Query psy16637
Match_columns 264
No_of_seqs 124 out of 1120
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 18:09:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16637.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16637hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vkg_A Dynein heavy chain, cyt 100.0 1.6E-66 5.3E-71 568.0 24.8 254 1-256 2595-2862(3245)
2 4akg_A Glutathione S-transfera 100.0 6.3E-55 2.2E-59 475.0 22.9 238 6-256 2350-2601(2695)
3 4akg_A Glutathione S-transfera 97.4 0.00087 3E-08 74.8 12.9 116 50-165 643-781 (2695)
4 1hqc_A RUVB; extended AAA-ATPa 96.3 0.02 6.9E-07 50.0 9.8 115 51-165 37-169 (324)
5 3u61_B DNA polymerase accessor 96.1 0.028 9.5E-07 49.4 9.6 108 55-165 51-166 (324)
6 3vkg_A Dynein heavy chain, cyt 95.9 0.058 2E-06 61.2 13.1 114 52-165 604-741 (3245)
7 2chg_A Replication factor C sm 95.9 0.19 6.7E-06 40.3 13.2 110 54-165 40-162 (226)
8 3pfi_A Holliday junction ATP-d 95.6 0.12 4E-06 45.5 11.5 114 50-164 53-184 (338)
9 2chq_A Replication factor C sm 94.7 0.065 2.2E-06 46.3 7.0 110 54-165 40-162 (319)
10 1sxj_B Activator 1 37 kDa subu 94.6 0.27 9.2E-06 42.4 10.8 109 55-165 45-167 (323)
11 1njg_A DNA polymerase III subu 94.6 0.34 1.2E-05 39.2 10.7 111 53-165 46-186 (250)
12 1a5t_A Delta prime, HOLB; zinc 94.5 0.52 1.8E-05 41.7 12.6 118 54-173 26-178 (334)
13 2qz4_A Paraplegin; AAA+, SPG7, 94.2 0.6 2.1E-05 39.0 11.9 113 51-163 38-176 (262)
14 3h4m_A Proteasome-activating n 93.9 0.67 2.3E-05 39.4 11.7 115 50-164 49-188 (285)
15 3vfd_A Spastin; ATPase, microt 93.0 1.7 5.9E-05 39.0 13.4 114 51-164 147-282 (389)
16 1jr3_A DNA polymerase III subu 92.9 0.83 2.8E-05 40.2 10.9 119 53-173 39-189 (373)
17 1iqp_A RFCS; clamp loader, ext 92.4 0.81 2.8E-05 39.4 9.9 110 54-165 48-170 (327)
18 3pvs_A Replication-associated 92.2 0.71 2.4E-05 42.9 9.9 132 39-177 39-180 (447)
19 3cf0_A Transitional endoplasmi 92.2 2.4 8.2E-05 36.7 12.9 116 50-167 47-188 (301)
20 3t15_A Ribulose bisphosphate c 92.1 1.6 5.5E-05 37.8 11.5 101 54-154 38-174 (293)
21 2qp9_X Vacuolar protein sortin 91.6 2.5 8.7E-05 37.6 12.5 117 51-167 83-219 (355)
22 1xwi_A SKD1 protein; VPS4B, AA 91.3 7 0.00024 34.2 15.6 116 51-166 44-180 (322)
23 1jbk_A CLPB protein; beta barr 91.0 1.5 5.2E-05 33.9 9.4 111 51-165 42-186 (195)
24 1lv7_A FTSH; alpha/beta domain 90.8 5.6 0.00019 33.1 13.3 113 52-164 45-182 (257)
25 2bjv_A PSP operon transcriptio 90.6 2.5 8.5E-05 35.5 10.9 111 51-162 28-175 (265)
26 2gno_A DNA polymerase III, gam 90.5 2.4 8.2E-05 37.1 11.1 119 53-175 18-152 (305)
27 3n70_A Transport activator; si 90.0 2.1 7.3E-05 32.6 9.2 91 50-145 22-116 (145)
28 4fcw_A Chaperone protein CLPB; 89.7 1.5 5.1E-05 37.6 8.9 114 51-164 46-216 (311)
29 3eie_A Vacuolar protein sortin 89.6 3.5 0.00012 35.9 11.4 117 51-167 50-186 (322)
30 3m6a_A ATP-dependent protease 89.3 0.57 2E-05 44.6 6.4 114 52-165 108-254 (543)
31 3b9p_A CG5977-PA, isoform A; A 89.3 5.4 0.00019 33.9 12.2 117 51-167 53-191 (297)
32 3syl_A Protein CBBX; photosynt 89.1 2.3 8E-05 36.4 9.7 112 50-165 65-205 (309)
33 1sxj_C Activator 1 40 kDa subu 89.1 4.2 0.00014 35.6 11.6 119 55-175 49-182 (340)
34 2v1u_A Cell division control p 88.8 6.2 0.00021 34.4 12.6 124 51-174 43-213 (387)
35 1sxj_D Activator 1 41 kDa subu 88.7 4 0.00014 35.4 11.1 120 54-175 60-205 (353)
36 1r6b_X CLPA protein; AAA+, N-t 88.4 2 6.8E-05 42.2 9.8 93 54-146 490-609 (758)
37 3pxi_A Negative regulator of g 88.1 2.4 8.1E-05 41.8 10.1 111 54-164 523-662 (758)
38 3d8b_A Fidgetin-like protein 1 88.1 5.5 0.00019 35.3 11.7 117 51-167 116-253 (357)
39 3co5_A Putative two-component 88.0 0.64 2.2E-05 35.7 4.8 91 50-145 25-116 (143)
40 1ojl_A Transcriptional regulat 87.8 8.3 0.00028 33.4 12.5 110 50-162 23-171 (304)
41 2p65_A Hypothetical protein PF 86.5 1.9 6.5E-05 33.3 7.0 111 51-165 42-187 (187)
42 2zan_A Vacuolar protein sortin 86.5 6.2 0.00021 36.3 11.4 117 51-167 166-303 (444)
43 2ce7_A Cell division protein F 86.0 6 0.00021 37.0 11.1 113 53-165 50-187 (476)
44 2r44_A Uncharacterized protein 86.0 1.1 3.7E-05 39.2 5.7 110 52-164 46-185 (331)
45 1d2n_A N-ethylmaleimide-sensit 85.7 1.8 6.2E-05 36.6 6.9 122 52-174 64-207 (272)
46 1g8p_A Magnesium-chelatase 38 85.3 4 0.00014 35.4 9.1 63 104-166 144-220 (350)
47 1ofh_A ATP-dependent HSL prote 85.0 4.1 0.00014 34.5 8.9 115 51-165 49-203 (310)
48 3uk6_A RUVB-like 2; hexameric 84.2 11 0.00037 32.9 11.5 119 53-174 71-271 (368)
49 3pxg_A Negative regulator of g 81.1 7 0.00024 36.2 9.3 109 51-165 200-326 (468)
50 4b4t_K 26S protease regulatory 81.1 29 0.00099 31.9 13.4 124 52-175 206-356 (428)
51 3bos_A Putative DNA replicatio 80.0 2.2 7.4E-05 34.6 4.9 112 51-165 51-175 (242)
52 3bcv_A Putative glycosyltransf 79.0 18 0.0006 29.1 10.3 71 55-129 37-111 (240)
53 3hu3_A Transitional endoplasmi 78.7 11 0.00038 35.2 9.9 115 50-164 236-372 (489)
54 1sxj_E Activator 1 40 kDa subu 78.5 20 0.00068 31.0 11.1 117 55-173 39-204 (354)
55 2qby_B CDC6 homolog 3, cell di 77.4 24 0.00082 30.7 11.4 118 53-173 46-208 (384)
56 4b4t_J 26S protease regulatory 76.6 45 0.0015 30.4 13.1 125 51-175 181-331 (405)
57 1qvr_A CLPB protein; coiled co 76.3 12 0.00041 37.3 9.9 92 53-144 589-710 (854)
58 1l8q_A Chromosomal replication 75.4 21 0.00071 30.6 10.2 110 52-163 37-166 (324)
59 3dzd_A Transcriptional regulat 74.3 17 0.00058 32.4 9.5 155 7-162 100-297 (368)
60 1um8_A ATP-dependent CLP prote 74.0 18 0.00063 31.8 9.7 78 51-128 71-176 (376)
61 3pxi_A Negative regulator of g 71.9 17 0.0006 35.5 9.7 109 51-165 200-326 (758)
62 2r62_A Cell division protease 70.5 2 6.7E-05 36.1 2.2 113 52-164 44-183 (268)
63 4b4t_L 26S protease subunit RP 70.3 42 0.0015 30.8 11.4 115 51-165 214-353 (437)
64 1sxj_A Activator 1 95 kDa subu 68.6 25 0.00087 32.7 9.7 118 51-173 76-220 (516)
65 4b4t_M 26S protease regulatory 68.0 64 0.0022 29.6 12.1 115 51-165 214-353 (434)
66 1r6b_X CLPA protein; AAA+, N-t 60.6 34 0.0011 33.4 9.2 115 51-165 206-350 (758)
67 4b4t_H 26S protease regulatory 60.0 1.1E+02 0.0038 28.4 12.9 126 50-175 241-392 (467)
68 1qg8_A Protein (spore coat pol 58.1 22 0.00075 28.9 6.4 71 55-129 33-115 (255)
69 2z4s_A Chromosomal replication 57.3 30 0.001 31.5 7.8 111 52-165 130-264 (440)
70 2qby_A CDC6 homolog 1, cell di 56.8 93 0.0032 26.5 11.2 122 51-173 44-208 (386)
71 4b4t_I 26S protease regulatory 56.6 1.2E+02 0.0042 27.8 11.7 125 51-175 215-365 (437)
72 2xb4_A Adenylate kinase; ATP-b 54.9 81 0.0028 25.3 10.4 87 55-143 3-115 (223)
73 1qvr_A CLPB protein; coiled co 54.3 31 0.0011 34.3 7.8 110 52-165 191-333 (854)
74 1ypw_A Transitional endoplasmi 52.9 5.9 0.0002 39.5 2.3 111 52-162 511-646 (806)
75 2x5n_A SPRPN10, 26S proteasome 51.9 24 0.00081 28.4 5.5 18 72-89 130-147 (192)
76 2lnd_A De novo designed protei 51.0 26 0.00089 24.6 4.7 73 15-87 14-87 (112)
77 3hws_A ATP-dependent CLP prote 50.8 30 0.001 30.3 6.4 78 51-128 50-155 (363)
78 3f9v_A Minichromosome maintena 49.4 5.3 0.00018 38.3 1.3 109 53-164 328-478 (595)
79 1ny5_A Transcriptional regulat 48.1 1.5E+02 0.005 26.3 10.8 96 49-145 157-282 (387)
80 1jr3_D DNA polymerase III, del 43.4 1.5E+02 0.0053 25.2 9.9 129 39-175 7-155 (343)
81 3be4_A Adenylate kinase; malar 43.4 1.2E+02 0.0042 24.0 10.6 88 54-143 7-121 (217)
82 3cf2_A TER ATPase, transitiona 43.2 74 0.0025 31.7 8.4 124 52-175 238-384 (806)
83 3zvl_A Bifunctional polynucleo 43.1 84 0.0029 28.2 8.3 72 55-128 261-332 (416)
84 3k1j_A LON protease, ATP-depen 43.0 16 0.00055 34.8 3.5 60 102-161 199-284 (604)
85 1ijb_A VON willebrand factor; 42.1 1.2E+02 0.0042 23.7 8.8 70 54-124 117-192 (202)
86 1mf7_A Integrin alpha M; cell 39.4 61 0.0021 25.2 6.1 73 54-126 108-188 (194)
87 1ypw_A Transitional endoplasmi 39.2 2.3E+02 0.0079 27.9 11.4 105 50-154 236-359 (806)
88 2d7i_A Polypeptide N-acetylgal 37.3 99 0.0034 29.0 8.1 71 55-128 147-222 (570)
89 2z86_A Chondroitin synthase; G 36.8 1.2E+02 0.0042 28.3 8.7 71 54-128 406-480 (625)
90 1xhb_A Polypeptide N-acetylgal 34.4 1.3E+02 0.0045 27.0 8.2 72 55-128 64-140 (472)
91 2dhr_A FTSH; AAA+ protein, hex 33.6 1E+02 0.0034 28.8 7.3 112 54-165 66-202 (499)
92 4b4t_W RPN10, 26S proteasome r 32.4 56 0.0019 28.0 4.9 35 55-89 111-148 (268)
93 4fix_A UDP-galactofuranosyl tr 30.5 1.4E+02 0.0046 28.8 7.9 72 56-128 215-294 (657)
94 1fnn_A CDC6P, cell division co 28.9 2.7E+02 0.0091 23.7 11.6 122 54-175 46-206 (389)
95 3cf2_A TER ATPase, transitiona 28.8 2.5E+02 0.0084 27.9 9.5 113 53-167 512-650 (806)
96 3ibs_A Conserved hypothetical 28.2 2.1E+02 0.0071 22.2 7.6 36 53-88 112-150 (218)
97 1q15_A CARA; CMPR, (2S,5S)-5-c 28.0 58 0.002 30.3 4.6 47 50-97 236-284 (503)
98 2nly_A BH1492 protein, diverge 28.0 1.8E+02 0.0062 24.4 7.3 70 56-125 129-213 (245)
99 2q02_A Putative cytoplasmic pr 26.8 2.5E+02 0.0084 22.6 8.0 71 68-140 89-169 (272)
100 1jgt_A Beta-lactam synthetase; 26.0 61 0.0021 30.3 4.4 48 50-98 239-288 (513)
101 3sr0_A Adenylate kinase; phosp 24.9 2.6E+02 0.009 22.2 10.1 31 55-87 3-33 (206)
102 1n3y_A Integrin alpha-X; alpha 24.8 1.3E+02 0.0044 23.1 5.7 72 54-125 112-191 (198)
103 1iy2_A ATP-dependent metallopr 24.8 2.9E+02 0.0098 22.6 10.7 112 54-165 75-211 (278)
104 3rag_A Uncharacterized protein 24.6 1.8E+02 0.006 24.5 6.6 64 52-116 9-80 (242)
105 2c95_A Adenylate kinase 1; tra 24.2 2.3E+02 0.0079 21.4 7.4 25 54-78 11-35 (196)
106 2hx0_A Putative DNA-binding pr 23.7 64 0.0022 25.0 3.5 31 49-79 15-45 (154)
107 1fo8_A Alpha-1,3-mannosyl-glyc 23.2 3.5E+02 0.012 23.7 8.6 34 95-128 88-125 (343)
108 2fna_A Conserved hypothetical 22.9 3.1E+02 0.011 22.7 8.2 37 105-144 138-179 (357)
109 1ct9_A Asparagine synthetase B 22.2 1.4E+02 0.0047 28.1 6.1 40 49-89 223-276 (553)
110 3mvn_A UDP-N-acetylmuramate:L- 21.1 2.5E+02 0.0087 21.3 6.6 33 93-125 127-159 (163)
No 1
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=100.00 E-value=1.6e-66 Score=568.04 Aligned_cols=254 Identities=58% Similarity=1.023 Sum_probs=238.7
Q ss_pred ChhhhhHHhhcCCcHHHHHHHHHHHHhCcccccccCCCCChhHHhhhhcCCCccEEEEeCCCCCChhHHHHHHHHhcccc
Q psy16637 1 MYQLLFIQALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVPAVLCSVPGYDASGRVDDLAAELGKQI 80 (264)
Q Consensus 1 fqklll~r~lrpDr~~~a~~~~v~~~lg~~~~~~~~~~~~L~~~~~~~s~~~~Pii~i~s~g~DP~~~i~~lA~~~~~~~ 80 (264)
||||||+||+||||+..|+++||.+.||.+|++ ++++||+++++++|++++|+||++|||+||+..|+++|+++|.++
T Consensus 2595 fqkLlllr~lRpDr~~~a~~~fV~~~lG~~fv~--~~~~dl~~~~~~es~~~tPlifilSpG~DP~~~l~~lA~~~~~~~ 2672 (3245)
T 3vkg_A 2595 FRKILLMKAFHSDRVLQYSHSFVCSVFGEDFLN--TQELDMANIVEKEVKSSSPLLLCSVPGYDASSKVDDLALQLHKQY 2672 (3245)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHHSCTTTTC--C--CCHHHHHHHSSCTTSCEECEECTTCCCHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHcCCccCC--CCCCCHHHHHhccCCCCccEEEEeCCCCChHHHHHHHHHHhCCCc
Confidence 799999999999999999999999999999998 899999999953799999999999999999999999999999999
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHcCCeEEeccccchhHHHHHHHHHhhccCCCCCceEEEecCCCCCChHhHhhcceeee
Q psy16637 81 ASIAIGSAEGFNQADNVINVAVRSGKWVLLKNVHLAPQWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFV 160 (264)
Q Consensus 81 ~~islG~~~~~~~a~~~l~~a~~~G~WllL~N~hL~~~~l~~L~~~l~~~~~h~~FRL~lt~~~~~~~P~~lL~~s~kv~ 160 (264)
+.||||+||+...|+++|++|+++|+||+||||||+++||+.||+++++.++|++||||||++|++.||.++||+|+|++
T Consensus 2673 ~~iSLGqgQg~~~A~~~i~~a~~~G~WV~LqNcHL~~sWl~~LEk~le~~~~h~~FRLwLTsep~~~fP~~iLq~siKit 2752 (3245)
T 3vkg_A 2673 KSFAIGSPEGFELAEKSIYAAAKSGTWVLLKNIHLAPQWLVQLEKKLHSLSPHPSFRLFMTSEIHPALPANLLRMSNVFS 2752 (3245)
T ss_dssp CCCBTTSHHHHHHHHHHHHHHHHHTCEEECBCGGGCTTTHHHHHHHHHTCCCCTTCEEECCEESCTTSCHHHHHTSEECC
T ss_pred EEEECCCCccHHHHHHHHHHHHHcCCEEEEechhhhHhHHHHHHHHHHccCCCCCeeEEEEecCCCCCCHHHHHhhhHhe
Confidence 99999999985689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCccHHHHHHHHhcCCChhhhccChhHHHHHHHHHHHHHHHHhhhhhccccCCccccccCHHHHHHHHHHHHHHHhhh
Q psy16637 161 FEPPPGIKANLLRTFSTVPATRMMKAPNERARLYFLLAWFHAIVQERLRYVPLGWSKFYEFNESDLRVACDTLDTWIDST 240 (264)
Q Consensus 161 ~e~p~~lk~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~Hail~eR~~y~p~Gws~~Y~f~~~Dl~~~~~~l~~~~~~~ 240 (264)
+|||+|+|+||+++|..++++.+++++.++++++|+|||||||++||++|||+|||++|+||++||.+|+++|++|++..
T Consensus 2753 ~EpP~GlkaNl~rs~~~~~~~~~~~~~~~~~~llf~L~fFHAvvqERrkfgplGWn~~YeFn~sDl~~s~~~l~~~l~~~ 2832 (3245)
T 3vkg_A 2753 YENPPGVKANLLHTFIGIPATRMDKQPAERSRIYFLLAWFHAIIQERLRYIPLGWTKFFEFNDADLRGALDSIDYWVDLY 2832 (3245)
T ss_dssp BCCCSSHHHHHHHHHTTSCHHHHTSSSTHHHHHHHHHHHHHHHHHHGGGGTTTSCSSCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred eCCChhHHHHHHHHHHhCCHHHhccCcHHHHHHHHHHHHHHHHHHHHHHhCccccCcccccchHHHHHHHHHHHHHHHHh
Confidence 99999999999999999988888877888999999999999999999999999999999999999999999999999987
Q ss_pred cCCCCC--------------CCCcccCCCC
Q psy16637 241 AMGKRD--------------YAMYHSAGPS 256 (264)
Q Consensus 241 ~~~~~~--------------~~~~~~~~~~ 256 (264)
+.+|.+ +-+.+|||+-
T Consensus 2833 ~~~~~n~~~~~iPw~~L~yl~gei~YGGrV 2862 (3245)
T 3vkg_A 2833 SKGRSNIDPDKIPWIAVRTILGSTIYGGRI 2862 (3245)
T ss_dssp STTCSCCCTTTSCHHHHHHCCCCCCCSTTC
T ss_pred cccccccCCCCCCHHHHHHHHhhcccCCcc
Confidence 666643 3345899985
No 2
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=100.00 E-value=6.3e-55 Score=475.04 Aligned_cols=238 Identities=25% Similarity=0.399 Sum_probs=207.7
Q ss_pred hHHhhcCCcHHHHHHHHHHHHhCcccccccCCCCChhHHhhhhcCCCccEEEEeCCCCCChhHHHHHHHHhcccceEEec
Q psy16637 6 FIQALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAI 85 (264)
Q Consensus 6 l~r~lrpDr~~~a~~~~v~~~lg~~~~~~~~~~~~L~~~~~~~s~~~~Pii~i~s~g~DP~~~i~~lA~~~~~~~~~isl 85 (264)
+++++|+|++..++ +|+...++ ++++||++.+ ++++.+|+||++|||+||+..|+++|++++.+++.|||
T Consensus 2350 l~~~~~~~~~~~~~-~~~~~~~~-------~~~~~l~~~~--~s~~~~PlifilspG~DP~~~l~~la~~~~~~~~~iSl 2419 (2695)
T 4akg_A 2350 LWDYVTTKSYISAL-NWFKNEFF-------VDEWNIADVV--ANSDNNYFTMASERDVDGTFKLIELAKASKESLKIIPL 2419 (2695)
T ss_dssp HHHHHHTTCHHHHH-HHHHHTTC-------CCCCCHHHHH--HHCCCSEEEEEECTTCCTHHHHHHHHHTTTCCCCEEEC
T ss_pred HHHHhcccHHHHHH-HHHHhccC-------CCcccHHHHH--hcCCCCeEEeeCCCCCCchHHHHHHHHHhCCCcEEEec
Confidence 48899999887665 45554333 5679999865 47889999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEEeccccchhHHHHHH-HHHhhc---cCCCCCceEEEecC-CCCCChHhHhhcceeee
Q psy16637 86 GSAEGFNQADNVINVAVRSGKWVLLKNVHLAPQWLVQL-EKKLHS---LQPHANFRLFLTME-INPKVPVNLLRAGRIFV 160 (264)
Q Consensus 86 G~~~~~~~a~~~l~~a~~~G~WllL~N~hL~~~~l~~L-~~~l~~---~~~h~~FRL~lt~~-~~~~~P~~lL~~s~kv~ 160 (264)
|+||+...|+++|++|+++|+||+||||||+++||+.| |+++++ .++|++||||||++ |++.||.++||+|+|++
T Consensus 2420 Gqgq~~~~A~~~i~~a~~~G~Wv~LqN~HL~~swl~~Llek~~e~~~~~~~h~~FRLwlts~~~~~~fP~~iLq~s~K~t 2499 (2695)
T 4akg_A 2420 GSIENLNYAQEEISKSKIEGGWILLQNIQMSLSWVKTYLHKHVEETKAAEEHEKFKMFMTCHLTGDKLPAPLLQRTDRFV 2499 (2695)
T ss_dssp CSHHHHHHHHHHHHHHHHHTCCEEEETGGGGHHHHHHTHHHHHHHCSSTTTSCSCCEEEECCSSSCCCCHHHHHHSEEEE
T ss_pred CCCccHHHHHHHHHHHHHcCCeEEeecccccHHHHHHHHHHHHhcccccCCCCCceEEEeccCCcCcCCHHHHhccceee
Confidence 99998558999999999999999999999999999999 999984 46899999999999 99999999999999999
Q ss_pred ecCCccHHHHHHHHhcCCChhh--hccChhHHHHHHHHHHHHHHHHhhhhhccccCCccccccCHHHHHHHHHHHHHHHh
Q psy16637 161 FEPPPGIKANLLRTFSTVPATR--MMKAPNERARLYFLLAWFHAIVQERLRYVPLGWSKFYEFNESDLRVACDTLDTWID 238 (264)
Q Consensus 161 ~e~p~~lk~~l~~~~~~~~~~~--~~~~~~~~~~l~~~L~~~Hail~eR~~y~p~Gws~~Y~f~~~Dl~~~~~~l~~~~~ 238 (264)
+|||+|+|+||+++|.+ +. .+.++.++++++|+|||||||++||++|||+|||++|+||++||.+|+++|++|++
T Consensus 2500 ~EpP~Glkanl~r~~~~---~~~~~~~~~~~~~~llf~L~~fHavv~ERrkfgplGWn~~YeFn~sDl~~s~~~l~~~l~ 2576 (2695)
T 4akg_A 2500 YEDIPGILDTVKDLWGS---QFFTGKISGVWSVYCTFLLSWFHALITARTRLVPHGFSKKYYFNDCDFQFASVYLENVLA 2576 (2695)
T ss_dssp ECCCCCHHHHHHHHHHH---GGGGCCSSCHHHHHHHHHHHHHHHHHHHHHHSTTTTSSSCCCCCHHHHHHHHHHHHHHHH
T ss_pred ecCChhHHHHHHHHhhh---HHHhhccccHHHHHHHHHHHHHHHHHHHHHHhCccccCcCCCCCHhHHHHHHHHHHHHHH
Confidence 99999999999999942 22 23567789999999999999999999999999999999999999999999999998
Q ss_pred hhcCCCC-------CCCCcccCCCC
Q psy16637 239 STAMGKR-------DYAMYHSAGPS 256 (264)
Q Consensus 239 ~~~~~~~-------~~~~~~~~~~~ 256 (264)
+...... -+-+.+|||+-
T Consensus 2577 ~~~~~~ipw~~l~yl~ge~~YGGrv 2601 (2695)
T 4akg_A 2577 TNSTNNIPWAQVRDHIATIVYGGKI 2601 (2695)
T ss_dssp HSCSCSGGGHHHHHHHHHTTSTTTC
T ss_pred hcCCCCCCHHHHHHHHHHhhcCCcc
Confidence 7311111 12245799984
No 3
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=97.44 E-value=0.00087 Score=74.77 Aligned_cols=116 Identities=13% Similarity=0.261 Sum_probs=96.4
Q ss_pred CCCccEEEEeCCCCCChhHHHHHHHHhcccceEEecCCCCCHHHHHHHHHHHHHcCCeEEeccccch-hHHHHHHHHHhh
Q psy16637 50 RGNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAEGFNQADNVINVAVRSGKWVLLKNVHLA-PQWLVQLEKKLH 128 (264)
Q Consensus 50 ~~~~Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~~~~~~~a~~~l~~a~~~G~WllL~N~hL~-~~~l~~L~~~l~ 128 (264)
....|.++.-++|+.-|..+..+|+..|..+..+.-.++-......+.+..+++.|.|+++++.+.+ +..++.+.+.+.
T Consensus 643 ~~~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~~~lg~~~~g~~~~Gaw~~~DE~nr~~~evLs~l~~~l~ 722 (2695)
T 4akg_A 643 HQKYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVLSRLLVGITQIGAWGCFDEFNRLDEKVLSAVSANIQ 722 (2695)
T ss_dssp HTTCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCHHHHHHHHHHHHHHTCEEEEETTTSSCHHHHHHHHHHHH
T ss_pred HhCCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCChhHhhHHHHHHHhcCCEeeehhhhhcChHHHHHHHHHHH
Confidence 3466888899999999999999999999999999988876666677889999999999999999888 567776644432
Q ss_pred ------------------ccCCCCCceEEEecCCC----CCChHhHhhcceeeeecCCc
Q psy16637 129 ------------------SLQPHANFRLFLTMEIN----PKVPVNLLRAGRIFVFEPPP 165 (264)
Q Consensus 129 ------------------~~~~h~~FRL~lt~~~~----~~~P~~lL~~s~kv~~e~p~ 165 (264)
.+..|++|++|+|++|. ..+|.++...++.|....|.
T Consensus 723 ~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~~Fr~v~m~~Pd 781 (2695)
T 4akg_A 723 QIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKKSFREFSMKSPQ 781 (2695)
T ss_dssp HHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHTTEEEEECCCCC
T ss_pred HHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHhheEEEEeeCCC
Confidence 12469999999999864 46999999999999988664
No 4
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.30 E-value=0.02 Score=50.05 Aligned_cols=115 Identities=15% Similarity=0.117 Sum_probs=83.2
Q ss_pred CCccEEEEeCCCCCChhHHHHHHHHhcccceEEecCCCCCHHHHHHHHHHHHHcCCeEEeccccchh-HHHHHHHHHhhc
Q psy16637 51 GNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAEGFNQADNVINVAVRSGKWVLLKNVHLAP-QWLVQLEKKLHS 129 (264)
Q Consensus 51 ~~~Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~~~~~~~a~~~l~~a~~~G~WllL~N~hL~~-~~l~~L~~~l~~ 129 (264)
+..|+++.-++|+.-|.....+|+..+..+..++.+...........+..++.+|..|+|+++|..+ .....|.+.++.
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~ 116 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMED 116 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSHHHHHHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCChHHHHHHHHHhccCCCEEEEECCcccccchHHHHHHHHHh
Confidence 4468999999999999999999998887777776655444334444555556788999999998764 344455555543
Q ss_pred cC----------------CCCCceEEEecCCCCCChHhHhhcc-eeeeecCCc
Q psy16637 130 LQ----------------PHANFRLFLTMEINPKVPVNLLRAG-RIFVFEPPP 165 (264)
Q Consensus 130 ~~----------------~h~~FRL~lt~~~~~~~P~~lL~~s-~kv~~e~p~ 165 (264)
.. ..++++++.+++....+...++.++ ..+.+.+|+
T Consensus 117 ~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~ 169 (324)
T 1hqc_A 117 FVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYT 169 (324)
T ss_dssp SEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCC
T ss_pred hhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCC
Confidence 21 1257999999988888888888888 567776553
No 5
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.09 E-value=0.028 Score=49.39 Aligned_cols=108 Identities=10% Similarity=0.137 Sum_probs=79.4
Q ss_pred EEEEeCCCCCChhHHHHHHHHhcccceEEecCCCCCHHHHHHHHHHHHH------cCCeEEeccccchh--HHHHHHHHH
Q psy16637 55 AVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAEGFNQADNVINVAVR------SGKWVLLKNVHLAP--QWLVQLEKK 126 (264)
Q Consensus 55 ii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~~~~~~~a~~~l~~a~~------~G~WllL~N~hL~~--~~l~~L~~~ 126 (264)
+++.-++|..-|..+..+|+..+..+..++-.. .+....+..+..... ++.-|+|+++|... .....|.+.
T Consensus 51 ~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~-~~~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~ 129 (324)
T 3u61_B 51 ILHSPSPGTGKTTVAKALCHDVNADMMFVNGSD-CKIDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSF 129 (324)
T ss_dssp EEECSSTTSSHHHHHHHHHHHTTEEEEEEETTT-CCHHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHH
T ss_pred EEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccc-cCHHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHH
Confidence 344444899999999999999987777777443 334556666666554 45788999998764 344455555
Q ss_pred hhccCCCCCceEEEecCCCCCChHhHhhcceeeeecCCc
Q psy16637 127 LHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPP 165 (264)
Q Consensus 127 l~~~~~h~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p~ 165 (264)
++.. .++.++.++++....++..+..+|..+.+.+|+
T Consensus 130 le~~--~~~~~iI~~~n~~~~l~~~l~sR~~~i~~~~~~ 166 (324)
T 3u61_B 130 MEAY--SSNCSIIITANNIDGIIKPLQSRCRVITFGQPT 166 (324)
T ss_dssp HHHH--GGGCEEEEEESSGGGSCTTHHHHSEEEECCCCC
T ss_pred HHhC--CCCcEEEEEeCCccccCHHHHhhCcEEEeCCCC
Confidence 5532 356799999998889999999999999888776
No 6
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.93 E-value=0.058 Score=61.22 Aligned_cols=114 Identities=15% Similarity=0.281 Sum_probs=89.4
Q ss_pred CccEEEEeCCCCCChhHHHHHHHHhcccceEEecCCCCCHHHHHHHHHHHHHcCCeEEeccccch-hHHHHHHHHHhh--
Q psy16637 52 NVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAEGFNQADNVINVAVRSGKWVLLKNVHLA-PQWLVQLEKKLH-- 128 (264)
Q Consensus 52 ~~Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~~~~~~~a~~~l~~a~~~G~WllL~N~hL~-~~~l~~L~~~l~-- 128 (264)
..+....-++|..-|..+..||+..|..+.+++-..+-.....-+.+.-+++.|.|.++++.+-. ...++.+.+.+.
T Consensus 604 ~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~~~~g~i~~G~~~~GaW~cfDEfNrl~~~vLSvv~~qi~~I 683 (3245)
T 3vkg_A 604 RMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQAMSRIFVGLCQCGAWGCFDEFNRLEERILSAVSQQIQTI 683 (3245)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHHHTCEEEEETTTSSCHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHhhHhhcCcEEEehhhhcCCHHHHHHHHHHHHHH
Confidence 34555667889999999999999999988888877766544555677889999999999999776 566665544332
Q ss_pred -----------------ccCCCCCceEEEecCCC----CCChHhHhhcceeeeecCCc
Q psy16637 129 -----------------SLQPHANFRLFLTMEIN----PKVPVNLLRAGRIFVFEPPP 165 (264)
Q Consensus 129 -----------------~~~~h~~FRL~lt~~~~----~~~P~~lL~~s~kv~~e~p~ 165 (264)
.++.+++|++|+|++|. ..+|..+....+.|....|.
T Consensus 684 ~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~lFr~v~m~~Pd 741 (3245)
T 3vkg_A 684 QVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLFRSMAMIKPD 741 (3245)
T ss_dssp HHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHTTEEEEECCSCC
T ss_pred HHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHhhcEEEEEeCCC
Confidence 13468999999999864 57999999999999888663
No 7
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.87 E-value=0.19 Score=40.27 Aligned_cols=110 Identities=15% Similarity=0.227 Sum_probs=75.6
Q ss_pred cEEEEeCCCCCChhHHHHHHHHhc-----ccceEEecCCCCCHHHHHHHHHHHH-------HcCCeEEeccccch-hHHH
Q psy16637 54 PAVLCSVPGYDASGRVDDLAAELG-----KQIASIAIGSAEGFNQADNVINVAV-------RSGKWVLLKNVHLA-PQWL 120 (264)
Q Consensus 54 Pii~i~s~g~DP~~~i~~lA~~~~-----~~~~~islG~~~~~~~a~~~l~~a~-------~~G~WllL~N~hL~-~~~l 120 (264)
++++.-++|+.-|..+..+++... ..+..++-+...+.......+.... .++..|+|+++|.. ....
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~ 119 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQ 119 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHhcccCCCccCceEEEEeChhhcCHHHH
Confidence 588888999999999999988642 2344455444444334444555443 34567889999876 4445
Q ss_pred HHHHHHhhccCCCCCceEEEecCCCCCChHhHhhcceeeeecCCc
Q psy16637 121 VQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPP 165 (264)
Q Consensus 121 ~~L~~~l~~~~~h~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p~ 165 (264)
..|.+.++. .+.+.+++++++....+...+..++..+.+.+++
T Consensus 120 ~~l~~~l~~--~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~ 162 (226)
T 2chg_A 120 AALRRTMEM--YSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVP 162 (226)
T ss_dssp HHHHHHHHH--TTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCC
T ss_pred HHHHHHHHh--cCCCCeEEEEeCChhhcCHHHHHhCceeecCCCC
Confidence 556666654 3567899999887778888899988877777654
No 8
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.59 E-value=0.12 Score=45.55 Aligned_cols=114 Identities=12% Similarity=0.100 Sum_probs=83.0
Q ss_pred CCCccEEEEeCCCCCChhHHHHHHHHhcccceEEecCCCCCHHHHHHHHHHHHHcCCeEEeccccch-hHHHHHHHHHhh
Q psy16637 50 RGNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAEGFNQADNVINVAVRSGKWVLLKNVHLA-PQWLVQLEKKLH 128 (264)
Q Consensus 50 ~~~~Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~~~~~~~a~~~l~~a~~~G~WllL~N~hL~-~~~l~~L~~~l~ 128 (264)
.+..++++.-++|+.-|.....+|+..+..+..++-+...........+. ...+|..|+|+++|.. ......|-+.++
T Consensus 53 ~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~ 131 (338)
T 3pfi_A 53 ECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEKSGDLAAILT-NLSEGDILFIDEIHRLSPAIEEVLYPAME 131 (338)
T ss_dssp SCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCSHHHHHHHHH-TCCTTCEEEEETGGGCCHHHHHHHHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccchhHHHHHHH-hccCCCEEEEechhhcCHHHHHHHHHHHH
Confidence 34457889999999999999999999887777776655444333333333 3457899999999865 566666766665
Q ss_pred ccC----------------CCCCceEEEecCCCCCChHhHhhcc-eeeeecCC
Q psy16637 129 SLQ----------------PHANFRLFLTMEINPKVPVNLLRAG-RIFVFEPP 164 (264)
Q Consensus 129 ~~~----------------~h~~FRL~lt~~~~~~~P~~lL~~s-~kv~~e~p 164 (264)
... ..++|+++.+++....++..++.++ ..+.+.+|
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~ 184 (338)
T 3pfi_A 132 DYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFY 184 (338)
T ss_dssp TSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCC
T ss_pred hccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCc
Confidence 421 1236999999998888999999998 67777765
No 9
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=94.72 E-value=0.065 Score=46.34 Aligned_cols=110 Identities=15% Similarity=0.240 Sum_probs=73.4
Q ss_pred cEEEEeCCCCCChhHHHHHHHHh-----cccceEEecCCCCCHHHHHHHHHHHH-------HcCCeEEeccccchh-HHH
Q psy16637 54 PAVLCSVPGYDASGRVDDLAAEL-----GKQIASIAIGSAEGFNQADNVINVAV-------RSGKWVLLKNVHLAP-QWL 120 (264)
Q Consensus 54 Pii~i~s~g~DP~~~i~~lA~~~-----~~~~~~islG~~~~~~~a~~~l~~a~-------~~G~WllL~N~hL~~-~~l 120 (264)
++++.-++|+.-|..+..+|+.. +..+..+..+...+.......+.... .++..|+|+++|... .-.
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~ 119 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQ 119 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHH
Confidence 48888888999999999999875 22344555443322223333444433 235788999998764 333
Q ss_pred HHHHHHhhccCCCCCceEEEecCCCCCChHhHhhcceeeeecCCc
Q psy16637 121 VQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPP 165 (264)
Q Consensus 121 ~~L~~~l~~~~~h~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p~ 165 (264)
..|.+.++ ++.++.+++++++....++..+..+|..+.+.+|+
T Consensus 120 ~~L~~~le--~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~ 162 (319)
T 2chq_A 120 AALRRTME--MYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVP 162 (319)
T ss_dssp HTTGGGTS--SSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCC
T ss_pred HHHHHHHH--hcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCC
Confidence 33433333 34578899999988778999999999988888654
No 10
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.61 E-value=0.27 Score=42.40 Aligned_cols=109 Identities=17% Similarity=0.191 Sum_probs=75.1
Q ss_pred EEEEeCCCCCChhHHHHHHHHhc-----ccceEEecCCCCCHHHHHHHHHHHH-------H-cCCeEEeccccch-hHHH
Q psy16637 55 AVLCSVPGYDASGRVDDLAAELG-----KQIASIAIGSAEGFNQADNVINVAV-------R-SGKWVLLKNVHLA-PQWL 120 (264)
Q Consensus 55 ii~i~s~g~DP~~~i~~lA~~~~-----~~~~~islG~~~~~~~a~~~l~~a~-------~-~G~WllL~N~hL~-~~~l 120 (264)
+++.-++|..-|..+..+|+... ..+..+.-+...+....+..++... . +...|+|+++|.. ..-.
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~ 124 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQ 124 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHHHH
Confidence 77788889999999999998752 2234444443334445556666554 2 2457888999875 3344
Q ss_pred HHHHHHhhccCCCCCceEEEecCCCCCChHhHhhcceeeeecCCc
Q psy16637 121 VQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPP 165 (264)
Q Consensus 121 ~~L~~~l~~~~~h~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p~ 165 (264)
..|.+.++. +.++.+++++++....++..+..+|..+.+.+++
T Consensus 125 ~~L~~~le~--~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~ 167 (323)
T 1sxj_B 125 QALRRTMEL--YSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLS 167 (323)
T ss_dssp HTTHHHHHH--TTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCC
T ss_pred HHHHHHHhc--cCCCceEEEEeCChhhchhHHHhhceEEeecCCC
Confidence 455555553 4567899999988778899999999988888754
No 11
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.57 E-value=0.34 Score=39.23 Aligned_cols=111 Identities=18% Similarity=0.228 Sum_probs=71.9
Q ss_pred ccEEEEeCCCCCChhHHHHHHHHhccc------------------------ceEEecCCCCCHHHHHHHHHHHH-----H
Q psy16637 53 VPAVLCSVPGYDASGRVDDLAAELGKQ------------------------IASIAIGSAEGFNQADNVINVAV-----R 103 (264)
Q Consensus 53 ~Pii~i~s~g~DP~~~i~~lA~~~~~~------------------------~~~islG~~~~~~~a~~~l~~a~-----~ 103 (264)
.++++.-++|+.-|..+..+++..+.. +..+.-............++.+. .
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 125 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcC
Confidence 367888889999999999998876421 11122121112223333444322 1
Q ss_pred cCCeEEeccccch-hHHHHHHHHHhhccCCCCCceEEEecCCCCCChHhHhhcceeeeecCCc
Q psy16637 104 SGKWVLLKNVHLA-PQWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPP 165 (264)
Q Consensus 104 ~G~WllL~N~hL~-~~~l~~L~~~l~~~~~h~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p~ 165 (264)
+...|+|+++|.. ......|.+.++. ...+.+++++++....++..+..++..+.+.+++
T Consensus 126 ~~~vlviDe~~~l~~~~~~~l~~~l~~--~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~ 186 (250)
T 1njg_A 126 RFKVYLIDEVHMLSRHSFNALLKTLEE--PPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 186 (250)
T ss_dssp SSEEEEEETGGGSCHHHHHHHHHHHHS--CCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCC
T ss_pred CceEEEEECcccccHHHHHHHHHHHhc--CCCceEEEEEeCChHhCCHHHHHHhhhccCCCCC
Confidence 2468899999865 5566666666653 3567889999887778888899988888887654
No 12
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.52 E-value=0.52 Score=41.70 Aligned_cols=118 Identities=21% Similarity=0.258 Sum_probs=79.4
Q ss_pred cEEEEeCCCCCChhHHHHHHHHhcc------------------------cceEEecC---CCCCHHHHHHHHHHHHHc--
Q psy16637 54 PAVLCSVPGYDASGRVDDLAAELGK------------------------QIASIAIG---SAEGFNQADNVINVAVRS-- 104 (264)
Q Consensus 54 Pii~i~s~g~DP~~~i~~lA~~~~~------------------------~~~~islG---~~~~~~~a~~~l~~a~~~-- 104 (264)
.++|.-++|..-+.....+|+.... .+..+.-. ..-+.+.++.+++.+...
T Consensus 26 a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~~~i~~ir~l~~~~~~~~~ 105 (334)
T 1a5t_A 26 ALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNEHAR 105 (334)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCHHHHHHHHHHTTSCCT
T ss_pred eEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCCCCHHHHHHHHHHHhhccc
Confidence 3777888899999999999987531 23334332 233455666777665432
Q ss_pred -C--CeEEeccccch-hHHHHHHHHHhhccCCCCCceEEEecCCCCCChHhHhhcceeeeecCCcc--HHHHHHH
Q psy16637 105 -G--KWVLLKNVHLA-PQWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPPG--IKANLLR 173 (264)
Q Consensus 105 -G--~WllL~N~hL~-~~~l~~L~~~l~~~~~h~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p~~--lk~~l~~ 173 (264)
| .-++++++|.. ..-.+.|-+.++ ++.++..++++++....++..+..+|.++.+.+|+. +++.+.+
T Consensus 106 ~~~~kvviIdead~l~~~a~naLLk~lE--ep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~ 178 (334)
T 1a5t_A 106 LGGAKVVWVTDAALLTDAAANALLKTLE--EPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSR 178 (334)
T ss_dssp TSSCEEEEESCGGGBCHHHHHHHHHHHT--SCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHH
T ss_pred cCCcEEEEECchhhcCHHHHHHHHHHhc--CCCCCeEEEEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHH
Confidence 3 45677999876 455566766666 345677888888776789999999999999986543 3444443
No 13
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.24 E-value=0.6 Score=38.99 Aligned_cols=113 Identities=15% Similarity=0.098 Sum_probs=72.2
Q ss_pred CCccEEEEeCCCCCChhHHHHHHHHhcccceEEecCCC------CCHHHHHHHHHHHHHc-CCeEEeccccchh------
Q psy16637 51 GNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSA------EGFNQADNVINVAVRS-GKWVLLKNVHLAP------ 117 (264)
Q Consensus 51 ~~~Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~~------~~~~~a~~~l~~a~~~-G~WllL~N~hL~~------ 117 (264)
+..++++.-+||+.-|.....+|+..+..+..++...- +........++.+... +.-|+|+++|...
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~ 117 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTT 117 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTHHHHHHHHHHHHHHHTCSEEEEEECC----------
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhcccccc
Confidence 45589999999999999999999998877776665432 1113445566666654 5678889998641
Q ss_pred ----------HHHHHHHHHhhccCCCCCceEEEecCCCCCChHhHhh--cc-eeeeecC
Q psy16637 118 ----------QWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLR--AG-RIFVFEP 163 (264)
Q Consensus 118 ----------~~l~~L~~~l~~~~~h~~FRL~lt~~~~~~~P~~lL~--~s-~kv~~e~ 163 (264)
..+..+-..+.......+.+++.+++....++..++. +. ..+.+..
T Consensus 118 ~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~ 176 (262)
T 2qz4_A 118 MSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDL 176 (262)
T ss_dssp ---------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCS
T ss_pred ccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCC
Confidence 1223333333333445678888888877778778876 55 3444443
No 14
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=93.93 E-value=0.67 Score=39.44 Aligned_cols=115 Identities=11% Similarity=0.145 Sum_probs=76.6
Q ss_pred CCCccEEEEeCCCCCChhHHHHHHHHhcccceEEecCCC----CC--HHHHHHHHHHHHHcC-CeEEeccccch------
Q psy16637 50 RGNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSA----EG--FNQADNVINVAVRSG-KWVLLKNVHLA------ 116 (264)
Q Consensus 50 ~~~~Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~~----~~--~~~a~~~l~~a~~~G-~WllL~N~hL~------ 116 (264)
.+..++++.-+||+.-|..+..+|+..+..+..++...- .+ .......+..+...+ ..|+|+++|..
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~ 128 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTD 128 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSS
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCcc
Confidence 355679999999999999999999998877766654331 11 123344555555543 58889999764
Q ss_pred ------hHHHHHHHHHhhc---cCCCCCceEEEecCCCCCChHhHhh--cce-eeeecCC
Q psy16637 117 ------PQWLVQLEKKLHS---LQPHANFRLFLTMEINPKVPVNLLR--AGR-IFVFEPP 164 (264)
Q Consensus 117 ------~~~l~~L~~~l~~---~~~h~~FRL~lt~~~~~~~P~~lL~--~s~-kv~~e~p 164 (264)
......+...+.. .....+++++.|++....++..++. +.- .+.+..|
T Consensus 129 ~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p 188 (285)
T 3h4m_A 129 ALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAP 188 (285)
T ss_dssp SCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCC
T ss_pred ccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCC
Confidence 2233344444433 3556789999999888889888887 443 4444433
No 15
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=92.98 E-value=1.7 Score=39.02 Aligned_cols=114 Identities=15% Similarity=0.115 Sum_probs=75.3
Q ss_pred CCccEEEEeCCCCCChhHHHHHHHHhcccceEEecCCC------CCHHHHHHHHHHHHHcC-CeEEeccccch-------
Q psy16637 51 GNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSA------EGFNQADNVINVAVRSG-KWVLLKNVHLA------- 116 (264)
Q Consensus 51 ~~~Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~~------~~~~~a~~~l~~a~~~G-~WllL~N~hL~------- 116 (264)
+..+++|.-++|+.-|..+..+|...+..+..++.+.- +.......++..|...+ .-|+|+++|..
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~ 226 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREG 226 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC------
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCc
Confidence 44689999999999999999999998877777765432 22223455666666544 68999999754
Q ss_pred -----hHHHHHHHHHhhccC--CCCCceEEEecCCCCCChHhHhhccee-eeecCC
Q psy16637 117 -----PQWLVQLEKKLHSLQ--PHANFRLFLTMEINPKVPVNLLRAGRI-FVFEPP 164 (264)
Q Consensus 117 -----~~~l~~L~~~l~~~~--~h~~FRL~lt~~~~~~~P~~lL~~s~k-v~~e~p 164 (264)
......|...++... ...+++++.+++....++..++.++.. +.+..|
T Consensus 227 ~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p 282 (389)
T 3vfd_A 227 EHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLP 282 (389)
T ss_dssp --CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTCCEEEECCCC
T ss_pred cchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCc
Confidence 122223333333332 356788888888877899999998854 555443
No 16
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=92.88 E-value=0.83 Score=40.24 Aligned_cols=119 Identities=18% Similarity=0.229 Sum_probs=77.1
Q ss_pred ccEEEEeCCCCCChhHHHHHHHHhcc------------------------cceEEecCCCCCHHHHHHHHHHHHH-----
Q psy16637 53 VPAVLCSVPGYDASGRVDDLAAELGK------------------------QIASIAIGSAEGFNQADNVINVAVR----- 103 (264)
Q Consensus 53 ~Pii~i~s~g~DP~~~i~~lA~~~~~------------------------~~~~islG~~~~~~~a~~~l~~a~~----- 103 (264)
.++++.-++|+.-|..+..+|+..+. .+..+.-+...+.+..+.+++.+..
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 118 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEecccccCCHHHHHHHHHHHhhccccC
Confidence 35788888999999999999987642 1222322221222334555555432
Q ss_pred cCCeEEeccccch-hHHHHHHHHHhhccCCCCCceEEEecCCCCCChHhHhhcceeeeecCCc--cHHHHHHH
Q psy16637 104 SGKWVLLKNVHLA-PQWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPP--GIKANLLR 173 (264)
Q Consensus 104 ~G~WllL~N~hL~-~~~l~~L~~~l~~~~~h~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p~--~lk~~l~~ 173 (264)
+..-|+++++|.. ......|.+.++. +.++.+++++++..+.++..+..+|..+.+.+++ .++..+.+
T Consensus 119 ~~~vliiDe~~~l~~~~~~~Ll~~le~--~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~ 189 (373)
T 1jr3_A 119 RFKVYLIDEVHMLSRHSFNALLKTLEE--PPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEH 189 (373)
T ss_dssp SSEEEEEECGGGSCHHHHHHHHHHHHS--CCSSEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHH
T ss_pred CeEEEEEECcchhcHHHHHHHHHHHhc--CCCceEEEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHH
Confidence 2357888999865 4555666666653 4567788888876678888999999988888654 23444443
No 17
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=92.36 E-value=0.81 Score=39.36 Aligned_cols=110 Identities=18% Similarity=0.217 Sum_probs=72.2
Q ss_pred cEEEEeCCCCCChhHHHHHHHHhcc-----cceEEecCCCCCHHHHHHHHHHHH-------HcCCeEEeccccch-hHHH
Q psy16637 54 PAVLCSVPGYDASGRVDDLAAELGK-----QIASIAIGSAEGFNQADNVINVAV-------RSGKWVLLKNVHLA-PQWL 120 (264)
Q Consensus 54 Pii~i~s~g~DP~~~i~~lA~~~~~-----~~~~islG~~~~~~~a~~~l~~a~-------~~G~WllL~N~hL~-~~~l 120 (264)
++++.-++|+.-|..+..+|+.... .+..+.-+...+.......+.... .++.-|+++++|.. ....
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~ 127 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQ 127 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHH
Confidence 5788888899999999999987531 233443322211122223333332 23567888999866 4455
Q ss_pred HHHHHHhhccCCCCCceEEEecCCCCCChHhHhhcceeeeecCCc
Q psy16637 121 VQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPP 165 (264)
Q Consensus 121 ~~L~~~l~~~~~h~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p~ 165 (264)
..|.+.++. ..++.++.++++..+.++..+..+|..+.+.+++
T Consensus 128 ~~L~~~le~--~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~ 170 (327)
T 1iqp_A 128 QALRRTMEM--FSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLR 170 (327)
T ss_dssp HHHHHHHHH--TTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCC
T ss_pred HHHHHHHHh--cCCCCeEEEEeCCccccCHHHHhhCcEEEecCCC
Confidence 566666654 3467789999887778888999999988887654
No 18
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=92.24 E-value=0.71 Score=42.87 Aligned_cols=132 Identities=14% Similarity=0.193 Sum_probs=85.9
Q ss_pred CChhHHhhhhcCCCccEEEEeCCCCCChhHHHHHHHHhcccceEEecCCCCCHHHHHHHHHHHH-----HcCCeEEeccc
Q psy16637 39 LDLPHIVEHELRGNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAEGFNQADNVINVAV-----RSGKWVLLKNV 113 (264)
Q Consensus 39 ~~L~~~~~~~s~~~~Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~~~~~~~a~~~l~~a~-----~~G~WllL~N~ 113 (264)
-.|...+. .....+++|.-+||+.-|.....+|+..+..+..++... .+....+..+..+. .++.-|+|+++
T Consensus 39 ~~L~~~i~--~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~-~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI 115 (447)
T 3pvs_A 39 KPLPRAIE--AGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVT-SGVKEIREAIERARQNRNAGRRTILFVDEV 115 (447)
T ss_dssp SHHHHHHH--HTCCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT-CCHHHHHHHHHHHHHHHHTTCCEEEEEETT
T ss_pred HHHHHHHH--cCCCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc-CCHHHHHHHHHHHHHhhhcCCCcEEEEeCh
Confidence 34555664 223347888999999999999999999887776666433 33455666666655 35789999999
Q ss_pred cchh-HHHHHHHHHhhccCCCCCceEEEecCCC--CCChHhHhhcceeeeecCCc--cHHHHHHHHhcC
Q psy16637 114 HLAP-QWLVQLEKKLHSLQPHANFRLFLTMEIN--PKVPVNLLRAGRIFVFEPPP--GIKANLLRTFST 177 (264)
Q Consensus 114 hL~~-~~l~~L~~~l~~~~~h~~FRL~lt~~~~--~~~P~~lL~~s~kv~~e~p~--~lk~~l~~~~~~ 177 (264)
|... .-...|-+.++. ...+++.++... ..++..++.+|..+.+.+++ .++..+.+....
T Consensus 116 ~~l~~~~q~~LL~~le~----~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~ 180 (447)
T 3pvs_A 116 HRFNKSQQDAFLPHIED----GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMED 180 (447)
T ss_dssp TCC------CCHHHHHT----TSCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHC
T ss_pred hhhCHHHHHHHHHHHhc----CceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHH
Confidence 8763 222333344442 456777665333 37899999999999888754 345555555443
No 19
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=92.23 E-value=2.4 Score=36.65 Aligned_cols=116 Identities=13% Similarity=0.180 Sum_probs=77.5
Q ss_pred CCCccEEEEeCCCCCChhHHHHHHHHhcccceEEec--------CCCCCHHHHHHHHHHHHHc-CCeEEeccccchh---
Q psy16637 50 RGNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAI--------GSAEGFNQADNVINVAVRS-GKWVLLKNVHLAP--- 117 (264)
Q Consensus 50 ~~~~Pii~i~s~g~DP~~~i~~lA~~~~~~~~~isl--------G~~~~~~~a~~~l~~a~~~-G~WllL~N~hL~~--- 117 (264)
.+..++++.-++|+.-|.....+|...+..+..++. |..+ .....+++.|... ..-|+|++++...
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~g~~~--~~~~~~f~~a~~~~p~il~iDEid~l~~~~ 124 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESE--ANVREIFDKARQAAPCVLFFDELDSIAKAR 124 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHHTTCT--THHHHHHHHHHHTCSEEEEECSTTHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhcCchH--HHHHHHHHHHHhcCCeEEEEEChHHHhhcc
Confidence 345679999999999999999999988766655542 3332 3556777777654 4678889987432
Q ss_pred ------------HHHHHHHHHhhccCCCCCceEEEecCCCCCChHhHhh--cceeeeecCCccH
Q psy16637 118 ------------QWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLR--AGRIFVFEPPPGI 167 (264)
Q Consensus 118 ------------~~l~~L~~~l~~~~~h~~FRL~lt~~~~~~~P~~lL~--~s~kv~~e~p~~l 167 (264)
..+..|-..++......+.+++.+++....++..++. +..++.+=++++.
T Consensus 125 ~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~ 188 (301)
T 3cf0_A 125 GGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 188 (301)
T ss_dssp TTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCH
T ss_pred CCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCH
Confidence 1234455555555556788888888877778888876 4433333333343
No 20
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=92.12 E-value=1.6 Score=37.79 Aligned_cols=101 Identities=12% Similarity=0.033 Sum_probs=66.0
Q ss_pred cEEEEeCCCCCChhHHHHHHHHhcccceEEecCCC------CCHHHHHHHHHHH-----HHcCCeEEeccccchh-----
Q psy16637 54 PAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSA------EGFNQADNVINVA-----VRSGKWVLLKNVHLAP----- 117 (264)
Q Consensus 54 Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~~------~~~~~a~~~l~~a-----~~~G~WllL~N~hL~~----- 117 (264)
-+++.-+||+.-|.....+|+..+.++..++.++- +........++.| ...+.-|+|++++-..
T Consensus 38 ~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~~~~~ 117 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGG 117 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCCC
Confidence 36666899999999999999999988888876542 1112344556666 2356788899985432
Q ss_pred ---------HHHHHHHHHhhcc-----------CCCCCceEEEecCCCCCChHhHhh
Q psy16637 118 ---------QWLVQLEKKLHSL-----------QPHANFRLFLTMEINPKVPVNLLR 154 (264)
Q Consensus 118 ---------~~l~~L~~~l~~~-----------~~h~~FRL~lt~~~~~~~P~~lL~ 154 (264)
.+...|-+.++.. ....+..+++|++....+|..+++
T Consensus 118 ~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R 174 (293)
T 3t15_A 118 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIR 174 (293)
T ss_dssp ------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHH
T ss_pred CccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhC
Confidence 1334555555422 134567888889888889999886
No 21
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=91.56 E-value=2.5 Score=37.58 Aligned_cols=117 Identities=13% Similarity=0.147 Sum_probs=76.1
Q ss_pred CCccEEEEeCCCCCChhHHHHHHHHhcccceEEecCC------CCCHHHHHHHHHHHHH-cCCeEEeccccchh------
Q psy16637 51 GNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGS------AEGFNQADNVINVAVR-SGKWVLLKNVHLAP------ 117 (264)
Q Consensus 51 ~~~Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~------~~~~~~a~~~l~~a~~-~G~WllL~N~hL~~------ 117 (264)
+..++++.-+||+.-|.....+|+..+..+..++... ++.......++..|.. .+.-|+|++++...
T Consensus 83 ~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~ 162 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG 162 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC-----
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCC
Confidence 3446999999999999999999999887776665421 2222345556666654 45688899998542
Q ss_pred ------HHHHHHHHHhhccC-CCCCceEEEecCCCCCChHhHhhcceeeeecCCccH
Q psy16637 118 ------QWLVQLEKKLHSLQ-PHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPPGI 167 (264)
Q Consensus 118 ------~~l~~L~~~l~~~~-~h~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p~~l 167 (264)
.....|-..+.... ...+..++.+++....++..++.++.+..+=++++.
T Consensus 163 ~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~ 219 (355)
T 2qp9_X 163 ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDL 219 (355)
T ss_dssp -CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCH
T ss_pred cchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCH
Confidence 12333434444332 356778888888777899999998855444444444
No 22
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=91.32 E-value=7 Score=34.16 Aligned_cols=116 Identities=13% Similarity=0.120 Sum_probs=76.7
Q ss_pred CCccEEEEeCCCCCChhHHHHHHHHh-cccceEEecCC------CCCHHHHHHHHHHHHHc-CCeEEeccccchh-----
Q psy16637 51 GNVPAVLCSVPGYDASGRVDDLAAEL-GKQIASIAIGS------AEGFNQADNVINVAVRS-GKWVLLKNVHLAP----- 117 (264)
Q Consensus 51 ~~~Pii~i~s~g~DP~~~i~~lA~~~-~~~~~~islG~------~~~~~~a~~~l~~a~~~-G~WllL~N~hL~~----- 117 (264)
+..++++.-+||+.-|.....+|+.. +..+..++... ++.....+.+++.|... ...|+|+++|...
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~ 123 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSE 123 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSS
T ss_pred CCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhcccccc
Confidence 44579999999999999999999987 66666665432 23334556667766654 4688889987541
Q ss_pred -------HHHHHHHHHhhccC-CCCCceEEEecCCCCCChHhHhhcceeeeecCCcc
Q psy16637 118 -------QWLVQLEKKLHSLQ-PHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPPG 166 (264)
Q Consensus 118 -------~~l~~L~~~l~~~~-~h~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p~~ 166 (264)
..+..|...++... ...+..++.+++....++..+++++-+..+=++++
T Consensus 124 ~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~ 180 (322)
T 1xwi_A 124 NESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPE 180 (322)
T ss_dssp CCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCC
T ss_pred ccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcC
Confidence 12233333333333 35677888888888889999999885444433333
No 23
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=91.03 E-value=1.5 Score=33.88 Aligned_cols=111 Identities=15% Similarity=0.227 Sum_probs=68.2
Q ss_pred CCccEEEEeCCCCCChhHHHHHHHHh----------cccceEEecCCC----CCH----HHHHHHHHHHHHc--CCeEEe
Q psy16637 51 GNVPAVLCSVPGYDASGRVDDLAAEL----------GKQIASIAIGSA----EGF----NQADNVINVAVRS--GKWVLL 110 (264)
Q Consensus 51 ~~~Pii~i~s~g~DP~~~i~~lA~~~----------~~~~~~islG~~----~~~----~~a~~~l~~a~~~--G~WllL 110 (264)
...++++.-++|+.-|..+..+|+.. +..+..++.+.. ... ......++.+.+. +..|+|
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~i 121 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFI 121 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEE
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 34578888899999999999999875 334444443221 111 1233444444333 336899
Q ss_pred ccccchh---------HHHHHHHHHhhccCCCCCceEEEecCCCC-----CChHhHhhcceeeeecCCc
Q psy16637 111 KNVHLAP---------QWLVQLEKKLHSLQPHANFRLFLTMEINP-----KVPVNLLRAGRIFVFEPPP 165 (264)
Q Consensus 111 ~N~hL~~---------~~l~~L~~~l~~~~~h~~FRL~lt~~~~~-----~~P~~lL~~s~kv~~e~p~ 165 (264)
+++|... .....|...++ +.+++++++++... .++..+..++..+.+++|+
T Consensus 122 De~~~l~~~~~~~~~~~~~~~l~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~l~~r~~~i~~~~p~ 186 (195)
T 1jbk_A 122 DELHTMVGAGKADGAMDAGNMLKPALA----RGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPS 186 (195)
T ss_dssp ETGGGGTT------CCCCHHHHHHHHH----TTSCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCCC
T ss_pred eCHHHHhccCcccchHHHHHHHHHhhc----cCCeEEEEeCCHHHHHHHHhcCHHHHHHhceeecCCCC
Confidence 9998652 12233333332 35678888876654 5778889888877777653
No 24
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=90.75 E-value=5.6 Score=33.08 Aligned_cols=113 Identities=14% Similarity=0.182 Sum_probs=71.8
Q ss_pred CccEEEEeCCCCCChhHHHHHHHHhcccceEEecCC------CCCHHHHHHHHHHHHHcC-CeEEeccccchh-------
Q psy16637 52 NVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGS------AEGFNQADNVINVAVRSG-KWVLLKNVHLAP------- 117 (264)
Q Consensus 52 ~~Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~------~~~~~~a~~~l~~a~~~G-~WllL~N~hL~~------- 117 (264)
..+++++-++|+.-|.....+|...+..+..++... ++........++.|.... .-++++++|...
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~ 124 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGL 124 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTS
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCc
Confidence 447899999999999999999998876665554322 222234556677776543 478889984321
Q ss_pred --------HHHHHHHHHhhccCCCCCceEEEecCCCCCChHhHhh--c-ceeeeecCC
Q psy16637 118 --------QWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLR--A-GRIFVFEPP 164 (264)
Q Consensus 118 --------~~l~~L~~~l~~~~~h~~FRL~lt~~~~~~~P~~lL~--~-s~kv~~e~p 164 (264)
..+..+-+.++......+.+++.+++....++..++. + ...+.+..|
T Consensus 125 ~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P 182 (257)
T 1lv7_A 125 GGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLP 182 (257)
T ss_dssp CCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCC
T ss_pred CCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCC
Confidence 1233333334444456778888888877778878775 2 234555444
No 25
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=90.57 E-value=2.5 Score=35.52 Aligned_cols=111 Identities=16% Similarity=0.117 Sum_probs=69.5
Q ss_pred CCccEEEEeCCCCCChhHHHHHHHHhc---ccceEEecCCCCCHHHHHHHHH-----------------HHHHcCCeEEe
Q psy16637 51 GNVPAVLCSVPGYDASGRVDDLAAELG---KQIASIAIGSAEGFNQADNVIN-----------------VAVRSGKWVLL 110 (264)
Q Consensus 51 ~~~Pii~i~s~g~DP~~~i~~lA~~~~---~~~~~islG~~~~~~~a~~~l~-----------------~a~~~G~WllL 110 (264)
...|+++.-++|+.-+.....+++... ..+..++.+.-.. +..+..+- -...+|+.|+|
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~g~~~~~~~g~~~~~~~~l~~a~~~~l~l 106 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE-NLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFL 106 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCH-HHHHHHHHCCC---------CCCCHHHHTTTSEEEE
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCCh-hHHHHHhcCCcccccccccccccchhhhcCCcEEEE
Confidence 356999999999999988888887643 3566676554321 12221110 01235789999
Q ss_pred ccccchh-HHHHHHHHHhhcc---------CCCCCceEEEecCCC-------CCChHhHhhcceeeeec
Q psy16637 111 KNVHLAP-QWLVQLEKKLHSL---------QPHANFRLFLTMEIN-------PKVPVNLLRAGRIFVFE 162 (264)
Q Consensus 111 ~N~hL~~-~~l~~L~~~l~~~---------~~h~~FRL~lt~~~~-------~~~P~~lL~~s~kv~~e 162 (264)
+++|..+ .....|-+.++.. ..+.++|+++++++. ..|...++.+.-.+.++
T Consensus 107 DEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~~~i~ 175 (265)
T 2bjv_A 107 DELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDALAFDVVQ 175 (265)
T ss_dssp ESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHHHHHCSEEEE
T ss_pred echHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHHcCCccHHHHHhhcCcEEe
Confidence 9998764 4445566666532 124689999999875 24666777665333443
No 26
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=90.53 E-value=2.4 Score=37.14 Aligned_cols=119 Identities=11% Similarity=0.057 Sum_probs=78.6
Q ss_pred cc-EEEEeCCCCCChhHHHHHHHHh------cccceEEecCC-CCCHHHHHHHHHHHHHc---C--CeEEeccccchh-H
Q psy16637 53 VP-AVLCSVPGYDASGRVDDLAAEL------GKQIASIAIGS-AEGFNQADNVINVAVRS---G--KWVLLKNVHLAP-Q 118 (264)
Q Consensus 53 ~P-ii~i~s~g~DP~~~i~~lA~~~------~~~~~~islG~-~~~~~~a~~~l~~a~~~---G--~WllL~N~hL~~-~ 118 (264)
.| .+|.-++|..-+.....+|+.. ...+..+.-.. .-+.+.++.+++.+... | .-++++++|... .
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~~~~~kvviIdead~lt~~ 97 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQ 97 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhccccCCceEEEeccHHHhCHH
Confidence 45 5556677887778888888763 23455565432 34556778888887643 2 466779999873 3
Q ss_pred HHHHHHHHhhccCCCCCceEEEecCCCCCChHhHhhcceeeeecC--CccHHHHHHHHh
Q psy16637 119 WLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEP--PPGIKANLLRTF 175 (264)
Q Consensus 119 ~l~~L~~~l~~~~~h~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~--p~~lk~~l~~~~ 175 (264)
-.+.|-+.++ ++.++-+++++++....++..+..+ .+.+.+ +..+...+.+..
T Consensus 98 a~naLLk~LE--ep~~~t~fIl~t~~~~kl~~tI~SR--~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 98 AANAFLKALE--EPPEYAVIVLNTRRWHYLLPTIKSR--VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HHHHTHHHHH--SCCTTEEEEEEESCGGGSCHHHHTT--SEEEECCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCCCCeEEEEEECChHhChHHHHce--eEeCCCCCHHHHHHHHHHHh
Confidence 4455666666 4556778888887666888888888 666665 445666666554
No 27
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=90.03 E-value=2.1 Score=32.63 Aligned_cols=91 Identities=16% Similarity=0.131 Sum_probs=59.6
Q ss_pred CCCccEEEEeCCCCCChhHHHHHHHHh---cccceEEecCCCCCHHHHHHHHHHHHHcCCeEEeccccch-hHHHHHHHH
Q psy16637 50 RGNVPAVLCSVPGYDASGRVDDLAAEL---GKQIASIAIGSAEGFNQADNVINVAVRSGKWVLLKNVHLA-PQWLVQLEK 125 (264)
Q Consensus 50 ~~~~Pii~i~s~g~DP~~~i~~lA~~~---~~~~~~islG~~~~~~~a~~~l~~a~~~G~WllL~N~hL~-~~~l~~L~~ 125 (264)
....|+++.-.+|+.-+.....++... +..+. +..+...+.......+..| +|+-|+|++++.. +..-..|-.
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~a--~~g~l~ldei~~l~~~~q~~Ll~ 98 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNAPQLNDFIALA--QGGTLVLSHPEHLTREQQYHLVQ 98 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTSSCHHHHHHHH--TTSCEEEECGGGSCHHHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcchhhhcHHHHc--CCcEEEEcChHHCCHHHHHHHHH
Confidence 456799999999999988888887653 44555 6554432211233445443 6788999999766 444445555
Q ss_pred HhhccCCCCCceEEEecCCC
Q psy16637 126 KLHSLQPHANFRLFLTMEIN 145 (264)
Q Consensus 126 ~l~~~~~h~~FRL~lt~~~~ 145 (264)
.+. ..+.++|++.+++..
T Consensus 99 ~l~--~~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 99 LQS--QEHRPFRLIGIGDTS 116 (145)
T ss_dssp HHH--SSSCSSCEEEEESSC
T ss_pred HHh--hcCCCEEEEEECCcC
Confidence 553 345688999988754
No 28
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=89.70 E-value=1.5 Score=37.57 Aligned_cols=114 Identities=19% Similarity=0.233 Sum_probs=71.3
Q ss_pred CCccEEEEeCCCCCChhHHHHHHHHh---cccceEEecCCCCCHHHHH---------------HHHHHHHH--cCCeEEe
Q psy16637 51 GNVPAVLCSVPGYDASGRVDDLAAEL---GKQIASIAIGSAEGFNQAD---------------NVINVAVR--SGKWVLL 110 (264)
Q Consensus 51 ~~~Pii~i~s~g~DP~~~i~~lA~~~---~~~~~~islG~~~~~~~a~---------------~~l~~a~~--~G~WllL 110 (264)
+..|++|.-++|+.-|.....+|+.. +..+..+..+.-....... ..+..+.. .|..|+|
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~l 125 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILF 125 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEE
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhcCCCCccccccccchHHHHHHhCCCeEEEE
Confidence 34578999999999999999998876 3345556554322100011 23444443 4679999
Q ss_pred ccccch-hHHHHHHHHHhhccC------CCCCce---EEEecCC--------------------------CCCChHhHhh
Q psy16637 111 KNVHLA-PQWLVQLEKKLHSLQ------PHANFR---LFLTMEI--------------------------NPKVPVNLLR 154 (264)
Q Consensus 111 ~N~hL~-~~~l~~L~~~l~~~~------~h~~FR---L~lt~~~--------------------------~~~~P~~lL~ 154 (264)
++++.. +.....|.+.++... ...+|| +++|++. ...|+..++.
T Consensus 126 DEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 205 (311)
T 4fcw_A 126 DAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN 205 (311)
T ss_dssp ETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT
T ss_pred eChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh
Confidence 999876 456667777775421 123455 8888887 3357777888
Q ss_pred cc-eeeeecCC
Q psy16637 155 AG-RIFVFEPP 164 (264)
Q Consensus 155 ~s-~kv~~e~p 164 (264)
++ ..+.+.+|
T Consensus 206 R~~~~~~~~p~ 216 (311)
T 4fcw_A 206 RLDEIVVFRPL 216 (311)
T ss_dssp TCSEEEECCCC
T ss_pred cCCeEEEeCCC
Confidence 87 44444443
No 29
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=89.59 E-value=3.5 Score=35.90 Aligned_cols=117 Identities=13% Similarity=0.156 Sum_probs=77.8
Q ss_pred CCccEEEEeCCCCCChhHHHHHHHHhcccceEEecCC------CCCHHHHHHHHHHHHHcC-CeEEeccccchh------
Q psy16637 51 GNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGS------AEGFNQADNVINVAVRSG-KWVLLKNVHLAP------ 117 (264)
Q Consensus 51 ~~~Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~------~~~~~~a~~~l~~a~~~G-~WllL~N~hL~~------ 117 (264)
+...+++.-+||+.-|.....+|+..+..+..++... ++.......+++.|.... .-|+|++++...
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~ 129 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG 129 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC----
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCC
Confidence 3446899999999999999999999887777766432 121123445566666543 578889987542
Q ss_pred ------HHHHHHHHHhhcc-CCCCCceEEEecCCCCCChHhHhhcceeeeecCCccH
Q psy16637 118 ------QWLVQLEKKLHSL-QPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPPGI 167 (264)
Q Consensus 118 ------~~l~~L~~~l~~~-~~h~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p~~l 167 (264)
.....|-..+... ....+.++..+++....++..++.++.+..+=++++.
T Consensus 130 ~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~ 186 (322)
T 3eie_A 130 ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDL 186 (322)
T ss_dssp --CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCH
T ss_pred cchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCH
Confidence 2234444444444 3466777777888777899999998865554444444
No 30
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=89.29 E-value=0.57 Score=44.59 Aligned_cols=114 Identities=15% Similarity=0.172 Sum_probs=73.3
Q ss_pred CccEEEEeCCCCCChhHHHHHHHHhcccceEEecCCCCCH---------------HHHHHHHHHHHHcCCeEEeccccch
Q psy16637 52 NVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAEGF---------------NQADNVINVAVRSGKWVLLKNVHLA 116 (264)
Q Consensus 52 ~~Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~~~~~---------------~~a~~~l~~a~~~G~WllL~N~hL~ 116 (264)
..+++++-++|+.-|.....+|...+..+..++++..... ......+..|...+.-++|+.++-.
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~~~~vl~lDEid~l 187 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNPVFLLDEIDKM 187 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------CHHHHHHTTCSSSEEEEEEESSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHhhccCCEEEEhhhhhh
Confidence 3357788899999999999999988777777776542110 0112234445456668888888765
Q ss_pred h-HH----HHHHHHHhhcc-----CCC--------CCceEEEecCCCCCChHhHhhcceeeeecCCc
Q psy16637 117 P-QW----LVQLEKKLHSL-----QPH--------ANFRLFLTMEINPKVPVNLLRAGRIFVFEPPP 165 (264)
Q Consensus 117 ~-~~----l~~L~~~l~~~-----~~h--------~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p~ 165 (264)
. .. ...|-+.++.. ..| +++++++|+++...+|..++.++..+.+.+|+
T Consensus 188 ~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~R~~vi~~~~~~ 254 (543)
T 3m6a_A 188 SSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRDRMEIINIAGYT 254 (543)
T ss_dssp C---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHHHEEEEECCCCC
T ss_pred hhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHhhcceeeeCCCC
Confidence 3 21 12222333211 111 67889999999899999999999877776654
No 31
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=89.27 E-value=5.4 Score=33.85 Aligned_cols=117 Identities=14% Similarity=0.118 Sum_probs=72.4
Q ss_pred CCccEEEEeCCCCCChhHHHHHHHHhcccceEEecCCC------CCHHHHHHHHHHHHH-cCCeEEeccccchh------
Q psy16637 51 GNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSA------EGFNQADNVINVAVR-SGKWVLLKNVHLAP------ 117 (264)
Q Consensus 51 ~~~Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~~------~~~~~a~~~l~~a~~-~G~WllL~N~hL~~------ 117 (264)
+..++++.-+||+.-|.....+|+..+..+..++.+.- +........+..+.. ++..|+|++++...
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~ 132 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSS 132 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC---
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccC
Confidence 45689999999999999999999998877766665331 111234455555554 45788999986541
Q ss_pred ------HHHHHHHHHhhccCC---CCCceEEEecCCCCCChHhHhhcceeeeecCCccH
Q psy16637 118 ------QWLVQLEKKLHSLQP---HANFRLFLTMEINPKVPVNLLRAGRIFVFEPPPGI 167 (264)
Q Consensus 118 ------~~l~~L~~~l~~~~~---h~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p~~l 167 (264)
.....|-..++.... ..+.+++.+++....++..++.++....+-+++..
T Consensus 133 ~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~ 191 (297)
T 3b9p_A 133 EHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDE 191 (297)
T ss_dssp --CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCH
T ss_pred cchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCH
Confidence 222233333333322 24566777777666788888888754444333333
No 32
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=89.12 E-value=2.3 Score=36.35 Aligned_cols=112 Identities=10% Similarity=0.096 Sum_probs=71.3
Q ss_pred CCCccEEEEeCCCCCChhHHHHHHHHhcc-------cceEEecCCC------CCHHHHHHHHHHHHHcCCeEEeccccch
Q psy16637 50 RGNVPAVLCSVPGYDASGRVDDLAAELGK-------QIASIAIGSA------EGFNQADNVINVAVRSGKWVLLKNVHLA 116 (264)
Q Consensus 50 ~~~~Pii~i~s~g~DP~~~i~~lA~~~~~-------~~~~islG~~------~~~~~a~~~l~~a~~~G~WllL~N~hL~ 116 (264)
.+..|+++.-+||+.-|.....+|+..+. .+..++...- .........++.+ +|..|+|+++|..
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~--~~~vl~iDEid~l 142 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA--MGGVLFIDEAYYL 142 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSSTTCHHHHHHHHHHHH--TTSEEEEETGGGS
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhcccccHHHHHHHHHhc--CCCEEEEEChhhh
Confidence 34557999999999999999888887632 3444443221 1112334555554 6789999999733
Q ss_pred ----------hHHHHHHHHHhhccCCCCCceEEEecCCCC-----CChHhHhhcc-eeeeecCCc
Q psy16637 117 ----------PQWLVQLEKKLHSLQPHANFRLFLTMEINP-----KVPVNLLRAG-RIFVFEPPP 165 (264)
Q Consensus 117 ----------~~~l~~L~~~l~~~~~h~~FRL~lt~~~~~-----~~P~~lL~~s-~kv~~e~p~ 165 (264)
...+..|.+.++. ...++++++++.+.. .+...+..++ ..+.+.+|+
T Consensus 143 ~~~~~~~~~~~~~~~~Ll~~l~~--~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~ 205 (309)
T 3syl_A 143 YRPDNERDYGQEAIEILLQVMEN--NRDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYS 205 (309)
T ss_dssp CCCC---CCTHHHHHHHHHHHHH--CTTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCC
T ss_pred ccCCCcccccHHHHHHHHHHHhc--CCCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcC
Confidence 3455566665553 346778888876532 1235677777 777777664
No 33
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.09 E-value=4.2 Score=35.57 Aligned_cols=119 Identities=18% Similarity=0.256 Sum_probs=77.7
Q ss_pred EEEEeCCCCCChhHHHHHHHHhcc-----cceEEecCCCCCHHHHHHHHHHHHHc-------CCeEEeccccch-hHHHH
Q psy16637 55 AVLCSVPGYDASGRVDDLAAELGK-----QIASIAIGSAEGFNQADNVINVAVRS-------GKWVLLKNVHLA-PQWLV 121 (264)
Q Consensus 55 ii~i~s~g~DP~~~i~~lA~~~~~-----~~~~islG~~~~~~~a~~~l~~a~~~-------G~WllL~N~hL~-~~~l~ 121 (264)
++|.-++|+.-|..+..+|+.... .+..+......+...++..+....+. ..-++++++|.. ..-..
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~ 128 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQN 128 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHH
Confidence 788889999999999999987531 23344443333444555556554432 356778999865 33344
Q ss_pred HHHHHhhccCCCCCceEEEecCCCCCChHhHhhcceeeeecCCc--cHHHHHHHHh
Q psy16637 122 QLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPP--GIKANLLRTF 175 (264)
Q Consensus 122 ~L~~~l~~~~~h~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p~--~lk~~l~~~~ 175 (264)
.|-+.++.. .++-++.++++....++..+..+|..+.+.+++ .++..+.+..
T Consensus 129 ~L~~~le~~--~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~ 182 (340)
T 1sxj_C 129 ALRRVIERY--TKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVL 182 (340)
T ss_dssp HHHHHHHHT--TTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHH
T ss_pred HHHHHHhcC--CCCeEEEEEecCccccchhHHhhceeEeccCCCHHHHHHHHHHHH
Confidence 555566543 455677888887778899999999988887643 3445554443
No 34
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=88.84 E-value=6.2 Score=34.40 Aligned_cols=124 Identities=11% Similarity=0.036 Sum_probs=71.9
Q ss_pred CCccEEEEeCCCCCChhHHHHHHHHh---------cccceEEecCCCC----------------------CHHHHHHHHH
Q psy16637 51 GNVPAVLCSVPGYDASGRVDDLAAEL---------GKQIASIAIGSAE----------------------GFNQADNVIN 99 (264)
Q Consensus 51 ~~~Pii~i~s~g~DP~~~i~~lA~~~---------~~~~~~islG~~~----------------------~~~~a~~~l~ 99 (264)
...++++.-++|+.-|..+..+++.. +..+..++..... ........+.
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~ 122 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLV 122 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH
Confidence 34468888889999999888888765 3344445432211 1122233444
Q ss_pred HHHHcCC---eEEeccccchhH---HHHHHHHHhhccC--C-CCCceEEEecCCC---CCChHhHhhcc--eeeeecCCc
Q psy16637 100 VAVRSGK---WVLLKNVHLAPQ---WLVQLEKKLHSLQ--P-HANFRLFLTMEIN---PKVPVNLLRAG--RIFVFEPPP 165 (264)
Q Consensus 100 ~a~~~G~---WllL~N~hL~~~---~l~~L~~~l~~~~--~-h~~FRL~lt~~~~---~~~P~~lL~~s--~kv~~e~p~ 165 (264)
.++++.+ .|+|+++|.... ....|..++.... . ..+++++++++.. ..+...+..++ ..+.+.+++
T Consensus 123 ~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~ 202 (387)
T 2v1u_A 123 KRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYT 202 (387)
T ss_dssp HHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCC
T ss_pred HHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCC
Confidence 4554433 788999987643 3344555554332 1 6788998888665 46777787777 567776543
Q ss_pred --cHHHHHHHH
Q psy16637 166 --GIKANLLRT 174 (264)
Q Consensus 166 --~lk~~l~~~ 174 (264)
.++..+.+.
T Consensus 203 ~~~~~~il~~~ 213 (387)
T 2v1u_A 203 APQLRDILETR 213 (387)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 344444433
No 35
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.69 E-value=4 Score=35.40 Aligned_cols=120 Identities=14% Similarity=0.150 Sum_probs=76.8
Q ss_pred cEEEEeCCCCCChhHHHHHHHHhcc------cceEEecCCCCCHHHHHHHHHHHHH-----------------cCCeEEe
Q psy16637 54 PAVLCSVPGYDASGRVDDLAAELGK------QIASIAIGSAEGFNQADNVINVAVR-----------------SGKWVLL 110 (264)
Q Consensus 54 Pii~i~s~g~DP~~~i~~lA~~~~~------~~~~islG~~~~~~~a~~~l~~a~~-----------------~G~WllL 110 (264)
++++.-++|+.-|..+..+|+..+. .+..++.....+.......+..... .+.-|++
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlii 139 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIIL 139 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEE
Confidence 3888889999999999999987531 2334443332333344333433222 2347888
Q ss_pred ccccch-hHHHHHHHHHhhccCCCCCceEEEecCCCCCChHhHhhcceeeeecCCc--cHHHHHHHHh
Q psy16637 111 KNVHLA-PQWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPP--GIKANLLRTF 175 (264)
Q Consensus 111 ~N~hL~-~~~l~~L~~~l~~~~~h~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p~--~lk~~l~~~~ 175 (264)
+++|.. ......|.+.++.. ..+-++.++++....++..+..+|..+.+.+++ .++..+.+..
T Consensus 140 DE~~~l~~~~~~~Ll~~le~~--~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~ 205 (353)
T 1sxj_D 140 DEADSMTADAQSALRRTMETY--SGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFIS 205 (353)
T ss_dssp TTGGGSCHHHHHHHHHHHHHT--TTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHH
T ss_pred ECCCccCHHHHHHHHHHHHhc--CCCceEEEEeCchhhCcchhhccCceEEeCCCCHHHHHHHHHHHH
Confidence 999865 44555666666543 345688888877778888999999988877654 3455555444
No 36
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=88.44 E-value=2 Score=42.20 Aligned_cols=93 Identities=15% Similarity=0.188 Sum_probs=62.5
Q ss_pred cEEEEeCCCCCChhHHHHHHHHhcccceEEecCCCCC-------------H-HH-HHHHHHHHH--HcCCeEEeccccch
Q psy16637 54 PAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAEG-------------F-NQ-ADNVINVAV--RSGKWVLLKNVHLA 116 (264)
Q Consensus 54 Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~~~~-------------~-~~-a~~~l~~a~--~~G~WllL~N~hL~ 116 (264)
+++|.-++|+.-|.....+|+..+..+..+.++.-.+ . .. ....+..++ ..+..|+|++++.+
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~ 569 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGS
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCCCCCcCccccchHHHHHHhCCCcEEEEeCcccc
Confidence 5888899999999999999998887777776654211 1 00 011233333 34689999999877
Q ss_pred -hHHHHHHHHHhhccCC---------CCCceEEEecCCCC
Q psy16637 117 -PQWLVQLEKKLHSLQP---------HANFRLFLTMEINP 146 (264)
Q Consensus 117 -~~~l~~L~~~l~~~~~---------h~~FRL~lt~~~~~ 146 (264)
+.....|-+.++.-.. ..++++++|+++..
T Consensus 570 ~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~ 609 (758)
T 1r6b_X 570 HPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGV 609 (758)
T ss_dssp CHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSC
T ss_pred CHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcch
Confidence 5677777777764211 25677999998744
No 37
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=88.09 E-value=2.4 Score=41.79 Aligned_cols=111 Identities=16% Similarity=0.188 Sum_probs=73.6
Q ss_pred cEEEEeCCCCCChhHHHHHHHHh---cccceEEecCCCCCH-HHHHHHHHHHH--HcCCeEEeccccch-hHHHHHHHHH
Q psy16637 54 PAVLCSVPGYDASGRVDDLAAEL---GKQIASIAIGSAEGF-NQADNVINVAV--RSGKWVLLKNVHLA-PQWLVQLEKK 126 (264)
Q Consensus 54 Pii~i~s~g~DP~~~i~~lA~~~---~~~~~~islG~~~~~-~~a~~~l~~a~--~~G~WllL~N~hL~-~~~l~~L~~~ 126 (264)
+++|.-++|+.-|.....+|+.. +..+..+.++.-.+. ......+..+. ..+..|+|++++.+ +.....|-+.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~ 602 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSGGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQV 602 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC---CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccccchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHH
Confidence 48888899999999999998875 456777777543210 00011222233 35779999999877 5666777777
Q ss_pred hhccC---------CCCCceEEEecCCCCC------------ChHhHhhcc-eeeeecCC
Q psy16637 127 LHSLQ---------PHANFRLFLTMEINPK------------VPVNLLRAG-RIFVFEPP 164 (264)
Q Consensus 127 l~~~~---------~h~~FRL~lt~~~~~~------------~P~~lL~~s-~kv~~e~p 164 (264)
++.-. ...++++++|++..+. |+..++.++ ..|.+.++
T Consensus 603 le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l 662 (758)
T 3pxi_A 603 LEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSL 662 (758)
T ss_dssp HHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--
T ss_pred hccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCC
Confidence 76421 3578899999986543 888888888 56665544
No 38
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=88.06 E-value=5.5 Score=35.32 Aligned_cols=117 Identities=14% Similarity=0.092 Sum_probs=75.6
Q ss_pred CCccEEEEeCCCCCChhHHHHHHHHhcccceEEecCCC------CCHHHHHHHHHHHHH-cCCeEEeccccchh------
Q psy16637 51 GNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSA------EGFNQADNVINVAVR-SGKWVLLKNVHLAP------ 117 (264)
Q Consensus 51 ~~~Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~~------~~~~~a~~~l~~a~~-~G~WllL~N~hL~~------ 117 (264)
+..++++.-++|+.-|.....+|+..+..+..++...- +.......++..|.. .+..|+|+++|...
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~ 195 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDG 195 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC----
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCC
Confidence 45579999999999999999999998877776665432 111233445555554 35788899986431
Q ss_pred ------HHHHHHHHHhhcc--CCCCCceEEEecCCCCCChHhHhhcceeeeecCCccH
Q psy16637 118 ------QWLVQLEKKLHSL--QPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPPGI 167 (264)
Q Consensus 118 ------~~l~~L~~~l~~~--~~h~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p~~l 167 (264)
..+..|...++.. ....+++++.+++....++..++.++.++.+=+++..
T Consensus 196 ~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~ 253 (357)
T 3d8b_A 196 EHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEA 253 (357)
T ss_dssp --CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCH
T ss_pred cchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCH
Confidence 2233333333332 2356788888888777888999998875444444443
No 39
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=87.97 E-value=0.64 Score=35.65 Aligned_cols=91 Identities=8% Similarity=0.000 Sum_probs=56.6
Q ss_pred CCCccEEEEeCCCCCChhHHHHHHHHhcccceEEecCCCCCHHHHHHHHHHHHHcCCeEEeccccch-hHHHHHHHHHhh
Q psy16637 50 RGNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAEGFNQADNVINVAVRSGKWVLLKNVHLA-PQWLVQLEKKLH 128 (264)
Q Consensus 50 ~~~~Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~~~~~~~a~~~l~~a~~~G~WllL~N~hL~-~~~l~~L~~~l~ 128 (264)
....|+++.-++|+.-+.....++...+ .+..+..+.-.+ ......++. .+|+-|+|++++.. ......|-+.++
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~-~~~~~~~~~--a~~~~l~lDei~~l~~~~q~~Ll~~l~ 100 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLI-DMPMELLQK--AEGGVLYVGDIAQYSRNIQTGITFIIG 100 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHH-HCHHHHHHH--TTTSEEEEEECTTCCHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCCh-HhhhhHHHh--CCCCeEEEeChHHCCHHHHHHHHHHHH
Confidence 3456999999999988876666665544 444444332111 112334443 35789999999866 444455555555
Q ss_pred ccCCCCCceEEEecCCC
Q psy16637 129 SLQPHANFRLFLTMEIN 145 (264)
Q Consensus 129 ~~~~h~~FRL~lt~~~~ 145 (264)
... +.++|+..+++..
T Consensus 101 ~~~-~~~~~iI~~tn~~ 116 (143)
T 3co5_A 101 KAE-RCRVRVIASCSYA 116 (143)
T ss_dssp HHT-TTTCEEEEEEEEC
T ss_pred hCC-CCCEEEEEecCCC
Confidence 433 5779999988654
No 40
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=87.79 E-value=8.3 Score=33.41 Aligned_cols=110 Identities=11% Similarity=0.139 Sum_probs=68.9
Q ss_pred CCCccEEEEeCCCCCChhHHHHHHHHh---cccceEEecCCCCCHHHHHH-------------------HHHHHHHcCCe
Q psy16637 50 RGNVPAVLCSVPGYDASGRVDDLAAEL---GKQIASIAIGSAEGFNQADN-------------------VINVAVRSGKW 107 (264)
Q Consensus 50 ~~~~Pii~i~s~g~DP~~~i~~lA~~~---~~~~~~islG~~~~~~~a~~-------------------~l~~a~~~G~W 107 (264)
....|+++.-.+|+.-+.....++... +..+..+..+.-.. +..+. .++. .+|+.
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~-~l~~~~lfg~~~g~~tg~~~~~~g~~~~--a~~g~ 99 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNE-SLLESELFGHEKGAFTGADKRREGRFVE--ADGGT 99 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCH-HHHHHHHTCCCSSCCC---CCCCCHHHH--HTTSE
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCCh-HHHHHHhcCccccccCchhhhhcCHHHh--cCCCE
Confidence 345689999999999888888887743 34566666554321 11111 2222 35789
Q ss_pred EEeccccch-hHHHHHHHHHhhccC---------CCCCceEEEecCCC-------CCChHhHhhcceeeeec
Q psy16637 108 VLLKNVHLA-PQWLVQLEKKLHSLQ---------PHANFRLFLTMEIN-------PKVPVNLLRAGRIFVFE 162 (264)
Q Consensus 108 llL~N~hL~-~~~l~~L~~~l~~~~---------~h~~FRL~lt~~~~-------~~~P~~lL~~s~kv~~e 162 (264)
|+|++++.. ......|-..++... .+.++|++++++.. ..|...+..+.-.+.++
T Consensus 100 L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~Rl~~~~i~ 171 (304)
T 1ojl_A 100 LFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYYRLNVVAIE 171 (304)
T ss_dssp EEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHHHHSSEEEE
T ss_pred EEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHHhhcCeeEEe
Confidence 999999866 444455666665321 35789999998875 24666666664444443
No 41
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=86.50 E-value=1.9 Score=33.33 Aligned_cols=111 Identities=15% Similarity=0.222 Sum_probs=68.0
Q ss_pred CCccEEEEeCCCCCChhHHHHHHHHh----------cccceEEecCCC----CCH----HHHHHHHHHHHHc--CCeEEe
Q psy16637 51 GNVPAVLCSVPGYDASGRVDDLAAEL----------GKQIASIAIGSA----EGF----NQADNVINVAVRS--GKWVLL 110 (264)
Q Consensus 51 ~~~Pii~i~s~g~DP~~~i~~lA~~~----------~~~~~~islG~~----~~~----~~a~~~l~~a~~~--G~WllL 110 (264)
...++++.-++|+.-|..+..+|+.. +..+..+.+... ... ......+..+.+. +..|+|
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~i 121 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFI 121 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEE
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEE
Confidence 34568888888999999999998875 333444443211 010 1233344444443 457888
Q ss_pred ccccchh----------HHHHHHHHHhhccCCCCCceEEEecCCCC-----CChHhHhhcceeeeecCCc
Q psy16637 111 KNVHLAP----------QWLVQLEKKLHSLQPHANFRLFLTMEINP-----KVPVNLLRAGRIFVFEPPP 165 (264)
Q Consensus 111 ~N~hL~~----------~~l~~L~~~l~~~~~h~~FRL~lt~~~~~-----~~P~~lL~~s~kv~~e~p~ 165 (264)
+++|... .....|...++ ..++++.++++... .++..+..++..+...+|+
T Consensus 122 De~~~l~~~~~~~~~~~~~~~~l~~~~~----~~~~~ii~~~~~~~~~~~~~~~~~l~~R~~~i~i~~p~ 187 (187)
T 2p65_A 122 DEIHTVVGAGAVAEGALDAGNILKPMLA----RGELRCIGATTVSEYRQFIEKDKALERRFQQILVEQPS 187 (187)
T ss_dssp TTGGGGSSSSSSCTTSCCTHHHHHHHHH----TTCSCEEEEECHHHHHHHTTTCHHHHHHEEEEECCSCC
T ss_pred eCHHHhcccccccccchHHHHHHHHHHh----cCCeeEEEecCHHHHHHHHhccHHHHHhcCcccCCCCC
Confidence 9997653 33334444443 35677888776543 5778888888887777663
No 42
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=86.45 E-value=6.2 Score=36.25 Aligned_cols=117 Identities=13% Similarity=0.121 Sum_probs=74.5
Q ss_pred CCccEEEEeCCCCCChhHHHHHHHHh-cccceEEecCC------CCCHHHHHHHHHHHHHc-CCeEEeccccch-h----
Q psy16637 51 GNVPAVLCSVPGYDASGRVDDLAAEL-GKQIASIAIGS------AEGFNQADNVINVAVRS-GKWVLLKNVHLA-P---- 117 (264)
Q Consensus 51 ~~~Pii~i~s~g~DP~~~i~~lA~~~-~~~~~~islG~------~~~~~~a~~~l~~a~~~-G~WllL~N~hL~-~---- 117 (264)
+..++++.-+||+.-|.....+|... +..+..++... ++.......++..|... ..-|+|+++|.. .
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~ 245 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSE 245 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCC
Confidence 44679999999999999999999987 65565555322 11112345666666654 468888998754 1
Q ss_pred -------HHHHHHHHHhhccC-CCCCceEEEecCCCCCChHhHhhcceeeeecCCccH
Q psy16637 118 -------QWLVQLEKKLHSLQ-PHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPPGI 167 (264)
Q Consensus 118 -------~~l~~L~~~l~~~~-~h~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p~~l 167 (264)
.....|...++... ...+..++.+++....++..++.++-++.+-++++.
T Consensus 246 ~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~ 303 (444)
T 2zan_A 246 NESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEA 303 (444)
T ss_dssp CCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCH
T ss_pred ccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCH
Confidence 12222222222222 357788888888877899999998865544444443
No 43
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=86.02 E-value=6 Score=36.96 Aligned_cols=113 Identities=19% Similarity=0.213 Sum_probs=75.0
Q ss_pred ccEEEEeCCCCCChhHHHHHHHHhcccceEEecCCC------CCHHHHHHHHHHHHHc-CCeEEeccccchh--------
Q psy16637 53 VPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSA------EGFNQADNVINVAVRS-GKWVLLKNVHLAP-------- 117 (264)
Q Consensus 53 ~Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~~------~~~~~a~~~l~~a~~~-G~WllL~N~hL~~-------- 117 (264)
.+++++-+||+.-|.....+|.+.+..+..++..+- .+....+.++..|... ..-|+|++++...
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~ 129 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLG 129 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC------
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccC
Confidence 469999999999999999999998877776664321 1223456778888764 5678889886531
Q ss_pred -------HHHHHHHHHhhccCCCCCceEEEecCCCCCChHhHhhcce---eeeecCCc
Q psy16637 118 -------QWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGR---IFVFEPPP 165 (264)
Q Consensus 118 -------~~l~~L~~~l~~~~~h~~FRL~lt~~~~~~~P~~lL~~s~---kv~~e~p~ 165 (264)
..+..|-..++......+.+++.+++....++..+++... .+.+..|+
T Consensus 130 g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd 187 (476)
T 2ce7_A 130 GGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPD 187 (476)
T ss_dssp ---CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCC
T ss_pred cCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCC
Confidence 1233333333333445678888888877778777776332 56666554
No 44
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=85.98 E-value=1.1 Score=39.17 Aligned_cols=110 Identities=15% Similarity=0.144 Sum_probs=74.6
Q ss_pred CccEEEEeCCCCCChhHHHHHHHHhcccceEEecCCCCCHHHHHHHHHH----------HHHcC----CeEEeccccch-
Q psy16637 52 NVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAEGFNQADNVINV----------AVRSG----KWVLLKNVHLA- 116 (264)
Q Consensus 52 ~~Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~~~~~~~a~~~l~~----------a~~~G----~WllL~N~hL~- 116 (264)
..|+++.-+||+.-|.....+|+..+..+..+..+.+... ...+.. ..+.| ++++++++|..
T Consensus 46 ~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~---~~l~g~~~~~~~~~~~~~~~g~l~~~vl~iDEi~~~~ 122 (331)
T 2r44_A 46 GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLP---SDLIGTMIYNQHKGNFEVKKGPVFSNFILADEVNRSP 122 (331)
T ss_dssp TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCH---HHHHEEEEEETTTTEEEEEECTTCSSEEEEETGGGSC
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCCh---hhcCCceeecCCCCceEeccCcccccEEEEEccccCC
Confidence 4599999999999999999999988877766765433221 111100 01123 69999999877
Q ss_pred hHHHHHHHHHhhcc---------CCCCCceEEEecCCCC-----CChHhHhhcce-eeeecCC
Q psy16637 117 PQWLVQLEKKLHSL---------QPHANFRLFLTMEINP-----KVPVNLLRAGR-IFVFEPP 164 (264)
Q Consensus 117 ~~~l~~L~~~l~~~---------~~h~~FRL~lt~~~~~-----~~P~~lL~~s~-kv~~e~p 164 (264)
+.....|.+.+++. ..+.+|.++.|++|.. .++..++.++. ++.+..|
T Consensus 123 ~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p 185 (331)
T 2r44_A 123 AKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYL 185 (331)
T ss_dssp HHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCC
T ss_pred HHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHhheeEEEEcCCC
Confidence 45555565555431 2467899998888764 38999999976 4666655
No 45
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=85.70 E-value=1.8 Score=36.59 Aligned_cols=122 Identities=15% Similarity=0.120 Sum_probs=71.6
Q ss_pred CccEEEEeCCCCCChhHHHHHHHHhcccceEEecCC-----CCC--HHHHHHHHHHHHH-cCCeEEeccccch-------
Q psy16637 52 NVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGS-----AEG--FNQADNVINVAVR-SGKWVLLKNVHLA------- 116 (264)
Q Consensus 52 ~~Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~-----~~~--~~~a~~~l~~a~~-~G~WllL~N~hL~------- 116 (264)
..++++.-++|+.-|.....+|+..+..+..+.-++ ... .......++.+.+ ++.-|+|++++..
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~ 143 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG 143 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTT
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCC
Confidence 346888889999999999999999887766664322 111 1223445555553 4678899998753
Q ss_pred ----hHHHHHHHHHhhccC-CCCCceEEEecCCCCCChH-hHhhc-ceeeeecCCccHHHHHHHH
Q psy16637 117 ----PQWLVQLEKKLHSLQ-PHANFRLFLTMEINPKVPV-NLLRA-GRIFVFEPPPGIKANLLRT 174 (264)
Q Consensus 117 ----~~~l~~L~~~l~~~~-~h~~FRL~lt~~~~~~~P~-~lL~~-s~kv~~e~p~~lk~~l~~~ 174 (264)
..++..|...++... ...+.+++.|++....++. .+..+ +..+.+ +|..-+..+.++
T Consensus 144 ~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~-p~l~~r~~i~~i 207 (272)
T 1d2n_A 144 PRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHV-PNIATGEQLLEA 207 (272)
T ss_dssp TBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEEC-CCEEEHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcC-CCccHHHHHHHH
Confidence 346666766665443 3445566666665433443 23333 445544 333333444433
No 46
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=85.28 E-value=4 Score=35.41 Aligned_cols=63 Identities=14% Similarity=0.124 Sum_probs=44.7
Q ss_pred cCCeEEeccccch-hHHHHHHHHHhhc----c-------CCCCCceEEEecCCCC-CChHhHhhccee-eeecCCcc
Q psy16637 104 SGKWVLLKNVHLA-PQWLVQLEKKLHS----L-------QPHANFRLFLTMEINP-KVPVNLLRAGRI-FVFEPPPG 166 (264)
Q Consensus 104 ~G~WllL~N~hL~-~~~l~~L~~~l~~----~-------~~h~~FRL~lt~~~~~-~~P~~lL~~s~k-v~~e~p~~ 166 (264)
+|+.|+|+++|.. ......|-+.++. + ....+|+++.++++.. .++..++.++-. +...+|+.
T Consensus 144 ~~~vl~iDEi~~l~~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~ 220 (350)
T 1g8p_A 144 NRGYLYIDECNLLEDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRD 220 (350)
T ss_dssp TTEEEEETTGGGSCHHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCS
T ss_pred CCCEEEEeChhhCCHHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCc
Confidence 4789999999866 4555556555543 1 1134899999998855 799999999854 77777643
No 47
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=84.98 E-value=4.1 Score=34.53 Aligned_cols=115 Identities=7% Similarity=-0.030 Sum_probs=72.3
Q ss_pred CCccEEEEeCCCCCChhHHHHHHHHhcccceEEecCCCCC--------HHHHHHHHHHH------HHcCCeEEeccccch
Q psy16637 51 GNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAEG--------FNQADNVINVA------VRSGKWVLLKNVHLA 116 (264)
Q Consensus 51 ~~~Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~~~~--------~~~a~~~l~~a------~~~G~WllL~N~hL~ 116 (264)
...|+++.-+||+.-|.....+|+..+..+..++.+.-.+ .......+..+ ...+.-|+|+++|..
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l 128 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKI 128 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhc
Confidence 4458999999999999999999999887776665543210 01233333211 234679999999866
Q ss_pred h-H------------HHHHHHHHhhccC--------CCCCceEEEec----CCCCCChHhHhhcc-eeeeecCCc
Q psy16637 117 P-Q------------WLVQLEKKLHSLQ--------PHANFRLFLTM----EINPKVPVNLLRAG-RIFVFEPPP 165 (264)
Q Consensus 117 ~-~------------~l~~L~~~l~~~~--------~h~~FRL~lt~----~~~~~~P~~lL~~s-~kv~~e~p~ 165 (264)
. . +...|-+.++... ...+++++.++ +....++..++.++ ..+.+.+|+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~ 203 (310)
T 1ofh_A 129 CKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALS 203 (310)
T ss_dssp SCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCC
T ss_pred CccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEcCCcccCCcccCCHHHHhhCCceEEcCCcC
Confidence 3 1 2445555555321 23466766664 23346888899888 457776654
No 48
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=84.16 E-value=11 Score=32.89 Aligned_cols=119 Identities=20% Similarity=0.236 Sum_probs=70.5
Q ss_pred ccEEEEeCCCCCChhHHHHHHHHhccc--ceEEecCC-------------------------------------------
Q psy16637 53 VPAVLCSVPGYDASGRVDDLAAELGKQ--IASIAIGS------------------------------------------- 87 (264)
Q Consensus 53 ~Pii~i~s~g~DP~~~i~~lA~~~~~~--~~~islG~------------------------------------------- 87 (264)
.++++.-+||+.-|.....+|+..+.. +..++-+.
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~ 150 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSR 150 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC-
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcc
Confidence 479999999999999999999887642 22222100
Q ss_pred ---------C---CCHHHHHHHHHHH----HHcC------CeEEeccccch-hHHHHHHHHHhhccCCCCCceEEEecC-
Q psy16637 88 ---------A---EGFNQADNVINVA----VRSG------KWVLLKNVHLA-PQWLVQLEKKLHSLQPHANFRLFLTME- 143 (264)
Q Consensus 88 ---------~---~~~~~a~~~l~~a----~~~G------~WllL~N~hL~-~~~l~~L~~~l~~~~~h~~FRL~lt~~- 143 (264)
+ +........+..+ ...| .-|+|+.+|.. ......|.+.++.... . .++++++
T Consensus 151 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l~~~~~~~L~~~le~~~~--~-~~ii~t~~ 227 (368)
T 3uk6_A 151 TQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIESFSFLNRALESDMA--P-VLIMATNR 227 (368)
T ss_dssp ---CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGSBHHHHHHHHHHTTCTTC--C-EEEEEESC
T ss_pred cccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccccChHHHHHHHHHhhCcCC--C-eeeeeccc
Confidence 0 0012333344333 3345 38899999876 4555556665543221 1 2333333
Q ss_pred -----------CCCCChHhHhhcceeeeecCCc--cHHHHHHHH
Q psy16637 144 -----------INPKVPVNLLRAGRIFVFEPPP--GIKANLLRT 174 (264)
Q Consensus 144 -----------~~~~~P~~lL~~s~kv~~e~p~--~lk~~l~~~ 174 (264)
+...+|..++.++..+.+.+|+ .++..+.+.
T Consensus 228 ~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~ 271 (368)
T 3uk6_A 228 GITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIR 271 (368)
T ss_dssp SEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHH
T ss_pred ceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHH
Confidence 2456899999999998887653 344544433
No 49
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=81.06 E-value=7 Score=36.15 Aligned_cols=109 Identities=16% Similarity=0.241 Sum_probs=66.1
Q ss_pred CCccEEEEeCCCCCChhHHHHHHHHh----------cccceEEecCC---CCCHHHHHHHHHHHHHcCCeEEeccccchh
Q psy16637 51 GNVPAVLCSVPGYDASGRVDDLAAEL----------GKQIASIAIGS---AEGFNQADNVINVAVRSGKWVLLKNVHLAP 117 (264)
Q Consensus 51 ~~~Pii~i~s~g~DP~~~i~~lA~~~----------~~~~~~islG~---~~~~~~a~~~l~~a~~~G~WllL~N~hL~~ 117 (264)
...+++++-+||+.-|..+..+|+.. +..+..++++. |+.......++..+.+.+..+++=+ ...
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~e~~~~~~~~~~~~~~~~iLfiD--~~~ 277 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRLKKVMDEIRQAGNIILFID--AAI 277 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------CTTHHHHHHHHHTCCCCEEEEC--C--
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCccccchHHHHHHHHHHHHHhcCCeEEEEe--Cch
Confidence 34467888999999999999999885 44555555541 1111244567777776665555433 122
Q ss_pred HHHHHHHHHhhccCCCCCceEEEecCCCC-----CChHhHhhcceeeeecCCc
Q psy16637 118 QWLVQLEKKLHSLQPHANFRLFLTMEINP-----KVPVNLLRAGRIFVFEPPP 165 (264)
Q Consensus 118 ~~l~~L~~~l~~~~~h~~FRL~lt~~~~~-----~~P~~lL~~s~kv~~e~p~ 165 (264)
+. ...|...-...+++++.++++.. .++..+..++.+|.++.|+
T Consensus 278 ~a----~~~L~~~L~~g~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~~p~ 326 (468)
T 3pxg_A 278 DA----SNILKPSLARGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPS 326 (468)
T ss_dssp ----------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCC
T ss_pred hH----HHHHHHhhcCCCEEEEecCCHHHHHHHhhcCHHHHHhCccceeCCCC
Confidence 21 12222221255789998888776 5788999999998888774
No 50
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.06 E-value=29 Score=31.87 Aligned_cols=124 Identities=16% Similarity=0.243 Sum_probs=80.0
Q ss_pred CccEEEEeCCCCCChhHHHHHHHHhcccceEEecCC------CCCHHHHHHHHHHHHHcCCeEEe-ccccch--------
Q psy16637 52 NVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGS------AEGFNQADNVINVAVRSGKWVLL-KNVHLA-------- 116 (264)
Q Consensus 52 ~~Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~------~~~~~~a~~~l~~a~~~G~WllL-~N~hL~-------- 116 (264)
..-+++.-+||+.-|.....+|...+..+..++.++ |++....+.++..|.+..-.|++ ++++-.
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~ 285 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQ 285 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCC
Confidence 334999999999999999999999998887777654 23334667788888887666554 554311
Q ss_pred -------hHHHHHHHHHhhccCCCCCceEEEecCCCCCChHhHhhcc---eeeeecCCccH--HHHHHHHh
Q psy16637 117 -------PQWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAG---RIFVFEPPPGI--KANLLRTF 175 (264)
Q Consensus 117 -------~~~l~~L~~~l~~~~~h~~FRL~lt~~~~~~~P~~lL~~s---~kv~~e~p~~l--k~~l~~~~ 175 (264)
...+..|-..+.......+--++.|++-...++..+++.+ .+|.+-.+|+- |..+.+.+
T Consensus 286 ~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~ 356 (428)
T 4b4t_K 286 TGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTI 356 (428)
T ss_dssp SCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHH
Confidence 1233444444444455566666777777778999999743 35555223333 44444443
No 51
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=80.01 E-value=2.2 Score=34.63 Aligned_cols=112 Identities=11% Similarity=0.134 Sum_probs=69.5
Q ss_pred CCccEEEEeCCCCCChhHHHHHHHHhc---ccceEEecCCCCCHHHHHHHHHHHHHcCCeEEeccccchh---HHHHHHH
Q psy16637 51 GNVPAVLCSVPGYDASGRVDDLAAELG---KQIASIAIGSAEGFNQADNVINVAVRSGKWVLLKNVHLAP---QWLVQLE 124 (264)
Q Consensus 51 ~~~Pii~i~s~g~DP~~~i~~lA~~~~---~~~~~islG~~~~~~~a~~~l~~a~~~G~WllL~N~hL~~---~~l~~L~ 124 (264)
...++++.-++|+.-|..+..+|+..+ ..+..++.+.-.. .....+ ....++..|+|+++|... .|...|.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~vliiDe~~~~~~~~~~~~~l~ 127 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHAS--ISTALL-EGLEQFDLICIDDVDAVAGHPLWEEAIF 127 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGG--SCGGGG-TTGGGSSEEEEETGGGGTTCHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHH--HHHHHH-HhccCCCEEEEeccccccCCHHHHHHHH
Confidence 456888899999999999988887654 4556666544221 111112 234667899999998663 3355555
Q ss_pred HHhhccCCCCCceEEEecCCCC----CChHhHhhcc---eeeeecCCc
Q psy16637 125 KKLHSLQPHANFRLFLTMEINP----KVPVNLLRAG---RIFVFEPPP 165 (264)
Q Consensus 125 ~~l~~~~~h~~FRL~lt~~~~~----~~P~~lL~~s---~kv~~e~p~ 165 (264)
..++....+...++++++...+ .+...+..++ ..+.+.+|+
T Consensus 128 ~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~ 175 (242)
T 3bos_A 128 DLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMM 175 (242)
T ss_dssp HHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCC
T ss_pred HHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCC
Confidence 5554332233447888876544 3445677666 677776653
No 52
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=78.97 E-value=18 Score=29.08 Aligned_cols=71 Identities=20% Similarity=0.259 Sum_probs=42.3
Q ss_pred EEEEeCCCCCChhHH-HHHHHHhcccceEEecCCCCCHHHHHH-HHHHHHHcCCeEEecc--ccchhHHHHHHHHHhhc
Q psy16637 55 AVLCSVPGYDASGRV-DDLAAELGKQIASIAIGSAEGFNQADN-VINVAVRSGKWVLLKN--VHLAPQWLVQLEKKLHS 129 (264)
Q Consensus 55 ii~i~s~g~DP~~~i-~~lA~~~~~~~~~islG~~~~~~~a~~-~l~~a~~~G~WllL~N--~hL~~~~l~~L~~~l~~ 129 (264)
+|++-....|.+.++ .+++++ ...++.+. ....+...|.. .++. .+|.||++=| .-+.+.|+..+.+.++.
T Consensus 37 iIvvDd~S~d~t~~~~~~~~~~-~~~i~~i~-~~n~G~~~a~N~g~~~--a~g~~i~~lD~Dd~~~~~~l~~l~~~~~~ 111 (240)
T 3bcv_A 37 IILIDDESPDNCPKICDDYAAQ-YPNIKVIH-KKNAGLGMACNSGLDV--ATGEYVAFCDSDDYVDSDMYMTMYNVAQK 111 (240)
T ss_dssp EEEEECCCSSSHHHHHHHHHHH-CSSEEEEE-CCCCCHHHHHHHHHHH--CCSSEEEECCTTCCCCTTHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhh-CCCEEEEE-CCCCChHHHHHHHHHH--cCCCEEEEECCCCcCCHHHHHHHHHHHHh
Confidence 555555556777554 444443 33455565 34445434432 3333 3799999955 45668999998887764
No 53
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=78.68 E-value=11 Score=35.17 Aligned_cols=115 Identities=14% Similarity=0.105 Sum_probs=76.8
Q ss_pred CCCccEEEEeCCCCCChhHHHHHHHHhcccceEEecCC------CCCHHHHHHHHHHHHHcC-CeEEeccccch------
Q psy16637 50 RGNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGS------AEGFNQADNVINVAVRSG-KWVLLKNVHLA------ 116 (264)
Q Consensus 50 ~~~~Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~------~~~~~~a~~~l~~a~~~G-~WllL~N~hL~------ 116 (264)
.+..++++.-++|..-|.....+|...+..+..++.+. ++.......+++.|.... .-|+|++++..
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~ 315 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK 315 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTS
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcchhHHHHHHHHHHHHhcCCcEEEecchhhhcccccc
Confidence 34457999999999999999999998887776665322 111224455666665542 47888998432
Q ss_pred ------hHHHHHHHHHhhccCCCCCceEEEecCCCCCChHhHhh--cce-eeeecCC
Q psy16637 117 ------PQWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLR--AGR-IFVFEPP 164 (264)
Q Consensus 117 ------~~~l~~L~~~l~~~~~h~~FRL~lt~~~~~~~P~~lL~--~s~-kv~~e~p 164 (264)
......|-..++......+++++.+++....++..+.. +.. .+.+..|
T Consensus 316 ~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P 372 (489)
T 3hu3_A 316 THGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIP 372 (489)
T ss_dssp CCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCC
T ss_pred ccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCC
Confidence 13445555666666667889999999887778888877 333 3444433
No 54
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=78.51 E-value=20 Score=30.97 Aligned_cols=117 Identities=14% Similarity=0.179 Sum_probs=73.4
Q ss_pred EEEEeCCCCCChhHHHHHHHHh-ccc---c-----------------------eEEecCCC-CCH---HHHHHHHHHHHH
Q psy16637 55 AVLCSVPGYDASGRVDDLAAEL-GKQ---I-----------------------ASIAIGSA-EGF---NQADNVINVAVR 103 (264)
Q Consensus 55 ii~i~s~g~DP~~~i~~lA~~~-~~~---~-----------------------~~islG~~-~~~---~~a~~~l~~a~~ 103 (264)
+++.-++|+.-|..+..+|... +.. + ..+.+... .+. ..+++.++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 118 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQ 118 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC----CCHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhhcCCcchHHHHHHHHHHHH
Confidence 7778888999999998888853 110 0 01222111 110 134555555432
Q ss_pred ---------------cCCeEEeccccch-hHHHHHHHHHhhccCCCCCceEEEecCCCCCChHhHhhcceeeeecCCc--
Q psy16637 104 ---------------SGKWVLLKNVHLA-PQWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPP-- 165 (264)
Q Consensus 104 ---------------~G~WllL~N~hL~-~~~l~~L~~~l~~~~~h~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p~-- 165 (264)
+..-++|+++|.. ..-...|.+.++.. .++.++.+++.....++..+..+|.++.+.+|+
T Consensus 119 ~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~--~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~ 196 (354)
T 1sxj_E 119 MEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKY--SKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDS 196 (354)
T ss_dssp TTC------------CCEEEEEECTTSSCHHHHHHHHHHHHHS--TTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHH
T ss_pred hccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHHHhh--cCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHH
Confidence 4458888998764 34445566666543 356788888887778999999999999988765
Q ss_pred cHHHHHHH
Q psy16637 166 GIKANLLR 173 (264)
Q Consensus 166 ~lk~~l~~ 173 (264)
.++..+.+
T Consensus 197 ~~~~~l~~ 204 (354)
T 1sxj_E 197 EISTILSD 204 (354)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444443
No 55
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=77.38 E-value=24 Score=30.68 Aligned_cols=118 Identities=15% Similarity=0.110 Sum_probs=68.7
Q ss_pred ccEEEEeCCCCCChhHHHHHHHHh-----------cccceEEecCCCC------------------------CHHHHHHH
Q psy16637 53 VPAVLCSVPGYDASGRVDDLAAEL-----------GKQIASIAIGSAE------------------------GFNQADNV 97 (264)
Q Consensus 53 ~Pii~i~s~g~DP~~~i~~lA~~~-----------~~~~~~islG~~~------------------------~~~~a~~~ 97 (264)
..+++.-++|+.-|..+..+++.. +..+..++..... ........
T Consensus 46 ~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 125 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDK 125 (384)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHH
Confidence 358888889999999888888765 4444444422111 11122223
Q ss_pred HHHHHHcC-CeEEeccccchhH--HHHH-HHHHhhccCCCCCceEEEecCCC---CCChHhHhhc-ceeeeecCCc--cH
Q psy16637 98 INVAVRSG-KWVLLKNVHLAPQ--WLVQ-LEKKLHSLQPHANFRLFLTMEIN---PKVPVNLLRA-GRIFVFEPPP--GI 167 (264)
Q Consensus 98 l~~a~~~G-~WllL~N~hL~~~--~l~~-L~~~l~~~~~h~~FRL~lt~~~~---~~~P~~lL~~-s~kv~~e~p~--~l 167 (264)
+...+++. .-|+|+++|.... +... +..++... .++++.++++.. ..+...+..+ +..+.+.+++ .+
T Consensus 126 l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~---~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~ 202 (384)
T 2qby_B 126 IKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD---ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQL 202 (384)
T ss_dssp HHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS---SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHH
T ss_pred HHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC---cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHH
Confidence 33444443 3888999986532 2333 44444322 788999988765 4566666666 4667776543 34
Q ss_pred HHHHHH
Q psy16637 168 KANLLR 173 (264)
Q Consensus 168 k~~l~~ 173 (264)
+..+.+
T Consensus 203 ~~il~~ 208 (384)
T 2qby_B 203 KFILSK 208 (384)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 56
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.64 E-value=45 Score=30.40 Aligned_cols=125 Identities=16% Similarity=0.239 Sum_probs=80.1
Q ss_pred CCccEEEEeCCCCCChhHHHHHHHHhcccceEEecCC------CCCHHHHHHHHHHHHHcCCeEEe-ccccch-------
Q psy16637 51 GNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGS------AEGFNQADNVINVAVRSGKWVLL-KNVHLA------- 116 (264)
Q Consensus 51 ~~~Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~------~~~~~~a~~~l~~a~~~G~WllL-~N~hL~------- 116 (264)
+..-+++.-+||..-|.....+|.+.+.++..|+.++ |++....+.+++.|.+..-.|++ +.+.-.
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~ 260 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEG 260 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCS
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCC
Confidence 3445999999999999999999999998877776533 23335677888889888766665 554321
Q ss_pred ----hH----HHHHHHHHhhccCCCCCceEEEecCCCCCChHhHhh--cc-eeeeecCCccH-HHHHHHHh
Q psy16637 117 ----PQ----WLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLR--AG-RIFVFEPPPGI-KANLLRTF 175 (264)
Q Consensus 117 ----~~----~l~~L~~~l~~~~~h~~FRL~lt~~~~~~~P~~lL~--~s-~kv~~e~p~~l-k~~l~~~~ 175 (264)
.. .+..|-..++......+--++.+++-...+...+++ +. .+|.+..|.-- |..+.+.+
T Consensus 261 ~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~ 331 (405)
T 4b4t_J 261 SGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIH 331 (405)
T ss_dssp SSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHH
Confidence 11 222333333334455555666777777789999997 32 45666555421 34444444
No 57
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=76.27 E-value=12 Score=37.30 Aligned_cols=92 Identities=20% Similarity=0.233 Sum_probs=59.8
Q ss_pred ccEEEEeCCCCCChhHHHHHHHHh---cccceEEecCCCCCH--------------HHHH-HHHHHHH--HcCCeEEecc
Q psy16637 53 VPAVLCSVPGYDASGRVDDLAAEL---GKQIASIAIGSAEGF--------------NQAD-NVINVAV--RSGKWVLLKN 112 (264)
Q Consensus 53 ~Pii~i~s~g~DP~~~i~~lA~~~---~~~~~~islG~~~~~--------------~~a~-~~l~~a~--~~G~WllL~N 112 (264)
.|++|.-++|+.-|.....+|... +..+..+.++.-.+. ...+ ..+..++ +.|+.|+|++
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDE 668 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDE 668 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC--------------CHHHHHHHCSSEEEEESS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccccchHHHHHHhCCCeEEEEec
Confidence 467888999999999888888876 455666665432110 0001 2333443 3478999999
Q ss_pred ccch-hHHHHHHHHHhhccC------CCCCce---EEEecCC
Q psy16637 113 VHLA-PQWLVQLEKKLHSLQ------PHANFR---LFLTMEI 144 (264)
Q Consensus 113 ~hL~-~~~l~~L~~~l~~~~------~h~~FR---L~lt~~~ 144 (264)
++.. +.....|.+.++.-. ..-+|| +++|++.
T Consensus 669 i~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~ 710 (854)
T 1qvr_A 669 IEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNL 710 (854)
T ss_dssp GGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCT
T ss_pred ccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCc
Confidence 9866 567777877776421 234677 8998886
No 58
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=75.42 E-value=21 Score=30.65 Aligned_cols=110 Identities=14% Similarity=0.152 Sum_probs=69.6
Q ss_pred CccEEEEeCCCCCChhHHHHHHHHh---cccceEEecCCCCCHHHHH-------HHHHHHHHcCCeEEeccccchh---H
Q psy16637 52 NVPAVLCSVPGYDASGRVDDLAAEL---GKQIASIAIGSAEGFNQAD-------NVINVAVRSGKWVLLKNVHLAP---Q 118 (264)
Q Consensus 52 ~~Pii~i~s~g~DP~~~i~~lA~~~---~~~~~~islG~~~~~~~a~-------~~l~~a~~~G~WllL~N~hL~~---~ 118 (264)
..|+++.-++|+.-|..+..+|... +..+..++...-.. .... ..+..+..++.-|+|+++|... .
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l~~~~~ 115 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQ-AMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSGKER 115 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHH-HHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGTTCHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHH-HHHHHHHcCcHHHHHHHhcCCCEEEEcCcccccCChH
Confidence 4589999999999999999988876 55666666532110 0010 1223345568899999998764 4
Q ss_pred HHHHHHHHhhccCCCCCceEEEecCCCC----CChHhHhhcc---eeeeecC
Q psy16637 119 WLVQLEKKLHSLQPHANFRLFLTMEINP----KVPVNLLRAG---RIFVFEP 163 (264)
Q Consensus 119 ~l~~L~~~l~~~~~h~~FRL~lt~~~~~----~~P~~lL~~s---~kv~~e~ 163 (264)
+...+...++... ..+-+++++++..+ .+...+..++ ..+.+.+
T Consensus 116 ~~~~l~~~l~~~~-~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~ 166 (324)
T 1l8q_A 116 TQIEFFHIFNTLY-LLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL 166 (324)
T ss_dssp HHHHHHHHHHHHH-HTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC
T ss_pred HHHHHHHHHHHHH-HCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC
Confidence 4455555544321 12347888876443 4788888887 5555554
No 59
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=74.29 E-value=17 Score=32.42 Aligned_cols=155 Identities=10% Similarity=0.094 Sum_probs=80.0
Q ss_pred HHhhcCCcHHHHHHHHHHHHhCccccc-------ccCCCCChhHHhhhhcCCCccEEEEeCCCCCChhHHHHHHHHhc--
Q psy16637 7 IQALRSDRVPAAAHIFVSAVFGEAFML-------SAERELDLPHIVEHELRGNVPAVLCSVPGYDASGRVDDLAAELG-- 77 (264)
Q Consensus 7 ~r~lrpDr~~~a~~~~v~~~lg~~~~~-------~~~~~~~L~~~~~~~s~~~~Pii~i~s~g~DP~~~i~~lA~~~~-- 77 (264)
.|=+.++.+..++++.+...-...... .++....+...+..-.....|+++...+|......-..+....+
T Consensus 100 ~KP~~~~~L~~~i~~~l~~~~~~~~~~~~~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~r~ 179 (368)
T 3dzd_A 100 EKPFSVERFLLTIKHAFEEYSKKAPPQEEIEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSGRK 179 (368)
T ss_dssp ESSCCHHHHHHHHHHHHHHHSCCCCCCCCCCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred eCCCCHHHHHHHHHHHHHHhhhhhcccccccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhcccc
Confidence 344556777777777776542211100 00000111222221234567888888888776543333332222
Q ss_pred ccceEEecCCCCCHHHHHHHH-----------------HHHHHcCCeEEeccccchh-HHHHHHHHHhhcc---------
Q psy16637 78 KQIASIAIGSAEGFNQADNVI-----------------NVAVRSGKWVLLKNVHLAP-QWLVQLEKKLHSL--------- 130 (264)
Q Consensus 78 ~~~~~islG~~~~~~~a~~~l-----------------~~a~~~G~WllL~N~hL~~-~~l~~L~~~l~~~--------- 130 (264)
..+..+..+.-.+ +..+..+ .-...+|+-|+|+++|-.+ ..-..|-+.+++-
T Consensus 180 ~~fv~vnc~~~~~-~~~~~~lfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~ 258 (368)
T 3dzd_A 180 GAFVDLNCASIPQ-ELAESELFGHEKGAFTGALTRKKGKLELADQGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQ 258 (368)
T ss_dssp SCEEEEESSSSCT-TTHHHHHHEECSCSSSSCCCCEECHHHHTTTSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCC
T ss_pred CCcEEEEcccCCh-HHHHHHhcCccccccCCcccccCChHhhcCCCeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCc
Confidence 2266666655332 2233322 1123478889999997664 4445676666532
Q ss_pred CCCCCceEEEecCCC-------CCChHhHhhcceeeeec
Q psy16637 131 QPHANFRLFLTMEIN-------PKVPVNLLRAGRIFVFE 162 (264)
Q Consensus 131 ~~h~~FRL~lt~~~~-------~~~P~~lL~~s~kv~~e 162 (264)
....++|++.+++.. ..|-..++.+.-.+..+
T Consensus 259 ~~~~~~rii~at~~~l~~~v~~g~fr~dL~~rl~~~~i~ 297 (368)
T 3dzd_A 259 KIEVDIRVISATNKNLEEEIKKGNFREDLYYRLSVFQIY 297 (368)
T ss_dssp BEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTSEEEE
T ss_pred ceeeeeEEEEecCCCHHHHHHcCCccHHHHHHhCCeEEe
Confidence 124589999888654 23555555555544444
No 60
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=73.97 E-value=18 Score=31.82 Aligned_cols=78 Identities=15% Similarity=0.084 Sum_probs=50.6
Q ss_pred CCccEEEEeCCCCCChhHHHHHHHHhcccceEEecCCCC-------CH-HHHHHHHHH-----HHHcCCeEEeccccch-
Q psy16637 51 GNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAE-------GF-NQADNVINV-----AVRSGKWVLLKNVHLA- 116 (264)
Q Consensus 51 ~~~Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~~~-------~~-~~a~~~l~~-----a~~~G~WllL~N~hL~- 116 (264)
+..+++|.-++|+.-|.....+|+..+..+..++.+.-. .. ......+.. ....|+.|+|+.+|..
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~ 150 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKIS 150 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC-
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHh
Confidence 455799999999999999999999988776666554321 10 112222222 1246889999999865
Q ss_pred hH--------------HHHHHHHHhh
Q psy16637 117 PQ--------------WLVQLEKKLH 128 (264)
Q Consensus 117 ~~--------------~l~~L~~~l~ 128 (264)
.. ....|-+.++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~Ll~~le 176 (376)
T 1um8_A 151 RLSENRSITRDVSGEGVQQALLKIVE 176 (376)
T ss_dssp -------------CHHHHHHHHHHHH
T ss_pred hhcCCCceecccchHHHHHHHHHHhh
Confidence 33 5556666665
No 61
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=71.88 E-value=17 Score=35.50 Aligned_cols=109 Identities=16% Similarity=0.222 Sum_probs=66.9
Q ss_pred CCccEEEEeCCCCCChhHHHHHHHHh----------cccceEEecCCC---CCHHHHHHHHHHHHHcCCeEEeccccchh
Q psy16637 51 GNVPAVLCSVPGYDASGRVDDLAAEL----------GKQIASIAIGSA---EGFNQADNVINVAVRSGKWVLLKNVHLAP 117 (264)
Q Consensus 51 ~~~Pii~i~s~g~DP~~~i~~lA~~~----------~~~~~~islG~~---~~~~~a~~~l~~a~~~G~WllL~N~hL~~ 117 (264)
...+++++-+||+.-|..+..+|+.. +..+..+++|.. +-......++..+.+.+..+++=+ ...
T Consensus 200 ~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD--~~~ 277 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRLKKVMDEIRQAGNIILFID--AAI 277 (758)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------CTTHHHHHHHHHTCCCCEEEEC--C--
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecccccccchHHHHHHHHHHHHHhcCCEEEEEc--Cch
Confidence 34468889999999999999999885 444555555332 111245667777776665555433 112
Q ss_pred HHHHHHHHHhhccCCCCCceEEEecCCCC-----CChHhHhhcceeeeecCCc
Q psy16637 118 QWLVQLEKKLHSLQPHANFRLFLTMEINP-----KVPVNLLRAGRIFVFEPPP 165 (264)
Q Consensus 118 ~~l~~L~~~l~~~~~h~~FRL~lt~~~~~-----~~P~~lL~~s~kv~~e~p~ 165 (264)
.... .|...-...+++++.++++.. .++..+..++.+|.++.|+
T Consensus 278 ~~~~----~L~~~l~~~~v~~I~at~~~~~~~~~~~d~al~rRf~~i~v~~p~ 326 (758)
T 3pxi_A 278 DASN----ILKPSLARGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPS 326 (758)
T ss_dssp ----------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCC
T ss_pred hHHH----HHHHHHhcCCEEEEeCCChHHHHHHhhccHHHHhhCcEEEeCCCC
Confidence 2111 222222256789999988877 5888999999888888764
No 62
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=70.46 E-value=2 Score=36.10 Aligned_cols=113 Identities=15% Similarity=0.203 Sum_probs=66.1
Q ss_pred CccEEEEeCCCCCChhHHHHHHHHhcccceEEecCC------CCCHHHHHHHHHHHHHc-CCeEEeccccchhHHH----
Q psy16637 52 NVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGS------AEGFNQADNVINVAVRS-GKWVLLKNVHLAPQWL---- 120 (264)
Q Consensus 52 ~~Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~------~~~~~~a~~~l~~a~~~-G~WllL~N~hL~~~~l---- 120 (264)
..++++.-++|+.-|.....+|+..+..+..++... +.+.......++.|... ..-|+|++++....=-
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~ 123 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGG 123 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC------
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccc
Confidence 446888899999999999999998876554443321 11111233456666653 4688999997542100
Q ss_pred ---------HHHHHHhhccC----CCCCceEEEecCCCCCChHhHhhcc---eeeeecCC
Q psy16637 121 ---------VQLEKKLHSLQ----PHANFRLFLTMEINPKVPVNLLRAG---RIFVFEPP 164 (264)
Q Consensus 121 ---------~~L~~~l~~~~----~h~~FRL~lt~~~~~~~P~~lL~~s---~kv~~e~p 164 (264)
..+.+++..+. ...+..++.|++....++..++..+ ..+.+..|
T Consensus 124 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p 183 (268)
T 2r62_A 124 VVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKP 183 (268)
T ss_dssp ----CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCC
T ss_pred cCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCc
Confidence 01122222221 2344677778877777887777632 34555543
No 63
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.27 E-value=42 Score=30.84 Aligned_cols=115 Identities=14% Similarity=0.159 Sum_probs=74.9
Q ss_pred CCccEEEEeCCCCCChhHHHHHHHHhcccceEEecCC------CCCHHHHHHHHHHHHHcCCeEE-eccccch-------
Q psy16637 51 GNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGS------AEGFNQADNVINVAVRSGKWVL-LKNVHLA------- 116 (264)
Q Consensus 51 ~~~Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~------~~~~~~a~~~l~~a~~~G~Wll-L~N~hL~------- 116 (264)
+..-+++.-+||..-|.....+|...+..+..++.++ |++....+.++..|....-.|+ ++++.-.
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~ 293 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSE 293 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSS
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccC
Confidence 4445999999999999999999999998877776543 2333456677888877655554 4665421
Q ss_pred ----hH-HHHHHHHHh---hccCCCCCceEEEecCCCCCChHhHhhc---ceeeeecCCc
Q psy16637 117 ----PQ-WLVQLEKKL---HSLQPHANFRLFLTMEINPKVPVNLLRA---GRIFVFEPPP 165 (264)
Q Consensus 117 ----~~-~l~~L~~~l---~~~~~h~~FRL~lt~~~~~~~P~~lL~~---s~kv~~e~p~ 165 (264)
.. .-..+..+| .......+.-++.+++-...++..+++. -.+|.+..|.
T Consensus 294 ~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd 353 (437)
T 4b4t_L 294 GTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPN 353 (437)
T ss_dssp CCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCC
T ss_pred CCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcC
Confidence 11 112233333 3334445566777777777899999875 3456665553
No 64
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=68.63 E-value=25 Score=32.67 Aligned_cols=118 Identities=19% Similarity=0.161 Sum_probs=72.4
Q ss_pred CCccEEEEeCCCCCChhHHHHHHHHhcccceEEecCCCCCHHHHHHHHHHH-------------------HHcCCeEEec
Q psy16637 51 GNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAEGFNQADNVINVA-------------------VRSGKWVLLK 111 (264)
Q Consensus 51 ~~~Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~~~~~~~a~~~l~~a-------------------~~~G~WllL~ 111 (264)
+..++++.-++|+.-|..+..+|+..+..+..++-....+....+..+..+ ..++.-|+|+
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliID 155 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMD 155 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEEC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEE
Confidence 345788889999999999999999998776666655443322222222211 1345677889
Q ss_pred cccchh----HHHHHHHHHhhccCCCCCceEEEecCCC--CCChHhHhhcceeeeecCCcc--HHHHHHH
Q psy16637 112 NVHLAP----QWLVQLEKKLHSLQPHANFRLFLTMEIN--PKVPVNLLRAGRIFVFEPPPG--IKANLLR 173 (264)
Q Consensus 112 N~hL~~----~~l~~L~~~l~~~~~h~~FRL~lt~~~~--~~~P~~lL~~s~kv~~e~p~~--lk~~l~~ 173 (264)
++|... ..+..|.+.++.. +-++++++... +.+| .+...|..+.+.+|+. ++..+.+
T Consensus 156 Eid~l~~~~~~~l~~L~~~l~~~----~~~iIli~~~~~~~~l~-~l~~r~~~i~f~~~~~~~~~~~L~~ 220 (516)
T 1sxj_A 156 EVDGMSGGDRGGVGQLAQFCRKT----STPLILICNERNLPKMR-PFDRVCLDIQFRRPDANSIKSRLMT 220 (516)
T ss_dssp SGGGCCTTSTTHHHHHHHHHHHC----SSCEEEEESCTTSSTTG-GGTTTSEEEECCCCCHHHHHHHHHH
T ss_pred CCCccchhhHHHHHHHHHHHHhc----CCCEEEEEcCCCCccch-hhHhceEEEEeCCCCHHHHHHHHHH
Confidence 997542 2345555555532 33566666443 3455 5788899888876542 3444443
No 65
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=67.98 E-value=64 Score=29.60 Aligned_cols=115 Identities=14% Similarity=0.163 Sum_probs=73.0
Q ss_pred CCccEEEEeCCCCCChhHHHHHHHHhcccceEEecCC------CCCHHHHHHHHHHHHHcCCeEEe-ccccch-------
Q psy16637 51 GNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGS------AEGFNQADNVINVAVRSGKWVLL-KNVHLA------- 116 (264)
Q Consensus 51 ~~~Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~------~~~~~~a~~~l~~a~~~G~WllL-~N~hL~------- 116 (264)
+..-+++.-+||..-|.....+|.+.+..+..++.++ |++....+.++..|.+..-.|++ +.+.--
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~ 293 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDS 293 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSG
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCC
Confidence 3345999999999999999999999998877776543 23334566778888877666554 554311
Q ss_pred ----hH-HHHHHHHHhhc---cCCCCCceEEEecCCCCCChHhHhh--cc-eeeeecCCc
Q psy16637 117 ----PQ-WLVQLEKKLHS---LQPHANFRLFLTMEINPKVPVNLLR--AG-RIFVFEPPP 165 (264)
Q Consensus 117 ----~~-~l~~L~~~l~~---~~~h~~FRL~lt~~~~~~~P~~lL~--~s-~kv~~e~p~ 165 (264)
.. .-..+..+|.. .....+--++.+++-...++..+++ +- .+|.+..|.
T Consensus 294 ~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd 353 (434)
T 4b4t_M 294 EKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPS 353 (434)
T ss_dssp GGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCC
T ss_pred CCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcC
Confidence 11 11223333433 3444444556677777789999988 33 345555443
No 66
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=60.60 E-value=34 Score=33.35 Aligned_cols=115 Identities=14% Similarity=0.154 Sum_probs=69.0
Q ss_pred CCccEEEEeCCCCCChhHHHHHHHHh----------cccceEEecCC--------CCCHHHHHHHHHHHHH-cCCeEEec
Q psy16637 51 GNVPAVLCSVPGYDASGRVDDLAAEL----------GKQIASIAIGS--------AEGFNQADNVINVAVR-SGKWVLLK 111 (264)
Q Consensus 51 ~~~Pii~i~s~g~DP~~~i~~lA~~~----------~~~~~~islG~--------~~~~~~a~~~l~~a~~-~G~WllL~ 111 (264)
...+++++-++|+.-|..+..+|... +..+..+.++. ++-.+.....++.+.+ .+..|+++
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~ID 285 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFID 285 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEET
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEe
Confidence 44578899999999999999999875 22233333321 1111234455555544 36788999
Q ss_pred cccchh------HHHHHHHHHhhccCCCCCceEEEecCCCC-----CChHhHhhcceeeeecCCc
Q psy16637 112 NVHLAP------QWLVQLEKKLHSLQPHANFRLFLTMEINP-----KVPVNLLRAGRIFVFEPPP 165 (264)
Q Consensus 112 N~hL~~------~~l~~L~~~l~~~~~h~~FRL~lt~~~~~-----~~P~~lL~~s~kv~~e~p~ 165 (264)
++|... .--......|...-...+++++.++.+.. .....+..++.++.++.|+
T Consensus 286 Ei~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~~I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~ 350 (758)
T 1r6b_X 286 EIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPS 350 (758)
T ss_dssp TTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHHHHHCCCCCTTSSGGGEEEEECCCCC
T ss_pred chHHHhhcCCCCcchHHHHHHHHHHHhCCCeEEEEEeCchHHhhhhhcCHHHHhCceEEEcCCCC
Confidence 998541 01122333443333356788888776532 3445677888888887765
No 67
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.98 E-value=1.1e+02 Score=28.40 Aligned_cols=126 Identities=14% Similarity=0.208 Sum_probs=77.3
Q ss_pred CCCccEEEEeCCCCCChhHHHHHHHHhcccceEEecCC------CCCHHHHHHHHHHHHHcCCeEEe-ccccch------
Q psy16637 50 RGNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGS------AEGFNQADNVINVAVRSGKWVLL-KNVHLA------ 116 (264)
Q Consensus 50 ~~~~Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~------~~~~~~a~~~l~~a~~~G~WllL-~N~hL~------ 116 (264)
.+..-+|+.-+||..-|.....+|.+.+..+..++.+. |++....+.++..|.+..-.|++ +++...
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~ 320 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFD 320 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSS
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccC
Confidence 34456999999999999999999999998877776533 23334667788888877655554 554321
Q ss_pred ------hHHHHHHHHHhhc---cCCCCCceEEEecCCCCCChHhHhh--c-ceeeeecCCcc-HHHHHHHHh
Q psy16637 117 ------PQWLVQLEKKLHS---LQPHANFRLFLTMEINPKVPVNLLR--A-GRIFVFEPPPG-IKANLLRTF 175 (264)
Q Consensus 117 ------~~~l~~L~~~l~~---~~~h~~FRL~lt~~~~~~~P~~lL~--~-s~kv~~e~p~~-lk~~l~~~~ 175 (264)
......+...|.. .....+--++.+++-...+...+++ + -.+|.+..|.- -|..+.+.+
T Consensus 321 ~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~ 392 (467)
T 4b4t_H 321 DGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIH 392 (467)
T ss_dssp SSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHH
T ss_pred cCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHH
Confidence 0111223333333 3444444455667766789999987 3 34555554432 133444444
No 68
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=58.07 E-value=22 Score=28.86 Aligned_cols=71 Identities=8% Similarity=0.165 Sum_probs=39.5
Q ss_pred EEEEeCCCCCChhHHHH-HHHHhcccceEEecC--------CCCCHHHHH-HHHHHHHHcCCeEEecc--ccchhHHHHH
Q psy16637 55 AVLCSVPGYDASGRVDD-LAAELGKQIASIAIG--------SAEGFNQAD-NVINVAVRSGKWVLLKN--VHLAPQWLVQ 122 (264)
Q Consensus 55 ii~i~s~g~DP~~~i~~-lA~~~~~~~~~islG--------~~~~~~~a~-~~l~~a~~~G~WllL~N--~hL~~~~l~~ 122 (264)
+|++-....|.+.++.+ +++ ...++.+... ...+...|. ..++. .+|.||++-+ .-+.+.|+..
T Consensus 33 iivvDd~S~d~t~~~~~~~~~--~~~i~~i~~~~~~~~~~~~n~G~~~a~N~gi~~--a~g~~i~~lD~Dd~~~~~~l~~ 108 (255)
T 1qg8_A 33 LFIMDDNSNEETLNVIRPFLN--DNRVRFYQSDISGVKERTEKTRYAALINQAIEM--AEGEYITYATDDNIYMPDRLLK 108 (255)
T ss_dssp EEEEECSCCHHHHHHHGGGGG--STTEEEEECCCCSHHHHHSSCHHHHHHHHHHHH--CCCSEEEEEETTEEECTTHHHH
T ss_pred EEEEECCCCchHHHHHHHHhh--cCCEEEEecccccccccccccCHHHHHHHHHHH--cCCCEEEEeCCCCccChHHHHH
Confidence 55554444455544322 222 3456666654 344433333 23443 3899999954 4566889998
Q ss_pred HHHHhhc
Q psy16637 123 LEKKLHS 129 (264)
Q Consensus 123 L~~~l~~ 129 (264)
+.+.++.
T Consensus 109 ~~~~~~~ 115 (255)
T 1qg8_A 109 MVRELDT 115 (255)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8777753
No 69
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=57.29 E-value=30 Score=31.50 Aligned_cols=111 Identities=13% Similarity=0.164 Sum_probs=68.3
Q ss_pred CccEEEEeCCCCCChhHHHHHHHHh-----cccceEEecCCCCCHHHHHH--------HHHHHHH-cCCeEEeccccchh
Q psy16637 52 NVPAVLCSVPGYDASGRVDDLAAEL-----GKQIASIAIGSAEGFNQADN--------VINVAVR-SGKWVLLKNVHLAP 117 (264)
Q Consensus 52 ~~Pii~i~s~g~DP~~~i~~lA~~~-----~~~~~~islG~~~~~~~a~~--------~l~~a~~-~G~WllL~N~hL~~ 117 (264)
..|+++.-++|..-|..+..+|... +..+..++...-. ..... .+..+.. +...|+|+++|...
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~ 207 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFL--NDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLI 207 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHH--HHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGS
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH--HHHHHHHHcccHHHHHHHhcCCCCEEEEeCccccc
Confidence 3589999999999999988888765 4455555543210 11111 2233444 77899999998664
Q ss_pred ---HHHHHHHHHhhccCCCCCceEEEecCCCC----CChHhHhhcc---eeeeecCCc
Q psy16637 118 ---QWLVQLEKKLHSLQPHANFRLFLTMEINP----KVPVNLLRAG---RIFVFEPPP 165 (264)
Q Consensus 118 ---~~l~~L~~~l~~~~~h~~FRL~lt~~~~~----~~P~~lL~~s---~kv~~e~p~ 165 (264)
.....|...++... ..+-++.++++..+ .+...++.++ ..+.+++|+
T Consensus 208 ~~~~~q~~l~~~l~~l~-~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~ 264 (440)
T 2z4s_A 208 GKTGVQTELFHTFNELH-DSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_dssp SCHHHHHHHHHHHHHHH-TTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred CChHHHHHHHHHHHHHH-HCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence 34445555544321 23447788776543 2677788776 566666554
No 70
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=56.78 E-value=93 Score=26.54 Aligned_cols=122 Identities=11% Similarity=0.074 Sum_probs=68.0
Q ss_pred CCccEEEEeCCCCCChhHHHHHHHHh------cccceEEecC----------------------CCCCHHHHHHHHHHHH
Q psy16637 51 GNVPAVLCSVPGYDASGRVDDLAAEL------GKQIASIAIG----------------------SAEGFNQADNVINVAV 102 (264)
Q Consensus 51 ~~~Pii~i~s~g~DP~~~i~~lA~~~------~~~~~~islG----------------------~~~~~~~a~~~l~~a~ 102 (264)
....+++.-++|+.-|..+..+++.. +..+..++.. .+.........+..++
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 123 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAV 123 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHH
Confidence 34468888899999999999988865 4344444421 1111223333444444
Q ss_pred Hc---CCeEEeccccchh-----HHHHHHHHHhhccCCCCCceEEEecCCCC---CChHhHhhcc--eeeeecCCc--cH
Q psy16637 103 RS---GKWVLLKNVHLAP-----QWLVQLEKKLHSLQPHANFRLFLTMEINP---KVPVNLLRAG--RIFVFEPPP--GI 167 (264)
Q Consensus 103 ~~---G~WllL~N~hL~~-----~~l~~L~~~l~~~~~h~~FRL~lt~~~~~---~~P~~lL~~s--~kv~~e~p~--~l 167 (264)
+. ...|+|+++|... ..+..|...++.. ...+..+.+++...+ .+...+...+ ..+.+.+++ .+
T Consensus 124 ~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~-~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~ 202 (386)
T 2qby_A 124 RDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEV-NKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEEL 202 (386)
T ss_dssp HTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSC-CC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHH
T ss_pred hccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhc-CCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHH
Confidence 43 3367889987653 3455554444332 345677777775442 3445555555 466666543 34
Q ss_pred HHHHHH
Q psy16637 168 KANLLR 173 (264)
Q Consensus 168 k~~l~~ 173 (264)
+..+.+
T Consensus 203 ~~il~~ 208 (386)
T 2qby_A 203 EDILTK 208 (386)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 71
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=56.64 E-value=1.2e+02 Score=27.85 Aligned_cols=125 Identities=14% Similarity=0.210 Sum_probs=78.4
Q ss_pred CCccEEEEeCCCCCChhHHHHHHHHhcccceEEecCC------CCCHHHHHHHHHHHHHcCCeEEe-ccccch-------
Q psy16637 51 GNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGS------AEGFNQADNVINVAVRSGKWVLL-KNVHLA------- 116 (264)
Q Consensus 51 ~~~Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~------~~~~~~a~~~l~~a~~~G~WllL-~N~hL~------- 116 (264)
+..-+++.-+||..-|.....+|.+.+..+..++.++ |++....+.++..|.+..-.|++ +.++-.
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~ 294 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDS 294 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCS
T ss_pred CCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCC
Confidence 3345999999999999999999999998877776432 23334567778888887655554 554311
Q ss_pred -----hHHHHHHHHHh---hccCCCCCceEEEecCCCCCChHhHhh--c-ceeeeecCCcc-HHHHHHHHh
Q psy16637 117 -----PQWLVQLEKKL---HSLQPHANFRLFLTMEINPKVPVNLLR--A-GRIFVFEPPPG-IKANLLRTF 175 (264)
Q Consensus 117 -----~~~l~~L~~~l---~~~~~h~~FRL~lt~~~~~~~P~~lL~--~-s~kv~~e~p~~-lk~~l~~~~ 175 (264)
...-..+..+| .......+--++.+++-...++..+++ + -.+|.+..|.- -|..+.+.+
T Consensus 295 ~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~ 365 (437)
T 4b4t_I 295 NSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIH 365 (437)
T ss_dssp SCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHH
Confidence 11122333333 334555666677778777789999986 3 34455555432 133444444
No 72
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=54.93 E-value=81 Score=25.31 Aligned_cols=87 Identities=13% Similarity=0.063 Sum_probs=50.8
Q ss_pred EEEEeCCCCCChhHHHHHHHHhcccceEEecCC----------------------CC--CHHHHHHHHHHHHHc--CCeE
Q psy16637 55 AVLCSVPGYDASGRVDDLAAELGKQIASIAIGS----------------------AE--GFNQADNVINVAVRS--GKWV 108 (264)
Q Consensus 55 ii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~----------------------~~--~~~~a~~~l~~a~~~--G~Wl 108 (264)
|++.-.+|+.-+.....||++.|. ..++.+. |+ ..+.+...+..++++ |.++
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg~--~~i~~dd~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~g~~v 80 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYSL--AHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIPMVLETLESKGKDGW 80 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTC--EEEEHHHHHHHHTTTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHCTTCE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC--eEEchHHHHHHHHHcCCHHHHHHHHHHHcCCcCcHHHHHHHHHHHHhcccCCeE
Confidence 556667788888888888877763 3344311 10 012334556677777 8888
Q ss_pred EeccccchhHHHHHHHHHhhccCCCCCceEEEecC
Q psy16637 109 LLKNVHLAPQWLVQLEKKLHSLQPHANFRLFLTME 143 (264)
Q Consensus 109 lL~N~hL~~~~l~~L~~~l~~~~~h~~FRL~lt~~ 143 (264)
+++.......+...|.+.+......++.-+||.+.
T Consensus 81 IlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~ 115 (223)
T 2xb4_A 81 LLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLP 115 (223)
T ss_dssp EEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECC
T ss_pred EEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECC
Confidence 88764444456666665543333345666676664
No 73
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=54.34 E-value=31 Score=34.29 Aligned_cols=110 Identities=23% Similarity=0.281 Sum_probs=62.5
Q ss_pred CccEEEEeCCCCCChhHHHHHHHHh----------cccceEEecCCCC-------C-HHHHHHHHHHHHHcC--CeEEec
Q psy16637 52 NVPAVLCSVPGYDASGRVDDLAAEL----------GKQIASIAIGSAE-------G-FNQADNVINVAVRSG--KWVLLK 111 (264)
Q Consensus 52 ~~Pii~i~s~g~DP~~~i~~lA~~~----------~~~~~~islG~~~-------~-~~~a~~~l~~a~~~G--~WllL~ 111 (264)
..+++++-+||+.-|..+..+|... +..+..++++.-. + ......+++.+...+ .-|+|+
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~ID 270 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFID 270 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEEC
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 3457889999999999999999876 4455555544321 0 122445566665543 366679
Q ss_pred cccchh---------HHHHHHHHHhhccCCCCCceEEEecCCCC----CChHhHhhcceeeeecCCc
Q psy16637 112 NVHLAP---------QWLVQLEKKLHSLQPHANFRLFLTMEINP----KVPVNLLRAGRIFVFEPPP 165 (264)
Q Consensus 112 N~hL~~---------~~l~~L~~~l~~~~~h~~FRL~lt~~~~~----~~P~~lL~~s~kv~~e~p~ 165 (264)
++|... .....|...++ ..+++++.++.+.. .....+..++.+|.+.+|+
T Consensus 271 Ei~~l~~~~~~~g~~~~~~~L~~~l~----~~~i~~I~at~~~~~~~~~~d~aL~rRf~~i~l~~p~ 333 (854)
T 1qvr_A 271 ELHTVVGAGKAEGAVDAGNMLKPALA----RGELRLIGATTLDEYREIEKDPALERRFQPVYVDEPT 333 (854)
T ss_dssp CC-------------------HHHHH----TTCCCEEEEECHHHHHHHTTCTTTCSCCCCEEECCCC
T ss_pred cHHHHhccCCccchHHHHHHHHHHHh----CCCeEEEEecCchHHhhhccCHHHHhCCceEEeCCCC
Confidence 998653 11222333333 34567777665442 2456778888888888765
No 74
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=52.95 E-value=5.9 Score=39.46 Aligned_cols=111 Identities=11% Similarity=0.088 Sum_probs=69.3
Q ss_pred CccEEEEeCCCCCChhHHHHHHHHhcccceEEecCC------CCCHHHHHHHHHHHHHcC-CeEEeccccch--------
Q psy16637 52 NVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGS------AEGFNQADNVINVAVRSG-KWVLLKNVHLA-------- 116 (264)
Q Consensus 52 ~~Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~------~~~~~~a~~~l~~a~~~G-~WllL~N~hL~-------- 116 (264)
...++++-+||+.-|.....+|...+..+..++.+. ++.......+++.|.... .-++++.++..
T Consensus 511 ~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~ 590 (806)
T 1ypw_A 511 SKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNI 590 (806)
T ss_dssp CCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCC
T ss_pred CceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCC
Confidence 345888899999999999999998876666665433 222245666777776654 46677887642
Q ss_pred ---hHHHH-HHHHHhhcc---CCCCCceEEEecCCCCCChHhHhh--cce-eeeec
Q psy16637 117 ---PQWLV-QLEKKLHSL---QPHANFRLFLTMEINPKVPVNLLR--AGR-IFVFE 162 (264)
Q Consensus 117 ---~~~l~-~L~~~l~~~---~~h~~FRL~lt~~~~~~~P~~lL~--~s~-kv~~e 162 (264)
..... .+.++|..+ ....++.++.|++....++..++. +.- .+.+.
T Consensus 591 ~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~ 646 (806)
T 1ypw_A 591 GDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIP 646 (806)
T ss_dssp SHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCC
T ss_pred CCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCcccCCHHHhCccccCceeecC
Confidence 11222 223334333 346677778888877789999987 664 44443
No 75
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=51.91 E-value=24 Score=28.43 Aligned_cols=18 Identities=22% Similarity=0.183 Sum_probs=11.0
Q ss_pred HHHHhcccceEEecCCCC
Q psy16637 72 LAAELGKQIASIAIGSAE 89 (264)
Q Consensus 72 lA~~~~~~~~~islG~~~ 89 (264)
.+++.|.++.+|.+|...
T Consensus 130 ~lk~~gi~v~~Ig~G~~~ 147 (192)
T 2x5n_A 130 RMKKNNVAIDIIHIGELQ 147 (192)
T ss_dssp HHHHTTEEEEEEEESCC-
T ss_pred HHHHCCCEEEEEEeCCCC
Confidence 334456667777887764
No 76
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=50.98 E-value=26 Score=24.62 Aligned_cols=73 Identities=10% Similarity=0.117 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhCcccccccCCCCChhHHhhhhcCCCccEEEEeCC-CCCChhHHHHHHHHhcccceEEecCC
Q psy16637 15 VPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVPAVLCSVP-GYDASGRVDDLAAELGKQIASIAIGS 87 (264)
Q Consensus 15 ~~~a~~~~v~~~lg~~~~~~~~~~~~L~~~~~~~s~~~~Pii~i~s~-g~DP~~~i~~lA~~~~~~~~~islG~ 87 (264)
++..++.-.....-.+|+..+...-|+.+++..--++..|++++... ..+-..++++-|++.|.++..+--..
T Consensus 14 iissvqerakhnypgryirtatssqdirdiiksmkdngkplvvfvngasqndvnefqneakkegvsydvlkstd 87 (112)
T 2lnd_A 14 IISSVQERAKHNYPGRYIRTATSSQDIRDIIKSMKDNGKPLVVFVNGASQNDVNEFQNEAKKEGVSYDVLKSTD 87 (112)
T ss_dssp HHHHHHHHHHHHSCTTTEEEECSHHHHHHHHHHHTTCCSCEEEEECSCCHHHHHHHHHHHHHHTCEEEEEECCC
T ss_pred HHHHHHHHhhcCCCCceeeeccchhhHHHHHHHHHhcCCeEEEEecCcccccHHHHHHHHHhcCcchhhhccCC
Confidence 44445544444455556654334456677765334566787665443 33456788888888887766654333
No 77
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=50.80 E-value=30 Score=30.33 Aligned_cols=78 Identities=13% Similarity=0.091 Sum_probs=51.1
Q ss_pred CCccEEEEeCCCCCChhHHHHHHHHhcccceEEecCCCCCH--------HHHHHHHHHH-----HHcCCeEEeccccc-h
Q psy16637 51 GNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAEGF--------NQADNVINVA-----VRSGKWVLLKNVHL-A 116 (264)
Q Consensus 51 ~~~Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~~~~~--------~~a~~~l~~a-----~~~G~WllL~N~hL-~ 116 (264)
+..+++|.-+||+.-|.....+|+..+..+..++.+.-... .....+++.+ ...|+-|+|+.++- .
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~ 129 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKIS 129 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhc
Confidence 45689999999999999999999998877776655432110 1122233322 24577899999873 3
Q ss_pred hH--------------HHHHHHHHhh
Q psy16637 117 PQ--------------WLVQLEKKLH 128 (264)
Q Consensus 117 ~~--------------~l~~L~~~l~ 128 (264)
.. ....|-+.++
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~Ll~~le 155 (363)
T 3hws_A 130 RKSDNPSITRDVSGEGVQQALLKLIE 155 (363)
T ss_dssp CCSSCC---CHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccchHHHHHHHHHHhc
Confidence 33 5666666665
No 78
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=49.40 E-value=5.3 Score=38.34 Aligned_cols=109 Identities=10% Similarity=0.140 Sum_probs=68.0
Q ss_pred ccEEEEeCCCCCChhHHHHHHHHhcccceEE-----------ec-C---CCCCHHHHHHHHHHHHHcCCeEEeccccch-
Q psy16637 53 VPAVLCSVPGYDASGRVDDLAAELGKQIASI-----------AI-G---SAEGFNQADNVINVAVRSGKWVLLKNVHLA- 116 (264)
Q Consensus 53 ~Pii~i~s~g~DP~~~i~~lA~~~~~~~~~i-----------sl-G---~~~~~~~a~~~l~~a~~~G~WllL~N~hL~- 116 (264)
.|++++-+||+.-|.....+|+..+...... ++ . .+.- ......+. ..+|+.++|+.++..
T Consensus 328 ~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~-~~~~G~l~--~A~~gil~IDEid~l~ 404 (595)
T 3f9v_A 328 IHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEY-YLEAGALV--LADGGIAVIDEIDKMR 404 (595)
T ss_dssp CCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSC-SEEECHHH--HHSSSEECCTTTTCCC
T ss_pred cceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeeccccccc-cccCCeeE--ecCCCcEEeehhhhCC
Confidence 4899999999998887777776543211111 00 0 0100 00011233 347889999999876
Q ss_pred hHHHHHHHHHhhcc-----------CCCCCceEEEecCCCC-------------CChHhHhhcc--eeeeecCC
Q psy16637 117 PQWLVQLEKKLHSL-----------QPHANFRLFLTMEINP-------------KVPVNLLRAG--RIFVFEPP 164 (264)
Q Consensus 117 ~~~l~~L~~~l~~~-----------~~h~~FRL~lt~~~~~-------------~~P~~lL~~s--~kv~~e~p 164 (264)
+.....|.+.+++- ..+.+|+++.++++.. .+|..++.+. +.+..+.|
T Consensus 405 ~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~ 478 (595)
T 3f9v_A 405 DEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQP 478 (595)
T ss_dssp SHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTT
T ss_pred HhHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCC
Confidence 45556666666531 2367899999999875 7899999998 34444433
No 79
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=48.13 E-value=1.5e+02 Score=26.27 Aligned_cols=96 Identities=10% Similarity=0.108 Sum_probs=56.6
Q ss_pred cCCCccEEEEeCCCCCChhHHHHHHHH---hcccceEEecCCCCCHHHHHHHH-----------------HHHHHcCCeE
Q psy16637 49 LRGNVPAVLCSVPGYDASGRVDDLAAE---LGKQIASIAIGSAEGFNQADNVI-----------------NVAVRSGKWV 108 (264)
Q Consensus 49 s~~~~Pii~i~s~g~DP~~~i~~lA~~---~~~~~~~islG~~~~~~~a~~~l-----------------~~a~~~G~Wl 108 (264)
.....|+++...+|+.-+.....+... .+..+..+..+.-.+ +..+..+ .-...+|+.|
T Consensus 157 a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~-~~~~~elfg~~~g~~tga~~~~~g~~~~a~~gtl 235 (387)
T 1ny5_A 157 SCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPR-DIFEAELFGYEKGAFTGAVSSKEGFFELADGGTL 235 (387)
T ss_dssp TTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCH-HHHHHHHHCBCTTSSTTCCSCBCCHHHHTTTSEE
T ss_pred cCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCH-HHHHHHhcCCCCCCCCCcccccCCceeeCCCcEE
Confidence 456779988888887766533333322 224566777654322 2222211 0123578999
Q ss_pred Eeccccch-hHHHHHHHHHhhcc---------CCCCCceEEEecCCC
Q psy16637 109 LLKNVHLA-PQWLVQLEKKLHSL---------QPHANFRLFLTMEIN 145 (264)
Q Consensus 109 lL~N~hL~-~~~l~~L~~~l~~~---------~~h~~FRL~lt~~~~ 145 (264)
+|++++-. ...-..|-+.+++- ....++|+..+++..
T Consensus 236 fldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~ 282 (387)
T 1ny5_A 236 FLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRN 282 (387)
T ss_dssp EEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSC
T ss_pred EEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCC
Confidence 99998755 45555666666532 124689999888653
No 80
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=43.43 E-value=1.5e+02 Score=25.22 Aligned_cols=129 Identities=12% Similarity=0.015 Sum_probs=71.9
Q ss_pred CChhHHhhhhcCCCccEEEEeCC-CCCChhHHHHHHHHh---c-ccceEEecCCCCCHHHHHHHHHHHHH-----cCCeE
Q psy16637 39 LDLPHIVEHELRGNVPAVLCSVP-GYDASGRVDDLAAEL---G-KQIASIAIGSAEGFNQADNVINVAVR-----SGKWV 108 (264)
Q Consensus 39 ~~L~~~~~~~s~~~~Pii~i~s~-g~DP~~~i~~lA~~~---~-~~~~~islG~~~~~~~a~~~l~~a~~-----~G~Wl 108 (264)
-+|.+.+. ..-.|+.++.-+ |.--...+..++++. + .....+.+....+ .+.+++.+.. +..-|
T Consensus 7 ~~l~~~l~---~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~plf~~~kvv 80 (343)
T 1jr3_D 7 EQLRAQLN---EGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPNTD---WNAIFSLCQAMSLFASRQTL 80 (343)
T ss_dssp TTHHHHHH---HCCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCTTCC---HHHHHHHHHHHHHCCSCEEE
T ss_pred HHHHHHHh---cCCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecCCCC---HHHHHHHhcCcCCccCCeEE
Confidence 45665553 234466555332 222234455555543 2 1223444543333 3444444432 34678
Q ss_pred Eeccccc--hhHHHHHHHHHhhccCCCCCceEEEecCC-C-----CCChHhHhhcceeeeecCCc--cHHHHHHHHh
Q psy16637 109 LLKNVHL--APQWLVQLEKKLHSLQPHANFRLFLTMEI-N-----PKVPVNLLRAGRIFVFEPPP--GIKANLLRTF 175 (264)
Q Consensus 109 lL~N~hL--~~~~l~~L~~~l~~~~~h~~FRL~lt~~~-~-----~~~P~~lL~~s~kv~~e~p~--~lk~~l~~~~ 175 (264)
+++++|. ...-.+.|.+++++ +.++-.++++++. . .+++..+..+|..+.+.+++ .+..-+.+.+
T Consensus 81 ii~~~~~kl~~~~~~aLl~~le~--p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~ 155 (343)
T 1jr3_D 81 LLLLPENGPNAAINEQLLTLTGL--LHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARA 155 (343)
T ss_dssp EEECCSSCCCTTHHHHHHHHHTT--CBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHH
T ss_pred EEECCCCCCChHHHHHHHHHHhc--CCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHH
Confidence 8899997 45666778777763 4455566666543 2 35888899999999987643 3555555444
No 81
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=43.40 E-value=1.2e+02 Score=24.00 Aligned_cols=88 Identities=13% Similarity=0.166 Sum_probs=48.2
Q ss_pred cEEEEeCCCCCChhHHHHHHHHhcccceEEecCC----------------------CC--CHHHHHHHHHHHHHc---CC
Q psy16637 54 PAVLCSVPGYDASGRVDDLAAELGKQIASIAIGS----------------------AE--GFNQADNVINVAVRS---GK 106 (264)
Q Consensus 54 Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~----------------------~~--~~~~a~~~l~~a~~~---G~ 106 (264)
-|+++-.||+.-+.....||++.|.. .++.+. |+ ..+....++..++++ |.
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l~~~--~i~~d~li~~~~~~~t~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~~ 84 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEYGLA--HLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVLGLVKEKFDLGVCVN 84 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHCCE--EEEHHHHHHHHHHTC--CCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTTTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCce--EEehhHHHHHHHHcCCHHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccccCC
Confidence 46677788999999999999888743 444311 10 012233455555554 66
Q ss_pred eEEeccccchhHHHHHHHHHhhccCCCCCceEEEecC
Q psy16637 107 WVLLKNVHLAPQWLVQLEKKLHSLQPHANFRLFLTME 143 (264)
Q Consensus 107 WllL~N~hL~~~~l~~L~~~l~~~~~h~~FRL~lt~~ 143 (264)
+++++..-........+.+.+......++.-+||.+.
T Consensus 85 ~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~ 121 (217)
T 3be4_A 85 GFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEID 121 (217)
T ss_dssp CEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECC
T ss_pred CEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECC
Confidence 6666653333233344444343333345666777664
No 82
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=43.19 E-value=74 Score=31.69 Aligned_cols=124 Identities=15% Similarity=0.130 Sum_probs=76.8
Q ss_pred CccEEEEeCCCCCChhHHHHHHHHhcccceEEec------CCCCCHHHHHHHHHHHHHcCC-eEEeccccch--------
Q psy16637 52 NVPAVLCSVPGYDASGRVDDLAAELGKQIASIAI------GSAEGFNQADNVINVAVRSGK-WVLLKNVHLA-------- 116 (264)
Q Consensus 52 ~~Pii~i~s~g~DP~~~i~~lA~~~~~~~~~isl------G~~~~~~~a~~~l~~a~~~G~-WllL~N~hL~-------- 116 (264)
..-+++.-+||..-|.....+|.+.|..+..|+- ..|++....+.+++.|.++.- -|++++++.-
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~ 317 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH 317 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCC
Confidence 3458999999999999999999999887776653 223333456778888887654 4555776532
Q ss_pred ----hHHHHHHHHHhhccCCCCCceEEEecCCCCCChHhHhh--c-ceeeeecCCcc-HHHHHHHHh
Q psy16637 117 ----PQWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLR--A-GRIFVFEPPPG-IKANLLRTF 175 (264)
Q Consensus 117 ----~~~l~~L~~~l~~~~~h~~FRL~lt~~~~~~~P~~lL~--~-s~kv~~e~p~~-lk~~l~~~~ 175 (264)
...+..|-..+..+....+.-+..+++....++..+++ + -..|.+..|.- -|..+.+.+
T Consensus 318 ~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~ 384 (806)
T 3cf2_A 318 GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIH 384 (806)
T ss_dssp CTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHH
Confidence 12344444444444434444455566666788888886 2 23455554432 255555554
No 83
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=43.07 E-value=84 Score=28.22 Aligned_cols=72 Identities=15% Similarity=0.196 Sum_probs=50.9
Q ss_pred EEEEeCCCCCChhHHHHHHHHhcccceEEecCCCCCHHHHHHHHHHHHHcCCeEEeccccchhHHHHHHHHHhh
Q psy16637 55 AVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAEGFNQADNVINVAVRSGKWVLLKNVHLAPQWLVQLEKKLH 128 (264)
Q Consensus 55 ii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~~~~~~~a~~~l~~a~~~G~WllL~N~hL~~~~l~~L~~~l~ 128 (264)
|+++-.+|+.-|.....++++.+ +..|+...-.........+..++++|..+++++..........+.+.+.
T Consensus 261 Iil~G~pGSGKSTla~~L~~~~~--~~~i~~D~~~~~~~~~~~~~~~l~~g~~vIiD~~~~~~~~r~~~~~~~~ 332 (416)
T 3zvl_A 261 VVAVGFPGAGKSTFIQEHLVSAG--YVHVNRDTLGSWQRCVSSCQAALRQGKRVVIDNTNPDVPSRARYIQCAK 332 (416)
T ss_dssp EEEESCTTSSHHHHHHHHTGGGT--CEECCGGGSCSHHHHHHHHHHHHHTTCCEEEESCCCSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhcC--cEEEccchHHHHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHH
Confidence 44556778888888888888775 4455554444445566778888999999999999887665555555543
No 84
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=43.03 E-value=16 Score=34.83 Aligned_cols=60 Identities=8% Similarity=0.016 Sum_probs=43.1
Q ss_pred HHcCCeEEeccccch-hHHHHHHHHHhhcc-------------------CCCCCceEEEecCCC--CCChHhHhhcc---
Q psy16637 102 VRSGKWVLLKNVHLA-PQWLVQLEKKLHSL-------------------QPHANFRLFLTMEIN--PKVPVNLLRAG--- 156 (264)
Q Consensus 102 ~~~G~WllL~N~hL~-~~~l~~L~~~l~~~-------------------~~h~~FRL~lt~~~~--~~~P~~lL~~s--- 156 (264)
..+|++++|+.++.. +.....|.+.+++- ....+||+++++++. ..++..++.++
T Consensus 199 ~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~~l~~~l~~R~~v~ 278 (604)
T 3k1j_A 199 RAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVDKMHPALRSRIRGY 278 (604)
T ss_dssp HTTTSEEEETTGGGSCHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHHHSCHHHHHHHHHH
T ss_pred ecCCCEEEEechhhCCHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHHhhcCHHHHHHhhcc
Confidence 357889999999876 44445666666521 123589999999876 46999999988
Q ss_pred -eeeee
Q psy16637 157 -RIFVF 161 (264)
Q Consensus 157 -~kv~~ 161 (264)
+++.+
T Consensus 279 ~i~i~l 284 (604)
T 3k1j_A 279 GYEVYM 284 (604)
T ss_dssp SEEEEC
T ss_pred ceEeec
Confidence 55654
No 85
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=42.10 E-value=1.2e+02 Score=23.70 Aligned_cols=70 Identities=11% Similarity=0.086 Sum_probs=34.6
Q ss_pred cEEEEeCCCCCCh---hHHHHHH---HHhcccceEEecCCCCCHHHHHHHHHHHHHcCCeEEeccccchhHHHHHHH
Q psy16637 54 PAVLCSVPGYDAS---GRVDDLA---AELGKQIASIAIGSAEGFNQADNVINVAVRSGKWVLLKNVHLAPQWLVQLE 124 (264)
Q Consensus 54 Pii~i~s~g~DP~---~~i~~lA---~~~~~~~~~islG~~~~~~~a~~~l~~a~~~G~WllL~N~hL~~~~l~~L~ 124 (264)
.++++++.|.+.. ..+.+.| ++.|..+..|.+|.+... ...+.|..+-..|+-..++|..--...+.++.
T Consensus 117 ~~iillTDG~~~~~~~~~~~~~a~~l~~~gi~i~~igvG~~~~~-~~L~~iA~~~~~~~~~~~~~~~~L~~~~~~i~ 192 (202)
T 1ijb_A 117 RIALLLMASQEPQRMSRNFVRYVQGLKKKKVIVIPVGIGPHANL-KQIRLIEKQAPENKAFVLSSVDELEQQRDEIV 192 (202)
T ss_dssp EEEEEEECCCCCGGGCTTHHHHHHHHHHTTEEEEEEEESTTSCH-HHHHHHHHHCTTCCCEEESSGGGHHHHHHHHH
T ss_pred eEEEEEccCCCCccchHHHHHHHHHHHHCCCEEEEEecCCcCCH-HHHHHHhCCCCcccEEEeCCHHHHHHHHHHHH
Confidence 4666667775432 2344444 344566667777764432 11122222122466677777543344444443
No 86
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=39.42 E-value=61 Score=25.15 Aligned_cols=73 Identities=18% Similarity=0.104 Sum_probs=40.5
Q ss_pred cEEEEeCCCC---CCh--hHHHHHHHHhcccceEEecCCCCCHHHHHHHHHHHHHc---CCeEEeccccchhHHHHHHHH
Q psy16637 54 PAVLCSVPGY---DAS--GRVDDLAAELGKQIASIAIGSAEGFNQADNVINVAVRS---GKWVLLKNVHLAPQWLVQLEK 125 (264)
Q Consensus 54 Pii~i~s~g~---DP~--~~i~~lA~~~~~~~~~islG~~~~~~~a~~~l~~a~~~---G~WllL~N~hL~~~~l~~L~~ 125 (264)
.+|++++.|. ||. ....+.+++.|..+..|.+|.......-+..|+..+.. |+-..++|..--...+.++.+
T Consensus 108 ~~iillTDG~~~~d~~~~~~~~~~~~~~gi~v~~igvG~~~~~~~~~~~L~~iA~~~~~~~~~~~~~~~~l~~~~~~i~~ 187 (194)
T 1mf7_A 108 KILVVITDGEKFGDPLGYEDVIPEADREGVIRYVIGVGDAFRSEKSRQELNTIASKPPRDHVFQVNNFEALKTIQNQLRE 187 (194)
T ss_dssp EEEEEEESSCCBSCSSCGGGTHHHHHHTTEEEEEEEESGGGCSHHHHHHHHHHSCSSHHHHEEEESSGGGGGGGHHHHHH
T ss_pred eEEEEEcCCCCCCCchhhHHHHHHHHHCCCEEEEEEecccccccccHHHHHHHhCCCCcccEEEeCCHHHHHHHHHHHHH
Confidence 3555555553 554 34445556677777778887653211224556665554 455667775444555555544
Q ss_pred H
Q psy16637 126 K 126 (264)
Q Consensus 126 ~ 126 (264)
.
T Consensus 188 ~ 188 (194)
T 1mf7_A 188 K 188 (194)
T ss_dssp H
T ss_pred H
Confidence 3
No 87
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=39.25 E-value=2.3e+02 Score=27.87 Aligned_cols=105 Identities=14% Similarity=0.138 Sum_probs=68.9
Q ss_pred CCCccEEEEeCCCCCChhHHHHHHHHhcccceEEec----CC--CCCHHHHHHHHHHHHHc-CCeEEeccccchh-----
Q psy16637 50 RGNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAI----GS--AEGFNQADNVINVAVRS-GKWVLLKNVHLAP----- 117 (264)
Q Consensus 50 ~~~~Pii~i~s~g~DP~~~i~~lA~~~~~~~~~isl----G~--~~~~~~a~~~l~~a~~~-G~WllL~N~hL~~----- 117 (264)
.+..+++++-++|+.-|..+..+|...+..+..++- +. ++.......+++.+... ...+++++++...
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~ 315 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK 315 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSC
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhcccc
Confidence 345578889999999999999999887766555542 11 11113445567776654 5678889885431
Q ss_pred -------HHHHHHHHHhhccCCCCCceEEEecCCCCCChHhHhh
Q psy16637 118 -------QWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLR 154 (264)
Q Consensus 118 -------~~l~~L~~~l~~~~~h~~FRL~lt~~~~~~~P~~lL~ 154 (264)
.....|...+.......+..+..+++....++..+..
T Consensus 316 ~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~al~r 359 (806)
T 1ypw_A 316 THGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRR 359 (806)
T ss_dssp CCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTTTTS
T ss_pred ccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcCHHHhc
Confidence 2334444555555556788888888887777766655
No 88
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=37.29 E-value=99 Score=28.97 Aligned_cols=71 Identities=17% Similarity=0.232 Sum_probs=43.6
Q ss_pred EEEEeCCCCCCh-h-HHHHHHHHhcccceEEecCCCCCHHHHHH-HHHHHHHcCCeEEeccccc--hhHHHHHHHHHhh
Q psy16637 55 AVLCSVPGYDAS-G-RVDDLAAELGKQIASIAIGSAEGFNQADN-VINVAVRSGKWVLLKNVHL--APQWLVQLEKKLH 128 (264)
Q Consensus 55 ii~i~s~g~DP~-~-~i~~lA~~~~~~~~~islG~~~~~~~a~~-~l~~a~~~G~WllL~N~hL--~~~~l~~L~~~l~ 128 (264)
||++-....|++ . .+.+++++. ..++.|......+...|.. .++. .+|.||++=|.+. .+.|++.|...+.
T Consensus 147 IIVVDDgS~D~tl~~~l~~~~~~~-~~v~vi~~~~n~G~~~A~N~G~~~--A~gd~i~fLD~D~~~~p~~L~~ll~~l~ 222 (570)
T 2d7i_A 147 IVLVDDFSDREHLKKPLEDYMALF-PSVRILRTKKREGLIRTRMLGASV--ATGDVITFLDSHCEANVNWLPPLLDRIA 222 (570)
T ss_dssp EEEEECSCCCGGGTHHHHHHHTTS-TTEEEEECSSCCCHHHHHHHHHHH--CCSSEEEECCSSEEECTTCSHHHHHHHH
T ss_pred EEEEECCCCcHHHHHHHHHHHHhC-CeEEEEECCCCCCHHHHHHHHHHh--cCCCEEEEEcCCccccccHHHHHHHHHH
Confidence 444444455676 3 455555443 4577777766666444432 2333 4799999977664 4789998877664
No 89
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=36.83 E-value=1.2e+02 Score=28.28 Aligned_cols=71 Identities=14% Similarity=0.195 Sum_probs=39.1
Q ss_pred cEEEEeCCCCCChhHHH-HHHHHhcccceEEecCCCCCHHHHH-HHHHHHHHcCCeEEeccc--cchhHHHHHHHHHhh
Q psy16637 54 PAVLCSVPGYDASGRVD-DLAAELGKQIASIAIGSAEGFNQAD-NVINVAVRSGKWVLLKNV--HLAPQWLVQLEKKLH 128 (264)
Q Consensus 54 Pii~i~s~g~DP~~~i~-~lA~~~~~~~~~islG~~~~~~~a~-~~l~~a~~~G~WllL~N~--hL~~~~l~~L~~~l~ 128 (264)
-+|++-....|.+.++. ++++ ....++.+. ....+...|. ..++. .+|.||++=|. .+.+.|+..+.+.++
T Consensus 406 eiivvdd~S~d~t~~~~~~~~~-~~~~i~~~~-~~n~G~~~a~n~g~~~--a~g~~i~~ld~D~~~~~~~l~~~~~~~~ 480 (625)
T 2z86_A 406 EVCICDDGSTDDTLRILQEHYA-NHPRVRFIS-QKNKGIGSASNTAVRL--CRGFYIGQLDSDDFLEPDAVELCLDEFR 480 (625)
T ss_dssp EEEEEEESCSSSHHHHHHHHHT-TCTTEEEEE-ECCCCHHHHHHHHHHH--CCSSEEEECCTTCEECTTHHHHHHHHHH
T ss_pred EEEEEECcCChhHHHHHHHHHh-hCCcEEEEe-CCCCCHHHHHHHHHHh--cCCCEEEEECCCcccChhHHHHHHHHHH
Confidence 35555444557665543 3332 223455554 4444533332 22333 38999999554 456889988776653
No 90
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=34.36 E-value=1.3e+02 Score=26.96 Aligned_cols=72 Identities=17% Similarity=0.245 Sum_probs=43.7
Q ss_pred EEEEeCCCCCC-hh-HHHHHHHHhcccceEEecCCCCCHHHHHH-HHHHHHHcCCeEEecccc--chhHHHHHHHHHhh
Q psy16637 55 AVLCSVPGYDA-SG-RVDDLAAELGKQIASIAIGSAEGFNQADN-VINVAVRSGKWVLLKNVH--LAPQWLVQLEKKLH 128 (264)
Q Consensus 55 ii~i~s~g~DP-~~-~i~~lA~~~~~~~~~islG~~~~~~~a~~-~l~~a~~~G~WllL~N~h--L~~~~l~~L~~~l~ 128 (264)
||++-....|+ +. .+.+++++....++.|......+...|.. .++. .+|.||++=|.| +.+.|++.+...+.
T Consensus 64 IIvVDd~S~d~~t~~~l~~~~~~~~~~v~vi~~~~n~G~~~a~N~g~~~--A~gd~i~flD~D~~~~p~~L~~ll~~~~ 140 (472)
T 1xhb_A 64 IVLVDDASERDFLKRPLESYVKKLKVPVHVIRMEQRSGLIRARLKGAAV--SRGQVITFLDAHCECTAGWLEPLLARIK 140 (472)
T ss_dssp EEEEECSCCCGGGTHHHHHHHHSSSSCEEEEECSSCCCHHHHHHHHHHH--CCSSEEEEEESSEEECTTCHHHHHHHHH
T ss_pred EEEEECCCCcHHHHHHHHHHHHHCCCcEEEEECCCCCChHHHHHHHHHh--ccCCeEEEECCCeEeCccHHHHHHHHHH
Confidence 44443334454 54 35566555443677887776666544432 2333 469999996655 45789998877764
No 91
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=33.61 E-value=1e+02 Score=28.75 Aligned_cols=112 Identities=15% Similarity=0.207 Sum_probs=64.4
Q ss_pred cEEEEeCCCCCChhHHHHHHHHhcccceEEecCCC----CC--HHHHHHHHHHHHH-cCCeEEeccccchh---------
Q psy16637 54 PAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSA----EG--FNQADNVINVAVR-SGKWVLLKNVHLAP--------- 117 (264)
Q Consensus 54 Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~~----~~--~~~a~~~l~~a~~-~G~WllL~N~hL~~--------- 117 (264)
+++++-++|+.-|..+..+|...+..+..++-..- .+ ......+++.|.. ...-+++++++...
T Consensus 66 GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~ 145 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGG 145 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCC
Confidence 58899999999999999999887766655553221 11 1122334444432 23678889986421
Q ss_pred ---HHHHHHHHHhhc---cCCCCCceEEEecCCCCCChHhHhhcc---eeeeecCCc
Q psy16637 118 ---QWLVQLEKKLHS---LQPHANFRLFLTMEINPKVPVNLLRAG---RIFVFEPPP 165 (264)
Q Consensus 118 ---~~l~~L~~~l~~---~~~h~~FRL~lt~~~~~~~P~~lL~~s---~kv~~e~p~ 165 (264)
.+-..+.+++.. .+......+..+++....+...++..+ ..+.++.|+
T Consensus 146 ~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd 202 (499)
T 2dhr_A 146 GNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPD 202 (499)
T ss_dssp SSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCC
T ss_pred CcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcccccccccceEEecCCCC
Confidence 122333444433 344445555556655555777777643 355565543
No 92
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.37 E-value=56 Score=27.96 Aligned_cols=35 Identities=23% Similarity=0.287 Sum_probs=19.6
Q ss_pred EEEEeCCCCCChhHHHHHHHHh---cccceEEecCCCC
Q psy16637 55 AVLCSVPGYDASGRVDDLAAEL---GKQIASIAIGSAE 89 (264)
Q Consensus 55 ii~i~s~g~DP~~~i~~lA~~~---~~~~~~islG~~~ 89 (264)
|||+.+++.+--..+.++|++. |..+.+|.+|.+.
T Consensus 111 Ilf~ds~~~~~~~~l~~lak~lkk~gI~v~vIgFG~~~ 148 (268)
T 4b4t_W 111 VAFVCSPISDSRDELIRLAKTLKKNNVAVDIINFGEIE 148 (268)
T ss_dssp EEEECSCCSSCHHHHHHHHHHHHHHTEEEEEEEESSCC
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEEeCCCc
Confidence 3333455544445566666543 4566777777654
No 93
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=30.47 E-value=1.4e+02 Score=28.85 Aligned_cols=72 Identities=17% Similarity=0.211 Sum_probs=47.4
Q ss_pred EEEeCCCC-CC--hhHHHHHHHHhcccceEEecCCCCCHHHHH-HHHHHHHH--cCCeEEecc--ccchhHHHHHHHHHh
Q psy16637 56 VLCSVPGY-DA--SGRVDDLAAELGKQIASIAIGSAEGFNQAD-NVINVAVR--SGKWVLLKN--VHLAPQWLVQLEKKL 127 (264)
Q Consensus 56 i~i~s~g~-DP--~~~i~~lA~~~~~~~~~islG~~~~~~~a~-~~l~~a~~--~G~WllL~N--~hL~~~~l~~L~~~l 127 (264)
|++...|+ |+ +..+.+.+++.+..++.|..+ ..|...+. ..++.|.. ++.||++=| +-+.+.|+..+.+.+
T Consensus 215 IIVVDNgStD~s~~~~~~e~~~~~~~~I~vI~~~-N~G~a~a~N~Gl~~A~g~~~~dyIlfLD~D~~~~pd~L~~ll~~l 293 (657)
T 4fix_A 215 VIVPDQGERKVRDHPDFPAAAARLGSRLSIHDQP-NLGGSGGYSRVMYEALKNTDCQQILFMDDDIRLEPDSILRVLAMH 293 (657)
T ss_dssp EEEEECSSSCGGGSTTHHHHHHHHGGGEEEEECC-CCHHHHHHHHHHHHHHHHCCCSEEEEECSSEEECTHHHHHHHHHH
T ss_pred EEEEECcCCCccchHHHHHHHHhcCCCEEEEECC-CCCHHHHHHHHHHHHHhcCCCCEEEEECCCCccChhHHHHHHHHH
Confidence 55555554 44 345667776666678888766 44443333 45777776 468999844 566689999988776
Q ss_pred h
Q psy16637 128 H 128 (264)
Q Consensus 128 ~ 128 (264)
+
T Consensus 294 ~ 294 (657)
T 4fix_A 294 R 294 (657)
T ss_dssp H
T ss_pred H
Confidence 5
No 94
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=28.93 E-value=2.7e+02 Score=23.65 Aligned_cols=122 Identities=12% Similarity=0.051 Sum_probs=63.5
Q ss_pred cEEEEeCCCCCChhHHHHHHHHhc----ccceEEecCCCC----------------------CHHHHHHHHHHHH-HcCC
Q psy16637 54 PAVLCSVPGYDASGRVDDLAAELG----KQIASIAIGSAE----------------------GFNQADNVINVAV-RSGK 106 (264)
Q Consensus 54 Pii~i~s~g~DP~~~i~~lA~~~~----~~~~~islG~~~----------------------~~~~a~~~l~~a~-~~G~ 106 (264)
++++.-++|+.-|..+..++.... ..+..+...... ........+...+ +.|.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 125 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDL 125 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCC
Confidence 455666778877777777776652 223333322111 1112222222222 2343
Q ss_pred --eEEeccccch-hHHHHHHHHHhhccCC--CCCceEEEecCCC---CCChHhHhhcce--eeeecCCc--cHHHHHHHH
Q psy16637 107 --WVLLKNVHLA-PQWLVQLEKKLHSLQP--HANFRLFLTMEIN---PKVPVNLLRAGR--IFVFEPPP--GIKANLLRT 174 (264)
Q Consensus 107 --WllL~N~hL~-~~~l~~L~~~l~~~~~--h~~FRL~lt~~~~---~~~P~~lL~~s~--kv~~e~p~--~lk~~l~~~ 174 (264)
-|+|+++|.. ...+..|...++.... ..++++++++... ..+...+..++. .+.+.+++ .++..+...
T Consensus 126 ~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~ 205 (389)
T 1fnn_A 126 YMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDR 205 (389)
T ss_dssp CEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHH
T ss_pred eEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHH
Confidence 7888999876 5566666665543221 1578888887654 345555555544 45555432 344444443
Q ss_pred h
Q psy16637 175 F 175 (264)
Q Consensus 175 ~ 175 (264)
+
T Consensus 206 ~ 206 (389)
T 1fnn_A 206 A 206 (389)
T ss_dssp H
T ss_pred H
Confidence 3
No 95
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=28.79 E-value=2.5e+02 Score=27.93 Aligned_cols=113 Identities=12% Similarity=0.174 Sum_probs=67.4
Q ss_pred ccEEEEeCCCCCChhHHHHHHHHhcccceEEecC------CCCCHHHHHHHHHHHHHc-CCeEEeccccch-h-------
Q psy16637 53 VPAVLCSVPGYDASGRVDDLAAELGKQIASIAIG------SAEGFNQADNVINVAVRS-GKWVLLKNVHLA-P------- 117 (264)
Q Consensus 53 ~Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG------~~~~~~~a~~~l~~a~~~-G~WllL~N~hL~-~------- 117 (264)
.-+++.-+||..-|.....+|.+.+.++..++.+ -|++...++++++.|.+. +.-|+++++.-- .
T Consensus 512 ~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~ 591 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIG 591 (806)
T ss_dssp SCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------
T ss_pred ceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCC
Confidence 3489999999999999999999988776665432 234445778889999775 455666776521 1
Q ss_pred -------HHHHHHHHHhhccCCCCCceEEE--ecCCCCCChHhHhh--cceeeeecCCccH
Q psy16637 118 -------QWLVQLEKKLHSLQPHANFRLFL--TMEINPKVPVNLLR--AGRIFVFEPPPGI 167 (264)
Q Consensus 118 -------~~l~~L~~~l~~~~~h~~FRL~l--t~~~~~~~P~~lL~--~s~kv~~e~p~~l 167 (264)
..+.+|-..++.+.... ++++ +++-...+...+++ +--+..|=++|+.
T Consensus 592 ~~~~~~~rv~~~lL~~mdg~~~~~--~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~ 650 (806)
T 3cf2_A 592 DGGGAADRVINQILTEMDGMSTKK--NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 650 (806)
T ss_dssp ------CHHHHHHHHHHHSSCSSS--SEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----
T ss_pred CCchHHHHHHHHHHHHHhCCCCCC--CEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCH
Confidence 12333333333333333 4554 34544579999997 4444444444454
No 96
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=28.15 E-value=2.1e+02 Score=22.25 Aligned_cols=36 Identities=22% Similarity=0.305 Sum_probs=22.7
Q ss_pred ccEEEEeCCCCCC---hhHHHHHHHHhcccceEEecCCC
Q psy16637 53 VPAVLCSVPGYDA---SGRVDDLAAELGKQIASIAIGSA 88 (264)
Q Consensus 53 ~Pii~i~s~g~DP---~~~i~~lA~~~~~~~~~islG~~ 88 (264)
...|++++.|.+. .....+.+++.+..+..|.+|..
T Consensus 112 ~~~ivllTDG~~~~~~~~~~~~~~~~~~i~v~~igig~~ 150 (218)
T 3ibs_A 112 GRAIIVITDGENHEGGAVEAAKAAAEKGIQVSVLGVGMP 150 (218)
T ss_dssp CEEEEEEECCTTCCSCHHHHHHHHHTTTEEEEEEEESCT
T ss_pred CcEEEEEcCCCCCCCcHHHHHHHHHhcCCEEEEEEecCC
Confidence 3567777777543 23444445556677888899874
No 97
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A*
Probab=27.98 E-value=58 Score=30.30 Aligned_cols=47 Identities=23% Similarity=0.231 Sum_probs=31.0
Q ss_pred CCCccEEEEeCCCCCChhHHHHHHHHhcccceEEecCCC--CCHHHHHHH
Q psy16637 50 RGNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSA--EGFNQADNV 97 (264)
Q Consensus 50 ~~~~Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~~--~~~~~a~~~ 97 (264)
....|+.+.+|.|.| +..+..+|++.+.++..+++|.. .+...|+++
T Consensus 236 ~sd~~v~v~LSGGlD-Ss~vaala~~~~~~~~~~t~~~~~~~E~~~A~~v 284 (503)
T 1q15_A 236 PRFDTVGIPLSGGLD-SSLVTALASRHFKKLNTYSIGTELSNEFEFSQQV 284 (503)
T ss_dssp GGCSEEEEECCSSHH-HHHHHHHHTTTCSEEEEEEEEETTBCCHHHHHHH
T ss_pred hCCCcEEEECCCCHH-HHHHHHHHHHhCCCcEEEEEeCCCccHHHHHHHH
Confidence 346799999999999 44566777776656666666643 333444443
No 98
>2nly_A BH1492 protein, divergent polysaccharide deacetylase hypothetical; PFAM04748, structural PSI, protein structure initiative; 2.50A {Bacillus halodurans} SCOP: c.6.2.7
Probab=27.98 E-value=1.8e+02 Score=24.37 Aligned_cols=70 Identities=14% Similarity=0.136 Sum_probs=47.8
Q ss_pred EEEeCCCCCChhHHHHHHHHhcccceE--EecCC-CCCHHHHH----HHHHHHHHcCCeEEeccccch--------hHHH
Q psy16637 56 VLCSVPGYDASGRVDDLAAELGKQIAS--IAIGS-AEGFNQAD----NVINVAVRSGKWVLLKNVHLA--------PQWL 120 (264)
Q Consensus 56 i~i~s~g~DP~~~i~~lA~~~~~~~~~--islG~-~~~~~~a~----~~l~~a~~~G~WllL~N~hL~--------~~~l 120 (264)
++++..+..|-+...+.|++.|..+.. |=|-. .++...++ +++..|.++|.=|.+--.|-. ..|+
T Consensus 129 L~fvDS~Ts~~S~a~~~A~~~gvp~~~rdvFLD~~~~~~~~I~~ql~~a~~~A~~~G~aIaIGhp~p~~~~Ti~aL~~~~ 208 (245)
T 2nly_A 129 AFIIDSGTSPHSLIPQLAEELEVPYATRSIFLDNTHSSRKEVIKNMRKLAKKAKQGSEPIGIGHVGVRGDETYAGIRSML 208 (245)
T ss_dssp CEEEECCCCSSCSHHHHHHHTTCCEEECCEESCCTTCCHHHHHHHHHHHHHHHHTTSCCEEEEECSTTHHHHHHHHGGGH
T ss_pred CEEEcCCCCcccHHHHHHHHcCCCeEEeeEECCCCCCCHHHHHHHHHHHHHHHhhcCcEEEEECCCCCchhHHHHHHHHh
Confidence 455667778888999999999866433 44655 55544444 445577789999998877764 3466
Q ss_pred HHHHH
Q psy16637 121 VQLEK 125 (264)
Q Consensus 121 ~~L~~ 125 (264)
+.|++
T Consensus 209 ~~l~~ 213 (245)
T 2nly_A 209 DEFQA 213 (245)
T ss_dssp HHHHH
T ss_pred hHHhh
Confidence 66654
No 99
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=26.79 E-value=2.5e+02 Score=22.58 Aligned_cols=71 Identities=10% Similarity=0.040 Sum_probs=40.7
Q ss_pred HHHHHHHHhcccceEEecCCC--CCHHHH-----HHHHHHHHHcCCeEEeccccch---hHHHHHHHHHhhccCCCCCce
Q psy16637 68 RVDDLAAELGKQIASIAIGSA--EGFNQA-----DNVINVAVRSGKWVLLKNVHLA---PQWLVQLEKKLHSLQPHANFR 137 (264)
Q Consensus 68 ~i~~lA~~~~~~~~~islG~~--~~~~~a-----~~~l~~a~~~G~WllL~N~hL~---~~~l~~L~~~l~~~~~h~~FR 137 (264)
...++|++.|.+...+.-|.. +..+.+ ..+.+.|.+.|--+.++|.... ..-...+.++++.+. ++++
T Consensus 89 ~~i~~a~~lG~~~v~~~~g~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~~E~~~~~~~~~~~~~~~~~l~~~v~--~~~g 166 (272)
T 2q02_A 89 GLLRDAQGVGARALVLCPLNDGTIVPPEVTVEAIKRLSDLFARYDIQGLVEPLGFRVSSLRSAVWAQQLIREAG--SPFK 166 (272)
T ss_dssp HHHHHHHHHTCSEEEECCCCSSBCCCHHHHHHHHHHHHHHHHTTTCEEEECCCCSTTCSCCCHHHHHHHHHHHT--CCCE
T ss_pred HHHHHHHHhCCCEEEEccCCCchhHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCcccccCHHHHHHHHHHhC--cCeE
Confidence 455667777876555433422 222222 3445667778999999997521 112344555666555 6777
Q ss_pred EEE
Q psy16637 138 LFL 140 (264)
Q Consensus 138 L~l 140 (264)
+-+
T Consensus 167 ~~~ 169 (272)
T 2q02_A 167 VLL 169 (272)
T ss_dssp EEE
T ss_pred EEE
Confidence 765
No 100
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*
Probab=26.03 E-value=61 Score=30.29 Aligned_cols=48 Identities=19% Similarity=0.323 Sum_probs=31.9
Q ss_pred CCCccEEEEeCCCCCChhHHHHHHHHhcccceEEecCCC--CCHHHHHHHH
Q psy16637 50 RGNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSA--EGFNQADNVI 98 (264)
Q Consensus 50 ~~~~Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~~--~~~~~a~~~l 98 (264)
.+..|+.+.+|.|.| +..|..+|++.+.++..+++|-. .+...|+++-
T Consensus 239 ~sd~~vgv~LSGGlD-SS~vaala~~~~~~v~tfti~~~~~~E~~~A~~vA 288 (513)
T 1jgt_A 239 TPGDTPLVVLSGGID-SSGVAACAHRAAGELDTVSMGTDTSNEFREARAVV 288 (513)
T ss_dssp CTTCCCEEECCSSHH-HHHHHHHHHHHHSSCEEEEEECSSCCCHHHHHHHH
T ss_pred hCCCcEEEECCCcHH-HHHHHHHHHHhCCCceEEEcCCCCCCHHHHHHHHH
Confidence 446799999999999 45567777776666777776653 3334554443
No 101
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=24.87 E-value=2.6e+02 Score=22.24 Aligned_cols=31 Identities=29% Similarity=0.439 Sum_probs=25.6
Q ss_pred EEEEeCCCCCChhHHHHHHHHhcccceEEecCC
Q psy16637 55 AVLCSVPGYDASGRVDDLAAELGKQIASIAIGS 87 (264)
Q Consensus 55 ii~i~s~g~DP~~~i~~lA~~~~~~~~~islG~ 87 (264)
|+++-+||+.-+..-..+|++.| +.+||.|.
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g--~~~istGd 33 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKG--FVHISTGD 33 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC--CEEEEHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHC--CeEEcHHH
Confidence 56778999999999999999886 56788775
No 102
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=24.83 E-value=1.3e+02 Score=23.11 Aligned_cols=72 Identities=15% Similarity=0.090 Sum_probs=37.4
Q ss_pred cEEEEeCCCC---CCh--hHHHHHHHHhcccceEEecCCCCCHHHHHHHHHHHHHc--CCe-EEeccccchhHHHHHHHH
Q psy16637 54 PAVLCSVPGY---DAS--GRVDDLAAELGKQIASIAIGSAEGFNQADNVINVAVRS--GKW-VLLKNVHLAPQWLVQLEK 125 (264)
Q Consensus 54 Pii~i~s~g~---DP~--~~i~~lA~~~~~~~~~islG~~~~~~~a~~~l~~a~~~--G~W-llL~N~hL~~~~l~~L~~ 125 (264)
.+|++.+.|. |+. ..+.+.+++.|..+..|.+|.......-...|+..+.. |.. ..+.|..--...+..+.+
T Consensus 112 ~~iillTDG~~~~~~~~~~~~~~~~~~~gi~i~~igvG~~~~~~~~~~~L~~iA~~~~g~~~~~~~~~~~l~~~~~~i~~ 191 (198)
T 1n3y_A 112 KILIVITDGKKEGDSLDYKDVIPMADAAGIIRYAIGVGLAFQNRNSWKELNDIASKPSQEHIFKVEDFDALKDIQNQLKE 191 (198)
T ss_dssp EEEEEEESSCCBSCSSCHHHHHHHHHHTTCEEEEEEESGGGGSSTTHHHHHHHSCSSSGGGEEEESSGGGGGGGHHHHHH
T ss_pred eEEEEECCCCCCCCcccHHHHHHHHHHCCCEEEEEEccccccccccHHHHHHHHcCCCcccEEEeCCHHHHHHHHHHHHh
Confidence 4666666664 443 44455566677777788887653100113455555553 344 445554333344455443
No 103
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=24.82 E-value=2.9e+02 Score=22.63 Aligned_cols=112 Identities=14% Similarity=0.194 Sum_probs=62.3
Q ss_pred cEEEEeCCCCCChhHHHHHHHHhcccceEEecC------CCCCHHHHHHHHHHHHH-cCCeEEeccccchh---------
Q psy16637 54 PAVLCSVPGYDASGRVDDLAAELGKQIASIAIG------SAEGFNQADNVINVAVR-SGKWVLLKNVHLAP--------- 117 (264)
Q Consensus 54 Pii~i~s~g~DP~~~i~~lA~~~~~~~~~islG------~~~~~~~a~~~l~~a~~-~G~WllL~N~hL~~--------- 117 (264)
.++++-++|+.-|..+..+|...+..+..++-. .++.......+++.+.. ....++++|++...
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~ 154 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGG 154 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC-------
T ss_pred eEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCC
Confidence 488889999999999999998776444444311 11111223345666553 34567889996321
Q ss_pred ---HHHHHHHHHhhcc---CCCCCceEEEecCCCCCChHhHhhc---ceeeeecCCc
Q psy16637 118 ---QWLVQLEKKLHSL---QPHANFRLFLTMEINPKVPVNLLRA---GRIFVFEPPP 165 (264)
Q Consensus 118 ---~~l~~L~~~l~~~---~~h~~FRL~lt~~~~~~~P~~lL~~---s~kv~~e~p~ 165 (264)
.+...+.+.+..+ +......+..+++....++..++.. ...+.+..|+
T Consensus 155 ~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~ 211 (278)
T 1iy2_A 155 GNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPD 211 (278)
T ss_dssp -CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCC
T ss_pred cchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcC
Confidence 1122333334333 3333344444556556788888863 2455555543
No 104
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=24.58 E-value=1.8e+02 Score=24.49 Aligned_cols=64 Identities=16% Similarity=0.162 Sum_probs=35.9
Q ss_pred CccEEEEeCCCC-----CChhHHHHHHHHhcccceEEecCCCCCHH-HHHHHHHH-HHHc-CCeEEeccccch
Q psy16637 52 NVPAVLCSVPGY-----DASGRVDDLAAELGKQIASIAIGSAEGFN-QADNVINV-AVRS-GKWVLLKNVHLA 116 (264)
Q Consensus 52 ~~Pii~i~s~g~-----DP~~~i~~lA~~~~~~~~~islG~~~~~~-~a~~~l~~-a~~~-G~WllL~N~hL~ 116 (264)
..-+|++++.|. ||.. ..++|++.|.++.+|.+|.+.... ..+..|+. |... |.......-+|+
T Consensus 9 ~~k~iillTDG~~~~g~~p~~-aa~~a~~~gi~v~tIGig~~~~~~~~~~~~L~~IA~~tGG~yf~a~~~~l~ 80 (242)
T 3rag_A 9 TIRQILVITDGCSNIGPDPVE-AARRAHRHGIVVNVIGIVGRGDAGEQGYQEAHSIADAGGGMCRIVQPADIS 80 (242)
T ss_dssp CEEEEEEEESSCCCSSSCHHH-HHHHHHHTTCEEEEEEECCSSSCTTCCCHHHHHHHHHTTSCEEEECGGGHH
T ss_pred CccEEEEEccCCCCCCCCHHH-HHHHHHHCCCEEEEEEecCCccccchhHHHHHHHHHhcCCeEEEeeHHHHH
Confidence 344566666664 5664 456788889999999997653110 11233443 3333 556555444444
No 105
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=24.24 E-value=2.3e+02 Score=21.37 Aligned_cols=25 Identities=12% Similarity=0.268 Sum_probs=19.9
Q ss_pred cEEEEeCCCCCChhHHHHHHHHhcc
Q psy16637 54 PAVLCSVPGYDASGRVDDLAAELGK 78 (264)
Q Consensus 54 Pii~i~s~g~DP~~~i~~lA~~~~~ 78 (264)
-|++.-.+|+.-+.....||++.|.
T Consensus 11 ~I~l~G~~GsGKsT~~~~La~~l~~ 35 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQCEKIVQKYGY 35 (196)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4666678899999988899888764
No 106
>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A
Probab=23.72 E-value=64 Score=25.00 Aligned_cols=31 Identities=10% Similarity=0.068 Sum_probs=26.5
Q ss_pred cCCCccEEEEeCCCCCChhHHHHHHHHhccc
Q psy16637 49 LRGNVPAVLCSVPGYDASGRVDDLAAELGKQ 79 (264)
Q Consensus 49 s~~~~Pii~i~s~g~DP~~~i~~lA~~~~~~ 79 (264)
.+...|+++-+.+|.|-...|+++|++.+.+
T Consensus 15 ~~~~r~~vlrL~~Gedl~~~i~~~~~~~gi~ 45 (154)
T 2hx0_A 15 ASTARFYALRLLPGQEVFSQLHAFVQQNQLR 45 (154)
T ss_dssp CCCCEEEEEEECTTCBHHHHHHHHHHHHTCS
T ss_pred CCCccEEEEEECCCCcHHHHHHHHHHHhCCC
Confidence 3445789999999999999999999998754
No 107
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=23.15 E-value=3.5e+02 Score=23.71 Aligned_cols=34 Identities=6% Similarity=0.160 Sum_probs=25.8
Q ss_pred HHHHHHHHH--cCCeEEe--ccccchhHHHHHHHHHhh
Q psy16637 95 DNVINVAVR--SGKWVLL--KNVHLAPQWLVQLEKKLH 128 (264)
Q Consensus 95 ~~~l~~a~~--~G~WllL--~N~hL~~~~l~~L~~~l~ 128 (264)
...++.+.. ++..+++ ++|.++++|++-+++.++
T Consensus 88 ~~al~~vf~~~~~~~vIiLEDDl~~spdF~~y~~~~l~ 125 (343)
T 1fo8_A 88 RWALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQATYP 125 (343)
T ss_dssp HHHHHHHHTTSCCSEEEEEETTEEECTTHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCEEEEEcCCCeECHHHHHHHHHHHH
Confidence 355666666 6777776 779999999988877765
No 108
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=22.92 E-value=3.1e+02 Score=22.71 Aligned_cols=37 Identities=8% Similarity=0.097 Sum_probs=24.1
Q ss_pred CCeEEeccccch-----hHHHHHHHHHhhccCCCCCceEEEecCC
Q psy16637 105 GKWVLLKNVHLA-----PQWLVQLEKKLHSLQPHANFRLFLTMEI 144 (264)
Q Consensus 105 G~WllL~N~hL~-----~~~l~~L~~~l~~~~~h~~FRL~lt~~~ 144 (264)
.-.|+|+++|.. ..|+..|...... .++.++++|+.+
T Consensus 138 ~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~---~~~~~~i~~g~~ 179 (357)
T 2fna_A 138 NVIIVLDEAQELVKLRGVNLLPALAYAYDN---LKRIKFIMSGSE 179 (357)
T ss_dssp CEEEEEETGGGGGGCTTCCCHHHHHHHHHH---CTTEEEEEEESS
T ss_pred CeEEEEECHHHhhccCchhHHHHHHHHHHc---CCCeEEEEEcCc
Confidence 446788999884 3566666544432 247788888764
No 109
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1
Probab=22.22 E-value=1.4e+02 Score=28.14 Aligned_cols=40 Identities=25% Similarity=0.361 Sum_probs=27.8
Q ss_pred cCCCccEEEEeCCCCCChhHHHHHHHHhcc--------------cceEEecCCCC
Q psy16637 49 LRGNVPAVLCSVPGYDASGRVDDLAAELGK--------------QIASIAIGSAE 89 (264)
Q Consensus 49 s~~~~Pii~i~s~g~DP~~~i~~lA~~~~~--------------~~~~islG~~~ 89 (264)
..+..|+.+.+|.|.|-+ .|..+|++.+. +++.+++|-..
T Consensus 223 l~sdvpvgv~LSGGlDSS-~iaala~~~~~~~~~~~~~~~a~~~~l~tfsig~~~ 276 (553)
T 1ct9_A 223 LMSDVPYGVLLSGGLDSS-IISAITKKYAARRVEDQERSEAWWPQLHSFAVGLPG 276 (553)
T ss_dssp TCCSSCEEEECCSSHHHH-HHHHHHHHHC----------------CEEEEEESTT
T ss_pred hcCCCceEEeCCCCccHH-HHHHHHHHhhccccccccccccccCceeEEEecCCC
Confidence 445679999999999944 56667766542 27778887654
No 110
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}
Probab=21.08 E-value=2.5e+02 Score=21.26 Aligned_cols=33 Identities=9% Similarity=-0.057 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHcCCeEEeccccchhHHHHHHHH
Q psy16637 93 QADNVINVAVRSGKWVLLKNVHLAPQWLVQLEK 125 (264)
Q Consensus 93 ~a~~~l~~a~~~G~WllL~N~hL~~~~l~~L~~ 125 (264)
.|.+.+...++.|+.|++.-..-...+-+.|.+
T Consensus 127 eai~~~~~~~~~gDvVLv~Gsg~~~~~~~~l~~ 159 (163)
T 3mvn_A 127 ELVMRIVQQAKPNDHILIMSNGAFGGIHQKLLT 159 (163)
T ss_dssp HHHHHHHHHCCTTCEEEEECSSCGGGHHHHHHH
T ss_pred HHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHH
Confidence 444444445567778777665444444444443
Done!