RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16637
(264 letters)
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 323 bits (830), Expect = e-102
Identities = 147/248 (59%), Positives = 189/248 (76%), Gaps = 2/248 (0%)
Query: 1 MYQLLFIQALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVPAVLCSV 60
++L ++A SDRV +H FV +VFGE F+ + +ELD+ +IVE E++ + P +LCSV
Sbjct: 2595 FRKILLMKAFHSDRVLQYSHSFVCSVFGEDFLNT--QELDMANIVEKEVKSSSPLLLCSV 2652
Query: 61 PGYDASGRVDDLAAELGKQIASIAIGSAEGFNQADNVINVAVRSGKWVLLKNVHLAPQWL 120
PGYDAS +VDDLA +L KQ S AIGS EGF A+ I A +SG WVLLKN+HLAPQWL
Sbjct: 2653 PGYDASSKVDDLALQLHKQYKSFAIGSPEGFELAEKSIYAAAKSGTWVLLKNIHLAPQWL 2712
Query: 121 VQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPPGIKANLLRTFSTVPA 180
VQLEKKLHSL PH +FRLF+T EI+P +P NLLR +F +E PPG+KANLL TF +PA
Sbjct: 2713 VQLEKKLHSLSPHPSFRLFMTSEIHPALPANLLRMSNVFSYENPPGVKANLLHTFIGIPA 2772
Query: 181 TRMMKAPNERARLYFLLAWFHAIVQERLRYVPLGWSKFYEFNESDLRVACDTLDTWIDST 240
TRM K P ER+R+YFLLAWFHAI+QERLRY+PLGW+KF+EFN++DLR A D++D W+D
Sbjct: 2773 TRMDKQPAERSRIYFLLAWFHAIIQERLRYIPLGWTKFFEFNDADLRGALDSIDYWVDLY 2832
Query: 241 AMGKRDYA 248
+ G+ +
Sbjct: 2833 SKGRSNID 2840
Score = 30.3 bits (68), Expect = 0.81
Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 16/67 (23%)
Query: 91 FNQAD--NVINVAVRSGKWVLLKNV-HLAPQWLVQLEKKLHSLQP-------------HA 134
F + + A+R G +L+++V ++ P L K++
Sbjct: 2214 FLDSSFMKNLESALRFGCPLLVQDVENIDPVLNPVLNKEIRKKGGRILIRLGDQDVDFSP 2273
Query: 135 NFRLFLT 141
+F +FL
Sbjct: 2274 SFMIFLF 2280
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 233 bits (597), Expect = 2e-70
Identities = 57/249 (22%), Positives = 107/249 (42%), Gaps = 16/249 (6%)
Query: 6 FIQALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVPAVLCSVPGYDA 65
+ + +A + F + F + + ++ + + S D
Sbjct: 2350 LWDYVTTKSYISALNWFKNEFFVDEWNIADVVANSDNNYFT----------MASERDVDG 2399
Query: 66 SGRVDDLAAELGKQIASIAIGSAEGFNQADNVINVAVRSGKWVLLKNVHLAPQWL-VQLE 124
+ ++ +LA + + I +GS E N A I+ + G W+LL+N+ ++ W+ L
Sbjct: 2400 TFKLIELAKASKESLKIIPLGSIENLNYAQEEISKSKIEGGWILLQNIQMSLSWVKTYLH 2459
Query: 125 KKLHSL---QPHANFRLFLTMEI-NPKVPVNLLRAGRIFVFEPPPGIKANLLRTFSTVPA 180
K + + H F++F+T + K+P LL+ FV+E PGI + + +
Sbjct: 2460 KHVEETKAAEEHEKFKMFMTCHLTGDKLPAPLLQRTDRFVYEDIPGILDTVKDLWGS-QF 2518
Query: 181 TRMMKAPNERARLYFLLAWFHAIVQERLRYVPLGWSKFYEFNESDLRVACDTLDTWIDST 240
+ FLL+WFHA++ R R VP G+SK Y FN+ D + A L+ + +
Sbjct: 2519 FTGKISGVWSVYCTFLLSWFHALITARTRLVPHGFSKKYYFNDCDFQFASVYLENVLATN 2578
Query: 241 AMGKRDYAM 249
+ +A
Sbjct: 2579 STNNIPWAQ 2587
Score = 27.1 bits (60), Expect = 8.8
Identities = 10/69 (14%), Positives = 24/69 (34%), Gaps = 20/69 (28%)
Query: 91 FNQAD--NVINVAVRSGKWVLLKNV----------------HLAPQWLVQLEKKLHSLQP 132
F + + A+R G V++++ H + V++ +
Sbjct: 2034 FLEEGFVKRLENAIRFGSVVIIQDGEFFDPIISRLISREFNHAGNRVTVEIGDHEVDVSG 2093
Query: 133 HANFRLFLT 141
+F+LF+
Sbjct: 2094 --DFKLFIH 2100
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.2 bits (96), Expect = 3e-04
Identities = 45/258 (17%), Positives = 73/258 (28%), Gaps = 106/258 (41%)
Query: 1 MYQLLFIQALRSDRV-------PAAAHIFVSAVFGEA-FMLSAERELDLPHIVEH--ELR 50
+LF +R P+ + G MLS L + ++ +
Sbjct: 299 AITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSI-SNLTQEQVQDYVNKTN 357
Query: 51 GNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAEGFNQADNVINVAVRSGKWVLL 110
++PA GKQ+ I++ N A N+ V SG
Sbjct: 358 SHLPA---------------------GKQV-EISL-----VNGAKNL----VVSG----- 381
Query: 111 KNVHLAPQWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPPGIKAN 170
PQ L L L K P L ++ RI P K
Sbjct: 382 -----PPQSLYGLNLTLRKA----------------KAPSGLDQS-RI----PFSERKLK 415
Query: 171 LLRTFSTVPATRMMKAPNERARLYFLLAWFH--------AIVQERLRYVPLGWSK----- 217
F +P +P FH ++ + L + ++
Sbjct: 416 FSNRF--LPVA----SP------------FHSHLLVPASDLINKDLVKNNVSFNAKDIQI 457
Query: 218 --FYEFNESDLRVACDTL 233
+ F+ SDLRV ++
Sbjct: 458 PVYDTFDGSDLRVLSGSI 475
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.0 bits (82), Expect = 0.011
Identities = 37/266 (13%), Positives = 79/266 (29%), Gaps = 74/266 (27%)
Query: 26 VFGEAFMLSAERELDLPHIVEHELRG-----NVPAVLCSVPGYDASGRVDDLAAELGKQI 80
VF +AF+ D + + + + ++ S + R+ +++
Sbjct: 24 VFEDAFV----DNFDCKDV-QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM 78
Query: 81 ASIAIGSAEGFN------------------------QADNVINVAVRSGKWVLLKNVHLA 116
+ N Q D + N K+ NV
Sbjct: 79 VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY----NVS-R 133
Query: 117 PQWLVQLEKKLHSLQPHANFRLF---------LTMEINPKVPVNLLRAGRIF------VF 161
Q ++L + L L+P N + + +++ V +IF
Sbjct: 134 LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN 193
Query: 162 EPPPGIK--ANLLRTFSTVPATRMMKAPNERARLYFLLAWFHAIVQER--------LRYV 211
P ++ LL +R + N + R++ + A +++ + L V
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253
Query: 212 PLGWSK--FYEFNESDLRVACDTLDT 235
+ + FN ++C L T
Sbjct: 254 ---QNAKAWNAFN-----LSCKILLT 271
Score = 32.5 bits (73), Expect = 0.17
Identities = 37/205 (18%), Positives = 66/205 (32%), Gaps = 59/205 (28%)
Query: 68 RVDDLAAELGK----QIASIAIGSAEGFNQADNVINVAVRSGKWVLLKNVHLAPQWLVQL 123
R DL E+ +++ IA +G DN K V + +
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW--------KHVNCDKLTTI------I 359
Query: 124 EKKLHSLQPHANFRLFLTMEINP---KVPVNLLRAGRIFVFEPP---PGIKANLLRTFST 177
E L+ L+P ++F + + P +P LL + F+ + N L +S
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL---SLIWFDVIKSDVMVVVNKLHKYSL 416
Query: 178 VPATRMMKAPNERAR----LYFLL-------AWFHAIVQERLRYVPLGWSKFYEFNESDL 226
V K P E +Y L H + + Y K ++ ++
Sbjct: 417 V-----EKQPKESTISIPSIYLELKVKLENEYALHRSIVD--HYNIP---KTFDSDD--- 463
Query: 227 RVACDTLDTWIDSTAMGKRDYAMYH 251
+ LD + S + +H
Sbjct: 464 -LIPPYLDQYFYS-------HIGHH 480
>2bw2_A Bypass of forespore C; sporulation, signaling protein, BOFC, sigmak
checkpoint; NMR {Bacillus subtilis}
Length = 140
Score = 30.8 bits (69), Expect = 0.22
Identities = 7/39 (17%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 156 GRIFVFEPPPGIKANLLRTFSTVPATRMMKAPNERARLY 194
G I F P + +++F + R+ + + L
Sbjct: 81 GVISTFHGRPEPASEPIQSFFQIDLERL--ESHMQKNLL 117
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold,
GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A
{Medicago truncatula} PDB: 3hbj_A*
Length = 454
Score = 27.6 bits (62), Expect = 4.2
Identities = 12/52 (23%), Positives = 17/52 (32%), Gaps = 2/52 (3%)
Query: 114 HLAPQWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPP 165
H AP L+ L KK+ + P F F T N + +
Sbjct: 26 HAAP--LLSLVKKIATEAPKVTFSFFCTTTTNDTLFSRSNEFLPNIKYYNVH 75
>3r2q_A Uncharacterized GST-like protein YIBF; transferase, glutathione;
HET: GSH; 1.05A {Escherichia coli}
Length = 202
Score = 27.3 bits (61), Expect = 4.8
Identities = 21/120 (17%), Positives = 37/120 (30%), Gaps = 33/120 (27%)
Query: 143 EINP--KVPVNLLRAGRIFVFEPPPGIKANLLRTFSTV---------PATRMM-KAPNER 190
+ NP KVPV L+ F+ S + A M+ + P E
Sbjct: 42 QFNPLGKVPV-LVTEEGECWFD-------------SPIIAEYIELMNVAPAMLPRDPLES 87
Query: 191 ARLYFLLAWFHAI-------VQERLRYVPLGWSKFYEFNESDLRVACDTLDTWIDSTAMG 243
R+ + A I V+E+ R + + D L+ ++ +
Sbjct: 88 LRVRKIEALADGIMDAGLVSVREQARPAAQQSEDELLRQREKINRSLDVLEGYLVDGTLK 147
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.5 bits (57), Expect = 6.1
Identities = 7/28 (25%), Positives = 13/28 (46%), Gaps = 8/28 (28%)
Query: 125 KKLH-SLQPHANFRLFLTMEINPKVPVN 151
KKL SL+ +A+ + P + +
Sbjct: 23 KKLQASLKLYAD-------DSAPALAIK 43
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine
biosynthesis, seven-stranded BETE-strand, PYR
5'-phosphate; HET: PLP; 2.50A {Methanococcus
maripaludis} SCOP: c.67.1.9
Length = 456
Score = 27.3 bits (60), Expect = 6.4
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 6/41 (14%)
Query: 44 IVEHELRGNVPAVLCSVPGYDASGRVDDLAAELGKQIASIA 84
I + GN P VL ++ + DD+ IA I
Sbjct: 223 IKKEIELGNRPCVLSTLTFF-PPRNSDDIVE-----IAKIC 257
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific]
1,mitochondrial; oxidoreductase, thioester reduction,
fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2
c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Length = 364
Score = 27.0 bits (60), Expect = 6.6
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 12/49 (24%)
Query: 59 SVPGYDASGRVDDLAAELGKQIASIAIGSAEGFNQADNVINVAVRSGKW 107
+ G + V ++G ++S+ G D VI V G W
Sbjct: 74 APCGNEGLFEVI----KVGSNVSSLEAG--------DWVIPSHVNFGTW 110
>3ed4_A Arylsulfatase; structural genomics, PSI-2, protein structure INI
NEW YORK structural genomix research consortium,
NYSGXRC, transferase; 1.70A {Escherichia coli}
Length = 502
Score = 26.9 bits (60), Expect = 7.0
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 99 NVAVRSGKWVLLKNVHLAPQWLVQLEK 125
A+R G W ++ + + P++L L+
Sbjct: 419 EWAIRDGDWKMIIDRNNKPKYLYNLKS 445
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.136 0.413
Gapped
Lambda K H
0.267 0.0625 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,135,142
Number of extensions: 251130
Number of successful extensions: 448
Number of sequences better than 10.0: 1
Number of HSP's gapped: 438
Number of HSP's successfully gapped: 22
Length of query: 264
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 172
Effective length of database: 4,133,061
Effective search space: 710886492
Effective search space used: 710886492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (25.6 bits)