RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16637
(264 letters)
>gnl|CDD|217325 pfam03028, Dynein_heavy, Dynein heavy chain and region D6 of dynein
motor. This family represents the C-terminal region of
dynein heavy chain. The chain also contains ATPase
activity and microtubule binding ability and acts as a
motor for the movement of organelles and vesicles along
microtubules. Dynein is also involved in cilia and
flagella movement. The dynein subunit consists of at
least two heavy chains and a number of intermediate and
light chains. The 380 kDa motor unit of dynein belongs
to the AAA class of chaperone-like ATPases. The core of
the 380 kDa motor unit contains a concatenated chain of
six AAA modules, of which four correspond to the ATP
binding sites with P-loop signatures described
previously, and two are modules in which the P loop has
been lost in evolution. This C-terminal domain carries
the D6 region of the dynein motor where the P-loop has
been lost in evolution but the general structure of a
potential ATP binding site appears to be retained.
Length = 706
Score = 335 bits (862), Expect = e-111
Identities = 114/247 (46%), Positives = 150/247 (60%), Gaps = 10/247 (4%)
Query: 4 LLFIQALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVPAVLCSVPGY 63
LL ++ALR DR+ AA FVS GE F+ + LDL I E E + P PG
Sbjct: 72 LLLLRALRPDRMTYAARNFVSEKLGEKFVEP--QPLDLSKIYE-ESSPSTPIFFILSPGV 128
Query: 64 DASGRVDDLAAELG--KQIASIAIGSAEGFNQADNVINVAVRSGKWVLLKNVHLAPQWLV 121
D S V+ LA ++G K+ S+++G +G A+ I A +SG WV+L+N+HLAP WL
Sbjct: 129 DPSKDVEKLAKKMGFGKKFHSVSLGQGQGP-IAEKAIETAAKSGHWVMLQNIHLAPSWLP 187
Query: 122 QLEKKLHSLQP--HANFRLFLTMEINPKVPVNLLRAGRIFVFEPPPGIKANLLRTFSTV- 178
LEKKL SL P H +FRLFLT E P +P+ LL+ EPP G+KANLLR S+
Sbjct: 188 TLEKKLESLTPGSHPDFRLFLTAEPAPSIPIGLLQNSIKITNEPPTGLKANLLRALSSFT 247
Query: 179 -PATRMMKAPNERARLYFLLAWFHAIVQERLRYVPLGWSKFYEFNESDLRVACDTLDTWI 237
M K P E R+ FLL +FHA+VQER ++ PLGW+K YEFNE DLR++ D LD ++
Sbjct: 248 QETLEMCKKPAEFKRILFLLCFFHAVVQERRKFGPLGWNKSYEFNEGDLRISLDVLDNYL 307
Query: 238 DSTAMGK 244
D+ A K
Sbjct: 308 DANAPDK 314
>gnl|CDD|227570 COG5245, DYN1, Dynein, heavy chain [Cytoskeleton].
Length = 3164
Score = 80.8 bits (199), Expect = 4e-17
Identities = 26/146 (17%), Positives = 43/146 (29%), Gaps = 6/146 (4%)
Query: 85 IGSAEGFNQADNVINVAVRSGKWVLLKNVHLAPQWLVQL-----EKKLHSLQPHANFRLF 139
+GS E A + + W + N+ L+ W + S ++
Sbjct: 2897 LGSKENEVYAVLNSLFSRKEKSWFEVYNISLSFGWFKRYVEDVVYPIKASRVCGKVKNMW 2956
Query: 140 LTMEINPKVPVNLLRAGRIFVFEPPPGIKANLLRTFSTVPATRMMKAPNERARLYFLLAW 199
+M +P+ LL A FV P F L+W
Sbjct: 2957 TSMVDADMLPIQLLIAIDSFVSSTYPETGCGYADLVEIDRYPFDY-TLVIACDDAFYLSW 3015
Query: 200 FHAIVQERLRYVPLGWSKFYEFNESD 225
HA V + P ++ F + D
Sbjct: 3016 EHAAVASVISAGPKENNEEIYFGDKD 3041
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 36.9 bits (85), Expect = 0.010
Identities = 33/134 (24%), Positives = 51/134 (38%), Gaps = 34/134 (25%)
Query: 49 LRGNVPAVLCSVPGYDASGR-------VDDLAAELGKQIASIAIGSAE------GFNQAD 95
L + +VP Y GR + +L E G++I I + G +
Sbjct: 139 LAKEAVDLKIAVPIYLEGGRGSGKSFLISELCDEGGQRIVEIHLREITDAKVLIGTYTSP 198
Query: 96 N---------VINVAVRSGKWVLLKNVHLAP----QWLVQLEKKLHSLQP--------HA 134
V+ AV SG W+L K + AP +L+ L +K L P H
Sbjct: 199 KPGDFEWMKGVLIEAVVSGDWILFKRIDKAPHGVLSYLLTLLEKRRLLIPSRGETVLAHD 258
Query: 135 NFRLFLTMEINPKV 148
NF++F T + K+
Sbjct: 259 NFQIFFTSSMKTKI 272
Score = 33.8 bits (77), Expect = 0.095
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 18/72 (25%)
Query: 91 FNQADNVINVAVRSGKWVLLKNVHLA--------------PQWLVQLEKK--LHSLQPHA 134
F + ++ +R+G+W+LL ++LA + + L + L ++ H
Sbjct: 622 FVFVEGILVKCMRNGEWLLLDEINLASEETLELIDGLLGKKESGILLSESGDLRPIRIHP 681
Query: 135 NFRLFLTMEINP 146
FRLF M NP
Sbjct: 682 GFRLFGCM--NP 691
Score = 31.1 bits (70), Expect = 0.81
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 15/59 (25%)
Query: 101 AVRSGKWVLLKNVHLAPQWLVQLEKKL-------------HSLQPHANFRLFLTMEINP 146
A+R G W++L ++LAP +++ +L + PH NFRLF T NP
Sbjct: 952 ALRRGYWIVLDELNLAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQ--NP 1008
Score = 28.4 bits (63), Expect = 4.7
Identities = 11/14 (78%), Positives = 12/14 (85%)
Query: 130 LQPHANFRLFLTME 143
L+PH NFRLFLT E
Sbjct: 2054 LKPHPNFRLFLTEE 2067
Score = 27.7 bits (61), Expect = 8.0
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 15/59 (25%)
Query: 101 AVRSGKWVLLKNVHLAPQWLVQ-----LEKKLHSLQP--------HANFRLFLTMEINP 146
A+R G WVLL ++LA Q +++ L+ + + P H NFR+F NP
Sbjct: 1608 AMRDGGWVLLDEINLASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQ--NP 1664
>gnl|CDD|240439 PTZ00491, PTZ00491, major vault protein; Provisional.
Length = 850
Score = 31.1 bits (71), Expect = 0.68
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Query: 23 VSAVFGEAFMLSAEREL---DLPHIVE 46
V AV G+ +ML A EL LP VE
Sbjct: 396 VRAVHGKPYMLGAHEELWEKPLPPNVE 422
>gnl|CDD|173550 PTZ00357, PTZ00357, methyltransferase; Provisional.
Length = 1072
Score = 28.9 bits (64), Expect = 3.8
Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 14/101 (13%)
Query: 109 LLKNVHLAP-QWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPP-- 165
L + V LAP Q E + H + M+ + PV+L RA + +FE PP
Sbjct: 890 LSRAVTLAPPQPCWTFEHRFHGGSDNDYKGDRGAMK--RREPVSLERAASL-LFEVPPCG 946
Query: 166 ------GIKANLLRTFSTVPATRMMKAPNERARLYFLLAWF 200
G + +L +T PAT + AP ER + +WF
Sbjct: 947 RCCGLAGYFSAVLYQSATAPATIIATAPVERTEDMY--SWF 985
>gnl|CDD|222882 PHA02567, rnh, RnaseH; Provisional.
Length = 304
Score = 27.7 bits (62), Expect = 5.5
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 12/78 (15%)
Query: 43 HIVEHELRGNVPAVLCSVPGYDASGRVDDLAAELGK----QIASIAIGSAEG-FNQADNV 97
+ + E++ N+P + + +A DD+ A L K + + I S++G F Q
Sbjct: 109 NKIVDEIKENMPYKVMKIDKAEA----DDIIAVLTKKFSAEGRPVLIVSSDGDFTQLHKY 164
Query: 98 INVAVRS---GKWVLLKN 112
V S KWV K
Sbjct: 165 PGVKQWSPMQKKWVKPKY 182
>gnl|CDD|129656 TIGR00565, trpE_proteo, anthranilate synthase component I,
proteobacterial subset. This enzyme resembles some
other chorismate-binding enzymes, including
para-aminobenzoate synthase (pabB) and isochorismate
synthase. There is a fairly deep split between two sets,
seen in the pattern of gaps as well as in amino acid
sequence differences. This group includes proteobacteria
such as E. coli and Helicobacter pylori but also the
gram-positive organism Corynebacterium glutamicum. The
second group includes eukaryotes, archaea, and most
other bacterial lineages; sequences from the second
group may resemble pabB more closely than other trpE
from this group [Amino acid biosynthesis, Aromatic amino
acid family].
Length = 498
Score = 27.9 bits (62), Expect = 5.7
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 7/50 (14%)
Query: 126 KLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFV------FEPPPGIKA 169
KL SL RL +++ PK P + G +F FE P +KA
Sbjct: 101 KLCSLSVFDALRLLQSVKNKPKEPFAMFFGG-LFSYDLVAGFEDLPHLKA 149
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.136 0.413
Gapped
Lambda K H
0.267 0.0693 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,838,601
Number of extensions: 1346351
Number of successful extensions: 1131
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1122
Number of HSP's successfully gapped: 25
Length of query: 264
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 169
Effective length of database: 6,723,972
Effective search space: 1136351268
Effective search space used: 1136351268
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.2 bits)