
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin~a~~~ 80 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEINRAPPE 80 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCGG--HH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCcccCCHH
Confidence 78999999999999999999999888888888764321 1222334568889999999999998 56
Q ss_pred HHHHHHHHhhcc-----------CCC------CCceEEEecCCCC----CChHhHhhc
Q psy16637 119 WLVQLEKKLHSL-----------QPH------ANFRLFLTMEINP----KVPVNLLRA 155 (264)
Q Consensus 119 ~l~~L~~~l~~~-----------~~h------~~FRL~lt~~~~~----~~P~~lL~~ 155 (264)
++..|...++.- ..+ ++||++.|+++.. .++..++.+
T Consensus 81 v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~R 138 (139)
T PF07728_consen 81 VLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDR 138 (139)
T ss_dssp HHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT
T ss_pred HHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhh
Confidence 777888777531 122 2599999999887 677777654
No 11
>KOG1808|consensus
Probab=97.28 E-value=0.00088 Score=72.67 Aligned_cols=98 Identities=26% Similarity=0.411 Sum_probs=76.8
Q ss_pred hcCCCccEEEEeCCCCCChhHHHHHHHHhcccceEEecCCCCC---------------HHHHHHHHHHHHHcCCeEEecc
Q psy16637 48 ELRGNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAEG---------------FNQADNVINVAVRSGKWVLLKN 112 (264)
Q Consensus 48 ~s~~~~Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~~~~---------------~~~a~~~l~~a~~~G~WllL~N 112 (264)
.+...-|+++....++.-|+.+..+|+++|.++..|..-+.-. ..+=+..+..|+.+|.|++|+-
T Consensus 436 ~~~~~~pillqG~tssGKtsii~~la~~~g~~~vrinnhehtd~qeyig~y~~~~~g~l~freg~LV~Alr~G~~~vlD~ 515 (1856)
T KOG1808|consen 436 ISSGKFPILLQGPTSSGKTSIIKELARATGKNIVRINNHEHTDLQEYIGTYVADDNGDLVFREGVLVQALRNGDWIVLDE 515 (1856)
T ss_pred HhcCCCCeEEecCcCcCchhHHHHHHHHhccCceehhccccchHHHHHHhhhcCCCCCeeeehhHHHHHHHhCCEEEecc
Confidence 4566679999999999999999999999998776655433211 1233456778999999999999
Q ss_pred ccch-hHHHHHHHHHhhc------------cCCCCCceEEEecCCC
Q psy16637 113 VHLA-PQWLVQLEKKLHS------------LQPHANFRLFLTMEIN 145 (264)
Q Consensus 113 ~hL~-~~~l~~L~~~l~~------------~~~h~~FRL~lt~~~~ 145 (264)
+||+ .+.+..|.+.+.- +.+|++|+||.|-++.
T Consensus 516 lnla~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~ 561 (1856)
T KOG1808|consen 516 LNLAPHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPP 561 (1856)
T ss_pred ccccchHHHHHHHhhhhhhccccccccceeeccCcchhhhhhccCc
Confidence 9999 4688888777642 3689999999998776
No 12
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.45 E-value=0.066 Score=54.41 Aligned_cols=156 Identities=17% Similarity=0.268 Sum_probs=100.0
Q ss_pred hhhHHhhcCCcHHHHHHHHHHHHhCcccccccCCCCChhHHhhhhcCCCccEEEEeCCCCCChhHHHHHHHHhccc----
Q psy16637 4 LLFIQALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVPAVLCSVPGYDASGRVDDLAAELGKQ---- 79 (264)
Q Consensus 4 lll~r~lrpDr~~~a~~~~v~~~lg~~~~~~~~~~~~L~~~~~~~s~~~~Pii~i~s~g~DP~~~i~~lA~~~~~~---- 79 (264)
..|.+-+||..|. ++.|-+.+. -.|.+.+. ...-...+||.-++|+.-|.....||+..+..
T Consensus 4 ~vLarKYRPqtFd--------EVIGQe~Vv-----~~L~~aL~-~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~ 69 (830)
T PRK07003 4 QVLARKWRPKDFA--------SLVGQEHVV-----RALTHALD-GGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVT 69 (830)
T ss_pred HhHHHHhCCCcHH--------HHcCcHHHH-----HHHHHHHh-cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCC
Confidence 3466778998764 444544332 13444453 12222346788888999999999999876421
Q ss_pred ------------------ceEEecC--CCCCHHHHHHHHHHHHH-----cCCeEEeccccchhH-HHHHHHHHhhccCCC
Q psy16637 80 ------------------IASIAIG--SAEGFNQADNVINVAVR-----SGKWVLLKNVHLAPQ-WLVQLEKKLHSLQPH 133 (264)
Q Consensus 80 ------------------~~~islG--~~~~~~~a~~~l~~a~~-----~G~WllL~N~hL~~~-~l~~L~~~l~~~~~h 133 (264)
...+-+. +..+.+.++.+++.+.. +...++|+++|.... -.+.|-+.|+ ++.
T Consensus 70 ~~PCG~C~sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLE--EPP 147 (830)
T PRK07003 70 SQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLE--EPP 147 (830)
T ss_pred CCCCcccHHHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHH--hcC
Confidence 1223332 22344566777776653 245688999998743 3345555555 356
Q ss_pred CCceEEEecCCCCCChHhHhhcceeeeecC--CccHHHHHHHHh
Q psy16637 134 ANFRLFLTMEINPKVPVNLLRAGRIFVFEP--PPGIKANLLRTF 175 (264)
Q Consensus 134 ~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~--p~~lk~~l~~~~ 175 (264)
++.+++|+++...++|..|+.+|.++.+.. ...+...|.+..
T Consensus 148 ~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il 191 (830)
T PRK07003 148 PHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERIL 191 (830)
T ss_pred CCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHH
Confidence 688999999888899999999999999975 345555565554
No 13
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.37 E-value=0.19 Score=38.60 Aligned_cols=104 Identities=17% Similarity=0.104 Sum_probs=73.3
Q ss_pred EEEEeCCCCCChhHHHHHHHHhcccceEEecCCCC------CHHHHHHHHHHHHHcC--CeEEeccccchhH-H------
Q psy16637 55 AVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAE------GFNQADNVINVAVRSG--KWVLLKNVHLAPQ-W------ 119 (264)
Q Consensus 55 ii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~~~------~~~~a~~~l~~a~~~G--~WllL~N~hL~~~-~------ 119 (264)
+++.-+||..-|..+..+|+..+..+..++.+.-. ......+.+++|.+.+ .-++++|+|.... -
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~ 80 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSS 80 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccccccccc
Confidence 56778899999999999999998777666654432 2245667788887776 7778899987633 2
Q ss_pred -----HHHHHHHhhccCC-CCCceEEEecCCCCCChHhHh-hccee
Q psy16637 120 -----LVQLEKKLHSLQP-HANFRLFLTMEINPKVPVNLL-RAGRI 158 (264)
Q Consensus 120 -----l~~L~~~l~~~~~-h~~FRL~lt~~~~~~~P~~lL-~~s~k 158 (264)
+..|...++.... ..+..+..|++....++..++ .++-+
T Consensus 81 ~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~~rf~~ 126 (132)
T PF00004_consen 81 FEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLRSRFDR 126 (132)
T ss_dssp HHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHSTTSEE
T ss_pred ccccccceeeecccccccccccceeEEeeCChhhCCHhHHhCCCcE
Confidence 4455555554432 356788888888778988888 55443
No 14
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.16 E-value=0.2 Score=48.92 Aligned_cols=155 Identities=17% Similarity=0.195 Sum_probs=97.6
Q ss_pred hhHHhhcCCcHHHHHHHHHHHHhCcccccccCCCCChhHHhhhhcCCCccEEEEeCCCCCChhHHHHHHHHhccc-----
Q psy16637 5 LFIQALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVPAVLCSVPGYDASGRVDDLAAELGKQ----- 79 (264)
Q Consensus 5 ll~r~lrpDr~~~a~~~~v~~~lg~~~~~~~~~~~~L~~~~~~~s~~~~Pii~i~s~g~DP~~~i~~lA~~~~~~----- 79 (264)
-+.+-+||..+. ++.|-+.+. -.|...+. ...-...+||.-++|+.-|.....+|+..+..
T Consensus 5 ~l~~kyRP~~f~--------divGq~~v~-----~~L~~~~~-~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~ 70 (509)
T PRK14958 5 VLARKWRPRCFQ--------EVIGQAPVV-----RALSNALD-QQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSA 70 (509)
T ss_pred hHHHHHCCCCHH--------HhcCCHHHH-----HHHHHHHH-hCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCc
Confidence 467788998764 344544332 13455553 22222346888899999999999999876421
Q ss_pred -------------------ceEEecCCCCCHHHHHHHHHHHHH---cC--CeEEeccccch-hHHHHHHHHHhhccCCCC
Q psy16637 80 -------------------IASIAIGSAEGFNQADNVINVAVR---SG--KWVLLKNVHLA-PQWLVQLEKKLHSLQPHA 134 (264)
Q Consensus 80 -------------------~~~islG~~~~~~~a~~~l~~a~~---~G--~WllL~N~hL~-~~~l~~L~~~l~~~~~h~ 134 (264)
+..+.-.+..+++.++.+++.+.. .| ..++++++|.. .+-.+.|-+.+++. .+
T Consensus 71 ~pCg~C~~C~~i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEep--p~ 148 (509)
T PRK14958 71 NPCNDCENCREIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEP--PS 148 (509)
T ss_pred ccCCCCHHHHHHhcCCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhcc--CC
Confidence 333433334455666666665442 23 58889999986 44556677777643 34
Q ss_pred CceEEEecCCCCCChHhHhhcceeeeecCC--ccHHHHHHHHh
Q psy16637 135 NFRLFLTMEINPKVPVNLLRAGRIFVFEPP--PGIKANLLRTF 175 (264)
Q Consensus 135 ~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p--~~lk~~l~~~~ 175 (264)
+.++++++....++|..++.+|..+.+.+. ..+...+.+..
T Consensus 149 ~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il 191 (509)
T PRK14958 149 HVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLL 191 (509)
T ss_pred CeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHH
Confidence 556666665556788889999999999864 33445444444
No 15
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=94.99 E-value=0.52 Score=42.58 Aligned_cols=109 Identities=14% Similarity=0.177 Sum_probs=75.9
Q ss_pred cEEEEeCCCCCChhHHHHHHHHhcccceEEecCCCCCHHHHHHHHHHHH------HcCCeEEeccccch--hHHHHHHHH
Q psy16637 54 PAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAEGFNQADNVINVAV------RSGKWVLLKNVHLA--PQWLVQLEK 125 (264)
Q Consensus 54 Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~~~~~~~a~~~l~~a~------~~G~WllL~N~hL~--~~~l~~L~~ 125 (264)
++++.-++|..-+..+..+|+..+..+..++...+. ....+..+.... .++.-|+++++|.. ......|..
T Consensus 45 ~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~ 123 (316)
T PHA02544 45 MLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSDCR-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRS 123 (316)
T ss_pred EEEeeCcCCCCHHHHHHHHHHHhCccceEeccCccc-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCHHHHHHHHH
Confidence 455568889999999999999887777777665532 333333333222 24567899999855 234445555
Q ss_pred HhhccCCCCCceEEEecCCCCCChHhHhhcceeeeecCCc
Q psy16637 126 KLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPP 165 (264)
Q Consensus 126 ~l~~~~~h~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p~ 165 (264)
+++. ...+.+++++++..+.++..+..+|..+.+..|+
T Consensus 124 ~le~--~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~ 161 (316)
T PHA02544 124 FMEA--YSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPT 161 (316)
T ss_pred HHHh--cCCCceEEEEcCChhhchHHHHhhceEEEeCCCC
Confidence 5543 3467799999988888999999999999886665
No 16
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.98 E-value=0.35 Score=48.64 Aligned_cols=154 Identities=17% Similarity=0.242 Sum_probs=97.4
Q ss_pred hHHhhcCCcHHHHHHHHHHHHhCcccccccCCCCChhHHhhhhcCCCccEEEEeCCCCCChhHHHHHHHHhcc-------
Q psy16637 6 FIQALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVPAVLCSVPGYDASGRVDDLAAELGK------- 78 (264)
Q Consensus 6 l~r~lrpDr~~~a~~~~v~~~lg~~~~~~~~~~~~L~~~~~~~s~~~~Pii~i~s~g~DP~~~i~~lA~~~~~------- 78 (264)
|.|-+||..+. ++.|-+.+. -.|...+. .......+||.-++|+.-|.....+|+..+.
T Consensus 5 LarKyRPktFd--------dVIGQe~vv-----~~L~~aI~-~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~ 70 (702)
T PRK14960 5 LARKYRPRNFN--------ELVGQNHVS-----RALSSALE-RGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTST 70 (702)
T ss_pred HHHHhCCCCHH--------HhcCcHHHH-----HHHHHHHH-cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCC
Confidence 66778998763 445544332 13445553 2222345788899999999999999988642
Q ss_pred -----------------cceEEecCCCCCHHHHHHHHHHHH---HcC--CeEEeccccch-hHHHHHHHHHhhccCCCCC
Q psy16637 79 -----------------QIASIAIGSAEGFNQADNVINVAV---RSG--KWVLLKNVHLA-PQWLVQLEKKLHSLQPHAN 135 (264)
Q Consensus 79 -----------------~~~~islG~~~~~~~a~~~l~~a~---~~G--~WllL~N~hL~-~~~l~~L~~~l~~~~~h~~ 135 (264)
.+..+.-.+..+.+.++.++..+. ..| .=++++++|.. ..-...|-+.++. +.+.
T Consensus 71 pCg~C~sC~~I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEE--PP~~ 148 (702)
T PRK14960 71 PCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEE--PPEH 148 (702)
T ss_pred CCccCHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhc--CCCC
Confidence 122222222234455666665543 223 45777999977 4555667666664 3455
Q ss_pred ceEEEecCCCCCChHhHhhcceeeeecCC--ccHHHHHHHHh
Q psy16637 136 FRLFLTMEINPKVPVNLLRAGRIFVFEPP--PGIKANLLRTF 175 (264)
Q Consensus 136 FRL~lt~~~~~~~P~~lL~~s~kv~~e~p--~~lk~~l~~~~ 175 (264)
-++++++.....+|..++.+|.++.+.++ ..+...+.+..
T Consensus 149 v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il 190 (702)
T PRK14960 149 VKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAIL 190 (702)
T ss_pred cEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHH
Confidence 67888887667899999999999999764 34555555554
No 17
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.97 E-value=0.34 Score=48.64 Aligned_cols=155 Identities=18% Similarity=0.306 Sum_probs=98.0
Q ss_pred hhHHhhcCCcHHHHHHHHHHHHhCcccccccCCCCChhHHhhhhcCCCccEEEEeCCCCCChhHHHHHHHHhcc------
Q psy16637 5 LFIQALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVPAVLCSVPGYDASGRVDDLAAELGK------ 78 (264)
Q Consensus 5 ll~r~lrpDr~~~a~~~~v~~~lg~~~~~~~~~~~~L~~~~~~~s~~~~Pii~i~s~g~DP~~~i~~lA~~~~~------ 78 (264)
-|.+-+||..+ .++.|-+.+. -.|.+.+. ...-..-+||.-++|+.-|.....+|+..+.
T Consensus 5 vLarKYRPqtF--------ddVIGQe~vv-----~~L~~al~-~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~ 70 (700)
T PRK12323 5 VLARKWRPRDF--------TTLVGQEHVV-----RALTHALE-QQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGE 70 (700)
T ss_pred hHHHHhCCCcH--------HHHcCcHHHH-----HHHHHHHH-hCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcccc
Confidence 46677888876 3455654432 14555554 2222223677788899999999999987642
Q ss_pred -----------------------cceEEecCCCCCHHHHHHHHHHHH---HcCCe--EEeccccchh-HHHHHHHHHhhc
Q psy16637 79 -----------------------QIASIAIGSAEGFNQADNVINVAV---RSGKW--VLLKNVHLAP-QWLVQLEKKLHS 129 (264)
Q Consensus 79 -----------------------~~~~islG~~~~~~~a~~~l~~a~---~~G~W--llL~N~hL~~-~~l~~L~~~l~~ 129 (264)
.+..+.-++..+++.++++++... ..|+| ++|+.+|... .-.+.|-+.|+
T Consensus 71 ~g~~~~PCG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLE- 149 (700)
T PRK12323 71 GGITAQPCGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLE- 149 (700)
T ss_pred ccCCCCCCcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhc-
Confidence 122232222334566777776654 24544 6679999773 44455555555
Q ss_pred cCCCCCceEEEecCCCCCChHhHhhcceeeeecCC--ccHHHHHHHHh
Q psy16637 130 LQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPP--PGIKANLLRTF 175 (264)
Q Consensus 130 ~~~h~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p--~~lk~~l~~~~ 175 (264)
++.++.+++|+++...++|..|+.+|..+.+..+ ..++..+.+..
T Consensus 150 -EPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il 196 (700)
T PRK12323 150 -EPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAIL 196 (700)
T ss_pred -cCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHH
Confidence 3556778888888888999999999999998764 34455554443
No 18
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=94.47 E-value=0.42 Score=47.25 Aligned_cols=144 Identities=16% Similarity=0.239 Sum_probs=90.3
Q ss_pred hHHhhcCCcHHHHHHHHHHHHhCcccccccCCCCChhHHhhhhcCCCccEEEEeCCCCCChhHHHHHHHHhc--------
Q psy16637 6 FIQALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVPAVLCSVPGYDASGRVDDLAAELG-------- 77 (264)
Q Consensus 6 l~r~lrpDr~~~a~~~~v~~~lg~~~~~~~~~~~~L~~~~~~~s~~~~Pii~i~s~g~DP~~~i~~lA~~~~-------- 77 (264)
|.|-+||..+. +..|-+-+. -.|...+. .......+||.-++|..-|.....+|+...
T Consensus 6 l~~k~rP~~f~--------~viGq~~v~-----~~L~~~i~-~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~ 71 (559)
T PRK05563 6 LYRKWRPQTFE--------DVVGQEHIT-----KTLKNAIK-QGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGE 71 (559)
T ss_pred HHHHhCCCcHH--------hccCcHHHH-----HHHHHHHH-cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC
Confidence 56888998764 334543221 13444453 222233467788889998988888888753
Q ss_pred ----------------ccceEEecCCCCCHHHHHHHHHHHHH-----cCCeEEeccccchh-HHHHHHHHHhhccCCCCC
Q psy16637 78 ----------------KQIASIAIGSAEGFNQADNVINVAVR-----SGKWVLLKNVHLAP-QWLVQLEKKLHSLQPHAN 135 (264)
Q Consensus 78 ----------------~~~~~islG~~~~~~~a~~~l~~a~~-----~G~WllL~N~hL~~-~~l~~L~~~l~~~~~h~~ 135 (264)
..+..+.-.+..+++.++.+++.+.. +...++++++|... .-...|.+.++ ++.++
T Consensus 72 pC~~C~~C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLE--epp~~ 149 (559)
T PRK05563 72 PCNECEICKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLE--EPPAH 149 (559)
T ss_pred CCCccHHHHHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhc--CCCCC
Confidence 12233333333445566666666442 35688899999773 44555666665 34556
Q ss_pred ceEEEecCCCCCChHhHhhcceeeeecCCc
Q psy16637 136 FRLFLTMEINPKVPVNLLRAGRIFVFEPPP 165 (264)
Q Consensus 136 FRL~lt~~~~~~~P~~lL~~s~kv~~e~p~ 165 (264)
..++++++....+|..+..+|..+.+.+++
T Consensus 150 ~ifIlatt~~~ki~~tI~SRc~~~~f~~~~ 179 (559)
T PRK05563 150 VIFILATTEPHKIPATILSRCQRFDFKRIS 179 (559)
T ss_pred eEEEEEeCChhhCcHHHHhHheEEecCCCC
Confidence 677776655568999999999999987643
No 19
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.33 E-value=0.59 Score=46.75 Aligned_cols=156 Identities=18% Similarity=0.270 Sum_probs=94.4
Q ss_pred hhhHHhhcCCcHHHHHHHHHHHHhCcccccccCCCCChhHHhhhhcCCCccEEEEeCCCCCChhHHHHHHHHhcc-----
Q psy16637 4 LLFIQALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVPAVLCSVPGYDASGRVDDLAAELGK----- 78 (264)
Q Consensus 4 lll~r~lrpDr~~~a~~~~v~~~lg~~~~~~~~~~~~L~~~~~~~s~~~~Pii~i~s~g~DP~~~i~~lA~~~~~----- 78 (264)
..+.+-+||..+... .|-+.+. -.|.+.+. ...-..-+||.-++|+.-|.....+|+..+.
T Consensus 4 ~vla~KyRP~~f~dv--------iGQe~vv-----~~L~~~l~-~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~ 69 (618)
T PRK14951 4 LVLARKYRPRSFSEM--------VGQEHVV-----QALTNALT-QQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDG 69 (618)
T ss_pred HHHHHHHCCCCHHHh--------cCcHHHH-----HHHHHHHH-cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCccc
Confidence 457788899876433 3433221 13455553 1111223577788899999988888887641
Q ss_pred ------------------------cceEEecCCCCCHHHHHHHHHHHHHc-----CCeEEeccccchh-HHHHHHHHHhh
Q psy16637 79 ------------------------QIASIAIGSAEGFNQADNVINVAVRS-----GKWVLLKNVHLAP-QWLVQLEKKLH 128 (264)
Q Consensus 79 ------------------------~~~~islG~~~~~~~a~~~l~~a~~~-----G~WllL~N~hL~~-~~l~~L~~~l~ 128 (264)
.+..+.-.+..+++.++.+++.+... ...++|+++|... .-.+.|-+.++
T Consensus 70 ~~~~~~~pCg~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLE 149 (618)
T PRK14951 70 QGGITATPCGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLE 149 (618)
T ss_pred ccCCCCCCCCccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcc
Confidence 12223222233455677777765432 3588899999874 44556666665
Q ss_pred ccCCCCCceEEEecCCCCCChHhHhhcceeeeecCC--ccHHHHHHHHh
Q psy16637 129 SLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPP--PGIKANLLRTF 175 (264)
Q Consensus 129 ~~~~h~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p--~~lk~~l~~~~ 175 (264)
+ +.+..++++++....++|..++.+|..+.+.+. ..+...+.+..
T Consensus 150 E--PP~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~ 196 (618)
T PRK14951 150 E--PPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVL 196 (618)
T ss_pred c--CCCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHH
Confidence 4 334445566665555688889999999999764 34455555444
No 20
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=93.94 E-value=1.6 Score=33.30 Aligned_cols=106 Identities=12% Similarity=0.047 Sum_probs=66.6
Q ss_pred CCccEEEEeCCCCCChhHHHHHHHHh---cccceEEecCCCCCHHHHHHH----------HHHHHHcCCeEEeccccchh
Q psy16637 51 GNVPAVLCSVPGYDASGRVDDLAAEL---GKQIASIAIGSAEGFNQADNV----------INVAVRSGKWVLLKNVHLAP 117 (264)
Q Consensus 51 ~~~Pii~i~s~g~DP~~~i~~lA~~~---~~~~~~islG~~~~~~~a~~~----------l~~a~~~G~WllL~N~hL~~ 117 (264)
+..++++.-++|+.-|..+..++... +..+..+...+.......... ......++..+++++++...
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~ 97 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS 97 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh
Confidence 45578888899999999988888876 555666655443221111111 11223457899999998763
Q ss_pred -HHHHHHHHHhhccCC----CCCceEEEecCCCC--CChHhHhhcc
Q psy16637 118 -QWLVQLEKKLHSLQP----HANFRLFLTMEINP--KVPVNLLRAG 156 (264)
Q Consensus 118 -~~l~~L~~~l~~~~~----h~~FRL~lt~~~~~--~~P~~lL~~s 156 (264)
.....+...++.... +.++++++++++.. .++..+..++
T Consensus 98 ~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~r~ 143 (151)
T cd00009 98 RGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYDRL 143 (151)
T ss_pred HHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHhhh
Confidence 333455555554432 57889999988776 5666666665
No 21
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=93.83 E-value=1.5 Score=45.34 Aligned_cols=155 Identities=17% Similarity=0.212 Sum_probs=95.9
Q ss_pred hhHHhhcCCcHHHHHHHHHHHHhCcccccccCCCCChhHHhhhhcCCCccEEEEeCCCCCChhHHHHHHHHhcc------
Q psy16637 5 LFIQALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVPAVLCSVPGYDASGRVDDLAAELGK------ 78 (264)
Q Consensus 5 ll~r~lrpDr~~~a~~~~v~~~lg~~~~~~~~~~~~L~~~~~~~s~~~~Pii~i~s~g~DP~~~i~~lA~~~~~------ 78 (264)
-|.+-.||..|.. ++|-+.+. -.|...+. ...-..-+||.-++|+.-+.....||+....
T Consensus 4 ~l~~KyRP~~f~e--------iiGqe~v~-----~~L~~~i~-~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~ 69 (824)
T PRK07764 4 ALYRRYRPATFAE--------VIGQEHVT-----EPLSTALD-SGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTS 69 (824)
T ss_pred hHHHHhCCCCHHH--------hcCcHHHH-----HHHHHHHH-hCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCC
Confidence 4678889987753 44543322 12444553 2222234678888899999998888887641
Q ss_pred --------------------cceEEecCCCCCHHHHHHHHHHHHH-----cCCeEEeccccch-hHHHHHHHHHhhccCC
Q psy16637 79 --------------------QIASIAIGSAEGFNQADNVINVAVR-----SGKWVLLKNVHLA-PQWLVQLEKKLHSLQP 132 (264)
Q Consensus 79 --------------------~~~~islG~~~~~~~a~~~l~~a~~-----~G~WllL~N~hL~-~~~l~~L~~~l~~~~~ 132 (264)
.+..|.-++.-+++.++.+++.+.. +..-++|+++|.. ..-.+.|-++|++ +
T Consensus 70 ~pCg~C~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEE--p 147 (824)
T PRK07764 70 TPCGECDSCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEE--P 147 (824)
T ss_pred CCCcccHHHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhC--C
Confidence 1222322222345666666555432 2345788999988 4455667777764 4
Q ss_pred CCCceEEEecCCCCCChHhHhhcceeeeecCC--ccHHHHHHHHh
Q psy16637 133 HANFRLFLTMEINPKVPVNLLRAGRIFVFEPP--PGIKANLLRTF 175 (264)
Q Consensus 133 h~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p--~~lk~~l~~~~ 175 (264)
.++..++++++..++++..|..+|..+.+..+ ..+...|.+.+
T Consensus 148 P~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il 192 (824)
T PRK07764 148 PEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERIC 192 (824)
T ss_pred CCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHH
Confidence 45556776666556788889999999999863 45555566554
No 22
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.58 E-value=1.3 Score=46.03 Aligned_cols=153 Identities=16% Similarity=0.250 Sum_probs=96.8
Q ss_pred hhHHhhcCCcHHHHHHHHHHHHhCcccccccCCCCChhHHhhhhcCCCcc--EEEEeCCCCCChhHHHHHHHHhccc-c-
Q psy16637 5 LFIQALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVP--AVLCSVPGYDASGRVDDLAAELGKQ-I- 80 (264)
Q Consensus 5 ll~r~lrpDr~~~a~~~~v~~~lg~~~~~~~~~~~~L~~~~~~~s~~~~P--ii~i~s~g~DP~~~i~~lA~~~~~~-~- 80 (264)
-|.+-+||..|.. ++|-+.+. -.|.+++. ..+.| +||.-++|+.-|.....+|+..+.. .
T Consensus 5 ~LaeKyRP~tFdd--------IIGQe~Iv-----~~LknaI~---~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~ 68 (944)
T PRK14949 5 VLARKWRPATFEQ--------MVGQSHVL-----HALTNALT---QQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGV 68 (944)
T ss_pred hHHHHhCCCCHHH--------hcCcHHHH-----HHHHHHHH---hCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCC
Confidence 4677889987643 44554332 12555554 22344 4788899999999999999887421 0
Q ss_pred --------------------eEEecCC--CCCHHHHHHHHHHHHH---cCC--eEEeccccch-hHHHHHHHHHhhccCC
Q psy16637 81 --------------------ASIAIGS--AEGFNQADNVINVAVR---SGK--WVLLKNVHLA-PQWLVQLEKKLHSLQP 132 (264)
Q Consensus 81 --------------------~~islG~--~~~~~~a~~~l~~a~~---~G~--WllL~N~hL~-~~~l~~L~~~l~~~~~ 132 (264)
..+-+.. ..+++.++.+++.... +|. -++|+++|.. ..-.+.|-+.++ ++
T Consensus 69 ~~~pCg~C~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLE--EP 146 (944)
T PRK14949 69 TATPCGVCSSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLE--EP 146 (944)
T ss_pred CCCCCCCchHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHh--cc
Confidence 0111111 1234455655554432 344 5667999988 445566666665 45
Q ss_pred CCCceEEEecCCCCCChHhHhhcceeeeecCC--ccHHHHHHHHh
Q psy16637 133 HANFRLFLTMEINPKVPVNLLRAGRIFVFEPP--PGIKANLLRTF 175 (264)
Q Consensus 133 h~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p--~~lk~~l~~~~ 175 (264)
..+.|+++++....+++..|+.+|.++.+.+. ..++..+.+..
T Consensus 147 P~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il 191 (944)
T PRK14949 147 PEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHIL 191 (944)
T ss_pred CCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHH
Confidence 67778888887777899999999999998864 44555565544
No 23
>PLN03025 replication factor C subunit; Provisional
Probab=93.58 E-value=1.3 Score=40.46 Aligned_cols=119 Identities=20% Similarity=0.278 Sum_probs=77.9
Q ss_pred EEEEeCCCCCChhHHHHHHHHh-ccc--ceEEecCCC--CCHHHHHHHHHHHHHc------C--CeEEeccccchhH-HH
Q psy16637 55 AVLCSVPGYDASGRVDDLAAEL-GKQ--IASIAIGSA--EGFNQADNVINVAVRS------G--KWVLLKNVHLAPQ-WL 120 (264)
Q Consensus 55 ii~i~s~g~DP~~~i~~lA~~~-~~~--~~~islG~~--~~~~~a~~~l~~a~~~------G--~WllL~N~hL~~~-~l 120 (264)
++|.-+||..-|..+..+|+.. +.. ...+.+... .+.+.++..++...+. | .-++|+++|.... --
T Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq 116 (319)
T PLN03025 37 LILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQ 116 (319)
T ss_pred EEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHHH
Confidence 7778899999999999999886 321 123334332 2334455555443321 3 4678899987743 33
Q ss_pred HHHHHHhhccCCCCCceEEEecCCCCCChHhHhhcceeeeecCC--ccHHHHHHHHh
Q psy16637 121 VQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPP--PGIKANLLRTF 175 (264)
Q Consensus 121 ~~L~~~l~~~~~h~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p--~~lk~~l~~~~ 175 (264)
..|.+.++. +.++-|++++|+..+.+...+..+|..+.+.++ ..++..+.+..
T Consensus 117 ~aL~~~lE~--~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~ 171 (319)
T PLN03025 117 QALRRTMEI--YSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVV 171 (319)
T ss_pred HHHHHHHhc--ccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHH
Confidence 445555543 345568889998888888899999999999876 44455555544
No 24
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=93.36 E-value=0.97 Score=45.74 Aligned_cols=157 Identities=19% Similarity=0.265 Sum_probs=97.3
Q ss_pred hhhHHhhcCCcHHHHHHHHHHHHhCcccccccCCCCChhHHhhhhcCCCccEEEEeCCCCCChhHHHHHHHHhccc----
Q psy16637 4 LLFIQALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVPAVLCSVPGYDASGRVDDLAAELGKQ---- 79 (264)
Q Consensus 4 lll~r~lrpDr~~~a~~~~v~~~lg~~~~~~~~~~~~L~~~~~~~s~~~~Pii~i~s~g~DP~~~i~~lA~~~~~~---- 79 (264)
.-|.+-+||..+. ++.|-+.+. -.|...+. ...-..-+||.-++|+.-|.....+|+..+..
T Consensus 4 ~vLarKYRP~tFd--------dIIGQe~vv-----~~L~~ai~-~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~ 69 (709)
T PRK08691 4 QVLARKWRPKTFA--------DLVGQEHVV-----KALQNALD-EGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQH 69 (709)
T ss_pred hhHHHHhCCCCHH--------HHcCcHHHH-----HHHHHHHH-cCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCC
Confidence 3467788998763 455544322 13445553 11222247888899999999998898875311
Q ss_pred --------------------ceEEecCCCCCHHHHHHHHHHHH-----HcCCeEEeccccchh-HHHHHHHHHhhccCCC
Q psy16637 80 --------------------IASIAIGSAEGFNQADNVINVAV-----RSGKWVLLKNVHLAP-QWLVQLEKKLHSLQPH 133 (264)
Q Consensus 80 --------------------~~~islG~~~~~~~a~~~l~~a~-----~~G~WllL~N~hL~~-~~l~~L~~~l~~~~~h 133 (264)
+..+.-.+..+++.++.+++.+. .+..-++|+++|... .-.+.|-+.++. ++
T Consensus 70 ~~pCg~C~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEE--Pp 147 (709)
T PRK08691 70 GEPCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEE--PP 147 (709)
T ss_pred CCCCcccHHHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHh--CC
Confidence 11222223334556667776542 234688889999763 345556666653 45
Q ss_pred CCceEEEecCCCCCChHhHhhcceeeeecCC--ccHHHHHHHHhc
Q psy16637 134 ANFRLFLTMEINPKVPVNLLRAGRIFVFEPP--PGIKANLLRTFS 176 (264)
Q Consensus 134 ~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p--~~lk~~l~~~~~ 176 (264)
++.++++++....++|..++.+|..+.+.++ ..+...+.+...
T Consensus 148 ~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~ 192 (709)
T PRK08691 148 EHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLD 192 (709)
T ss_pred CCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHH
Confidence 6667888887677899999999998886653 445555555543
No 25
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.85 E-value=2.3 Score=42.37 Aligned_cols=151 Identities=14% Similarity=0.220 Sum_probs=92.5
Q ss_pred hHHhhcCCcHHHHHHHHHHHHhCcccccccCCCCChhHHhhhhcCCCcc--EEEEeCCCCCChhHHHHHHHHhcc-----
Q psy16637 6 FIQALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVP--AVLCSVPGYDASGRVDDLAAELGK----- 78 (264)
Q Consensus 6 l~r~lrpDr~~~a~~~~v~~~lg~~~~~~~~~~~~L~~~~~~~s~~~~P--ii~i~s~g~DP~~~i~~lA~~~~~----- 78 (264)
+.+-+||..+. ++.|-+.+. -.|...+. ..+.| +||.-++|..-+.....+|+..+.
T Consensus 3 l~~kyRP~~f~--------eivGq~~i~-----~~L~~~i~---~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~ 66 (584)
T PRK14952 3 LYRKYRPATFA--------EVVGQEHVT-----EPLSSALD---AGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPT 66 (584)
T ss_pred HHHHhCCCcHH--------HhcCcHHHH-----HHHHHHHH---cCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC
Confidence 45778998764 344544322 12555553 22334 577888899999988888887531
Q ss_pred ---------------------cceEEecCCCCCHHHHHHHHHHHH-----HcCCeEEeccccchh-HHHHHHHHHhhccC
Q psy16637 79 ---------------------QIASIAIGSAEGFNQADNVINVAV-----RSGKWVLLKNVHLAP-QWLVQLEKKLHSLQ 131 (264)
Q Consensus 79 ---------------------~~~~islG~~~~~~~a~~~l~~a~-----~~G~WllL~N~hL~~-~~l~~L~~~l~~~~ 131 (264)
.+..+.-++..+++.++.+++.+. .+..-++++++|... .-.+.|-+.++ +
T Consensus 67 ~~pCg~C~~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LE--E 144 (584)
T PRK14952 67 ATPCGVCESCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVE--E 144 (584)
T ss_pred CCcccccHHHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHh--c
Confidence 112222222234566666655543 234677889999884 44455655555 3
Q ss_pred CCCCceEEEecCCCCCChHhHhhcceeeeecCC--ccHHHHHHHH
Q psy16637 132 PHANFRLFLTMEINPKVPVNLLRAGRIFVFEPP--PGIKANLLRT 174 (264)
Q Consensus 132 ~h~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p--~~lk~~l~~~ 174 (264)
+.++.++++++....+++..|..+|..+.+.++ ..+...+.+.
T Consensus 145 pp~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i 189 (584)
T PRK14952 145 PPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARI 189 (584)
T ss_pred CCCCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHH
Confidence 455667777666557899999999999999764 3344444443
No 26
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=92.78 E-value=0.42 Score=37.88 Aligned_cols=89 Identities=21% Similarity=0.276 Sum_probs=55.5
Q ss_pred cCCCccEEEEeCCCCCChhHHHHHHHHhcc---cceEEecCCCCCHHHHHHHHHHHHHcCCeEEeccccch-hHHHHHHH
Q psy16637 49 LRGNVPAVLCSVPGYDASGRVDDLAAELGK---QIASIAIGSAEGFNQADNVINVAVRSGKWVLLKNVHLA-PQWLVQLE 124 (264)
Q Consensus 49 s~~~~Pii~i~s~g~DP~~~i~~lA~~~~~---~~~~islG~~~~~~~a~~~l~~a~~~G~WllL~N~hL~-~~~l~~L~ 124 (264)
...+.|+++.-.+|+.-......+....+. .+..+...... .+.++++ +|++++|+|++.- ...-..|.
T Consensus 18 a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----~~~l~~a--~~gtL~l~~i~~L~~~~Q~~L~ 90 (138)
T PF14532_consen 18 AKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----AELLEQA--KGGTLYLKNIDRLSPEAQRRLL 90 (138)
T ss_dssp HCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----HHHHHHC--TTSEEEEECGCCS-HHHHHHHH
T ss_pred hCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----HHHHHHc--CCCEEEECChHHCCHHHHHHHH
Confidence 345679999999998876654444443332 22333222211 3355554 8999999999655 55666777
Q ss_pred HHhhccCCCCCceEEEecCCC
Q psy16637 125 KKLHSLQPHANFRLFLTMEIN 145 (264)
Q Consensus 125 ~~l~~~~~h~~FRL~lt~~~~ 145 (264)
..+...+ ..++|+..|+...
T Consensus 91 ~~l~~~~-~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 91 DLLKRQE-RSNVRLIASSSQD 110 (138)
T ss_dssp HHHHHCT-TTTSEEEEEECC-
T ss_pred HHHHhcC-CCCeEEEEEeCCC
Confidence 7776544 6788999998654
No 27
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=92.57 E-value=1.8 Score=43.55 Aligned_cols=155 Identities=18% Similarity=0.272 Sum_probs=94.8
Q ss_pred hhHHhhcCCcHHHHHHHHHHHHhCcccccccCCCCChhHHhhhhcCCCccEEEEeCCCCCChhHHHHHHHHhccc-----
Q psy16637 5 LFIQALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVPAVLCSVPGYDASGRVDDLAAELGKQ----- 79 (264)
Q Consensus 5 ll~r~lrpDr~~~a~~~~v~~~lg~~~~~~~~~~~~L~~~~~~~s~~~~Pii~i~s~g~DP~~~i~~lA~~~~~~----- 79 (264)
-|.+-+||..+.. +.|-+.+. --|...+. ...-..-+||.-++|+.-|.....+|+..+..
T Consensus 5 ~La~KyRP~~f~d--------ivGQe~vv-----~~L~~~l~-~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~ 70 (647)
T PRK07994 5 VLARKWRPQTFAE--------VVGQEHVL-----TALANALD-LGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITA 70 (647)
T ss_pred hHHHHhCCCCHHH--------hcCcHHHH-----HHHHHHHH-cCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCC
Confidence 3667788876643 34544322 13445553 11111236788888999999999998876421
Q ss_pred -------------------ceEEecCCCCCHHHHHHHHHHHH---HcCC--eEEeccccchh-HHHHHHHHHhhccCCCC
Q psy16637 80 -------------------IASIAIGSAEGFNQADNVINVAV---RSGK--WVLLKNVHLAP-QWLVQLEKKLHSLQPHA 134 (264)
Q Consensus 80 -------------------~~~islG~~~~~~~a~~~l~~a~---~~G~--WllL~N~hL~~-~~l~~L~~~l~~~~~h~ 134 (264)
+..+.=.+..+.+.++.+++.+. .+|. -++|+++|... +-.+.|-+.++ ++.+
T Consensus 71 ~pCg~C~~C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLE--EPp~ 148 (647)
T PRK07994 71 TPCGECDNCREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLE--EPPE 148 (647)
T ss_pred CCCCCCHHHHHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHH--cCCC
Confidence 12221111134456666666554 2354 45669999774 45566666665 4556
Q ss_pred CceEEEecCCCCCChHhHhhcceeeeecCC--ccHHHHHHHHh
Q psy16637 135 NFRLFLTMEINPKVPVNLLRAGRIFVFEPP--PGIKANLLRTF 175 (264)
Q Consensus 135 ~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p--~~lk~~l~~~~ 175 (264)
+.++++++....++|..|+.+|..+.+.++ ..+...|.+..
T Consensus 149 ~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il 191 (647)
T PRK07994 149 HVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHIL 191 (647)
T ss_pred CeEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHH
Confidence 678888877777899999999999999865 33444454443
No 28
>PF13173 AAA_14: AAA domain
Probab=92.54 E-value=0.92 Score=35.40 Aligned_cols=90 Identities=17% Similarity=0.278 Sum_probs=63.2
Q ss_pred cEEEEeCCCCCChhHHHHHHHHhc--ccceEEecCCCCCHHHH-----HHHHHHHHHcCCeEEeccccchhHHHHHHHHH
Q psy16637 54 PAVLCSVPGYDASGRVDDLAAELG--KQIASIAIGSAEGFNQA-----DNVINVAVRSGKWVLLKNVHLAPQWLVQLEKK 126 (264)
Q Consensus 54 Pii~i~s~g~DP~~~i~~lA~~~~--~~~~~islG~~~~~~~a-----~~~l~~a~~~G~WllL~N~hL~~~~l~~L~~~ 126 (264)
.+++.-..++.-|..+.++|++.. .++..+++........+ +..++.....+..|+|+++|..+.|...+..+
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iDEiq~~~~~~~~lk~l 83 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPDLLEYFLELIKPGKKYIFIDEIQYLPDWEDALKFL 83 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhhhHHHHHHhhccCCcEEEEehhhhhccHHHHHHHH
Confidence 455566679999999999998876 67778888664321111 11222211356899999999999999998887
Q ss_pred hhccCCCCCceEEEecCCCC
Q psy16637 127 LHSLQPHANFRLFLTMEINP 146 (264)
Q Consensus 127 l~~~~~h~~FRL~lt~~~~~ 146 (264)
.+.. ++.++++|.....
T Consensus 84 ~d~~---~~~~ii~tgS~~~ 100 (128)
T PF13173_consen 84 VDNG---PNIKIILTGSSSS 100 (128)
T ss_pred HHhc---cCceEEEEccchH
Confidence 7632 6789999876543
No 29
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.48 E-value=1.9 Score=41.95 Aligned_cols=154 Identities=14% Similarity=0.190 Sum_probs=97.2
Q ss_pred hHHhhcCCcHHHHHHHHHHHHhCcccccccCCCCChhHHhhhhcCCCccEEEEeCCCCCChhHHHHHHHHhc--------
Q psy16637 6 FIQALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVPAVLCSVPGYDASGRVDDLAAELG-------- 77 (264)
Q Consensus 6 l~r~lrpDr~~~a~~~~v~~~lg~~~~~~~~~~~~L~~~~~~~s~~~~Pii~i~s~g~DP~~~i~~lA~~~~-------- 77 (264)
+.|-+||..+. +..|-+.+. -.|...+. ...-...+||.-++|+.-|....-+|+..+
T Consensus 3 la~KyRP~~f~--------dliGQe~vv-----~~L~~a~~-~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~ 68 (491)
T PRK14964 3 LALKYRPSSFK--------DLVGQDVLV-----RILRNAFT-LNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSD 68 (491)
T ss_pred hhHHhCCCCHH--------HhcCcHHHH-----HHHHHHHH-cCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCC
Confidence 45667887663 334433221 13444553 222222488888999999988888887541
Q ss_pred ----------------ccceEEecCCCCCHHHHHHHHHHHHH-----cCCeEEeccccchh-HHHHHHHHHhhccCCCCC
Q psy16637 78 ----------------KQIASIAIGSAEGFNQADNVINVAVR-----SGKWVLLKNVHLAP-QWLVQLEKKLHSLQPHAN 135 (264)
Q Consensus 78 ----------------~~~~~islG~~~~~~~a~~~l~~a~~-----~G~WllL~N~hL~~-~~l~~L~~~l~~~~~h~~ 135 (264)
..+..+.-.+..+.+.++.+++.+.. +..-++++++|.-. +-.+.|.+.+++ +.+.
T Consensus 69 pCg~C~~C~~i~~~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEe--Pp~~ 146 (491)
T PRK14964 69 PCGTCHNCISIKNSNHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEE--PAPH 146 (491)
T ss_pred CccccHHHHHHhccCCCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhC--CCCC
Confidence 12334433334456677777776642 34688999999774 445667677764 4455
Q ss_pred ceEEEecCCCCCChHhHhhcceeeeecCC--ccHHHHHHHHh
Q psy16637 136 FRLFLTMEINPKVPVNLLRAGRIFVFEPP--PGIKANLLRTF 175 (264)
Q Consensus 136 FRL~lt~~~~~~~P~~lL~~s~kv~~e~p--~~lk~~l~~~~ 175 (264)
-+++++++...++|..+..+|..+.+.++ ..+...+.+..
T Consensus 147 v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia 188 (491)
T PRK14964 147 VKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIA 188 (491)
T ss_pred eEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHH
Confidence 57777776667899999999999999754 34555555544
No 30
>PRK13342 recombination factor protein RarA; Reviewed
Probab=92.02 E-value=3 Score=39.47 Aligned_cols=127 Identities=17% Similarity=0.207 Sum_probs=80.3
Q ss_pred hhHHhhhhcCCCccEEEEeCCCCCChhHHHHHHHHhcccceEEecCCCCCHHHHHHHHHHHH---H--cCCeEEeccccc
Q psy16637 41 LPHIVEHELRGNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAEGFNQADNVINVAV---R--SGKWVLLKNVHL 115 (264)
Q Consensus 41 L~~~~~~~s~~~~Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~~~~~~~a~~~l~~a~---~--~G~WllL~N~hL 115 (264)
|..++. .....+++|.-+||+.-|.....+|+..+..+..++-... +.+..+..++.+. . ++.-|+|+++|.
T Consensus 27 L~~~i~--~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~-~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~ 103 (413)
T PRK13342 27 LRRMIE--AGRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS-GVKDLREVIEEARQRRSAGRRTILFIDEIHR 103 (413)
T ss_pred HHHHHH--cCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc-cHHHHHHHHHHHHHhhhcCCceEEEEechhh
Confidence 566664 2333368888899999999999999988877766654432 3345566666653 2 556888999986
Q ss_pred hh-HHHHHHHHHhhccCCCCCceEEEecC--CCCCChHhHhhcceeeeecCCc--cHHHHHHHH
Q psy16637 116 AP-QWLVQLEKKLHSLQPHANFRLFLTME--INPKVPVNLLRAGRIFVFEPPP--GIKANLLRT 174 (264)
Q Consensus 116 ~~-~~l~~L~~~l~~~~~h~~FRL~lt~~--~~~~~P~~lL~~s~kv~~e~p~--~lk~~l~~~ 174 (264)
.. ...+.|-+.++. ..+.++.++. +...++..++.+|..+.+.+++ .+...+.+.
T Consensus 104 l~~~~q~~LL~~le~----~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~ 163 (413)
T PRK13342 104 FNKAQQDALLPHVED----GTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRA 163 (413)
T ss_pred hCHHHHHHHHHHhhc----CcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHH
Confidence 53 333344444432 3344444432 3336888999999988888644 344444443
No 31
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=91.93 E-value=3.4 Score=33.81 Aligned_cols=108 Identities=16% Similarity=0.134 Sum_probs=71.6
Q ss_pred EEEEeCCCCCChhHHHHHHHHhc-----------------------ccceEEecCCC---CCHHHHHHHHHHHHHc----
Q psy16637 55 AVLCSVPGYDASGRVDDLAAELG-----------------------KQIASIAIGSA---EGFNQADNVINVAVRS---- 104 (264)
Q Consensus 55 ii~i~s~g~DP~~~i~~lA~~~~-----------------------~~~~~islG~~---~~~~~a~~~l~~a~~~---- 104 (264)
+||..++|..-...+..+|+..- ..+..+.-... -..+.++.+++.....
T Consensus 22 ~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i~i~~ir~i~~~~~~~~~~~ 101 (162)
T PF13177_consen 22 LLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKSIKIDQIREIIEFLSLSPSEG 101 (162)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSSBSHHHHHHHHHHCTSS-TTS
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccchhhHHHHHHHHHHHHHHHhcC
Confidence 56667778888888888887641 12344433322 1346677666654433
Q ss_pred -CCeEEeccccch-hHHHHHHHHHhhccCCCCCceEEEecCCCCCChHhHhhcceeeeecCC
Q psy16637 105 -GKWVLLKNVHLA-PQWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPP 164 (264)
Q Consensus 105 -G~WllL~N~hL~-~~~l~~L~~~l~~~~~h~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p 164 (264)
-.-++++++|.. ..--..|-+.+| ++.++-+++|+++....++..+..+|..+.+.+.
T Consensus 102 ~~KviiI~~ad~l~~~a~NaLLK~LE--epp~~~~fiL~t~~~~~il~TI~SRc~~i~~~~l 161 (162)
T PF13177_consen 102 KYKVIIIDEADKLTEEAQNALLKTLE--EPPENTYFILITNNPSKILPTIRSRCQVIRFRPL 161 (162)
T ss_dssp SSEEEEEETGGGS-HHHHHHHHHHHH--STTTTEEEEEEES-GGGS-HHHHTTSEEEEE---
T ss_pred CceEEEeehHhhhhHHHHHHHHHHhc--CCCCCEEEEEEECChHHChHHHHhhceEEecCCC
Confidence 245677999877 455566766666 5667889999999999999999999999998753
No 32
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.65 E-value=2.5 Score=41.01 Aligned_cols=152 Identities=18% Similarity=0.265 Sum_probs=93.2
Q ss_pred hHHhhcCCcHHHHHHHHHHHHhCcccccccCCCCChhHHhhhhcCCCcc--EEEEeCCCCCChhHHHHHHHHhccc----
Q psy16637 6 FIQALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVP--AVLCSVPGYDASGRVDDLAAELGKQ---- 79 (264)
Q Consensus 6 l~r~lrpDr~~~a~~~~v~~~lg~~~~~~~~~~~~L~~~~~~~s~~~~P--ii~i~s~g~DP~~~i~~lA~~~~~~---- 79 (264)
+.+-+||..+.. +.|.+.+- -.|...+. ..+.| +||.-++|+.-|.....+|+..+..
T Consensus 8 L~~KyRP~~f~d--------vVGQe~iv-----~~L~~~i~---~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~ 71 (484)
T PRK14956 8 LSRKYRPQFFRD--------VIHQDLAI-----GALQNALK---SGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIG 71 (484)
T ss_pred hHHHhCCCCHHH--------HhChHHHH-----HHHHHHHH---cCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccC
Confidence 567788887644 33433221 12455553 22334 7889999999999999999876421
Q ss_pred --------------------ceEEecCCCCCHHHHHHHHHHHH---HcCC--eEEeccccchh-HHHHHHHHHhhccCCC
Q psy16637 80 --------------------IASIAIGSAEGFNQADNVINVAV---RSGK--WVLLKNVHLAP-QWLVQLEKKLHSLQPH 133 (264)
Q Consensus 80 --------------------~~~islG~~~~~~~a~~~l~~a~---~~G~--WllL~N~hL~~-~~l~~L~~~l~~~~~h 133 (264)
+..+.-.+..+.+.++.+++.+. ..|. -++++++|... .-.+.|-+.++ ++.
T Consensus 72 ~~pCg~C~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLE--EPp 149 (484)
T PRK14956 72 NEPCNECTSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLE--EPP 149 (484)
T ss_pred ccccCCCcHHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhh--cCC
Confidence 22222222233445555544433 3343 46779999874 44455555554 345
Q ss_pred CCceEEEecCCCCCChHhHhhcceeeeecCCc--cHHHHHHHHh
Q psy16637 134 ANFRLFLTMEINPKVPVNLLRAGRIFVFEPPP--GIKANLLRTF 175 (264)
Q Consensus 134 ~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p~--~lk~~l~~~~ 175 (264)
.+.++++++.....+|..++.+|..+.+.+++ .++..+.+..
T Consensus 150 ~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~ 193 (484)
T PRK14956 150 AHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLC 193 (484)
T ss_pred CceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHH
Confidence 66677777777778999999999999887654 3555555543
No 33
>PRK04195 replication factor C large subunit; Provisional
Probab=91.49 E-value=2.6 Score=40.74 Aligned_cols=120 Identities=18% Similarity=0.169 Sum_probs=80.5
Q ss_pred CccEEEEeCCCCCChhHHHHHHHHhcccceEEecCCCCCHHHHHHHHHHHHH-------cCCeEEeccccchh-----HH
Q psy16637 52 NVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAEGFNQADNVINVAVR-------SGKWVLLKNVHLAP-----QW 119 (264)
Q Consensus 52 ~~Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~~~~~~~a~~~l~~a~~-------~G~WllL~N~hL~~-----~~ 119 (264)
..++++.-+||+.-|..+..+|++.+..+..+.-+...........+..+.. ++.-|+|++++... ..
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~ 118 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNEDRGG 118 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccHHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccchhH
Confidence 4578888999999999999999999877666655543333445555555543 45688999987642 34
Q ss_pred HHHHHHHhhccCCCCCceEEEecCCCCCChH-hHhhcceeeeecCCc--cHHHHHHHHh
Q psy16637 120 LVQLEKKLHSLQPHANFRLFLTMEINPKVPV-NLLRAGRIFVFEPPP--GIKANLLRTF 175 (264)
Q Consensus 120 l~~L~~~l~~~~~h~~FRL~lt~~~~~~~P~-~lL~~s~kv~~e~p~--~lk~~l~~~~ 175 (264)
+..|.+.++ ..+..+.++++....++. .+...|..|.+.+|. .+...+.+..
T Consensus 119 ~~aL~~~l~----~~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~ 173 (482)
T PRK04195 119 ARAILELIK----KAKQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRIC 173 (482)
T ss_pred HHHHHHHHH----cCCCCEEEeccCccccchhhHhccceEEEecCCCHHHHHHHHHHHH
Confidence 555655554 234467888876666665 788889999887653 3444444443
No 34
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=91.31 E-value=3.1 Score=37.31 Aligned_cols=122 Identities=13% Similarity=0.097 Sum_probs=76.8
Q ss_pred ccEEEEeCCCCCChhHHHHHHHHhcccceEEecCCCCCHHHHHHHHHHHHHcCCeEEeccccchhH-HHHHHHHHhhcc-
Q psy16637 53 VPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAEGFNQADNVINVAVRSGKWVLLKNVHLAPQ-WLVQLEKKLHSL- 130 (264)
Q Consensus 53 ~Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~~~~~~~a~~~l~~a~~~G~WllL~N~hL~~~-~l~~L~~~l~~~- 130 (264)
.++++.-++|+.-|.....+|.+.+.++..+..............+ .++..+..++|+++|..+. ....|-..++..
T Consensus 31 ~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~ 109 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLAAIL-TNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFR 109 (305)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCchhHHHHH-HhcccCCEEEEehHhhhCHHHHHHhhHHHhhhh
Confidence 3588889999999999999999988766555432222212222333 3467889999999997643 223333333211
Q ss_pred ---------------CCCCCceEEEecCCCCCChHhHhhcc-eeeeecCC--ccHHHHHHHHh
Q psy16637 131 ---------------QPHANFRLFLTMEINPKVPVNLLRAG-RIFVFEPP--PGIKANLLRTF 175 (264)
Q Consensus 131 ---------------~~h~~FRL~lt~~~~~~~P~~lL~~s-~kv~~e~p--~~lk~~l~~~~ 175 (264)
...+.|.++.+++....++..+..++ ..+.++++ ..++..+.+..
T Consensus 110 ~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~ 172 (305)
T TIGR00635 110 LDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSA 172 (305)
T ss_pred eeeeeccCccccceeecCCCeEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHH
Confidence 12355888887777777888888887 44556643 44555555443
No 35
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.29 E-value=3.9 Score=38.05 Aligned_cols=154 Identities=16% Similarity=0.188 Sum_probs=91.4
Q ss_pred hhhHHhhcCCcHHHHHHHHHHHHhCcccccccCCCCChhHHhhhhcCCCccEEEEeCCCCCChhHHHHHHHHhcc-----
Q psy16637 4 LLFIQALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVPAVLCSVPGYDASGRVDDLAAELGK----- 78 (264)
Q Consensus 4 lll~r~lrpDr~~~a~~~~v~~~lg~~~~~~~~~~~~L~~~~~~~s~~~~Pii~i~s~g~DP~~~i~~lA~~~~~----- 78 (264)
.-+.+-+||..+. ++.|-+.+. -.|...+. ...-..+++|.-++|+.-|.....+|+....
T Consensus 4 ~~l~~kyrP~~~~--------~iiGq~~~~-----~~l~~~~~-~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~ 69 (363)
T PRK14961 4 QILARKWRPQYFR--------DIIGQKHIV-----TAISNGLS-LGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT 69 (363)
T ss_pred HHHHHHhCCCchh--------hccChHHHH-----HHHHHHHH-cCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC
Confidence 3467778887664 344544332 12445553 2222224688889999999999999987641
Q ss_pred -------------------cceEEecCCCCCHHHHHHHHHHHHH---cC--CeEEeccccchhH-HHHHHHHHhhccCCC
Q psy16637 79 -------------------QIASIAIGSAEGFNQADNVINVAVR---SG--KWVLLKNVHLAPQ-WLVQLEKKLHSLQPH 133 (264)
Q Consensus 79 -------------------~~~~islG~~~~~~~a~~~l~~a~~---~G--~WllL~N~hL~~~-~l~~L~~~l~~~~~h 133 (264)
.+..+.-++....+..+.+++.+.. .| .-++++++|.... -.+.|-+.++. +.
T Consensus 70 ~~pc~~c~~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe--~~ 147 (363)
T PRK14961 70 SNPCRKCIICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEE--PP 147 (363)
T ss_pred CCCCCCCHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhc--CC
Confidence 1112221111233445555544322 23 4788899998753 23445455543 34
Q ss_pred CCceEEEecCCCCCChHhHhhcceeeeecCCc--cHHHHHHH
Q psy16637 134 ANFRLFLTMEINPKVPVNLLRAGRIFVFEPPP--GIKANLLR 173 (264)
Q Consensus 134 ~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p~--~lk~~l~~ 173 (264)
++-+++++++....++..+..+|..+.+.+++ .+...+.+
T Consensus 148 ~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~ 189 (363)
T PRK14961 148 QHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKY 189 (363)
T ss_pred CCeEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHH
Confidence 45577777766668999999999999988653 34444444
No 36
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.93 E-value=3.1 Score=40.84 Aligned_cols=155 Identities=17% Similarity=0.274 Sum_probs=94.9
Q ss_pred hhHHhhcCCcHHHHHHHHHHHHhCcccccccCCCCChhHHhhhhcCCCccEEEEeCCCCCChhHHHHHHHHhcc------
Q psy16637 5 LFIQALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVPAVLCSVPGYDASGRVDDLAAELGK------ 78 (264)
Q Consensus 5 ll~r~lrpDr~~~a~~~~v~~~lg~~~~~~~~~~~~L~~~~~~~s~~~~Pii~i~s~g~DP~~~i~~lA~~~~~------ 78 (264)
-|.+-+||..+. +..|-+.+. -.|...+. .......+||.-++|+.-|.....+|+..+.
T Consensus 5 ~l~~k~rP~~f~--------divGq~~v~-----~~L~~~i~-~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~ 70 (527)
T PRK14969 5 VLARKWRPKSFS--------ELVGQEHVV-----RALTNALE-QQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTA 70 (527)
T ss_pred HHHHHhCCCcHH--------HhcCcHHHH-----HHHHHHHH-cCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC
Confidence 466778887664 344544332 12444453 2222234678889999999999999987632
Q ss_pred ------------------cceEEecCCCCCHHHHHHHHHHHHHc---C--CeEEeccccchh-HHHHHHHHHhhccCCCC
Q psy16637 79 ------------------QIASIAIGSAEGFNQADNVINVAVRS---G--KWVLLKNVHLAP-QWLVQLEKKLHSLQPHA 134 (264)
Q Consensus 79 ------------------~~~~islG~~~~~~~a~~~l~~a~~~---G--~WllL~N~hL~~-~~l~~L~~~l~~~~~h~ 134 (264)
.+..+.-++..+.+.++++++.+... | .-++++++|... +-.+.|-+.+++ +.+
T Consensus 71 ~pcg~C~~C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEe--pp~ 148 (527)
T PRK14969 71 TPCGVCSACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEE--PPE 148 (527)
T ss_pred CCCCCCHHHHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhC--CCC
Confidence 11122222223455667777766542 3 346679998774 344555565653 456
Q ss_pred CceEEEecCCCCCChHhHhhcceeeeecCC--ccHHHHHHHHh
Q psy16637 135 NFRLFLTMEINPKVPVNLLRAGRIFVFEPP--PGIKANLLRTF 175 (264)
Q Consensus 135 ~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p--~~lk~~l~~~~ 175 (264)
+.++++++.....+|..++.+|..+.+.++ ..+...+.+.+
T Consensus 149 ~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il 191 (527)
T PRK14969 149 HVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHIL 191 (527)
T ss_pred CEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 678888776666788889999999999875 34455555544
No 37
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.87 E-value=6 Score=38.38 Aligned_cols=152 Identities=15% Similarity=0.217 Sum_probs=91.6
Q ss_pred hHHhhcCCcHHHHHHHHHHHHhCcccccccCCCCChhHHhhhhcCCCcc--EEEEeCCCCCChhHHHHHHHHhcc-----
Q psy16637 6 FIQALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVP--AVLCSVPGYDASGRVDDLAAELGK----- 78 (264)
Q Consensus 6 l~r~lrpDr~~~a~~~~v~~~lg~~~~~~~~~~~~L~~~~~~~s~~~~P--ii~i~s~g~DP~~~i~~lA~~~~~----- 78 (264)
+.+-+||..+.. +.|.+.+. --|...+. ..+.| +||.-+||+.-|.....+|+..+.
T Consensus 4 l~~kyRP~~~~d--------ivGq~~i~-----~~L~~~i~---~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~ 67 (472)
T PRK14962 4 LYRKYRPKTFSE--------VVGQDHVK-----KLIINALK---KNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKG 67 (472)
T ss_pred hHHHHCCCCHHH--------ccCcHHHH-----HHHHHHHH---cCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC
Confidence 446788887643 44433221 12344443 23344 788899999999999999987642
Q ss_pred -------------------cceEEecCCCCCHHHHHHHHHHHHH-----cCCeEEeccccchh-HHHHHHHHHhhccCCC
Q psy16637 79 -------------------QIASIAIGSAEGFNQADNVINVAVR-----SGKWVLLKNVHLAP-QWLVQLEKKLHSLQPH 133 (264)
Q Consensus 79 -------------------~~~~islG~~~~~~~a~~~l~~a~~-----~G~WllL~N~hL~~-~~l~~L~~~l~~~~~h 133 (264)
.+..+.=.+..+.+.++++.+.+.. +..-|+++++|.-. .-...|-+.++ ++.
T Consensus 68 ~~pc~~c~~c~~i~~g~~~dv~el~aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE--~p~ 145 (472)
T PRK14962 68 VEPCNECRACRSIDEGTFMDVIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLE--EPP 145 (472)
T ss_pred CCCCcccHHHHHHhcCCCCccEEEeCcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHH--hCC
Confidence 1223322223344555555544332 23467789998763 33344544444 344
Q ss_pred CCceEEEecCCCCCChHhHhhcceeeeecCC--ccHHHHHHHHh
Q psy16637 134 ANFRLFLTMEINPKVPVNLLRAGRIFVFEPP--PGIKANLLRTF 175 (264)
Q Consensus 134 ~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p--~~lk~~l~~~~ 175 (264)
++..+++++.....++..+..+|..+.+.++ ..++..+.+..
T Consensus 146 ~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~ 189 (472)
T PRK14962 146 SHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVA 189 (472)
T ss_pred CcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHH
Confidence 5667766665445899999999999999875 55666666654
No 38
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=90.49 E-value=5.2 Score=39.16 Aligned_cols=154 Identities=16% Similarity=0.176 Sum_probs=92.4
Q ss_pred hHHhhcCCcHHHHHHHHHHHHhCcccccccCCCCChhHHhhhhcCCCccEEEEeCCCCCChhHHHHHHHHhcc-------
Q psy16637 6 FIQALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVPAVLCSVPGYDASGRVDDLAAELGK------- 78 (264)
Q Consensus 6 l~r~lrpDr~~~a~~~~v~~~lg~~~~~~~~~~~~L~~~~~~~s~~~~Pii~i~s~g~DP~~~i~~lA~~~~~------- 78 (264)
+.+-+||..+... .|-+.+. -.|...+. ...-...+||.-++|+.-|.....+|+..+.
T Consensus 11 la~kyRP~~f~dl--------iGq~~vv-----~~L~~ai~-~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~ 76 (507)
T PRK06645 11 FARKYRPSNFAEL--------QGQEVLV-----KVLSYTIL-NDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITEN 76 (507)
T ss_pred hhhhhCCCCHHHh--------cCcHHHH-----HHHHHHHH-cCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccC
Confidence 4566788766433 3433221 13344443 1211234788889999999999999987632
Q ss_pred ---------------------cceEEecCCCCCHHHHHHHHHHHHHc-----CCeEEeccccch-hHHHHHHHHHhhccC
Q psy16637 79 ---------------------QIASIAIGSAEGFNQADNVINVAVRS-----GKWVLLKNVHLA-PQWLVQLEKKLHSLQ 131 (264)
Q Consensus 79 ---------------------~~~~islG~~~~~~~a~~~l~~a~~~-----G~WllL~N~hL~-~~~l~~L~~~l~~~~ 131 (264)
.+..+.-.+..+.+.++.+++.+... ..-++++++|.. .+-...|.+.+++
T Consensus 77 ~~~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEe-- 154 (507)
T PRK06645 77 TTIKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEE-- 154 (507)
T ss_pred cCcCCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhh--
Confidence 11222222333456677777776533 456788999986 3344566666653
Q ss_pred CCCCceEEEecCCCCCChHhHhhcceeeeecCCc--cHHHHHHHHh
Q psy16637 132 PHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPP--GIKANLLRTF 175 (264)
Q Consensus 132 ~h~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p~--~lk~~l~~~~ 175 (264)
+.+..++++.++....+|..+..+|..+.+.+++ .+...+.+..
T Consensus 155 pp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~ 200 (507)
T PRK06645 155 PPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYIT 200 (507)
T ss_pred cCCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHH
Confidence 4455676666655668999999999988876532 3444444433
No 39
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.44 E-value=5.7 Score=38.86 Aligned_cols=152 Identities=17% Similarity=0.227 Sum_probs=91.9
Q ss_pred hHHhhcCCcHHHHHHHHHHHHhCcccccccCCCCChhHHhhhhcCCCcc--EEEEeCCCCCChhHHHHHHHHhcc-----
Q psy16637 6 FIQALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVP--AVLCSVPGYDASGRVDDLAAELGK----- 78 (264)
Q Consensus 6 l~r~lrpDr~~~a~~~~v~~~lg~~~~~~~~~~~~L~~~~~~~s~~~~P--ii~i~s~g~DP~~~i~~lA~~~~~----- 78 (264)
|.+-+||..+. ++.|.+.+. -.|...+. ..+.| ++|.-++|+.-|.....+|+....
T Consensus 4 l~~KyRP~~~~--------dvvGq~~v~-----~~L~~~i~---~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~ 67 (504)
T PRK14963 4 LYQRARPITFD--------EVVGQEHVK-----EVLLAALR---QGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDP 67 (504)
T ss_pred HHHhhCCCCHH--------HhcChHHHH-----HHHHHHHH---cCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCC
Confidence 45677887653 344443221 12444443 22334 588889999999999999887631
Q ss_pred ------------------cceEEecCCCCCHHHHHHHHHHHH-----HcCCeEEeccccchh-HHHHHHHHHhhccCCCC
Q psy16637 79 ------------------QIASIAIGSAEGFNQADNVINVAV-----RSGKWVLLKNVHLAP-QWLVQLEKKLHSLQPHA 134 (264)
Q Consensus 79 ------------------~~~~islG~~~~~~~a~~~l~~a~-----~~G~WllL~N~hL~~-~~l~~L~~~l~~~~~h~ 134 (264)
.+..+.-....+.+.++.+.+.+. .+...|+|+++|... .-+..|.+.++ ++.+
T Consensus 68 ~~cg~C~sc~~i~~~~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LE--ep~~ 145 (504)
T PRK14963 68 KPCGECESCLAVRRGAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLE--EPPE 145 (504)
T ss_pred CCCCcChhhHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHH--hCCC
Confidence 133343322334445555544433 245688899998663 33444544444 3445
Q ss_pred CceEEEecCCCCCChHhHhhcceeeeecCC--ccHHHHHHHHh
Q psy16637 135 NFRLFLTMEINPKVPVNLLRAGRIFVFEPP--PGIKANLLRTF 175 (264)
Q Consensus 135 ~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p--~~lk~~l~~~~ 175 (264)
+..+++++.....++..+..+|..+.+.++ ..+...+.+..
T Consensus 146 ~t~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~ 188 (504)
T PRK14963 146 HVIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLL 188 (504)
T ss_pred CEEEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHH
Confidence 667777776667888899999999999864 34455555544
No 40
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=90.11 E-value=4.9 Score=41.03 Aligned_cols=155 Identities=17% Similarity=0.235 Sum_probs=92.6
Q ss_pred hhhHHhhcCCcHHHHHHHHHHHHhCcccccccCCCCChhHHhhhhcCCCccEEEEeCCCCCChhHHHHHHHHhccc----
Q psy16637 4 LLFIQALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVPAVLCSVPGYDASGRVDDLAAELGKQ---- 79 (264)
Q Consensus 4 lll~r~lrpDr~~~a~~~~v~~~lg~~~~~~~~~~~~L~~~~~~~s~~~~Pii~i~s~g~DP~~~i~~lA~~~~~~---- 79 (264)
+.+.+-.||..+.. +.|-+.+. -.|...+. ...-....||..++|+.-+.....+|+.....
T Consensus 6 ~~l~~KyRP~~f~d--------IiGQe~~v-----~~L~~aI~-~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~ 71 (725)
T PRK07133 6 KALYRKYRPKTFDD--------IVGQDHIV-----QTLKNIIK-SNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTD 71 (725)
T ss_pred hhHHHHhCCCCHHH--------hcCcHHHH-----HHHHHHHH-cCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCC
Confidence 45677788887643 33543321 12445553 11112236788888998888888888775311
Q ss_pred ---------------ceEEecC--CCCCHHHHHHHHHHHHHc---C--CeEEeccccch-hHHHHHHHHHhhccCCCCCc
Q psy16637 80 ---------------IASIAIG--SAEGFNQADNVINVAVRS---G--KWVLLKNVHLA-PQWLVQLEKKLHSLQPHANF 136 (264)
Q Consensus 80 ---------------~~~islG--~~~~~~~a~~~l~~a~~~---G--~WllL~N~hL~-~~~l~~L~~~l~~~~~h~~F 136 (264)
...+-+. +..+.+.++.+++.+... | .-++++++|.. .+-...|-+.|++ +.+..
T Consensus 72 ~~~pC~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEE--PP~~t 149 (725)
T PRK07133 72 LLEPCQECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEE--PPKHV 149 (725)
T ss_pred CCCchhHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhc--CCCce
Confidence 1112111 112345566766665533 3 34667999977 3445566666653 44566
Q ss_pred eEEEecCCCCCChHhHhhcceeeeecCC--ccHHHHHHHH
Q psy16637 137 RLFLTMEINPKVPVNLLRAGRIFVFEPP--PGIKANLLRT 174 (264)
Q Consensus 137 RL~lt~~~~~~~P~~lL~~s~kv~~e~p--~~lk~~l~~~ 174 (264)
.+++++.....+|..+..+|..+.+.++ ..+...+.+.
T Consensus 150 ifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~i 189 (725)
T PRK07133 150 IFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFI 189 (725)
T ss_pred EEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHH
Confidence 7777776566899999999999999865 3445555543
No 41
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.98 E-value=4.4 Score=40.24 Aligned_cols=142 Identities=18% Similarity=0.277 Sum_probs=88.1
Q ss_pred hhHHhhcCCcHHHHHHHHHHHHhCcccccccCCCCChhHHhhhhcCCCcc--EEEEeCCCCCChhHHHHHHHHhcc----
Q psy16637 5 LFIQALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVP--AVLCSVPGYDASGRVDDLAAELGK---- 78 (264)
Q Consensus 5 ll~r~lrpDr~~~a~~~~v~~~lg~~~~~~~~~~~~L~~~~~~~s~~~~P--ii~i~s~g~DP~~~i~~lA~~~~~---- 78 (264)
-|.+-+||..+. +..|-+.+. -.|...+. + .+.| .||.-++|..-+.....+|+....
T Consensus 5 ~l~~k~RP~~f~--------~iiGq~~v~-----~~L~~~i~--~-~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~ 68 (576)
T PRK14965 5 VLARKYRPQTFS--------DLTGQEHVS-----RTLQNAID--T-GRVAHAFLFTGARGVGKTSTARILAKALNCEQGL 68 (576)
T ss_pred HHHHHhCCCCHH--------HccCcHHHH-----HHHHHHHH--c-CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCC
Confidence 466778998764 344543221 13344443 2 2334 567788899999988889887531
Q ss_pred --------------------cceEEecCCCCCHHHHHHHHHHHHHc---C--CeEEeccccchh-HHHHHHHHHhhccCC
Q psy16637 79 --------------------QIASIAIGSAEGFNQADNVINVAVRS---G--KWVLLKNVHLAP-QWLVQLEKKLHSLQP 132 (264)
Q Consensus 79 --------------------~~~~islG~~~~~~~a~~~l~~a~~~---G--~WllL~N~hL~~-~~l~~L~~~l~~~~~ 132 (264)
.+..+.-.+..+.+.++.+++.+... | .-++++++|... .-.+.|.++|++ +
T Consensus 69 ~~~~c~~c~~c~~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEe--p 146 (576)
T PRK14965 69 TAEPCNVCPPCVEITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEE--P 146 (576)
T ss_pred CCCCCCccHHHHHHhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHc--C
Confidence 12223212223445666666554422 2 457889999774 445566666663 4
Q ss_pred CCCceEEEecCCCCCChHhHhhcceeeeecCC
Q psy16637 133 HANFRLFLTMEINPKVPVNLLRAGRIFVFEPP 164 (264)
Q Consensus 133 h~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p 164 (264)
.++..++++++...++|..++.+|..+.+.++
T Consensus 147 p~~~~fIl~t~~~~kl~~tI~SRc~~~~f~~l 178 (576)
T PRK14965 147 PPHVKFIFATTEPHKVPITILSRCQRFDFRRI 178 (576)
T ss_pred CCCeEEEEEeCChhhhhHHHHHhhhhhhcCCC
Confidence 45667777776667899999999999888754
No 42
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=89.73 E-value=7.3 Score=35.89 Aligned_cols=110 Identities=16% Similarity=0.152 Sum_probs=76.6
Q ss_pred cEEEEeCCCCCChhHHHHHHHHhcc------------------------cceEEec-CCC--CCHHHHHHHHHHHHHc--
Q psy16637 54 PAVLCSVPGYDASGRVDDLAAELGK------------------------QIASIAI-GSA--EGFNQADNVINVAVRS-- 104 (264)
Q Consensus 54 Pii~i~s~g~DP~~~i~~lA~~~~~------------------------~~~~isl-G~~--~~~~~a~~~l~~a~~~-- 104 (264)
.++|..++|..-+.....+|+.... .+..+.- +.+ -+++.++.+++.+...
T Consensus 24 a~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~~~~ 103 (328)
T PRK05707 24 AYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQTAQ 103 (328)
T ss_pred eeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhhccc
Confidence 3667777788888888888876521 2344432 222 2456777777666543
Q ss_pred -CCe--EEeccccch-hHHHHHHHHHhhccCCCCCceEEEecCCCCCChHhHhhcceeeeecCCc
Q psy16637 105 -GKW--VLLKNVHLA-PQWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPP 165 (264)
Q Consensus 105 -G~W--llL~N~hL~-~~~l~~L~~~l~~~~~h~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p~ 165 (264)
|+| ++++++|-. .+-.+.|-+.+++ +.++..++|+++....++..+..+|.++.+.+|+
T Consensus 104 ~~~~kv~iI~~a~~m~~~aaNaLLK~LEE--Pp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~ 166 (328)
T PRK05707 104 LGGRKVVLIEPAEAMNRNAANALLKSLEE--PSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPS 166 (328)
T ss_pred cCCCeEEEECChhhCCHHHHHHHHHHHhC--CCCCeEEEEEECChhhCcHHHHhhceeeeCCCcC
Confidence 444 777999876 5566677777764 4567788888888888999999999999997653
No 43
>PRK04132 replication factor C small subunit; Provisional
Probab=89.62 E-value=4.7 Score=41.89 Aligned_cols=109 Identities=20% Similarity=0.273 Sum_probs=76.1
Q ss_pred ChhHHHHHHHHh-c----ccceEEecCCCCCHHHHHHHHHHHHHc----C---CeEEeccccchh-HHHHHHHHHhhccC
Q psy16637 65 ASGRVDDLAAEL-G----KQIASIAIGSAEGFNQADNVINVAVRS----G---KWVLLKNVHLAP-QWLVQLEKKLHSLQ 131 (264)
Q Consensus 65 P~~~i~~lA~~~-~----~~~~~islG~~~~~~~a~~~l~~a~~~----G---~WllL~N~hL~~-~~l~~L~~~l~~~~ 131 (264)
-|..+..+|++. | .++..++=.+..+.+.++..++.+... | .-++|+++|... +--..|-+.++ +
T Consensus 579 KTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt~~AQnALLk~lE--e 656 (846)
T PRK04132 579 NTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTME--M 656 (846)
T ss_pred HHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCCHHHHHHHHHHhh--C
Confidence 467788888886 2 234455444433567778888765532 2 478889999874 33344555554 3
Q ss_pred CCCCceEEEecCCCCCChHhHhhcceeeeecCCc--cHHHHHHHHh
Q psy16637 132 PHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPP--GIKANLLRTF 175 (264)
Q Consensus 132 ~h~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p~--~lk~~l~~~~ 175 (264)
+..+.+++++|++...++..+..+|..+.+.+++ .+...+.++.
T Consensus 657 p~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~ 702 (846)
T PRK04132 657 FSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIA 702 (846)
T ss_pred CCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHH
Confidence 4578899999999999999999999999999875 5555565544
No 44
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=89.49 E-value=5.1 Score=36.58 Aligned_cols=123 Identities=14% Similarity=0.099 Sum_probs=77.1
Q ss_pred CccEEEEeCCCCCChhHHHHHHHHhcccceEEecCCCCCHHHHHHHHHHHHHcCCeEEeccccchhHHH-HHHHHHhhcc
Q psy16637 52 NVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAEGFNQADNVINVAVRSGKWVLLKNVHLAPQWL-VQLEKKLHSL 130 (264)
Q Consensus 52 ~~Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~~~~~~~a~~~l~~a~~~G~WllL~N~hL~~~~l-~~L~~~l~~~ 130 (264)
..+++|.-++|+.-|.....+|...+.++..++-...+....... +-..+..|..|+++.+|....-. ..|...++..
T Consensus 51 ~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~~~~l~~-~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~ 129 (328)
T PRK00080 51 LDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKPGDLAA-ILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDF 129 (328)
T ss_pred CCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccChHHHHH-HHHhcccCCEEEEecHhhcchHHHHHHHHHHHhc
Confidence 346888899999999999999999987766554332222112222 33456789999999999764322 2222222211
Q ss_pred C----------------CCCCceEEEecCCCCCChHhHhhcc-eeeeecC--CccHHHHHHHHh
Q psy16637 131 Q----------------PHANFRLFLTMEINPKVPVNLLRAG-RIFVFEP--PPGIKANLLRTF 175 (264)
Q Consensus 131 ~----------------~h~~FRL~lt~~~~~~~P~~lL~~s-~kv~~e~--p~~lk~~l~~~~ 175 (264)
. .-+.|.++.+++....++..+..++ ..+.+++ +..++..+.+..
T Consensus 130 ~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~ 193 (328)
T PRK00080 130 RLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSA 193 (328)
T ss_pred ceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHH
Confidence 0 1256889998888888888887775 4455554 344555555443
No 45
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=89.24 E-value=7.9 Score=35.53 Aligned_cols=110 Identities=16% Similarity=0.125 Sum_probs=73.0
Q ss_pred EEEEeCCCCCChhHHHHHHHHhc------------------------ccceEEec-CCCCCHHHHHHHHHHHH---HcC-
Q psy16637 55 AVLCSVPGYDASGRVDDLAAELG------------------------KQIASIAI-GSAEGFNQADNVINVAV---RSG- 105 (264)
Q Consensus 55 ii~i~s~g~DP~~~i~~lA~~~~------------------------~~~~~isl-G~~~~~~~a~~~l~~a~---~~G- 105 (264)
.+|..++|..-+.....+|+..- ..+..+.. |..-..+.++..++... -.|
T Consensus 31 ~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~ 110 (329)
T PRK08058 31 YLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESN 110 (329)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccC
Confidence 46667777777777777776641 12333322 22223456666666554 223
Q ss_pred -CeEEeccccch-hHHHHHHHHHhhccCCCCCceEEEecCCCCCChHhHhhcceeeeecCCcc
Q psy16637 106 -KWVLLKNVHLA-PQWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPPG 166 (264)
Q Consensus 106 -~WllL~N~hL~-~~~l~~L~~~l~~~~~h~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p~~ 166 (264)
..++++++|.. ..-.+.|-+.++ ++.++-.++++++....++..+..+|..+.+.+|+.
T Consensus 111 ~kvviI~~a~~~~~~a~NaLLK~LE--EPp~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~ 171 (329)
T PRK08058 111 KKVYIIEHADKMTASAANSLLKFLE--EPSGGTTAILLTENKHQILPTILSRCQVVEFRPLPP 171 (329)
T ss_pred ceEEEeehHhhhCHHHHHHHHHHhc--CCCCCceEEEEeCChHhCcHHHHhhceeeeCCCCCH
Confidence 47888999876 345556666666 466777888888777789999999999999987654
No 46
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.07 E-value=7 Score=38.65 Aligned_cols=155 Identities=21% Similarity=0.253 Sum_probs=92.7
Q ss_pred hhHHhhcCCcHHHHHHHHHHHHhCcccccccCCCCChhHHhhhhcCCCccEEEEeCCCCCChhHHHHHHHHhcc------
Q psy16637 5 LFIQALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVPAVLCSVPGYDASGRVDDLAAELGK------ 78 (264)
Q Consensus 5 ll~r~lrpDr~~~a~~~~v~~~lg~~~~~~~~~~~~L~~~~~~~s~~~~Pii~i~s~g~DP~~~i~~lA~~~~~------ 78 (264)
-|.+-+||..+.. +.|-+... -.|...+. .......+||.-++|+.-|.....+|+....
T Consensus 5 ~La~KyRP~~f~d--------iiGq~~~v-----~~L~~~i~-~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~ 70 (546)
T PRK14957 5 ALARKYRPQSFAE--------VAGQQHAL-----NSLVHALE-TQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTA 70 (546)
T ss_pred hHHHHHCcCcHHH--------hcCcHHHH-----HHHHHHHH-cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC
Confidence 4677789987743 34544322 12455553 2222224678889999999999999986531
Q ss_pred ------------------cceEEecCCCCCHHHHHHHHHHHHH---cC--CeEEeccccch-hHHHHHHHHHhhccCCCC
Q psy16637 79 ------------------QIASIAIGSAEGFNQADNVINVAVR---SG--KWVLLKNVHLA-PQWLVQLEKKLHSLQPHA 134 (264)
Q Consensus 79 ------------------~~~~islG~~~~~~~a~~~l~~a~~---~G--~WllL~N~hL~-~~~l~~L~~~l~~~~~h~ 134 (264)
.+..+.-.+.-+.+.++.+++.+.. .| .-++++++|.. ..-.+.|-+.+++ +.+
T Consensus 71 ~pCg~C~sC~~i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEe--pp~ 148 (546)
T PRK14957 71 EPCNKCENCVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEE--PPE 148 (546)
T ss_pred CCCcccHHHHHHhcCCCCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhc--CCC
Confidence 1222322122334455566655442 23 46777999876 4455666666764 334
Q ss_pred CceEEEecCCCCCChHhHhhcceeeeecCCc--cHHHHHHHHh
Q psy16637 135 NFRLFLTMEINPKVPVNLLRAGRIFVFEPPP--GIKANLLRTF 175 (264)
Q Consensus 135 ~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p~--~lk~~l~~~~ 175 (264)
.-++++++.....+|..++.+|..+.+.+++ .+...+.+.+
T Consensus 149 ~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il 191 (546)
T PRK14957 149 YVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIIL 191 (546)
T ss_pred CceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHH
Confidence 4455655554556777799999999998753 4555566544
No 47
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=88.75 E-value=7 Score=35.64 Aligned_cols=118 Identities=19% Similarity=0.263 Sum_probs=72.7
Q ss_pred cEEEEeCCCCCChhHHHHHHHHhcc------------------------cceEEecCCCCCHHHHHHHHHHHHHc-----
Q psy16637 54 PAVLCSVPGYDASGRVDDLAAELGK------------------------QIASIAIGSAEGFNQADNVINVAVRS----- 104 (264)
Q Consensus 54 Pii~i~s~g~DP~~~i~~lA~~~~~------------------------~~~~islG~~~~~~~a~~~l~~a~~~----- 104 (264)
.++|.-++|..-+.....+|+.... .+..+.=+...+...++.+++.+...
T Consensus 38 ~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~ 117 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGK 117 (355)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeeccccCCHHHHHHHHHHHhcCcccCC
Confidence 3677889999999999999887531 12222222223334456666655433
Q ss_pred CCeEEeccccch-hHHHHHHHHHhhccCCCCCceEEEecCCCCCChHhHhhcceeeeecCCcc--HHHHHHH
Q psy16637 105 GKWVLLKNVHLA-PQWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPPG--IKANLLR 173 (264)
Q Consensus 105 G~WllL~N~hL~-~~~l~~L~~~l~~~~~h~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p~~--lk~~l~~ 173 (264)
...|++++++.. ..-.+.|-+.++ ++.++..++++++....++..+..+|..+.+.+|+. +...+.+
T Consensus 118 ~~vviidea~~l~~~~~~~Ll~~le--~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~ 187 (355)
T TIGR02397 118 YKVYIIDEVHMLSKSAFNALLKTLE--EPPEHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKK 187 (355)
T ss_pred ceEEEEeChhhcCHHHHHHHHHHHh--CCccceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHH
Confidence 246778998755 333445555554 345677777777655567888999999988876533 3444443
No 48
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=88.49 E-value=7.9 Score=35.36 Aligned_cols=119 Identities=19% Similarity=0.141 Sum_probs=85.0
Q ss_pred cCCCccEEEEeCCCCCChhHHHHHHHHhcccceEEecCCCCCHHHHHHHHHHHHH---cC-----------C---eEEec
Q psy16637 49 LRGNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAEGFNQADNVINVAVR---SG-----------K---WVLLK 111 (264)
Q Consensus 49 s~~~~Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~~~~~~~a~~~l~~a~~---~G-----------~---WllL~ 111 (264)
-....|+++.-.||.-.|..+..+|+..+.++..|.+.++-..+.+.....-..+ .+ . -++++
T Consensus 40 ~~~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~D 119 (329)
T COG0714 40 LLAGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLD 119 (329)
T ss_pred HHcCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEe
Confidence 3456799999999999999999999999988988988766432222222111111 21 2 56667
Q ss_pred cccch-hHHHHHHHHHhhc----------cCCCCCceEEEecCC-----CCCChHhHhhcc-eeeeecCCccH
Q psy16637 112 NVHLA-PQWLVQLEKKLHS----------LQPHANFRLFLTMEI-----NPKVPVNLLRAG-RIFVFEPPPGI 167 (264)
Q Consensus 112 N~hL~-~~~l~~L~~~l~~----------~~~h~~FRL~lt~~~-----~~~~P~~lL~~s-~kv~~e~p~~l 167 (264)
.+.-+ +.....|-+.++. ...++.|.++.|.+| ...+|..++.++ .++....|..-
T Consensus 120 EInra~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~ 192 (329)
T COG0714 120 EINRAPPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSE 192 (329)
T ss_pred ccccCCHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHhhEEEEEecCCCCch
Confidence 77777 4555666665543 346799999999984 456899999999 88888888554
No 49
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=88.30 E-value=13 Score=30.80 Aligned_cols=109 Identities=15% Similarity=0.148 Sum_probs=68.8
Q ss_pred EEEEeCCCCCChhHHHHHHHHhcc------------------------cceEEecC-CCCCHHHHHHHHHHHHH---cC-
Q psy16637 55 AVLCSVPGYDASGRVDDLAAELGK------------------------QIASIAIG-SAEGFNQADNVINVAVR---SG- 105 (264)
Q Consensus 55 ii~i~s~g~DP~~~i~~lA~~~~~------------------------~~~~islG-~~~~~~~a~~~l~~a~~---~G- 105 (264)
++|..++|..-+.....+|+.... .+..+... ..-+.+.++.+++.+.. .|
T Consensus 17 ~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~ 96 (188)
T TIGR00678 17 YLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRTPQESG 96 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccCcccCC
Confidence 666778888888888888877521 12333322 12234566666666554 23
Q ss_pred -CeEEeccccch-hHHHHHHHHHhhccCCCCCceEEEecCCCCCChHhHhhcceeeeecCCc
Q psy16637 106 -KWVLLKNVHLA-PQWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPP 165 (264)
Q Consensus 106 -~WllL~N~hL~-~~~l~~L~~~l~~~~~h~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p~ 165 (264)
.-++++|+|-. ..-.+.|.+.++. +.++-.+.++++....++..+..+|..+.+.++.
T Consensus 97 ~kviiide~~~l~~~~~~~Ll~~le~--~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~ 156 (188)
T TIGR00678 97 RRVVIIEDAERMNEAAANALLKTLEE--PPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLS 156 (188)
T ss_pred eEEEEEechhhhCHHHHHHHHHHhcC--CCCCeEEEEEECChHhChHHHHhhcEEeeCCCCC
Confidence 35667999876 3445566666654 3445566666655568888899999988888654
No 50
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.25 E-value=9.2 Score=38.37 Aligned_cols=117 Identities=18% Similarity=0.226 Sum_probs=75.8
Q ss_pred EEEEeCCCCCChhHHHHHHHHhc-------------------------ccceEEecCCCCCHHHHHHHHHHHHHc-----
Q psy16637 55 AVLCSVPGYDASGRVDDLAAELG-------------------------KQIASIAIGSAEGFNQADNVINVAVRS----- 104 (264)
Q Consensus 55 ii~i~s~g~DP~~~i~~lA~~~~-------------------------~~~~~islG~~~~~~~a~~~l~~a~~~----- 104 (264)
+||.-++|..-+.....+|+... .++..+.-++..+.+.++.+++++...
T Consensus 42 yLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~ 121 (614)
T PRK14971 42 YLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGK 121 (614)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCC
Confidence 67778888887776666776542 123333322223345666777665433
Q ss_pred CCeEEeccccch-hHHHHHHHHHhhccCCCCCceEEEecCCCCCChHhHhhcceeeeecCCc--cHHHHHHH
Q psy16637 105 GKWVLLKNVHLA-PQWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPP--GIKANLLR 173 (264)
Q Consensus 105 G~WllL~N~hL~-~~~l~~L~~~l~~~~~h~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p~--~lk~~l~~ 173 (264)
-..++++++|.. .+-.+.|.+++++ +.++.+++++++....+...|..+|..+.+.+++ .++..+.+
T Consensus 122 ~KVvIIdea~~Ls~~a~naLLK~LEe--pp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ 191 (614)
T PRK14971 122 YKIYIIDEVHMLSQAAFNAFLKTLEE--PPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQY 191 (614)
T ss_pred cEEEEEECcccCCHHHHHHHHHHHhC--CCCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHH
Confidence 247888999987 4455667777764 4456678777766678888999999999988653 34444443
No 51
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=88.05 E-value=8.3 Score=38.56 Aligned_cols=153 Identities=20% Similarity=0.259 Sum_probs=92.0
Q ss_pred hHHhhcCCcHHHHHHHHHHHHhCcccccccCCCCChhHHhhhhcCCCccEEEEeCCCCCChhHHHHHHHHhccc------
Q psy16637 6 FIQALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVPAVLCSVPGYDASGRVDDLAAELGKQ------ 79 (264)
Q Consensus 6 l~r~lrpDr~~~a~~~~v~~~lg~~~~~~~~~~~~L~~~~~~~s~~~~Pii~i~s~g~DP~~~i~~lA~~~~~~------ 79 (264)
+.+-.||..+. +..|-+.+. -.|.+.+. ...-...+||.-++|+.-+.....+|+.....
T Consensus 14 la~KyRP~~f~--------dliGq~~~v-----~~L~~~~~-~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~ 79 (598)
T PRK09111 14 LARKYRPQTFD--------DLIGQEAMV-----RTLTNAFE-TGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDG 79 (598)
T ss_pred HHhhhCCCCHH--------HhcCcHHHH-----HHHHHHHH-cCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccC
Confidence 44556776543 444543221 12445553 22222247788888999998888888876321
Q ss_pred -----------------------ceEEecCCCCCHHHHHHHHHHHHH-----cCCeEEeccccchh-HHHHHHHHHhhcc
Q psy16637 80 -----------------------IASIAIGSAEGFNQADNVINVAVR-----SGKWVLLKNVHLAP-QWLVQLEKKLHSL 130 (264)
Q Consensus 80 -----------------------~~~islG~~~~~~~a~~~l~~a~~-----~G~WllL~N~hL~~-~~l~~L~~~l~~~ 130 (264)
+..+.-.+.-+++.++.+++.+.. ...-++++++|... .-.+.|.+.|+
T Consensus 80 ~~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLE-- 157 (598)
T PRK09111 80 GPTIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLE-- 157 (598)
T ss_pred CCccccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHH--
Confidence 111211222345566667665542 23567889998774 44556666666
Q ss_pred CCCCCceEEEecCCCCCChHhHhhcceeeeecCCc--cHHHHHHHH
Q psy16637 131 QPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPP--GIKANLLRT 174 (264)
Q Consensus 131 ~~h~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p~--~lk~~l~~~ 174 (264)
++.++.+++++++..+++|..+..+|..+.+..++ .+...+.+.
T Consensus 158 ePp~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i 203 (598)
T PRK09111 158 EPPPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRI 203 (598)
T ss_pred hCCCCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHH
Confidence 45566788777766667888899999999887643 444444443
No 52
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=87.93 E-value=8 Score=38.15 Aligned_cols=152 Identities=18% Similarity=0.296 Sum_probs=92.1
Q ss_pred hHHhhcCCcHHHHHHHHHHHHhCcccccccCCCCChhHHhhhhcCCCcc--EEEEeCCCCCChhHHHHHHHHhc----c-
Q psy16637 6 FIQALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVP--AVLCSVPGYDASGRVDDLAAELG----K- 78 (264)
Q Consensus 6 l~r~lrpDr~~~a~~~~v~~~lg~~~~~~~~~~~~L~~~~~~~s~~~~P--ii~i~s~g~DP~~~i~~lA~~~~----~- 78 (264)
+.+-.||..+. ++.|-+.+. -.|...+. ..+.| .||..++|..-+.....+|+... .
T Consensus 4 l~~KyRP~~fd--------eiiGqe~v~-----~~L~~~I~---~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~ 67 (535)
T PRK08451 4 LALKYRPKHFD--------ELIGQESVS-----KTLSLALD---NNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPS 67 (535)
T ss_pred HHHHHCCCCHH--------HccCcHHHH-----HHHHHHHH---cCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCC
Confidence 44567777653 344533221 13444453 23445 47788889999998998888752 1
Q ss_pred -----------------cceEEecCCC--CCHHHHHHHHHHHHHc---C--CeEEeccccchh-HHHHHHHHHhhccCCC
Q psy16637 79 -----------------QIASIAIGSA--EGFNQADNVINVAVRS---G--KWVLLKNVHLAP-QWLVQLEKKLHSLQPH 133 (264)
Q Consensus 79 -----------------~~~~islG~~--~~~~~a~~~l~~a~~~---G--~WllL~N~hL~~-~~l~~L~~~l~~~~~h 133 (264)
....+-++.. .+.+.++..++.+... | .-++++++|... .-.+.|-+.++. +.
T Consensus 68 ~~pC~~C~~C~~~~~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEE--pp 145 (535)
T PRK08451 68 STPCDTCIQCQSALENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEE--PP 145 (535)
T ss_pred CCCCcccHHHHHHhhcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhh--cC
Confidence 1223334332 2355666666653322 3 447779999874 455566666664 45
Q ss_pred CCceEEEecCCCCCChHhHhhcceeeeecCCc--cHHHHHHHHh
Q psy16637 134 ANFRLFLTMEINPKVPVNLLRAGRIFVFEPPP--GIKANLLRTF 175 (264)
Q Consensus 134 ~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p~--~lk~~l~~~~ 175 (264)
+..++++++.....+|..+..+|..+.+.+++ .+...+.+..
T Consensus 146 ~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il 189 (535)
T PRK08451 146 SYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTIL 189 (535)
T ss_pred CceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHH
Confidence 66677777765578999999999999998754 3344444433
No 53
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=87.82 E-value=20 Score=32.41 Aligned_cols=123 Identities=14% Similarity=0.181 Sum_probs=78.5
Q ss_pred cEEEEeCCCCCChhHHHHHHHHhc--------ccceEEec--CCCCCHHHHHHHHHHHHHc---C--CeEEeccccch-h
Q psy16637 54 PAVLCSVPGYDASGRVDDLAAELG--------KQIASIAI--GSAEGFNQADNVINVAVRS---G--KWVLLKNVHLA-P 117 (264)
Q Consensus 54 Pii~i~s~g~DP~~~i~~lA~~~~--------~~~~~isl--G~~~~~~~a~~~l~~a~~~---G--~WllL~N~hL~-~ 117 (264)
..+|..++|..-+.....+|+... ..+..+.- |..-+.+.++.+++.+... | .-++++++|.. .
T Consensus 28 a~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~ 107 (313)
T PRK05564 28 AHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTE 107 (313)
T ss_pred eEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCH
Confidence 456777788888888889988641 12333322 3323345666666643322 2 46777998766 4
Q ss_pred HHHHHHHHHhhccCCCCCceEEEecCCCCCChHhHhhcceeeeecCC--ccHHHHHHHHhcCC
Q psy16637 118 QWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPP--PGIKANLLRTFSTV 178 (264)
Q Consensus 118 ~~l~~L~~~l~~~~~h~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p--~~lk~~l~~~~~~~ 178 (264)
+-.+.|-+.++ ++.++-.++|+++....++..+..+|..+.+.++ ..++.-+.+.+..+
T Consensus 108 ~a~naLLK~LE--epp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~~~~ 168 (313)
T PRK05564 108 QAQNAFLKTIE--EPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISYKYNDI 168 (313)
T ss_pred HHHHHHHHHhc--CCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHhcCC
Confidence 44556767776 3455667777776666888899999999999875 44555555544333
No 54
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=87.55 E-value=15 Score=32.73 Aligned_cols=119 Identities=18% Similarity=0.215 Sum_probs=73.6
Q ss_pred cEEEEeCCCCCChhHHHHHHHHhcc---cceEEec--CCCCCHHHHHHHHHHHHH-------cCCeEEeccccch-hHHH
Q psy16637 54 PAVLCSVPGYDASGRVDDLAAELGK---QIASIAI--GSAEGFNQADNVINVAVR-------SGKWVLLKNVHLA-PQWL 120 (264)
Q Consensus 54 Pii~i~s~g~DP~~~i~~lA~~~~~---~~~~isl--G~~~~~~~a~~~l~~a~~-------~G~WllL~N~hL~-~~~l 120 (264)
++++.-++|+.-+..+..+++.... ....+.+ +...+.......+..... ....|+++++|.- ....
T Consensus 40 ~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~~ 119 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDAQ 119 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccchHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHHHH
Confidence 4777788899999999999887521 1223333 232222233334433332 2358999999766 3444
Q ss_pred HHHHHHhhccCCCCCceEEEecCCCCCChHhHhhcceeeeecCCc--cHHHHHHHH
Q psy16637 121 VQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPP--GIKANLLRT 174 (264)
Q Consensus 121 ~~L~~~l~~~~~h~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p~--~lk~~l~~~ 174 (264)
..|.+.++.. .++-+++++++....+...+..+|..+.+.+++ .+++.+.+.
T Consensus 120 ~~L~~~le~~--~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~ 173 (319)
T PRK00440 120 QALRRTMEMY--SQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYI 173 (319)
T ss_pred HHHHHHHhcC--CCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHH
Confidence 5666666543 344578888877677888888999988887643 344444443
No 55
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.24 E-value=12 Score=37.64 Aligned_cols=108 Identities=18% Similarity=0.216 Sum_probs=72.2
Q ss_pred EEEEeCCCCCChhHHHHHHHHhcc--------------------------cceEEecCCCCCHHHHHHHHHHHHHc---C
Q psy16637 55 AVLCSVPGYDASGRVDDLAAELGK--------------------------QIASIAIGSAEGFNQADNVINVAVRS---G 105 (264)
Q Consensus 55 ii~i~s~g~DP~~~i~~lA~~~~~--------------------------~~~~islG~~~~~~~a~~~l~~a~~~---G 105 (264)
+||..++|..-+.....+|+..+. .+..+.-+...+++.++.+++.+... |
T Consensus 41 ~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~ 120 (620)
T PRK14948 41 YLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQA 120 (620)
T ss_pred EEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcC
Confidence 677788899999999999988642 11222222234456777777766533 3
Q ss_pred --CeEEeccccchh-HHHHHHHHHhhccCCCCCceEEEecCCCCCChHhHhhcceeeeecCC
Q psy16637 106 --KWVLLKNVHLAP-QWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPP 164 (264)
Q Consensus 106 --~WllL~N~hL~~-~~l~~L~~~l~~~~~h~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p 164 (264)
.-++++++|... .-.+.|-+.++ ++..+..+++++.....+...|..+|..+.+..+
T Consensus 121 ~~KViIIDEad~Lt~~a~naLLK~LE--ePp~~tvfIL~t~~~~~llpTIrSRc~~~~f~~l 180 (620)
T PRK14948 121 RWKVYVIDECHMLSTAAFNALLKTLE--EPPPRVVFVLATTDPQRVLPTIISRCQRFDFRRI 180 (620)
T ss_pred CceEEEEECccccCHHHHHHHHHHHh--cCCcCeEEEEEeCChhhhhHHHHhheeEEEecCC
Confidence 356779999763 44556666665 4556677777776555677789999999988644
No 56
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=87.02 E-value=7.3 Score=38.95 Aligned_cols=156 Identities=13% Similarity=0.196 Sum_probs=93.3
Q ss_pred hhhHHhhcCCcHHHHHHHHHHHHhCcccccccCCCCChhHHhhhhcCCCccEEEEeCCCCCChhHHHHHHHHhcc-----
Q psy16637 4 LLFIQALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVPAVLCSVPGYDASGRVDDLAAELGK----- 78 (264)
Q Consensus 4 lll~r~lrpDr~~~a~~~~v~~~lg~~~~~~~~~~~~L~~~~~~~s~~~~Pii~i~s~g~DP~~~i~~lA~~~~~----- 78 (264)
..+.+-+||..+... .|.+.+. -.|.+.+. .......+||..++|+.-+.....+|+....
T Consensus 4 ~~~~~KyRP~~F~dI--------IGQe~iv-----~~L~~aI~-~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~ 69 (605)
T PRK05896 4 ITFYRKYRPHNFKQI--------IGQELIK-----KILVNAIL-NNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKD 69 (605)
T ss_pred hhHHHHhCCCCHHHh--------cCcHHHH-----HHHHHHHH-cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCC
Confidence 346677888877533 3543221 12344443 1222234788889999999988888887531
Q ss_pred -------------------cceEEecCCCCCHHHHHHHHHHHHHc-----CCeEEeccccch-hHHHHHHHHHhhccCCC
Q psy16637 79 -------------------QIASIAIGSAEGFNQADNVINVAVRS-----GKWVLLKNVHLA-PQWLVQLEKKLHSLQPH 133 (264)
Q Consensus 79 -------------------~~~~islG~~~~~~~a~~~l~~a~~~-----G~WllL~N~hL~-~~~l~~L~~~l~~~~~h 133 (264)
.+..+.-.+.-+++.++.+++.+... ..-++++++|.. .+-...|-+.+++ +.
T Consensus 70 ~~~Cg~C~sCr~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEE--Pp 147 (605)
T PRK05896 70 GDCCNSCSVCESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEE--PP 147 (605)
T ss_pred CCCCcccHHHHHHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHh--CC
Confidence 11222211123445566666554433 245788999876 3334556666653 44
Q ss_pred CCceEEEecCCCCCChHhHhhcceeeeecCC--ccHHHHHHHHh
Q psy16637 134 ANFRLFLTMEINPKVPVNLLRAGRIFVFEPP--PGIKANLLRTF 175 (264)
Q Consensus 134 ~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p--~~lk~~l~~~~ 175 (264)
++-.+++++.....++..+..+|..+.+.++ ..+...+.+..
T Consensus 148 ~~tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il 191 (605)
T PRK05896 148 KHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIA 191 (605)
T ss_pred CcEEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHH
Confidence 4557777776667898899999999988765 34555555544
No 57
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=86.88 E-value=8.9 Score=36.06 Aligned_cols=114 Identities=15% Similarity=0.208 Sum_probs=74.1
Q ss_pred CccEEEEeCCCCCChhHHHHHHHHhcccceEEecCC------CCCHHHHHHHHHHHHHc-CCeEEeccccch--------
Q psy16637 52 NVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGS------AEGFNQADNVINVAVRS-GKWVLLKNVHLA-------- 116 (264)
Q Consensus 52 ~~Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~------~~~~~~a~~~l~~a~~~-G~WllL~N~hL~-------- 116 (264)
...+++.-+||+.-|.....+|.+.+..+..++.++ |++......+++.|... +.-|+|++++.-
T Consensus 165 p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~ 244 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSG 244 (389)
T ss_pred CCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCC
Confidence 345888999999999999999998887666554432 12223445566666653 467888998753
Q ss_pred ----hHHHHHHHHHhhcc---CCCCCceEEEecCCCCCChHhHhhc---ceeeeecCCc
Q psy16637 117 ----PQWLVQLEKKLHSL---QPHANFRLFLTMEINPKVPVNLLRA---GRIFVFEPPP 165 (264)
Q Consensus 117 ----~~~l~~L~~~l~~~---~~h~~FRL~lt~~~~~~~P~~lL~~---s~kv~~e~p~ 165 (264)
...-..+.+.+..+ ....+.+++.+++....++..+++. ..++.+..|.
T Consensus 245 ~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~ 303 (389)
T PRK03992 245 TSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPD 303 (389)
T ss_pred CCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCC
Confidence 12222344444333 3446788888888878899998863 2456555543
No 58
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=86.54 E-value=9.2 Score=36.19 Aligned_cols=109 Identities=17% Similarity=0.224 Sum_probs=71.7
Q ss_pred EEEEeCCCCCChhHHHHHHHHhcc-----------------------cceEEec-CCCCCHHHHHHHHHHHHHcC-----
Q psy16637 55 AVLCSVPGYDASGRVDDLAAELGK-----------------------QIASIAI-GSAEGFNQADNVINVAVRSG----- 105 (264)
Q Consensus 55 ii~i~s~g~DP~~~i~~lA~~~~~-----------------------~~~~isl-G~~~~~~~a~~~l~~a~~~G----- 105 (264)
+||.-++|+.-+.....+|+.... .+..+.- |..-+++.++.+++.+....
T Consensus 39 ~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~ 118 (394)
T PRK07940 39 WLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRW 118 (394)
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCc
Confidence 677888899989888888876421 1233322 22233456777777765533
Q ss_pred CeEEeccccch-hHHHHHHHHHhhccCCCCCceEEEecCCCCCChHhHhhcceeeeecCCc
Q psy16637 106 KWVLLKNVHLA-PQWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPP 165 (264)
Q Consensus 106 ~WllL~N~hL~-~~~l~~L~~~l~~~~~h~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p~ 165 (264)
..++++++|.. ..-.+.|-+.+++ +.++=.++|+++....++..+..+|..+.+.+|+
T Consensus 119 kViiIDead~m~~~aanaLLk~LEe--p~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~ 177 (394)
T PRK07940 119 RIVVIEDADRLTERAANALLKAVEE--PPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPS 177 (394)
T ss_pred EEEEEechhhcCHHHHHHHHHHhhc--CCCCCeEEEEECChHHChHHHHhhCeEEECCCCC
Confidence 36788999877 4444566666653 3333345556666668889999999999998763
No 59
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=86.42 E-value=11 Score=33.72 Aligned_cols=117 Identities=20% Similarity=0.233 Sum_probs=77.5
Q ss_pred cEEEEeCCCCCChhHHHHHHHHhc------------------------ccceEEecCCCCC----HHHHHHHHHHHHHc-
Q psy16637 54 PAVLCSVPGYDASGRVDDLAAELG------------------------KQIASIAIGSAEG----FNQADNVINVAVRS- 104 (264)
Q Consensus 54 Pii~i~s~g~DP~~~i~~lA~~~~------------------------~~~~~islG~~~~----~~~a~~~l~~a~~~- 104 (264)
+++|.-++|..-+.....+|+... ..+..+.=..... .+.++++.+.....
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~~~ 105 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEFLSESP 105 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCcchHHHHHHHHHHhccCC
Confidence 488888889999999999998875 2333332222222 23445555544444
Q ss_pred --C--CeEEeccccch-hHHHHHHHHHhhccCCCCCceEEEecCCCCCChHhHhhcceeeeecCCccHHHHHH
Q psy16637 105 --G--KWVLLKNVHLA-PQWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPPGIKANLL 172 (264)
Q Consensus 105 --G--~WllL~N~hL~-~~~l~~L~~~l~~~~~h~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p~~lk~~l~ 172 (264)
| .=|+|+++... .+-...|.+.++ .+.++=+.+++|+...++...+..+|..+.+.+|..++....
T Consensus 106 ~~~~~kviiidead~mt~~A~nallk~lE--ep~~~~~~il~~n~~~~il~tI~SRc~~i~f~~~~~~~~i~~ 176 (325)
T COG0470 106 LEGGYKVVIIDEADKLTEDAANALLKTLE--EPPKNTRFILITNDPSKILPTIRSRCQRIRFKPPSRLEAIAW 176 (325)
T ss_pred CCCCceEEEeCcHHHHhHHHHHHHHHHhc--cCCCCeEEEEEcCChhhccchhhhcceeeecCCchHHHHHHH
Confidence 3 34566888655 444455655554 456677999999866777779999999999998666665544
No 60
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=85.40 E-value=17 Score=36.18 Aligned_cols=153 Identities=15% Similarity=0.216 Sum_probs=92.5
Q ss_pred hhHHhhcCCcHHHHHHHHHHHHhCcccccccCCCCChhHHhhhhcCCCcc--EEEEeCCCCCChhHHHHHHHHhccc---
Q psy16637 5 LFIQALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVP--AVLCSVPGYDASGRVDDLAAELGKQ--- 79 (264)
Q Consensus 5 ll~r~lrpDr~~~a~~~~v~~~lg~~~~~~~~~~~~L~~~~~~~s~~~~P--ii~i~s~g~DP~~~i~~lA~~~~~~--- 79 (264)
-+.|-+||..+. ++.|-+.+. -.|...+. ..+.| .||.-++|..-+.....+|+.....
T Consensus 5 ~l~~kyRP~~f~--------diiGqe~iv-----~~L~~~i~---~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~ 68 (563)
T PRK06647 5 GTATKRRPRDFN--------SLEGQDFVV-----ETLKHSIE---SNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGP 68 (563)
T ss_pred HHHHHhCCCCHH--------HccCcHHHH-----HHHHHHHH---cCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCC
Confidence 466778998774 455654432 13555554 23344 7788889999999999999876421
Q ss_pred -------------------ceEEec-CCC-CCHHHHHHHHHHHH-----HcCCeEEeccccchh-HHHHHHHHHhhccCC
Q psy16637 80 -------------------IASIAI-GSA-EGFNQADNVINVAV-----RSGKWVLLKNVHLAP-QWLVQLEKKLHSLQP 132 (264)
Q Consensus 80 -------------------~~~isl-G~~-~~~~~a~~~l~~a~-----~~G~WllL~N~hL~~-~~l~~L~~~l~~~~~ 132 (264)
+..+-+ |.. .+.+.++.+++.+. .+..-++++++|... .-.+.|.+.++ ++
T Consensus 69 ~~~pC~~C~~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LE--ep 146 (563)
T PRK06647 69 TPMPCGECSSCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIE--EP 146 (563)
T ss_pred CCCCCccchHHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhc--cC
Confidence 111222 111 23344555544333 233567889999874 34455655555 35
Q ss_pred CCCceEEEecCCCCCChHhHhhcceeeeecCC--ccHHHHHHHHh
Q psy16637 133 HANFRLFLTMEINPKVPVNLLRAGRIFVFEPP--PGIKANLLRTF 175 (264)
Q Consensus 133 h~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p--~~lk~~l~~~~ 175 (264)
.+.-.+++++....++|..+..+|..+.+.++ ..+...+.+..
T Consensus 147 p~~~vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~ 191 (563)
T PRK06647 147 PPYIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVC 191 (563)
T ss_pred CCCEEEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHH
Confidence 56667766665456799999999999998864 44444444433
No 61
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=84.37 E-value=6.8 Score=40.35 Aligned_cols=112 Identities=13% Similarity=0.136 Sum_probs=74.7
Q ss_pred cEEEEeCCCCCChhHHHHHHHHhcccceEEecCCCCCH---------------HHHHHHHHHHHHcCCeEEeccccchhH
Q psy16637 54 PAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAEGF---------------NQADNVINVAVRSGKWVLLKNVHLAPQ 118 (264)
Q Consensus 54 Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~~~~~---------------~~a~~~l~~a~~~G~WllL~N~hL~~~ 118 (264)
.++|+-+||+.-|.....+|+..+.++..+++|..... ......+..|......++|+.+|...+
T Consensus 349 ~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~~~~~~villDEidk~~~ 428 (775)
T TIGR00763 349 ILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKTKNPLFLLDEIDKIGS 428 (775)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHhCcCCCEEEEechhhcCC
Confidence 47778899999999999999999888888877643211 122344556655666899999877632
Q ss_pred -----HHHHHHHHhhc-----cCC--------CCCceEEEecCCCCCChHhHhhcceeeeecCCc
Q psy16637 119 -----WLVQLEKKLHS-----LQP--------HANFRLFLTMEINPKVPVNLLRAGRIFVFEPPP 165 (264)
Q Consensus 119 -----~l~~L~~~l~~-----~~~--------h~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p~ 165 (264)
-.+.|-+.++. ..- -++.-+++|++....+|..++.++..+.+.+++
T Consensus 429 ~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~R~~vi~~~~~~ 493 (775)
T TIGR00763 429 SFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRPLLDRMEVIELSGYT 493 (775)
T ss_pred ccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCHHHhCCeeEEecCCCC
Confidence 12233333331 100 134555667777778999999999888777655
No 62
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.11 E-value=9.4 Score=38.34 Aligned_cols=152 Identities=18% Similarity=0.244 Sum_probs=90.2
Q ss_pred hhHHhhcCCcHHHHHHHHHHHHhCcccccccCCCCChhHHhhhhcCCCcc-EEEEeCCCCCChhHHHHHHHHhccc----
Q psy16637 5 LFIQALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVP-AVLCSVPGYDASGRVDDLAAELGKQ---- 79 (264)
Q Consensus 5 ll~r~lrpDr~~~a~~~~v~~~lg~~~~~~~~~~~~L~~~~~~~s~~~~P-ii~i~s~g~DP~~~i~~lA~~~~~~---- 79 (264)
-+.+-.||..+.. ++|-+.+. --|...+. +..--| +||.-++|+.-+.....+|+.....
T Consensus 5 ~la~KyRP~sf~d--------IiGQe~v~-----~~L~~ai~--~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~ 69 (624)
T PRK14959 5 SLTARYRPQTFAE--------VAGQETVK-----AILSRAAQ--ENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPT 69 (624)
T ss_pred hHHHHhCCCCHHH--------hcCCHHHH-----HHHHHHHH--cCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCC
Confidence 4567788887643 33543221 12444443 222224 5566788999898888888876421
Q ss_pred --------------------ceEEecCCCCCHHHHHHHHHHHH---Hc--CCeEEeccccch-hHHHHHHHHHhhccCCC
Q psy16637 80 --------------------IASIAIGSAEGFNQADNVINVAV---RS--GKWVLLKNVHLA-PQWLVQLEKKLHSLQPH 133 (264)
Q Consensus 80 --------------------~~~islG~~~~~~~a~~~l~~a~---~~--G~WllL~N~hL~-~~~l~~L~~~l~~~~~h 133 (264)
+..|.=....+.+.++.+++... .+ -..++|+++|.. ..-.+.|.+.+++ +.
T Consensus 70 ~~pCg~C~sC~~i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEE--P~ 147 (624)
T PRK14959 70 GEPCNTCEQCRKVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEE--PP 147 (624)
T ss_pred CCCCcccHHHHHHhcCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhc--cC
Confidence 22231111223455555433322 12 357788999887 4455666666653 45
Q ss_pred CCceEEEecCCCCCChHhHhhcceeeeecCC--ccHHHHHHH
Q psy16637 134 ANFRLFLTMEINPKVPVNLLRAGRIFVFEPP--PGIKANLLR 173 (264)
Q Consensus 134 ~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p--~~lk~~l~~ 173 (264)
++..+++++.....++..+..+|..+.+.++ ..++..+.+
T Consensus 148 ~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~ 189 (624)
T PRK14959 148 ARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTK 189 (624)
T ss_pred CCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHH
Confidence 6778888887767888899999998888764 334444443
No 63
>CHL00176 ftsH cell division protein; Validated
Probab=83.86 E-value=9.9 Score=38.33 Aligned_cols=113 Identities=16% Similarity=0.179 Sum_probs=73.9
Q ss_pred ccEEEEeCCCCCChhHHHHHHHHhcccceEEecCC------CCCHHHHHHHHHHHHHc-CCeEEeccccchh--------
Q psy16637 53 VPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGS------AEGFNQADNVINVAVRS-GKWVLLKNVHLAP-------- 117 (264)
Q Consensus 53 ~Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~------~~~~~~a~~~l~~a~~~-G~WllL~N~hL~~-------- 117 (264)
..+++.-+||..-|.....+|...+..+..++..+ +.+....+.++++|.+. ...|+|+++|...
T Consensus 217 ~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~ 296 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIG 296 (638)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCC
Confidence 36899999999999999999998887776665432 11223455667777653 4578899986431
Q ss_pred ----HHHHHHHHHhhcc---CCCCCceEEEecCCCCCChHhHhhcc---eeeeecCCc
Q psy16637 118 ----QWLVQLEKKLHSL---QPHANFRLFLTMEINPKVPVNLLRAG---RIFVFEPPP 165 (264)
Q Consensus 118 ----~~l~~L~~~l~~~---~~h~~FRL~lt~~~~~~~P~~lL~~s---~kv~~e~p~ 165 (264)
..-..|.++|..+ ....+..++.+++....++..+++.+ ..+.++.|.
T Consensus 297 ~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd 354 (638)
T CHL00176 297 GGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPD 354 (638)
T ss_pred CCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCC
Confidence 1222344444333 34566777777777667888888644 667776553
No 64
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=81.72 E-value=24 Score=31.75 Aligned_cols=119 Identities=15% Similarity=0.170 Sum_probs=71.5
Q ss_pred cEEEEeCCCCCChhHHHHHHHHhc-----ccceEEecCCC--C------------------------CHHHHHHHHHHHH
Q psy16637 54 PAVLCSVPGYDASGRVDDLAAELG-----KQIASIAIGSA--E------------------------GFNQADNVINVAV 102 (264)
Q Consensus 54 Pii~i~s~g~DP~~~i~~lA~~~~-----~~~~~islG~~--~------------------------~~~~a~~~l~~a~ 102 (264)
++++.-++|+.-|..+..+|+... ..+..++...- + .....+.+++...
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYA 117 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHH
Confidence 577778889999999999888763 12334443210 0 0011222222222
Q ss_pred ------HcCCeEEeccccchh-HHHHHHHHHhhccCCCCCceEEEecCCCCCChHhHhhcceeeeecCCcc--HHHHHHH
Q psy16637 103 ------RSGKWVLLKNVHLAP-QWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPPG--IKANLLR 173 (264)
Q Consensus 103 ------~~G~WllL~N~hL~~-~~l~~L~~~l~~~~~h~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p~~--lk~~l~~ 173 (264)
....-|+|+++|... .....|.++++. ..++.+++++++..+.++..+..+|..+.+.+|+. ++..+.+
T Consensus 118 ~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~--~~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~ 195 (337)
T PRK12402 118 SYRPLSADYKTILLDNAEALREDAQQALRRIMEQ--YSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLES 195 (337)
T ss_pred hcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHh--ccCCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHH
Confidence 223578999998763 445556666653 34567888887666667778888998888876543 3444444
Q ss_pred H
Q psy16637 174 T 174 (264)
Q Consensus 174 ~ 174 (264)
.
T Consensus 196 ~ 196 (337)
T PRK12402 196 I 196 (337)
T ss_pred H
Confidence 3
No 65
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=81.51 E-value=20 Score=30.88 Aligned_cols=93 Identities=17% Similarity=0.096 Sum_probs=60.9
Q ss_pred CChhHHHHHHHHhccc-ceEEecCCCCCHHHHHHHHHHHHH---cCCeEEeccccch-hHHHHHHHHHhhccCCCCCceE
Q psy16637 64 DASGRVDDLAAELGKQ-IASIAIGSAEGFNQADNVINVAVR---SGKWVLLKNVHLA-PQWLVQLEKKLHSLQPHANFRL 138 (264)
Q Consensus 64 DP~~~i~~lA~~~~~~-~~~islG~~~~~~~a~~~l~~a~~---~G~WllL~N~hL~-~~~l~~L~~~l~~~~~h~~FRL 138 (264)
|+-..+.++....+.+ ++.+. ...-+++.++.+++++.. +|.+ ++.++|.. ..-.+.|-+.|++ |.++--.
T Consensus 12 d~e~~~~~l~~~~~~~~~~~f~-~~~i~Vd~iReii~~~~~~~~~~k~-iI~~a~~l~~~A~NaLLK~LEE--Pp~~~~f 87 (206)
T PRK08485 12 DFEESKEELINEFGKKNLRFFI-KEEFKIEDAKEVIAEAYIAESEEKI-IVIAAPSYGIEAQNALLKILEE--PPKNICF 87 (206)
T ss_pred CHHHHHHHHHHhcCCCceEEEC-CCCCCHHHHHHHHHHHhhCCCCcEE-EEEchHhhCHHHHHHHHHHhcC--CCCCeEE
Confidence 7777788888777754 44442 223346778887776553 4554 56678766 4555667777764 4444455
Q ss_pred EEecCCCCCChHhHhhcceeee
Q psy16637 139 FLTMEINPKVPVNLLRAGRIFV 160 (264)
Q Consensus 139 ~lt~~~~~~~P~~lL~~s~kv~ 160 (264)
+|.+.....++..+..+|..+.
T Consensus 88 iL~t~~~~~llpTI~SRc~~~~ 109 (206)
T PRK08485 88 IIVAKSKNLLLPTIRSRLIIEK 109 (206)
T ss_pred EEEeCChHhCchHHHhhheecc
Confidence 6667666789999999998754
No 66
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.92 E-value=46 Score=30.67 Aligned_cols=118 Identities=19% Similarity=0.270 Sum_probs=73.8
Q ss_pred cEEEEeCCCCCChhHHHHHHHHhcc----------cceEEecC--CCCCHHHHHHHHHHHHH-----cCCeEEeccccch
Q psy16637 54 PAVLCSVPGYDASGRVDDLAAELGK----------QIASIAIG--SAEGFNQADNVINVAVR-----SGKWVLLKNVHLA 116 (264)
Q Consensus 54 Pii~i~s~g~DP~~~i~~lA~~~~~----------~~~~islG--~~~~~~~a~~~l~~a~~-----~G~WllL~N~hL~ 116 (264)
.++|.-++|..-+.....+|+.... .+..+-+. ...+.+.+..+++.+.. +..-|+++++|..
T Consensus 41 ~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l 120 (367)
T PRK14970 41 ALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHML 120 (367)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhc
Confidence 4777888899889888888887532 22222222 22223455566665432 2357888999765
Q ss_pred -hHHHHHHHHHhhccCCCCCceEEEecCCCCCChHhHhhcceeeeecCC--ccHHHHHHH
Q psy16637 117 -PQWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPP--PGIKANLLR 173 (264)
Q Consensus 117 -~~~l~~L~~~l~~~~~h~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p--~~lk~~l~~ 173 (264)
..-...|.+.++. +.++..++++++....++..+..+|..+.+.++ ..+...+.+
T Consensus 121 ~~~~~~~ll~~le~--~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~ 178 (367)
T PRK14970 121 SSAAFNAFLKTLEE--PPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAG 178 (367)
T ss_pred CHHHHHHHHHHHhC--CCCceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHHHHHH
Confidence 3333445444542 455667777776667788888999998888775 445555554
No 67
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=79.55 E-value=23 Score=28.99 Aligned_cols=74 Identities=15% Similarity=0.153 Sum_probs=41.6
Q ss_pred ccEEEEeCCCCCChhH-HHHHHHHhcccceEEecCCCCCHHHHHHHHHHHHHcCCeEEecc--ccchhHHHHHHHHHh
Q psy16637 53 VPAVLCSVPGYDASGR-VDDLAAELGKQIASIAIGSAEGFNQADNVINVAVRSGKWVLLKN--VHLAPQWLVQLEKKL 127 (264)
Q Consensus 53 ~Pii~i~s~g~DP~~~-i~~lA~~~~~~~~~islG~~~~~~~a~~~l~~a~~~G~WllL~N--~hL~~~~l~~L~~~l 127 (264)
.-+|++-....|.+.+ +++++++.+..+..+..+.+.+...+...- ....+|.||++=+ ..+.++|+..+.+.+
T Consensus 28 ~eiiVvddgS~d~t~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~n~g-~~~~~g~~v~~ld~Dd~~~~~~l~~~~~~~ 104 (214)
T cd04196 28 DELIISDDGSTDGTVEIIKEYIDKDPFIIILIRNGKNLGVARNFESL-LQAADGDYVFFCDQDDIWLPDKLERLLKAF 104 (214)
T ss_pred eEEEEEeCCCCCCcHHHHHHHHhcCCceEEEEeCCCCccHHHHHHHH-HHhCCCCEEEEECCCcccChhHHHHHHHHH
Confidence 3466665555677755 445555433334445554444432222111 2335799999944 566788988887764
No 68
>PRK08084 DNA replication initiation factor; Provisional
Probab=79.25 E-value=22 Score=30.81 Aligned_cols=119 Identities=16% Similarity=0.170 Sum_probs=73.7
Q ss_pred CccEEEEeCCCCCChhHHHHHHHHh---cccceEEecCCCCCHHHHHHHHHHHHHcCCeEEeccccch---hHHHHHHHH
Q psy16637 52 NVPAVLCSVPGYDASGRVDDLAAEL---GKQIASIAIGSAEGFNQADNVINVAVRSGKWVLLKNVHLA---PQWLVQLEK 125 (264)
Q Consensus 52 ~~Pii~i~s~g~DP~~~i~~lA~~~---~~~~~~islG~~~~~~~a~~~l~~a~~~G~WllL~N~hL~---~~~l~~L~~ 125 (264)
..++++.-++|+.-|-.+..+|... |.++..+++..... ...+ +.+..++=.+|+|+++|.. +.|-..|-.
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~--~~~~-~~~~~~~~dlliiDdi~~~~~~~~~~~~lf~ 121 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW--FVPE-VLEGMEQLSLVCIDNIECIAGDELWEMAIFD 121 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh--hhHH-HHHHhhhCCEEEEeChhhhcCCHHHHHHHHH
Confidence 3477888889999998888777653 44566666643221 1111 2223333479999999875 457666666
Q ss_pred HhhccCCCCCceEEEecCCCC-C---ChHhHhhcc---eeeeecCCc--cHHHHHHH
Q psy16637 126 KLHSLQPHANFRLFLTMEINP-K---VPVNLLRAG---RIFVFEPPP--GIKANLLR 173 (264)
Q Consensus 126 ~l~~~~~h~~FRL~lt~~~~~-~---~P~~lL~~s---~kv~~e~p~--~lk~~l~~ 173 (264)
.+.......+.++.+|++..+ . +...+..++ ..+..++|. ..+..+.+
T Consensus 122 l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~ 178 (235)
T PRK08084 122 LYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQL 178 (235)
T ss_pred HHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHH
Confidence 655432233457888886543 2 445777777 788888773 44555544
No 69
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=79.03 E-value=21 Score=30.08 Aligned_cols=76 Identities=13% Similarity=0.265 Sum_probs=44.7
Q ss_pred ccEEEEeCCCCCChh--HHHHHHHHhcccceEEecCCCCCH--HHHHHHHHHHHHcCCeEEeccc--cchhHHHHHHHHH
Q psy16637 53 VPAVLCSVPGYDASG--RVDDLAAELGKQIASIAIGSAEGF--NQADNVINVAVRSGKWVLLKNV--HLAPQWLVQLEKK 126 (264)
Q Consensus 53 ~Pii~i~s~g~DP~~--~i~~lA~~~~~~~~~islG~~~~~--~~a~~~l~~a~~~G~WllL~N~--hL~~~~l~~L~~~ 126 (264)
.-++++-....|++. .+.+++++.+.++..+......+. ......++.|..+|.||++=|+ .+.+.|+.++...
T Consensus 29 ~eiiVvdd~s~D~t~~~~i~~~~~~~~~~i~~i~~~~~~G~~~~a~n~g~~~a~~~~d~i~~lD~D~~~~~~~l~~l~~~ 108 (236)
T cd06435 29 FEVIVIDNNTKDEALWKPVEAHCAQLGERFRFFHVEPLPGAKAGALNYALERTAPDAEIIAVIDADYQVEPDWLKRLVPI 108 (236)
T ss_pred cEEEEEeCCCCchhHHHHHHHHHHHhCCcEEEEEcCCCCCCchHHHHHHHHhcCCCCCEEEEEcCCCCcCHHHHHHHHHH
Confidence 345555545567763 566777665555555544422221 1223345555445899999664 5568899988776
Q ss_pred hh
Q psy16637 127 LH 128 (264)
Q Consensus 127 l~ 128 (264)
++
T Consensus 109 ~~ 110 (236)
T cd06435 109 FD 110 (236)
T ss_pred hc
Confidence 64
No 70
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.85 E-value=40 Score=32.80 Aligned_cols=154 Identities=21% Similarity=0.285 Sum_probs=87.0
Q ss_pred hHHhhcCCcHHHHHHHHHHHHhCcccccccCCCCChhHHhhhhcCCCccEEEEeCCCCCChhHHHHHHHHhcc-------
Q psy16637 6 FIQALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVPAVLCSVPGYDASGRVDDLAAELGK------- 78 (264)
Q Consensus 6 l~r~lrpDr~~~a~~~~v~~~lg~~~~~~~~~~~~L~~~~~~~s~~~~Pii~i~s~g~DP~~~i~~lA~~~~~------- 78 (264)
+.+-.||..+.. ..|.+.+. -.|.+.+. ........+|.-++|..-|.....+|+..+.
T Consensus 6 ~~~kyRP~~f~d--------iiGq~~i~-----~~L~~~i~-~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~ 71 (486)
T PRK14953 6 FARKYRPKFFKE--------VIGQEIVV-----RILKNAVK-LQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGE 71 (486)
T ss_pred HHHhhCCCcHHH--------ccChHHHH-----HHHHHHHH-cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCC
Confidence 556678876643 33433221 13344443 1111223567788888888777777776531
Q ss_pred -----------------cceEEecCCCCCHHHHHHHHHHHHHc---C--CeEEeccccchh-HHHHHHHHHhhccCCCCC
Q psy16637 79 -----------------QIASIAIGSAEGFNQADNVINVAVRS---G--KWVLLKNVHLAP-QWLVQLEKKLHSLQPHAN 135 (264)
Q Consensus 79 -----------------~~~~islG~~~~~~~a~~~l~~a~~~---G--~WllL~N~hL~~-~~l~~L~~~l~~~~~h~~ 135 (264)
.+..+.-++..+.+.++.+.+.+... | .-++++++|... .-.+.|.+.++ +++++
T Consensus 72 pc~~c~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LE--epp~~ 149 (486)
T PRK14953 72 PCGKCENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLE--EPPPR 149 (486)
T ss_pred CCCccHHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHh--cCCCC
Confidence 11122222223444455554444322 2 366789999773 44456666665 34556
Q ss_pred ceEEEecCCCCCChHhHhhcceeeeecCC--ccHHHHHHHHh
Q psy16637 136 FRLFLTMEINPKVPVNLLRAGRIFVFEPP--PGIKANLLRTF 175 (264)
Q Consensus 136 FRL~lt~~~~~~~P~~lL~~s~kv~~e~p--~~lk~~l~~~~ 175 (264)
..+++++.....+|..+..+|..+.+.++ ..++..+.+..
T Consensus 150 ~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~ 191 (486)
T PRK14953 150 TIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRIC 191 (486)
T ss_pred eEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHH
Confidence 67777665556788899999999998765 33444555433
No 71
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.72 E-value=19 Score=33.84 Aligned_cols=153 Identities=12% Similarity=0.183 Sum_probs=90.9
Q ss_pred hhHHhhcCCcHHHHHHHHHHHHhCcccccccCCCCChhHHhhhhcCCCcc--EEEEeCCCCCChhHHHHHHHHhcc----
Q psy16637 5 LFIQALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVP--AVLCSVPGYDASGRVDDLAAELGK---- 78 (264)
Q Consensus 5 ll~r~lrpDr~~~a~~~~v~~~lg~~~~~~~~~~~~L~~~~~~~s~~~~P--ii~i~s~g~DP~~~i~~lA~~~~~---- 78 (264)
.|.+-+||..+. +++|-+.+. --|...+. ..+.| +||.-++|+.-+.....+|+....
T Consensus 5 ~l~~k~RP~~~~--------eiiGq~~~~-----~~L~~~~~---~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~ 68 (397)
T PRK14955 5 VIARKYRPKKFA--------DITAQEHIT-----RTIQNSLR---MGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMI 68 (397)
T ss_pred HHHHhcCCCcHh--------hccChHHHH-----HHHHHHHH---hCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCc
Confidence 466778888764 344543322 12445553 22344 778888899989888888887632
Q ss_pred ----------------------------cceEEecCCCCCHHHHHHHHHHHHH-----cCCeEEeccccchh-HHHHHHH
Q psy16637 79 ----------------------------QIASIAIGSAEGFNQADNVINVAVR-----SGKWVLLKNVHLAP-QWLVQLE 124 (264)
Q Consensus 79 ----------------------------~~~~islG~~~~~~~a~~~l~~a~~-----~G~WllL~N~hL~~-~~l~~L~ 124 (264)
++..+.-+...+.+.++.+++.+.. +..-++++++|... .-.+.|.
T Consensus 69 ~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LL 148 (397)
T PRK14955 69 DDADYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFL 148 (397)
T ss_pred CcccccccCCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHH
Confidence 1122211122234556655555522 23457789998764 3445566
Q ss_pred HHhhccCCCCCceEEEecCCCCCChHhHhhcceeeeecCC--ccHHHHHHHHh
Q psy16637 125 KKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPP--PGIKANLLRTF 175 (264)
Q Consensus 125 ~~l~~~~~h~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p--~~lk~~l~~~~ 175 (264)
+.++ ++.+...++++++....++..+..+|..+.+.++ ..++..+.+.+
T Consensus 149 k~LE--ep~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~ 199 (397)
T PRK14955 149 KTLE--EPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGIC 199 (397)
T ss_pred HHHh--cCCCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 6665 4556778877776556788788888988888753 34444444433
No 72
>KOG3079|consensus
Probab=77.83 E-value=17 Score=30.88 Aligned_cols=54 Identities=13% Similarity=0.364 Sum_probs=35.7
Q ss_pred CccEEEEe-CCCCCChhHHHHHHHHhcccceEEecCCCC--CH----HHHHHHHHHHHHcCCe
Q psy16637 52 NVPAVLCS-VPGYDASGRVDDLAAELGKQIASIAIGSAE--GF----NQADNVINVAVRSGKW 107 (264)
Q Consensus 52 ~~Pii~i~-s~g~DP~~~i~~lA~~~~~~~~~islG~~~--~~----~~a~~~l~~a~~~G~W 107 (264)
..||||++ .||+.--..=.+++++.+ ++++|.|.-= +. +.--.+|+.++++|.-
T Consensus 7 ~~~IifVlGGPGsgKgTqC~kiv~ky~--ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~G~i 67 (195)
T KOG3079|consen 7 KPPIIFVLGGPGSGKGTQCEKIVEKYG--FTHLSAGDLLRAEIASAGSERGALIKEIIKNGDL 67 (195)
T ss_pred CCCEEEEEcCCCCCcchHHHHHHHHcC--ceeecHHHHHHHHHccccChHHHHHHHHHHcCCc
Confidence 45777765 668888888888888887 8899998630 00 1112456777777743
No 73
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=77.54 E-value=44 Score=32.16 Aligned_cols=151 Identities=16% Similarity=0.239 Sum_probs=88.8
Q ss_pred hHHhhcCCcHHHHHHHHHHHHhCcccccccCCCCChhHHhhhhcCCCcc--EEEEeCCCCCChhHHHHHHHHhccc----
Q psy16637 6 FIQALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVP--AVLCSVPGYDASGRVDDLAAELGKQ---- 79 (264)
Q Consensus 6 l~r~lrpDr~~~a~~~~v~~~lg~~~~~~~~~~~~L~~~~~~~s~~~~P--ii~i~s~g~DP~~~i~~lA~~~~~~---- 79 (264)
+.+-+||..+. ++.|-+.+. -.|.+.+. ..+.| +||.-++|..-+.....+|+.....
T Consensus 7 ~~~kyRP~~~~--------diiGq~~~v-----~~L~~~i~---~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~ 70 (451)
T PRK06305 7 SSRKYRPQTFS--------EILGQDAVV-----AVLKNALR---FNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTE 70 (451)
T ss_pred HHHHhCCCCHH--------HhcCcHHHH-----HHHHHHHH---cCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCccc
Confidence 45567776553 444544322 13444453 12333 6777888998888888888875210
Q ss_pred -------------------ceEEec-CC-CCCHHHHHHHHHHHH-----HcCCeEEeccccch-hHHHHHHHHHhhccCC
Q psy16637 80 -------------------IASIAI-GS-AEGFNQADNVINVAV-----RSGKWVLLKNVHLA-PQWLVQLEKKLHSLQP 132 (264)
Q Consensus 80 -------------------~~~isl-G~-~~~~~~a~~~l~~a~-----~~G~WllL~N~hL~-~~~l~~L~~~l~~~~~ 132 (264)
...+-+ |. ..+.+.++.+.+... .+...|+++++|.. ..-.+.|.+.++. +
T Consensus 71 ~~~~c~~c~~C~~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEe--p 148 (451)
T PRK06305 71 DQEPCNQCASCKEISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEE--P 148 (451)
T ss_pred CCCCCcccHHHHHHhcCCCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhc--C
Confidence 111112 21 123344544433322 33467888999866 3345566666664 4
Q ss_pred CCCceEEEecCCCCCChHhHhhcceeeeecCC--ccHHHHHHHH
Q psy16637 133 HANFRLFLTMEINPKVPVNLLRAGRIFVFEPP--PGIKANLLRT 174 (264)
Q Consensus 133 h~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p--~~lk~~l~~~ 174 (264)
.++-.++++++....+...+..+|..+.+.++ ..+...+.+.
T Consensus 149 ~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~ 192 (451)
T PRK06305 149 PQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALI 192 (451)
T ss_pred CCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHH
Confidence 55668888776666788899999999999865 3345455544
No 74
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=76.49 E-value=27 Score=28.86 Aligned_cols=73 Identities=15% Similarity=0.327 Sum_probs=40.0
Q ss_pred EEEEeCCCCCChhHHHHHH-HHhcccceEEecCCCCCHHHHHHHHHHHHH--cCCeEEec--cccchhHHHHHHHHHhh
Q psy16637 55 AVLCSVPGYDASGRVDDLA-AELGKQIASIAIGSAEGFNQADNVINVAVR--SGKWVLLK--NVHLAPQWLVQLEKKLH 128 (264)
Q Consensus 55 ii~i~s~g~DP~~~i~~lA-~~~~~~~~~islG~~~~~~~a~~~l~~a~~--~G~WllL~--N~hL~~~~l~~L~~~l~ 128 (264)
|+++-....|.+..+.+++ +..+..+..+....+... -....++.+++ +|.||++= ++.+.+.|+..+.+.+.
T Consensus 31 iivvdd~s~d~t~~~~~~~~~~~~~~v~~~~~~~~~~~-g~~~a~n~g~~~~~~d~i~~~D~D~~~~~~~l~~l~~~~~ 108 (229)
T cd04192 31 VILVDDHSTDGTVQILEFAAAKPNFQLKILNNSRVSIS-GKKNALTTAIKAAKGDWIVTTDADCVVPSNWLLTFVAFIQ 108 (229)
T ss_pred EEEEcCCCCcChHHHHHHHHhCCCcceEEeeccCcccc-hhHHHHHHHHHHhcCCEEEEECCCcccCHHHHHHHHHHhh
Confidence 4455444456676666522 222345555554421111 11223444433 69999995 46777889988876553
No 75
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=75.42 E-value=33 Score=33.29 Aligned_cols=112 Identities=17% Similarity=0.226 Sum_probs=72.8
Q ss_pred cEEEEeCCCCCChhHHHHHHHHhcccceEEecCC------CCCHHHHHHHHHHHHHc-CCeEEeccccchh---------
Q psy16637 54 PAVLCSVPGYDASGRVDDLAAELGKQIASIAIGS------AEGFNQADNVINVAVRS-GKWVLLKNVHLAP--------- 117 (264)
Q Consensus 54 Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~------~~~~~~a~~~l~~a~~~-G~WllL~N~hL~~--------- 117 (264)
-+++.-+||+.-|..+..+|...+..+..++... +.+.+..++.++.|... +.-|++++++...
T Consensus 90 giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~ 169 (495)
T TIGR01241 90 GVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGG 169 (495)
T ss_pred cEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCC
Confidence 4889999999999999999999887766665321 22334567778887654 4788889985531
Q ss_pred ---HHHHHHHHHhhcc---CCCCCceEEEecCCCCCChHhHhhcc---eeeeecCCc
Q psy16637 118 ---QWLVQLEKKLHSL---QPHANFRLFLTMEINPKVPVNLLRAG---RIFVFEPPP 165 (264)
Q Consensus 118 ---~~l~~L~~~l~~~---~~h~~FRL~lt~~~~~~~P~~lL~~s---~kv~~e~p~ 165 (264)
.+...+.+++..+ ....+..++.+++....+...+++.+ .++.+..|+
T Consensus 170 ~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd 226 (495)
T TIGR01241 170 GNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPD 226 (495)
T ss_pred ccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCC
Confidence 1223334444333 34456667777777778888888632 345555443
No 76
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=75.03 E-value=30 Score=32.04 Aligned_cols=112 Identities=16% Similarity=0.232 Sum_probs=69.2
Q ss_pred cEEEEeCCCCCChhHHHHHHHHhcccceEEecCC------CCCHHHHHHHHHHHHHc-CCeEEeccccchh---------
Q psy16637 54 PAVLCSVPGYDASGRVDDLAAELGKQIASIAIGS------AEGFNQADNVINVAVRS-GKWVLLKNVHLAP--------- 117 (264)
Q Consensus 54 Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~------~~~~~~a~~~l~~a~~~-G~WllL~N~hL~~--------- 117 (264)
-+++.-+||+.-|..+..+|...+..+..++-++ +++.......++.|... ..-|+|++++...
T Consensus 158 gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~ 237 (364)
T TIGR01242 158 GVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTS 237 (364)
T ss_pred eEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCC
Confidence 3888899999999999999998876655554221 11112334445555443 4578889876431
Q ss_pred ---HHHHHHHHHhhc---cCCCCCceEEEecCCCCCChHhHhhc---ceeeeecCCc
Q psy16637 118 ---QWLVQLEKKLHS---LQPHANFRLFLTMEINPKVPVNLLRA---GRIFVFEPPP 165 (264)
Q Consensus 118 ---~~l~~L~~~l~~---~~~h~~FRL~lt~~~~~~~P~~lL~~---s~kv~~e~p~ 165 (264)
..-..+.+.+.. .....+.++++|++....++..+++. ..++.+..|.
T Consensus 238 ~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~ 294 (364)
T TIGR01242 238 GDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPD 294 (364)
T ss_pred ccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcC
Confidence 112233344433 23356788999998878899888852 3455555443
No 77
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=74.86 E-value=15 Score=33.68 Aligned_cols=73 Identities=15% Similarity=0.214 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHH---cC--CeEEeccccch-hHHHHHHHHHhhccCCCCCceEEEecCCCCCChHhHhhcceeeeecCC
Q psy16637 91 FNQADNVINVAVR---SG--KWVLLKNVHLA-PQWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPP 164 (264)
Q Consensus 91 ~~~a~~~l~~a~~---~G--~WllL~N~hL~-~~~l~~L~~~l~~~~~h~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p 164 (264)
++.++.+.+.+.. .| ..++++++|.. .+--+.|-|.||+ |.++=.++|+++....++.-+..+|.++.+.+|
T Consensus 90 vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~ 167 (319)
T PRK06090 90 VEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEE--PAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPP 167 (319)
T ss_pred HHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHhcceeEeCCCC
Confidence 4566665555432 23 45777999877 4555667777764 555667777787777888899999999999876
Q ss_pred c
Q psy16637 165 P 165 (264)
Q Consensus 165 ~ 165 (264)
+
T Consensus 168 ~ 168 (319)
T PRK06090 168 S 168 (319)
T ss_pred C
Confidence 4
No 78
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=74.79 E-value=53 Score=33.08 Aligned_cols=144 Identities=11% Similarity=0.191 Sum_probs=86.6
Q ss_pred hhhHHhhcCCcHHHHHHHHHHHHhCcccccccCCCCChhHHhhhhcCCCc--cEEEEeCCCCCChhHHHHHHHHhcc---
Q psy16637 4 LLFIQALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNV--PAVLCSVPGYDASGRVDDLAAELGK--- 78 (264)
Q Consensus 4 lll~r~lrpDr~~~a~~~~v~~~lg~~~~~~~~~~~~L~~~~~~~s~~~~--Pii~i~s~g~DP~~~i~~lA~~~~~--- 78 (264)
..+.+-+||..+... .|-+.+. -.|...+. + .+. -+||.-++|+.-+.....+|+....
T Consensus 4 ~~l~~kyRP~~f~ei--------vGQe~i~-----~~L~~~i~--~-~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~ 67 (620)
T PRK14954 4 QVIARKYRPSKFADI--------TAQEHIT-----HTIQNSLR--M-DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRM 67 (620)
T ss_pred HHHHHHHCCCCHHHh--------cCcHHHH-----HHHHHHHH--c-CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCc
Confidence 346777889876443 3433222 02444453 1 233 3778888899888888888877632
Q ss_pred -----------------------------cceEEecCCCCCHHHHHHHHHHHH-----HcCCeEEeccccchh-HHHHHH
Q psy16637 79 -----------------------------QIASIAIGSAEGFNQADNVINVAV-----RSGKWVLLKNVHLAP-QWLVQL 123 (264)
Q Consensus 79 -----------------------------~~~~islG~~~~~~~a~~~l~~a~-----~~G~WllL~N~hL~~-~~l~~L 123 (264)
++..+.-++..+.+.++.+++... .+-.-++++++|... .-.+.|
T Consensus 68 ~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naL 147 (620)
T PRK14954 68 IDDPVYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAF 147 (620)
T ss_pred CCccccccccCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHH
Confidence 112222112223455666655552 223467789998763 344566
Q ss_pred HHHhhccCCCCCceEEEecCCCCCChHhHhhcceeeeecCCc
Q psy16637 124 EKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPP 165 (264)
Q Consensus 124 ~~~l~~~~~h~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p~ 165 (264)
.+++++ +.+...++++++....++..+..+|..+.+.+++
T Consensus 148 LK~LEe--Pp~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~ 187 (620)
T PRK14954 148 LKTLEE--PPPHAIFIFATTELHKIPATIASRCQRFNFKRIP 187 (620)
T ss_pred HHHHhC--CCCCeEEEEEeCChhhhhHHHHhhceEEecCCCC
Confidence 666653 3345566666655568888899999999997653
No 79
>KOG0991|consensus
Probab=74.58 E-value=49 Score=29.58 Aligned_cols=180 Identities=17% Similarity=0.262 Sum_probs=108.3
Q ss_pred CChhHHhhhhcCCCcc-EEEEeCCCCCChhHHHHHHHHh-ccc----ceEEecCCCCCHHHHHHHHHHHHHc------C-
Q psy16637 39 LDLPHIVEHELRGNVP-AVLCSVPGYDASGRVDDLAAEL-GKQ----IASIAIGSAEGFNQADNVINVAVRS------G- 105 (264)
Q Consensus 39 ~~L~~~~~~~s~~~~P-ii~i~s~g~DP~~~i~~lA~~~-~~~----~~~islG~~~~~~~a~~~l~~a~~~------G- 105 (264)
.+.-+.+. -..+.| +|+--+||..-|..+.-||... |.+ +..+.-....+++.++..|+.-+++ |
T Consensus 36 v~rl~via--~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~IK~FAQ~kv~lp~gr 113 (333)
T KOG0991|consen 36 VERLSVIA--KEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKIKMFAQKKVTLPPGR 113 (333)
T ss_pred HHHHHHHH--HcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHHHHHHHhhccCCCCc
Confidence 33334443 245678 4555677999999999999875 533 3445555556777888777765543 3
Q ss_pred -CeEEeccccchhH----HHHHHHHHhhccCCCCCceEEEecCCCCCChHhHhhcceeeeecCCccHHHHHHHHhcCCCh
Q psy16637 106 -KWVLLKNVHLAPQ----WLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPPGIKANLLRTFSTVPA 180 (264)
Q Consensus 106 -~WllL~N~hL~~~----~l~~L~~~l~~~~~h~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p~~lk~~l~~~~~~~~~ 180 (264)
.-|+|+.+.-+.. -|.+-.++. ++.-|.-+.|+.+.++-.++=.+|..+.|.. +++
T Consensus 114 hKIiILDEADSMT~gAQQAlRRtMEiy-----S~ttRFalaCN~s~KIiEPIQSRCAiLRysk--------------lsd 174 (333)
T KOG0991|consen 114 HKIIILDEADSMTAGAQQALRRTMEIY-----SNTTRFALACNQSEKIIEPIQSRCAILRYSK--------------LSD 174 (333)
T ss_pred eeEEEeeccchhhhHHHHHHHHHHHHH-----cccchhhhhhcchhhhhhhHHhhhHhhhhcc--------------cCH
Confidence 4577788776643 233322222 2333667778888888777777777766652 222
Q ss_pred hhhccChhHHHHHHHHHHHHHHHHhhhhhccccCCccccccCHHHHHHHHHHHHHHHhhh-cCCCCCCCCcc
Q psy16637 181 TRMMKAPNERARLYFLLAWFHAIVQERLRYVPLGWSKFYEFNESDLRVACDTLDTWIDST-AMGKRDYAMYH 251 (264)
Q Consensus 181 ~~~~~~~~~~~~l~~~L~~~Hail~eR~~y~p~Gws~~Y~f~~~Dl~~~~~~l~~~~~~~-~~~~~~~~~~~ 251 (264)
.+ ..+|+ .-.+-.|+-+|..-|..--..-.+.|...+++.+|..++.. -.+..|++.+|
T Consensus 175 ~q------iL~Rl------~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnLQst~~g~g~Vn~enVfKv~ 234 (333)
T KOG0991|consen 175 QQ------ILKRL------LEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNLQSTVNGFGLVNQENVFKVC 234 (333)
T ss_pred HH------HHHHH------HHHHHHhCCCCCcchHHHhhhhccchHHHHHHHHHHHhccccccchhhhhhcc
Confidence 11 12232 22233466667776666555566778888888888777664 34445555544
No 80
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=74.14 E-value=16 Score=33.60 Aligned_cols=74 Identities=16% Similarity=0.287 Sum_probs=53.3
Q ss_pred CHHHHHHHHHHHH---HcCCe--EEeccccch-hHHHHHHHHHhhccCCCCCceEEEecCCCCCChHhHhhcceeeeecC
Q psy16637 90 GFNQADNVINVAV---RSGKW--VLLKNVHLA-PQWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEP 163 (264)
Q Consensus 90 ~~~~a~~~l~~a~---~~G~W--llL~N~hL~-~~~l~~L~~~l~~~~~h~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~ 163 (264)
+++.++.+++.+. ..|+| ++++++|.. ..--+.|-+.||+ |.++-.++|+++....++.-+..+|..+.+.+
T Consensus 88 ~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEE--Pp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~ 165 (325)
T PRK06871 88 GVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEE--PRPNTYFLLQADLSAALLPTIYSRCQTWLIHP 165 (325)
T ss_pred CHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcC--CCCCeEEEEEECChHhCchHHHhhceEEeCCC
Confidence 4566776655544 33544 668999877 4555677777764 55566777788777889999999999999987
Q ss_pred Cc
Q psy16637 164 PP 165 (264)
Q Consensus 164 p~ 165 (264)
|+
T Consensus 166 ~~ 167 (325)
T PRK06871 166 PE 167 (325)
T ss_pred CC
Confidence 63
No 81
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=73.48 E-value=15 Score=33.85 Aligned_cols=74 Identities=18% Similarity=0.267 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHc---C--CeEEeccccch-hHHHHHHHHHhhccCCCCCceEEEecCCCCCChHhHhhcceeeeecCC
Q psy16637 91 FNQADNVINVAVRS---G--KWVLLKNVHLA-PQWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPP 164 (264)
Q Consensus 91 ~~~a~~~l~~a~~~---G--~WllL~N~hL~-~~~l~~L~~~l~~~~~h~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p 164 (264)
++.++.+.+.+... | ..+++++++-. .+-.+.|-+.|| ++.++-.++|+++....++..|..+|..+.+.+|
T Consensus 95 idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLE--EPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~ 172 (319)
T PRK08769 95 IEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLE--EPSPGRYLWLISAQPARLPATIRSRCQRLEFKLP 172 (319)
T ss_pred HHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhh--CCCCCCeEEEEECChhhCchHHHhhheEeeCCCc
Confidence 34555555544432 2 57788999766 455667777776 4556778888998888899999999999999866
Q ss_pred cc
Q psy16637 165 PG 166 (264)
Q Consensus 165 ~~ 166 (264)
+.
T Consensus 173 ~~ 174 (319)
T PRK08769 173 PA 174 (319)
T ss_pred CH
Confidence 43
No 82
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=73.21 E-value=25 Score=36.38 Aligned_cols=111 Identities=14% Similarity=0.196 Sum_probs=70.0
Q ss_pred cEEEEeCCCCCChhHHHHHHHHhcccceEEecCCCCCHHHHH-----------HHHHHHHH----cCCeEEeccccchhH
Q psy16637 54 PAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAEGFNQAD-----------NVINVAVR----SGKWVLLKNVHLAPQ 118 (264)
Q Consensus 54 Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~~~~~~~a~-----------~~l~~a~~----~G~WllL~N~hL~~~ 118 (264)
+++++-+||+.-|.....+|+..+.++..+++|...+..... ..+.++++ .+.-++|+.+|-...
T Consensus 351 ~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~~~~villDEidk~~~ 430 (784)
T PRK10787 351 ILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSS 430 (784)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcCCCCCEEEEEChhhccc
Confidence 466778889999999999999888888889988754321111 11233333 334678888765532
Q ss_pred -H----HHHHHHHhhcc-----CC--------CCCceEEEecCCCCCChHhHhhcceeeeecCCc
Q psy16637 119 -W----LVQLEKKLHSL-----QP--------HANFRLFLTMEINPKVPVNLLRAGRIFVFEPPP 165 (264)
Q Consensus 119 -~----l~~L~~~l~~~-----~~--------h~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p~ 165 (264)
. .+.|-+.++.- .- -++. +|+.+.+.-.+|..++.++..+.+.+.+
T Consensus 431 ~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v-~~i~TaN~~~i~~aLl~R~~ii~~~~~t 494 (784)
T PRK10787 431 DMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDV-MFVATSNSMNIPAPLLDRMEVIRLSGYT 494 (784)
T ss_pred ccCCCHHHHHHHHhccccEEEEecccccccccCCce-EEEEcCCCCCCCHHHhcceeeeecCCCC
Confidence 1 34454444321 00 1344 5555444457999999999988887654
No 83
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=72.49 E-value=66 Score=28.15 Aligned_cols=120 Identities=13% Similarity=0.128 Sum_probs=69.6
Q ss_pred CccEEEEeCCCCCChhHHHHHHHHh---c----ccceEEe--------cCCCCCHHHHHHHHHHHHHcCCeEEeccccch
Q psy16637 52 NVPAVLCSVPGYDASGRVDDLAAEL---G----KQIASIA--------IGSAEGFNQADNVINVAVRSGKWVLLKNVHLA 116 (264)
Q Consensus 52 ~~Pii~i~s~g~DP~~~i~~lA~~~---~----~~~~~is--------lG~~~~~~~a~~~l~~a~~~G~WllL~N~hL~ 116 (264)
..+++|.-+||+.-|.....+|+.. + ..+..++ +|+. ...+.+.++.| .|+=|+|+++|.-
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~~~~~g~~--~~~~~~~~~~a--~~~VL~IDE~~~L 117 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLVGEYIGHT--AQKTREVIKKA--LGGVLFIDEAYSL 117 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhhhhhccch--HHHHHHHHHhc--cCCEEEEechhhh
Confidence 3468899999999999888888753 2 1222221 1221 13445666665 4778999999963
Q ss_pred h-----HHH-HHHHHHhhccC-CCCCceEEEecCCCC-----CChHhHhhcc-eeeeecCC--ccHHHHHHHHh
Q psy16637 117 P-----QWL-VQLEKKLHSLQ-PHANFRLFLTMEINP-----KVPVNLLRAG-RIFVFEPP--PGIKANLLRTF 175 (264)
Q Consensus 117 ~-----~~l-~~L~~~l~~~~-~h~~FRL~lt~~~~~-----~~P~~lL~~s-~kv~~e~p--~~lk~~l~~~~ 175 (264)
. .+- +.+..++..+. .+.++++.++..+.. .++..+..++ ..+.+.++ ..+...+.+..
T Consensus 118 ~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~ 191 (261)
T TIGR02881 118 ARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMV 191 (261)
T ss_pred ccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHH
Confidence 2 111 23333443332 357788888765532 3566777776 56666643 33444444443
No 84
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=72.35 E-value=65 Score=32.09 Aligned_cols=150 Identities=19% Similarity=0.279 Sum_probs=86.8
Q ss_pred hHHhhcCCcHHHHHHHHHHHHhCcccccccCCCCChhHHhhhhcCCCcc--EEEEeCCCCCChhHHHHHHHHhccc----
Q psy16637 6 FIQALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVP--AVLCSVPGYDASGRVDDLAAELGKQ---- 79 (264)
Q Consensus 6 l~r~lrpDr~~~a~~~~v~~~lg~~~~~~~~~~~~L~~~~~~~s~~~~P--ii~i~s~g~DP~~~i~~lA~~~~~~---- 79 (264)
+.+-+||..+. ++.|.+-+. -.|...+. ..+.| +||.-++|..-+.....+|+..+..
T Consensus 6 l~~kyRP~~~~--------eiiGq~~~~-----~~L~~~i~---~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~ 69 (585)
T PRK14950 6 LYRKWRSQTFA--------ELVGQEHVV-----QTLRNAIA---EGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP 69 (585)
T ss_pred HHHHhCCCCHH--------HhcCCHHHH-----HHHHHHHH---hCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC
Confidence 45667887663 444543322 12444443 22333 6788899999999999888875310
Q ss_pred -------------------ceEEecC--CCCCHHHHHHHHHHHHH-----cCCeEEeccccchh-HHHHHHHHHhhccCC
Q psy16637 80 -------------------IASIAIG--SAEGFNQADNVINVAVR-----SGKWVLLKNVHLAP-QWLVQLEKKLHSLQP 132 (264)
Q Consensus 80 -------------------~~~islG--~~~~~~~a~~~l~~a~~-----~G~WllL~N~hL~~-~~l~~L~~~l~~~~~ 132 (264)
...+-+. ...+.+.++.+++.+.. +..-|+++++|... .-.+.|.+.+++ +
T Consensus 70 ~~~~c~~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEe--p 147 (585)
T PRK14950 70 KGRPCGTCEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEE--P 147 (585)
T ss_pred CCCCCccCHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhc--C
Confidence 1111121 12233455555554332 23567889998763 445566666653 3
Q ss_pred CCCceEEEecCCCCCChHhHhhcceeeeecCC--ccHHHHHHH
Q psy16637 133 HANFRLFLTMEINPKVPVNLLRAGRIFVFEPP--PGIKANLLR 173 (264)
Q Consensus 133 h~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p--~~lk~~l~~ 173 (264)
.++..++++++....++..+..+|..+.++.+ ..+...+.+
T Consensus 148 p~~tv~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~ 190 (585)
T PRK14950 148 PPHAIFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRK 190 (585)
T ss_pred CCCeEEEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHH
Confidence 35566667666556777788999999998754 234444443
No 85
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=71.04 E-value=56 Score=31.87 Aligned_cols=97 Identities=10% Similarity=0.144 Sum_probs=58.4
Q ss_pred hcCCCccEEEEeCCCCCChhHHHHHHHH---hcccceEEecCCCCCHHHHHHHH-----------------HHHHHcCCe
Q psy16637 48 ELRGNVPAVLCSVPGYDASGRVDDLAAE---LGKQIASIAIGSAEGFNQADNVI-----------------NVAVRSGKW 107 (264)
Q Consensus 48 ~s~~~~Pii~i~s~g~DP~~~i~~lA~~---~~~~~~~islG~~~~~~~a~~~l-----------------~~a~~~G~W 107 (264)
-.....|+++.-.+|+.-+.....+... .+..+..|.-+.-.+ +.++..+ .-...+|+.
T Consensus 206 ~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~-~~~e~~lfG~~~g~~~ga~~~~~g~~~~a~gGt 284 (509)
T PRK05022 206 VAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPE-SLAESELFGHVKGAFTGAISNRSGKFELADGGT 284 (509)
T ss_pred HhCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCCh-HHHHHHhcCccccccCCCcccCCcchhhcCCCE
Confidence 3455679999999998876654444433 334566665544322 2222211 012457899
Q ss_pred EEeccccchhH-HHHHHHHHhhccC---------CCCCceEEEecCCC
Q psy16637 108 VLLKNVHLAPQ-WLVQLEKKLHSLQ---------PHANFRLFLTMEIN 145 (264)
Q Consensus 108 llL~N~hL~~~-~l~~L~~~l~~~~---------~h~~FRL~lt~~~~ 145 (264)
|+|++++..+. .-..|-+.+++-. ...++|++.+++..
T Consensus 285 L~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 332 (509)
T PRK05022 285 LFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRD 332 (509)
T ss_pred EEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCC
Confidence 99999977654 3446666665422 23588999888654
No 86
>KOG1808|consensus
Probab=69.66 E-value=2.3 Score=47.30 Aligned_cols=70 Identities=29% Similarity=0.353 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHcCCeEEeccccch-hHHHHHHHHHhhc------------------cCCCCCceEEEecCCCCC-ChHh
Q psy16637 92 NQADNVINVAVRSGKWVLLKNVHLA-PQWLVQLEKKLHS------------------LQPHANFRLFLTMEINPK-VPVN 151 (264)
Q Consensus 92 ~~a~~~l~~a~~~G~WllL~N~hL~-~~~l~~L~~~l~~------------------~~~h~~FRL~lt~~~~~~-~P~~ 151 (264)
++.+..+..|.+.|+|..+++..++ +..++.++..++. ..+|+|||.+++.+++.. +-..
T Consensus 1461 ew~d~~~~~~~~~~~w~~l~~~~l~s~~~l~r~~~~lE~~~~~~~~e~~~~~~~d~~~~~~~n~r~~~~ve~~~~e~~~~ 1540 (1856)
T KOG1808|consen 1461 EWLDGQLVEAAEIGDWDLLDVVNLCSGAVLDRLNSRLEVLGKLLVAEKDQEGGADKVLKEHENFRAFLTVEARIGELSRA 1540 (1856)
T ss_pred cchhhhhhHhHhhccHhhccceeeecccccccccchhhhhhhhHHhHhhccCCCccccccCcccccccccccccchhhHH
Confidence 6899999999999999999999998 4566666555431 357999999999999765 5566
Q ss_pred Hhhcceeeee
Q psy16637 152 LLRAGRIFVF 161 (264)
Q Consensus 152 lL~~s~kv~~ 161 (264)
....+.-.+.
T Consensus 1541 ~~~~~~ep~~ 1550 (1856)
T KOG1808|consen 1541 MRNRVVEPFL 1550 (1856)
T ss_pred hhccCcccee
Confidence 6666666555
No 87
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=69.34 E-value=41 Score=29.82 Aligned_cols=73 Identities=12% Similarity=0.127 Sum_probs=43.3
Q ss_pred cEEEEeCCCCCChhHHHHH--HHHhcccceEEecCCCCCHHHHHH-HHHHHHHcCCeEEeccccc--hhHHHHHHHHHhh
Q psy16637 54 PAVLCSVPGYDASGRVDDL--AAELGKQIASIAIGSAEGFNQADN-VINVAVRSGKWVLLKNVHL--APQWLVQLEKKLH 128 (264)
Q Consensus 54 Pii~i~s~g~DP~~~i~~l--A~~~~~~~~~islG~~~~~~~a~~-~l~~a~~~G~WllL~N~hL--~~~~l~~L~~~l~ 128 (264)
-||++-....|++..+..- ..+....++.+......+...|.. .++. .+|.||++=|.+. .+.|++.|.+.+.
T Consensus 32 EIIvVDd~S~d~t~~~~~~~~~~~~~~~v~vi~~~~n~G~~~a~N~g~~~--A~gd~i~fLD~D~~~~~~wL~~ll~~l~ 109 (299)
T cd02510 32 EIILVDDFSDKPELKLLLEEYYKKYLPKVKVLRLKKREGLIRARIAGARA--ATGDVLVFLDSHCEVNVGWLEPLLARIA 109 (299)
T ss_pred EEEEEECCCCchHHHHHHHHHHhhcCCcEEEEEcCCCCCHHHHHHHHHHH--ccCCEEEEEeCCcccCccHHHHHHHHHH
Confidence 4555555556777654422 223334566776655555433332 2222 4799999977655 4789998877764
No 88
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=69.24 E-value=88 Score=28.38 Aligned_cols=73 Identities=10% Similarity=0.066 Sum_probs=53.5
Q ss_pred CHHHHHHHHHHHHHc---C--CeEEeccccch-hHHHHHHHHHhhccCCCCCceEEEecCCCCCChHhHhhcceeeeecC
Q psy16637 90 GFNQADNVINVAVRS---G--KWVLLKNVHLA-PQWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEP 163 (264)
Q Consensus 90 ~~~~a~~~l~~a~~~---G--~WllL~N~hL~-~~~l~~L~~~l~~~~~h~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~ 163 (264)
+++.++.+.+..... | .-+++++++.. .+--+.|-+.+| ++.++-..+|+++....++..+..+|..+.+.+
T Consensus 76 ~idqiR~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LE--EPp~~~~fiL~~~~~~~ll~TI~SRcq~~~~~~ 153 (290)
T PRK05917 76 SIETPRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLE--DPPQHGVIILTSAKPQRLPPTIRSRSLSIHIPM 153 (290)
T ss_pred cHHHHHHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhh--cCCCCeEEEEEeCChhhCcHHHHhcceEEEccc
Confidence 355666666665543 3 34577999877 455567777776 466777888888888899999999999999975
Q ss_pred C
Q psy16637 164 P 164 (264)
Q Consensus 164 p 164 (264)
+
T Consensus 154 ~ 154 (290)
T PRK05917 154 E 154 (290)
T ss_pred h
Confidence 4
No 89
>KOG2028|consensus
Probab=68.57 E-value=30 Score=32.88 Aligned_cols=125 Identities=18% Similarity=0.328 Sum_probs=76.7
Q ss_pred hhHHhhhhcCCCcc-EEEEeCCCCCChhHHHHHHHHhcc-cceEEecCCC-CCHHHHHHHHHHHHHc------CCeEEec
Q psy16637 41 LPHIVEHELRGNVP-AVLCSVPGYDASGRVDDLAAELGK-QIASIAIGSA-EGFNQADNVINVAVRS------GKWVLLK 111 (264)
Q Consensus 41 L~~~~~~~s~~~~P-ii~i~s~g~DP~~~i~~lA~~~~~-~~~~islG~~-~~~~~a~~~l~~a~~~------G~WllL~ 111 (264)
|.+.++ + .+.| +|+--+||..-|..-.-+|...+. ++..|.+... .....+++++++|.+. -.-++++
T Consensus 153 lrs~ie--q-~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~dvR~ife~aq~~~~l~krkTilFiD 229 (554)
T KOG2028|consen 153 LRSLIE--Q-NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDVRDIFEQAQNEKSLTKRKTILFID 229 (554)
T ss_pred HHHHHH--c-CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHHHHHHHHHHHHHHhhhcceeEEEeH
Confidence 455564 3 4567 666789999988876666665433 3555555433 2235778888888754 3556777
Q ss_pred cccchh-----HHHHHHHHHh----hccCCCCCceEEEecCCCCCChHhHhhcceeeeecC--CccHHHHHHHHhcCC
Q psy16637 112 NVHLAP-----QWLVQLEKKL----HSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEP--PPGIKANLLRTFSTV 178 (264)
Q Consensus 112 N~hL~~-----~~l~~L~~~l----~~~~~h~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~--p~~lk~~l~~~~~~~ 178 (264)
.+|--- -||+++|.=. -..+.+|.|+| -..||.+|..++.|. +..++..|.+....+
T Consensus 230 EiHRFNksQQD~fLP~VE~G~I~lIGATTENPSFql----------n~aLlSRC~VfvLekL~~n~v~~iL~raia~l 297 (554)
T KOG2028|consen 230 EIHRFNKSQQDTFLPHVENGDITLIGATTENPSFQL----------NAALLSRCRVFVLEKLPVNAVVTILMRAIASL 297 (554)
T ss_pred HhhhhhhhhhhcccceeccCceEEEecccCCCccch----------hHHHHhccceeEeccCCHHHHHHHHHHHHHhh
Confidence 777321 1444443210 11133555554 468999999999995 667788888766533
No 90
>PRK08727 hypothetical protein; Validated
Probab=66.88 E-value=78 Score=27.32 Aligned_cols=119 Identities=18% Similarity=0.100 Sum_probs=73.0
Q ss_pred CCccEEEEeCCCCCChhHHHHHHHH---hcccceEEecCCCCCHHHHHHHHHHHHHcCCeEEeccccchh---HHHHHHH
Q psy16637 51 GNVPAVLCSVPGYDASGRVDDLAAE---LGKQIASIAIGSAEGFNQADNVINVAVRSGKWVLLKNVHLAP---QWLVQLE 124 (264)
Q Consensus 51 ~~~Pii~i~s~g~DP~~~i~~lA~~---~~~~~~~islG~~~~~~~a~~~l~~a~~~G~WllL~N~hL~~---~~l~~L~ 124 (264)
...|+++.-++|+.-|-....++.+ .|.++..+++.+... ...+.++ ...+-..|+|+++|... .|...+-
T Consensus 40 ~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~--~~~~~~~-~l~~~dlLiIDDi~~l~~~~~~~~~lf 116 (233)
T PRK08727 40 SSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG--RLRDALE-ALEGRSLVALDGLESIAGQREDEVALF 116 (233)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh--hHHHHHH-HHhcCCEEEEeCcccccCChHHHHHHH
Confidence 3457888889999999888877544 456677777754322 2223333 34555789999998764 4544454
Q ss_pred HHhhccCCCCCceEEEecCCCCC----ChHhHhhc---ceeeeecCC--ccHHHHHHH
Q psy16637 125 KKLHSLQPHANFRLFLTMEINPK----VPVNLLRA---GRIFVFEPP--PGIKANLLR 173 (264)
Q Consensus 125 ~~l~~~~~h~~FRL~lt~~~~~~----~P~~lL~~---s~kv~~e~p--~~lk~~l~~ 173 (264)
.+++... ..+-++++|++..+. +...+..+ +..+..++| ..++..+.+
T Consensus 117 ~l~n~~~-~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~ 173 (233)
T PRK08727 117 DFHNRAR-AAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRE 173 (233)
T ss_pred HHHHHHH-HcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHH
Confidence 4444332 123468998875542 34566666 778888876 344444443
No 91
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=66.83 E-value=65 Score=33.08 Aligned_cols=129 Identities=15% Similarity=0.148 Sum_probs=73.2
Q ss_pred hhHHhhhhcCCCccEEEEeCCCCCChhHHHHHHHHhcccceEEecCCCCCHHHHHHHHHHHH------HcCCeEEecccc
Q psy16637 41 LPHIVEHELRGNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAEGFNQADNVINVAV------RSGKWVLLKNVH 114 (264)
Q Consensus 41 L~~~~~~~s~~~~Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~~~~~~~a~~~l~~a~------~~G~WllL~N~h 114 (264)
|..++. .....+++|.-+||+.-|.....+|+..+..+..++-.. .+.+..+..++.+. .++.-++|+++|
T Consensus 43 L~~~i~--~~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~-~~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh 119 (725)
T PRK13341 43 LRRAIK--ADRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVL-AGVKDLRAEVDRAKERLERHGKRTILFIDEVH 119 (725)
T ss_pred HHHHHh--cCCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhh-hhhHHHHHHHHHHHHHhhhcCCceEEEEeChh
Confidence 455554 333346888899999999999999988765554443211 12223344444432 234578999998
Q ss_pred chhHH-HHHHHHHhhccCCCCCceEEEecCCC--CCChHhHhhcceeeeecCCc--cHHHHHHHHhc
Q psy16637 115 LAPQW-LVQLEKKLHSLQPHANFRLFLTMEIN--PKVPVNLLRAGRIFVFEPPP--GIKANLLRTFS 176 (264)
Q Consensus 115 L~~~~-l~~L~~~l~~~~~h~~FRL~lt~~~~--~~~P~~lL~~s~kv~~e~p~--~lk~~l~~~~~ 176 (264)
.-... -+.|-..++ ...+.+..++... ..++..++.+|..+.+++++ .+...+.+...
T Consensus 120 ~Ln~~qQdaLL~~lE----~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~ 182 (725)
T PRK13341 120 RFNKAQQDALLPWVE----NGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQ 182 (725)
T ss_pred hCCHHHHHHHHHHhc----CceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHH
Confidence 65322 223333332 1223333333333 25778888899888887654 34555554443
No 92
>CHL00195 ycf46 Ycf46; Provisional
Probab=66.10 E-value=87 Score=30.58 Aligned_cols=123 Identities=15% Similarity=0.198 Sum_probs=72.4
Q ss_pred CccEEEEeCCCCCChhHHHHHHHHhcccceEEecCC------CCCHHHHHHHHHHHHHcCC-eEEeccccchh-------
Q psy16637 52 NVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGS------AEGFNQADNVINVAVRSGK-WVLLKNVHLAP------- 117 (264)
Q Consensus 52 ~~Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~------~~~~~~a~~~l~~a~~~G~-WllL~N~hL~~------- 117 (264)
..++++.-+||..-|.....+|...+..+..++.|. |++....+++++.|..... =|++++++-..
T Consensus 259 pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~ 338 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKG 338 (489)
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCC
Confidence 346999999999999999999999988877776643 2333456677777766444 45567765321
Q ss_pred --HHHHH-HHHHhhccC-CCCCceEEEecCCCCCChHhHhhc--c-eeeeecCCc-cHHHHHHHH
Q psy16637 118 --QWLVQ-LEKKLHSLQ-PHANFRLFLTMEINPKVPVNLLRA--G-RIFVFEPPP-GIKANLLRT 174 (264)
Q Consensus 118 --~~l~~-L~~~l~~~~-~h~~FRL~lt~~~~~~~P~~lL~~--s-~kv~~e~p~-~lk~~l~~~ 174 (264)
....+ +...+..+. ..+.--++.|++....+|..+++. . .++.+..|+ .-|..+.+.
T Consensus 339 d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~ 403 (489)
T CHL00195 339 DSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKI 403 (489)
T ss_pred CchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHH
Confidence 12222 112222221 223333445666667899999873 3 345555444 224434443
No 93
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=64.32 E-value=55 Score=29.91 Aligned_cols=107 Identities=16% Similarity=0.127 Sum_probs=60.9
Q ss_pred cCCCccEEEEeCCCCCChhHHHHHHHH---hcccceEEecCCCCCHHHHHHHH-----------------HHHHHcCCeE
Q psy16637 49 LRGNVPAVLCSVPGYDASGRVDDLAAE---LGKQIASIAIGSAEGFNQADNVI-----------------NVAVRSGKWV 108 (264)
Q Consensus 49 s~~~~Pii~i~s~g~DP~~~i~~lA~~---~~~~~~~islG~~~~~~~a~~~l-----------------~~a~~~G~Wl 108 (264)
.....|+++.-.+|+.-+.....+... .+..+..|.-+.-.+ +..+..+ .-...+|+-|
T Consensus 26 a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~-~~~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL 104 (326)
T PRK11608 26 APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE-NLLDSELFGHEAGAFTGAQKRHPGRFERADGGTL 104 (326)
T ss_pred hCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCH-HHHHHHHccccccccCCcccccCCchhccCCCeE
Confidence 445679999988888765543333322 234566665554322 2222221 0123568899
Q ss_pred Eeccccchh-HHHHHHHHHhhccC---------CCCCceEEEecCCC-------CCChHhHhhcc
Q psy16637 109 LLKNVHLAP-QWLVQLEKKLHSLQ---------PHANFRLFLTMEIN-------PKVPVNLLRAG 156 (264)
Q Consensus 109 lL~N~hL~~-~~l~~L~~~l~~~~---------~h~~FRL~lt~~~~-------~~~P~~lL~~s 156 (264)
+|+|++..+ ..-..|...++.-. .+.++|+..+++.. ..|...|+..-
T Consensus 105 ~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~~l 169 (326)
T PRK11608 105 FLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLDRL 169 (326)
T ss_pred EeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHHHHcCCchHHHHHhc
Confidence 999997664 44456777665422 23478988887553 34555555553
No 94
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=64.28 E-value=74 Score=26.02 Aligned_cols=77 Identities=16% Similarity=0.207 Sum_probs=42.5
Q ss_pred CCccEEEEeCCCCCChhH-HHHHHHHhc-ccceEEecCCCCCHHHHHHHHHHHH--HcCCeEEecc--ccchhHHHHHHH
Q psy16637 51 GNVPAVLCSVPGYDASGR-VDDLAAELG-KQIASIAIGSAEGFNQADNVINVAV--RSGKWVLLKN--VHLAPQWLVQLE 124 (264)
Q Consensus 51 ~~~Pii~i~s~g~DP~~~-i~~lA~~~~-~~~~~islG~~~~~~~a~~~l~~a~--~~G~WllL~N--~hL~~~~l~~L~ 124 (264)
+...+|++-....|.+.+ +++++++.. ..+..+.-....+...+...+..++ .+|.|+++-+ +.+.+.|+..+.
T Consensus 29 ~~~eiivVdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~g~~~a~~d~i~~~D~D~~~~~~~l~~l~ 108 (196)
T cd02520 29 PKYEILFCVQDEDDPAIPVVRKLIAKYPNVDARLLIGGEKVGINPKVNNLIKGYEEARYDILVISDSDISVPPDYLRRMV 108 (196)
T ss_pred CCeEEEEEeCCCcchHHHHHHHHHHHCCCCcEEEEecCCcCCCCHhHHHHHHHHHhCCCCEEEEECCCceEChhHHHHHH
Confidence 445677777777787755 445555543 2333343332222111112233333 4799999966 455578998877
Q ss_pred HHh
Q psy16637 125 KKL 127 (264)
Q Consensus 125 ~~l 127 (264)
+.+
T Consensus 109 ~~~ 111 (196)
T cd02520 109 APL 111 (196)
T ss_pred HHh
Confidence 665
No 95
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=64.17 E-value=1.4e+02 Score=28.64 Aligned_cols=146 Identities=21% Similarity=0.307 Sum_probs=92.3
Q ss_pred HHhhcCCcHHHHHHHHHHHHhCcccccccCCCCChhHHhhhhcCCCccEEEEeCCCCCChhHHHHHHHHhcccceEEecC
Q psy16637 7 IQALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIG 86 (264)
Q Consensus 7 ~r~lrpDr~~~a~~~~v~~~lg~~~~~~~~~~~~L~~~~~~~s~~~~Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG 86 (264)
..-+||..+ .++.|-+..- .+.--|..+++ ++.-.-.||.-+||+.-|..-.-+|...+..+..+|=.
T Consensus 15 A~rmRP~~l--------de~vGQ~HLl--g~~~~lrr~v~--~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv 82 (436)
T COG2256 15 AERLRPKSL--------DEVVGQEHLL--GEGKPLRRAVE--AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV 82 (436)
T ss_pred HHHhCCCCH--------HHhcChHhhh--CCCchHHHHHh--cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc
Confidence 345677654 3444444332 23334566774 44444588999999999998888888888888777654
Q ss_pred CCCCHHHHHHHHHHHHH-c----CCeEEeccccch-----hHHHHHHHHHhhccCCCCCceEEE---ecC-CCCCChHhH
Q psy16637 87 SAEGFNQADNVINVAVR-S----GKWVLLKNVHLA-----PQWLVQLEKKLHSLQPHANFRLFL---TME-INPKVPVNL 152 (264)
Q Consensus 87 ~~~~~~~a~~~l~~a~~-~----G~WllL~N~hL~-----~~~l~~L~~~l~~~~~h~~FRL~l---t~~-~~~~~P~~l 152 (264)
.. +.+..++++++|.+ . ..-|+|+.+|=- ..+|+.+|+= .+.| |+| |.=.+-..|
T Consensus 83 ~~-gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G----------~iilIGATTENPsF~ln~AL 151 (436)
T COG2256 83 TS-GVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVENG----------TIILIGATTENPSFELNPAL 151 (436)
T ss_pred cc-cHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhcCC----------eEEEEeccCCCCCeeecHHH
Confidence 43 35778888888843 2 356677888732 1255555431 2222 111 222456789
Q ss_pred hhcceeeeecC--CccHHHHHHHHh
Q psy16637 153 LRAGRIFVFEP--PPGIKANLLRTF 175 (264)
Q Consensus 153 L~~s~kv~~e~--p~~lk~~l~~~~ 175 (264)
+.+|..+.+++ +..++..+.+..
T Consensus 152 lSR~~vf~lk~L~~~di~~~l~ra~ 176 (436)
T COG2256 152 LSRARVFELKPLSSEDIKKLLKRAL 176 (436)
T ss_pred hhhhheeeeecCCHHHHHHHHHHHH
Confidence 99999999986 677888888743
No 96
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=63.82 E-value=60 Score=28.34 Aligned_cols=73 Identities=19% Similarity=0.274 Sum_probs=44.2
Q ss_pred EEEEeCCCCCChhHHHHHHHHhcccceEEecCCCCCHHHHH-HHHHHHHH-cCCeEEe--ccccchhHHHHHHHHHhh
Q psy16637 55 AVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAEGFNQAD-NVINVAVR-SGKWVLL--KNVHLAPQWLVQLEKKLH 128 (264)
Q Consensus 55 ii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~~~~~~~a~-~~l~~a~~-~G~WllL--~N~hL~~~~l~~L~~~l~ 128 (264)
-|++...+++....+.++.++ ..+++.+..+...|...|. ..++.|.+ +|.||++ +++...+.++..+.+.++
T Consensus 23 ~iiVVDN~S~~~~~~~~~~~~-~~~i~~i~~~~N~G~a~a~N~Gi~~a~~~~~d~i~~lD~D~~~~~~~l~~l~~~~~ 99 (281)
T TIGR01556 23 RIIAVDNSPHSDQPLKNARLR-GQKIALIHLGDNQGIAGAQNQGLDASFRRGVQGVLLLDQDSRPGNAFLAAQWKLLS 99 (281)
T ss_pred EEEEEECcCCCcHhHHHHhcc-CCCeEEEECCCCcchHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence 355666664323445544332 2456777776666654443 34666665 5699999 556666788888877664
No 97
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=62.99 E-value=1e+02 Score=28.36 Aligned_cols=108 Identities=17% Similarity=0.121 Sum_probs=70.3
Q ss_pred EEEEeCCCCCChhHHHHHHHHhc-------------------------ccceEEecCC-----C-----CCHHHHHHHHH
Q psy16637 55 AVLCSVPGYDASGRVDDLAAELG-------------------------KQIASIAIGS-----A-----EGFNQADNVIN 99 (264)
Q Consensus 55 ii~i~s~g~DP~~~i~~lA~~~~-------------------------~~~~~islG~-----~-----~~~~~a~~~l~ 99 (264)
++|..++|..-+.....+|+... ..+..++-.+ | -+++.++.+++
T Consensus 24 ~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~iR~l~~ 103 (325)
T PRK08699 24 WLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAVREIID 103 (325)
T ss_pred EEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHHHHHHH
Confidence 56667778777777777776531 2244453211 1 13567777776
Q ss_pred HHHHc---C--CeEEeccccch-hHHHHHHHHHhhccCCCCCceEEEecCCCCCChHhHhhcceeeeecCC
Q psy16637 100 VAVRS---G--KWVLLKNVHLA-PQWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPP 164 (264)
Q Consensus 100 ~a~~~---G--~WllL~N~hL~-~~~l~~L~~~l~~~~~h~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p 164 (264)
.+... | ..++++.+|-. +.....|.+.+++.. ++-.+++++.....+|..+..+|..+.+.+|
T Consensus 104 ~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~--~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~ 172 (325)
T PRK08699 104 NVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPP--PQVVFLLVSHAADKVLPTIKSRCRKMVLPAP 172 (325)
T ss_pred HHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCc--CCCEEEEEeCChHhChHHHHHHhhhhcCCCC
Confidence 66543 2 45667888755 667777888887653 3334566666666899999999999999875
No 98
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=62.96 E-value=99 Score=31.63 Aligned_cols=114 Identities=16% Similarity=0.213 Sum_probs=72.1
Q ss_pred cEEEEeCCCCCChhHHHHHHHHhcccceEEecC------CCCCHHHHHHHHHHHHHcC-CeEEeccccch---------h
Q psy16637 54 PAVLCSVPGYDASGRVDDLAAELGKQIASIAIG------SAEGFNQADNVINVAVRSG-KWVLLKNVHLA---------P 117 (264)
Q Consensus 54 Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG------~~~~~~~a~~~l~~a~~~G-~WllL~N~hL~---------~ 117 (264)
-+++.-+||+.-|.....+|...+.++..++.. -|++......+++.|.+.. .=|++++++-. .
T Consensus 489 giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~ 568 (733)
T TIGR01243 489 GVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDT 568 (733)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCc
Confidence 378889999999999999999988777665421 1233345677788887664 66777887421 1
Q ss_pred H----HHHHHHHHhhccCCCCCceEEEecCCCCCChHhHhh--cceeeeecCCccH
Q psy16637 118 Q----WLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLR--AGRIFVFEPPPGI 167 (264)
Q Consensus 118 ~----~l~~L~~~l~~~~~h~~FRL~lt~~~~~~~P~~lL~--~s~kv~~e~p~~l 167 (264)
. .+..|-+.+..+....+.-+..+++....+...+++ +.-++.+=++++.
T Consensus 569 ~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~ 624 (733)
T TIGR01243 569 SVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDE 624 (733)
T ss_pred cHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCH
Confidence 1 222333333333344555566667666788889886 5555555555554
No 99
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=62.63 E-value=78 Score=25.25 Aligned_cols=73 Identities=12% Similarity=0.103 Sum_probs=40.8
Q ss_pred ccEEEEeCCCCCChhHHHHHHHHhcccceEEecCCCCCHHHHH-HHHHHHHHcCCeEEecc--ccchhHHHHHHHHHh
Q psy16637 53 VPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAEGFNQAD-NVINVAVRSGKWVLLKN--VHLAPQWLVQLEKKL 127 (264)
Q Consensus 53 ~Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~~~~~~~a~-~~l~~a~~~G~WllL~N--~hL~~~~l~~L~~~l 127 (264)
.-++++-....|.+.++.+-..+...++..+......+...|. ..++. ..|.|+++-+ +.+.+.|+..+.+.+
T Consensus 30 ~eiivvdd~s~d~t~~~~~~~~~~~~~i~~i~~~~n~G~~~a~n~g~~~--a~~d~i~~~D~D~~~~~~~l~~l~~~~ 105 (181)
T cd04187 30 YEIIFVDDGSTDRTLEILRELAARDPRVKVIRLSRNFGQQAALLAGLDH--ARGDAVITMDADLQDPPELIPEMLAKW 105 (181)
T ss_pred eEEEEEeCCCCccHHHHHHHHHhhCCCEEEEEecCCCCcHHHHHHHHHh--cCCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 3466665555666655544333333345666555554432332 23332 4689999954 445578888876653
No 100
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=62.52 E-value=85 Score=32.10 Aligned_cols=114 Identities=17% Similarity=0.179 Sum_probs=70.7
Q ss_pred CCccEEEEeCCCCCChhHHHHHHHHhcccceEEecC------CCCCHHHHHHHHHHHHHcC-CeEEeccccch-------
Q psy16637 51 GNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIG------SAEGFNQADNVINVAVRSG-KWVLLKNVHLA------- 116 (264)
Q Consensus 51 ~~~Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG------~~~~~~~a~~~l~~a~~~G-~WllL~N~hL~------- 116 (264)
+...+++.-++|+.-|..+..+|...+..+..++-. .++..+..+.+++.|.... .-|+|++++..
T Consensus 211 ~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~ 290 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEV 290 (733)
T ss_pred CCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCC
Confidence 445688999999999999999999887666555421 1122234566777776654 56888997643
Q ss_pred -----hHHHHHHHHHhhccCCCCCceEEEecCCCCCChHhHhhcc---eeeeecCC
Q psy16637 117 -----PQWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAG---RIFVFEPP 164 (264)
Q Consensus 117 -----~~~l~~L~~~l~~~~~h~~FRL~lt~~~~~~~P~~lL~~s---~kv~~e~p 164 (264)
......|-+.+..........++.+++....++..+.+.+ ..+.+..|
T Consensus 291 ~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P 346 (733)
T TIGR01243 291 TGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVP 346 (733)
T ss_pred cchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCc
Confidence 1233444444444444444555556666667887776532 34555544
No 101
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=62.14 E-value=88 Score=26.42 Aligned_cols=69 Identities=16% Similarity=0.248 Sum_probs=39.3
Q ss_pred EEEEeCCCCCChhHHHH-HHHHhcccceEEecCCCCCHHHHH-HHHHHHHHcCCeEEecc--ccchhHHHHHHHHHhh
Q psy16637 55 AVLCSVPGYDASGRVDD-LAAELGKQIASIAIGSAEGFNQAD-NVINVAVRSGKWVLLKN--VHLAPQWLVQLEKKLH 128 (264)
Q Consensus 55 ii~i~s~g~DP~~~i~~-lA~~~~~~~~~islG~~~~~~~a~-~~l~~a~~~G~WllL~N--~hL~~~~l~~L~~~l~ 128 (264)
+|++-....|++..+.+ ++++ .+..+......+...+. ..++. .+|.|+++-+ +.+.+.|+.++...++
T Consensus 63 iivvdd~s~d~t~~~~~~~~~~---~v~~i~~~~~~g~~~a~n~gi~~--a~~d~i~~lD~D~~~~~~~l~~l~~~~~ 135 (251)
T cd06439 63 IIVVSDGSTDGTAEIAREYADK---GVKLLRFPERRGKAAALNRALAL--ATGEIVVFTDANALLDPDALRLLVRHFA 135 (251)
T ss_pred EEEEECCCCccHHHHHHHHhhC---cEEEEEcCCCCChHHHHHHHHHH--cCCCEEEEEccccCcCHHHHHHHHHHhc
Confidence 55555555666655443 3322 35556555544432332 23333 3689999955 4556788888877663
No 102
>KOG0989|consensus
Probab=61.80 E-value=36 Score=31.37 Aligned_cols=111 Identities=14% Similarity=0.197 Sum_probs=70.7
Q ss_pred CCcc-EEEEeCCCCCChhHHHHHHHHhcc----cceEEecCCC--CCHHHHHHHHH---HHHHcC-----------CeEE
Q psy16637 51 GNVP-AVLCSVPGYDASGRVDDLAAELGK----QIASIAIGSA--EGFNQADNVIN---VAVRSG-----------KWVL 109 (264)
Q Consensus 51 ~~~P-ii~i~s~g~DP~~~i~~lA~~~~~----~~~~islG~~--~~~~~a~~~l~---~a~~~G-----------~Wll 109 (264)
...| .+|.-+||..-|+.+..+|++... +..+.++... .|......-++ +-.-.. .-++
T Consensus 55 ~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiI 134 (346)
T KOG0989|consen 55 RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIII 134 (346)
T ss_pred cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhhcCHHHHhhccccccCCCCCcceEEE
Confidence 4567 566789999999999999998742 2223322221 11122222222 111222 6788
Q ss_pred eccccchhHHH-HHHHHHhhccCCCCCceEEEecCCCCCChHhHhhcceeeeecC
Q psy16637 110 LKNVHLAPQWL-VQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEP 163 (264)
Q Consensus 110 L~N~hL~~~~l-~~L~~~l~~~~~h~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~ 163 (264)
|+.|+...+=. ..|-+.++....|. |..+.|+--+.+|..+..+|.|+.+.+
T Consensus 135 lDEcdsmtsdaq~aLrr~mE~~s~~t--rFiLIcnylsrii~pi~SRC~KfrFk~ 187 (346)
T KOG0989|consen 135 LDECDSMTSDAQAALRRTMEDFSRTT--RFILICNYLSRIIRPLVSRCQKFRFKK 187 (346)
T ss_pred EechhhhhHHHHHHHHHHHhccccce--EEEEEcCChhhCChHHHhhHHHhcCCC
Confidence 99999886422 34555565544444 666678888899999999999999975
No 103
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=61.74 E-value=76 Score=29.11 Aligned_cols=112 Identities=13% Similarity=0.091 Sum_probs=63.6
Q ss_pred cCCCccEEEEeCCCCCChhHHHHHH---HHhcccceEEecCCCCCHHHHHHHHH-----------------HHHHcCCeE
Q psy16637 49 LRGNVPAVLCSVPGYDASGRVDDLA---AELGKQIASIAIGSAEGFNQADNVIN-----------------VAVRSGKWV 108 (264)
Q Consensus 49 s~~~~Pii~i~s~g~DP~~~i~~lA---~~~~~~~~~islG~~~~~~~a~~~l~-----------------~a~~~G~Wl 108 (264)
.....|+++.-.+|+.-......+. .+.+..+..|.-+.-.+ +..+..+- -...+|+-|
T Consensus 19 a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~-~~l~~~lfG~~~g~~~ga~~~~~G~~~~a~gGtL 97 (329)
T TIGR02974 19 APLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSE-NLLDSELFGHEAGAFTGAQKRHQGRFERADGGTL 97 (329)
T ss_pred hCCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCCh-HHHHHHHhccccccccCcccccCCchhhCCCCEE
Confidence 3456799998888876554333222 22334566666554322 23333220 123468899
Q ss_pred Eeccccchh-HHHHHHHHHhhcc---------CCCCCceEEEecCCC-------CCChHhHhhcceeeee
Q psy16637 109 LLKNVHLAP-QWLVQLEKKLHSL---------QPHANFRLFLTMEIN-------PKVPVNLLRAGRIFVF 161 (264)
Q Consensus 109 lL~N~hL~~-~~l~~L~~~l~~~---------~~h~~FRL~lt~~~~-------~~~P~~lL~~s~kv~~ 161 (264)
+|++++..+ ..-..|-..++.- ..+.++|+..+++.. ..|...|+...-.+.+
T Consensus 98 ~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~rl~~~~i 167 (329)
T TIGR02974 98 FLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLDRLAFDVI 167 (329)
T ss_pred EeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHHHhcchhc
Confidence 999997654 4445666666532 135789999888543 2455555555433333
No 104
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=61.56 E-value=1.1e+02 Score=28.99 Aligned_cols=114 Identities=17% Similarity=0.254 Sum_probs=71.2
Q ss_pred CCccEEEEeCCCCCChhHHHHHHHHhcccceEEecC------CCCCHHHHHHHHHHHHHc-CCeEEeccccch-------
Q psy16637 51 GNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIG------SAEGFNQADNVINVAVRS-GKWVLLKNVHLA------- 116 (264)
Q Consensus 51 ~~~Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG------~~~~~~~a~~~l~~a~~~-G~WllL~N~hL~------- 116 (264)
+...+++.-+||..-|.....+|...+..+..++-. -+++....+..+..|... ..-|++++++..
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~ 257 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDA 257 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccc
Confidence 344688999999999999999999887665544311 122223455667766654 456777876532
Q ss_pred --------hHHHHHHHHHhhccCCCCCceEEEecCCCCCChHhHhhcc---eeeeecCC
Q psy16637 117 --------PQWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAG---RIFVFEPP 164 (264)
Q Consensus 117 --------~~~l~~L~~~l~~~~~h~~FRL~lt~~~~~~~P~~lL~~s---~kv~~e~p 164 (264)
..++..|-..++......+.++.++++....++..+++.+ .+|.+..|
T Consensus 258 ~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P 316 (398)
T PTZ00454 258 QTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLP 316 (398)
T ss_pred cCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCc
Confidence 0123333333333344567788888888788999888643 34655544
No 105
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=60.98 E-value=97 Score=25.80 Aligned_cols=72 Identities=11% Similarity=0.098 Sum_probs=39.1
Q ss_pred cEEEEeCCCCCChhHHHHHHHHhcccceEEecCCCCCHHHH-HHHHHHHHHcCCeEEecc--ccchhHHHHHHHHHhh
Q psy16637 54 PAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAEGFNQA-DNVINVAVRSGKWVLLKN--VHLAPQWLVQLEKKLH 128 (264)
Q Consensus 54 Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~~~~~~~a-~~~l~~a~~~G~WllL~N--~hL~~~~l~~L~~~l~ 128 (264)
.+|++-....|++..+.+-.......+..+.-..+ +...| ...++.| +|.||++=| +-+.+.|+..+...+.
T Consensus 33 evivvd~~s~d~~~~~~~~~~~~~~~v~~i~~~~~-~~~~a~N~g~~~a--~~d~v~~lD~D~~~~~~~l~~~~~~~~ 107 (249)
T cd02525 33 EIIVVDGGSTDGTREIVQEYAAKDPRIRLIDNPKR-IQSAGLNIGIRNS--RGDIIIRVDAHAVYPKDYILELVEALK 107 (249)
T ss_pred EEEEEeCCCCccHHHHHHHHHhcCCeEEEEeCCCC-CchHHHHHHHHHh--CCCEEEEECCCccCCHHHHHHHHHHHh
Confidence 56666666667765543322222333555543322 21222 2344444 799999954 4556788888776543
No 106
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=60.85 E-value=30 Score=29.25 Aligned_cols=35 Identities=14% Similarity=0.186 Sum_probs=18.6
Q ss_pred EEEEeCCCCCChhHHHHHHHH---hcccceEEecCCCC
Q psy16637 55 AVLCSVPGYDASGRVDDLAAE---LGKQIASIAIGSAE 89 (264)
Q Consensus 55 ii~i~s~g~DP~~~i~~lA~~---~~~~~~~islG~~~ 89 (264)
++|+.|++.+--..+.+.|++ .|..+..|++|...
T Consensus 111 vi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~~ 148 (187)
T cd01452 111 VAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEID 148 (187)
T ss_pred EEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCCC
Confidence 666666643322234444443 24556677777664
No 107
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=59.26 E-value=1.1e+02 Score=26.07 Aligned_cols=112 Identities=19% Similarity=0.276 Sum_probs=63.9
Q ss_pred CccEEEEeCCCCCChhHHHHHHHHh-----cccceEEecCCCCCHHHHH-------HHHHHHHHcCCeEEeccccchh--
Q psy16637 52 NVPAVLCSVPGYDASGRVDDLAAEL-----GKQIASIAIGSAEGFNQAD-------NVINVAVRSGKWVLLKNVHLAP-- 117 (264)
Q Consensus 52 ~~Pii~i~s~g~DP~~~i~~lA~~~-----~~~~~~islG~~~~~~~a~-------~~l~~a~~~G~WllL~N~hL~~-- 117 (264)
..|+++...+|..-|-.+..++.+. +.++.+++.-.-.. +.+. ..+....++-..|+|+++|.-.
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~-~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~~ 112 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIR-EFADALRDGEIEEFKDRLRSADLLIIDDIQFLAGK 112 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHH-HHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGTTH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHH-HHHHHHHcccchhhhhhhhcCCEEEEecchhhcCc
Confidence 3488888899999999888887653 23455554321000 0000 1133445567899999999873
Q ss_pred -HHHHHHHHHhhccCCCCCceEEEecCCCC-C---ChH---hHhhcceeeeecCCc
Q psy16637 118 -QWLVQLEKKLHSLQPHANFRLFLTMEINP-K---VPV---NLLRAGRIFVFEPPP 165 (264)
Q Consensus 118 -~~l~~L~~~l~~~~~h~~FRL~lt~~~~~-~---~P~---~lL~~s~kv~~e~p~ 165 (264)
.|-..|-.+++....+ +=++.+|++..+ . +.. +=+..+..+..++|.
T Consensus 113 ~~~q~~lf~l~n~~~~~-~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd 167 (219)
T PF00308_consen 113 QRTQEELFHLFNRLIES-GKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPD 167 (219)
T ss_dssp HHHHHHHHHHHHHHHHT-TSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----
T ss_pred hHHHHHHHHHHHHHHhh-CCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCC
Confidence 4566666666655333 338888885554 2 333 335566667776553
No 108
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=59.09 E-value=1.7e+02 Score=29.51 Aligned_cols=123 Identities=14% Similarity=0.168 Sum_probs=74.4
Q ss_pred cEEEEeCCCCCChhHHHHHHHHhcccceEEecCC------CCCHHHHHHHHHHHHHc-CCeEEeccccchh---------
Q psy16637 54 PAVLCSVPGYDASGRVDDLAAELGKQIASIAIGS------AEGFNQADNVINVAVRS-GKWVLLKNVHLAP--------- 117 (264)
Q Consensus 54 Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~------~~~~~~a~~~l~~a~~~-G~WllL~N~hL~~--------- 117 (264)
.+++.-++|..-|.....+|.+.+..+..++-.. +.+.......++.|.+. ...|++++++-..
T Consensus 187 gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g 266 (644)
T PRK10733 187 GVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGG 266 (644)
T ss_pred cEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCC
Confidence 4888899999999999999999887776665421 22334566777777654 4577888875431
Q ss_pred ---HHHHHHHHHhhcc---CCCCCceEEEecCCCCCChHhHhh--c-ceeeeecCCc--cHHHHHHHHhc
Q psy16637 118 ---QWLVQLEKKLHSL---QPHANFRLFLTMEINPKVPVNLLR--A-GRIFVFEPPP--GIKANLLRTFS 176 (264)
Q Consensus 118 ---~~l~~L~~~l~~~---~~h~~FRL~lt~~~~~~~P~~lL~--~-s~kv~~e~p~--~lk~~l~~~~~ 176 (264)
..-..+.+.|..+ ..+++.-++.+++....+...+++ + -.++.+..|. +-+..+...+.
T Consensus 267 ~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~ 336 (644)
T PRK10733 267 GHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMR 336 (644)
T ss_pred CchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhh
Confidence 1122333343332 334444445567766778888885 2 3556666555 23444443333
No 109
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=58.31 E-value=56 Score=29.85 Aligned_cols=30 Identities=27% Similarity=0.566 Sum_probs=26.7
Q ss_pred HHHHHHHHHHcCCeEEeccccchhHHHHHH
Q psy16637 94 ADNVINVAVRSGKWVLLKNVHLAPQWLVQL 123 (264)
Q Consensus 94 a~~~l~~a~~~G~WllL~N~hL~~~~l~~L 123 (264)
++..|+.|.++|.=++++.+|+.|.|+...
T Consensus 179 i~~~I~~~~~~g~s~IiEGvhl~P~~i~~~ 208 (301)
T PRK04220 179 VEAVIERALKEGISVIIEGVHIVPGFIKEK 208 (301)
T ss_pred HHHHHHHHHHhCCcEEEecCCCCHHHHHHh
Confidence 567788999999999999999999998874
No 110
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=57.95 E-value=55 Score=29.19 Aligned_cols=74 Identities=9% Similarity=0.007 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHH---HcCCe--EEeccccch-hHHHHHHHHHhhccCCCCCceEEEecCCCCCChHhHhhcceeeeecCC
Q psy16637 91 FNQADNVINVAV---RSGKW--VLLKNVHLA-PQWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPP 164 (264)
Q Consensus 91 ~~~a~~~l~~a~---~~G~W--llL~N~hL~-~~~l~~L~~~l~~~~~h~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p 164 (264)
++.++++.+... ..|+| +++++++.. ..-...|-+.||+ |.++-.++|+++....++.-+..+|..+.+..|
T Consensus 71 IdqIReL~~~l~~~p~~g~~KViII~~ae~mt~~AANALLKtLEE--PP~~t~fILit~~~~~LLpTIrSRCq~i~~~~p 148 (263)
T PRK06581 71 IEQIRKLQDFLSKTSAISGYKVAIIYSAELMNLNAANSCLKILED--APKNSYIFLITSRAASIISTIRSRCFKINVRSS 148 (263)
T ss_pred HHHHHHHHHHHhhCcccCCcEEEEEechHHhCHHHHHHHHHhhcC--CCCCeEEEEEeCChhhCchhHhhceEEEeCCCC
Confidence 345555555443 23333 566888766 4555677777764 445556777788778899999999999999977
Q ss_pred cc
Q psy16637 165 PG 166 (264)
Q Consensus 165 ~~ 166 (264)
..
T Consensus 149 ~~ 150 (263)
T PRK06581 149 IL 150 (263)
T ss_pred CH
Confidence 55
No 111
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=57.73 E-value=71 Score=26.25 Aligned_cols=94 Identities=10% Similarity=0.152 Sum_probs=52.9
Q ss_pred CCCccEEEEeCCCCCChhHHHHHHH---HhcccceEEecCCCCCHHHHHHHH-----------------HHHHHcCCeEE
Q psy16637 50 RGNVPAVLCSVPGYDASGRVDDLAA---ELGKQIASIAIGSAEGFNQADNVI-----------------NVAVRSGKWVL 109 (264)
Q Consensus 50 ~~~~Pii~i~s~g~DP~~~i~~lA~---~~~~~~~~islG~~~~~~~a~~~l-----------------~~a~~~G~Wll 109 (264)
....|+++.-.+|+.-...-..+.. +.+..+..|..+.-.+ +.++..| .-...+|+-|+
T Consensus 20 ~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~-~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~GtL~ 98 (168)
T PF00158_consen 20 SSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPE-ELLESELFGHEKGAFTGARSDKKGLLEQANGGTLF 98 (168)
T ss_dssp TSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-H-HHHHHHHHEBCSSSSTTTSSEBEHHHHHTTTSEEE
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhc-chhhhhhhccccccccccccccCCceeeccceEEe
Confidence 3347998888888765443332222 2234577777665432 3333322 11345789999
Q ss_pred eccccch-hHHHHHHHHHhhccC---------CCCCceEEEecCC
Q psy16637 110 LKNVHLA-PQWLVQLEKKLHSLQ---------PHANFRLFLTMEI 144 (264)
Q Consensus 110 L~N~hL~-~~~l~~L~~~l~~~~---------~h~~FRL~lt~~~ 144 (264)
|+|++.. +..=.+|-+.+++-+ ...+.|+..+++.
T Consensus 99 Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 99 LDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp EETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS
T ss_pred ecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCc
Confidence 9998544 566667878776421 2458888887754
No 112
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=57.53 E-value=65 Score=26.70 Aligned_cols=25 Identities=16% Similarity=0.291 Sum_probs=20.6
Q ss_pred cCCeEEe--ccccchhHHHHHHHHHhh
Q psy16637 104 SGKWVLL--KNVHLAPQWLVQLEKKLH 128 (264)
Q Consensus 104 ~G~WllL--~N~hL~~~~l~~L~~~l~ 128 (264)
+|.|+++ .++.+.+.|+..+.+.++
T Consensus 84 ~~d~i~~lD~D~~~~~~~l~~l~~~~~ 110 (234)
T cd06421 84 TGDFVAILDADHVPTPDFLRRTLGYFL 110 (234)
T ss_pred CCCEEEEEccccCcCccHHHHHHHHHh
Confidence 8999999 457788899999887764
No 113
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=56.95 E-value=54 Score=29.70 Aligned_cols=71 Identities=18% Similarity=0.250 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHH---cCCe--EEeccccch-hHHHHHHHHHhhccCCCCCceEEEecCCCCCChHhHhhcceeeeecC
Q psy16637 91 FNQADNVINVAVR---SGKW--VLLKNVHLA-PQWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEP 163 (264)
Q Consensus 91 ~~~a~~~l~~a~~---~G~W--llL~N~hL~-~~~l~~L~~~l~~~~~h~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~ 163 (264)
++.++.+++.+.. .|.| +++++++.. .+--+.|-+.|++ |.++-.++|++.....++.-+..+|.++.+..
T Consensus 86 idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~AaNaLLKtLEE--Pp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~ 162 (290)
T PRK07276 86 TDTIRELVKNFSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEE--PQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK 162 (290)
T ss_pred HHHHHHHHHHHhhCcccCCcEEEEeehhhhcCHHHHHHHHHHhcC--CCCCeEEEEEECChhhCchHHHHcceeeeCCC
Confidence 4566666665554 3544 788999877 4555667676763 44555677777777788889999999999954
No 114
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=56.73 E-value=52 Score=27.66 Aligned_cols=92 Identities=16% Similarity=0.221 Sum_probs=57.8
Q ss_pred CCCccEEEEeCCCCCChhHHHHHHHHh---cccceEEecCCCCCHHHHHHHHHHHHHcCCeEEeccccchh---HHHHHH
Q psy16637 50 RGNVPAVLCSVPGYDASGRVDDLAAEL---GKQIASIAIGSAEGFNQADNVINVAVRSGKWVLLKNVHLAP---QWLVQL 123 (264)
Q Consensus 50 ~~~~Pii~i~s~g~DP~~~i~~lA~~~---~~~~~~islG~~~~~~~a~~~l~~a~~~G~WllL~N~hL~~---~~l~~L 123 (264)
....|+++.-++|+.-|.....+++.. +.++..++...-. ......+ ...++..-|+|+++|... .|...|
T Consensus 36 ~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~-~~~~~~~lLvIDdi~~l~~~~~~~~~L 112 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA--QADPEVL-EGLEQADLVCLDDVEAIAGQPEWQEAL 112 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH--HhHHHHH-hhcccCCEEEEeChhhhcCChHHHHHH
Confidence 445689999999999998888888764 3445555543211 1112222 234556689999999764 567777
Q ss_pred HHHhhccCCCCCceEEEecCCC
Q psy16637 124 EKKLHSLQPHANFRLFLTMEIN 145 (264)
Q Consensus 124 ~~~l~~~~~h~~FRL~lt~~~~ 145 (264)
...++..... +-++++|+...
T Consensus 113 ~~~l~~~~~~-~~~iIits~~~ 133 (226)
T TIGR03420 113 FHLYNRVREA-GGRLLIAGRAA 133 (226)
T ss_pred HHHHHHHHHc-CCeEEEECCCC
Confidence 7766543222 23788887654
No 115
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=56.56 E-value=1.1e+02 Score=24.89 Aligned_cols=72 Identities=15% Similarity=0.149 Sum_probs=39.3
Q ss_pred cEEEEeCCCCCChhHHHHHHHHhccc--ceEEecCCCCCHHHH-HHHHHHHH-HcCCeEEecc--ccchhHHHHHHHHHh
Q psy16637 54 PAVLCSVPGYDASGRVDDLAAELGKQ--IASIAIGSAEGFNQA-DNVINVAV-RSGKWVLLKN--VHLAPQWLVQLEKKL 127 (264)
Q Consensus 54 Pii~i~s~g~DP~~~i~~lA~~~~~~--~~~islG~~~~~~~a-~~~l~~a~-~~G~WllL~N--~hL~~~~l~~L~~~l 127 (264)
.+|++-....|.+..+ +++.+.. ++.+......+...+ ...++.|. ..|.|+++=| +-+.+.|+..+.+.+
T Consensus 28 eiiivD~~s~d~t~~~---~~~~~~~~~i~~~~~~~n~g~~~~~n~~~~~a~~~~~d~v~~ld~D~~~~~~~l~~l~~~~ 104 (202)
T cd04185 28 HIIVIDNASTDGTAEW---LTSLGDLDNIVYLRLPENLGGAGGFYEGVRRAYELGYDWIWLMDDDAIPDPDALEKLLAYA 104 (202)
T ss_pred eEEEEECCCCcchHHH---HHHhcCCCceEEEECccccchhhHHHHHHHHHhccCCCEEEEeCCCCCcChHHHHHHHHHH
Confidence 4655544444555433 3333322 345544443332222 23455554 3688999955 555578999888776
Q ss_pred h
Q psy16637 128 H 128 (264)
Q Consensus 128 ~ 128 (264)
.
T Consensus 105 ~ 105 (202)
T cd04185 105 D 105 (202)
T ss_pred h
Confidence 5
No 116
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=56.33 E-value=42 Score=30.94 Aligned_cols=73 Identities=23% Similarity=0.295 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHH---cCC--eEEeccccch-hHHHHHHHHHhhccCCCCCceEEEecCCCCCChHhHhhcceeeeecCC
Q psy16637 91 FNQADNVINVAVR---SGK--WVLLKNVHLA-PQWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPP 164 (264)
Q Consensus 91 ~~~a~~~l~~a~~---~G~--WllL~N~hL~-~~~l~~L~~~l~~~~~h~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p 164 (264)
++.++.+++.... .|+ -+++++++-. .+--+.|-|.||+ |.++=.++|+++....++.-+..+|..+.+.+|
T Consensus 90 idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~ 167 (334)
T PRK07993 90 VDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEE--PPENTWFFLACREPARLLATLRSRCRLHYLAPP 167 (334)
T ss_pred HHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHhccccccCCCC
Confidence 4566666655442 344 4677999877 4566677777764 445556677788778899999999999988876
Q ss_pred c
Q psy16637 165 P 165 (264)
Q Consensus 165 ~ 165 (264)
+
T Consensus 168 ~ 168 (334)
T PRK07993 168 P 168 (334)
T ss_pred C
Confidence 4
No 117
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=56.32 E-value=1.1e+02 Score=24.76 Aligned_cols=71 Identities=24% Similarity=0.318 Sum_probs=37.4
Q ss_pred cEEEEeCCCCCChh-HHHH-HHHHhcccceEEecCCCCCHHHHH-HHHHHHHHcCCeEEec--cccchhHHHHHHHHHh
Q psy16637 54 PAVLCSVPGYDASG-RVDD-LAAELGKQIASIAIGSAEGFNQAD-NVINVAVRSGKWVLLK--NVHLAPQWLVQLEKKL 127 (264)
Q Consensus 54 Pii~i~s~g~DP~~-~i~~-lA~~~~~~~~~islG~~~~~~~a~-~~l~~a~~~G~WllL~--N~hL~~~~l~~L~~~l 127 (264)
-+|++-....|++. .+.+ ++.+ ...+..+......+...+. ..++. .+|.|+++= ++.+.+.|+..+.+.+
T Consensus 33 eiivvd~gs~d~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~a~n~g~~~--a~~d~i~~ld~D~~~~~~~l~~~~~~~ 108 (202)
T cd04184 33 ELCIADDASTDPEVKRVLKKYAAQ-DPRIKVVFREENGGISAATNSALEL--ATGEFVALLDHDDELAPHALYEVVKAL 108 (202)
T ss_pred EEEEEeCCCCChHHHHHHHHHHhc-CCCEEEEEcccCCCHHHHHHHHHHh--hcCCEEEEECCCCcCChHHHHHHHHHH
Confidence 35554343345532 3332 2322 2345555555444432332 22332 368999994 4677788998887766
No 118
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=56.05 E-value=50 Score=30.65 Aligned_cols=73 Identities=18% Similarity=0.163 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHH---cCCe--EEeccccch-hHHHHHHHHHhhccCCCCCceEEEecCCCCCChHhHhhcceeeeecCCc
Q psy16637 92 NQADNVINVAVR---SGKW--VLLKNVHLA-PQWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPP 165 (264)
Q Consensus 92 ~~a~~~l~~a~~---~G~W--llL~N~hL~-~~~l~~L~~~l~~~~~h~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p~ 165 (264)
+.++.+++.... .|+| +++.++|-. .+--+.|-+.|| ++.++=.++|+++....++..++.+|..+.+.+|+
T Consensus 115 dqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLE--EPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~ 192 (342)
T PRK06964 115 EQVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLE--EPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPA 192 (342)
T ss_pred HHHHHHHHHhccCCccCCceEEEEechhhcCHHHHHHHHHHhc--CCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCC
Confidence 556666555432 3444 456999766 455566777776 45556677778887788999999999999998765
Q ss_pred c
Q psy16637 166 G 166 (264)
Q Consensus 166 ~ 166 (264)
.
T Consensus 193 ~ 193 (342)
T PRK06964 193 P 193 (342)
T ss_pred H
Confidence 3
No 119
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO). Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B (6.3.5.4 from EC) catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase [].; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A 1Q15_D 1Q19_C 1CT9_C 3K32_F.
Probab=56.03 E-value=20 Score=30.50 Aligned_cols=48 Identities=29% Similarity=0.396 Sum_probs=30.3
Q ss_pred hHHhhhhcCCCccEEEEeCCCCCChhHHHHHHHH-hcccceEEecCCCCC
Q psy16637 42 PHIVEHELRGNVPAVLCSVPGYDASGRVDDLAAE-LGKQIASIAIGSAEG 90 (264)
Q Consensus 42 ~~~~~~~s~~~~Pii~i~s~g~DP~~~i~~lA~~-~~~~~~~islG~~~~ 90 (264)
.+.+........|+.+.+|.|.| +..|..+|++ .+..+..+++|.+..
T Consensus 7 ~~av~~rl~~~~~i~~~LSGGlD-Ss~i~~~~~~~~~~~~~~~t~~~~~~ 55 (255)
T PF00733_consen 7 EEAVARRLRSDKPIGILLSGGLD-SSAIAALAARQGGPPIKTFTIGFEDD 55 (255)
T ss_dssp HHHHHHHCGCTSEEEEE--SSHH-HHHHHHHHHHTCCSEEEEEEEECSSC
T ss_pred HHHHHHHHhcCCCEEEECCCChh-HHHHHHHHHHhhCCceeEEEEEcCCC
Confidence 33443223467799999999999 4456666666 566777777776644
No 120
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=55.14 E-value=79 Score=24.02 Aligned_cols=73 Identities=21% Similarity=0.367 Sum_probs=39.6
Q ss_pred cEEEEeCCCCCChhHH-HHHHHHhcccceEEecCCCCCHHHHH-HHHHHHHHcCCeEEecc--ccchhHHHHHHHHHhhc
Q psy16637 54 PAVLCSVPGYDASGRV-DDLAAELGKQIASIAIGSAEGFNQAD-NVINVAVRSGKWVLLKN--VHLAPQWLVQLEKKLHS 129 (264)
Q Consensus 54 Pii~i~s~g~DP~~~i-~~lA~~~~~~~~~islG~~~~~~~a~-~~l~~a~~~G~WllL~N--~hL~~~~l~~L~~~l~~ 129 (264)
=+|++-....|.+..+ .++++ .+..++.+......+...+. ..++. .+|.|+++-+ +-..+.|+..+.+.++.
T Consensus 29 eiivvdd~s~d~~~~~~~~~~~-~~~~i~~i~~~~n~g~~~~~n~~~~~--a~~~~i~~ld~D~~~~~~~l~~l~~~~~~ 105 (169)
T PF00535_consen 29 EIIVVDDGSTDETEEILEEYAE-SDPNIRYIRNPENLGFSAARNRGIKH--AKGEYILFLDDDDIISPDWLEELVEALEK 105 (169)
T ss_dssp EEEEEECS-SSSHHHHHHHHHC-CSTTEEEEEHCCCSHHHHHHHHHHHH----SSEEEEEETTEEE-TTHHHHHHHHHHH
T ss_pred EEEEeccccccccccccccccc-cccccccccccccccccccccccccc--cceeEEEEeCCCceEcHHHHHHHHHHHHh
Confidence 3545444333444433 33333 34567778777655433332 23444 3566999855 45557899998888764
No 121
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=55.11 E-value=1.1e+02 Score=29.96 Aligned_cols=96 Identities=10% Similarity=0.134 Sum_probs=58.4
Q ss_pred cCCCccEEEEeCCCCCChhHHHHHHHH---hcccceEEecCCCCCHHHHHHHH------------H-----HHHHcCCeE
Q psy16637 49 LRGNVPAVLCSVPGYDASGRVDDLAAE---LGKQIASIAIGSAEGFNQADNVI------------N-----VAVRSGKWV 108 (264)
Q Consensus 49 s~~~~Pii~i~s~g~DP~~~i~~lA~~---~~~~~~~islG~~~~~~~a~~~l------------~-----~a~~~G~Wl 108 (264)
.....|+++.-.+|+.-+.....+... .+..+..|..+.-.+ +..+..+ . -...+|+-|
T Consensus 216 a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL 294 (534)
T TIGR01817 216 ARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE-TLLESELFGHEKGAFTGAIAQRKGRFELADGGTL 294 (534)
T ss_pred hCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH-HHHHHHHcCCCCCccCCCCcCCCCcccccCCCeE
Confidence 345679999999998776654444443 344677777655432 2333332 0 113468899
Q ss_pred EeccccchhH-HHHHHHHHhhccC---------CCCCceEEEecCCC
Q psy16637 109 LLKNVHLAPQ-WLVQLEKKLHSLQ---------PHANFRLFLTMEIN 145 (264)
Q Consensus 109 lL~N~hL~~~-~l~~L~~~l~~~~---------~h~~FRL~lt~~~~ 145 (264)
+|++++..+. .-..|-..+++-. .+.++|++.+++..
T Consensus 295 ~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~ 341 (534)
T TIGR01817 295 FLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRD 341 (534)
T ss_pred EEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCC
Confidence 9999986643 3345666665321 23479999887554
No 122
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=54.58 E-value=1.1e+02 Score=24.60 Aligned_cols=71 Identities=11% Similarity=0.186 Sum_probs=38.2
Q ss_pred cEEEEeCCC-CCChhH-HHHHHHHhcccceEEecCCCCCHHHHH-HHHHHHHHcCCeEEecccc--chhHHHHHHHHHhh
Q psy16637 54 PAVLCSVPG-YDASGR-VDDLAAELGKQIASIAIGSAEGFNQAD-NVINVAVRSGKWVLLKNVH--LAPQWLVQLEKKLH 128 (264)
Q Consensus 54 Pii~i~s~g-~DP~~~-i~~lA~~~~~~~~~islG~~~~~~~a~-~~l~~a~~~G~WllL~N~h--L~~~~l~~L~~~l~ 128 (264)
-+|++-... .|-+.. +.+++++.+ +..+......+...|. ..++. .+|.|+++=+.. +.+.|+..+.+.++
T Consensus 31 eiiivdd~ss~d~t~~~~~~~~~~~~--i~~i~~~~n~G~~~a~N~g~~~--a~gd~i~~lD~Dd~~~~~~l~~~~~~~~ 106 (201)
T cd04195 31 EVVLVKDGPVTQSLNEVLEEFKRKLP--LKVVPLEKNRGLGKALNEGLKH--CTYDWVARMDTDDISLPDRFEKQLDFIE 106 (201)
T ss_pred EEEEEECCCCchhHHHHHHHHHhcCC--eEEEEcCccccHHHHHHHHHHh--cCCCEEEEeCCccccCcHHHHHHHHHHH
Confidence 455544433 233444 334444433 5566665555543433 22332 379999996654 44778887766653
No 123
>PRK06893 DNA replication initiation factor; Validated
Probab=54.03 E-value=75 Score=27.29 Aligned_cols=91 Identities=9% Similarity=0.195 Sum_probs=55.5
Q ss_pred CccE-EEEeCCCCCChhHHHHHHHHh---cccceEEecCCCCCHHHHHHHHHHHHHcCCeEEeccccch---hHHHHHHH
Q psy16637 52 NVPA-VLCSVPGYDASGRVDDLAAEL---GKQIASIAIGSAEGFNQADNVINVAVRSGKWVLLKNVHLA---PQWLVQLE 124 (264)
Q Consensus 52 ~~Pi-i~i~s~g~DP~~~i~~lA~~~---~~~~~~islG~~~~~~~a~~~l~~a~~~G~WllL~N~hL~---~~~l~~L~ 124 (264)
..|. ++.-++|+.-|-.+..+|.+. +.++..+++...+. ...+.++ ..++..+|+|+++|.. ..|-..|.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~--~~~~~~~-~~~~~dlLilDDi~~~~~~~~~~~~l~ 114 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQY--FSPAVLE-NLEQQDLVCLDDLQAVIGNEEWELAIF 114 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhh--hhHHHHh-hcccCCEEEEeChhhhcCChHHHHHHH
Confidence 4474 677888999999888888763 45666777743222 1122333 3456789999999874 45666666
Q ss_pred HHhhccCCCCCceEEEecCCC
Q psy16637 125 KKLHSLQPHANFRLFLTMEIN 145 (264)
Q Consensus 125 ~~l~~~~~h~~FRL~lt~~~~ 145 (264)
.+++.......-.+.+|++..
T Consensus 115 ~l~n~~~~~~~~illits~~~ 135 (229)
T PRK06893 115 DLFNRIKEQGKTLLLISADCS 135 (229)
T ss_pred HHHHHHHHcCCcEEEEeCCCC
Confidence 666544322222344555543
No 124
>PRK05642 DNA replication initiation factor; Validated
Probab=53.79 E-value=69 Score=27.68 Aligned_cols=90 Identities=14% Similarity=0.190 Sum_probs=58.5
Q ss_pred ccEEEEeCCCCCChhHHHHHHHH---hcccceEEecCCCCCHHHHHHHHHHHHHcCCeEEeccccch---hHHHHHHHHH
Q psy16637 53 VPAVLCSVPGYDASGRVDDLAAE---LGKQIASIAIGSAEGFNQADNVINVAVRSGKWVLLKNVHLA---PQWLVQLEKK 126 (264)
Q Consensus 53 ~Pii~i~s~g~DP~~~i~~lA~~---~~~~~~~islG~~~~~~~a~~~l~~a~~~G~WllL~N~hL~---~~~l~~L~~~ 126 (264)
.|+++.-++|+.-|-.+..++.+ .+.++.+++...-. ... ..+.+..++.+.|+++++|.- +.|-..|-.+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~--~~~-~~~~~~~~~~d~LiiDDi~~~~~~~~~~~~Lf~l 122 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELL--DRG-PELLDNLEQYELVCLDDLDVIAGKADWEEALFHL 122 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHH--hhh-HHHHHhhhhCCEEEEechhhhcCChHHHHHHHHH
Confidence 57888899999999888887753 35567777764321 111 223444566789999999954 4677777777
Q ss_pred hhccCCCCCceEEEecCCCC
Q psy16637 127 LHSLQPHANFRLFLTMEINP 146 (264)
Q Consensus 127 l~~~~~h~~FRL~lt~~~~~ 146 (264)
++.... .+=++.+|++..+
T Consensus 123 ~n~~~~-~g~~ilits~~~p 141 (234)
T PRK05642 123 FNRLRD-SGRRLLLAASKSP 141 (234)
T ss_pred HHHHHh-cCCEEEEeCCCCH
Confidence 654421 2336888876443
No 125
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=53.19 E-value=1.7e+02 Score=26.18 Aligned_cols=73 Identities=18% Similarity=0.097 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHH----HcC--CeEEeccccch-hHHHHHHHHHhhccCCCCCceEEEecCCCCCChHhHhhcceeeeec
Q psy16637 90 GFNQADNVINVAV----RSG--KWVLLKNVHLA-PQWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFE 162 (264)
Q Consensus 90 ~~~~a~~~l~~a~----~~G--~WllL~N~hL~-~~~l~~L~~~l~~~~~h~~FRL~lt~~~~~~~P~~lL~~s~kv~~e 162 (264)
+.+.++.+++... +.| ..+++.+++.. ..-...|-+.||+ |.++-..+|+++....++.-+..+|.++.+-
T Consensus 68 ~id~ir~l~~~l~~~s~e~~~~KV~II~~ae~m~~~AaNaLLK~LEE--Pp~~t~fiLit~~~~~lLpTI~SRCq~~~~~ 145 (261)
T PRK05818 68 KKEDALSIINKLNRPSVESNGKKIYIIYGIEKLNKQSANSLLKLIEE--PPKNTYGIFTTRNENNILNTILSRCVQYVVL 145 (261)
T ss_pred CHHHHHHHHHHHccCchhcCCCEEEEeccHhhhCHHHHHHHHHhhcC--CCCCeEEEEEECChHhCchHhhhheeeeecC
Confidence 3456666665433 223 56777999877 4566677777764 5566677888888889999999999999885
Q ss_pred CC
Q psy16637 163 PP 164 (264)
Q Consensus 163 ~p 164 (264)
.+
T Consensus 146 ~~ 147 (261)
T PRK05818 146 SK 147 (261)
T ss_pred Ch
Confidence 43
No 126
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=52.62 E-value=70 Score=33.06 Aligned_cols=92 Identities=17% Similarity=0.229 Sum_probs=60.7
Q ss_pred cEEEEeCCCCCChhHHHHHHHHhcccceEEecCCCCCHHH---------------HHHHHHHHHHc--CCeEEeccccch
Q psy16637 54 PAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAEGFNQ---------------ADNVINVAVRS--GKWVLLKNVHLA 116 (264)
Q Consensus 54 Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~~~~~~~---------------a~~~l~~a~~~--G~WllL~N~hL~ 116 (264)
+++|+-++|+.-|.....+|+..+.++..+.+++-.+... ....+..++++ ..-|++++++.+
T Consensus 490 ~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka 569 (758)
T PRK11034 490 SFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhh
Confidence 4788889999999999999999887777776644211000 11245555442 356888999888
Q ss_pred -hHHHHHHHHHhhccC------CCCCce---EEEecCCC
Q psy16637 117 -PQWLVQLEKKLHSLQ------PHANFR---LFLTMEIN 145 (264)
Q Consensus 117 -~~~l~~L~~~l~~~~------~h~~FR---L~lt~~~~ 145 (264)
+.....|-+.++.-. ..-+|| +++|++..
T Consensus 570 ~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g 608 (758)
T PRK11034 570 HPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAG 608 (758)
T ss_pred hHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcC
Confidence 556667777776421 235788 77887643
No 127
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=52.57 E-value=1.6e+02 Score=26.76 Aligned_cols=72 Identities=18% Similarity=0.197 Sum_probs=41.2
Q ss_pred cEEEEeCCCCCChhHH-HHHHHHhcccceEEecCCCCCHHHH-HHHHHHHHHcCCeEEeccccch--hHHHHHHHHHh
Q psy16637 54 PAVLCSVPGYDASGRV-DDLAAELGKQIASIAIGSAEGFNQA-DNVINVAVRSGKWVLLKNVHLA--PQWLVQLEKKL 127 (264)
Q Consensus 54 Pii~i~s~g~DP~~~i-~~lA~~~~~~~~~islG~~~~~~~a-~~~l~~a~~~G~WllL~N~hL~--~~~l~~L~~~l 127 (264)
-+|++-....|.|.++ .+++++.+.++..+....+.+...| ...++. .+|.|+++=++.+. +.+++++.+.+
T Consensus 40 EIIvVDDgS~D~T~~il~~~~~~~~~~v~~i~~~~n~G~~~A~~~G~~~--A~gd~vv~~DaD~q~~p~~i~~l~~~~ 115 (325)
T PRK10714 40 EILLIDDGSSDNSAEMLVEAAQAPDSHIVAILLNRNYGQHSAIMAGFSH--VTGDLIITLDADLQNPPEEIPRLVAKA 115 (325)
T ss_pred EEEEEeCCCCCcHHHHHHHHHhhcCCcEEEEEeCCCCCHHHHHHHHHHh--CCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 4666655566877665 4444443455555555544443233 233443 37999999666554 67777766554
No 128
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=50.95 E-value=1.5e+02 Score=27.31 Aligned_cols=78 Identities=17% Similarity=0.231 Sum_probs=43.8
Q ss_pred CCccEEEEeCCCCCChhH-HHHHHHHhc-ccceEEecCCCCCH-HHHHHHHH-HHHHcCCeEEecc--ccchhHHHHHHH
Q psy16637 51 GNVPAVLCSVPGYDASGR-VDDLAAELG-KQIASIAIGSAEGF-NQADNVIN-VAVRSGKWVLLKN--VHLAPQWLVQLE 124 (264)
Q Consensus 51 ~~~Pii~i~s~g~DP~~~-i~~lA~~~~-~~~~~islG~~~~~-~~a~~~l~-~a~~~G~WllL~N--~hL~~~~l~~L~ 124 (264)
|.--+|++-....|++.. +++++++.. ..++.+.-+...+. ..+....+ ....+|.|+++-+ +...++|+.++.
T Consensus 69 p~~EIivvdd~s~D~t~~iv~~~~~~~p~~~i~~v~~~~~~G~~~K~~~l~~~~~~a~ge~i~~~DaD~~~~p~~L~~lv 148 (373)
T TIGR03472 69 PGFQMLFGVQDPDDPALAVVRRLRADFPDADIDLVIDARRHGPNRKVSNLINMLPHARHDILVIADSDISVGPDYLRQVV 148 (373)
T ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHhCCCCceEEEECCCCCCCChHHHHHHHHHHhccCCEEEEECCCCCcChhHHHHHH
Confidence 344566666666788755 455555432 23555533332221 12222211 1234799999955 677789999887
Q ss_pred HHhh
Q psy16637 125 KKLH 128 (264)
Q Consensus 125 ~~l~ 128 (264)
..++
T Consensus 149 ~~~~ 152 (373)
T TIGR03472 149 APLA 152 (373)
T ss_pred HHhc
Confidence 7764
No 129
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=50.88 E-value=52 Score=32.40 Aligned_cols=62 Identities=23% Similarity=0.270 Sum_probs=44.2
Q ss_pred HcCCeEEeccccch-hHHHHHHHHHhhcc--------------------------CCCCCceEEEecCCC-CCChHhHhh
Q psy16637 103 RSGKWVLLKNVHLA-PQWLVQLEKKLHSL--------------------------QPHANFRLFLTMEIN-PKVPVNLLR 154 (264)
Q Consensus 103 ~~G~WllL~N~hL~-~~~l~~L~~~l~~~--------------------------~~h~~FRL~lt~~~~-~~~P~~lL~ 154 (264)
.+|+-|+|+++|.. +.....|-+.++.- ....+||+..++... ..+|..+..
T Consensus 174 a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs 253 (531)
T TIGR02902 174 AHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS 253 (531)
T ss_pred cCCcEEEEechhhCCHHHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh
Confidence 46889999999766 44555555555321 124689998876544 479999999
Q ss_pred cceeeeecCC
Q psy16637 155 AGRIFVFEPP 164 (264)
Q Consensus 155 ~s~kv~~e~p 164 (264)
+|.++.+.+.
T Consensus 254 R~~~I~f~pL 263 (531)
T TIGR02902 254 RCVEIFFRPL 263 (531)
T ss_pred hhheeeCCCC
Confidence 9999998864
No 130
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=50.75 E-value=96 Score=22.63 Aligned_cols=91 Identities=19% Similarity=0.154 Sum_probs=57.5
Q ss_pred cEEEEeCCCCCChhHHHHHHHHhccc---ceEEecCCC--------------------CCHHHHHHHHHHHHHcC-CeEE
Q psy16637 54 PAVLCSVPGYDASGRVDDLAAELGKQ---IASIAIGSA--------------------EGFNQADNVINVAVRSG-KWVL 109 (264)
Q Consensus 54 Pii~i~s~g~DP~~~i~~lA~~~~~~---~~~islG~~--------------------~~~~~a~~~l~~a~~~G-~Wll 109 (264)
.++++-++|+.-|..+..+|...+.. +..++.+.. .....++..++.|.... ..++
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vii 83 (148)
T smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLI 83 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 46777888999999999999887643 555555432 12245566677777666 8889
Q ss_pred eccccchhHHHH-HHHHH------hhccCCCCCceEEEecCC
Q psy16637 110 LKNVHLAPQWLV-QLEKK------LHSLQPHANFRLFLTMEI 144 (264)
Q Consensus 110 L~N~hL~~~~l~-~L~~~------l~~~~~h~~FRL~lt~~~ 144 (264)
+++++.....-. ..... ........+..++++++.
T Consensus 84 iDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 84 LDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred EECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 999876643222 21111 112234667788888875
No 131
>KOG2792|consensus
Probab=50.69 E-value=34 Score=30.55 Aligned_cols=46 Identities=17% Similarity=0.467 Sum_probs=30.1
Q ss_pred HcCCeEEe----ccc-cchhHHHHHHHHHhhccCCCCCc---eEEEecCCCCCC
Q psy16637 103 RSGKWVLL----KNV-HLAPQWLVQLEKKLHSLQPHANF---RLFLTMEINPKV 148 (264)
Q Consensus 103 ~~G~WllL----~N~-hL~~~~l~~L~~~l~~~~~h~~F---RL~lt~~~~~~~ 148 (264)
=.|.|++| .+| ..||.=|..+.+.++.++..+.- =||||++|-..-
T Consensus 137 f~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~ 190 (280)
T KOG2792|consen 137 FLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDS 190 (280)
T ss_pred cccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCC
Confidence 35899998 677 56677666666666655433333 488888885443
No 132
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=50.54 E-value=2e+02 Score=27.75 Aligned_cols=120 Identities=14% Similarity=0.166 Sum_probs=82.7
Q ss_pred ccEEEEeCCCCCChhHHHHHHHHhcccceEEecC------CCCCHHHHHHHHHHHH-HcCCeEEeccccchhH-------
Q psy16637 53 VPAVLCSVPGYDASGRVDDLAAELGKQIASIAIG------SAEGFNQADNVINVAV-RSGKWVLLKNVHLAPQ------- 118 (264)
Q Consensus 53 ~Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG------~~~~~~~a~~~l~~a~-~~G~WllL~N~hL~~~------- 118 (264)
.-+++.-+||.--|..-..+|...+..+..+..+ -|+....+++++..|- .....|+++.+.--.+
T Consensus 277 ~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~ 356 (494)
T COG0464 277 KGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSED 356 (494)
T ss_pred CeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCc
Confidence 3478888999988888888888766555544332 1233356778888888 4567888887643322
Q ss_pred -----HHHHHHHHhhccCCCCCceEEEecCCCCCChHhHhh--cceeeeecCCccHHHHHH
Q psy16637 119 -----WLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLR--AGRIFVFEPPPGIKANLL 172 (264)
Q Consensus 119 -----~l~~L~~~l~~~~~h~~FRL~lt~~~~~~~P~~lL~--~s~kv~~e~p~~lk~~l~ 172 (264)
.+..|-..+..++...+..++-+++....++..++. +--++.+-++++....+.
T Consensus 357 ~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~ 417 (494)
T COG0464 357 GSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLE 417 (494)
T ss_pred hHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHH
Confidence 223333333445667777788888888899999999 878888888888866544
No 133
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=49.82 E-value=61 Score=29.59 Aligned_cols=80 Identities=18% Similarity=0.122 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHH-----cCCeEEeccccch-hHHHHHHHHHhhccCCCCCceEEEecCCCCCChHhHhhcceeeeecCC-
Q psy16637 92 NQADNVINVAVR-----SGKWVLLKNVHLA-PQWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPP- 164 (264)
Q Consensus 92 ~~a~~~l~~a~~-----~G~WllL~N~hL~-~~~l~~L~~~l~~~~~h~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p- 164 (264)
+.++.+++.+.. ...-++++++|-. ..-.+.|-+.|++.. +..++|+++....++..+..+|..+.+.++
T Consensus 107 d~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp---~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~ 183 (314)
T PRK07399 107 EQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG---NGTLILIAPSPESLLPTIVSRCQIIPFYRLS 183 (314)
T ss_pred HHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC---CCeEEEEECChHhCcHHHHhhceEEecCCCC
Confidence 345555544432 2356777998876 344556666666433 457777777777899999999999999875
Q ss_pred -ccHHHHHHHH
Q psy16637 165 -PGIKANLLRT 174 (264)
Q Consensus 165 -~~lk~~l~~~ 174 (264)
..+...+.+.
T Consensus 184 ~~~~~~~L~~~ 194 (314)
T PRK07399 184 DEQLEQVLKRL 194 (314)
T ss_pred HHHHHHHHHHh
Confidence 3445555443
No 134
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=49.05 E-value=1e+02 Score=29.16 Aligned_cols=77 Identities=21% Similarity=0.276 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHcC------CeEEeccccch-hHHHHHHHHHhhccCCCCCceEEEecC------------CCCCChHhHh
Q psy16637 93 QADNVINVAVRSG------KWVLLKNVHLA-PQWLVQLEKKLHSLQPHANFRLFLTME------------INPKVPVNLL 153 (264)
Q Consensus 93 ~a~~~l~~a~~~G------~WllL~N~hL~-~~~l~~L~~~l~~~~~h~~FRL~lt~~------------~~~~~P~~lL 153 (264)
.+++.+.+..++| +.++++++|+- ..-..-|.+.+++- ..| =+.+.++ ....+|..+|
T Consensus 261 eInk~V~~wieegkAelvpGVLFIDEvHmLDiEcFsfLnralEs~-~sP--iiIlATNRg~~~irGt~~~sphGiP~DlL 337 (398)
T PF06068_consen 261 EINKKVNKWIEEGKAELVPGVLFIDEVHMLDIECFSFLNRALESE-LSP--IIILATNRGITKIRGTDIISPHGIPLDLL 337 (398)
T ss_dssp HHHHHHHHHHHCTSEEEEE-EEEEESGGGSBHHHHHHHHHHHTST-T----EEEEEES-SEEE-BTTS-EEETT--HHHH
T ss_pred HHhHHHHHHHhcCceEEecceEEecchhhccHHHHHHHHHHhcCC-CCc--EEEEecCceeeeccCccCcCCCCCCcchH
Confidence 4556677788887 89999999987 44445555555531 111 1122211 2246999999
Q ss_pred hcceeeeecCCc--cHHHHHH
Q psy16637 154 RAGRIFVFEPPP--GIKANLL 172 (264)
Q Consensus 154 ~~s~kv~~e~p~--~lk~~l~ 172 (264)
.+++.|...+.. .+++.+.
T Consensus 338 DRllII~t~py~~~ei~~Il~ 358 (398)
T PF06068_consen 338 DRLLIIRTKPYSEEEIKQILK 358 (398)
T ss_dssp TTEEEEEE----HHHHHHHHH
T ss_pred hhcEEEECCCCCHHHHHHHHH
Confidence 999999988643 3666554
No 135
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=48.95 E-value=52 Score=28.89 Aligned_cols=122 Identities=14% Similarity=0.109 Sum_probs=67.5
Q ss_pred EEEEeCCCCCChhHHHHHHHHhcccceEEecCCCCCHHHHHHHHHHHHHcCCeEEeccccchhHHH-HHHHHHhhcc---
Q psy16637 55 AVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAEGFNQADNVINVAVRSGKWVLLKNVHLAPQWL-VQLEKKLHSL--- 130 (264)
Q Consensus 55 ii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~~~~~~~a~~~l~~a~~~G~WllL~N~hL~~~~l-~~L~~~l~~~--- 130 (264)
+||.-+||..-|..-.-+|+..+.++...|=..-+....... +-..+++|..++++.+|=-..-. +.|...++..
T Consensus 53 ~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~~dl~~-il~~l~~~~ILFIDEIHRlnk~~qe~LlpamEd~~id 131 (233)
T PF05496_consen 53 MLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKAGDLAA-ILTNLKEGDILFIDEIHRLNKAQQEILLPAMEDGKID 131 (233)
T ss_dssp EEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SCHHHHH-HHHT--TT-EEEECTCCC--HHHHHHHHHHHHCSEEE
T ss_pred EEEECCCccchhHHHHHHHhccCCCeEeccchhhhhHHHHHH-HHHhcCCCcEEEEechhhccHHHHHHHHHHhccCeEE
Confidence 789999999999999999999998887665433222222222 33456889999999999654322 2333333311
Q ss_pred ------------C-CCCCceEEEecCCCCCChHhHhhccee---eeecCCccHHHHHHHHhcC
Q psy16637 131 ------------Q-PHANFRLFLTMEINPKVPVNLLRAGRI---FVFEPPPGIKANLLRTFST 177 (264)
Q Consensus 131 ------------~-~h~~FRL~lt~~~~~~~P~~lL~~s~k---v~~e~p~~lk~~l~~~~~~ 177 (264)
. .-+.|-|.=.+.-...++.++..+.-- +-|=.+..+...+.+...-
T Consensus 132 iiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~ 194 (233)
T PF05496_consen 132 IIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARI 194 (233)
T ss_dssp EEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHC
T ss_pred EEeccccccceeeccCCCceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHH
Confidence 0 125677776665556677776665433 3334467777777765543
No 136
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=48.87 E-value=1.6e+02 Score=24.60 Aligned_cols=70 Identities=19% Similarity=0.351 Sum_probs=39.7
Q ss_pred EEEeCCCCCChhHH-HHHHHHh---cccceEEecCCCCCH-HHH-HHHHHHHHHcCCeEEeccccc--hhHHHHHHHHHh
Q psy16637 56 VLCSVPGYDASGRV-DDLAAEL---GKQIASIAIGSAEGF-NQA-DNVINVAVRSGKWVLLKNVHL--APQWLVQLEKKL 127 (264)
Q Consensus 56 i~i~s~g~DP~~~i-~~lA~~~---~~~~~~islG~~~~~-~~a-~~~l~~a~~~G~WllL~N~hL--~~~~l~~L~~~l 127 (264)
|++.....|+|..+ +++.++. +.++..+.-+...+. ..| ...++.| +|.||++-|+.. .+.|+..+...+
T Consensus 35 IiVvD~s~D~t~~~~~~~~~~~~~~~~~i~~~~~~~~~G~k~~a~n~g~~~a--~~~~i~~~DaD~~~~~~~l~~~~~~~ 112 (232)
T cd06437 35 IQVLDDSTDETVRLAREIVEEYAAQGVNIKHVRRADRTGYKAGALAEGMKVA--KGEYVAIFDADFVPPPDFLQKTPPYF 112 (232)
T ss_pred EEEEECCCCcHHHHHHHHHHHHhhcCCceEEEECCCCCCCchHHHHHHHHhC--CCCEEEEEcCCCCCChHHHHHhhhhh
Confidence 34455577887654 4444332 345555654433332 122 2344433 899999988654 478988876655
No 137
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=45.99 E-value=1.6e+02 Score=23.68 Aligned_cols=72 Identities=14% Similarity=0.071 Sum_probs=38.9
Q ss_pred cEEEEeCCCCCChhHHHHHHHHhcccceEEecCCCCCHHHHH-HHHHHHH---HcCCeEEecc--ccchhHHHHHHHHHh
Q psy16637 54 PAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAEGFNQAD-NVINVAV---RSGKWVLLKN--VHLAPQWLVQLEKKL 127 (264)
Q Consensus 54 Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~~~~~~~a~-~~l~~a~---~~G~WllL~N--~hL~~~~l~~L~~~l 127 (264)
-++++.....|.|.++ +++.+..+....-....+...|. ..++.+. .+|.||++-+ +.+.+.|+..+...+
T Consensus 30 eiivvdd~s~D~t~~~---~~~~~~~~~~~~~~~~~gk~~aln~g~~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~ 106 (183)
T cd06438 30 RIFVVADNCTDDTAQV---ARAAGATVLERHDPERRGKGYALDFGFRHLLNLADDPDAVVVFDADNLVDPNALEELNARF 106 (183)
T ss_pred EEEEEeCCCCchHHHH---HHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCCChhHHHHHHHHH
Confidence 3555555555666544 44444443332222222322332 2344443 3689998854 566688999887766
Q ss_pred h
Q psy16637 128 H 128 (264)
Q Consensus 128 ~ 128 (264)
.
T Consensus 107 ~ 107 (183)
T cd06438 107 A 107 (183)
T ss_pred h
Confidence 3
No 138
>PRK08118 topology modulation protein; Reviewed
Probab=45.87 E-value=78 Score=25.82 Aligned_cols=58 Identities=17% Similarity=0.209 Sum_probs=36.8
Q ss_pred EEEEeCCCCCChhHHHHHHHHhcccceE---EecC---CCCCHHHHHHHHHHHHHcCCeEEecc
Q psy16637 55 AVLCSVPGYDASGRVDDLAAELGKQIAS---IAIG---SAEGFNQADNVINVAVRSGKWVLLKN 112 (264)
Q Consensus 55 ii~i~s~g~DP~~~i~~lA~~~~~~~~~---islG---~~~~~~~a~~~l~~a~~~G~WllL~N 112 (264)
|+++-++|+.-|.....+++..+..+.. +--. .....+...+.+++..++..||+=.|
T Consensus 4 I~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~w~~~~~~~~~~~~~~~~~~~~wVidG~ 67 (167)
T PRK08118 4 IILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPNWEGVPKEEQITVQNELVKEDEWIIDGN 67 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcCCCHHHHHHHHHHHhcCCCEEEeCC
Confidence 5667789999999888899888754222 1101 11112345566777777788987554
No 139
>PRK11204 N-glycosyltransferase; Provisional
Probab=45.63 E-value=2.5e+02 Score=26.13 Aligned_cols=71 Identities=15% Similarity=0.195 Sum_probs=40.2
Q ss_pred EEEEeCCCCCChhHH-HHHHHHhcccceEEecCCCCCHHHHH-HHHHHHHHcCCeEEeccc--cchhHHHHHHHHHhh
Q psy16637 55 AVLCSVPGYDASGRV-DDLAAELGKQIASIAIGSAEGFNQAD-NVINVAVRSGKWVLLKNV--HLAPQWLVQLEKKLH 128 (264)
Q Consensus 55 ii~i~s~g~DP~~~i-~~lA~~~~~~~~~islG~~~~~~~a~-~~l~~a~~~G~WllL~N~--hL~~~~l~~L~~~l~ 128 (264)
++++.....|.+.++ ++++++ ..+++.+......+...|. ..++. .+|.|+++=|+ .+.++++.++.+.++
T Consensus 86 iiVvdD~s~d~t~~~l~~~~~~-~~~v~~i~~~~n~Gka~aln~g~~~--a~~d~i~~lDaD~~~~~d~L~~l~~~~~ 160 (420)
T PRK11204 86 VIAINDGSSDNTGEILDRLAAQ-IPRLRVIHLAENQGKANALNTGAAA--ARSEYLVCIDGDALLDPDAAAYMVEHFL 160 (420)
T ss_pred EEEEECCCCccHHHHHHHHHHh-CCcEEEEEcCCCCCHHHHHHHHHHH--cCCCEEEEECCCCCCChhHHHHHHHHHH
Confidence 555555455666554 344433 3345566555444422221 22332 36999999554 566889998887764
No 140
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=45.48 E-value=1.6e+02 Score=28.26 Aligned_cols=112 Identities=13% Similarity=0.226 Sum_probs=68.0
Q ss_pred cEEEEeCCCCCChhHHHHHHHHhcccceEEecCC------CCCHHHHHHHHHHHHHcCC-eEEeccccch----------
Q psy16637 54 PAVLCSVPGYDASGRVDDLAAELGKQIASIAIGS------AEGFNQADNVINVAVRSGK-WVLLKNVHLA---------- 116 (264)
Q Consensus 54 Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~------~~~~~~a~~~l~~a~~~G~-WllL~N~hL~---------- 116 (264)
-++++-+||+.-|.....+|...+..+..+.-.+ +++...+...++.|..... -|+|++++..
T Consensus 219 gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sg 298 (438)
T PTZ00361 219 GVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSG 298 (438)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCc
Confidence 3788899999999999999998876655443211 2222345666776665443 3556665421
Q ss_pred --hHHHHHHHHHhh---ccCCCCCceEEEecCCCCCChHhHhhc---ceeeeecCCc
Q psy16637 117 --PQWLVQLEKKLH---SLQPHANFRLFLTMEINPKVPVNLLRA---GRIFVFEPPP 165 (264)
Q Consensus 117 --~~~l~~L~~~l~---~~~~h~~FRL~lt~~~~~~~P~~lL~~---s~kv~~e~p~ 165 (264)
...-..+...+. ......+.+++++++....++..+++. -.+|.+..|.
T Consensus 299 g~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd 355 (438)
T PTZ00361 299 GEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPD 355 (438)
T ss_pred ccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCC
Confidence 011122222332 233456778888888777898888853 3567777663
No 141
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=45.39 E-value=65 Score=26.72 Aligned_cols=76 Identities=21% Similarity=0.357 Sum_probs=38.4
Q ss_pred CccEEEEeCCCCCChh-HHHHHHHHhcc-cceEEecCCCCCHHHHHHHHHHHH--HcCCeEEe--ccccchhHHHHHHHH
Q psy16637 52 NVPAVLCSVPGYDASG-RVDDLAAELGK-QIASIAIGSAEGFNQADNVINVAV--RSGKWVLL--KNVHLAPQWLVQLEK 125 (264)
Q Consensus 52 ~~Pii~i~s~g~DP~~-~i~~lA~~~~~-~~~~islG~~~~~~~a~~~l~~a~--~~G~WllL--~N~hL~~~~l~~L~~ 125 (264)
..-++++.....|++. .+.+++.+... .++.+.-....+..-....++.++ .+|.||++ .++-+.+.|+..+..
T Consensus 30 ~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~v~vi~~~~~~g~~~k~~a~n~~~~~~~~d~i~~lD~D~~~~p~~l~~~~~ 109 (228)
T PF13641_consen 30 RLEVVVVDDGSDDETAEILRALAARYPRVRVRVIRRPRNPGPGGKARALNEALAAARGDYILFLDDDTVLDPDWLERLLA 109 (228)
T ss_dssp TEEEEEEEE-SSS-GCTTHHHHHHTTGG-GEEEEE----HHHHHHHHHHHHHHHH---SEEEEE-SSEEE-CHHHHHHHH
T ss_pred CeEEEEEECCCChHHHHHHHHHHHHcCCCceEEeecCCCCCcchHHHHHHHHHHhcCCCEEEEECCCcEECHHHHHHHHH
Confidence 3456666655556664 46667766653 455554433111101112233333 35899999 446677899999888
Q ss_pred Hh
Q psy16637 126 KL 127 (264)
Q Consensus 126 ~l 127 (264)
.+
T Consensus 110 ~~ 111 (228)
T PF13641_consen 110 AF 111 (228)
T ss_dssp HH
T ss_pred HH
Confidence 77
No 142
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=45.30 E-value=34 Score=34.96 Aligned_cols=110 Identities=16% Similarity=0.259 Sum_probs=68.6
Q ss_pred ccEEEE-eCCCCCChhHHHHHHHHhcccceEEecCCCCCHHHHH---------------HHHHHHHHcCCeEEeccccch
Q psy16637 53 VPAVLC-SVPGYDASGRVDDLAAELGKQIASIAIGSAEGFNQAD---------------NVINVAVRSGKWVLLKNVHLA 116 (264)
Q Consensus 53 ~Pii~i-~s~g~DP~~~i~~lA~~~~~~~~~islG~~~~~~~a~---------------~~l~~a~~~G~WllL~N~hL~ 116 (264)
-||+|+ -+||+.-|+.-...|+..|.++..+|+|.-......+ +.+.+|-.+.=-++|+.+.-.
T Consensus 350 GpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm 429 (782)
T COG0466 350 GPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKM 429 (782)
T ss_pred CcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhCCcCCeEEeechhhc
Confidence 388886 5779999999999999999999999999754322222 223344444456777776433
Q ss_pred h-HH----HHHHHHHhhccCCCCCc-------------eEEEe-cCCCCCChHhHhhcceeeeecC
Q psy16637 117 P-QW----LVQLEKKLHSLQPHANF-------------RLFLT-MEINPKVPVNLLRAGRIFVFEP 163 (264)
Q Consensus 117 ~-~~----l~~L~~~l~~~~~h~~F-------------RL~lt-~~~~~~~P~~lL~~s~kv~~e~ 163 (264)
. ++ -+.|-+.|.- +-+.+| =+|++ ++.-..+|.+||.+-=.|....
T Consensus 430 ~ss~rGDPaSALLEVLDP-EQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRMEiI~lsg 494 (782)
T COG0466 430 GSSFRGDPASALLEVLDP-EQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRMEVIRLSG 494 (782)
T ss_pred cCCCCCChHHHHHhhcCH-hhcCchhhccccCccchhheEEEeecCccccCChHHhcceeeeeecC
Confidence 2 11 1233233320 001111 24554 5555679999999988887764
No 143
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=45.20 E-value=2.4e+02 Score=25.61 Aligned_cols=116 Identities=21% Similarity=0.209 Sum_probs=67.4
Q ss_pred EEEeCCCCCChhHHHHHHHHh--------cc-----cceEEec-CCCCCHHHHHHHHHHHHH------cCCeEEeccccc
Q psy16637 56 VLCSVPGYDASGRVDDLAAEL--------GK-----QIASIAI-GSAEGFNQADNVINVAVR------SGKWVLLKNVHL 115 (264)
Q Consensus 56 i~i~s~g~DP~~~i~~lA~~~--------~~-----~~~~isl-G~~~~~~~a~~~l~~a~~------~G~WllL~N~hL 115 (264)
+|....|..-...+..+|+.. +. .+..+.- |..-..+.++.+++.... +..-+++++++-
T Consensus 22 Lf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir~l~~~~~~~~~~~~~~KvvII~~~e~ 101 (299)
T PRK07132 22 LLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFLSAINKLYFSSFVQSQKKILIIKNIEK 101 (299)
T ss_pred EEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHHHHHHHhccCCcccCCceEEEEecccc
Confidence 355555666666777777764 11 2233321 222233455555555432 224567799876
Q ss_pred h-hHHHHHHHHHhhccCCCCCceEEEecCCCCCChHhHhhcceeeeecCC--ccHHHHHHH
Q psy16637 116 A-PQWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPP--PGIKANLLR 173 (264)
Q Consensus 116 ~-~~~l~~L~~~l~~~~~h~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p--~~lk~~l~~ 173 (264)
. .+-.+.|-+.+++ +.++=.++++++....+...+..+|..+.+.++ ..++..+.+
T Consensus 102 m~~~a~NaLLK~LEE--Pp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 102 TSNSLLNALLKTIEE--PPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLS 160 (299)
T ss_pred cCHHHHHHHHHHhhC--CCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHH
Confidence 6 3455567777764 444445555665556788889999999999876 344444443
No 144
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=44.35 E-value=1.6e+02 Score=26.26 Aligned_cols=181 Identities=15% Similarity=0.255 Sum_probs=91.4
Q ss_pred CCCccEEEEeCCCCCChhHHHHHHHHhcc-c--ceEEecCCCCCHHHHHHHHHHHHHc----------CCe--EEecccc
Q psy16637 50 RGNVPAVLCSVPGYDASGRVDDLAAELGK-Q--IASIAIGSAEGFNQADNVINVAVRS----------GKW--VLLKNVH 114 (264)
Q Consensus 50 ~~~~Pii~i~s~g~DP~~~i~~lA~~~~~-~--~~~islG~~~~~~~a~~~l~~a~~~----------G~W--llL~N~h 114 (264)
..+.|++++-++|+.-|..+..+-++... + ...+.+........+.+.++..+++ |.. +++++++
T Consensus 31 ~~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiDDlN 110 (272)
T PF12775_consen 31 SNGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFIDDLN 110 (272)
T ss_dssp HCTEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCCTTECECTTEEEEEESSSEEEEEEETTT
T ss_pred HcCCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEecccC
Confidence 35779999999999999999888766542 3 2345554332212333333333322 233 3558888
Q ss_pred chh--H-----HHHHHHHHhhcc---C-CCCCce-----EEE-ecCCCC---CChHhHhhcceeeeecCCccHHHHHHHH
Q psy16637 115 LAP--Q-----WLVQLEKKLHSL---Q-PHANFR-----LFL-TMEINP---KVPVNLLRAGRIFVFEPPPGIKANLLRT 174 (264)
Q Consensus 115 L~~--~-----~l~~L~~~l~~~---~-~h~~FR-----L~l-t~~~~~---~~P~~lL~~s~kv~~e~p~~lk~~l~~~ 174 (264)
+.. . -++-|-+.++.- . ..-.|+ .|+ ++.|.. .+|.-++.....+.+..|.. +.|..+
T Consensus 111 ~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f~i~~~~~p~~--~sl~~I 188 (272)
T PF12775_consen 111 MPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHFNILNIPYPSD--ESLNTI 188 (272)
T ss_dssp -S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTEEEEE----TC--CHHHHH
T ss_pred CCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhheEEEEecCCCh--HHHHHH
Confidence 874 1 222223333211 1 111222 122 345432 48999999999999987754 333333
Q ss_pred hcCCChhh-----hcc-ChhHHHHHHHHHHHHHHHHhhhhhccccCCccccccCHHHHHHHHHHHH
Q psy16637 175 FSTVPATR-----MMK-APNERARLYFLLAWFHAIVQERLRYVPLGWSKFYEFNESDLRVACDTLD 234 (264)
Q Consensus 175 ~~~~~~~~-----~~~-~~~~~~~l~~~L~~~Hail~eR~~y~p~Gws~~Y~f~~~Dl~~~~~~l~ 234 (264)
|..+-... +.. -.....+++-+..-++.-+. ..|.|---.--|-||-.|+...++=+.
T Consensus 189 f~~il~~~l~~~~f~~~v~~~~~~lv~ati~ly~~i~--~~~~ptp~k~HY~FnlRDlsrv~qGil 252 (272)
T PF12775_consen 189 FSSILQSHLKNGGFPEDVQKLADKLVQATIELYQKIR--QQFLPTPSKPHYTFNLRDLSRVFQGIL 252 (272)
T ss_dssp HHHHHHHHTCHTTSSGGGCCCHHHHHHHHHHHHHHHH--HHS-TTTTCTTTTSHHHHHHHHHHHHH
T ss_pred HHHHHhhhcccCCCChHHHHHHHHHHHHHHHHHHhhh--cccCCCCccceeeccHHHHHHHHHHHH
Confidence 32211100 100 00112344444444444443 566665545789999999988766654
No 145
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=44.08 E-value=1.4e+02 Score=28.16 Aligned_cols=96 Identities=13% Similarity=0.150 Sum_probs=54.2
Q ss_pred cCCCccEEEEeCCCCCChhHHHHHHH---HhcccceEEecCCCCCHHHHHHHH------------HH-----HHHcCCeE
Q psy16637 49 LRGNVPAVLCSVPGYDASGRVDDLAA---ELGKQIASIAIGSAEGFNQADNVI------------NV-----AVRSGKWV 108 (264)
Q Consensus 49 s~~~~Pii~i~s~g~DP~~~i~~lA~---~~~~~~~~islG~~~~~~~a~~~l------------~~-----a~~~G~Wl 108 (264)
.....|+++...+|...+.....+.. +.+..+..|.-+.-.+ +..+..+ .. ...+|+-|
T Consensus 159 a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl 237 (445)
T TIGR02915 159 APSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPE-NLLESELFGYEKGAFTGAVKQTLGKIEYAHGGTL 237 (445)
T ss_pred hCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCCh-HHHHHHhcCCCCCCcCCCccCCCCceeECCCCEE
Confidence 34567998888888776543222222 2233566665544322 2222221 00 02467889
Q ss_pred Eeccccchh-HHHHHHHHHhhccC---------CCCCceEEEecCCC
Q psy16637 109 LLKNVHLAP-QWLVQLEKKLHSLQ---------PHANFRLFLTMEIN 145 (264)
Q Consensus 109 lL~N~hL~~-~~l~~L~~~l~~~~---------~h~~FRL~lt~~~~ 145 (264)
+|++++..+ ..-..|-+.+++-. ...++|+..+++..
T Consensus 238 ~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~ 284 (445)
T TIGR02915 238 FLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQD 284 (445)
T ss_pred EEechhhCCHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCC
Confidence 999997664 44456766665321 23589999988655
No 146
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=43.20 E-value=2.8e+02 Score=27.29 Aligned_cols=125 Identities=14% Similarity=0.106 Sum_probs=70.2
Q ss_pred CCccEEEEeCCCCCChhHHHHHHHHhccc--------ceEEecC--------CCCCHHHHHHHHHHHHH---c--CCeEE
Q psy16637 51 GNVPAVLCSVPGYDASGRVDDLAAELGKQ--------IASIAIG--------SAEGFNQADNVINVAVR---S--GKWVL 109 (264)
Q Consensus 51 ~~~Pii~i~s~g~DP~~~i~~lA~~~~~~--------~~~islG--------~~~~~~~a~~~l~~a~~---~--G~Wll 109 (264)
+...+++.-+||..-|.....+|...+.. ...+++. .++.....+.+++.|.+ + ..-|+
T Consensus 215 ~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIf 294 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVF 294 (512)
T ss_pred CCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEE
Confidence 33458999999999999999999886432 1122211 11222244455555544 2 34566
Q ss_pred eccccchh-------------HHHHHHHHHhhccCCCCCceEEEecCCCCCChHhHhhc---ceeeeecCCcc--HHHHH
Q psy16637 110 LKNVHLAP-------------QWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRA---GRIFVFEPPPG--IKANL 171 (264)
Q Consensus 110 L~N~hL~~-------------~~l~~L~~~l~~~~~h~~FRL~lt~~~~~~~P~~lL~~---s~kv~~e~p~~--lk~~l 171 (264)
+++++... ..+..|-..+......++.-++.+++....++..+++. -.+|.++.|.. .+..+
T Consensus 295 IDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il 374 (512)
T TIGR03689 295 FDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIF 374 (512)
T ss_pred EehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHH
Confidence 68876421 12333333333334445655666777767899999863 34677876652 34444
Q ss_pred HHHh
Q psy16637 172 LRTF 175 (264)
Q Consensus 172 ~~~~ 175 (264)
...+
T Consensus 375 ~~~l 378 (512)
T TIGR03689 375 SKYL 378 (512)
T ss_pred HHHh
Confidence 4433
No 147
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=43.20 E-value=1.4e+02 Score=29.55 Aligned_cols=83 Identities=13% Similarity=0.125 Sum_probs=54.6
Q ss_pred EEEEeCCCCCChhHHHHHHHHhcccceEEecCCCCCHHHHHHHHHHHHHcCCeEEeccccchhHHHHHHHHHhhccCCCC
Q psy16637 55 AVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAEGFNQADNVINVAVRSGKWVLLKNVHLAPQWLVQLEKKLHSLQPHA 134 (264)
Q Consensus 55 ii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~~~~~~~a~~~l~~a~~~G~WllL~N~hL~~~~l~~L~~~l~~~~~h~ 134 (264)
+|++-.||+.-+....+++...| ...|+.-.-..........+++++.|.-|+++|.++...+-..+.++..... -
T Consensus 372 Vil~G~pGSGKST~A~~l~~~~g--~~~vn~D~lg~~~~~~~~a~~~L~~G~sVVIDaTn~~~~~R~~~i~lAk~~g--v 447 (526)
T TIGR01663 372 VIAVGFPGAGKSHFCKKFFQPAG--YKHVNADTLGSTQNCLTACERALDQGKRCAIDNTNPDAASRAKFLQCARAAG--I 447 (526)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC--CeEECcHHHHHHHHHHHHHHHHHhCCCcEEEECCCCCHHHHHHHHHHHHHcC--C
Confidence 55556789998988888888765 3334321111123445667889999999999999999877666666554333 2
Q ss_pred CceEEEe
Q psy16637 135 NFRLFLT 141 (264)
Q Consensus 135 ~FRL~lt 141 (264)
.+|++..
T Consensus 448 ~v~~i~~ 454 (526)
T TIGR01663 448 PCRCFLF 454 (526)
T ss_pred eEEEEEe
Confidence 4555443
No 148
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=43.19 E-value=1.8e+02 Score=23.74 Aligned_cols=73 Identities=14% Similarity=0.242 Sum_probs=40.6
Q ss_pred CccEEEEeCCCCCChhHHH-HHHHHhcccceEEecCCCCCHHHHH-HHHHHHHHcCCeEEecc--ccchhHHHHHHHHHh
Q psy16637 52 NVPAVLCSVPGYDASGRVD-DLAAELGKQIASIAIGSAEGFNQAD-NVINVAVRSGKWVLLKN--VHLAPQWLVQLEKKL 127 (264)
Q Consensus 52 ~~Pii~i~s~g~DP~~~i~-~lA~~~~~~~~~islG~~~~~~~a~-~~l~~a~~~G~WllL~N--~hL~~~~l~~L~~~l 127 (264)
...+|++-....|.+.++. ++.++ ...+..+......+...|. ..++. ..|.||++=| +.+.+.|+..+.+.+
T Consensus 27 ~~eiiiVDd~S~d~t~~~~~~~~~~-~~~i~~~~~~~n~G~~~a~n~g~~~--a~gd~i~~lD~D~~~~~~~l~~l~~~~ 103 (224)
T cd06442 27 DYEIIVVDDNSPDGTAEIVRELAKE-YPRVRLIVRPGKRGLGSAYIEGFKA--ARGDVIVVMDADLSHPPEYIPELLEAQ 103 (224)
T ss_pred CeEEEEEeCCCCCChHHHHHHHHHh-CCceEEEecCCCCChHHHHHHHHHH--cCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3456666444457776543 34333 2334555555555533333 23333 4589998854 456688988876654
No 149
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=43.18 E-value=2.4e+02 Score=25.16 Aligned_cols=91 Identities=12% Similarity=0.158 Sum_probs=52.3
Q ss_pred CCccEEEEeCCCCCChhHHHHHHHHh---cc----cceEEec----C--CCCCHHHHHHHHHHHHHcCCeEEeccccchh
Q psy16637 51 GNVPAVLCSVPGYDASGRVDDLAAEL---GK----QIASIAI----G--SAEGFNQADNVINVAVRSGKWVLLKNVHLAP 117 (264)
Q Consensus 51 ~~~Pii~i~s~g~DP~~~i~~lA~~~---~~----~~~~isl----G--~~~~~~~a~~~l~~a~~~G~WllL~N~hL~~ 117 (264)
+..|++|.-+||+.-|.....+|+.. |. .+..++- + .|+......+.+++| .|+-|+|+++|.-.
T Consensus 57 ~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g~~~~~~~~~~~~a--~~gvL~iDEi~~L~ 134 (284)
T TIGR02880 57 PTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEILKRA--MGGVLFIDEAYYLY 134 (284)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcccchHHHHHHHHHc--cCcEEEEechhhhc
Confidence 45689999999998887766666543 21 3444431 1 112112344556654 57889999998431
Q ss_pred ------HHH----HHHHHHhhccCCCCCceEEEecCCC
Q psy16637 118 ------QWL----VQLEKKLHSLQPHANFRLFLTMEIN 145 (264)
Q Consensus 118 ------~~l----~~L~~~l~~~~~h~~FRL~lt~~~~ 145 (264)
.|- ..|.+.++ ..+.++|++++..+.
T Consensus 135 ~~~~~~~~~~~~~~~Ll~~le--~~~~~~~vI~a~~~~ 170 (284)
T TIGR02880 135 RPDNERDYGQEAIEILLQVME--NQRDDLVVILAGYKD 170 (284)
T ss_pred cCCCccchHHHHHHHHHHHHh--cCCCCEEEEEeCCcH
Confidence 232 23333333 335788988877653
No 150
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=41.17 E-value=1.5e+02 Score=23.43 Aligned_cols=57 Identities=26% Similarity=0.278 Sum_probs=39.4
Q ss_pred hHHHHHHHHhcccceE---------EecCCCCCHHHHHHHHHHHHHcCCeEEecccc-chhHHHHHH
Q psy16637 67 GRVDDLAAELGKQIAS---------IAIGSAEGFNQADNVINVAVRSGKWVLLKNVH-LAPQWLVQL 123 (264)
Q Consensus 67 ~~i~~lA~~~~~~~~~---------islG~~~~~~~a~~~l~~a~~~G~WllL~N~h-L~~~~l~~L 123 (264)
..+.+.-++.|..++. |-+.+.+..-.|+++|++++.++.=|.++-.. -++.|+..+
T Consensus 53 ~~v~~~L~~~gI~~ksi~~~~~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~p~~tP~WL~~l 119 (127)
T PRK10629 53 FYVYQHLDANGIHIKSITPENDSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDDNSQAMQWLTRL 119 (127)
T ss_pred HHHHHHHHHCCCCcceEEeeCCEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecCCCcchHHHHHh
Confidence 4566666666644333 44555544468999999999988666666666 579999986
No 151
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=41.01 E-value=1e+02 Score=25.07 Aligned_cols=74 Identities=18% Similarity=0.209 Sum_probs=43.7
Q ss_pred hHHHHHHHHhcccceEEecC---CCCC--HH--------HHHHHHHHHHHcCCeEEeccccchhH-H---HHHHHHHhhc
Q psy16637 67 GRVDDLAAELGKQIASIAIG---SAEG--FN--------QADNVINVAVRSGKWVLLKNVHLAPQ-W---LVQLEKKLHS 129 (264)
Q Consensus 67 ~~i~~lA~~~~~~~~~islG---~~~~--~~--------~a~~~l~~a~~~G~WllL~N~hL~~~-~---l~~L~~~l~~ 129 (264)
....++|++.|.+...+..| .... .+ ..+++.+.|.+.|-.++++|..-... - ++.+..+++.
T Consensus 74 ~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~l~~ 153 (213)
T PF01261_consen 74 KKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALENHPGPFSETPFSVEEIYRLLEE 153 (213)
T ss_dssp HHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSSSSSSEESSHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecccCccccchhhHHHHHHHHhh
Confidence 34666777788777777766 2211 11 22345567778899999999755431 1 2555566655
Q ss_pred cCCCCCceEEEe
Q psy16637 130 LQPHANFRLFLT 141 (264)
Q Consensus 130 ~~~h~~FRL~lt 141 (264)
+. +++|++.+-
T Consensus 154 ~~-~~~~~i~~D 164 (213)
T PF01261_consen 154 VD-SPNVGICFD 164 (213)
T ss_dssp HT-TTTEEEEEE
T ss_pred cC-CCcceEEEe
Confidence 44 455777653
No 152
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=40.87 E-value=88 Score=29.08 Aligned_cols=69 Identities=16% Similarity=0.224 Sum_probs=45.0
Q ss_pred HcCCe--EEeccccch-hHHHHHHHHHhhccCCCCCceEEEecCCCCCChHhHhhcceeeeecCCc--cHHHHHHH
Q psy16637 103 RSGKW--VLLKNVHLA-PQWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPP--GIKANLLR 173 (264)
Q Consensus 103 ~~G~W--llL~N~hL~-~~~l~~L~~~l~~~~~h~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p~--~lk~~l~~ 173 (264)
..|+| ++|+++|.. .+-.+.|-+.+++ +.++-.++++++....++..+..+|..+.+.+++ .++..+.+
T Consensus 138 ~~g~~rVviIDeAd~l~~~aanaLLk~LEE--pp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~ 211 (351)
T PRK09112 138 GDGNWRIVIIDPADDMNRNAANAILKTLEE--PPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSH 211 (351)
T ss_pred ccCCceEEEEEchhhcCHHHHHHHHHHHhc--CCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHH
Confidence 35666 456999876 4455566666664 4445555666655567778899999999998643 34554444
No 153
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=40.00 E-value=2.7e+02 Score=29.15 Aligned_cols=93 Identities=19% Similarity=0.227 Sum_probs=58.6
Q ss_pred cEEEEeCCCCCChhHHHHHHHHh---cccceEEecCCCCCHHHH---------------HHHHHHHHHc--CCeEEeccc
Q psy16637 54 PAVLCSVPGYDASGRVDDLAAEL---GKQIASIAIGSAEGFNQA---------------DNVINVAVRS--GKWVLLKNV 113 (264)
Q Consensus 54 Pii~i~s~g~DP~~~i~~lA~~~---~~~~~~islG~~~~~~~a---------------~~~l~~a~~~--G~WllL~N~ 113 (264)
+++|.-++|+..+.....+|+.. +..+..+.|+.-.+...+ ...+..+++. +.-|+|+++
T Consensus 597 ~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDei 676 (852)
T TIGR03346 597 SFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEV 676 (852)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEecc
Confidence 37788888999999888888865 235666665432110001 1234445443 346788999
Q ss_pred cch-hHHHHHHHHHhhccC------CCCCce---EEEecCCCC
Q psy16637 114 HLA-PQWLVQLEKKLHSLQ------PHANFR---LFLTMEINP 146 (264)
Q Consensus 114 hL~-~~~l~~L~~~l~~~~------~h~~FR---L~lt~~~~~ 146 (264)
+-+ +.....|-+.++.-. ..-+|| +++|++...
T Consensus 677 eka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~ 719 (852)
T TIGR03346 677 EKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGS 719 (852)
T ss_pred ccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcch
Confidence 877 566677777776432 235689 888887643
No 154
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=39.85 E-value=1.5e+02 Score=30.43 Aligned_cols=95 Identities=21% Similarity=0.290 Sum_probs=62.3
Q ss_pred CCcc---EEEEeCCCCCChhHHHHHHHHhcccceEEecCCCCCHH---------------HHHHHHHHHHH--cCCeEEe
Q psy16637 51 GNVP---AVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAEGFN---------------QADNVINVAVR--SGKWVLL 110 (264)
Q Consensus 51 ~~~P---ii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~~~~~~---------------~a~~~l~~a~~--~G~WllL 110 (264)
+..| ++|+-++|+.-|.....+|+..+.++..+.|++-.+.. .-...+.++++ ...-|+|
T Consensus 480 ~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~Vvll 559 (731)
T TIGR02639 480 PNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLL 559 (731)
T ss_pred CCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEE
Confidence 4455 57888999999999999999988777777764311100 00123445544 3467888
Q ss_pred ccccch-hHHHHHHHHHhhccC------CCCCce---EEEecCCC
Q psy16637 111 KNVHLA-PQWLVQLEKKLHSLQ------PHANFR---LFLTMEIN 145 (264)
Q Consensus 111 ~N~hL~-~~~l~~L~~~l~~~~------~h~~FR---L~lt~~~~ 145 (264)
++++.+ ++....|.+.++.-. ..-+|| +++|++..
T Consensus 560 DEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g 604 (731)
T TIGR02639 560 DEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAG 604 (731)
T ss_pred echhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcc
Confidence 999888 677777878776431 124566 77777654
No 155
>PF09778 Guanylate_cyc_2: Guanylylate cyclase; InterPro: IPR018616 Members of this family of proteins catalyse the conversion of guanosine triphosphate (GTP) to 3',5'-cyclic guanosine monophosphate (cGMP) and pyrophosphate.
Probab=39.78 E-value=1.3e+02 Score=25.99 Aligned_cols=95 Identities=14% Similarity=0.179 Sum_probs=61.8
Q ss_pred hhhHHhhcCCcHHHHHHHHHHHHhCc-ccccccCCCCChhHHhhhhcCCCccEEEEe-CCCCCChhHHHHHHHHhcccce
Q psy16637 4 LLFIQALRSDRVPAAAHIFVSAVFGE-AFMLSAERELDLPHIVEHELRGNVPAVLCS-VPGYDASGRVDDLAAELGKQIA 81 (264)
Q Consensus 4 lll~r~lrpDr~~~a~~~~v~~~lg~-~~~~~~~~~~~L~~~~~~~s~~~~Pii~i~-s~g~DP~~~i~~lA~~~~~~~~ 81 (264)
+++++.+..+.....+++...+ +|. +. .=+.||..++.+ - ..+..+.+ .-|+||....+.+-++.
T Consensus 18 ~MvL~~~~~~~~~~~~~~~c~~-~~~t~S----iWTIDLayLL~~-f--~v~~~f~T~TlGvnp~y~~~~FY~~~----- 84 (212)
T PF09778_consen 18 LMVLRYLGRNNFLANFEEICQE-EGFTTS----IWTIDLAYLLRR-F--GVRHSFYTVTLGVNPNYSVESFYKKN----- 84 (212)
T ss_pred HHHHHHcCccchHHHHHHHHHH-ccCCcc----eehhHHHHHHHH-c--CCCeeEecCccccCcCccccchHHHh-----
Confidence 4678888888888777777654 332 22 346888888863 2 34555554 55999998766666532
Q ss_pred EEecCCCCCHHHHHHHHHHHHHcCCeEEeccccchhH
Q psy16637 82 SIAIGSAEGFNQADNVINVAVRSGKWVLLKNVHLAPQ 118 (264)
Q Consensus 82 ~islG~~~~~~~a~~~l~~a~~~G~WllL~N~hL~~~ 118 (264)
+-. +...+.+.+++|.+.| +.++.+.++..
T Consensus 85 ---~~~--D~~RV~~lF~~A~~~g--i~V~~rsvs~~ 114 (212)
T PF09778_consen 85 ---FDE--DENRVNRLFQKAKAAG--INVEKRSVSIQ 114 (212)
T ss_pred ---hhh--HHHHHHHHHHHHHHcC--CceEEeeccHH
Confidence 111 1257788888888888 56677776643
No 156
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=39.68 E-value=1.3e+02 Score=30.15 Aligned_cols=114 Identities=15% Similarity=0.133 Sum_probs=64.9
Q ss_pred cEEEEeCCCCCChhHHHHHHHHhcc--cceEEecCCCCCH--H--HHHHHHHH----------HHHcCCeEEeccccch-
Q psy16637 54 PAVLCSVPGYDASGRVDDLAAELGK--QIASIAIGSAEGF--N--QADNVINV----------AVRSGKWVLLKNVHLA- 116 (264)
Q Consensus 54 Pii~i~s~g~DP~~~i~~lA~~~~~--~~~~islG~~~~~--~--~a~~~l~~----------a~~~G~WllL~N~hL~- 116 (264)
++++.-.+|.--+.....+++.... .+..+..+...+. . ..+..+.. +..+|+-|+|++++..
T Consensus 18 ~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl~ 97 (589)
T TIGR02031 18 GVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLLD 97 (589)
T ss_pred eEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhCC
Confidence 7888888888777777777775432 3555554322110 0 00011110 1245567788888766
Q ss_pred hHHHHHHHHHhhccC-----------CCCCceEEEecCCCC---CChHhHhhccee-eeecCCccH
Q psy16637 117 PQWLVQLEKKLHSLQ-----------PHANFRLFLTMEINP---KVPVNLLRAGRI-FVFEPPPGI 167 (264)
Q Consensus 117 ~~~l~~L~~~l~~~~-----------~h~~FRL~lt~~~~~---~~P~~lL~~s~k-v~~e~p~~l 167 (264)
+.....|-+.+++-. ...+||++.|+++.. .+|..++.+--- |....++..
T Consensus 98 ~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~~ 163 (589)
T TIGR02031 98 DGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVASQ 163 (589)
T ss_pred HHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCCCH
Confidence 445556655554211 236899999999875 688888876433 334433333
No 157
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=39.45 E-value=1.7e+02 Score=22.12 Aligned_cols=70 Identities=17% Similarity=0.158 Sum_probs=35.3
Q ss_pred CccEEEEeCCCCCChhHHHHHHHHhc-ccceEEecCCCCCHHHHH-HHHHHHHHcCCeEEecc--ccchhHHHHHH
Q psy16637 52 NVPAVLCSVPGYDASGRVDDLAAELG-KQIASIAIGSAEGFNQAD-NVINVAVRSGKWVLLKN--VHLAPQWLVQL 123 (264)
Q Consensus 52 ~~Pii~i~s~g~DP~~~i~~lA~~~~-~~~~~islG~~~~~~~a~-~~l~~a~~~G~WllL~N--~hL~~~~l~~L 123 (264)
..-++++-....|.+..+..-..... .....+......+...+. ..++.+ +|.|+++=+ ....+.|+..+
T Consensus 26 ~~~iivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~n~~~~~~--~~~~i~~~D~D~~~~~~~l~~~ 99 (180)
T cd06423 26 KLEVIVVDDGSTDDTLEILEELAALYIRRVLVVRDKENGGKAGALNAGLRHA--KGDIVVVLDADTILEPDALKRL 99 (180)
T ss_pred ceEEEEEeCCCccchHHHHHHHhccccceEEEEEecccCCchHHHHHHHHhc--CCCEEEEECCCCCcChHHHHHH
Confidence 34465555555555544333222211 223334343333332333 344443 899998854 45557888887
No 158
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=38.66 E-value=2.4e+02 Score=23.76 Aligned_cols=72 Identities=13% Similarity=0.041 Sum_probs=46.4
Q ss_pred CCccEEEEeCCCCCChhHHHHHHHHh---cccceEEecCCCCCHHHHHHHHHHHHHcCCeEEeccccchhHH-HHHHHHH
Q psy16637 51 GNVPAVLCSVPGYDASGRVDDLAAEL---GKQIASIAIGSAEGFNQADNVINVAVRSGKWVLLKNVHLAPQW-LVQLEKK 126 (264)
Q Consensus 51 ~~~Pii~i~s~g~DP~~~i~~lA~~~---~~~~~~islG~~~~~~~a~~~l~~a~~~G~WllL~N~hL~~~~-l~~L~~~ 126 (264)
...|+++.-++|+.-|.....++.+. +..+..++..+..+ .+ .-..++..|+++++|....+ ...|...
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~------~~-~~~~~~~~liiDdi~~l~~~~~~~L~~~ 113 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLL------AF-DFDPEAELYAVDDVERLDDAQQIALFNL 113 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHH------HH-hhcccCCEEEEeChhhcCchHHHHHHHH
Confidence 45689999999999998888887753 44566666543211 11 22346789999999866433 2344444
Q ss_pred hhc
Q psy16637 127 LHS 129 (264)
Q Consensus 127 l~~ 129 (264)
++.
T Consensus 114 ~~~ 116 (227)
T PRK08903 114 FNR 116 (227)
T ss_pred HHH
Confidence 443
No 159
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=38.56 E-value=80 Score=26.84 Aligned_cols=57 Identities=23% Similarity=0.200 Sum_probs=35.9
Q ss_pred cEEEEeCCCCC------ChhHHHHHHHHhcccceEEecCCCCCHHHHHHHHHHHHHcCCeEEeccc
Q psy16637 54 PAVLCSVPGYD------ASGRVDDLAAELGKQIASIAIGSAEGFNQADNVINVAVRSGKWVLLKNV 113 (264)
Q Consensus 54 Pii~i~s~g~D------P~~~i~~lA~~~~~~~~~islG~~~~~~~a~~~l~~a~~~G~WllL~N~ 113 (264)
=++++++.|.| |...-.++|++.|.++.+|.+|... +.+.+.+.+ +..|.-..-.|.
T Consensus 113 kvvILLTDG~n~~~~i~P~~aAa~lA~~~gV~iytIgiG~~d--~~~l~~iA~-~tgG~~F~A~d~ 175 (191)
T cd01455 113 AIVIVLSDANLERYGIQPKKLADALAREPNVNAFVIFIGSLS--DEADQLQRE-LPAGKAFVCMDT 175 (191)
T ss_pred cEEEEEeCCCcCCCCCChHHHHHHHHHhCCCEEEEEEecCCC--HHHHHHHHh-CCCCcEEEeCCH
Confidence 47777888765 4333468888899999999999853 233333322 244666555554
No 160
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=35.93 E-value=33 Score=26.92 Aligned_cols=40 Identities=15% Similarity=0.310 Sum_probs=23.0
Q ss_pred hhHHhhhhcCCCccEEEEeCCCCCChhHHHHHHHHhcccceEEec
Q psy16637 41 LPHIVEHELRGNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAI 85 (264)
Q Consensus 41 L~~~~~~~s~~~~Pii~i~s~g~DP~~~i~~lA~~~~~~~~~isl 85 (264)
+++++ +...|+|++ +.|.+|...+.++|++.+..+..-++
T Consensus 74 l~~l~----~~~~P~iIv-t~~~~~p~~l~e~a~~~~ipll~t~~ 113 (127)
T PF02603_consen 74 LEKLF----SYNPPCIIV-TRGLEPPPELIELAEKYNIPLLRTPL 113 (127)
T ss_dssp HHHHC----TTT-S-EEE-ETTT---HHHHHHHHHCT--EEEESS
T ss_pred HHHHh----CCCCCEEEE-ECcCCCCHHHHHHHHHhCCcEEEcCC
Confidence 45554 356788665 55779999999999999876655444
No 161
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=35.60 E-value=1.8e+02 Score=24.07 Aligned_cols=68 Identities=19% Similarity=0.159 Sum_probs=38.4
Q ss_pred EEEEeCCCCCChhHHHHHHHHhcccceEEecCCCCCHHHHH-HHHHHHHH-cCCeEEecc--ccchhHHHHHHH
Q psy16637 55 AVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAEGFNQAD-NVINVAVR-SGKWVLLKN--VHLAPQWLVQLE 124 (264)
Q Consensus 55 ii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~~~~~~~a~-~~l~~a~~-~G~WllL~N--~hL~~~~l~~L~ 124 (264)
-|++...+.|++....... ....+..+......+...|. ..++.|.. ++.||++=| ....+.|+..+.
T Consensus 26 ~iivvDn~s~~~~~~~~~~--~~~~i~~i~~~~n~G~~~a~N~g~~~a~~~~~d~v~~lD~D~~~~~~~l~~l~ 97 (237)
T cd02526 26 KVVVVDNSSGNDIELRLRL--NSEKIELIHLGENLGIAKALNIGIKAALENGADYVLLFDQDSVPPPDMVEKLL 97 (237)
T ss_pred EEEEEeCCCCccHHHHhhc--cCCcEEEEECCCceehHHhhhHHHHHHHhCCCCEEEEECCCCCcCHhHHHHHH
Confidence 3555666777665433211 23345556554444433343 34555543 569999955 455688999884
No 162
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=35.08 E-value=1.1e+02 Score=28.37 Aligned_cols=72 Identities=19% Similarity=0.125 Sum_probs=47.5
Q ss_pred CCCChhHHhhhhcCCCccEEEEeCCCC---CChhHHHHHHHHh--cccceEEecCCCCCH------HHHHHHHHHHHHcC
Q psy16637 37 RELDLPHIVEHELRGNVPAVLCSVPGY---DASGRVDDLAAEL--GKQIASIAIGSAEGF------NQADNVINVAVRSG 105 (264)
Q Consensus 37 ~~~~L~~~~~~~s~~~~Pii~i~s~g~---DP~~~i~~lA~~~--~~~~~~islG~~~~~------~~a~~~l~~a~~~G 105 (264)
..+|++.+.. ..|...|+++-..+. ++...+....... +.++..+|.|..+.. ...+.++++|..+|
T Consensus 76 ~~LDv~~~~g--vAP~a~i~~~~~~~~~~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~G 153 (361)
T cd04056 76 ASLDVEYAGA--IAPGANITLYFAPGTVTNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQG 153 (361)
T ss_pred hhhhHHHHHh--ccCCCeEEEEEECCcCccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCC
Confidence 5577776653 677888888876653 3333333333332 567788888887642 34567889999999
Q ss_pred CeEEe
Q psy16637 106 KWVLL 110 (264)
Q Consensus 106 ~WllL 110 (264)
-=|+.
T Consensus 154 itvva 158 (361)
T cd04056 154 ITVLA 158 (361)
T ss_pred eEEEE
Confidence 88877
No 163
>PRK00074 guaA GMP synthase; Reviewed
Probab=34.84 E-value=2.3e+02 Score=27.70 Aligned_cols=90 Identities=19% Similarity=0.243 Sum_probs=50.4
Q ss_pred hcCCcHH-----HHHHHHHHHHhCcccccccCCCCChhHHhhh------hcCCCccEEEEeCCCCCChhHHHHHHHHhcc
Q psy16637 10 LRSDRVP-----AAAHIFVSAVFGEAFMLSAERELDLPHIVEH------ELRGNVPAVLCSVPGYDASGRVDDLAAELGK 78 (264)
Q Consensus 10 lrpDr~~-----~a~~~~v~~~lg~~~~~~~~~~~~L~~~~~~------~s~~~~Pii~i~s~g~DP~~~i~~lA~~~~~ 78 (264)
++||... ..+++|+..+-|.+ +.+++++.+++ +.-....+++..|.|.|-+-.+.-+.+..|.
T Consensus 168 FHPE~~~t~~G~~il~nFl~~i~~~~------~~~~~~~~~~~~~~~l~~~v~~~~vlva~SGGvDS~vll~ll~~~lg~ 241 (511)
T PRK00074 168 FHPEVTHTPQGKKLLENFVFDICGCK------GDWTMENFIEEAIEEIREQVGDKKVILGLSGGVDSSVAAVLLHKAIGD 241 (511)
T ss_pred CCCCcCCchhHHHHHHHHHHHhcCCC------CCccHHHHHHHHHHHHHHhcCCCcEEEEeCCCccHHHHHHHHHHHhCC
Confidence 5777653 46788887776754 23333222210 2223468999999999976655554455576
Q ss_pred cceEEecCCCCC-HHHHHHHHHHH-HHcC
Q psy16637 79 QIASIAIGSAEG-FNQADNVINVA-VRSG 105 (264)
Q Consensus 79 ~~~~islG~~~~-~~~a~~~l~~a-~~~G 105 (264)
++..+.+-.+.. ....+.+.+.+ -+-|
T Consensus 242 ~v~av~vd~g~~~~~e~~~~~~~~a~~lg 270 (511)
T PRK00074 242 QLTCVFVDHGLLRKNEAEQVMEMFREHFG 270 (511)
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 776665554421 12344444433 3344
No 164
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=34.40 E-value=29 Score=31.08 Aligned_cols=36 Identities=17% Similarity=0.256 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCCCcccCCCCcc
Q psy16637 223 ESDLRVACDTLDTWIDSTAMGKRDYAMYHSAGPSSM 258 (264)
Q Consensus 223 ~~Dl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (264)
..++..|.+.++.+++.....+.+++-+|||||-..
T Consensus 191 ~~sl~~a~~~~~~i~~aa~~v~~dii~l~hGGPI~~ 226 (268)
T PF09370_consen 191 ALSLEEAAERIQEIFDAARAVNPDIIVLCHGGPIAT 226 (268)
T ss_dssp S--HHHHHHHHHHHHHHHHCC-TT-EEEEECTTB-S
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCC
Confidence 357889999999999998888899999999999653
No 165
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=34.36 E-value=3.8e+02 Score=24.80 Aligned_cols=75 Identities=17% Similarity=0.242 Sum_probs=41.2
Q ss_pred cEEEEeCCCCCChhHHHH-HHHHhc--ccceEEecCC---C-CCHHHH-HHHHHHHHHc---CCeEEecc--ccchhHHH
Q psy16637 54 PAVLCSVPGYDASGRVDD-LAAELG--KQIASIAIGS---A-EGFNQA-DNVINVAVRS---GKWVLLKN--VHLAPQWL 120 (264)
Q Consensus 54 Pii~i~s~g~DP~~~i~~-lA~~~~--~~~~~islG~---~-~~~~~a-~~~l~~a~~~---G~WllL~N--~hL~~~~l 120 (264)
-+|++-....|.|.++.+ ++++.. ..++.+.-.. + .+-..| ...++.|.+. |.||++-| +.+.++|+
T Consensus 72 eIIVVDd~StD~T~~i~~~~~~~~~~~~~i~vi~~~~~~~g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~~~p~~l 151 (384)
T TIGR03469 72 HVILVDDHSTDGTADIARAAARAYGRGDRLTVVSGQPLPPGWSGKLWAVSQGIAAARTLAPPADYLLLTDADIAHGPDNL 151 (384)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHhcCCCCcEEEecCCCCCCCCcchHHHHHHHHHHHhccCCCCCEEEEECCCCCCChhHH
Confidence 466666656788866544 444332 1355554211 1 121122 2334444322 89999955 55668899
Q ss_pred HHHHHHhh
Q psy16637 121 VQLEKKLH 128 (264)
Q Consensus 121 ~~L~~~l~ 128 (264)
.++...++
T Consensus 152 ~~lv~~~~ 159 (384)
T TIGR03469 152 ARLVARAR 159 (384)
T ss_pred HHHHHHHH
Confidence 98877664
No 166
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=33.93 E-value=4.5e+02 Score=25.55 Aligned_cols=114 Identities=16% Similarity=0.108 Sum_probs=69.8
Q ss_pred CCCccEEEEeCCCCCChhHHHHHHHHhcc-----cceEEecCC--------------CCCHH----HHHHHHHHHHH---
Q psy16637 50 RGNVPAVLCSVPGYDASGRVDDLAAELGK-----QIASIAIGS--------------AEGFN----QADNVINVAVR--- 103 (264)
Q Consensus 50 ~~~~Pii~i~s~g~DP~~~i~~lA~~~~~-----~~~~islG~--------------~~~~~----~a~~~l~~a~~--- 103 (264)
.....+++.-+||+.-|.....+|...+. .+..+...+ +.+.. ...+.+++|.+
T Consensus 192 ~~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~ 271 (459)
T PRK11331 192 TIKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPE 271 (459)
T ss_pred hcCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhccc
Confidence 34568889999999999999999987632 121222211 00111 22345566764
Q ss_pred cCCeEEeccccchh--HHHHHHHHHhh--------------------ccCCCCCceEEEecCCCC----CChHhHhhcce
Q psy16637 104 SGKWVLLKNVHLAP--QWLVQLEKKLH--------------------SLQPHANFRLFLTMEINP----KVPVNLLRAGR 157 (264)
Q Consensus 104 ~G~WllL~N~hL~~--~~l~~L~~~l~--------------------~~~~h~~FRL~lt~~~~~----~~P~~lL~~s~ 157 (264)
++.||+++.+..+. .....+-..++ .....+||+++-|++..+ .+-..+.++-.
T Consensus 272 ~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrRRF~ 351 (459)
T PRK11331 272 KKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRFS 351 (459)
T ss_pred CCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccchhhccHHHHhhhh
Confidence 46899998887773 23334333332 134679999999998876 35555666665
Q ss_pred eeeecC
Q psy16637 158 IFVFEP 163 (264)
Q Consensus 158 kv~~e~ 163 (264)
-+-.++
T Consensus 352 fi~i~p 357 (459)
T PRK11331 352 FIDIEP 357 (459)
T ss_pred eEEecC
Confidence 555554
No 167
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=33.70 E-value=1.4e+02 Score=31.27 Aligned_cols=113 Identities=17% Similarity=0.168 Sum_probs=68.9
Q ss_pred cEEEEeCCCCCChhHHHHHHHHhc----------ccceEEecCC---C-----CCHHHHHHHHHHHHHcC--CeEEeccc
Q psy16637 54 PAVLCSVPGYDASGRVDDLAAELG----------KQIASIAIGS---A-----EGFNQADNVINVAVRSG--KWVLLKNV 113 (264)
Q Consensus 54 Pii~i~s~g~DP~~~i~~lA~~~~----------~~~~~islG~---~-----~~~~~a~~~l~~a~~~G--~WllL~N~ 113 (264)
-++++-.||+.-|..++.+|+... .++..+.+|. + +-.+...++++.+.+.| .-|+++.+
T Consensus 210 n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEi 289 (852)
T TIGR03345 210 NPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEA 289 (852)
T ss_pred ceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeCh
Confidence 356889999999999999998752 2344455553 1 11135566777776543 45567888
Q ss_pred cchhH-----HHHHHHHHhhccCCCCCceEEEecCCC---C--CChHhHhhcceeeeecCCcc
Q psy16637 114 HLAPQ-----WLVQLEKKLHSLQPHANFRLFLTMEIN---P--KVPVNLLRAGRIFVFEPPPG 166 (264)
Q Consensus 114 hL~~~-----~l~~L~~~l~~~~~h~~FRL~lt~~~~---~--~~P~~lL~~s~kv~~e~p~~ 166 (264)
|.-.. --.....+|...-..-..+++-++.+. + .....|..++.+|.+++|+.
T Consensus 290 h~l~~~g~~~~~~d~~n~Lkp~l~~G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~ 352 (852)
T TIGR03345 290 HTLIGAGGQAGQGDAANLLKPALARGELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDE 352 (852)
T ss_pred HHhccCCCccccccHHHHhhHHhhCCCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCH
Confidence 86521 001111222221124567888877663 2 35678999999998887653
No 168
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=33.61 E-value=2.7e+02 Score=22.93 Aligned_cols=71 Identities=14% Similarity=0.081 Sum_probs=37.8
Q ss_pred cEEEEeCCCCCChhHHHHHHHHhcccceEEecCCCCCHHHHH-HHHHHHHHcCCeEEecc--ccchhHHHHHHHHHhh
Q psy16637 54 PAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAEGFNQAD-NVINVAVRSGKWVLLKN--VHLAPQWLVQLEKKLH 128 (264)
Q Consensus 54 Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~~~~~~~a~-~~l~~a~~~G~WllL~N--~hL~~~~l~~L~~~l~ 128 (264)
-++++.....|++..+...+.+ ...+..+.-+ ..+...|. ..++.| +|.||++=| +.+.+.|+..+.+.+.
T Consensus 30 eiivvdd~s~d~~~~~l~~~~~-~~~~~v~~~~-~~g~~~a~n~g~~~a--~~d~v~~lD~D~~~~~~~l~~l~~~~~ 103 (235)
T cd06434 30 EIIVVTDGDDEPYLSILSQTVK-YGGIFVITVP-HPGKRRALAEGIRHV--TTDIVVLLDSDTVWPPNALPEMLKPFE 103 (235)
T ss_pred EEEEEeCCCChHHHHHHHhhcc-CCcEEEEecC-CCChHHHHHHHHHHh--CCCEEEEECCCceeChhHHHHHHHhcc
Confidence 4666666566666654422222 2223333322 22322222 334433 899999954 5666889888877663
No 169
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=33.25 E-value=4.3e+02 Score=25.04 Aligned_cols=72 Identities=15% Similarity=0.200 Sum_probs=41.2
Q ss_pred CccEEEEeCCCCCChhH-HHHHHHHhcccceEEecCCCCCHHHHHHHHHHHH--HcCCeEEeccc--cchhHHHHHHHHH
Q psy16637 52 NVPAVLCSVPGYDASGR-VDDLAAELGKQIASIAIGSAEGFNQADNVINVAV--RSGKWVLLKNV--HLAPQWLVQLEKK 126 (264)
Q Consensus 52 ~~Pii~i~s~g~DP~~~-i~~lA~~~~~~~~~islG~~~~~~~a~~~l~~a~--~~G~WllL~N~--hL~~~~l~~L~~~ 126 (264)
..-++++.....|.+.+ +.+++++. ..++.+..+..++... .++.++ .+|.++++=++ -+.++++.++.+.
T Consensus 104 ~~eIivVdDgs~D~t~~~~~~~~~~~-~~v~vv~~~~n~Gka~---AlN~gl~~a~~d~iv~lDAD~~~~~d~L~~lv~~ 179 (444)
T PRK14583 104 NIEVIAINDGSSDDTAQVLDALLAED-PRLRVIHLAHNQGKAI---ALRMGAAAARSEYLVCIDGDALLDKNAVPYLVAP 179 (444)
T ss_pred CeEEEEEECCCCccHHHHHHHHHHhC-CCEEEEEeCCCCCHHH---HHHHHHHhCCCCEEEEECCCCCcCHHHHHHHHHH
Confidence 33465655555666654 44444433 3466666666555222 333333 36999999654 4557888887665
Q ss_pred h
Q psy16637 127 L 127 (264)
Q Consensus 127 l 127 (264)
+
T Consensus 180 ~ 180 (444)
T PRK14583 180 L 180 (444)
T ss_pred H
Confidence 4
No 170
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=32.76 E-value=4.5e+02 Score=26.04 Aligned_cols=94 Identities=11% Similarity=0.185 Sum_probs=55.7
Q ss_pred cCCCccEEEEeCCCCCChhHHHHHHHH-----------hcccceEEecCCCCCHHHHHHH--------------------
Q psy16637 49 LRGNVPAVLCSVPGYDASGRVDDLAAE-----------LGKQIASIAIGSAEGFNQADNV-------------------- 97 (264)
Q Consensus 49 s~~~~Pii~i~s~g~DP~~~i~~lA~~-----------~~~~~~~islG~~~~~~~a~~~-------------------- 97 (264)
.....|+++.-.+|+.-...-..+... .+..+..|.-+.-.+ +..+..
T Consensus 239 A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e-~lleseLFG~~~gaftga~~~~~~Gl 317 (538)
T PRK15424 239 ARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAE-SLLEAELFGYEEGAFTGSRRGGRAGL 317 (538)
T ss_pred hCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCCh-hhHHHHhcCCccccccCccccccCCc
Confidence 445679999999998766544333322 234566665544322 222222
Q ss_pred HHHHHHcCCeEEeccccchh-HHHHHHHHHhhccC---------CCCCceEEEecCCC
Q psy16637 98 INVAVRSGKWVLLKNVHLAP-QWLVQLEKKLHSLQ---------PHANFRLFLTMEIN 145 (264)
Q Consensus 98 l~~a~~~G~WllL~N~hL~~-~~l~~L~~~l~~~~---------~h~~FRL~lt~~~~ 145 (264)
++ ..+|+-|+|++++..+ ..-..|-..+++-+ ...++|+..+++.+
T Consensus 318 ~e--~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaat~~~ 373 (538)
T PRK15424 318 FE--IAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCD 373 (538)
T ss_pred hh--ccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEecCCCceeccceEEEEecCCC
Confidence 22 3468899999998664 44456777665421 24578998887543
No 171
>cd04498 hPOT1_OB2 hPOT1_OB2: A subfamily of OB folds similar to the second OB fold (OB2) of human protection of telomeres 1 protein (hPOT1). POT1 proteins bind to the single-stranded (ss) 3-prime ends of the telomere. hPOT1 binds specifically to ss telomeric DNA repeats ending with the sequence GGTTAG. The hPOT1 monomer consists of two closely connected OB folds (OB1-OB2) which cooperate to bind telomeric ssDNA. OB1 makes more extensive contact with the ssDNA than OB2. OB2 protects the 3' end of the ssDNA. hPOT1 is implicated in telomere length regulation.
Probab=31.52 E-value=24 Score=27.83 Aligned_cols=20 Identities=25% Similarity=0.506 Sum_probs=16.4
Q ss_pred HHHHHHHcCCeEEeccccchh
Q psy16637 97 VINVAVRSGKWVLLKNVHLAP 117 (264)
Q Consensus 97 ~l~~a~~~G~WllL~N~hL~~ 117 (264)
.+++ ++.|.||.|+|+|...
T Consensus 73 ~ar~-lK~GdfV~L~NVhiK~ 92 (123)
T cd04498 73 LAKS-LKPGDFVRIYNVHAKS 92 (123)
T ss_pred HHhh-CCCCCEEEEEEEEEEe
Confidence 4455 9999999999999653
No 172
>PRK10073 putative glycosyl transferase; Provisional
Probab=31.31 E-value=4e+02 Score=24.15 Aligned_cols=72 Identities=17% Similarity=0.209 Sum_probs=40.6
Q ss_pred ccEEEEeCCCCCChhHHHH-HHHHhcccceEEecCCCCCHHHHHH-HHHHHHHcCCeEEeccc--cchhHHHHHHHHHhh
Q psy16637 53 VPAVLCSVPGYDASGRVDD-LAAELGKQIASIAIGSAEGFNQADN-VINVAVRSGKWVLLKNV--HLAPQWLVQLEKKLH 128 (264)
Q Consensus 53 ~Pii~i~s~g~DP~~~i~~-lA~~~~~~~~~islG~~~~~~~a~~-~l~~a~~~G~WllL~N~--hL~~~~l~~L~~~l~ 128 (264)
.=+|++-....|.+..+.+ ++++ ...+..+.- ...|...|.. .++ ..+|.||++-+. .+.+.++..+.+.++
T Consensus 36 ~EIIiVdDgStD~t~~i~~~~~~~-~~~i~vi~~-~n~G~~~arN~gl~--~a~g~yi~flD~DD~~~p~~l~~l~~~~~ 111 (328)
T PRK10073 36 LEIIIVNDGSTDNSVEIAKHYAEN-YPHVRLLHQ-ANAGVSVARNTGLA--VATGKYVAFPDADDVVYPTMYETLMTMAL 111 (328)
T ss_pred eEEEEEeCCCCccHHHHHHHHHhh-CCCEEEEEC-CCCChHHHHHHHHH--hCCCCEEEEECCCCccChhHHHHHHHHHH
Confidence 3466665555676665443 4443 234555543 2344444432 233 348999999554 556778877766554
No 173
>PRK10865 protein disaggregation chaperone; Provisional
Probab=31.25 E-value=4.5e+02 Score=27.65 Aligned_cols=93 Identities=18% Similarity=0.215 Sum_probs=56.9
Q ss_pred ccEEEEeCCCCCChhHHHHHHHHh---cccceEEecCCCCCHHHH---------------HHHHHHHHH--cCCeEEecc
Q psy16637 53 VPAVLCSVPGYDASGRVDDLAAEL---GKQIASIAIGSAEGFNQA---------------DNVINVAVR--SGKWVLLKN 112 (264)
Q Consensus 53 ~Pii~i~s~g~DP~~~i~~lA~~~---~~~~~~islG~~~~~~~a---------------~~~l~~a~~--~G~WllL~N 112 (264)
.+++|+-++|+.-+.....+|+.. +..+..+.+..-.+...+ ...+..+.+ .+.-|+|++
T Consensus 599 ~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDE 678 (857)
T PRK10865 599 GSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDE 678 (857)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEee
Confidence 357888899999999888888764 234555555332110001 122444443 357899999
Q ss_pred ccch-hHHHHHHHHHhhccC------CCCCce---EEEecCCC
Q psy16637 113 VHLA-PQWLVQLEKKLHSLQ------PHANFR---LFLTMEIN 145 (264)
Q Consensus 113 ~hL~-~~~l~~L~~~l~~~~------~h~~FR---L~lt~~~~ 145 (264)
++.+ +.....|-+.++.-. ..-+|| +.+|++..
T Consensus 679 ieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g 721 (857)
T PRK10865 679 VEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLG 721 (857)
T ss_pred hhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcc
Confidence 9877 455556777775421 235788 78888764
No 174
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=30.77 E-value=3.6e+02 Score=26.99 Aligned_cols=96 Identities=14% Similarity=0.182 Sum_probs=56.5
Q ss_pred cCCCccEEEEeCCCCCChhHHHHHHHH---hcccceEEecCCCCCHHHHHH-HHH-------------HHHHcCCeEEec
Q psy16637 49 LRGNVPAVLCSVPGYDASGRVDDLAAE---LGKQIASIAIGSAEGFNQADN-VIN-------------VAVRSGKWVLLK 111 (264)
Q Consensus 49 s~~~~Pii~i~s~g~DP~~~i~~lA~~---~~~~~~~islG~~~~~~~a~~-~l~-------------~a~~~G~WllL~ 111 (264)
.....|+++.-.+|+.-+.....+... .+..+..|.-+.-.. +..+. ++- -...+|+-|+|+
T Consensus 345 a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~-~~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ld 423 (638)
T PRK11388 345 AKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD-EALAEEFLGSDRTDSENGRLSKFELAHGGTLFLE 423 (638)
T ss_pred hCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh-HHHHHHhcCCCCcCccCCCCCceeECCCCEEEEc
Confidence 345679999988888766554444432 234566666544322 12221 111 113568899999
Q ss_pred cccchhHHHH-HHHHHhhccC---------CCCCceEEEecCCC
Q psy16637 112 NVHLAPQWLV-QLEKKLHSLQ---------PHANFRLFLTMEIN 145 (264)
Q Consensus 112 N~hL~~~~l~-~L~~~l~~~~---------~h~~FRL~lt~~~~ 145 (264)
+++..+..+. .|-+.+++-. ..-++|+..++...
T Consensus 424 ei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~ 467 (638)
T PRK11388 424 KVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTAD 467 (638)
T ss_pred ChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCC
Confidence 9987755444 6777765421 12378998887653
No 175
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=30.36 E-value=2.4e+02 Score=21.37 Aligned_cols=72 Identities=26% Similarity=0.384 Sum_probs=44.6
Q ss_pred EEEEeCCCCCChhHHHHHHHHhcccceEEec--------C-CCCC-------HH----HHHHHHHHHHHcCCeEEecccc
Q psy16637 55 AVLCSVPGYDASGRVDDLAAELGKQIASIAI--------G-SAEG-------FN----QADNVINVAVRSGKWVLLKNVH 114 (264)
Q Consensus 55 ii~i~s~g~DP~~~i~~lA~~~~~~~~~isl--------G-~~~~-------~~----~a~~~l~~a~~~G~WllL~N~h 114 (264)
++++-.||+.-|..+..++++.+. ..|+. + .... .+ .....++.++++|.-++++|+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~--~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~vvd~~~ 79 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGA--VVISQDEIRRRLAGEDPPSPSDYIEAEERAYQILNAAIRKALRNGNSVVVDNTN 79 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTE--EEEEHHHHHHHHCCSSSGCCCCCHHHHHHHHHHHHHHHHHHHHTT-EEEEESS-
T ss_pred EEEECCCCCCHHHHHHHHHHHCCC--EEEeHHHHHHHHcccccccchhHHHHHHHHHHHHHHHHHHHHHcCCCceeccCc
Confidence 567788999999999999988762 12221 1 1110 01 1234567788999999999998
Q ss_pred chhHHHHHHHHHhh
Q psy16637 115 LAPQWLVQLEKKLH 128 (264)
Q Consensus 115 L~~~~l~~L~~~l~ 128 (264)
+.......+.+.+.
T Consensus 80 ~~~~~r~~~~~~~~ 93 (143)
T PF13671_consen 80 LSREERARLRELAR 93 (143)
T ss_dssp -SHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 88655555555543
No 176
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=30.23 E-value=1.7e+02 Score=22.93 Aligned_cols=37 Identities=24% Similarity=0.294 Sum_probs=22.8
Q ss_pred CccEEEEeCCCC--CChhHHHHHHHHhc--ccceEEecCCC
Q psy16637 52 NVPAVLCSVPGY--DASGRVDDLAAELG--KQIASIAIGSA 88 (264)
Q Consensus 52 ~~Pii~i~s~g~--DP~~~i~~lA~~~~--~~~~~islG~~ 88 (264)
....|++++.|. ++...+.+.+++.. ..+..+++|..
T Consensus 96 ~~~~IilltDG~~~~~~~~i~~~v~~~~~~~~i~~~~~g~~ 136 (155)
T PF13768_consen 96 CVRAIILLTDGQPVSGEEEILDLVRRARGHIRIFTFGIGSD 136 (155)
T ss_pred CccEEEEEEeccCCCCHHHHHHHHHhcCCCceEEEEEECCh
Confidence 455666666665 35567777776543 34566777764
No 177
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=29.86 E-value=1.8e+02 Score=29.78 Aligned_cols=107 Identities=16% Similarity=0.190 Sum_probs=65.3
Q ss_pred EEEEeCCCCCChhHHHHHHHHh----------cccceEEecCCC--------CCHHHHHHHHHHHHHcC-CeEEeccccc
Q psy16637 55 AVLCSVPGYDASGRVDDLAAEL----------GKQIASIAIGSA--------EGFNQADNVINVAVRSG-KWVLLKNVHL 115 (264)
Q Consensus 55 ii~i~s~g~DP~~~i~~lA~~~----------~~~~~~islG~~--------~~~~~a~~~l~~a~~~G-~WllL~N~hL 115 (264)
+|++-+||+.-|..++.+|++. +..+..++++.- +-.+...++++.+.+.+ .-|+++++|.
T Consensus 206 ~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~ 285 (731)
T TIGR02639 206 PLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHT 285 (731)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHH
Confidence 5678899999999999999875 334445544321 11134566777776654 4556699983
Q ss_pred hh----------HHHHHHHHHhhccCCCCCceEEEecCCC---C--CChHhHhhcceeeeecCCc
Q psy16637 116 AP----------QWLVQLEKKLHSLQPHANFRLFLTMEIN---P--KVPVNLLRAGRIFVFEPPP 165 (264)
Q Consensus 116 ~~----------~~l~~L~~~l~~~~~h~~FRL~lt~~~~---~--~~P~~lL~~s~kv~~e~p~ 165 (264)
-. .--+-|...++ .-+.+++-++++. + .....+..+..+|.+++|+
T Consensus 286 l~~~g~~~~~~~~~~~~L~~~l~----~g~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~ 346 (731)
T TIGR02639 286 IVGAGATSGGSMDASNLLKPALS----SGKLRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPS 346 (731)
T ss_pred HhccCCCCCccHHHHHHHHHHHh----CCCeEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCC
Confidence 31 01112222222 3456777766552 1 3567888888888888764
No 178
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=29.42 E-value=82 Score=24.82 Aligned_cols=50 Identities=20% Similarity=0.363 Sum_probs=33.6
Q ss_pred EEeCCCCCChhHHHHHHHHhcccceEEecCCCCC--H---HHHHHHHHHHHHcCCeE
Q psy16637 57 LCSVPGYDASGRVDDLAAELGKQIASIAIGSAEG--F---NQADNVINVAVRSGKWV 108 (264)
Q Consensus 57 ~i~s~g~DP~~~i~~lA~~~~~~~~~islG~~~~--~---~~a~~~l~~a~~~G~Wl 108 (264)
++-+||+.-+..-..+|++.| +..||+|.-=. . ...-..+++++++|..|
T Consensus 1 i~G~PgsGK~t~~~~la~~~~--~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~v 55 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG--LVHISVGDLLREEIKSDSELGKQIQEYLDNGELV 55 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT--SEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS-
T ss_pred CcCCCCCChHHHHHHHHHhcC--cceechHHHHHHHHhhhhHHHHHHHHHHHhhccc
Confidence 356889999999999999886 77888876200 0 11224567778888744
No 179
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=29.37 E-value=53 Score=37.04 Aligned_cols=102 Identities=12% Similarity=0.080 Sum_probs=65.0
Q ss_pred CChHhHhhcceeeeecCCccHHHHHHHHhcCCChhhhccChhHHHHHH--HHHHHHH--HHHhhhhhccccCCccccccC
Q psy16637 147 KVPVNLLRAGRIFVFEPPPGIKANLLRTFSTVPATRMMKAPNERARLY--FLLAWFH--AIVQERLRYVPLGWSKFYEFN 222 (264)
Q Consensus 147 ~~P~~lL~~s~kv~~e~p~~lk~~l~~~~~~~~~~~~~~~~~~~~~l~--~~L~~~H--ail~eR~~y~p~Gws~~Y~f~ 222 (264)
.+|.-++.+.+-|.+..|.+ ..+.++|+.+-.... ..-++++++. ++-+-.| -...+|.+++-+ ..|-|+
T Consensus 1628 ~~~eRf~r~~v~vf~~ype~--~SL~~Iyea~l~~s~-l~~~ef~~~se~~~~aSv~ly~~~k~~~k~~lq---~~y~y~ 1701 (3164)
T COG5245 1628 KYYERFIRKPVFVFCCYPEL--ASLRNIYEAVLMGSY-LCFDEFNRLSEETMSASVELYLSSKDKTKFFLQ---MNYGYK 1701 (3164)
T ss_pred ccHHHHhcCceEEEecCcch--hhHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc---cccccC
Confidence 69999999999999998876 345555543211110 1122444433 3333334 444555566556 489999
Q ss_pred HHHHHHHHHHHHHHHhhh--cCCCCCCCCcccCC
Q psy16637 223 ESDLRVACDTLDTWIDST--AMGKRDYAMYHSAG 254 (264)
Q Consensus 223 ~~Dl~~~~~~l~~~~~~~--~~~~~~~~~~~~~~ 254 (264)
..||...+.-+.+|.+.- ...+..|+.|-|+|
T Consensus 1702 pReLtR~lr~i~~yaeT~~~t~~~slI~~wy~ea 1735 (3164)
T COG5245 1702 PRELTRSLRAIFGYAETRIDTPDVSLIIDWYCEA 1735 (3164)
T ss_pred hHHHHHHHHHHHhHHhcCCCCCcHHHHHHHHHHH
Confidence 999999999999988774 23345666666665
No 180
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=29.27 E-value=3.4e+02 Score=25.86 Aligned_cols=93 Identities=16% Similarity=0.113 Sum_probs=59.1
Q ss_pred CccEEEEeCCCCCChhHHHHHHHHhcccceEEecCCCCCH----HHHHHHHHHH---------HHcCCeEEeccccchhH
Q psy16637 52 NVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAEGF----NQADNVINVA---------VRSGKWVLLKNVHLAPQ 118 (264)
Q Consensus 52 ~~Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~~~~~----~~a~~~l~~a---------~~~G~WllL~N~hL~~~ 118 (264)
..+++++-++|+.-|.....+|+..+..+..+....-.+. ..++..+..+ ...++-|+|+.+|....
T Consensus 108 ~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~ 187 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIAR 187 (412)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhcc
Confidence 3468999999999999999999988776665554321100 1123333221 23678899999987731
Q ss_pred ---------------HHHHHHHHhhc-----------cCCCCCceEEEecCC
Q psy16637 119 ---------------WLVQLEKKLHS-----------LQPHANFRLFLTMEI 144 (264)
Q Consensus 119 ---------------~l~~L~~~l~~-----------~~~h~~FRL~lt~~~ 144 (264)
....|-++|+. ..++.+|+.+.|++.
T Consensus 188 ~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~ni 239 (412)
T PRK05342 188 KSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNI 239 (412)
T ss_pred ccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCc
Confidence 33456566642 124677888888776
No 181
>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases.; PDB: 3D6K_C 3EZ1_A 3PPL_B.
Probab=28.39 E-value=50 Score=31.36 Aligned_cols=102 Identities=19% Similarity=0.395 Sum_probs=56.2
Q ss_pred cEEEEeCCCCCChhHHHHHHHHhcccceEEecCCC-CCHHHHHHHH-HHHHHcCCeEEeccccch-hHHHHHHHHHhhcc
Q psy16637 54 PAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSA-EGFNQADNVI-NVAVRSGKWVLLKNVHLA-PQWLVQLEKKLHSL 130 (264)
Q Consensus 54 Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~~-~~~~~a~~~l-~~a~~~G~WllL~N~hL~-~~~l~~L~~~l~~~ 130 (264)
.-+++-.||.|--..| .+..|.+...|.|.+. -.++.+++++ +....+|-|.+=+..+-. ..+-++..+.|-++
T Consensus 125 vKfLCPvPGYDRHFai---~E~~Giemi~VpM~~dGPDmD~Ve~LV~~D~svKGiWcVP~ySNPtG~tySde~vrrlA~m 201 (425)
T PF12897_consen 125 VKFLCPVPGYDRHFAI---TEHFGIEMIPVPMTEDGPDMDMVEELVAEDPSVKGIWCVPKYSNPTGITYSDEVVRRLAAM 201 (425)
T ss_dssp -EEEEEES--HHHHHH---HHHCT-EEEEEEEETTEE-HHHHHHHTHTSTTEEEEEE-SSS-TTT-----HHHHHHHHHS
T ss_pred ceEEecCCCchHHHHH---HHhhCcEEEecCCCCCCCCHHHHHHHHhcCCccceEEeCCCccCCCCccCCHHHHHHHhcC
Confidence 3456677888754443 3467888888888654 4567888887 467789999998877665 34445555556666
Q ss_pred C-CCCCceEEEe---------cCCCCCChHhHhhccee
Q psy16637 131 Q-PHANFRLFLT---------MEINPKVPVNLLRAGRI 158 (264)
Q Consensus 131 ~-~h~~FRL~lt---------~~~~~~~P~~lL~~s~k 158 (264)
+ .-++||+|-= .+.....|..++.-|.+
T Consensus 202 ~~AA~DFRI~WDNAY~vHhL~~~~~~~~~~nil~~~~~ 239 (425)
T PF12897_consen 202 KTAAPDFRIFWDNAYAVHHLYDEEPRDALLNILDACAK 239 (425)
T ss_dssp --SSTT-EEEEE-TTTT-BSSSSSS------HHHHHHH
T ss_pred CcCCcCeEEEeecCceEeeccccccchhhhHHHHHHHH
Confidence 5 4799999852 23222334577777654
No 182
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=28.39 E-value=4.3e+02 Score=23.52 Aligned_cols=171 Identities=20% Similarity=0.272 Sum_probs=94.5
Q ss_pred cEEEEeCCCCCChhHHHHHHHHh-cccceEEecCCCCCHHHHH----HHHHHHHHcC--CeEEeccccch-hHHHHHHHH
Q psy16637 54 PAVLCSVPGYDASGRVDDLAAEL-GKQIASIAIGSAEGFNQAD----NVINVAVRSG--KWVLLKNVHLA-PQWLVQLEK 125 (264)
Q Consensus 54 Pii~i~s~g~DP~~~i~~lA~~~-~~~~~~islG~~~~~~~a~----~~l~~a~~~G--~WllL~N~hL~-~~~l~~L~~ 125 (264)
=.+++..+|+ ....+.+||.-. +.++..+.++.+-+.+.-+ +++.+|--+| --+++.+.|+. ..+++.+..
T Consensus 33 h~LLvG~~Gs-Gr~sl~rLaa~i~~~~~~~i~~~~~y~~~~f~~dLk~~~~~ag~~~~~~vfll~d~qi~~~~fLe~in~ 111 (268)
T PF12780_consen 33 HALLVGVGGS-GRQSLARLAAFICGYEVFQIEITKGYSIKDFKEDLKKALQKAGIKGKPTVFLLTDSQIVDESFLEDINS 111 (268)
T ss_dssp EEEEECTTTS-CHHHHHHHHHHHTTEEEE-TTTSTTTHHHHHHHHHHHHHHHHHCS-S-EEEEEECCCSSSCHHHHHHHH
T ss_pred CeEEecCCCc-cHHHHHHHHHHHhccceEEEEeeCCcCHHHHHHHHHHHHHHHhccCCCeEEEecCcccchHhHHHHHHH
Confidence 3566666664 455667787764 4566677777765443332 3445555454 45556888887 578988887
Q ss_pred Hhhc------------------c----------------------CCCCCceEEEecCCCCC--------ChHhHhhcce
Q psy16637 126 KLHS------------------L----------------------QPHANFRLFLTMEINPK--------VPVNLLRAGR 157 (264)
Q Consensus 126 ~l~~------------------~----------------------~~h~~FRL~lt~~~~~~--------~P~~lL~~s~ 157 (264)
+|.+ + ....|.++.++.+|... +| ++++.|.
T Consensus 112 LL~sGeip~LF~~eE~~~i~~~l~~~~~~~~~~~~~~~~~~~F~~rvr~nLHivl~~sp~~~~~r~~~~~fP-aL~~~ct 190 (268)
T PF12780_consen 112 LLSSGEIPNLFTKEELDNIISSLREEAKAEGISDSRESLYEFFIERVRKNLHIVLCMSPVGPNFRDRCRSFP-ALVNCCT 190 (268)
T ss_dssp HHHCSS-TTTS-TCHHHHHHHHHHHHHHHCT--SSHHHHHHHHHHHHCCCEEEEEEESTTTTCCCHHHHHHC-CHHHHSE
T ss_pred HHhCCCCCCCccHHHHHHHHHHhHHHHHHcCCCCchHHHHHHHHHHHHhheeEEEEECCCCchHHHHHHhCc-chhcccE
Confidence 7521 0 13589999999988763 66 6778888
Q ss_pred eeeecC--CccHHHHHHHHhcCCChhhhccChhHHHHHHHHHHHHHHHHhhh-hhc-cccCCccccccCHHHHHHHHHH
Q psy16637 158 IFVFEP--PPGIKANLLRTFSTVPATRMMKAPNERARLYFLLAWFHAIVQER-LRY-VPLGWSKFYEFNESDLRVACDT 232 (264)
Q Consensus 158 kv~~e~--p~~lk~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~Hail~eR-~~y-~p~Gws~~Y~f~~~Dl~~~~~~ 232 (264)
...+++ ...+...-.+.++.. .. ........+.-..+.+|..+.+. +.| ...+ ..|..+.+-+..-++.
T Consensus 191 IdW~~~W~~eaL~~Va~~~l~~~---~~-~~~~~~~~l~~~~~~iH~sv~~~s~~y~~~~~--r~~yvTP~syL~~i~~ 263 (268)
T PF12780_consen 191 IDWFDPWPEEALLSVANKFLSDI---EL-LSEELKKSLAEIMVFIHQSVEEISRKYLQELR--RYNYVTPKSYLEFIKT 263 (268)
T ss_dssp EEEEES--HHHHHHHHHHHCCHH---HT-SS--HHHHHHHHHHHHHHHHHHHHHHHHHHCS--------HHHHHHHHH-
T ss_pred EEeCCcCCHHHHHHHHHHHHHhh---cc-cchhHHHHHHHHHHHHhccchHhHHHHHHHcC--CcceECcHHHHHHHhh
Confidence 888875 223333222222211 11 11222445677788899888875 333 2332 4445555555444443
No 183
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=27.93 E-value=3.6e+02 Score=22.57 Aligned_cols=67 Identities=18% Similarity=0.336 Sum_probs=37.8
Q ss_pred cEEEEeCCCCCChhHHHHHHHHhcccceEEecCCCCCHHHHHH-HHHHHHHcCCeEEeccc--cchhHHHHHHHHHhh
Q psy16637 54 PAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAEGFNQADN-VINVAVRSGKWVLLKNV--HLAPQWLVQLEKKLH 128 (264)
Q Consensus 54 Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~~~~~~~a~~-~l~~a~~~G~WllL~N~--hL~~~~l~~L~~~l~ 128 (264)
-+|++-+...|.|.++. ++.+.++.. . ...+...+.. .+.. .+|.||+.-++ -+.+.++..+.+.+.
T Consensus 28 eiivvD~gStD~t~~i~---~~~~~~v~~--~-~~~g~~~~~n~~~~~--a~~d~vl~lDaD~~~~~~~~~~l~~~~~ 97 (229)
T cd02511 28 EIIVVDSGSTDRTVEIA---KEYGAKVYQ--R-WWDGFGAQRNFALEL--ATNDWVLSLDADERLTPELADEILALLA 97 (229)
T ss_pred EEEEEeCCCCccHHHHH---HHcCCEEEE--C-CCCChHHHHHHHHHh--CCCCEEEEEeCCcCcCHHHHHHHHHHHh
Confidence 45555554566665544 455544433 3 3334333332 2332 46889999665 556788888877764
No 184
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=27.67 E-value=2.6e+02 Score=24.02 Aligned_cols=74 Identities=15% Similarity=0.165 Sum_probs=44.9
Q ss_pred EEEEeCCCCCChhHHHHHHHHhc---ccceEEecC---------CCCCHH----HHHHHHHHHHHcCCeEEeccccchhH
Q psy16637 55 AVLCSVPGYDASGRVDDLAAELG---KQIASIAIG---------SAEGFN----QADNVINVAVRSGKWVLLKNVHLAPQ 118 (264)
Q Consensus 55 ii~i~s~g~DP~~~i~~lA~~~~---~~~~~islG---------~~~~~~----~a~~~l~~a~~~G~WllL~N~hL~~~ 118 (264)
|+++-.||+.-|.....+|+..+ .++..++.. ...... .....++.++++|.||+++..+...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~~~~~~~e~~~~~~~~~~i~~~l~~~~~VI~D~~~~~~~ 81 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFPVWKEKYEEFIRDSTLYLIKTALKNKYSVIVDDTNYYNS 81 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhHHhhHHhHHHHHHHHHHHHHHHHhCCCeEEEeccchHHH
Confidence 56667788888888888887652 333333311 000001 11245778889999999998876666
Q ss_pred HHHHHHHHhh
Q psy16637 119 WLVQLEKKLH 128 (264)
Q Consensus 119 ~l~~L~~~l~ 128 (264)
+-..+.....
T Consensus 82 ~r~~l~~~ak 91 (249)
T TIGR03574 82 MRRDLINIAK 91 (249)
T ss_pred HHHHHHHHHH
Confidence 6556655443
No 185
>PRK10865 protein disaggregation chaperone; Provisional
Probab=27.28 E-value=3.1e+02 Score=28.80 Aligned_cols=110 Identities=15% Similarity=0.208 Sum_probs=64.6
Q ss_pred EEEEeCCCCCChhHHHHHHHHh----------cccceEEecCCCC--------CHHHHHHHHHHHHHcC--CeEEecccc
Q psy16637 55 AVLCSVPGYDASGRVDDLAAEL----------GKQIASIAIGSAE--------GFNQADNVINVAVRSG--KWVLLKNVH 114 (264)
Q Consensus 55 ii~i~s~g~DP~~~i~~lA~~~----------~~~~~~islG~~~--------~~~~a~~~l~~a~~~G--~WllL~N~h 114 (264)
++++-+||+.-|..++.+|.+. +..+..+.+|.-. -.+...++++...+.+ --|+++.+|
T Consensus 202 ~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih 281 (857)
T PRK10865 202 PVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELH 281 (857)
T ss_pred eEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHH
Confidence 4577899999999999999886 3345555565421 1123455666655543 467779998
Q ss_pred chhHH-----HHHHHHHhhccCCCCCceEEEecCCCCC-----ChHhHhhcceeeeecCC
Q psy16637 115 LAPQW-----LVQLEKKLHSLQPHANFRLFLTMEINPK-----VPVNLLRAGRIFVFEPP 164 (264)
Q Consensus 115 L~~~~-----l~~L~~~l~~~~~h~~FRL~lt~~~~~~-----~P~~lL~~s~kv~~e~p 164 (264)
.-..- -.....+|...-.....+++.++.+.+. ....+..++.+|....|
T Consensus 282 ~l~~~~~~~~~~d~~~~lkp~l~~g~l~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP 341 (857)
T PRK10865 282 TMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEP 341 (857)
T ss_pred HhccCCCCccchhHHHHhcchhhcCCCeEEEcCCCHHHHHHhhhcHHHHhhCCEEEeCCC
Confidence 55210 0011222222212456677776666542 56677777766666655
No 186
>KOG2035|consensus
Probab=27.12 E-value=2e+02 Score=26.41 Aligned_cols=43 Identities=16% Similarity=0.230 Sum_probs=35.2
Q ss_pred CCCceEEEecCCCCCChHhHhhcceeeeecCCc--cHHHHHHHHh
Q psy16637 133 HANFRLFLTMEINPKVPVNLLRAGRIFVFEPPP--GIKANLLRTF 175 (264)
Q Consensus 133 h~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p~--~lk~~l~~~~ 175 (264)
..+-||.|+|++.+.+-.++-.+|.-|..-+|+ .+-.+|.+..
T Consensus 155 s~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~ 199 (351)
T KOG2035|consen 155 SSNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVL 199 (351)
T ss_pred hcCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHH
Confidence 356799999999999999999999999998765 4566666555
No 187
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=26.29 E-value=2.5e+02 Score=20.87 Aligned_cols=84 Identities=12% Similarity=0.196 Sum_probs=46.6
Q ss_pred CccEEEEeCC-CCCChhHHHHHHHHhcccceEEecCCCCCHHHHHHHHHHHHH-cCC-eEEeccccch--hHHHHHHHHH
Q psy16637 52 NVPAVLCSVP-GYDASGRVDDLAAELGKQIASIAIGSAEGFNQADNVINVAVR-SGK-WVLLKNVHLA--PQWLVQLEKK 126 (264)
Q Consensus 52 ~~Pii~i~s~-g~DP~~~i~~lA~~~~~~~~~islG~~~~~~~a~~~l~~a~~-~G~-WllL~N~hL~--~~~l~~L~~~ 126 (264)
..+++.+..+ ..++.....+++.+.+..... ........+.+.++++ .+. -|+|+++|.. ..++..|..+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~l~~~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l 111 (131)
T PF13401_consen 37 HPDVIYVNCPSSRTPRDFAQEILEALGLPLKS-----RQTSDELRSLLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSL 111 (131)
T ss_dssp CEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS-----TS-HHHHHHHHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHhCccccc-----cCCHHHHHHHHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHH
Confidence 4456555444 335667777777777643322 2222333344444444 444 6788999765 2344444333
Q ss_pred hhccCCCCCceEEEecCC
Q psy16637 127 LHSLQPHANFRLFLTMEI 144 (264)
Q Consensus 127 l~~~~~h~~FRL~lt~~~ 144 (264)
. + ..++++.++..+
T Consensus 112 ~---~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 112 L---N-ESNIKVVLVGTP 125 (131)
T ss_dssp T---C-SCBEEEEEEESS
T ss_pred H---h-CCCCeEEEEECh
Confidence 3 2 788888888766
No 188
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=26.12 E-value=5.2e+02 Score=23.92 Aligned_cols=44 Identities=14% Similarity=0.310 Sum_probs=30.6
Q ss_pred HHHHHHHc---CCeEEe-ccccchhHHHHHHHHHhhccCCCCCceEEEec
Q psy16637 97 VINVAVRS---GKWVLL-KNVHLAPQWLVQLEKKLHSLQPHANFRLFLTM 142 (264)
Q Consensus 97 ~l~~a~~~---G~WllL-~N~hL~~~~l~~L~~~l~~~~~h~~FRL~lt~ 142 (264)
.++.+..+ +.=|+| ++|-+++.|++-+++.+.-.+..+ ++|+.+
T Consensus 88 aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~--~v~~IS 135 (334)
T cd02514 88 ALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDP--SLWCIS 135 (334)
T ss_pred HHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCC--CEEEEE
Confidence 55555544 455555 669999999998888876555433 788775
No 189
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=25.99 E-value=2.6e+02 Score=26.07 Aligned_cols=82 Identities=16% Similarity=0.199 Sum_probs=50.9
Q ss_pred HHHHHHHHHHH---HcCCe--EEeccccch-hHHHHHHHHHhhccCCCCCceEEEecCCCCCChHhHhhcceeeeecCC-
Q psy16637 92 NQADNVINVAV---RSGKW--VLLKNVHLA-PQWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPP- 164 (264)
Q Consensus 92 ~~a~~~l~~a~---~~G~W--llL~N~hL~-~~~l~~L~~~l~~~~~h~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p- 164 (264)
+.++.+.+... ..|+| ++|+++|-. ..-.+.|-+.+++ +.++=.++++++....++..+..+|..+.+.++
T Consensus 124 dqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEe--pp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~ 201 (365)
T PRK07471 124 DEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEE--PPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLA 201 (365)
T ss_pred HHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhc--CCCCeEEEEEECCchhchHHhhccceEEECCCCC
Confidence 44454444332 33555 456898766 4555566666663 333335566666666788889999999999876
Q ss_pred -ccHHHHHHHHh
Q psy16637 165 -PGIKANLLRTF 175 (264)
Q Consensus 165 -~~lk~~l~~~~ 175 (264)
..+...+.+..
T Consensus 202 ~~~i~~~L~~~~ 213 (365)
T PRK07471 202 PEDVIDALAAAG 213 (365)
T ss_pred HHHHHHHHHHhc
Confidence 45555555543
No 190
>KOG3018|consensus
Probab=25.86 E-value=1.5e+02 Score=26.76 Aligned_cols=61 Identities=16% Similarity=0.129 Sum_probs=38.8
Q ss_pred hhhhhHHhhcCCcHHHHHHHHHHHHhCcccccccCCCCChhHHhhhhcCCCccEEEEeCCCCC-ChhHHHHHHHH
Q psy16637 2 YQLLFIQALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVPAVLCSVPGYD-ASGRVDDLAAE 75 (264)
Q Consensus 2 qklll~r~lrpDr~~~a~~~~v~~~lg~~~~~~~~~~~~L~~~~~~~s~~~~Pii~i~s~g~D-P~~~i~~lA~~ 75 (264)
||++.+-+.+|++=...+++-|...=-. +- ++.++.|+.|++++.-.-.| -.+.|++..++
T Consensus 88 qK~~e~eAvhpv~n~~d~r~rvgpyrrc---------~~----fsh~a~p~ePLv~ihVAL~~~ia~svq~itk~ 149 (362)
T KOG3018|consen 88 QKLLEVEAVHPVVNREDVRERVGPYRRC---------LG----FSHPASPREPLVFIHVALMETIAQSVQEITKR 149 (362)
T ss_pred HHHHHHhhhccccCHHHHHHHhhhhhhh---------hc----cccCCCCCCceEEEehHhHHHHHHHHHHHHhc
Confidence 7899999999998877777766544111 11 11357788999998655433 23445555443
No 191
>PRK07261 topology modulation protein; Provisional
Probab=25.82 E-value=2.8e+02 Score=22.53 Aligned_cols=55 Identities=9% Similarity=0.143 Sum_probs=34.1
Q ss_pred EEEEeCCCCCChhHHHHHHHHhcccce---EEecCCC---CCHHHHHHHHHHHHHcCCeEE
Q psy16637 55 AVLCSVPGYDASGRVDDLAAELGKQIA---SIAIGSA---EGFNQADNVINVAVRSGKWVL 109 (264)
Q Consensus 55 ii~i~s~g~DP~~~i~~lA~~~~~~~~---~islG~~---~~~~~a~~~l~~a~~~G~Wll 109 (264)
|+++-++|+.-|.....+++..+.... .+..+.+ ...+.....++.++..+.||+
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~wIi 63 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQERDDDDMIADISNFLLKHDWII 63 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccccccCCHHHHHHHHHHHHhCCCEEE
Confidence 556778899999999999888764321 1222211 111244556677788888765
No 192
>PRK00124 hypothetical protein; Validated
Probab=25.80 E-value=2.5e+02 Score=22.94 Aligned_cols=38 Identities=24% Similarity=0.256 Sum_probs=29.3
Q ss_pred EEecCCCCCHHHHHHHHHHHHHcCCeEEeccccchhHHHH
Q psy16637 82 SIAIGSAEGFNQADNVINVAVRSGKWVLLKNVHLAPQWLV 121 (264)
Q Consensus 82 ~islG~~~~~~~a~~~l~~a~~~G~WllL~N~hL~~~~l~ 121 (264)
.+-+++|. +.|+..|-..++.|.-|+-++.-|+.-.+.
T Consensus 47 ~v~V~~g~--D~AD~~Iv~~~~~gDiVIT~Di~LAa~~l~ 84 (151)
T PRK00124 47 TVYVDAGF--DAADNEIVQLAEKGDIVITQDYGLAALALE 84 (151)
T ss_pred EEEeCCCC--ChHHHHHHHhCCCCCEEEeCCHHHHHHHHH
Confidence 44455554 589999999999999999999988865433
No 193
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=25.71 E-value=2.8e+02 Score=26.06 Aligned_cols=97 Identities=7% Similarity=0.064 Sum_probs=52.9
Q ss_pred hcCCCccEEEEeCCCCCChhHHHHHHHH---hcccceEEecCCCCCHHHHHHHH-----------------HHHHHcCCe
Q psy16637 48 ELRGNVPAVLCSVPGYDASGRVDDLAAE---LGKQIASIAIGSAEGFNQADNVI-----------------NVAVRSGKW 107 (264)
Q Consensus 48 ~s~~~~Pii~i~s~g~DP~~~i~~lA~~---~~~~~~~islG~~~~~~~a~~~l-----------------~~a~~~G~W 107 (264)
......|+++...+|+.-+.....+... .+..+..+....-.+ +..+..+ .-...+|+-
T Consensus 162 ~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gt 240 (457)
T PRK11361 162 IALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPE-SLLESELFGHEKGAFTGAQTLRQGLFERANEGT 240 (457)
T ss_pred HcCCCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCH-HHHHHHhcCCCCCCCCCCCCCCCCceEECCCCE
Confidence 3555678988878777644333322221 234555555443322 2222221 001245778
Q ss_pred EEeccccchhH-HHHHHHHHhhccC---------CCCCceEEEecCCC
Q psy16637 108 VLLKNVHLAPQ-WLVQLEKKLHSLQ---------PHANFRLFLTMEIN 145 (264)
Q Consensus 108 llL~N~hL~~~-~l~~L~~~l~~~~---------~h~~FRL~lt~~~~ 145 (264)
|+|++++..+. .-..|...+++-. .+.++|+..+++..
T Consensus 241 l~ld~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~ 288 (457)
T PRK11361 241 LLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRD 288 (457)
T ss_pred EEEechhhCCHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCC
Confidence 99999877754 3346666665321 24579999888654
No 194
>PRK14532 adenylate kinase; Provisional
Probab=25.40 E-value=3.7e+02 Score=21.78 Aligned_cols=32 Identities=19% Similarity=0.364 Sum_probs=26.1
Q ss_pred cEEEEeCCCCCChhHHHHHHHHhcccceEEecCC
Q psy16637 54 PAVLCSVPGYDASGRVDDLAAELGKQIASIAIGS 87 (264)
Q Consensus 54 Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~ 87 (264)
.|+++-.||+.-+..-..+|++.| +..|+.|.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g--~~~is~~d 33 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERG--MVQLSTGD 33 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC--CeEEeCcH
Confidence 367888999999999999998886 56787764
No 195
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=25.25 E-value=4.9e+02 Score=24.57 Aligned_cols=115 Identities=11% Similarity=0.124 Sum_probs=65.4
Q ss_pred cCCCccEEEEeCCCCCChhHHHHHHHHh---cccceEEecCCCCCHHHHHHHHH-----------------HHHHcCCeE
Q psy16637 49 LRGNVPAVLCSVPGYDASGRVDDLAAEL---GKQIASIAIGSAEGFNQADNVIN-----------------VAVRSGKWV 108 (264)
Q Consensus 49 s~~~~Pii~i~s~g~DP~~~i~~lA~~~---~~~~~~islG~~~~~~~a~~~l~-----------------~a~~~G~Wl 108 (264)
+....|+++...+|+.-+..-..+.... +..+..|..+.-.. +..+..+- -...+|+-+
T Consensus 158 ~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~-~~~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl 236 (469)
T PRK10923 158 SRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPK-DLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236 (469)
T ss_pred hccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCH-HHHHHHhcCCCCCCCCCCCcCCCCCeeECCCCEE
Confidence 4567799998888988775433333322 23566666654322 23333220 113457889
Q ss_pred Eeccccch-hHHHHHHHHHhhccC---------CCCCceEEEecCCC-------CCChHhHhhcceeeeecCC
Q psy16637 109 LLKNVHLA-PQWLVQLEKKLHSLQ---------PHANFRLFLTMEIN-------PKVPVNLLRAGRIFVFEPP 164 (264)
Q Consensus 109 lL~N~hL~-~~~l~~L~~~l~~~~---------~h~~FRL~lt~~~~-------~~~P~~lL~~s~kv~~e~p 164 (264)
+|++++.. +..-..|-+.+++-+ ...++|+..++... ..|...++..--.+..+-|
T Consensus 237 ~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~~P 309 (469)
T PRK10923 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLP 309 (469)
T ss_pred EEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHHHhcceeecCC
Confidence 99999755 444456766665421 13578999988653 2465666665444444433
No 196
>PTZ00088 adenylate kinase 1; Provisional
Probab=24.68 E-value=1.1e+02 Score=26.49 Aligned_cols=51 Identities=22% Similarity=0.289 Sum_probs=35.2
Q ss_pred EEEEeCCCCCChhHHHHHHHHhcccceEEecCCCCC--H---HHHHHHHHHHHHcCCe
Q psy16637 55 AVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAEG--F---NQADNVINVAVRSGKW 107 (264)
Q Consensus 55 ii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~~~~--~---~~a~~~l~~a~~~G~W 107 (264)
|+++-.||+.-+..-..+|++.| +..||+|+-=. + ...-..++..+.+|.|
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~g--~~~is~gdllr~~~~~~t~lg~~i~~~~~~G~l 64 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKEN--LKHINMGNILREEIKAKTTIGKEIQKVVTSGNL 64 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC--CcEEECChHHHHHhhcCChHHHHHHHHHHcCCc
Confidence 67788899999988888898886 66888886411 0 0111346667777765
No 197
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=24.51 E-value=3.8e+02 Score=21.70 Aligned_cols=21 Identities=29% Similarity=0.819 Sum_probs=16.0
Q ss_pred cCCeEEecc--ccchhHHHHHHH
Q psy16637 104 SGKWVLLKN--VHLAPQWLVQLE 124 (264)
Q Consensus 104 ~G~WllL~N--~hL~~~~l~~L~ 124 (264)
+|.|+++=| +.+.+.|++.+.
T Consensus 72 ~~~~i~~~D~D~~~~~~~l~~l~ 94 (221)
T cd02522 72 RGDWLLFLHADTRLPPDWDAAII 94 (221)
T ss_pred cCCEEEEEcCCCCCChhHHHHHH
Confidence 499999854 566688998873
No 198
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=24.39 E-value=6.3e+02 Score=24.17 Aligned_cols=112 Identities=14% Similarity=0.135 Sum_probs=67.6
Q ss_pred CccEEE--EeCCCCCChhHHHHHHHHhcccceEEecCC------CCCHHHHHHHHHHHHH------cCCeEEeccccch-
Q psy16637 52 NVPAVL--CSVPGYDASGRVDDLAAELGKQIASIAIGS------AEGFNQADNVINVAVR------SGKWVLLKNVHLA- 116 (264)
Q Consensus 52 ~~Pii~--i~s~g~DP~~~i~~lA~~~~~~~~~islG~------~~~~~~a~~~l~~a~~------~G~WllL~N~hL~- 116 (264)
..|.++ .-+||..-|...+.+|++.|.++..++.|+ |++....+.+++.|.+ +..-|+++.++..
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~ 225 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGA 225 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcC
Confidence 456444 457899999999999999998888887764 3333566677777764 3457777777633
Q ss_pred hH-----------HH-HHHHHHhhcc----------CCCCCceE--EEecCCCCCChHhHhh--cceeeeecC
Q psy16637 117 PQ-----------WL-VQLEKKLHSL----------QPHANFRL--FLTMEINPKVPVNLLR--AGRIFVFEP 163 (264)
Q Consensus 117 ~~-----------~l-~~L~~~l~~~----------~~h~~FRL--~lt~~~~~~~P~~lL~--~s~kv~~e~ 163 (264)
+. .+ ..|-.++... .....=|+ ..|++-.+.++..|++ +--+..+.|
T Consensus 226 g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i~lP 298 (413)
T PLN00020 226 GRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 298 (413)
T ss_pred CCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCceeCCC
Confidence 21 11 2232332211 01112244 4455666679999999 555555543
No 199
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=24.23 E-value=2e+02 Score=18.42 Aligned_cols=36 Identities=22% Similarity=0.197 Sum_probs=30.2
Q ss_pred cEEEEeCCCCCChhHHHHHHHHhcccceEEecCCCC
Q psy16637 54 PAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAE 89 (264)
Q Consensus 54 Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~~~ 89 (264)
|++++..++..+...+..+.++++..+..+.+.+..
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~ 36 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDG 36 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCH
Confidence 678888999888899999999999888888887653
No 200
>PRK08116 hypothetical protein; Validated
Probab=24.17 E-value=4.5e+02 Score=23.18 Aligned_cols=94 Identities=15% Similarity=0.206 Sum_probs=56.6
Q ss_pred CccEEEEeCCCCCChhHHHHHHHHh---cccceEEecCCCC-CH--------HHHHHHHHHHHHcCCeEEeccccc--hh
Q psy16637 52 NVPAVLCSVPGYDASGRVDDLAAEL---GKQIASIAIGSAE-GF--------NQADNVINVAVRSGKWVLLKNVHL--AP 117 (264)
Q Consensus 52 ~~Pii~i~s~g~DP~~~i~~lA~~~---~~~~~~islG~~~-~~--------~~a~~~l~~a~~~G~WllL~N~hL--~~ 117 (264)
..|+++.-++|+.-|.....+|... +..+..++...-- .+ ...+..+.....+..-|+|++.+. ..
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg~e~~t 193 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNADLLILDDLGAERDT 193 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcCCCEEEEecccCCCCC
Confidence 4579999999999998888887763 5556566543210 00 011222344566778999999853 34
Q ss_pred HHH-HHHHHHhhccCCCCCceEEEecCCCC
Q psy16637 118 QWL-VQLEKKLHSLQPHANFRLFLTMEINP 146 (264)
Q Consensus 118 ~~l-~~L~~~l~~~~~h~~FRL~lt~~~~~ 146 (264)
.|. ..|..+++..- ..+-.+++|++-.+
T Consensus 194 ~~~~~~l~~iin~r~-~~~~~~IiTsN~~~ 222 (268)
T PRK08116 194 EWAREKVYNIIDSRY-RKGLPTIVTTNLSL 222 (268)
T ss_pred HHHHHHHHHHHHHHH-HCCCCEEEECCCCH
Confidence 454 35666665321 12335888887553
No 201
>PRK06620 hypothetical protein; Validated
Probab=24.16 E-value=4.3e+02 Score=22.44 Aligned_cols=99 Identities=7% Similarity=-0.026 Sum_probs=54.2
Q ss_pred ccEEEEeCCCCCChhHHHHHHHHhcccceEEecCCCCCHHHHHHHHHHHHHcCCeEEeccccchhHHHHHHHHHhhccCC
Q psy16637 53 VPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAEGFNQADNVINVAVRSGKWVLLKNVHLAPQWLVQLEKKLHSLQP 132 (264)
Q Consensus 53 ~Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~~~~~~~a~~~l~~a~~~G~WllL~N~hL~~~~l~~L~~~l~~~~~ 132 (264)
.|+++.-++|+.-|......++..+.. .++-. ...+ ...++...++|+++|--.. ..|..+++.+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~--~~~~~-----~~~~----~~~~~~d~lliDdi~~~~~--~~lf~l~N~~~- 110 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAY--IIKDI-----FFNE----EILEKYNAFIIEDIENWQE--PALLHIFNIIN- 110 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCE--Ecchh-----hhch----hHHhcCCEEEEeccccchH--HHHHHHHHHHH-
Confidence 358889999999999888777665432 22211 1111 2235678999999993221 12333333222
Q ss_pred CCCceEEEecCCCC-CCh-HhHhhcce---eeeecCCc
Q psy16637 133 HANFRLFLTMEINP-KVP-VNLLRAGR---IFVFEPPP 165 (264)
Q Consensus 133 h~~FRL~lt~~~~~-~~P-~~lL~~s~---kv~~e~p~ 165 (264)
..+-.+.+|+...+ .++ ..+..+.. .+..++|.
T Consensus 111 e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd 148 (214)
T PRK06620 111 EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPD 148 (214)
T ss_pred hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCC
Confidence 12336777775443 221 23444443 66666654
No 202
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=24.09 E-value=2.2e+02 Score=21.79 Aligned_cols=54 Identities=17% Similarity=0.185 Sum_probs=34.0
Q ss_pred CCccEEEEeCCCCCChh-----HHHHHHHHhcccceEEecCCCCCHHHHHHHHHHHHHc
Q psy16637 51 GNVPAVLCSVPGYDASG-----RVDDLAAELGKQIASIAIGSAEGFNQADNVINVAVRS 104 (264)
Q Consensus 51 ~~~Pii~i~s~g~DP~~-----~i~~lA~~~~~~~~~islG~~~~~~~a~~~l~~a~~~ 104 (264)
..+|-+.+.--|.||.+ ...+.|++.|..+..+-+....+.+...+.|++.-+.
T Consensus 27 ~~~P~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~D 85 (117)
T PF00763_consen 27 GITPKLAIILVGDDPASISYVRSKQKAAEKLGIEFELIELPEDISEEELLELIEKLNED 85 (117)
T ss_dssp T---EEEEEEES--HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSSHHHHHHHHHHHHH-
T ss_pred CCCcEEEEEecCCChhHHHHHHHHHHHHHHcCCceEEEECCCCcCHHHHHHHHHHHhCC
Confidence 56798887777888875 4667777788888888887776656677777776655
No 203
>cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase .
Probab=23.98 E-value=2e+02 Score=24.85 Aligned_cols=35 Identities=37% Similarity=0.407 Sum_probs=23.5
Q ss_pred hHHhhhhcCCCccEEEEeCCCCCChhHHHHHHHHhc
Q psy16637 42 PHIVEHELRGNVPAVLCSVPGYDASGRVDDLAAELG 77 (264)
Q Consensus 42 ~~~~~~~s~~~~Pii~i~s~g~DP~~~i~~lA~~~~ 77 (264)
.+.+.....+..|+.+.+|.|.|-+ .|..+|.+.+
T Consensus 5 ~~av~~~~~~~~~v~~~LSGGlDSs-~va~~~~~~~ 39 (269)
T cd01991 5 EDAVRRRLRSDVPVGVLLSGGLDSS-LVAALAARLL 39 (269)
T ss_pred HHHHHHHhccCCceEEeecccHHHH-HHHHHHHHhh
Confidence 3444433556779999999999955 4556666654
No 204
>CHL00095 clpC Clp protease ATP binding subunit
Probab=23.91 E-value=4.8e+02 Score=27.19 Aligned_cols=96 Identities=17% Similarity=0.203 Sum_probs=58.3
Q ss_pred CCCcc---EEEEeCCCCCChhHHHHHHHHh---cccceEEecCCCCCHHHH---------------HHHHHHHHHcC--C
Q psy16637 50 RGNVP---AVLCSVPGYDASGRVDDLAAEL---GKQIASIAIGSAEGFNQA---------------DNVINVAVRSG--K 106 (264)
Q Consensus 50 ~~~~P---ii~i~s~g~DP~~~i~~lA~~~---~~~~~~islG~~~~~~~a---------------~~~l~~a~~~G--~ 106 (264)
.+..| ++|.-++|+.-|.....+|+.. +..+..+.|++-.+...+ ...+..+++.. .
T Consensus 534 ~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~ 613 (821)
T CHL00095 534 NPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYT 613 (821)
T ss_pred CCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCccchHHHHHHhCCCe
Confidence 45666 5677788999999999999876 234555555432110000 12345555543 4
Q ss_pred eEEeccccch-hHHHHHHHHHhhccC------C---CCCceEEEecCCC
Q psy16637 107 WVLLKNVHLA-PQWLVQLEKKLHSLQ------P---HANFRLFLTMEIN 145 (264)
Q Consensus 107 WllL~N~hL~-~~~l~~L~~~l~~~~------~---h~~FRL~lt~~~~ 145 (264)
-|++++++-+ +...+.|-+.++.-. . .++--+++|++..
T Consensus 614 VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g 662 (821)
T CHL00095 614 VVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLG 662 (821)
T ss_pred EEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcc
Confidence 5778999888 677777878876421 1 2344466676654
No 205
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=23.84 E-value=66 Score=26.36 Aligned_cols=44 Identities=27% Similarity=0.500 Sum_probs=31.5
Q ss_pred HHHHcCCeEEecc--ccchhHHHHHHHHHhhccCCCCCceEEEecCC
Q psy16637 100 VAVRSGKWVLLKN--VHLAPQWLVQLEKKLHSLQPHANFRLFLTMEI 144 (264)
Q Consensus 100 ~a~~~G~WllL~N--~hL~~~~l~~L~~~l~~~~~h~~FRL~lt~~~ 144 (264)
.+..++..++++. .||-|.|...|.+.+..... .+-.+|+|+.+
T Consensus 253 ~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~-~~~QviitTHS 298 (303)
T PF13304_consen 253 SAKKNGSILLIDEPENHLHPSWQRKLIELLKELSK-KNIQVIITTHS 298 (303)
T ss_dssp TTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGG-GSSEEEEEES-
T ss_pred CcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCc-cCCEEEEeCcc
Confidence 3334448899987 58889999999888865543 56788998854
No 206
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=23.53 E-value=4.5e+02 Score=22.15 Aligned_cols=74 Identities=19% Similarity=0.253 Sum_probs=41.7
Q ss_pred ccEEEEeCCCCCChhHH-HHHHHHhc-ccceEEecCCCCCHHHHH-HHHHHHHHcCCeEEeccc--cchhHHHHHHHHHh
Q psy16637 53 VPAVLCSVPGYDASGRV-DDLAAELG-KQIASIAIGSAEGFNQAD-NVINVAVRSGKWVLLKNV--HLAPQWLVQLEKKL 127 (264)
Q Consensus 53 ~Pii~i~s~g~DP~~~i-~~lA~~~~-~~~~~islG~~~~~~~a~-~~l~~a~~~G~WllL~N~--hL~~~~l~~L~~~l 127 (264)
..+|++-....|.|.++ .+++++.+ ..+..+......+...|. ..+.. .+|.|+++=|+ ...+.|++.+.+.+
T Consensus 41 ~eiivvDdgS~D~t~~i~~~~~~~~~~~~v~~~~~~~n~G~~~a~n~g~~~--a~g~~i~~lD~D~~~~~~~l~~l~~~~ 118 (243)
T PLN02726 41 FEIIVVDDGSPDGTQDVVKQLQKVYGEDRILLRPRPGKLGLGTAYIHGLKH--ASGDFVVIMDADLSHHPKYLPSFIKKQ 118 (243)
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHhcCCCcEEEEecCCCCCHHHHHHHHHHH--cCCCEEEEEcCCCCCCHHHHHHHHHHH
Confidence 35666655556776654 44444443 245555554444432332 22332 47999999665 44578888877655
Q ss_pred h
Q psy16637 128 H 128 (264)
Q Consensus 128 ~ 128 (264)
.
T Consensus 119 ~ 119 (243)
T PLN02726 119 R 119 (243)
T ss_pred H
Confidence 3
No 207
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=23.50 E-value=2.6e+02 Score=23.09 Aligned_cols=33 Identities=6% Similarity=-0.014 Sum_probs=17.9
Q ss_pred EEEEeCCCCC--Ch--hHHHHHHHHhcccceEEecCC
Q psy16637 55 AVLCSVPGYD--AS--GRVDDLAAELGKQIASIAIGS 87 (264)
Q Consensus 55 ii~i~s~g~D--P~--~~i~~lA~~~~~~~~~islG~ 87 (264)
+|++++.+.| |. ..+.+.+++.+.++.+|++|.
T Consensus 110 iiil~sd~~~~~~~~~~~~~~~l~~~~I~v~~IgiG~ 146 (183)
T cd01453 110 VLIIFSSLSTCDPGNIYETIDKLKKENIRVSVIGLSA 146 (183)
T ss_pred EEEEEcCCCcCChhhHHHHHHHHHHcCcEEEEEEech
Confidence 5555555443 32 134444555566677777774
No 208
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=23.30 E-value=1.8e+02 Score=25.06 Aligned_cols=39 Identities=18% Similarity=0.281 Sum_probs=29.5
Q ss_pred HHHHHhcccceEEecCCCCCHHHHHHHHHHHHHcCCeEEe
Q psy16637 71 DLAAELGKQIASIAIGSAEGFNQADNVINVAVRSGKWVLL 110 (264)
Q Consensus 71 ~lA~~~~~~~~~islG~~~~~~~a~~~l~~a~~~G~WllL 110 (264)
+.|.+.+.++..+|+|.... ...+++++.|.++|-.++.
T Consensus 87 ~~a~~~g~~VIn~S~g~~~~-~~l~~ai~~a~~~gilvv~ 125 (239)
T cd05561 87 DWLAEQGVRVVNISLAGPPN-ALLAAAVAAAAARGMVLVA 125 (239)
T ss_pred HHHHHCCCCEEEeCCCCCCC-HHHHHHHHHHHHCCCEEEE
Confidence 34556677888889986554 4667889999999977776
No 209
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=23.04 E-value=5.6e+02 Score=24.60 Aligned_cols=93 Identities=9% Similarity=0.163 Sum_probs=55.1
Q ss_pred CccEEEEeCCCCCChhHHHHHHHHh-----cccceEEecCCCCCHHHHH------HHH---HHHHHcCCeEEeccccchh
Q psy16637 52 NVPAVLCSVPGYDASGRVDDLAAEL-----GKQIASIAIGSAEGFNQAD------NVI---NVAVRSGKWVLLKNVHLAP 117 (264)
Q Consensus 52 ~~Pii~i~s~g~DP~~~i~~lA~~~-----~~~~~~islG~~~~~~~a~------~~l---~~a~~~G~WllL~N~hL~~ 117 (264)
..|+++.-++|..-|-.+..++... +.++.+++...-.. ..+. +.+ ..-.++-..|+|+++|.-.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~-~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l~ 219 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFAR-KAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFLS 219 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHH-HHHHHHHHhhhHHHHHHHHhccCCEEEEecccccc
Confidence 3589999999999998888888743 23445554422100 0000 111 2223456799999998763
Q ss_pred ---HHHHHHHHHhhccCCCCCceEEEecCCCC
Q psy16637 118 ---QWLVQLEKKLHSLQPHANFRLFLTMEINP 146 (264)
Q Consensus 118 ---~~l~~L~~~l~~~~~h~~FRL~lt~~~~~ 146 (264)
.+...|-.++.....+.. .+.+|++-.+
T Consensus 220 ~k~~~~e~lf~l~N~~~~~~k-~iIltsd~~P 250 (450)
T PRK14087 220 YKEKTNEIFFTIFNNFIENDK-QLFFSSDKSP 250 (450)
T ss_pred CCHHHHHHHHHHHHHHHHcCC-cEEEECCCCH
Confidence 455666666654422222 6888876554
No 210
>smart00350 MCM minichromosome maintenance proteins.
Probab=22.94 E-value=2.4e+02 Score=27.49 Aligned_cols=104 Identities=11% Similarity=0.143 Sum_probs=59.1
Q ss_pred CccEEEEeCCCCCChhHHHHHHHHhcccceEEe-cCC-CCCHH--HHHH------HHH---HHHHcCCeEEeccccch-h
Q psy16637 52 NVPAVLCSVPGYDASGRVDDLAAELGKQIASIA-IGS-AEGFN--QADN------VIN---VAVRSGKWVLLKNVHLA-P 117 (264)
Q Consensus 52 ~~Pii~i~s~g~DP~~~i~~lA~~~~~~~~~is-lG~-~~~~~--~a~~------~l~---~a~~~G~WllL~N~hL~-~ 117 (264)
..+++++-.||...+.....+++...... .++ .|. ..+.. ..+. .++ -...+|+-+++++.... +
T Consensus 236 ~~~vLL~G~pGtGKs~lar~l~~~~~r~~-~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~Gil~iDEi~~l~~ 314 (509)
T smart00350 236 DINILLLGDPGTAKSQLLKYVEKTAPRAV-YTTGKGSSAVGLTAAVTRDPETREFTLEGGALVLADNGVCCIDEFDKMDD 314 (509)
T ss_pred cceEEEeCCCChhHHHHHHHHHHHcCcce-EcCCCCCCcCCccccceEccCcceEEecCccEEecCCCEEEEechhhCCH
Confidence 45899999999988877777776432211 111 111 00100 0000 000 12245677788887655 3
Q ss_pred HHHHHHHHHhhcc-----------CCCCCceEEEecCCCC-------------CChHhHhhcc
Q psy16637 118 QWLVQLEKKLHSL-----------QPHANFRLFLTMEINP-------------KVPVNLLRAG 156 (264)
Q Consensus 118 ~~l~~L~~~l~~~-----------~~h~~FRL~lt~~~~~-------------~~P~~lL~~s 156 (264)
.....|.+.+++- .....||++.+++|.. .+|.++|.+-
T Consensus 315 ~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRF 377 (509)
T smart00350 315 SDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRF 377 (509)
T ss_pred HHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhCce
Confidence 3334454444321 2357999999999873 4999999987
No 211
>PF08571 Yos1: Yos1-like; InterPro: IPR013880 In yeast, Yos1 is a subunit of the Yip1p-Yif1p complex and is required for transport between the endoplasmic reticulum and the Golgi complex. Yos1 appears to be conserved in eukaryotes [].
Probab=22.42 E-value=45 Score=24.29 Aligned_cols=20 Identities=30% Similarity=0.388 Sum_probs=17.0
Q ss_pred HHHHHhhhhhccccCCcccc
Q psy16637 200 FHAIVQERLRYVPLGWSKFY 219 (264)
Q Consensus 200 ~Hail~eR~~y~p~Gws~~Y 219 (264)
--||+.|+|...+.||..+-
T Consensus 14 AiAILnE~RFL~kiGw~~~~ 33 (80)
T PF08571_consen 14 AIAILNEDRFLAKIGWSSSQ 33 (80)
T ss_pred HHHHcCHHHHhccCCCCCcc
Confidence 45789999999999998774
No 212
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=22.21 E-value=2.7e+02 Score=25.50 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=15.3
Q ss_pred ccccCCccccccCHHHHHHHHHHHH
Q psy16637 210 YVPLGWSKFYEFNESDLRVACDTLD 234 (264)
Q Consensus 210 y~p~Gws~~Y~f~~~Dl~~~~~~l~ 234 (264)
|..+|..+.+.|...|+.....+.+
T Consensus 265 f~~lg~~~~l~~~l~~~~~~~~~~~ 289 (318)
T COG3980 265 FEALGIIKQLGYHLKDLAKDYEILQ 289 (318)
T ss_pred HHhcCchhhccCCCchHHHHHHHHH
Confidence 4456666666666666666655544
No 213
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=22.21 E-value=6.7e+02 Score=23.68 Aligned_cols=72 Identities=17% Similarity=0.113 Sum_probs=39.1
Q ss_pred EEEEeCCCCCChhHHHHHHHHhcccceEEecCCCCCHHHHH-HHHHHHHHcCCeEEeccc--cchhHHHHHHHHHhh
Q psy16637 55 AVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAEGFNQAD-NVINVAVRSGKWVLLKNV--HLAPQWLVQLEKKLH 128 (264)
Q Consensus 55 ii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~~~~~~~a~-~~l~~a~~~G~WllL~N~--hL~~~~l~~L~~~l~ 128 (264)
++++-....|.|.++.+-+++....+..+-.....+...|. ..++. .+|.||+.=++ -+.++++.++.+.++
T Consensus 83 IiVVDd~StD~T~~il~~~~~~~~~v~v~~~~~~~Gka~AlN~gl~~--s~g~~v~~~DaD~~~~~d~L~~l~~~f~ 157 (439)
T TIGR03111 83 IILANNQSTDDSFQVFCRAQNEFPGLSLRYMNSDQGKAKALNAAIYN--SIGKYIIHIDSDGKLHKDAIKNMVTRFE 157 (439)
T ss_pred EEEEECCCChhHHHHHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHH--ccCCEEEEECCCCCcChHHHHHHHHHHH
Confidence 55555556677777654333333334333333333422322 23443 36999998554 455788887766653
No 214
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=22.14 E-value=61 Score=25.20 Aligned_cols=38 Identities=24% Similarity=0.432 Sum_probs=26.3
Q ss_pred CCCccEEEEeCCCC--CChhHHHHHHHHhcccceEEecCC
Q psy16637 50 RGNVPAVLCSVPGY--DASGRVDDLAAELGKQIASIAIGS 87 (264)
Q Consensus 50 ~~~~Pii~i~s~g~--DP~~~i~~lA~~~~~~~~~islG~ 87 (264)
.+..|+|++-.... +...++.+||++.|..+.+-.+|.
T Consensus 10 ~A~rP~il~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~k 49 (137)
T PF00205_consen 10 SAKRPVILAGRGARRSGAAEELRELAEKLGIPVATTPMGK 49 (137)
T ss_dssp H-SSEEEEE-HHHHHTTCHHHHHHHHHHHTSEEEEEGGGT
T ss_pred hCCCEEEEEcCCcChhhHHHHHHHHHHHHCCCEEecCccc
Confidence 35779988765544 788999999999987665444443
No 215
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=22.03 E-value=3.9e+02 Score=20.87 Aligned_cols=69 Identities=16% Similarity=0.159 Sum_probs=36.4
Q ss_pred EEeCC-CCCChhHHHHHHHHhcccceEEecCCCCCHHHHH-HHHHHHHHcCCeEEecc--ccchhHHHHHHHHHh
Q psy16637 57 LCSVP-GYDASGRVDDLAAELGKQIASIAIGSAEGFNQAD-NVINVAVRSGKWVLLKN--VHLAPQWLVQLEKKL 127 (264)
Q Consensus 57 ~i~s~-g~DP~~~i~~lA~~~~~~~~~islG~~~~~~~a~-~~l~~a~~~G~WllL~N--~hL~~~~l~~L~~~l 127 (264)
++... ..|++.++.+-........+.+-.....+...|. ..++. .+|.|+++=| +-+.+.|+..+...+
T Consensus 32 ivvd~~s~d~~~~~~~~~~~~~~~~~~~~~~~n~G~~~a~n~g~~~--a~gd~i~~lD~D~~~~~~~l~~l~~~~ 104 (185)
T cd04179 32 IVVDDGSTDGTAEIARELAARVPRVRVIRLSRNFGKGAAVRAGFKA--ARGDIVVTMDADLQHPPEDIPKLLEKL 104 (185)
T ss_pred EEEcCCCCCChHHHHHHHHHhCCCeEEEEccCCCCccHHHHHHHHH--hcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 33343 3466655444333333334455555544432332 23333 4579999954 456688988877653
No 216
>PRK04841 transcriptional regulator MalT; Provisional
Probab=21.97 E-value=8.8e+02 Score=24.94 Aligned_cols=45 Identities=13% Similarity=0.203 Sum_probs=29.0
Q ss_pred cCCeEEeccccchh--HHHHHHHHHhhccCCCCCceEEEecCCCCCChH
Q psy16637 104 SGKWVLLKNVHLAP--QWLVQLEKKLHSLQPHANFRLFLTMEINPKVPV 150 (264)
Q Consensus 104 ~G~WllL~N~hL~~--~~l~~L~~~l~~~~~h~~FRL~lt~~~~~~~P~ 150 (264)
..-.|+|+|.|... .....|..++.. ..++.++.+++...+.+|.
T Consensus 121 ~~~~lvlDD~h~~~~~~~~~~l~~l~~~--~~~~~~lv~~sR~~~~~~~ 167 (903)
T PRK04841 121 QPLYLVIDDYHLITNPEIHEAMRFFLRH--QPENLTLVVLSRNLPPLGI 167 (903)
T ss_pred CCEEEEEeCcCcCCChHHHHHHHHHHHh--CCCCeEEEEEeCCCCCCch
Confidence 35678899999873 233344444432 3578899998876555554
No 217
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=21.93 E-value=3.4e+02 Score=24.95 Aligned_cols=121 Identities=14% Similarity=0.113 Sum_probs=73.7
Q ss_pred cEEEEeCCCCCChhHHHHHHHHhcccceEEecCCCCCHHHHHHHHHHHHHcCCeEEeccccchh-HHHHHHHHHhhc---
Q psy16637 54 PAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAEGFNQADNVINVAVRSGKWVLLKNVHLAP-QWLVQLEKKLHS--- 129 (264)
Q Consensus 54 Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~~~~~~~a~~~l~~a~~~G~WllL~N~hL~~-~~l~~L~~~l~~--- 129 (264)
=+++.-+||..-|..-.-.|.++|.++++.|=+.-+-... -..+-..+++|+-++++.+|=.. ..-+-|...++-
T Consensus 54 HvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~gD-laaiLt~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~l 132 (332)
T COG2255 54 HVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKPGD-LAAILTNLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRL 132 (332)
T ss_pred eEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccChhh-HHHHHhcCCcCCeEEEehhhhcChhHHHHhhhhhhheeE
Confidence 3788999999999988889999999888766544332111 12456678999999999999654 333334333321
Q ss_pred ------------cC-CCCCceEEEecCCCCCChHhHhhc---ceeeeecCCccHHHHHHHHh
Q psy16637 130 ------------LQ-PHANFRLFLTMEINPKVPVNLLRA---GRIFVFEPPPGIKANLLRTF 175 (264)
Q Consensus 130 ------------~~-~h~~FRL~lt~~~~~~~P~~lL~~---s~kv~~e~p~~lk~~l~~~~ 175 (264)
+. .-+.|-|.=.+.-...++.+|-.+ ..++-|=.+..+...+.+.=
T Consensus 133 DI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a 194 (332)
T COG2255 133 DIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSA 194 (332)
T ss_pred EEEEccCCccceEeccCCCeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHH
Confidence 00 124455443333333344444332 23444556778888887753
No 218
>PLN02459 probable adenylate kinase
Probab=21.79 E-value=2.4e+02 Score=25.22 Aligned_cols=51 Identities=24% Similarity=0.315 Sum_probs=33.9
Q ss_pred EEEEeCCCCCChhHHHHHHHHhcccceEEecCCCCC--H---HHHHHHHHHHHHcCCe
Q psy16637 55 AVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAEG--F---NQADNVINVAVRSGKW 107 (264)
Q Consensus 55 ii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~~~~--~---~~a~~~l~~a~~~G~W 107 (264)
++++-.||+.-+..-..+|++.| +..||.|.-=- + ...-+.++..+.+|..
T Consensus 32 ii~~G~PGsGK~T~a~~la~~~~--~~~is~gdllR~ei~~~t~lg~~i~~~~~~G~l 87 (261)
T PLN02459 32 WVFLGCPGVGKGTYASRLSKLLG--VPHIATGDLVREEIKSSGPLGAQLKEIVNQGKL 87 (261)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC--CcEEeCcHHHHHHHhccchhHHHHHHHHHcCCc
Confidence 67778999998888888888876 66888876310 0 0111346666777753
No 219
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=21.76 E-value=6.1e+02 Score=24.22 Aligned_cols=91 Identities=15% Similarity=0.120 Sum_probs=54.8
Q ss_pred ccEEEEeCCCCCChhHHHHHHHHhcccceEEecCC----C-CCHHHHHHHHHHH---------HHcCCeEEeccccch-h
Q psy16637 53 VPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGS----A-EGFNQADNVINVA---------VRSGKWVLLKNVHLA-P 117 (264)
Q Consensus 53 ~Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~----~-~~~~~a~~~l~~a---------~~~G~WllL~N~hL~-~ 117 (264)
..+++.-++|+.-|.....+|+..+..+..+.... + -+ ...+..+..+ ...++-|+|+.++-. .
T Consensus 117 ~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyvG-~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~ 195 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVG-EDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISR 195 (413)
T ss_pred ceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccccc-ccHHHHHHHHHHhCcccHHhcccceEEecccchhch
Confidence 36888899999999999999988876654443211 1 01 1122333322 234567999998843 3
Q ss_pred --------------HHHHHHHHHhhcc-----------CCCCCceEEEecCC
Q psy16637 118 --------------QWLVQLEKKLHSL-----------QPHANFRLFLTMEI 144 (264)
Q Consensus 118 --------------~~l~~L~~~l~~~-----------~~h~~FRL~lt~~~ 144 (264)
.....|-++++.. .++.+|-.++|++.
T Consensus 196 ~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNi 247 (413)
T TIGR00382 196 KSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNI 247 (413)
T ss_pred hhccccccccccchhHHHHHHHHhhccceecccCCCccccCCCeEEEEcCCc
Confidence 2344455555311 13577888888877
No 220
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=21.65 E-value=3.1e+02 Score=20.86 Aligned_cols=7 Identities=29% Similarity=0.197 Sum_probs=3.0
Q ss_pred EEecCCC
Q psy16637 82 SIAIGSA 88 (264)
Q Consensus 82 ~islG~~ 88 (264)
.+-+|..
T Consensus 30 vi~lG~~ 36 (122)
T cd02071 30 VIYTGLR 36 (122)
T ss_pred EEECCCC
Confidence 4444443
No 221
>CHL00181 cbbX CbbX; Provisional
Probab=21.61 E-value=5.8e+02 Score=22.75 Aligned_cols=110 Identities=10% Similarity=0.100 Sum_probs=59.9
Q ss_pred CCccEEEEeCCCCCChhHHHHHHHHh---c----ccceEEecCC------CCCHHHHHHHHHHHHHcCCeEEeccccch-
Q psy16637 51 GNVPAVLCSVPGYDASGRVDDLAAEL---G----KQIASIAIGS------AEGFNQADNVINVAVRSGKWVLLKNVHLA- 116 (264)
Q Consensus 51 ~~~Pii~i~s~g~DP~~~i~~lA~~~---~----~~~~~islG~------~~~~~~a~~~l~~a~~~G~WllL~N~hL~- 116 (264)
+..+++|.-+||+.-|.....+|+.. | ..+..++... |+....+.+.+++| .|+-|+|+++|.-
T Consensus 58 ~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~l~~a--~ggVLfIDE~~~l~ 135 (287)
T CHL00181 58 PGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIGHTAPKTKEVLKKA--MGGVLFIDEAYYLY 135 (287)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHhccchHHHHHHHHHc--cCCEEEEEccchhc
Confidence 34468899999999998888887653 2 1244444211 11112334455554 4778899999852
Q ss_pred ---------hHHHHHHHHHhhccCCCCCceEEEecCCCC-----CChHhHhhcce-eeeecCC
Q psy16637 117 ---------PQWLVQLEKKLHSLQPHANFRLFLTMEINP-----KVPVNLLRAGR-IFVFEPP 164 (264)
Q Consensus 117 ---------~~~l~~L~~~l~~~~~h~~FRL~lt~~~~~-----~~P~~lL~~s~-kv~~e~p 164 (264)
..-...|.+.++ ....+.+++++..+.. ...+.+..++- .+.++++
T Consensus 136 ~~~~~~~~~~e~~~~L~~~me--~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~ 196 (287)
T CHL00181 136 KPDNERDYGSEAIEILLQVME--NQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDY 196 (287)
T ss_pred cCCCccchHHHHHHHHHHHHh--cCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCc
Confidence 222233333333 2346778877765432 11234555543 4555543
No 222
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Probab=21.57 E-value=3e+02 Score=27.47 Aligned_cols=47 Identities=28% Similarity=0.322 Sum_probs=31.4
Q ss_pred hhHHhhhhcCCCccEEEEeCCCCCChhHHHHHHHHh----c------ccceEEecCCC
Q psy16637 41 LPHIVEHELRGNVPAVLCSVPGYDASGRVDDLAAEL----G------KQIASIAIGSA 88 (264)
Q Consensus 41 L~~~~~~~s~~~~Pii~i~s~g~DP~~~i~~lA~~~----~------~~~~~islG~~ 88 (264)
|++.+.+...+..|+-+.+|.|.| ++.|..+|.+. + ..+.++++|..
T Consensus 214 L~~aV~~rl~sdvpvgv~LSGGLD-SSlIaala~~~~~~~~~~~~~~~~l~tfsig~~ 270 (578)
T PLN02549 214 FEKAVIKRLMTDVPFGVLLSGGLD-SSLVASIAARHLAETKAARQWGQQLHSFCVGLE 270 (578)
T ss_pred HHHHHHHHhccCCceeEeecCCcc-HHHHHHHHHHhhhhcccccccCCCceEEecCCC
Confidence 344444345567899999999999 44566676654 1 35777888764
No 223
>PF14085 DUF4265: Domain of unknown function (DUF4265)
Probab=21.50 E-value=3.6e+02 Score=20.70 Aligned_cols=60 Identities=17% Similarity=0.320 Sum_probs=39.2
Q ss_pred hcCCCccEEEEeCCCCCChhHHHHHHHHhcc-------cceEEecCCCCCHHHHHHHHHHHHHcCCe
Q psy16637 48 ELRGNVPAVLCSVPGYDASGRVDDLAAELGK-------QIASIAIGSAEGFNQADNVINVAVRSGKW 107 (264)
Q Consensus 48 ~s~~~~Pii~i~s~g~DP~~~i~~lA~~~~~-------~~~~islG~~~~~~~a~~~l~~a~~~G~W 107 (264)
.|.+.|==|++..++.+....+.+-.++.|. .+..+++....++..++..|+..-+.|.|
T Consensus 49 ~sGnsTiRv~~~~~~~~~~~~v~~~l~~lG~~~E~~~~~~lav~VP~~~~~~~i~~~L~~~~e~g~~ 115 (117)
T PF14085_consen 49 SSGNSTIRVIFDDPGPDDIEAVREELEALGCTVEGFSERMLAVDVPPSVDFDAIKDYLDRGEEQGWW 115 (117)
T ss_pred cCCCEEEEEEEcCCcchhHHHHHHHHHHcCCeEEccCCCEEEEEECCCCCHHHHHHHHHhhhhcCcc
Confidence 3555555444444444345556555555542 45678888887888889999997788877
No 224
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=21.23 E-value=2.9e+02 Score=27.42 Aligned_cols=47 Identities=28% Similarity=0.372 Sum_probs=31.3
Q ss_pred hhHHhhhhcCCCccEEEEeCCCCCChhHHHHHHHHhc--------------ccceEEecCCC
Q psy16637 41 LPHIVEHELRGNVPAVLCSVPGYDASGRVDDLAAELG--------------KQIASIAIGSA 88 (264)
Q Consensus 41 L~~~~~~~s~~~~Pii~i~s~g~DP~~~i~~lA~~~~--------------~~~~~islG~~ 88 (264)
|++.+.....+..|+-+.+|.|.| ++.|..+|++.. ..++++|+|-.
T Consensus 216 L~~aV~~rl~sdvpvGv~LSGGLD-SSlIaala~~~~~~~~~~~~~~~~~~~~l~tfsig~~ 276 (554)
T PRK09431 216 LEAAVKKRLMSDVPYGVLLSGGLD-SSLISAIAKKYAARRIEDDERSEAWWPQLHSFAVGLE 276 (554)
T ss_pred HHHHHHHHhcCCCceEEEcCCCcc-HHHHHHHHHHhhcccccccccccccCCCceEEEEeCC
Confidence 334443344567899999999999 455666776642 24777888764
No 225
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=21.15 E-value=7.4e+02 Score=23.76 Aligned_cols=111 Identities=11% Similarity=0.095 Sum_probs=64.0
Q ss_pred CccEEEEeCCCCCChhHHHHHHHHh---cccceEEecCCCCCHHHHH--------HHHHHHHHcCCeEEeccccchhH--
Q psy16637 52 NVPAVLCSVPGYDASGRVDDLAAEL---GKQIASIAIGSAEGFNQAD--------NVINVAVRSGKWVLLKNVHLAPQ-- 118 (264)
Q Consensus 52 ~~Pii~i~s~g~DP~~~i~~lA~~~---~~~~~~islG~~~~~~~a~--------~~l~~a~~~G~WllL~N~hL~~~-- 118 (264)
..|+++.-++|..-|-....+|.+. +.++.+++...-. .... ..++...++-+-|+++++|....
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~--~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~~k~ 218 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFT--EHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSGKG 218 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHH--HHHHHHHhcchHHHHHHHcccCCEEEEcchhhhcCCh
Confidence 3589999999999998888888754 4555566542100 0000 11222334556899999998632
Q ss_pred -HHHHHHHHhhccCCCCCceEEEecCCCC----CChHhHhhcc---eeeeecCCc
Q psy16637 119 -WLVQLEKKLHSLQPHANFRLFLTMEINP----KVPVNLLRAG---RIFVFEPPP 165 (264)
Q Consensus 119 -~l~~L~~~l~~~~~h~~FRL~lt~~~~~----~~P~~lL~~s---~kv~~e~p~ 165 (264)
+-..+...+..... .+=.+++|++..+ .+...+..++ ..+..++|.
T Consensus 219 ~~qeelf~l~N~l~~-~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd 272 (445)
T PRK12422 219 ATQEEFFHTFNSLHT-EGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLT 272 (445)
T ss_pred hhHHHHHHHHHHHHH-CCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCC
Confidence 33444444433211 1226888886543 3445555554 677777664
No 226
>PF02639 DUF188: Uncharacterized BCR, YaiI/YqxD family COG1671; InterPro: IPR003791 This entry describes proteins of unknown function.
Probab=21.04 E-value=2.4e+02 Score=22.35 Aligned_cols=60 Identities=18% Similarity=0.231 Sum_probs=42.4
Q ss_pred CCccEEEEeCCCCCChhHHHHHHHHhcccceEEecCCCCCHHHHHHHHHHHHHcCCeEEeccccchhHHHH
Q psy16637 51 GNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAEGFNQADNVINVAVRSGKWVLLKNVHLAPQWLV 121 (264)
Q Consensus 51 ~~~Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~~~~~~~a~~~l~~a~~~G~WllL~N~hL~~~~l~ 121 (264)
...|++|+.+....... ......|-+++|. +.|+..|-..++.|+-|+-++.-||.-.+.
T Consensus 9 ~~i~vi~Van~~h~~~~---------~~~~~~i~Vd~g~--DaaD~~I~~~~~~gDiVITqDigLA~~~l~ 68 (130)
T PF02639_consen 9 YGIPVIFVANYSHRLPR---------SPYVEMIVVDSGF--DAADFYIVNHAKPGDIVITQDIGLASLLLA 68 (130)
T ss_pred HCCEEEEEeCCCccCCC---------CCCeEEEEECCCC--ChHHHHHHHcCCCCCEEEECCHHHHHHHHH
Confidence 46788888766543222 1235566666665 479999999999999999999988865433
No 227
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=20.90 E-value=4.6e+02 Score=21.22 Aligned_cols=33 Identities=15% Similarity=0.120 Sum_probs=17.1
Q ss_pred hHHHHHHHHhcccceEEecCCCCCHHHHHHHHH
Q psy16637 67 GRVDDLAAELGKQIASIAIGSAEGFNQADNVIN 99 (264)
Q Consensus 67 ~~i~~lA~~~~~~~~~islG~~~~~~~a~~~l~ 99 (264)
.+...++++.+..+..+|--.+++++.+-..|.
T Consensus 127 ~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~ 159 (191)
T cd04112 127 EDGERLAKEYGVPFMETSAKTGLNVELAFTAVA 159 (191)
T ss_pred HHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 345555555555555566655555444433333
No 228
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=20.89 E-value=3.7e+02 Score=26.30 Aligned_cols=28 Identities=25% Similarity=0.482 Sum_probs=25.1
Q ss_pred HHHHHHHHHHcCCeEEeccccchhHHHH
Q psy16637 94 ADNVINVAVRSGKWVLLKNVHLAPQWLV 121 (264)
Q Consensus 94 a~~~l~~a~~~G~WllL~N~hL~~~~l~ 121 (264)
++.+++.+.++|.=|+++-.|+.+.++.
T Consensus 348 i~~vI~r~l~eG~SvIIEGVHl~P~~i~ 375 (475)
T PRK12337 348 LGAIQERSAQEGTSLVLEGVHLVPGYLR 375 (475)
T ss_pred HHHHHHHHHHcCCeEEEECCCCCHHHHH
Confidence 4667899999999999999999999876
No 229
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=20.51 E-value=3e+02 Score=21.34 Aligned_cols=38 Identities=13% Similarity=0.272 Sum_probs=23.5
Q ss_pred ccEEEEeCCCCCC---hhHH--HHHHHHhcccceEEecCCCCC
Q psy16637 53 VPAVLCSVPGYDA---SGRV--DDLAAELGKQIASIAIGSAEG 90 (264)
Q Consensus 53 ~Pii~i~s~g~DP---~~~i--~~lA~~~~~~~~~islG~~~~ 90 (264)
...|++.+.|.|+ ...+ .+++++.+..++++++|+.-.
T Consensus 95 ~~~ivliTDG~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~ 137 (152)
T cd01462 95 KADIVLITDGYEGGVSDELLREVELKRSRVARFVALALGDHGN 137 (152)
T ss_pred CceEEEECCCCCCCCCHHHHHHHHHHHhcCcEEEEEEecCCCC
Confidence 4577777777433 2222 344444557788999998644
No 230
>PLN02187 rooty/superroot1
Probab=20.50 E-value=3.2e+02 Score=26.14 Aligned_cols=24 Identities=21% Similarity=0.199 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHcCCeEEeccccc
Q psy16637 92 NQADNVINVAVRSGKWVLLKNVHL 115 (264)
Q Consensus 92 ~~a~~~l~~a~~~G~WllL~N~hL 115 (264)
+..+++++.|.+.|-||+.+.++-
T Consensus 224 e~l~~i~~~a~~~~i~iI~DE~Y~ 247 (462)
T PLN02187 224 DHLKKVAETARKLGIMVISDEVYD 247 (462)
T ss_pred HHHHHHHHHHHHCCCEEEEecccc
Confidence 456677888888899999988753
No 231
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=20.38 E-value=2.2e+02 Score=27.05 Aligned_cols=64 Identities=20% Similarity=0.241 Sum_probs=45.0
Q ss_pred ceEEecCCCCCHHHHHHHH-HHHHHcCCeEEeccccchhHHHHHHHHHhhccCCCCCceEEEecCC
Q psy16637 80 IASIAIGSAEGFNQADNVI-NVAVRSGKWVLLKNVHLAPQWLVQLEKKLHSLQPHANFRLFLTMEI 144 (264)
Q Consensus 80 ~~~islG~~~~~~~a~~~l-~~a~~~G~WllL~N~hL~~~~l~~L~~~l~~~~~h~~FRL~lt~~~ 144 (264)
...|.++..+ ...+.+-+ ...-.+-+.|+|-+-|++..=+.++.+.|+.-+.|.+=++|+++..
T Consensus 265 ~e~i~i~~~d-l~~~~~~l~~~~~~~~D~V~lGcPH~S~~El~~ia~ll~gr~~~~~~~~~i~t~~ 329 (400)
T PF04412_consen 265 AERITITDAD-LEEVYEELNTAGDEKVDLVALGCPHLSLEELREIAELLEGRKVHPNVPLWITTSR 329 (400)
T ss_pred ceEEEeCHHH-HHHHHHHhccCCCCCCCEEEECCCCCCHHHHHHHHHHHhCCCCCCCceEEEECCH
Confidence 4556665432 22333333 2223456899999999999888888888887778899999999854
No 232
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=20.17 E-value=2.5e+02 Score=26.85 Aligned_cols=39 Identities=26% Similarity=0.334 Sum_probs=26.3
Q ss_pred cCCCccEEEEeCCCCCChhHHHHHHHHhcc--cceEEecCCC
Q psy16637 49 LRGNVPAVLCSVPGYDASGRVDDLAAELGK--QIASIAIGSA 88 (264)
Q Consensus 49 s~~~~Pii~i~s~g~DP~~~i~~lA~~~~~--~~~~islG~~ 88 (264)
..+..|+-+.+|.|.|-+ .|..+|.+... .+..+++|-+
T Consensus 250 ~~~~~~vg~~LSGGlDSs-~iaa~a~~~~~~~~~~~~t~~~~ 290 (467)
T TIGR01536 250 LVADVPVGVLLSGGLDSS-LVAAIARREAPRGPVHTFSIGFE 290 (467)
T ss_pred hccCCceEEEecCChhHH-HHHHHHHHhcCCCCceEEEEecC
Confidence 345679999999999955 45666666533 5666666543
No 233
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=20.10 E-value=4.9e+02 Score=21.24 Aligned_cols=85 Identities=19% Similarity=0.266 Sum_probs=45.7
Q ss_pred CCccEEEEeCCCCCChhHHHHHHHHhcccceEEecCCC----CCHHHHHHHHHHHHHcCCeEEeccccchhHHHHHHHHH
Q psy16637 51 GNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSA----EGFNQADNVINVAVRSGKWVLLKNVHLAPQWLVQLEKK 126 (264)
Q Consensus 51 ~~~Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~~----~~~~~a~~~l~~a~~~G~WllL~N~hL~~~~l~~L~~~ 126 (264)
...|.. +..|+-+-...+.+.+++.|.++..-++... .+.+.+.+.+...++.|.=|+++...-...-.+.|+.+
T Consensus 95 g~~~~~-fr~P~G~~~~~~~~~l~~~G~~~v~w~~~~~D~~~~~~~~i~~~~~~~~~~g~Iil~Hd~~~~~~t~~~l~~~ 173 (191)
T TIGR02764 95 GKKPTL-FRPPSGAFNKAVLKAAESLGYTVVHWSVDSRDWKNPGVESIVDRVVKNTKPGDIILLHASDSAKQTVKALPTI 173 (191)
T ss_pred CCCCCE-EECCCcCCCHHHHHHHHHcCCeEEEecCCCCccCCCCHHHHHHHHHhcCCCCCEEEEeCCCCcHhHHHHHHHH
Confidence 344554 4556556677788888888866544444332 12223333444566789988887422223334445555
Q ss_pred hhccCCCCCce
Q psy16637 127 LHSLQPHANFR 137 (264)
Q Consensus 127 l~~~~~h~~FR 137 (264)
+..++ ..+||
T Consensus 174 i~~l~-~~Gy~ 183 (191)
T TIGR02764 174 IKKLK-EKGYE 183 (191)
T ss_pred HHHHH-HCCCE
Confidence 44332 34555
No 234
>COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=20.02 E-value=3.9e+02 Score=22.90 Aligned_cols=37 Identities=24% Similarity=0.276 Sum_probs=20.7
Q ss_pred cEEEEeCCCCCChhHHHHHHHHhcc---cceEEecCCCCC
Q psy16637 54 PAVLCSVPGYDASGRVDDLAAELGK---QIASIAIGSAEG 90 (264)
Q Consensus 54 Pii~i~s~g~DP~~~i~~lA~~~~~---~~~~islG~~~~ 90 (264)
-+.|+.||-.+--.++.++|++..+ -+..|-+|.-++
T Consensus 110 iVaFvgSpi~esedeLirlak~lkknnVAidii~fGE~~n 149 (243)
T COG5148 110 IVAFVGSPIQESEDELIRLAKQLKKNNVAIDIIFFGEAAN 149 (243)
T ss_pred EEEEecCcccccHHHHHHHHHHHHhcCeeEEEEehhhhhh
Confidence 3455566666656666666665432 245556665544
Done!