RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16637
         (264 letters)



>d1txga1 a.100.1.6 (A:181-335) Glycerol-3-phosphate dehydrogenase
           {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 155

 Score = 26.6 bits (58), Expect = 2.2
 Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 3/38 (7%)

Query: 70  DDLAAELG---KQIASIAIGSAEGFNQADNVINVAVRS 104
           D +  E+    K + SIAI    G+    NV     + 
Sbjct: 1   DIIGTEITSALKNVYSIAIAWIRGYESRKNVEMSNAKG 38


>d1pa2a_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress
          (Arabidopsis thaliana), peroxidase A2 [TaxId: 3702]}
          Length = 306

 Score = 26.2 bits (57), Expect = 4.9
 Identities = 16/40 (40%), Positives = 22/40 (55%)

Query: 58 CSVPGYDASGRVDDLAAELGKQIASIAIGSAEGFNQADNV 97
          C V G DAS  +DD  +   ++ A   + SA GFN  DN+
Sbjct: 45 CFVNGCDASILLDDTGSIQSEKNAGPNVNSARGFNVVDNI 84


>d1fhfa_ a.93.1.1 (A:) Plant peroxidase {Soybean (Glycine max)
          [TaxId: 3847]}
          Length = 304

 Score = 25.4 bits (55), Expect = 8.4
 Identities = 10/40 (25%), Positives = 18/40 (45%)

Query: 58 CSVPGYDASGRVDDLAAELGKQIASIAIGSAEGFNQADNV 97
          C V G D S  +++      +Q A   I S  G +  +++
Sbjct: 44 CFVQGCDGSVLLNNTDTIESEQDALPNINSIRGLDVVNDI 83


>d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus
          anthracis [TaxId: 1392]}
          Length = 292

 Score = 25.2 bits (54), Expect = 9.5
 Identities = 10/38 (26%), Positives = 17/38 (44%)

Query: 21 IFVSAVFGEAFMLSAERELDLPHIVEHELRGNVPAVLC 58
          I V    GE+  L++E ++ L   V   +   VP +  
Sbjct: 41 IVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIAG 78


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.136    0.413 

Gapped
Lambda     K      H
   0.267   0.0596    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 980,815
Number of extensions: 44917
Number of successful extensions: 89
Number of sequences better than 10.0: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 8
Length of query: 264
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 180
Effective length of database: 1,254,276
Effective search space: 225769680
Effective search space used: 225769680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.1 bits)