BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1664
(524 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At
3.2 Angstrom Resolution
pdb|2PBH|A Chain A, Crystal Structure Of Human Procathepsin B At 3.3 Angstrom
Resolution
pdb|3PBH|A Chain A, Refined Crystal Structure Of Human Procathepsin B At 2.5
Angstrom Resolution
Length = 317
Score = 273 bits (698), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 132/255 (51%), Positives = 181/255 (70%), Gaps = 11/255 (4%)
Query: 83 RLPLLVQLSDPLEELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIAS 142
+ P V ++ L+ LP FDAR WP CPTI+EIRDQGSCGS WA GAVEA+SDR+CI +
Sbjct: 51 KPPQRVMFTEDLK-LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHT 109
Query: 143 RGKRHVRLSSDDLVSCCKD-CGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIP 201
V +S++DL++CC CG+GC GG+ +AW +W G+VSGG Y S GCRPY IP
Sbjct: 110 NAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIP 169
Query: 202 -CERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIF 260
CE ++NGS C E +TP+C + C+PGY +Y+ D ++G +YS+ +E+ IM EI+
Sbjct: 170 PCEHHVNGSRPPCT-GEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIY 228
Query: 261 RHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVA 320
++GPVEG+ ++Y+D +LYK+G+Y+HV G +G HAIRI+GWG E GT YWLVA
Sbjct: 229 KNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVE---NGT----PYWLVA 281
Query: 321 NSFNTNWGENGLFRI 335
NS+NT+WG+NG F+I
Sbjct: 282 NSWNTDWGDNGFFKI 296
Score = 182 bits (462), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 84/164 (51%), Positives = 123/164 (75%), Gaps = 9/164 (5%)
Query: 334 RIGCRPYEIP-CERYMNGSRSSCQANEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPA 392
+GCRPY IP CE ++NGSR C E +TP+C + C+PGY +Y+ D ++G +YS+
Sbjct: 160 HVGCRPYSIPPCEHHVNGSRPPCTG-EGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSN 218
Query: 393 NEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGT 452
+E+ IM EI+++GPVEG+ ++Y+D +LYK+G+Y+HV G +G HAIRI+GWG E GT
Sbjct: 219 SEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVE---NGT 275
Query: 453 SSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITAGLPK 496
YWLVANS+NT+WG+NG F+I+RGQ+ CGIE+++ AG+P+
Sbjct: 276 ----PYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPR 315
>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex
pdb|3CBK|A Chain A, Chagasin-Cathepsin B
Length = 266
Score = 271 bits (693), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 128/242 (52%), Positives = 175/242 (72%), Gaps = 10/242 (4%)
Query: 96 ELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDL 155
+LP FDAR WP CPTI+EIRDQGSCGS WA GAVEA+SDR+CI + V +S++DL
Sbjct: 6 KLPASFDAREQWPQCPTIKEIRDQGSCGSAWAFGAVEAISDRICIHTNAHVSVEVSAEDL 65
Query: 156 VSCCKD-CGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIP-CERYMNGSHSSC 213
++CC CG+GC GG+ +AW +W G+VSGG Y S GCRPY IP CE ++NG+ C
Sbjct: 66 LTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEAHVNGARPPC 125
Query: 214 QDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYA 273
E +TP+C + C+PGY +Y+ D ++G +YS+ +E+ IM EI+++GPVEG+ ++Y+
Sbjct: 126 T-GEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYS 184
Query: 274 DMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLF 333
D +LYK+G+Y+HV G +G HAIRI+GWG E GT YWLVANS+NT+WG+NG F
Sbjct: 185 DFLLYKSGVYQHVTGEMMGGHAIRILGWGVE---NGT----PYWLVANSWNTDWGDNGFF 237
Query: 334 RI 335
+I
Sbjct: 238 KI 239
Score = 181 bits (459), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 85/169 (50%), Positives = 126/169 (74%), Gaps = 11/169 (6%)
Query: 331 GLF--RIGCRPYEIP-CERYMNGSRSSCQANEPNTPECIRKCQPGYDVSYEDDLNFGRIA 387
GL+ +GCRPY IP CE ++NG+R C E +TP+C + C+PGY +Y+ D ++G +
Sbjct: 98 GLYESHVGCRPYSIPPCEAHVNGARPPCTG-EGDTPKCSKICEPGYSPTYKQDKHYGYNS 156
Query: 388 YSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEP 447
YS+ +E+ IM EI+++GPVEG+ ++Y+D +LYK+G+Y+HV G +G HAIRI+GWG E
Sbjct: 157 YSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVE- 215
Query: 448 LGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITAGLPK 496
GT YWLVANS+NT+WG+NG F+I+RGQ+ CGIE+++ AG+P+
Sbjct: 216 --NGT----PYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPR 258
>pdb|1MIR|A Chain A, Rat Procathepsin B
pdb|1MIR|B Chain B, Rat Procathepsin B
Length = 322
Score = 271 bits (693), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 130/255 (50%), Positives = 179/255 (70%), Gaps = 11/255 (4%)
Query: 83 RLPLLVQLSDPLEELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIAS 142
+LP V S+ + LPE FDAR W CPTI +IRDQGSCGS WA GAVEAMSDR+CI +
Sbjct: 50 KLPERVGFSEDIN-LPESFDAREQWSNCPTIAQIRDQGSCGSSWAFGAVEAMSDRICIHT 108
Query: 143 RGKRHVRLSSDDLVSCCK-DCGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIP 201
G+ +V +S++DL++CC CG+GC GG+ AW +W G+VSGG Y S GC PY IP
Sbjct: 109 NGRVNVEVSAEDLLTCCGIQCGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIP 168
Query: 202 -CERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIF 260
CE ++NG+ C E +TP+C + C+ GY SY++D ++G +YS+ +E+ IM EI+
Sbjct: 169 PCEHHVNGARPPCT-GEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIY 227
Query: 261 RHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVA 320
++GPVEG+ T+++D + YK+G+YKH AG +G HAIRI+GWG E + V YWLVA
Sbjct: 228 KNGPVEGAFTVFSDFLTYKSGVYKHEAGDVMGGHAIRILGWGIE-------NGVPYWLVA 280
Query: 321 NSFNTNWGENGLFRI 335
NS+N +WG+NG F+I
Sbjct: 281 NSWNADWGDNGFFKI 295
Score = 179 bits (453), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 82/164 (50%), Positives = 120/164 (73%), Gaps = 9/164 (5%)
Query: 334 RIGCRPYEIP-CERYMNGSRSSCQANEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPA 392
IGC PY IP CE ++NG+R C E +TP+C + C+ GY SY++D ++G +YS+
Sbjct: 159 HIGCLPYTIPPCEHHVNGARPPCTG-EGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSD 217
Query: 393 NEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGT 452
+E+ IM EI+++GPVEG+ T+++D + YK+G+YKH AG +G HAIRI+GWG E
Sbjct: 218 SEKEIMAEIYKNGPVEGAFTVFSDFLTYKSGVYKHEAGDVMGGHAIRILGWGIE------ 271
Query: 453 SSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITAGLPK 496
+ V YWLVANS+N +WG+NG F+I+RG+N CGIE++I AG+P+
Sbjct: 272 -NGVPYWLVANSWNADWGDNGFFKILRGENHCGIESEIVAGIPR 314
>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline
pdb|3AI8|A Chain A, Cathepsin B In Complex With The Nitroxoline
Length = 256
Score = 271 bits (693), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 129/242 (53%), Positives = 175/242 (72%), Gaps = 10/242 (4%)
Query: 96 ELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDL 155
+LP FDAR WP CPTI+EIRDQGSCGS WA GAVEA+SDR+CI + V +S++DL
Sbjct: 2 KLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDL 61
Query: 156 VSCCKD-CGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIP-CERYMNGSHSSC 213
++CC CG+GC GG+ +AW +W G+VSGG Y S GCRPY IP CE ++NGS C
Sbjct: 62 LTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPC 121
Query: 214 QDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYA 273
E +TP+C + C+PGY +Y+ D ++G +YS+ +E+ IM EI+++GPVEG+ ++Y+
Sbjct: 122 T-GEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYS 180
Query: 274 DMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLF 333
D +LYK+G+Y+HV G +G HAIRI+GWG E GT YWLVANS+NT+WG+NG F
Sbjct: 181 DFLLYKSGVYQHVTGEMMGGHAIRILGWGVE---NGT----PYWLVANSWNTDWGDNGFF 233
Query: 334 RI 335
+I
Sbjct: 234 KI 235
Score = 182 bits (463), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 86/169 (50%), Positives = 126/169 (74%), Gaps = 11/169 (6%)
Query: 331 GLF--RIGCRPYEIP-CERYMNGSRSSCQANEPNTPECIRKCQPGYDVSYEDDLNFGRIA 387
GL+ +GCRPY IP CE ++NGSR C E +TP+C + C+PGY +Y+ D ++G +
Sbjct: 94 GLYESHVGCRPYSIPPCEHHVNGSRPPCTG-EGDTPKCSKICEPGYSPTYKQDKHYGYNS 152
Query: 388 YSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEP 447
YS+ +E+ IM EI+++GPVEG+ ++Y+D +LYK+G+Y+HV G +G HAIRI+GWG E
Sbjct: 153 YSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVE- 211
Query: 448 LGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITAGLPK 496
GT YWLVANS+NT+WG+NG F+I+RGQ+ CGIE+++ AG+P+
Sbjct: 212 --NGT----PYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPR 254
>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|B Chain B, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|C Chain C, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
Length = 261
Score = 271 bits (692), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 129/242 (53%), Positives = 175/242 (72%), Gaps = 10/242 (4%)
Query: 96 ELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDL 155
+LP FDAR WP CPTI+EIRDQGSCGS WA GAVEA+SDR+CI + V +S++DL
Sbjct: 1 KLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDL 60
Query: 156 VSCCKD-CGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIP-CERYMNGSHSSC 213
++CC CG+GC GG+ +AW +W G+VSGG Y S GCRPY IP CE ++NGS C
Sbjct: 61 LTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPC 120
Query: 214 QDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYA 273
E +TP+C + C+PGY +Y+ D ++G +YS+ +E+ IM EI+++GPVEG+ ++Y+
Sbjct: 121 T-GEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYS 179
Query: 274 DMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLF 333
D +LYK+G+Y+HV G +G HAIRI+GWG E GT YWLVANS+NT+WG+NG F
Sbjct: 180 DFLLYKSGVYQHVTGEMMGGHAIRILGWGVE---NGT----PYWLVANSWNTDWGDNGFF 232
Query: 334 RI 335
+I
Sbjct: 233 KI 234
Score = 182 bits (462), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 86/169 (50%), Positives = 126/169 (74%), Gaps = 11/169 (6%)
Query: 331 GLF--RIGCRPYEIP-CERYMNGSRSSCQANEPNTPECIRKCQPGYDVSYEDDLNFGRIA 387
GL+ +GCRPY IP CE ++NGSR C E +TP+C + C+PGY +Y+ D ++G +
Sbjct: 93 GLYESHVGCRPYSIPPCEHHVNGSRPPCTG-EGDTPKCSKICEPGYSPTYKQDKHYGYNS 151
Query: 388 YSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEP 447
YS+ +E+ IM EI+++GPVEG+ ++Y+D +LYK+G+Y+HV G +G HAIRI+GWG E
Sbjct: 152 YSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVE- 210
Query: 448 LGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITAGLPK 496
GT YWLVANS+NT+WG+NG F+I+RGQ+ CGIE+++ AG+P+
Sbjct: 211 --NGT----PYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPR 253
>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A
pdb|3K9M|B Chain B, Cathepsin B In Complex With Stefin A
Length = 254
Score = 270 bits (691), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 129/241 (53%), Positives = 174/241 (72%), Gaps = 10/241 (4%)
Query: 97 LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLV 156
LP FDAR WP CPTI+EIRDQGSCGS WA GAVEA+SDR+CI + V +S++DL+
Sbjct: 1 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 60
Query: 157 SCCKD-CGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIP-CERYMNGSHSSCQ 214
+CC CG+GC GG+ +AW +W G+VSGG Y S GCRPY IP CE ++NGS C
Sbjct: 61 TCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCT 120
Query: 215 DNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYAD 274
E +TP+C + C+PGY +Y+ D ++G +YS+ +E+ IM EI+++GPVEG+ ++Y+D
Sbjct: 121 -GEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSD 179
Query: 275 MILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFR 334
+LYK+G+Y+HV G +G HAIRI+GWG E GT YWLVANS+NT+WG+NG F+
Sbjct: 180 FLLYKSGVYQHVTGEMMGGHAIRILGWGVE---NGT----PYWLVANSWNTDWGDNGFFK 232
Query: 335 I 335
I
Sbjct: 233 I 233
Score = 182 bits (462), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 86/169 (50%), Positives = 126/169 (74%), Gaps = 11/169 (6%)
Query: 331 GLF--RIGCRPYEIP-CERYMNGSRSSCQANEPNTPECIRKCQPGYDVSYEDDLNFGRIA 387
GL+ +GCRPY IP CE ++NGSR C E +TP+C + C+PGY +Y+ D ++G +
Sbjct: 92 GLYESHVGCRPYSIPPCEHHVNGSRPPCTG-EGDTPKCSKICEPGYSPTYKQDKHYGYNS 150
Query: 388 YSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEP 447
YS+ +E+ IM EI+++GPVEG+ ++Y+D +LYK+G+Y+HV G +G HAIRI+GWG E
Sbjct: 151 YSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVE- 209
Query: 448 LGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITAGLPK 496
GT YWLVANS+NT+WG+NG F+I+RGQ+ CGIE+++ AG+P+
Sbjct: 210 --NGT----PYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPR 252
>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CPJ|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1THE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
pdb|1THE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
Length = 260
Score = 267 bits (682), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 126/241 (52%), Positives = 172/241 (71%), Gaps = 10/241 (4%)
Query: 97 LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLV 156
LPE FDAR W CPTI +IRDQGSCGS WA GAVEAMSDR+CI + G+ +V +S++DL+
Sbjct: 7 LPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLL 66
Query: 157 SCCK-DCGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIP-CERYMNGSHSSCQ 214
+CC CG+GC GG+ AW +W G+VSGG Y S GC PY IP CE ++NG+ C
Sbjct: 67 TCCGIQCGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGARPPCT 126
Query: 215 DNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYAD 274
E +TP+C + C+ GY SY++D ++G +YS+ +E+ IM EI+++GPVEG+ T+++D
Sbjct: 127 -GEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFSD 185
Query: 275 MILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFR 334
+ YK+G+YKH AG +G HAIRI+GWG E + V YWLVANS+N +WG+NG F+
Sbjct: 186 FLTYKSGVYKHEAGDVMGGHAIRILGWGIE-------NGVPYWLVANSWNADWGDNGFFK 238
Query: 335 I 335
I
Sbjct: 239 I 239
Score = 179 bits (453), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 82/164 (50%), Positives = 120/164 (73%), Gaps = 9/164 (5%)
Query: 334 RIGCRPYEIP-CERYMNGSRSSCQANEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPA 392
IGC PY IP CE ++NG+R C E +TP+C + C+ GY SY++D ++G +YS+
Sbjct: 103 HIGCLPYTIPPCEHHVNGARPPCTG-EGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSD 161
Query: 393 NEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGT 452
+E+ IM EI+++GPVEG+ T+++D + YK+G+YKH AG +G HAIRI+GWG E
Sbjct: 162 SEKEIMAEIYKNGPVEGAFTVFSDFLTYKSGVYKHEAGDVMGGHAIRILGWGIE------ 215
Query: 453 SSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITAGLPK 496
+ V YWLVANS+N +WG+NG F+I+RG+N CGIE++I AG+P+
Sbjct: 216 -NGVPYWLVANSWNADWGDNGFFKILRGENHCGIESEIVAGIPR 258
>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CTE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
Length = 254
Score = 266 bits (680), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 126/241 (52%), Positives = 172/241 (71%), Gaps = 10/241 (4%)
Query: 97 LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLV 156
LPE FDAR W CPTI +IRDQGSCGS WA GAVEAMSDR+CI + G+ +V +S++DL+
Sbjct: 1 LPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLL 60
Query: 157 SCCK-DCGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIP-CERYMNGSHSSCQ 214
+CC CG+GC GG+ AW +W G+VSGG Y S GC PY IP CE ++NG+ C
Sbjct: 61 TCCGIQCGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGARPPCT 120
Query: 215 DNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYAD 274
E +TP+C + C+ GY SY++D ++G +YS+ +E+ IM EI+++GPVEG+ T+++D
Sbjct: 121 -GEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFSD 179
Query: 275 MILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFR 334
+ YK+G+YKH AG +G HAIRI+GWG E + V YWLVANS+N +WG+NG F+
Sbjct: 180 FLTYKSGVYKHEAGDVMGGHAIRILGWGIE-------NGVPYWLVANSWNADWGDNGFFK 232
Query: 335 I 335
I
Sbjct: 233 I 233
Score = 178 bits (452), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 82/164 (50%), Positives = 120/164 (73%), Gaps = 9/164 (5%)
Query: 334 RIGCRPYEIP-CERYMNGSRSSCQANEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPA 392
IGC PY IP CE ++NG+R C E +TP+C + C+ GY SY++D ++G +YS+
Sbjct: 97 HIGCLPYTIPPCEHHVNGARPPCTG-EGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSD 155
Query: 393 NEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGT 452
+E+ IM EI+++GPVEG+ T+++D + YK+G+YKH AG +G HAIRI+GWG E
Sbjct: 156 SEKEIMAEIYKNGPVEGAFTVFSDFLTYKSGVYKHEAGDVMGGHAIRILGWGIE------ 209
Query: 453 SSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITAGLPK 496
+ V YWLVANS+N +WG+NG F+I+RG+N CGIE++I AG+P+
Sbjct: 210 -NGVPYWLVANSWNADWGDNGFFKILRGENHCGIESEIVAGIPR 252
>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B-
E64c Complex
pdb|2DC6|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca073 Complex
pdb|2DC7|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca042 Complex
pdb|2DC8|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca059 Complex
pdb|2DC9|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca074me Complex
pdb|2DCA|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca075 Complex
pdb|2DCB|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca076 Complex
pdb|2DCC|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca077 Complex
pdb|2DCD|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca078 Complex
Length = 256
Score = 254 bits (648), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 129/241 (53%), Positives = 172/241 (71%), Gaps = 10/241 (4%)
Query: 97 LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLV 156
LPE FDAR WP CPTI+EIRDQGSCGS WA GAVEA+SDR+CI S G+ +V +S++D++
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDML 60
Query: 157 SCCKDCGNGCQGG-FHGKAWKYWVTTGIVSGGTYASKQGCRPYEIP-CERYMNGSHSSCQ 214
+CC G F AW +W G+VSGG Y S GCRPY IP CE ++NGS C
Sbjct: 61 TCCGGECGDGCNGGFPSGAWNFWTKKGLVSGGLYNSHVGCRPYSIPPCEHHVNGSRPPCT 120
Query: 215 DNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYAD 274
E +TP+C + C+PGY SY++D +FG +YS+ NE+ IM EI+++GPVEG+ ++Y+D
Sbjct: 121 -GEGDTPKCSKTCEPGYSPSYKEDKHFGCSSYSVANNEKEIMAEIYKNGPVEGAFSVYSD 179
Query: 275 MILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFR 334
+LYK+G+Y+HV+G +G HAIRI+GWG E GT YWLV NS+NT+WG+NG F+
Sbjct: 180 FLLYKSGVYQHVSGEIMGGHAIRILGWGVE---NGT----PYWLVGNSWNTDWGDNGFFK 232
Query: 335 I 335
I
Sbjct: 233 I 233
Score = 186 bits (472), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 87/163 (53%), Positives = 123/163 (75%), Gaps = 9/163 (5%)
Query: 334 RIGCRPYEIP-CERYMNGSRSSCQANEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPA 392
+GCRPY IP CE ++NGSR C E +TP+C + C+PGY SY++D +FG +YS+
Sbjct: 97 HVGCRPYSIPPCEHHVNGSRPPCTG-EGDTPKCSKTCEPGYSPSYKEDKHFGCSSYSVAN 155
Query: 393 NEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGT 452
NE+ IM EI+++GPVEG+ ++Y+D +LYK+G+Y+HV+G +G HAIRI+GWG E GT
Sbjct: 156 NEKEIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVSGEIMGGHAIRILGWGVE---NGT 212
Query: 453 SSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITAGLP 495
YWLV NS+NT+WG+NG F+I+RGQ+ CGIE++I AG+P
Sbjct: 213 ----PYWLVGNSWNTDWGDNGFFKILRGQDHCGIESEIVAGMP 251
>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074
Complex
Length = 253
Score = 253 bits (646), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 129/241 (53%), Positives = 172/241 (71%), Gaps = 10/241 (4%)
Query: 97 LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLV 156
LPE FDAR WP CPTI+EIRDQGSCGS WA GAVEA+SDR+CI S G+ +V +S++D++
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDML 60
Query: 157 SCCKDCGNGCQGGFH-GKAWKYWVTTGIVSGGTYASKQGCRPYEIP-CERYMNGSHSSCQ 214
+CC G AW +W G+VSGG Y S GCRPY IP CE ++NGS C
Sbjct: 61 TCCGGECGDGCNGGEPSGAWNFWTKKGLVSGGLYNSHVGCRPYSIPPCEHHVNGSRPPCT 120
Query: 215 DNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYAD 274
E +TP+C + C+PGY SY++D +FG +YS+ NE+ IM EI+++GPVEG+ ++Y+D
Sbjct: 121 -GEGDTPKCSKTCEPGYSPSYKEDKHFGCSSYSVANNEKEIMAEIYKNGPVEGAFSVYSD 179
Query: 275 MILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFR 334
+LYK+G+Y+HV+G +G HAIRI+GWG E GT YWLVANS+NT+WG+NG F+
Sbjct: 180 FLLYKSGVYQHVSGEIMGGHAIRILGWGVE---NGT----PYWLVANSWNTDWGDNGFFK 232
Query: 335 I 335
I
Sbjct: 233 I 233
Score = 187 bits (476), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 90/168 (53%), Positives = 127/168 (75%), Gaps = 11/168 (6%)
Query: 331 GLF--RIGCRPYEIP-CERYMNGSRSSCQANEPNTPECIRKCQPGYDVSYEDDLNFGRIA 387
GL+ +GCRPY IP CE ++NGSR C E +TP+C + C+PGY SY++D +FG +
Sbjct: 92 GLYNSHVGCRPYSIPPCEHHVNGSRPPCTG-EGDTPKCSKTCEPGYSPSYKEDKHFGCSS 150
Query: 388 YSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEP 447
YS+ NE+ IM EI+++GPVEG+ ++Y+D +LYK+G+Y+HV+G +G HAIRI+GWG E
Sbjct: 151 YSVANNEKEIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVSGEIMGGHAIRILGWGVE- 209
Query: 448 LGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITAGLP 495
GT YWLVANS+NT+WG+NG F+I+RGQ+ CGIE++I AG+P
Sbjct: 210 --NGT----PYWLVANSWNTDWGDNGFFKILRGQDHCGIESEIVAGMP 251
>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With Ca074 Inhibitor
pdb|3S3Q|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11017 Inhibitor
pdb|3S3R|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|B Chain B, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|C Chain C, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
Length = 254
Score = 252 bits (644), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 121/241 (50%), Positives = 154/241 (63%), Gaps = 8/241 (3%)
Query: 96 ELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDL 155
E+P FD+R WP C +I IRDQ CGS WA GAVEAMSDR CI S GK++V LS+ DL
Sbjct: 2 EIPSSFDSRKKWPRCKSIATIRDQSRCGSCWAFGAVEAMSDRSCIQSGGKQNVELSAVDL 61
Query: 156 VSCCKDCGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIP-CERYMNGSHSSCQ 214
+SCC+ CG GC+GG G AW YWV GIV+G + + GC PY P CE + G + C
Sbjct: 62 LSCCESCGLGCEGGILGPAWDYWVKEGIVTGSSKENHAGCEPYPFPKCEHHTKGKYPPCG 121
Query: 215 DNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYAD 274
TP C + CQ Y Y D + G+ +Y++ +E+ I +EI ++GPVE T+Y D
Sbjct: 122 SKIYKTPRCKQTCQKKYKTPYTQDKHRGKSSYNVKNDEKAIQKEIMKYGPVEAGFTVYED 181
Query: 275 MILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFR 334
+ YK+GIYKH+ G LG HAIRIIGWG E + YWL+ANS+N +WGENG FR
Sbjct: 182 FLNYKSGIYKHITGETLGGHAIRIIGWGVE-------NKAPYWLIANSWNEDWGENGYFR 234
Query: 335 I 335
I
Sbjct: 235 I 235
Score = 158 bits (400), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 79/179 (44%), Positives = 107/179 (59%), Gaps = 11/179 (6%)
Query: 316 YWLVANSFNTNWGENGLFRIGCRPYEIP-CERYMNGSRSSCQANEPNTPECIRKCQPGYD 374
YW+ + EN GC PY P CE + G C + TP C + CQ Y
Sbjct: 83 YWVKEGIVTGSSKEN---HAGCEPYPFPKCEHHTKGKYPPCGSKIYKTPRCKQTCQKKYK 139
Query: 375 VSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLG 434
Y D + G+ +Y++ +E+ I +EI ++GPVE T+Y D + YK+GIYKH+ G LG
Sbjct: 140 TPYTQDKHRGKSSYNVKNDEKAIQKEIMKYGPVEAGFTVYEDFLNYKSGIYKHITGETLG 199
Query: 435 EHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITAG 493
HAIRIIGWG E + YWL+ANS+N +WGENG FRIVRG++EC IE+++TAG
Sbjct: 200 GHAIRIIGWGVE-------NKAPYWLIANSWNEDWGENGYFRIVRGRDECSIESEVTAG 251
>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|D Chain D, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|B Chain B, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|E Chain E, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|B Chain B, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 205
Score = 199 bits (506), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 95/190 (50%), Positives = 136/190 (71%), Gaps = 10/190 (5%)
Query: 148 VRLSSDDLVSCCKD-CGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIP-CERY 205
V +S++DL++CC CG+GC GG+ +AW +W G+VSGG Y S GCRPY IP CE +
Sbjct: 3 VEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHH 62
Query: 206 MNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPV 265
+NGS C E +TP+C + C+PGY +Y+ D ++G +YS+ +E+ IM EI+++GPV
Sbjct: 63 VNGSRPPCT-GEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPV 121
Query: 266 EGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNT 325
EG+ ++Y+D +LYK+G+Y+HV G +G HAIRI+GWG E GT YWLVANS+NT
Sbjct: 122 EGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVE---NGT----PYWLVANSWNT 174
Query: 326 NWGENGLFRI 335
+WG+NG F+I
Sbjct: 175 DWGDNGFFKI 184
Score = 182 bits (463), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 84/164 (51%), Positives = 123/164 (75%), Gaps = 9/164 (5%)
Query: 334 RIGCRPYEIP-CERYMNGSRSSCQANEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPA 392
+GCRPY IP CE ++NGSR C E +TP+C + C+PGY +Y+ D ++G +YS+
Sbjct: 48 HVGCRPYSIPPCEHHVNGSRPPCTG-EGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSN 106
Query: 393 NEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGT 452
+E+ IM EI+++GPVEG+ ++Y+D +LYK+G+Y+HV G +G HAIRI+GWG E GT
Sbjct: 107 SEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVE---NGT 163
Query: 453 SSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITAGLPK 496
YWLVANS+NT+WG+NG F+I+RGQ+ CGIE+++ AG+P+
Sbjct: 164 ----PYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPR 203
>pdb|1SP4|B Chain B, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 205
Score = 186 bits (472), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 87/163 (53%), Positives = 123/163 (75%), Gaps = 9/163 (5%)
Query: 334 RIGCRPYEIP-CERYMNGSRSSCQANEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPA 392
+GCRPY IP CE ++NGSR C E +TP+C + C+PGY SY++D +FG +YS+
Sbjct: 49 HVGCRPYSIPPCEHHVNGSRPPCTG-EGDTPKCNKTCEPGYSPSYKEDKHFGCSSYSVAN 107
Query: 393 NEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGT 452
NE+ IM EI+++GPVEG+ ++Y+D +LYK+G+Y+HV+G +G HAIRI+GWG E GT
Sbjct: 108 NEKEIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVSGEIMGGHAIRILGWGVE---NGT 164
Query: 453 SSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITAGLP 495
YWLV NS+NT+WG+NG F+I+RGQ+ CGIE++I AG+P
Sbjct: 165 ----PYWLVGNSWNTDWGDNGFFKILRGQDHCGIESEIVAGMP 203
Score = 178 bits (451), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 86/167 (51%), Positives = 118/167 (70%), Gaps = 9/167 (5%)
Query: 170 FHGKAWKYWVTTGIVSGGTYASKQGCRPYEIP-CERYMNGSHSSCQDNEPNTPECIRKCQ 228
F AW +W G+VSGG Y S GCRPY IP CE ++NGS C E +TP+C + C+
Sbjct: 27 FPSGAWNFWTKKGLVSGGLYNSHVGCRPYSIPPCEHHVNGSRPPCT-GEGDTPKCNKTCE 85
Query: 229 PGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAG 288
PGY SY++D +FG +YS+ NE+ IM EI+++GPVEG+ ++Y+D +LYK+G+Y+HV+G
Sbjct: 86 PGYSPSYKEDKHFGCSSYSVANNEKEIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVSG 145
Query: 289 GPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
+G HAIRI+GWG E GT YWLV NS+NT+WG+NG F+I
Sbjct: 146 EIMGGHAIRILGWGVE---NGT----PYWLVGNSWNTDWGDNGFFKI 185
>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
pdb|3HHI|B Chain B, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
Length = 325
Score = 185 bits (469), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 116/311 (37%), Positives = 159/311 (51%), Gaps = 34/311 (10%)
Query: 33 LSKAFDRVDHSILLPKLPFYGAEKNALSKLTLSELEMRMGV----HPDSKLPQNRLPLLV 88
LSKAF VD L + + + +TL E + GV + S LP+ R
Sbjct: 10 LSKAF--VDRVNRLNRGIWKAKYDGVMQNITLREAKRLNGVIKKNNNASILPKRRF---- 63
Query: 89 QLSDPLEELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHV 148
+ LP FD+ WP CPTI +I DQ +CGS WA+ A AMSDR C G + V
Sbjct: 64 TEEEARAPLPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMG-GVQDV 122
Query: 149 RLSSDDLVSCCKDCGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIP-CERYMN 207
+S+ DL++CC DCG+GC GG +AW Y+ +TG+VS C+PY P C +
Sbjct: 123 HISAGDLLACCSDCGDGCNGGDPDRAWAYFSSTGLVS-------DYCQPYPFPHCSHHSK 175
Query: 208 GS--HSSCQDNEPNTPECIRKCQ-PGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGP 264
+ C +TP+C C P V +N+ E+ MRE+F GP
Sbjct: 176 SKNGYPPCSQFNFDTPKCDYTCDDPTIPV-----VNYRSWTSYALQGEDDYMRELFFRGP 230
Query: 265 VEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFN 324
E + +Y D I Y +G+Y HV+G LG HA+R++GW GTS+ V YW +ANS+N
Sbjct: 231 FEVAFDVYEDFIAYNSGVYHHVSGQYLGGHAVRLVGW-------GTSNGVPYWKIANSWN 283
Query: 325 TNWGENGLFRI 335
T WG +G F I
Sbjct: 284 TEWGMDGYFLI 294
Score = 112 bits (281), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 91/169 (53%), Gaps = 16/169 (9%)
Query: 331 GLFRIGCRPYEIPCERYMNGSRSS---CQANEPNTPECIRKCQ-PGYDVSYEDDLNFGRI 386
GL C+PY P + + S++ C +TP+C C P V +N+
Sbjct: 156 GLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTPKCDYTCDDPTIPV-----VNYRSW 210
Query: 387 AYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQE 446
E+ MRE+F GP E + +Y D I Y +G+Y HV+G LG HA+R++GW
Sbjct: 211 TSYALQGEDDYMRELFFRGPFEVAFDVYEDFIAYNSGVYHHVSGQYLGGHAVRLVGW--- 267
Query: 447 PLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITAGLP 495
GTS+ V YW +ANS+NT WG +G F I RG +ECGIE +AG+P
Sbjct: 268 ----GTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSECGIEDGGSAGIP 312
>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
pdb|3MOR|B Chain B, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
Length = 317
Score = 184 bits (468), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 116/311 (37%), Positives = 159/311 (51%), Gaps = 34/311 (10%)
Query: 33 LSKAFDRVDHSILLPKLPFYGAEKNALSKLTLSELEMRMGV----HPDSKLPQNRLPLLV 88
LSKAF VD L + + + +TL E + GV + S LP+ R
Sbjct: 9 LSKAF--VDRVNRLNRGIWKAKYDGVMQNITLREAKRLNGVIKKNNNASILPKRRF---- 62
Query: 89 QLSDPLEELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHV 148
+ LP FD+ WP CPTI +I DQ +CGS WA+ A AMSDR C G + V
Sbjct: 63 TEEEARAPLPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMG-GVQDV 121
Query: 149 RLSSDDLVSCCKDCGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIP-CERYMN 207
+S+ DL++CC DCG+GC GG +AW Y+ +TG+VS C+PY P C +
Sbjct: 122 HISAGDLLACCSDCGDGCNGGDPDRAWAYFSSTGLVS-------DYCQPYPFPHCSHHSK 174
Query: 208 GS--HSSCQDNEPNTPECIRKCQ-PGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGP 264
+ C +TP+C C P V +N+ E+ MRE+F GP
Sbjct: 175 SKNGYPPCSQFNFDTPKCNYTCDDPTIPV-----VNYRSWTSYALQGEDDYMRELFFRGP 229
Query: 265 VEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFN 324
E + +Y D I Y +G+Y HV+G LG HA+R++GW GTS+ V YW +ANS+N
Sbjct: 230 FEVAFDVYEDFIAYNSGVYHHVSGQYLGGHAVRLVGW-------GTSNGVPYWKIANSWN 282
Query: 325 TNWGENGLFRI 335
T WG +G F I
Sbjct: 283 TEWGMDGYFLI 293
Score = 112 bits (280), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 91/169 (53%), Gaps = 16/169 (9%)
Query: 331 GLFRIGCRPYEIPCERYMNGSRSS---CQANEPNTPECIRKCQ-PGYDVSYEDDLNFGRI 386
GL C+PY P + + S++ C +TP+C C P V +N+
Sbjct: 155 GLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTPKCNYTCDDPTIPV-----VNYRSW 209
Query: 387 AYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQE 446
E+ MRE+F GP E + +Y D I Y +G+Y HV+G LG HA+R++GW
Sbjct: 210 TSYALQGEDDYMRELFFRGPFEVAFDVYEDFIAYNSGVYHHVSGQYLGGHAVRLVGW--- 266
Query: 447 PLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITAGLP 495
GTS+ V YW +ANS+NT WG +G F I RG +ECGIE +AG+P
Sbjct: 267 ----GTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSECGIEDGGSAGIP 311
>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs
Free-electron Laser Pulse Data By Serial Femtosecond
X-ray Crystallography
Length = 340
Score = 184 bits (467), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 116/311 (37%), Positives = 159/311 (51%), Gaps = 34/311 (10%)
Query: 33 LSKAFDRVDHSILLPKLPFYGAEKNALSKLTLSELEMRMGV----HPDSKLPQNRLPLLV 88
LSKAF VD L + + + +TL E + GV + S LP+ R
Sbjct: 32 LSKAF--VDRVNRLNRGIWKAKYDGVMQNITLREAKRLNGVIKKNNNASILPKRRF---- 85
Query: 89 QLSDPLEELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHV 148
+ LP FD+ WP CPTI +I DQ +CGS WA+ A AMSDR C G + V
Sbjct: 86 TEEEARAPLPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMG-GVQDV 144
Query: 149 RLSSDDLVSCCKDCGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIP-CERYMN 207
+S+ DL++CC DCG+GC GG +AW Y+ +TG+VS C+PY P C +
Sbjct: 145 HISAGDLLACCSDCGDGCNGGDPDRAWAYFSSTGLVS-------DYCQPYPFPHCSHHSK 197
Query: 208 GS--HSSCQDNEPNTPECIRKCQ-PGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGP 264
+ C +TP+C C P V +N+ E+ MRE+F GP
Sbjct: 198 SKNGYPPCSQFNFDTPKCNYTCDDPTIPV-----VNYRSWTSYALQGEDDYMRELFFRGP 252
Query: 265 VEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFN 324
E + +Y D I Y +G+Y HV+G LG HA+R++GW GTS+ V YW +ANS+N
Sbjct: 253 FEVAFDVYEDFIAYNSGVYHHVSGQYLGGHAVRLVGW-------GTSNGVPYWKIANSWN 305
Query: 325 TNWGENGLFRI 335
T WG +G F I
Sbjct: 306 TEWGMDGYFLI 316
Score = 112 bits (279), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 91/169 (53%), Gaps = 16/169 (9%)
Query: 331 GLFRIGCRPYEIPCERYMNGSRSS---CQANEPNTPECIRKCQ-PGYDVSYEDDLNFGRI 386
GL C+PY P + + S++ C +TP+C C P V +N+
Sbjct: 178 GLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTPKCNYTCDDPTIPV-----VNYRSW 232
Query: 387 AYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQE 446
E+ MRE+F GP E + +Y D I Y +G+Y HV+G LG HA+R++GW
Sbjct: 233 TSYALQGEDDYMRELFFRGPFEVAFDVYEDFIAYNSGVYHHVSGQYLGGHAVRLVGW--- 289
Query: 447 PLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITAGLP 495
GTS+ V YW +ANS+NT WG +G F I RG +ECGIE +AG+P
Sbjct: 290 ----GTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSECGIEDGGSAGIP 334
>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin
C
Length = 441
Score = 102 bits (255), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 84/286 (29%), Positives = 135/286 (47%), Gaps = 52/286 (18%)
Query: 62 LTLSELEMRMGVHPDSKLPQNR-LPLLVQLSDPLEELPEGFDAR----INWPYCPTIQEI 116
LTL ++ R G H K+P+ + PL ++ + LP +D R IN+ + +
Sbjct: 172 LTLGDMIRRSGGH-SRKIPRPKPAPLTAEIQQKILFLPTSWDWRNVHGINF-----VSPV 225
Query: 117 RDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGF-HGKAW 175
R+Q SCGS ++ ++ + R+ I + + LS ++VSC + GC+GGF + A
Sbjct: 226 RNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVSCSQ-YAQGCEGGFPYLIAG 284
Query: 176 KYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSY 235
KY G+V ++ C PY G+ S C+ E +C R Y
Sbjct: 285 KYAQDFGLV-------EEACFPY--------TGTDSPCKMKE----DCFRY--------Y 317
Query: 236 EDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVA------GG 289
+ ++ Y NE + E+ HGP+ + +Y D + YK GIY H
Sbjct: 318 SSEYHYVGGFYG-GCNEALMKLELVHHGPMAVAFEVYDDFLHYKKGIYHHTGLRDPFNPF 376
Query: 290 PLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
L HA+ ++G+G + ++S + YW+V NS+ T WGENG FRI
Sbjct: 377 ELTNHAVLLVGYGTD-----SASGMDYWIVKNSWGTGWGENGYFRI 417
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 88/190 (46%), Gaps = 35/190 (18%)
Query: 317 WLVANSFNTNWGENGLFRIGCRPYEIPCERYMNGSRSSCQANEPNTPECIRKCQPGYDVS 376
+L+A + ++G L C PY G+ S C+ E +C R
Sbjct: 280 YLIAGKYAQDFG---LVEEACFPY--------TGTDSPCKMKE----DCFRY-------- 316
Query: 377 YEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVA------G 430
Y + ++ Y NE + E+ HGP+ + +Y D + YK GIY H
Sbjct: 317 YSSEYHYVGGFYG-GCNEALMKLELVHHGPMAVAFEVYDDFLHYKKGIYHHTGLRDPFNP 375
Query: 431 GPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADI 490
L HA+ ++G+G + ++S + YW+V NS+ T WGENG FRI RG +EC IE+
Sbjct: 376 FELTNHAVLLVGYGTD-----SASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIA 430
Query: 491 TAGLPKIGLE 500
A P LE
Sbjct: 431 VAATPIPKLE 440
>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric
Cysteine Protease Of The Papain Family
Length = 438
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/286 (26%), Positives = 130/286 (45%), Gaps = 51/286 (17%)
Query: 61 KLTLSELEMRMGVHPDSKLPQNRLPLLVQLSDPLEELPEGFDAR----INWPYCPTIQEI 116
KL++ +L R G H L P+ ++ + LPE +D R IN+ + +
Sbjct: 171 KLSIRDLIRRSG-HSGRILRPKPAPITDEIQQQILSLPESWDWRNVRGINF-----VSPV 224
Query: 117 RDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGF-HGKAW 175
R+Q SCGS ++ ++ + R+ I + + LS ++VSC GC GGF + A
Sbjct: 225 RNQESCGSCYSFASLGMLEARIRILTNNSQTPILSPQEVVSC-SPYAQGCDGGFPYLIAG 283
Query: 176 KYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSY 235
KY G+V ++ C PY + + C+ E C+R Y
Sbjct: 284 KYAQDFGVV-------EENCFPY--------TATDAPCKPKE----NCLR---------Y 315
Query: 236 EDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGG------ 289
+ + NE + E+ +HGP+ + ++ D + Y +GIY H
Sbjct: 316 YSSEYYYVGGFYGGCNEALMKLELVKHGPMAVAFEVHDDFLHYHSGIYHHTGLSDPFNPF 375
Query: 290 PLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
L HA+ ++G+G++P+ + + YW+V NS+ + WGE+G FRI
Sbjct: 376 ELTNHAVLLVGYGKDPV-----TGLDYWIVKNSWGSQWGESGYFRI 416
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 63/109 (57%), Gaps = 11/109 (10%)
Query: 393 NEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGG------PLGEHAIRIIGWGQE 446
NE + E+ +HGP+ + ++ D + Y +GIY H L HA+ ++G+G++
Sbjct: 331 NEALMKLELVKHGPMAVAFEVHDDFLHYHSGIYHHTGLSDPFNPFELTNHAVLLVGYGKD 390
Query: 447 PLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITAGLP 495
P+ + + YW+V NS+ + WGE+G FRI RG +EC IE+ A +P
Sbjct: 391 PV-----TGLDYWIVKNSWGSQWGESGYFRIRRGTDECAIESIAMAAIP 434
>pdb|1SP4|A Chain A, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 48
Score = 82.0 bits (201), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 37/48 (77%), Positives = 40/48 (83%)
Query: 97 LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRG 144
LPE FDAR WP CPTI+EIRDQGSCGS WA GAVEA+SDR+CI S G
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNG 48
>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1
Angstrom Resolution: Location Of The Mini-Chain
C-Terminal Carboxyl Group Defines Cathepsin H
Aminopeptidase Function
pdb|1NB3|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB5|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H
Length = 220
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 105/246 (42%), Gaps = 56/246 (22%)
Query: 113 IQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN-GCQGGFH 171
+ +++QGSCGS W A+ V IA+ + + L+ LV C ++ N GCQGG
Sbjct: 14 VSPVKNQGSCGSCWTFSTTGALESAVAIAT--GKMLSLAEQQLVDCAQNFNNHGCQGGLP 71
Query: 172 GKAWKYW-VTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPG 230
+A++Y GI+ TY PY+ G C K QP
Sbjct: 72 SQAFEYIRYNKGIMGEDTY-------PYK--------GQDDHC------------KFQPD 104
Query: 231 YDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGP 290
+++ D +A +EE ++ + + PV + + D ++Y+ GIY +
Sbjct: 105 KAIAFVKD-----VANITMNDEEAMVEAVALYNPVSFAFEVTNDFLMYRKGIYSSTSCHK 159
Query: 291 LGE---HAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI----------GC 337
+ HA+ +G+G+E + + YW+V NS+ WG NG F I C
Sbjct: 160 TPDKVNHAVLAVGYGEE-------NGIPYWIVKNSWGPQWGMNGYFLIERGKNMCGLAAC 212
Query: 338 RPYEIP 343
Y IP
Sbjct: 213 ASYPIP 218
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 66/133 (49%), Gaps = 15/133 (11%)
Query: 368 KCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKH 427
K QP +++ D +A +EE ++ + + PV + + D ++Y+ GIY
Sbjct: 100 KFQPDKAIAFVKD-----VANITMNDEEAMVEAVALYNPVSFAFEVTNDFLMYRKGIYSS 154
Query: 428 VAGGPLGE---HAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNEC 484
+ + HA+ +G+G+E + + YW+V NS+ WG NG F I RG+N C
Sbjct: 155 TSCHKTPDKVNHAVLAVGYGEE-------NGIPYWIVKNSWGPQWGMNGYFLIERGKNMC 207
Query: 485 GIEADITAGLPKI 497
G+ A + +P +
Sbjct: 208 GLAACASYPIPLV 220
>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola
Hepatica
Length = 310
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/295 (23%), Positives = 117/295 (39%), Gaps = 58/295 (19%)
Query: 55 EKNALSKLTLSELEMRMGVHPDSKLPQNRLPLLVQLSDPLEELPEG--FDA-------RI 105
E N L L + + D + + L ++S + L G ++A +I
Sbjct: 37 EHNLRHDLGLVTYTLGLNQFTDMTFEEFKAKYLTEMSRASDILSHGVPYEANNRAVPDKI 96
Query: 106 NWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCG-N 164
+W + E++DQG+CGSGWA M + R + S LV C + G N
Sbjct: 97 DWRESGYVTEVKDQGNCGSGWAFSTTGTMEGQYMKNERTS--ISFSEQQLVDCSRPWGNN 154
Query: 165 GCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECI 224
GC GG A++Y G+ + +Y PY C+
Sbjct: 155 GCGGGLMENAYQYLKQFGLETESSY-------PY--------TAVEGQCR---------- 189
Query: 225 RKCQPGYDVSYEDDLNFGRIA--YSLPANEETIMREIF-RHGPVEGSMTIYADMILYKTG 281
Y L ++ Y++ + E ++ + GP ++ + +D ++Y++G
Sbjct: 190 ----------YNKQLGVAKVTGFYTVHSGSEVELKNLVGAEGPAAVAVDVESDFMMYRSG 239
Query: 282 IYKHVAGGPLG-EHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
IY+ PL HA+ +G+ GT YW+V NS+ +WGE G R+
Sbjct: 240 IYQSQTCSPLRVNHAVLAVGY-------GTQGGTDYWIVKNSWGLSWGERGYIRM 287
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 64/126 (50%), Gaps = 14/126 (11%)
Query: 377 YEDDLNFGRIA--YSLPANEETIMREIF-RHGPVEGSMTIYADMILYKTGIYKHVAGGPL 433
Y L ++ Y++ + E ++ + GP ++ + +D ++Y++GIY+ PL
Sbjct: 190 YNKQLGVAKVTGFYTVHSGSEVELKNLVGAEGPAAVAVDVESDFMMYRSGIYQSQTCSPL 249
Query: 434 G-EHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQ-NECGIEADIT 491
HA+ +G+G T YW+V NS+ +WGE G R+VR + N CGI +
Sbjct: 250 RVNHAVLAVGYG-------TQGGTDYWIVKNSWGLSWGERGYIRMVRNRGNMCGIAS--L 300
Query: 492 AGLPKI 497
A LP +
Sbjct: 301 ASLPMV 306
>pdb|1HUC|A Chain A, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|C Chain C, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|A Chain A, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|D Chain D, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|A Chain A, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 47
Score = 79.7 bits (195), Expect = 4e-15, Method: Composition-based stats.
Identities = 34/44 (77%), Positives = 37/44 (84%)
Query: 97 LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCI 140
LP FDAR WP CPTI+EIRDQGSCGS WA GAVEA+SDR+CI
Sbjct: 1 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICI 44
>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human
Procathepsin S
Length = 315
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 77/286 (26%), Positives = 124/286 (43%), Gaps = 56/286 (19%)
Query: 57 NALSKLTLSELEMRMGVHPDSKLPQNRLPLLVQLSDPLEELPEGFDARINWPYCPTIQEI 116
N L +T E+ M + ++P + S+P LP+ D W + E+
Sbjct: 62 NHLGDMTSEEV---MSLMSSLRVPSQWQRNITYKSNPNRILPDSVD----WREKGCVTEV 114
Query: 117 RDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKD-CGN-GCQGGFHGKA 174
+ QGSCG+ WA AV A+ ++ + + GK V LS+ +LV C + GN GC GGF A
Sbjct: 115 KYQGSCGAAWAFSAVGALEAQLKLKT-GKL-VSLSAQNLVDCSTEKYGNKGCNGGFMTTA 172
Query: 175 WKYWV-TTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQ-DNEPNTPECIRKCQPGYD 232
++Y + GI S +Y PY+ ++ CQ D++ C + +
Sbjct: 173 FQYIIDNKGIDSDASY-------PYKAMDQK--------CQYDSKYRAATCSKYTE---- 213
Query: 233 VSYEDDLNFGRIAYSLPANEETIMRE-IFRHGPVE-GSMTIYADMILYKTGIYKHVAGGP 290
LP E +++E + GPV G + LY++G+Y +
Sbjct: 214 ---------------LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ 258
Query: 291 LGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIG 336
H + ++G+G E YWLV NS+ N+GE G R+
Sbjct: 259 NVNHGVLVVGYGDLNGKE-------YWLVKNSWGHNFGEEGYIRMA 297
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 10/102 (9%)
Query: 390 LPANEETIMRE-IFRHGPVE-GSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEP 447
LP E +++E + GPV G + LY++G+Y + H + ++G+G
Sbjct: 214 LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLN 273
Query: 448 LGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQ-NECGIEA 488
E YWLV NS+ N+GE G R+ R + N CGI +
Sbjct: 274 GKE-------YWLVKNSWGHNFGEEGYIRMARNKGNHCGIAS 308
>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|B Chain B, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|C Chain C, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|D Chain D, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3KFQ|A Chain A, Unreduced Cathepsin V In Complex With Stefin A
pdb|3KFQ|B Chain B, Unreduced Cathepsin V In Complex With Stefin A
Length = 221
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 102/234 (43%), Gaps = 39/234 (16%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN 164
++W + +++Q CGS WA A A+ + + + + V LS +LV C + GN
Sbjct: 5 VDWRKKGYVTPVKNQKQCGSXWAFSATGALEGQ--MFRKTGKLVSLSEQNLVDCSRPQGN 62
Query: 165 -GCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPEC 223
GC GGF +A++Y + G S++ PY E
Sbjct: 63 QGCNGGFMARAFQY-----VKENGGLDSEE-SYPYVAVDE-------------------- 96
Query: 224 IRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTI-YADMILYKTGI 282
I K +P + S D F +A P E+ +M+ + GP+ +M ++ YK+GI
Sbjct: 97 ICKYRP--ENSVAQDTGFTVVA---PGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGI 151
Query: 283 YKHVAGGPLG-EHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
Y +H + ++G+G E S KYWLV NS+ WG NG +I
Sbjct: 152 YFEPDCSSKNLDHGVLVVGYGFEGANSDNS---KYWLVKNSWGPEWGSNGYVKI 202
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Query: 376 SYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTI-YADMILYKTGIYKHVAGGPLG 434
S D F +A P E+ +M+ + GP+ +M ++ YK+GIY
Sbjct: 105 SVAQDTGFTVVA---PGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKN 161
Query: 435 -EHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQ-NECGI 486
+H + ++G+G E S KYWLV NS+ WG NG +I + + N CGI
Sbjct: 162 LDHGVLVVGYGFEGANSDNS---KYWLVKNSWGPEWGSNGYVKIAKDKNNHCGI 212
>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra-
14013
Length = 217
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 107/236 (45%), Gaps = 47/236 (19%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSC-CKDCG 163
++W + E++ QGSCG+ WA AV A+ ++ + + + V LS+ +LV C K G
Sbjct: 5 VDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKL--KTGKLVSLSAQNLVDCSTKKYG 62
Query: 164 N-GCQGGFHGKAWKYWV-TTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTP 221
N GC GGF A++Y + GI S +Y PY+ M+
Sbjct: 63 NKGCNGGFMTTAFQYIIDNKGIDSDASY-------PYKA-----MD-------------- 96
Query: 222 ECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMRE-IFRHGPVE-GSMTIYADMILYK 279
+KCQ YD +Y R LP E +++E + GPV G + LY+
Sbjct: 97 ---QKCQ--YDSAYRAATC--RKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYR 149
Query: 280 TGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
+G+Y + H + ++G+G E YWLV NS+ N+GE G R+
Sbjct: 150 SGVYYEPSCTQNVNHGVLVVGYGDLNGKE-------YWLVKNSWGHNFGEKGYIRM 198
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 14/125 (11%)
Query: 367 RKCQPGYDVSYEDDLNFGRIAYSLPANEETIMRE-IFRHGPVE-GSMTIYADMILYKTGI 424
+KCQ YD +Y R LP E +++E + GPV G + LY++G+
Sbjct: 97 QKCQ--YDSAYRAATC--RKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGV 152
Query: 425 YKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQ-NE 483
Y + H + ++G+G E YWLV NS+ N+GE G R+ R + N
Sbjct: 153 YYEPSCTQNVNHGVLVVGYGDLNGKE-------YWLVKNSWGHNFGEKGYIRMARNKGNH 205
Query: 484 CGIEA 488
CGI +
Sbjct: 206 CGIAS 210
>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
pdb|1FH0|B Chain B, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
Length = 221
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 102/234 (43%), Gaps = 39/234 (16%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN 164
++W + +++Q CGS WA A A+ + + + + V LS +LV C + GN
Sbjct: 5 VDWRKKGYVTPVKNQKQCGSCWAFSATGALEGQ--MFRKTGKLVSLSEQNLVDCSRPQGN 62
Query: 165 -GCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPEC 223
GC GGF +A++Y + G S++ PY E
Sbjct: 63 QGCNGGFMARAFQY-----VKENGGLDSEES-YPYVAVDE-------------------- 96
Query: 224 IRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTI-YADMILYKTGI 282
I K +P + S D F +A P E+ +M+ + GP+ +M ++ YK+GI
Sbjct: 97 ICKYRP--ENSVAQDTGFTVVA---PGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGI 151
Query: 283 YKHVAGGPLG-EHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
Y +H + ++G+G E S KYWLV NS+ WG NG +I
Sbjct: 152 YFEPDCSSKNLDHGVLVVGYGFEGANSDNS---KYWLVKNSWGPEWGSNGYVKI 202
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Query: 376 SYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTI-YADMILYKTGIYKHVAGGPLG 434
S D F +A P E+ +M+ + GP+ +M ++ YK+GIY
Sbjct: 105 SVAQDTGFTVVA---PGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKN 161
Query: 435 -EHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQ-NECGI 486
+H + ++G+G E S KYWLV NS+ WG NG +I + + N CGI
Sbjct: 162 LDHGVLVVGYGFEGANSDNS---KYWLVKNSWGPEWGSNGYVKIAKDKNNHCGI 212
>pdb|3HWN|A Chain A, Cathepsin L With Az13010160
pdb|3HWN|B Chain B, Cathepsin L With Az13010160
pdb|3HWN|C Chain C, Cathepsin L With Az13010160
pdb|3HWN|D Chain D, Cathepsin L With Az13010160
Length = 258
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 75/284 (26%), Positives = 116/284 (40%), Gaps = 52/284 (18%)
Query: 57 NALSKLTLSELEMRMGVHPDSKLPQNRLPLLVQL-SDPL-EELPEGFDARINWPYCPTIQ 114
NA +T E M QNR P ++ +PL E P D W +
Sbjct: 3 NAFGDMTSEEFRQVMNGF------QNRKPRKGKVFQEPLFYEAPRSVD----WREKGYVT 52
Query: 115 EIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN-GCQGGFHGK 173
+++QG CGS WA A A+ + + + R + LS +LV C GN GC GG
Sbjct: 53 PVKNQGQCGSCWAFSATGALEGQ--MFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDY 110
Query: 174 AWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDV 233
A++Y G + + PYE + SC+ N P Y V
Sbjct: 111 AFQYVQDNGGL------DSEESYPYE--------ATEESCKYN------------PKYSV 144
Query: 234 SYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTI-YADMILYKTGIY-KHVAGGPL 291
+ +D F +P E+ +M+ + GP+ ++ + + YK GIY +
Sbjct: 145 A--NDAGF----VDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSED 198
Query: 292 GEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
+H + ++G+G E S KYWLV NS+ WG G ++
Sbjct: 199 MDHGVLVVGYGFEST---ESDNNKYWLVKNSWGEEWGMGGYVKM 239
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 14/133 (10%)
Query: 368 KCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTI-YADMILYKTGIY- 425
K P Y V+ +D F +P E+ +M+ + GP+ ++ + + YK GIY
Sbjct: 137 KYNPKYSVA--NDAGF----VDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYF 190
Query: 426 KHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRG-QNEC 484
+ +H + ++G+G E S KYWLV NS+ WG G ++ + +N C
Sbjct: 191 EPDCSSEDMDHGVLVVGYGFEST---ESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHC 247
Query: 485 GIEADITAGLPKI 497
GI + A P +
Sbjct: 248 GIAS--AASYPTV 258
>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L
Length = 316
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 117/285 (41%), Gaps = 52/285 (18%)
Query: 57 NALSKLTLSELEMRMGVHPDSKLPQNRLPLLVQ-LSDPL-EELPEGFDARINWPYCPTIQ 114
NA +T E M QNR P + +PL E P D W +
Sbjct: 61 NAFGDMTSEEFRQVMNGF------QNRKPRKGKVFQEPLFYEAPRSVD----WREKGYVT 110
Query: 115 EIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN-GCQGGFHGK 173
+++QG CGS WA A A+ + + + R + LS +LV C GN GC GG
Sbjct: 111 PVKNQGQCGSXWAFSATGALEGQ--MFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDY 168
Query: 174 AWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDV 233
A++Y + G S++ PYE + SC+ N P Y V
Sbjct: 169 AFQY-----VQDNGGLDSEE-SYPYE--------ATEESCKYN------------PKYSV 202
Query: 234 SYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTI-YADMILYKTGIY-KHVAGGPL 291
+ +D F +P E+ +M+ + GP+ ++ + + YK GIY +
Sbjct: 203 A--NDAGF----VDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSED 256
Query: 292 GEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIG 336
+H + ++G+G E S KYWLV NS+ WG G ++
Sbjct: 257 MDHGVLVVGYGFEST---ESDNNKYWLVKNSWGEEWGMGGYVKMA 298
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 14/133 (10%)
Query: 368 KCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTI-YADMILYKTGIY- 425
K P Y V+ +D F +P E+ +M+ + GP+ ++ + + YK GIY
Sbjct: 195 KYNPKYSVA--NDAGF----VDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYF 248
Query: 426 KHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRG-QNEC 484
+ +H + ++G+G E S KYWLV NS+ WG G ++ + +N C
Sbjct: 249 EPDCSSEDMDHGVLVVGYGFEST---ESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHC 305
Query: 485 GIEADITAGLPKI 497
GI + A P +
Sbjct: 306 GIAS--AASYPTV 316
>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
pdb|1S4V|B Chain B, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
Length = 229
Score = 72.0 bits (175), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 97/236 (41%), Gaps = 45/236 (19%)
Query: 103 ARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDC 162
A ++W + ++DQG CGS WA + A+ I + + V LS +LV C D
Sbjct: 4 ASVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTN--KLVSLSEQELVDCDTDQ 61
Query: 163 GNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPE 222
GC GG A+++ G ++ + PYE +C ++ N P
Sbjct: 62 NQGCNGGLMDYAFEFIKQRGGIT------TEANYPYE--------AYDGTCDVSKENAPA 107
Query: 223 CIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYA---DMILYK 279
VS + N +P N+E + + + PV S+ I A D Y
Sbjct: 108 ----------VSIDGHEN-------VPENDENALLKAVANQPV--SVAIDAGGSDFQFYS 148
Query: 280 TGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
G++ G L +H + I+G+G G KYW V NS+ WGE G R+
Sbjct: 149 EGVFTGSCGTEL-DHGVAIVGYGTTIDG------TKYWTVKNSWGPEWGEKGYIRM 197
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 16/115 (13%)
Query: 389 SLPANEETIMREIFRHGPVEGSMTIYA---DMILYKTGIYKHVAGGPLGEHAIRIIGWGQ 445
++P N+E + + + PV S+ I A D Y G++ G L +H + I+G+G
Sbjct: 115 NVPENDENALLKAVANQPV--SVAIDAGGSDFQFYSEGVFTGSCGTEL-DHGVAIVGYGT 171
Query: 446 EPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNE----CGIEADITAGLPK 496
G KYW V NS+ WGE G R+ RG ++ CGI + + + K
Sbjct: 172 TIDG------TKYWTVKNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASYPIKK 220
>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform
Length = 312
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 76/284 (26%), Positives = 118/284 (41%), Gaps = 52/284 (18%)
Query: 57 NALSKLTLSELEMRMGVHPDSKLPQNRLPLLVQL-SDPL-EELPEGFDARINWPYCPTIQ 114
NA +T E M QNR P ++ +PL E P D W +
Sbjct: 57 NAFGDMTSEEFRQVMNG------LQNRKPRKGKVFQEPLFYEAPRSVD----WREKGYVT 106
Query: 115 EIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN-GCQGGFHGK 173
+++QG CGS WA A A+ + + + R + LS +LV C GN GC GG
Sbjct: 107 PVKNQGQCGSSWAFSATGALEGQ--MFRKTGRLISLSEQNLVDCSGPEGNEGCNGGLMDY 164
Query: 174 AWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDV 233
A++Y + G S++ PYE + SC+ N P Y V
Sbjct: 165 AFQY-----VQDNGGLDSEE-SYPYE--------ATEESCKYN------------PKYSV 198
Query: 234 SYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTI-YADMILYKTGIY-KHVAGGPL 291
+ +D F +P E+ +M+ + GP+ ++ + + YK GIY +
Sbjct: 199 A--NDAGF----VDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSED 252
Query: 292 GEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
+H + ++G+G E S KYWLV NS+ WG G ++
Sbjct: 253 MDHGVLVVGYGFEST---ESDGNKYWLVKNSWGEEWGMGGYVKM 293
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 14/133 (10%)
Query: 368 KCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTI-YADMILYKTGIY- 425
K P Y V+ +D F +P E+ +M+ + GP+ ++ + + YK GIY
Sbjct: 191 KYNPKYSVA--NDAGF----VDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYF 244
Query: 426 KHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRG-QNEC 484
+ +H + ++G+G E S KYWLV NS+ WG G ++ + +N C
Sbjct: 245 EPDCSSEDMDHGVLVVGYGFEST---ESDGNKYWLVKNSWGEEWGMGGYVKMAKDRRNHC 301
Query: 485 GIEADITAGLPKI 497
GI + A P +
Sbjct: 302 GIAS--AASYPTV 312
>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
pdb|1DEU|B Chain B, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
Length = 277
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 102/252 (40%), Gaps = 37/252 (14%)
Query: 96 ELPEGFDAR----INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLS 151
+LP+ +D R +N+ Q I CGS WA + AM+DR+ I +G L
Sbjct: 35 DLPKSWDWRNVDGVNYASITRNQHIPQY--CGSCWAHASTSAMADRINIKRKGAWPSTLL 92
Query: 152 SDDLVSCCKDCGNG--CQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGS 209
S V DCGN C+GG W Y GI P E C Y
Sbjct: 93 S---VQNVIDCGNAGSCEGGNDLSVWDYAHQHGI-------------PDET-CNNYQAKD 135
Query: 210 HSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSM 269
+ N+ T ++C + + ++G ++ E +M EI+ +GP+ +
Sbjct: 136 QECDKFNQCGTCNEFKECHAIRNYTLWRVGDYGSLS-----GREKMMAEIYANGPISCGI 190
Query: 270 TIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGE 329
+ Y GIY H + + GWG + +GT +YW+V NS+ WGE
Sbjct: 191 MATERLANYTGGIYAEYQDTTYINHVVSVAGWG---ISDGT----EYWIVRNSWGEPWGE 243
Query: 330 NGLFRIGCRPYE 341
G RI Y+
Sbjct: 244 RGWLRIVTSTYK 255
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 388 YSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEP 447
Y + E +M EI+ +GP+ + + Y GIY H + + GWG
Sbjct: 167 YGSLSGREKMMAEIYANGPISCGIMATERLANYTGGIYAEYQDTTYINHVVSVAGWG--- 223
Query: 448 LGEGTSSVVKYWLVANSFNTNWGENGLFRIV 478
+ +GT +YW+V NS+ WGE G RIV
Sbjct: 224 ISDGT----EYWIVRNSWGEPWGERGWLRIV 250
>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor,
Chagasin, In Complex With Human Cathepsin L
Length = 221
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 102/234 (43%), Gaps = 40/234 (17%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN 164
++W + +++QG CGS WA A A+ + + + R + LS +LV C GN
Sbjct: 6 VDWREKGYVTPVKNQGQCGSAWAFSATGALEGQ--MFRKTGRLISLSEQNLVDCSGPQGN 63
Query: 165 -GCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPEC 223
GC GG A++Y + G S++ PYE + SC+ N
Sbjct: 64 EGCNGGLMDYAFQY-----VQDNGGLDSEE-SYPYE--------ATEESCKYN------- 102
Query: 224 IRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTI-YADMILYKTGI 282
P Y V+ +D F +P E+ +M+ + GP+ ++ + + YK GI
Sbjct: 103 -----PKYSVA--NDTGF----VDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGI 151
Query: 283 Y-KHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
Y + +H + ++G+G E S KYWLV NS+ WG G ++
Sbjct: 152 YFEPDCSSEDMDHGVLVVGYGFEST---ESDNNKYWLVKNSWGEEWGMGGYVKM 202
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 14/133 (10%)
Query: 368 KCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTI-YADMILYKTGIY- 425
K P Y V+ +D F +P E+ +M+ + GP+ ++ + + YK GIY
Sbjct: 100 KYNPKYSVA--NDTGF----VDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYF 153
Query: 426 KHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRG-QNEC 484
+ +H + ++G+G E S KYWLV NS+ WG G ++ + +N C
Sbjct: 154 EPDCSSEDMDHGVLVVGYGFEST---ESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHC 210
Query: 485 GIEADITAGLPKI 497
GI + A P +
Sbjct: 211 GIAS--AASYPTV 221
>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra-
14009
Length = 217
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 106/236 (44%), Gaps = 47/236 (19%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKD-CG 163
++W + E++ QGSCG+ WA AV A+ ++ + + + V LS+ +LV C + G
Sbjct: 5 VDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKT--GKLVSLSAQNLVDCSTEKYG 62
Query: 164 N-GCQGGFHGKAWKYWV-TTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTP 221
N GC GGF A++Y + GI S +Y PY+ M+
Sbjct: 63 NKGCNGGFMTTAFQYIIDNKGIDSDASY-------PYKA-----MD-------------- 96
Query: 222 ECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMRE-IFRHGPVE-GSMTIYADMILYK 279
+KCQ YD Y R LP E +++E + GPV G + LY+
Sbjct: 97 ---QKCQ--YDSKYRAAT--CRKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYR 149
Query: 280 TGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
+G+Y + H + ++G+G E YWLV NS+ N+GE G R+
Sbjct: 150 SGVYYEPSCTQNVNHGVLVVGYGDLNGKE-------YWLVKNSWGHNFGEKGYIRM 198
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 58/125 (46%), Gaps = 14/125 (11%)
Query: 367 RKCQPGYDVSYEDDLNFGRIAYSLPANEETIMRE-IFRHGPVE-GSMTIYADMILYKTGI 424
+KCQ YD Y R LP E +++E + GPV G + LY++G+
Sbjct: 97 QKCQ--YDSKYRAATC--RKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGV 152
Query: 425 YKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQ-NE 483
Y + H + ++G+G E YWLV NS+ N+GE G R+ R + N
Sbjct: 153 YYEPSCTQNVNHGVLVVGYGDLNGKE-------YWLVKNSWGHNFGEKGYIRMARNKGNH 205
Query: 484 CGIEA 488
CGI +
Sbjct: 206 CGIAS 210
>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPE|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 220
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 106/238 (44%), Gaps = 49/238 (20%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKD-CG 163
++W + E++ QGSCG+ WA AV A+ ++ + + + V LS+ +LV C + G
Sbjct: 6 VDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKL--KTGKLVSLSAQNLVDCSTEKYG 63
Query: 164 N-GCQGGFHGKAWKYWV-TTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQ-DNEPNT 220
N GC GGF A++Y + GI S +Y PY+ ++ CQ D++
Sbjct: 64 NKGCNGGFMTTAFQYIIDNKGIDSDASY-------PYKAMDQK--------CQYDSKYRA 108
Query: 221 PECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMRE-IFRHGPVE-GSMTIYADMILY 278
C + + LP E +++E + GPV G + LY
Sbjct: 109 ATCSKYTE-------------------LPYGREDVLKEAVANKGPVSVGVDARHPSFFLY 149
Query: 279 KTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIG 336
++G+Y + H + ++G+G E YWLV NS+ N+GE G R+
Sbjct: 150 RSGVYYEPSCTQNVNHGVLVVGYGDLNGKE-------YWLVKNSWGHNFGEEGYIRMA 200
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 10/102 (9%)
Query: 390 LPANEETIMRE-IFRHGPVE-GSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEP 447
LP E +++E + GPV G + LY++G+Y + H + ++G+G
Sbjct: 117 LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLN 176
Query: 448 LGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQ-NECGIEA 488
E YWLV NS+ N+GE G R+ R + N CGI +
Sbjct: 177 GKE-------YWLVKNSWGHNFGEEGYIRMARNKGNHCGIAS 211
>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
pdb|3IEJ|B Chain B, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
Length = 222
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 106/237 (44%), Gaps = 49/237 (20%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKD-CG 163
++W + E++ QGSCG+ WA AV A+ ++ + + + V LS+ +LV C + G
Sbjct: 7 VDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKL--KTGKLVSLSAQNLVDCSTEKYG 64
Query: 164 N-GCQGGFHGKAWKYWV-TTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQ-DNEPNT 220
N GC GGF A++Y + GI S +Y PY+ ++ CQ D++
Sbjct: 65 NKGCNGGFMTTAFQYIIDNKGIDSDASY-------PYKAMDQK--------CQYDSKYRA 109
Query: 221 PECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMRE-IFRHGPVE-GSMTIYADMILY 278
C + + LP E +++E + GPV G + LY
Sbjct: 110 ATCSKYTE-------------------LPYGREDVLKEAVANKGPVSVGVDARHPSFFLY 150
Query: 279 KTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
++G+Y + H + ++G+G E YWLV NS+ N+GE G R+
Sbjct: 151 RSGVYYEPSCTQNVNHGVLVVGYGDLNGKE-------YWLVKNSWGHNFGEEGYIRM 200
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 10/102 (9%)
Query: 390 LPANEETIMRE-IFRHGPVE-GSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEP 447
LP E +++E + GPV G + LY++G+Y + H + ++G+G
Sbjct: 118 LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLN 177
Query: 448 LGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQ-NECGIEA 488
E YWLV NS+ N+GE G R+ R + N CGI +
Sbjct: 178 GKE-------YWLVKNSWGHNFGEEGYIRMARNKGNHCGIAS 212
>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3IV2|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3K24|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
pdb|3K24|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
Length = 220
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 102/234 (43%), Gaps = 40/234 (17%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN 164
++W + +++QG CGS WA A A+ + + + R + LS +LV C GN
Sbjct: 5 VDWREKGYVTPVKNQGQCGSAWAFSATGALEGQ--MFRKTGRLISLSEQNLVDCSGPQGN 62
Query: 165 -GCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPEC 223
GC GG A++Y + G S++ PYE + SC+ N
Sbjct: 63 EGCNGGLMDYAFQY-----VQDNGGLDSEE-SYPYE--------ATEESCKYN------- 101
Query: 224 IRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTI-YADMILYKTGI 282
P Y V+ +D F +P E+ +M+ + GP+ ++ + + YK GI
Sbjct: 102 -----PKYSVA--NDTGF----VDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGI 150
Query: 283 Y-KHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
Y + +H + ++G+G E S KYWLV NS+ WG G ++
Sbjct: 151 YFEPDCSSEDMDHGVLVVGYGFEST---ESDNNKYWLVKNSWGEEWGMGGYVKM 201
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 14/133 (10%)
Query: 368 KCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTI-YADMILYKTGIY- 425
K P Y V+ +D F +P E+ +M+ + GP+ ++ + + YK GIY
Sbjct: 99 KYNPKYSVA--NDTGF----VDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYF 152
Query: 426 KHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRG-QNEC 484
+ +H + ++G+G E S KYWLV NS+ WG G ++ + +N C
Sbjct: 153 EPDCSSEDMDHGVLVVGYGFEST---ESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHC 209
Query: 485 GIEADITAGLPKI 497
GI + A P +
Sbjct: 210 GIAS--AASYPTV 220
>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3KWN|B Chain B, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3MPF|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPF|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 219
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 106/237 (44%), Gaps = 49/237 (20%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKD-CG 163
++W + E++ QGSCG+ WA AV A+ ++ + + + V LS+ +LV C + G
Sbjct: 5 VDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKL--KTGKLVSLSAQNLVDCSTEKYG 62
Query: 164 N-GCQGGFHGKAWKYWV-TTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQ-DNEPNT 220
N GC GGF A++Y + GI S +Y PY+ ++ CQ D++
Sbjct: 63 NKGCNGGFMTTAFQYIIDNKGIDSDASY-------PYKAMDQK--------CQYDSKYRA 107
Query: 221 PECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMRE-IFRHGPVE-GSMTIYADMILY 278
C + + LP E +++E + GPV G + LY
Sbjct: 108 ATCSKYTE-------------------LPYGREDVLKEAVANKGPVSVGVDARHPSFFLY 148
Query: 279 KTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
++G+Y + H + ++G+G E YWLV NS+ N+GE G R+
Sbjct: 149 RSGVYYEPSCTQNVNHGVLVVGYGDLNGKE-------YWLVKNSWGHNFGEEGYIRM 198
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 10/102 (9%)
Query: 390 LPANEETIMRE-IFRHGPVE-GSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEP 447
LP E +++E + GPV G + LY++G+Y + H + ++G+G
Sbjct: 116 LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLN 175
Query: 448 LGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQ-NECGIEA 488
E YWLV NS+ N+GE G R+ R + N CGI +
Sbjct: 176 GKE-------YWLVKNSWGHNFGEEGYIRMARNKGNHCGIAS 210
>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S
Length = 217
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 104/236 (44%), Gaps = 47/236 (19%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKD-CG 163
++W + E++ QGSCG+ WA AV A+ ++ + + + V LS+ +LV C + G
Sbjct: 5 VDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKL--KTGKLVSLSAQNLVDCSTEKYG 62
Query: 164 N-GCQGGFHGKAWKYWV-TTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTP 221
N GC GGF A++Y + GI S +Y K ++ C+ D++
Sbjct: 63 NKGCNGGFMTTAFQYIIDNKGIDSDASYPYK----AMDLKCQ----------YDSKYRAA 108
Query: 222 ECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMRE-IFRHGPVE-GSMTIYADMILYK 279
C + + LP E +++E + GPV G + LY+
Sbjct: 109 TCSKYTE-------------------LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYR 149
Query: 280 TGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
+G+Y + H + ++G+G E YWLV NS+ N+GE G R+
Sbjct: 150 SGVYYEPSCTQNVNHGVLVVGYGDLNGKE-------YWLVKNSWGHNFGEEGYIRM 198
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 10/102 (9%)
Query: 390 LPANEETIMRE-IFRHGPVE-GSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEP 447
LP E +++E + GPV G + LY++G+Y + H + ++G+G
Sbjct: 116 LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLN 175
Query: 448 LGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQ-NECGIEA 488
E YWLV NS+ N+GE G R+ R + N CGI +
Sbjct: 176 GKE-------YWLVKNSWGHNFGEEGYIRMARNKGNHCGIAS 210
>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|B Chain B, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|C Chain C, Unreduced Cathepsin L In Complex With Stefin A
Length = 220
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 102/234 (43%), Gaps = 40/234 (17%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN 164
++W + +++QG CGS WA A A+ + + + R + LS +LV C GN
Sbjct: 5 VDWREKGYVTPVKNQGQCGSXWAFSATGALEGQ--MFRKTGRLISLSEQNLVDCSGPQGN 62
Query: 165 -GCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPEC 223
GC GG A++Y + G S++ PYE + SC+ N
Sbjct: 63 EGCNGGLMDYAFQY-----VQDNGGLDSEE-SYPYE--------ATEESCKYN------- 101
Query: 224 IRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTI-YADMILYKTGI 282
P Y V+ +D F +P E+ +M+ + GP+ ++ + + YK GI
Sbjct: 102 -----PKYSVA--NDAGF----VDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGI 150
Query: 283 Y-KHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
Y + +H + ++G+G E S KYWLV NS+ WG G ++
Sbjct: 151 YFEPDCSSEDMDHGVLVVGYGFEST---ESDDNKYWLVKNSWGEEWGMGGYVKM 201
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 14/133 (10%)
Query: 368 KCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTI-YADMILYKTGIY- 425
K P Y V+ +D F +P E+ +M+ + GP+ ++ + + YK GIY
Sbjct: 99 KYNPKYSVA--NDAGF----VDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYF 152
Query: 426 KHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRG-QNEC 484
+ +H + ++G+G E S KYWLV NS+ WG G ++ + +N C
Sbjct: 153 EPDCSSEDMDHGVLVVGYGFEST---ESDDNKYWLVKNSWGEEWGMGGYVKMAKDRRNHC 209
Query: 485 GIEADITAGLPKI 497
GI + A P +
Sbjct: 210 GIAS--AASYPTV 220
>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio
Molitor Larval Midgut
Length = 329
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 111/261 (42%), Gaps = 55/261 (21%)
Query: 78 KLPQN-RLPLLVQLSDPLEELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSD 136
K P+N R+P V PL A ++W + E++DQG CGS W+ A+
Sbjct: 100 KHPENLRMPY-VSSKKPLA-------ASVDWR-SNAVSEVKDQGQCGSSWSFSTTGAVEG 150
Query: 137 RVCIASRGKRHVRLSSDDLVSCCKDCGN-GCQGGFHGKAWKYWVTTGIVSGGTYASKQGC 195
++ + RG R LS +L+ C GN GC GG+ A+ Y GI+S Y
Sbjct: 151 QLAL-QRG-RLTSLSEQNLIDCSSSYGNAGCDGGWMDSAFSYIHDYGIMSESAY------ 202
Query: 196 RPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPA-NEET 254
PYE + C+ + + + GY Y LP+ +E +
Sbjct: 203 -PYEAQGDY--------CRFDSSQSVTTL----SGY--------------YDLPSGDENS 235
Query: 255 IMREIFRHGPVEGSMTIYADMILYKTGI-YKHVAGGPLGEHAIRIIGWGQEPLGEGTSSV 313
+ + + GPV ++ ++ Y G+ Y H + ++G+G + +
Sbjct: 236 LADAVGQAGPVAVAIDATDELQFYSGGLFYDQTCNQSDLNHGVLVVGYGSD-------NG 288
Query: 314 VKYWLVANSFNTNWGENGLFR 334
YW++ NS+ + WGE+G +R
Sbjct: 289 QDYWILKNSWGSGWGESGYWR 309
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 10/102 (9%)
Query: 388 YSLPA-NEETIMREIFRHGPVEGSMTIYADMILYKTGI-YKHVAGGPLGEHAIRIIGWGQ 445
Y LP+ +E ++ + + GPV ++ ++ Y G+ Y H + ++G+G
Sbjct: 226 YDLPSGDENSLADAVGQAGPVAVAIDATDELQFYSGGLFYDQTCNQSDLNHGVLVVGYGS 285
Query: 446 EPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQ-NECGI 486
+ + YW++ NS+ + WGE+G +R VR N CGI
Sbjct: 286 D-------NGQDYWILKNSWGSGWGESGYWRQVRNYGNNCGI 320
>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3BC3|B Chain B, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3H8C|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
pdb|3H8C|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
Length = 220
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 102/234 (43%), Gaps = 40/234 (17%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN 164
++W + +++QG CGS WA A A+ + + + R + LS +LV C GN
Sbjct: 5 VDWREKGYVTPVKNQGQCGSXWAFSATGALEGQ--MFRKTGRLISLSEQNLVDCSGPQGN 62
Query: 165 -GCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPEC 223
GC GG A++Y + G S++ PYE + SC+ N
Sbjct: 63 EGCNGGLMDYAFQY-----VQDNGGLDSEE-SYPYE--------ATEESCKYN------- 101
Query: 224 IRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTI-YADMILYKTGI 282
P Y V+ +D F +P E+ +M+ + GP+ ++ + + YK GI
Sbjct: 102 -----PKYSVA--NDTGF----VDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGI 150
Query: 283 Y-KHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
Y + +H + ++G+G E S KYWLV NS+ WG G ++
Sbjct: 151 YFEPDCSSEDMDHGVLVVGYGFEST---ESDNNKYWLVKNSWGEEWGMGGYVKM 201
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 14/133 (10%)
Query: 368 KCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTI-YADMILYKTGIY- 425
K P Y V+ +D F +P E+ +M+ + GP+ ++ + + YK GIY
Sbjct: 99 KYNPKYSVA--NDTGF----VDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYF 152
Query: 426 KHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRG-QNEC 484
+ +H + ++G+G E S KYWLV NS+ WG G ++ + +N C
Sbjct: 153 EPDCSSEDMDHGVLVVGYGFEST---ESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHC 209
Query: 485 GIEADITAGLPKI 497
GI + A P +
Sbjct: 210 GIAS--AASYPTV 220
>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X
pdb|1EF7|B Chain B, Crystal Structure Of Human Cathepsin X
Length = 242
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 101/251 (40%), Gaps = 37/251 (14%)
Query: 97 LPEGFDAR----INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSS 152
LP+ +D R +N+ Q I CGS WA + AM+DR+ I +G L S
Sbjct: 1 LPKSWDWRNVDGVNYASITRNQHIPQY--CGSCWAHASTSAMADRINIKRKGAWPSTLLS 58
Query: 153 DDLVSCCKDCGNG--CQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSH 210
V DCGN C+GG W Y GI P E C Y
Sbjct: 59 ---VQNVIDCGNAGSCEGGNDLSVWDYAHQHGI-------------PDET-CNNYQAKDQ 101
Query: 211 SSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMT 270
+ N+ T ++C + + ++G ++ E +M EI+ +GP+ +
Sbjct: 102 ECDKFNQCGTCNEFKECHAIRNYTLWRVGDYGSLS-----GREKMMAEIYANGPISCGIM 156
Query: 271 IYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGEN 330
+ Y GIY H + + GWG + +GT +YW+V NS+ WGE
Sbjct: 157 ATERLANYTGGIYAEYQDTTYINHVVSVAGWG---ISDGT----EYWIVRNSWGEPWGER 209
Query: 331 GLFRIGCRPYE 341
G RI Y+
Sbjct: 210 GWLRIVTSTYK 220
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 388 YSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEP 447
Y + E +M EI+ +GP+ + + Y GIY H + + GWG
Sbjct: 132 YGSLSGREKMMAEIYANGPISCGIMATERLANYTGGIYAEYQDTTYINHVVSVAGWG--- 188
Query: 448 LGEGTSSVVKYWLVANSFNTNWGENGLFRIV 478
+ +GT +YW+V NS+ WGE G RIV
Sbjct: 189 ISDGT----EYWIVRNSWGEPWGERGWLRIV 215
>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2F1G|B Chain B, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2HH5|B Chain B, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2HH5|A Chain A, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2H7J|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2H7J|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2HXZ|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|C Chain C, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HHN|A Chain A, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2HHN|B Chain B, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2OP3|A Chain A, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
pdb|2OP3|B Chain B, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
Length = 220
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 106/238 (44%), Gaps = 49/238 (20%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKD-CG 163
++W + E++ QGSCG+ WA AV A+ ++ + + + V LS+ +LV C + G
Sbjct: 8 VDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKL--KTGKLVSLSAQNLVDCSTEKYG 65
Query: 164 N-GCQGGFHGKAWKYWV-TTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQ-DNEPNT 220
N GC GGF A++Y + GI S +Y PY+ ++ CQ D++
Sbjct: 66 NKGCNGGFMTTAFQYIIDNKGIDSDASY-------PYKAMDQK--------CQYDSKYRA 110
Query: 221 PECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMRE-IFRHGPVE-GSMTIYADMILY 278
C + + LP E +++E + GPV G + LY
Sbjct: 111 ATCSKYTE-------------------LPYGREDVLKEAVANKGPVSVGVDARHPSFFLY 151
Query: 279 KTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIG 336
++G+Y + H + ++G+G E YWLV NS+ N+GE G R+
Sbjct: 152 RSGVYYEPSCTQNVNHGVLVVGYGDLNGKE-------YWLVKNSWGHNFGEEGYIRMA 202
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 10/102 (9%)
Query: 390 LPANEETIMRE-IFRHGPVE-GSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEP 447
LP E +++E + GPV G + LY++G+Y + H + ++G+G
Sbjct: 119 LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLN 178
Query: 448 LGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQ-NECGIEA 488
E YWLV NS+ N+GE G R+ R + N CGI +
Sbjct: 179 GKE-------YWLVKNSWGHNFGEEGYIRMARNKGNHCGIAS 213
>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5V|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5X|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 97/236 (41%), Gaps = 49/236 (20%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN 164
++W + +I+DQG CGS WA + A+ IA+ + LS +LV C +
Sbjct: 5 VDWRSSGAVVDIKDQGQCGSXWAFSTIAAVEGINKIAT--GDLISLSEQELVDCGRTQNT 62
Query: 165 -GCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPEC 223
GC GGF +++ + G + + E N P
Sbjct: 63 RGCDGGFMTDGFQFIINNGGI------------------------------NTEANYPYT 92
Query: 224 IRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYA-DMILYKTGI 282
+ Q D+ E ++ ++P N E ++ + PV ++ + Y +GI
Sbjct: 93 AEEGQCNLDLQQEKYVSIDTYE-NVPYNNEWALQTAVAYQPVSVALEAAGYNFQHYSSGI 151
Query: 283 YKHVAGGPLG---EHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
+ GP G +HA+ I+G+G T + YW+V NS+ T WGE G RI
Sbjct: 152 FT----GPCGTAVDHAVTIVGYG-------TEGGIDYWIVKNSWGTTWGEEGYMRI 196
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 62/135 (45%), Gaps = 19/135 (14%)
Query: 359 EPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYA-DM 417
E N P + Q D+ E ++ ++P N E ++ + PV ++ +
Sbjct: 86 EANYPYTAEEGQCNLDLQQEKYVSIDTYE-NVPYNNEWALQTAVAYQPVSVALEAAGYNF 144
Query: 418 ILYKTGIYKHVAGGPLG---EHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGL 474
Y +GI+ GP G +HA+ I+G+G T + YW+V NS+ T WGE G
Sbjct: 145 QHYSSGIFT----GPCGTAVDHAVTIVGYG-------TEGGIDYWIVKNSWGTTWGEEGY 193
Query: 475 FRIVR---GQNECGI 486
RI R G +CGI
Sbjct: 194 MRIQRNVGGVGQCGI 208
>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N3G|B Chain B, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N4C|A Chain A, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
pdb|3N4C|B Chain B, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
Length = 217
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 106/237 (44%), Gaps = 49/237 (20%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKD-CG 163
++W + E++ QGSCG+ WA AV A+ ++ + + + V LS+ +LV C + G
Sbjct: 5 VDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKL--KTGKLVSLSAQNLVDCSTEKYG 62
Query: 164 N-GCQGGFHGKAWKYWV-TTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQ-DNEPNT 220
N GC GGF A++Y + GI S +Y PY+ ++ CQ D++
Sbjct: 63 NKGCNGGFMTTAFQYIIDNKGIDSDASY-------PYKAMDQK--------CQYDSKYRA 107
Query: 221 PECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMRE-IFRHGPVE-GSMTIYADMILY 278
C + + LP E +++E + GPV G + LY
Sbjct: 108 ATCSKYTE-------------------LPYGREDVLKEAVANKGPVSVGVDARHPSFFLY 148
Query: 279 KTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
++G+Y + H + ++G+G E YWLV NS+ N+GE G R+
Sbjct: 149 RSGVYYEPSCTQNVNHGVLVVGYGDLNGKE-------YWLVKNSWGHNFGEEGYIRM 198
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 10/102 (9%)
Query: 390 LPANEETIMRE-IFRHGPVE-GSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEP 447
LP E +++E + GPV G + LY++G+Y + H + ++G+G
Sbjct: 116 LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLN 175
Query: 448 LGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQ-NECGIEA 488
E YWLV NS+ N+GE G R+ R + N CGI +
Sbjct: 176 GKE-------YWLVKNSWGHNFGEEGYIRMARNKGNHCGIAS 210
>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
pdb|3OVX|B Chain B, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
Length = 218
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 106/237 (44%), Gaps = 49/237 (20%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKD-CG 163
++W + E++ QGSCG+ WA AV A+ ++ + + + V LS+ +LV C + G
Sbjct: 6 VDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKL--KTGKLVSLSAQNLVDCSTEKYG 63
Query: 164 N-GCQGGFHGKAWKYWV-TTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQ-DNEPNT 220
N GC GGF A++Y + GI S +Y PY+ ++ CQ D++
Sbjct: 64 NKGCNGGFMTTAFQYIIDNKGIDSDASY-------PYKAMDQK--------CQYDSKYRA 108
Query: 221 PECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMRE-IFRHGPVE-GSMTIYADMILY 278
C + + LP E +++E + GPV G + LY
Sbjct: 109 ATCSKYTE-------------------LPYGREDVLKEAVANKGPVSVGVDARHPSFFLY 149
Query: 279 KTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
++G+Y + H + ++G+G E YWLV NS+ N+GE G R+
Sbjct: 150 RSGVYYEPSCTQNVNHGVLVVGYGDLNGKE-------YWLVKNSWGHNFGEEGYIRM 199
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 10/102 (9%)
Query: 390 LPANEETIMRE-IFRHGPVE-GSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEP 447
LP E +++E + GPV G + LY++G+Y + H + ++G+G
Sbjct: 117 LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLN 176
Query: 448 LGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQ-NECGIEA 488
E YWLV NS+ N+GE G R+ R + N CGI +
Sbjct: 177 GKE-------YWLVKNSWGHNFGEEGYIRMARNKGNHCGIAS 211
>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible
Inhibition Of Human Cathepsin L By Their Respective
Dipeptidyl Glyoxal And Diazomethylketone Inhibitors
pdb|3OF9|A Chain A, Structural Basis For Irreversible Inhibition Of Human
Cathepsin L By A Diazomethylketone Inhibitor
Length = 221
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 102/234 (43%), Gaps = 40/234 (17%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN 164
++W + +++QG CGS WA A A+ + + + R + LS +LV C GN
Sbjct: 6 VDWREKGYVTPVKNQGQCGSCWAFSATGALEGQ--MFRKTGRLISLSEQNLVDCSGPQGN 63
Query: 165 -GCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPEC 223
GC GG A++Y + G S++ PYE + SC+ N
Sbjct: 64 EGCNGGLMDYAFQY-----VQDNGGLDSEES-YPYE--------ATEESCKYN------- 102
Query: 224 IRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTI-YADMILYKTGI 282
P Y V+ +D F +P E+ +M+ + GP+ ++ + + YK GI
Sbjct: 103 -----PKYSVA--NDTGF----VDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGI 151
Query: 283 Y-KHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
Y + +H + ++G+G E S KYWLV NS+ WG G ++
Sbjct: 152 YFEPDCSSEDMDHGVLVVGYGFEST---ESDNNKYWLVKNSWGEEWGMGGYVKM 202
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 14/133 (10%)
Query: 368 KCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTI-YADMILYKTGIY- 425
K P Y V+ +D F +P E+ +M+ + GP+ ++ + + YK GIY
Sbjct: 100 KYNPKYSVA--NDTGF----VDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYF 153
Query: 426 KHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRG-QNEC 484
+ +H + ++G+G E S KYWLV NS+ WG G ++ + +N C
Sbjct: 154 EPDCSSEDMDHGVLVVGYGFEST---ESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHC 210
Query: 485 GIEADITAGLPKI 497
GI + A P +
Sbjct: 211 GIAS--AASYPTV 221
>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor
pdb|2FQ9|B Chain B, Cathepsin S With Nitrile Inhibitor
pdb|2FRA|A Chain A, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRA|B Chain B, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRQ|A Chain A, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FRQ|B Chain B, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FT2|A Chain A, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FT2|B Chain B, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FUD|A Chain A, Human Cathepsin S With Inhibitor Cra-27566
pdb|2FUD|B Chain B, Human Cathepsin S With Inhibitor Cra-27566
pdb|2G7Y|A Chain A, Human Cathepsin S With Inhibitor Cra-16981
pdb|2G7Y|B Chain B, Human Cathepsin S With Inhibitor Cra-16981
Length = 225
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 106/237 (44%), Gaps = 49/237 (20%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKD-CG 163
++W + E++ QGSCG+ WA AV A+ ++ + + + V LS+ +LV C + G
Sbjct: 6 VDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKL--KTGKLVSLSAQNLVDCSTEKYG 63
Query: 164 N-GCQGGFHGKAWKYWV-TTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQ-DNEPNT 220
N GC GGF A++Y + GI S +Y PY+ ++ CQ D++
Sbjct: 64 NKGCNGGFMTTAFQYIIDNKGIDSDASY-------PYKAMDQK--------CQYDSKYRA 108
Query: 221 PECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMRE-IFRHGPVE-GSMTIYADMILY 278
C + + LP E +++E + GPV G + LY
Sbjct: 109 ATCSKYTE-------------------LPYGREDVLKEAVANKGPVSVGVDARHPSFFLY 149
Query: 279 KTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
++G+Y + H + ++G+G E YWLV NS+ N+GE G R+
Sbjct: 150 RSGVYYEPSCTQNVNHGVLVVGYGDLNGKE-------YWLVKNSWGHNFGEEGYIRM 199
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 12/112 (10%)
Query: 390 LPANEETIMRE-IFRHGPVE-GSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEP 447
LP E +++E + GPV G + LY++G+Y + H + ++G+G
Sbjct: 117 LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLN 176
Query: 448 LGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQ-NECGIEADITAGLPKIG 498
E YWLV NS+ N+GE G R+ R + N CGI + P+IG
Sbjct: 177 GKE-------YWLVKNSWGHNFGEEGYIRMARNKGNHCGIAS--FPSYPEIG 219
>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S.
pdb|2R9M|A Chain A, Cathepsin S Complexed With Compound 15
pdb|2R9M|B Chain B, Cathepsin S Complexed With Compound 15
pdb|2R9N|A Chain A, Cathepsin S Complexed With Compound 26
pdb|2R9N|B Chain B, Cathepsin S Complexed With Compound 26
pdb|2R9O|A Chain A, Cathepsin S Complexed With Compound 8
pdb|2R9O|B Chain B, Cathepsin S Complexed With Compound 8
Length = 222
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 106/238 (44%), Gaps = 49/238 (20%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKD-CG 163
++W + E++ QGSCG+ WA AV A+ ++ + + + V LS+ +LV C + G
Sbjct: 5 VDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKL--KTGKLVSLSAQNLVDCSTEKYG 62
Query: 164 N-GCQGGFHGKAWKYWV-TTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQ-DNEPNT 220
N GC GGF A++Y + GI S +Y PY+ ++ CQ D++
Sbjct: 63 NKGCNGGFMTTAFQYIIDNKGIDSDASY-------PYKAMDQK--------CQYDSKYRA 107
Query: 221 PECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMRE-IFRHGPVE-GSMTIYADMILY 278
C + + LP E +++E + GPV G + LY
Sbjct: 108 ATCSKYTE-------------------LPYGREDVLKEAVANKGPVSVGVDARHPSFFLY 148
Query: 279 KTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIG 336
++G+Y + H + ++G+G E YWLV NS+ N+GE G R+
Sbjct: 149 RSGVYYEPSCTQNVNHGVLVVGYGDLNGKE-------YWLVKNSWGHNFGEEGYIRMA 199
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 10/102 (9%)
Query: 390 LPANEETIMRE-IFRHGPVE-GSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEP 447
LP E +++E + GPV G + LY++G+Y + H + ++G+G
Sbjct: 116 LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLN 175
Query: 448 LGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQ-NECGIEA 488
E YWLV NS+ N+GE G R+ R + N CGI +
Sbjct: 176 GKE-------YWLVKNSWGHNFGEEGYIRMARNKGNHCGIAS 210
>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NPZ|B Chain B, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NQC|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
Length = 217
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 106/237 (44%), Gaps = 49/237 (20%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKD-CG 163
++W + E++ QGSCG+ WA AV A+ ++ + + + V LS+ +LV C + G
Sbjct: 5 VDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKL--KTGKLVTLSAQNLVDCSTEKYG 62
Query: 164 N-GCQGGFHGKAWKYWV-TTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQ-DNEPNT 220
N GC GGF A++Y + GI S +Y PY+ ++ CQ D++
Sbjct: 63 NKGCNGGFMTTAFQYIIDNKGIDSDASY-------PYKAMDQK--------CQYDSKYRA 107
Query: 221 PECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMRE-IFRHGPVE-GSMTIYADMILY 278
C + + LP E +++E + GPV G + LY
Sbjct: 108 ATCSKYTE-------------------LPYGREDVLKEAVANKGPVSVGVDARHPSFFLY 148
Query: 279 KTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
++G+Y + H + ++G+G E YWLV NS+ N+GE G R+
Sbjct: 149 RSGVYYEPSCTQNVNHGVLVVGYGDLNGKE-------YWLVKNSWGHNFGEEGYIRM 198
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 10/102 (9%)
Query: 390 LPANEETIMRE-IFRHGPVE-GSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEP 447
LP E +++E + GPV G + LY++G+Y + H + ++G+G
Sbjct: 116 LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLN 175
Query: 448 LGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQ-NECGIEA 488
E YWLV NS+ N+GE G R+ R + N CGI +
Sbjct: 176 GKE-------YWLVKNSWGHNFGEEGYIRMARNKGNHCGIAS 210
>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H8B|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|2XU3|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU4|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU5|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ2|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ8|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ9|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJB|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJC|A Chain A, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 102/234 (43%), Gaps = 40/234 (17%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN 164
++W + +++QG CGS WA A A+ + + + R + LS +LV C GN
Sbjct: 5 VDWREKGYVTPVKNQGQCGSCWAFSATGALEGQ--MFRKTGRLISLSEQNLVDCSGPQGN 62
Query: 165 -GCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPEC 223
GC GG A++Y + G S++ PYE + SC+ N
Sbjct: 63 EGCNGGLMDYAFQY-----VQDNGGLDSEES-YPYE--------ATEESCKYN------- 101
Query: 224 IRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTI-YADMILYKTGI 282
P Y V+ +D F +P E+ +M+ + GP+ ++ + + YK GI
Sbjct: 102 -----PKYSVA--NDTGF----VDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGI 150
Query: 283 Y-KHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
Y + +H + ++G+G E S KYWLV NS+ WG G ++
Sbjct: 151 YFEPDCSSEDMDHGVLVVGYGFEST---ESDNNKYWLVKNSWGEEWGMGGYVKM 201
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 14/133 (10%)
Query: 368 KCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTI-YADMILYKTGIY- 425
K P Y V+ +D F +P E+ +M+ + GP+ ++ + + YK GIY
Sbjct: 99 KYNPKYSVA--NDTGF----VDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYF 152
Query: 426 KHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRG-QNEC 484
+ +H + ++G+G E S KYWLV NS+ WG G ++ + +N C
Sbjct: 153 EPDCSSEDMDHGVLVVGYGFEST---ESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHC 209
Query: 485 GIEADITAGLPKI 497
GI + A P +
Sbjct: 210 GIAS--AASYPTV 220
>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|B Chain B, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|C Chain C, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|D Chain D, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|2XU1|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|B Chain B, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|C Chain C, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|D Chain D, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 102/234 (43%), Gaps = 40/234 (17%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN 164
++W + +++QG CGS WA A A+ + + + R + LS +LV C GN
Sbjct: 5 VDWREKGYVTPVKNQGQCGSCWAFSATGALEGQ--MFRKTGRLISLSEQNLVDCSGPQGN 62
Query: 165 -GCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPEC 223
GC GG A++Y + G S++ PYE + SC+ N
Sbjct: 63 EGCNGGLMDYAFQY-----VQDNGGLDSEES-YPYE--------ATEESCKYN------- 101
Query: 224 IRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTI-YADMILYKTGI 282
P Y V+ +D F +P E+ +M+ + GP+ ++ + + YK GI
Sbjct: 102 -----PKYSVA--NDAGF----VDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGI 150
Query: 283 Y-KHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
Y + +H + ++G+G E S KYWLV NS+ WG G ++
Sbjct: 151 YFEPDCSSEDMDHGVLVVGYGFEST---ESDNNKYWLVKNSWGEEWGMGGYVKM 201
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 14/133 (10%)
Query: 368 KCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTI-YADMILYKTGIY- 425
K P Y V+ +D F +P E+ +M+ + GP+ ++ + + YK GIY
Sbjct: 99 KYNPKYSVA--NDAGF----VDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYF 152
Query: 426 KHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRG-QNEC 484
+ +H + ++G+G E S KYWLV NS+ WG G ++ + +N C
Sbjct: 153 EPDCSSEDMDHGVLVVGYGFEST---ESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHC 209
Query: 485 GIEADITAGLPKI 497
GI + A P +
Sbjct: 210 GIAS--AASYPTV 220
>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 97/236 (41%), Gaps = 49/236 (20%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN 164
++W + +I+DQG CGS WA + A+ IA+ + LS +LV C +
Sbjct: 5 VDWRSSGAVVDIKDQGQCGSCWAFSTIAAVEGINKIAT--GDLISLSEQELVDCGRTQNT 62
Query: 165 -GCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPEC 223
GC GGF +++ + G + + E N P
Sbjct: 63 RGCDGGFMTDGFQFIINNGGI------------------------------NTEANYPYT 92
Query: 224 IRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYA-DMILYKTGI 282
+ Q D+ E ++ ++P N E ++ + PV ++ + Y +GI
Sbjct: 93 AEEGQCNLDLQQEKYVSIDTYE-NVPYNNEWALQTAVAYQPVSVALEAAGYNFQHYSSGI 151
Query: 283 YKHVAGGPLG---EHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
+ GP G +HA+ I+G+G T + YW+V NS+ T WGE G RI
Sbjct: 152 FT----GPCGTAVDHAVTIVGYG-------TEGGIDYWIVKNSWGTTWGEEGYMRI 196
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 62/135 (45%), Gaps = 19/135 (14%)
Query: 359 EPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYA-DM 417
E N P + Q D+ E ++ ++P N E ++ + PV ++ +
Sbjct: 86 EANYPYTAEEGQCNLDLQQEKYVSIDTYE-NVPYNNEWALQTAVAYQPVSVALEAAGYNF 144
Query: 418 ILYKTGIYKHVAGGPLG---EHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGL 474
Y +GI+ GP G +HA+ I+G+G T + YW+V NS+ T WGE G
Sbjct: 145 QHYSSGIFT----GPCGTAVDHAVTIVGYG-------TEGGIDYWIVKNSWGTTWGEEGY 193
Query: 475 FRIVR---GQNECGI 486
RI R G +CGI
Sbjct: 194 MRIQRNVGGVGQCGI 208
>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera
pdb|2VHS|B Chain B, Cathsilicatein, A Chimera
pdb|2VHS|C Chain C, Cathsilicatein, A Chimera
pdb|2VHS|D Chain D, Cathsilicatein, A Chimera
Length = 217
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 100/234 (42%), Gaps = 43/234 (18%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN 164
++W + +++QG CG+ +A A A+ + + + R + LS +LV C GN
Sbjct: 5 VDWREKGYVTPVKNQGQCGASYAFSATGALEGQ--MFRKTGRLISLSEQNLVDCSGPQGN 62
Query: 165 -GCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPEC 223
GC GG A++Y G + + PYE + SC+ N
Sbjct: 63 EGCNGGLMDYAFQYVQDNGGLD------SEESYPYE--------ATEESCKYN------- 101
Query: 224 IRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTI-YADMILYKTGI 282
P Y V+ +D+ F +P E+ +M+ + GP+ ++ + + YK GI
Sbjct: 102 -----PKYSVA--NDVGF----VDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGI 150
Query: 283 YKHVAGGPLG-EHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
Y HA+ ++G+G S+ KYWLV NS+ WG G ++
Sbjct: 151 YFSSDCSSSSLNHAMLVVGYGF------ISNNQKYWLVKNSWGEEWGMGGYVKM 198
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 17/133 (12%)
Query: 368 KCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTI-YADMILYKTGIYK 426
K P Y V+ +D+ F +P E+ +M+ + GP+ ++ + + YK GIY
Sbjct: 99 KYNPKYSVA--NDVGF----VDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYF 152
Query: 427 HVAGGPLG-EHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRG-QNEC 484
HA+ ++G+G S+ KYWLV NS+ WG G ++ + +N C
Sbjct: 153 SSDCSSSSLNHAMLVVGYGF------ISNNQKYWLVKNSWGEEWGMGGYVKMAKDRRNHC 206
Query: 485 GIEADITAGLPKI 497
GI + A P +
Sbjct: 207 GIAS--AASYPTV 217
>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2
Length = 240
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 104/243 (42%), Gaps = 45/243 (18%)
Query: 99 EGFD-ARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVS 157
E FD A +W + ++DQ +CGS WA ++ ++ + I R + + LS +LV
Sbjct: 14 ENFDHAAYDWRLHSGVTPVKDQKNCGSAWAFSSIGSVESQYAI--RKNKLITLSEQELVD 71
Query: 158 CCKDCGNGCQGGFHGKAWKYWVTT-GIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDN 216
C GC GG A++ + GI G Y Y++ + + C
Sbjct: 72 CSFK-NYGCNGGLINNAFEDMIELGGICPDGDYP--------------YVSDAPNLCN-- 114
Query: 217 EPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRH-GPVEGSMTIYADM 275
I +C Y + + S+P N+ ++E R GP+ S+ + D
Sbjct: 115 -------IDRCTEKYGI---------KNYLSVPDNK---LKEALRFLGPISISVAVSDDF 155
Query: 276 ILYKTGIYKHVAGGPLGEHAIRIIGWG-QEPLGEGTSSVVK--YWLVANSFNTNWGENGL 332
YK GI+ G L HA+ ++G+G +E + T K Y+++ NS+ WGE G
Sbjct: 156 AFYKEGIFDGECGDQL-NHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGERGF 214
Query: 333 FRI 335
I
Sbjct: 215 INI 217
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 17/119 (14%)
Query: 389 SLPANEETIMREIFRH-GPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWG-QE 446
S+P N+ ++E R GP+ S+ + D YK GI+ G L HA+ ++G+G +E
Sbjct: 129 SVPDNK---LKEALRFLGPISISVAVSDDFAFYKEGIFDGECGDQL-NHAVMLVGFGMKE 184
Query: 447 PLGEGTSSVVK--YWLVANSFNTNWGENGLFRIVRGQNECGIEADITAGLPKIGLEIDS 503
+ T K Y+++ NS+ WGE G IE D + + K GL D+
Sbjct: 185 IVNPLTKKGEKHYYYIIKNSWGQQWGERGFIN---------IETDESGLMRKCGLGTDA 234
>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2
pdb|2GHU|A Chain A, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|B Chain B, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|C Chain C, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|D Chain D, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2OUL|A Chain A, The Structure Of Chagasin In Complex With A Cysteine
Protease Clarifies The Binding Mode And Evolution Of A
New Inhibitor Family
pdb|3BPF|A Chain A, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|B Chain B, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|C Chain C, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|D Chain D, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
Length = 241
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 104/243 (42%), Gaps = 45/243 (18%)
Query: 99 EGFD-ARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVS 157
E FD A +W + ++DQ +CGS WA ++ ++ + I R + + LS +LV
Sbjct: 15 ENFDHAAYDWRLHSGVTPVKDQKNCGSCWAFSSIGSVESQYAI--RKNKLITLSEQELVD 72
Query: 158 CCKDCGNGCQGGFHGKAWKYWVTT-GIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDN 216
C GC GG A++ + GI G Y Y++ + + C
Sbjct: 73 CSFK-NYGCNGGLINNAFEDMIELGGICPDGDYP--------------YVSDAPNLCN-- 115
Query: 217 EPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRH-GPVEGSMTIYADM 275
I +C Y + + S+P N+ ++E R GP+ S+ + D
Sbjct: 116 -------IDRCTEKYGI---------KNYLSVPDNK---LKEALRFLGPISISVAVSDDF 156
Query: 276 ILYKTGIYKHVAGGPLGEHAIRIIGWG-QEPLGEGTSSVVK--YWLVANSFNTNWGENGL 332
YK GI+ G L HA+ ++G+G +E + T K Y+++ NS+ WGE G
Sbjct: 157 AFYKEGIFDGECGDQL-NHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGERGF 215
Query: 333 FRI 335
I
Sbjct: 216 INI 218
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 17/119 (14%)
Query: 389 SLPANEETIMREIFRH-GPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWG-QE 446
S+P N+ ++E R GP+ S+ + D YK GI+ G L HA+ ++G+G +E
Sbjct: 130 SVPDNK---LKEALRFLGPISISVAVSDDFAFYKEGIFDGECGDQL-NHAVMLVGFGMKE 185
Query: 447 PLGEGTSSVVK--YWLVANSFNTNWGENGLFRIVRGQNECGIEADITAGLPKIGLEIDS 503
+ T K Y+++ NS+ WGE G IE D + + K GL D+
Sbjct: 186 IVNPLTKKGEKHYYYIIKNSWGQQWGERGFIN---------IETDESGLMRKCGLGTDA 235
>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
pdb|3QJ3|B Chain B, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
Length = 331
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 112/285 (39%), Gaps = 50/285 (17%)
Query: 57 NALSKLTLSELEMRM-GVHPDSKLPQNRLPLLVQLSDPLEELPEGFDARINWPYCPTIQE 115
N + +T E++ G+ + L +N +P+ + L + A +W +
Sbjct: 72 NLFTDMTPEEMKAYTHGLIMPADLHKNGIPIKTREDLGLNASVR-YPASFDWRDQGMVSP 130
Query: 116 IRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKAW 175
+++QGSCGS WA + A+ ++ IA+ +S LV C + GC GG+ A+
Sbjct: 131 VKNQGSCGSSWAFSSTGAIESQMKIANGAGYDSSVSEQQLVDCVPNA-LGCSGGWMNDAF 189
Query: 176 KYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSY 235
Y G + +G PYE+ + +C + P + GY
Sbjct: 190 TYVAQNGGI------DSEGAYPYEM--------ADGNCHYD----PNQVAARLSGY---- 227
Query: 236 EDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGE-- 293
Y +E + + GPV + Y G+Y + P E
Sbjct: 228 ---------VYLSGPDENMLADMVATKGPVAVAFDADDPFGSYSGGVYYN----PTCETN 274
Query: 294 ---HAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
HA+ I+G+G E + YWLV NS+ WG +G F+I
Sbjct: 275 KFTHAVLIVGYGNE-------NGQDYWLVKNSWGDGWGLDGYFKI 312
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 10/63 (15%)
Query: 436 HAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVR-GQNECGIEADITAGL 494
HA+ I+G+G E + YWLV NS+ WG +G F+I R N CGI A +
Sbjct: 278 HAVLIVGYGNE-------NGQDYWLVKNSWGDGWGLDGYFKIARNANNHCGIAG--VASV 328
Query: 495 PKI 497
P +
Sbjct: 329 PTL 331
>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|B Chain B, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|C Chain C, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|D Chain D, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
Length = 262
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 100/235 (42%), Gaps = 44/235 (18%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN 164
++W + ++DQG CGS WA V ++ I R V LS +L+ C +
Sbjct: 8 VDWRQKGAVTGVKDQGKCGSCWAFSTVVSVEGINAI--RTGSLVSLSEQELIDCDTADND 65
Query: 165 GCQGGFHGKAWKYWVTT-GIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPEC 223
GCQGG A++Y G+++ Y PY R G+ + + + N+P
Sbjct: 66 GCQGGLMDNAFEYIKNNGGLITEAAY-------PY-----RAARGTCNVARAAQ-NSPVV 112
Query: 224 IRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYAD---MILYKT 280
+ + ++D +PAN E + + PV S+ + A + Y
Sbjct: 113 V------HIDGHQD----------VPANSEEDLARAVANQPV--SVAVEASGKAFMFYSE 154
Query: 281 GIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
G++ G L +H + ++G+G G+ YW V NS+ +WGE G R+
Sbjct: 155 GVFTGECGTEL-DHGVAVVGYGVAEDGKA------YWTVKNSWGPSWGEQGYIRV 202
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 12/99 (12%)
Query: 390 LPANEETIMREIFRHGPVEGSMTIYAD---MILYKTGIYKHVAGGPLGEHAIRIIGWGQE 446
+PAN E + + PV S+ + A + Y G++ G L +H + ++G+G
Sbjct: 121 VPANSEEDLARAVANQPV--SVAVEASGKAFMFYSEGVFTGECGTEL-DHGVAVVGYGVA 177
Query: 447 PLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECG 485
G+ YW V NS+ +WGE G R+ + G
Sbjct: 178 EDGKA------YWTVKNSWGPSWGEQGYIRVEKDSGASG 210
>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin
At 1.7 Angstroms Resolution By Fast Fourier
Least-Squares Methods
Length = 220
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 97/237 (40%), Gaps = 51/237 (21%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN 164
++W + +I+ QG CG WA A+ + I S + LS +L+ C +
Sbjct: 5 VDWRSAGAVVDIKSQGECGGXWAFSAIATVEGINKITS--GSLISLSEQELIDCGRTQNT 62
Query: 165 -GCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPEC 223
GC GG+ +++ + G ++ ++N P T +
Sbjct: 63 RGCDGGYITDGFQFIINDGGIN---------------------------TEENYPYTAQ- 94
Query: 224 IRKCQPGYDVSYEDDLNFGRIAY-SLPANEETIMREIFRHGPVEGSMTIYADMI-LYKTG 281
DV+ +D Y ++P N E ++ + PV ++ D Y +G
Sbjct: 95 ----DGDCDVALQDQKYVTIDTYENVPYNNEWALQTAVTYQPVSVALDAAGDAFKQYASG 150
Query: 282 IYKHVAGGPLG---EHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
I+ GP G +HAI I+G+G E V YW+V NS++T WGE G RI
Sbjct: 151 IFT----GPCGTAVDHAIVIVGYGTE-------GGVDYWIVKNSWDTTWGEEGYMRI 196
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 53/105 (50%), Gaps = 18/105 (17%)
Query: 389 SLPANEETIMREIFRHGPVEGSMTIYADMI-LYKTGIYKHVAGGPLG---EHAIRIIGWG 444
++P N E ++ + PV ++ D Y +GI+ GP G +HAI I+G+G
Sbjct: 115 NVPYNNEWALQTAVTYQPVSVALDAAGDAFKQYASGIFT----GPCGTAVDHAIVIVGYG 170
Query: 445 QEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVR---GQNECGI 486
E V YW+V NS++T WGE G RI+R G CGI
Sbjct: 171 TE-------GGVDYWIVKNSWDTTWGEEGYMRILRNVGGAGTCGI 208
>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|B Chain B, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|C Chain C, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|D Chain D, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
Length = 221
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 103/242 (42%), Gaps = 50/242 (20%)
Query: 95 EELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDD 154
++LP+ D R N P +++QG CGS WA V A+ I + + LS
Sbjct: 1 DDLPDSIDWRENGAVVP----VKNQGGCGSCWAFSTVAAVEGINQIVT--GDLISLSEQQ 54
Query: 155 LVSCCKDCGNGCQGGFHGKAWKYWVTT-GIVSGGTYASKQGCRPYEIPCERYMNGSHSSC 213
LV C +GC+GG+ A+++ V GI S TY R + C +N S
Sbjct: 55 LVDCTT-ANHGCRGGWMNPAFQFIVNNGGINSEETYPY----RGQDGICNSTVNAPVVSI 109
Query: 214 QDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYA 273
SYE+ +P++ E +++ + PV +M
Sbjct: 110 D-------------------SYEN----------VPSHNEQSLQKAVANQPVSVTMDAAG 140
Query: 274 -DMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGL 332
D LY++GI+ + HA+ ++G+G E + +W+V NS+ NWGE+G
Sbjct: 141 RDFQLYRSGIFTG-SCNISANHALTVVGYGTENDKD-------FWIVKNSWGKNWGESGY 192
Query: 333 FR 334
R
Sbjct: 193 IR 194
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 13/103 (12%)
Query: 389 SLPANEETIMREIFRHGPVEGSMTIYA-DMILYKTGIYKHVAGGPLGEHAIRIIGWGQEP 447
++P++ E +++ + PV +M D LY++GI+ + HA+ ++G+G E
Sbjct: 114 NVPSHNEQSLQKAVANQPVSVTMDAAGRDFQLYRSGIFTG-SCNISANHALTVVGYGTEN 172
Query: 448 LGEGTSSVVKYWLVANSFNTNWGENGLFRIVRG----QNECGI 486
+ +W+V NS+ NWGE+G R R +CGI
Sbjct: 173 DKD-------FWIVKNSWGKNWGESGYIRAERNIENPDGKCGI 208
>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3TNX|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3USV|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
pdb|3USV|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
Length = 363
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 100/246 (40%), Gaps = 50/246 (20%)
Query: 90 LSDPLEELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVR 149
L+D +PE ++W + +++QGSCGS WA AV + + I R
Sbjct: 145 LNDGDVNIPE----YVDWRQKGAVTPVKNQGSCGSAWAFSAVSTIESIIKI--RTGNLNE 198
Query: 150 LSSDDLVSCCKDCGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGS 209
S +L+ C + GC GG+ A + GI TY +G + Y C G
Sbjct: 199 YSEQELLDCDRRS-YGCNGGYPWSALQLVAQYGIHYRNTYPY-EGVQRY---CRSREKGP 253
Query: 210 HSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSM 269
+++ D +R+ QP N G + YS+ +++ E
Sbjct: 254 YAAKTDG-------VRQVQP---------YNEGALLYSIANQPVSVVLE----------- 286
Query: 270 TIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGE 329
D LY+ GI+ G + +HA+ +G+G Y L+ NS+ T WGE
Sbjct: 287 AAGKDFQLYRGGIFVGPCGNKV-DHAVAAVGYGP-----------NYILIRNSWGTGWGE 334
Query: 330 NGLFRI 335
NG RI
Sbjct: 335 NGYIRI 340
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 18/93 (19%)
Query: 391 PANEETIMREIFRHGPVEGSMTIYA---DMILYKTGIYKHVAGGPLGEHAIRIIGWGQEP 447
P NE ++ I PV S+ + A D LY+ GI+ G + +HA+ +G+G
Sbjct: 266 PYNEGALLYSIANQ-PV--SVVLEAAGKDFQLYRGGIFVGPCGNKV-DHAVAAVGYGP-- 319
Query: 448 LGEGTSSVVKYWLVANSFNTNWGENGLFRIVRG 480
Y L+ NS+ T WGENG RI RG
Sbjct: 320 ---------NYILIRNSWGTGWGENGYIRIKRG 343
>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+
Length = 218
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/235 (22%), Positives = 94/235 (40%), Gaps = 43/235 (18%)
Query: 103 ARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDC 162
+ ++W + +I+ QG CG WA A+ + I + + LS +L+ C +
Sbjct: 3 SYVDWRSAGAVVDIKSQGECGGCWAFSAIATVEGINKIVT--GVLISLSEQELIDCGRTQ 60
Query: 163 GN-GCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTP 221
GC GG+ +++ + G + + E N P
Sbjct: 61 NTRGCNGGYITDGFQFIINNGGI------------------------------NTEENYP 90
Query: 222 ECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMI-LYKT 280
+ + D+ E + ++P N E ++ + PV ++ D Y +
Sbjct: 91 YTAQDGECNVDLQNEKYVTIDTYE-NVPYNNEWALQTAVTYQPVSVALDAAGDAFKQYSS 149
Query: 281 GIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
GI+ G + +HA+ I+G+G E + YW+V NS++T WGE G RI
Sbjct: 150 GIFTGPCGTAI-DHAVTIVGYGTE-------GGIDYWIVKNSWDTTWGEEGYMRI 196
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 12/102 (11%)
Query: 389 SLPANEETIMREIFRHGPVEGSMTIYADMI-LYKTGIYKHVAGGPLGEHAIRIIGWGQEP 447
++P N E ++ + PV ++ D Y +GI+ G + +HA+ I+G+G E
Sbjct: 115 NVPYNNEWALQTAVTYQPVSVALDAAGDAFKQYSSGIFTGPCGTAI-DHAVTIVGYGTE- 172
Query: 448 LGEGTSSVVKYWLVANSFNTNWGENGLFRIVR---GQNECGI 486
+ YW+V NS++T WGE G RI+R G CGI
Sbjct: 173 ------GGIDYWIVKNSWDTTWGEEGYMRILRNVGGAGTCGI 208
>pdb|1K3B|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJG|B Chain B, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
pdb|2DJF|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
Length = 164
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 87/195 (44%), Gaps = 39/195 (20%)
Query: 97 LPEGFDAR----INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSS 152
LP +D R IN+ + +R+Q SCGS ++ ++ + R+ I + + LS
Sbjct: 1 LPTSWDWRNVHGINF-----VSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSP 55
Query: 153 DDLVSCCKDCGNGCQGGF-HGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHS 211
++VSC + GC+GGF + A KY G+V ++ C PY G+ S
Sbjct: 56 QEVVSCSQY-AQGCEGGFPYLIAGKYAQDFGLV-------EEACFPY--------TGTDS 99
Query: 212 SCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTI 271
C+ E +C R Y + ++ Y NE + E+ HGP+ + +
Sbjct: 100 PCKMKE----DCFRY--------YSSEYHYVGGFYG-GCNEALMKLELVHHGPMAVAFEV 146
Query: 272 YADMILYKTGIYKHV 286
Y D + YK GIY H
Sbjct: 147 YDDFLHYKKGIYHHT 161
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 24/112 (21%)
Query: 317 WLVANSFNTNWGENGLFRIGCRPYEIPCERYMNGSRSSCQANEPNTPECIRKCQPGYDVS 376
+L+A + ++G L C PY G+ S C+ E +C R
Sbjct: 74 YLIAGKYAQDFG---LVEEACFPY--------TGTDSPCKMKE----DCFRY-------- 110
Query: 377 YEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHV 428
Y + ++ Y NE + E+ HGP+ + +Y D + YK GIY H
Sbjct: 111 YSSEYHYVGGFYG-GCNEALMKLELVHHGPMAVAFEVYDDFLHYKKGIYHHT 161
>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 224
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 98/240 (40%), Gaps = 48/240 (20%)
Query: 97 LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLV 156
LP A ++W + ++DQ CGS WA A+ C ++ + V LS +L+
Sbjct: 3 LPSELPAGVDWRSRGCVTPVKDQRDCGSCWAFSTTGALEGAHC--AKTGKLVSLSEQELM 60
Query: 157 SCCKDCGN-GCQGGFHGKAWKYWVTT-GIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQ 214
C + GN C GG A++Y + + GI S Y PY +
Sbjct: 61 DCSRAEGNQSCSGGEMNDAFQYVLDSGGICSEDAY-------PYLA-------------R 100
Query: 215 DNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYAD 274
D E C + + + ++D +P E M+ PV S+ I AD
Sbjct: 101 DEECRAQSCEKVVKI---LGFKD----------VPRRSEAAMKAALAKSPV--SIAIEAD 145
Query: 275 MI---LYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENG 331
+ Y G++ G L +H + ++G+G + S +W++ NS+ T WG +G
Sbjct: 146 QMPFQFYHEGVFDASCGTDL-DHGVLLVGYGTD-----KESKKDFWIMKNSWGTGWGRDG 199
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 14/108 (12%)
Query: 390 LPANEETIMREIFRHGPVEGSMTIYADMI---LYKTGIYKHVAGGPLGEHAIRIIGWGQE 446
+P E M+ PV S+ I AD + Y G++ G L +H + ++G+G +
Sbjct: 121 VPRRSEAAMKAALAKSPV--SIAIEADQMPFQFYHEGVFDASCGTDL-DHGVLLVGYGTD 177
Query: 447 PLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNE---CGIEADIT 491
S +W++ NS+ T WG +G + + E CG+ D +
Sbjct: 178 -----KESKKDFWIMKNSWGTGWGRDGYMYMAMHKGEEGQCGLLLDAS 220
>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray
Crystal Structure Of A Plant Cysteine Protease Ervatamin
B: Insight Into The Structural Basis Of Its Stability
And Substrate Specificity
Length = 215
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 97/234 (41%), Gaps = 57/234 (24%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN 164
++W + I++Q CGS WA AV A+ I R + + LS +LV C +
Sbjct: 5 VDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKI--RTGQLISLSEQELVDC-DTASH 61
Query: 165 GCQGGFHGKAWKYWVTTGIVSGGT---YASKQG-CRPYEIPCERYMNGSHSSCQDNEPNT 220
GC GG+ A++Y +T G + Y++ QG C+PY + +NG ++NE
Sbjct: 62 GCNGGWMNNAFQYIITNGGIDTQQNYPYSAVQGSCKPYRLRVVS-INGFQRVTRNNESAL 120
Query: 221 PECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKT 280
+ QP V+ E A P F+H Y +
Sbjct: 121 QSAVAS-QP-VSVTVE--------AAGAP----------FQH---------------YSS 145
Query: 281 GIYKHVAGGPLG---EHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENG 331
GI+ GP G H + I+G+G T S YW+V NS+ NWG G
Sbjct: 146 GIFT----GPCGTAQNHGVVIVGYG-------TQSGKNYWIVRNSWGQNWGNQG 188
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 19/93 (20%)
Query: 393 NEETIMREIFRHGPVEGSMTIYAD---MILYKTGIYKHVAGGPLG---EHAIRIIGWGQE 446
N E+ ++ PV S+T+ A Y +GI+ GP G H + I+G+G
Sbjct: 115 NNESALQSAVASQPV--SVTVEAAGAPFQHYSSGIFT----GPCGTAQNHGVVIVGYG-- 166
Query: 447 PLGEGTSSVVKYWLVANSFNTNWGENGLFRIVR 479
T S YW+V NS+ NWG G + R
Sbjct: 167 -----TQSGKNYWIVRNSWGQNWGNQGYIWMER 194
>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution
Length = 218
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 100/238 (42%), Gaps = 48/238 (20%)
Query: 101 FDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCK 160
+ I+W + +++QG+CGS WA + + I + + LS +LV C K
Sbjct: 1 YPQSIDWRAKGAVTPVKNQGACGSXWAFSTIATVEGINKIVT--GNLLELSEQELVDCDK 58
Query: 161 DCGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNT 220
GC+GG+ + +Y G+ + Y PY+ ++Y
Sbjct: 59 HS-YGCKGGYQTTSLQYVANNGVHTSKVY-------PYQ--AKQY--------------- 93
Query: 221 PECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYAD---MIL 277
+C +PG V + R+ P+N ET + P+ S+ + A L
Sbjct: 94 -KCRATDKPGPKVKI---TGYKRV----PSNXETSFLGALANQPL--SVLVEAGGKPFQL 143
Query: 278 YKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
YK+G++ G L +HA+ +G+G TS Y ++ NS+ NWGE G R+
Sbjct: 144 YKSGVFDGPCGTKL-DHAVTAVGYG-------TSDGKNYIIIKNSWGPNWGEKGYMRL 193
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 17/104 (16%)
Query: 390 LPANEETIMREIFRHGPVEGSMTIYAD---MILYKTGIYKHVAGGPLGEHAIRIIGWGQE 446
+P+N ET + P+ S+ + A LYK+G++ G L +HA+ +G+G
Sbjct: 113 VPSNXETSFLGALANQPL--SVLVEAGGKPFQLYKSGVFDGPCGTKL-DHAVTAVGYG-- 167
Query: 447 PLGEGTSSVVKYWLVANSFNTNWGENGLFRIVR----GQNECGI 486
TS Y ++ NS+ NWGE G R+ R Q CG+
Sbjct: 168 -----TSDGKNYIIIKNSWGPNWGEKGYMRLKRQSGNSQGTCGV 206
>pdb|3BPM|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BPM|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BWK|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|C Chain C, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|D Chain D, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
Length = 243
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 99/234 (42%), Gaps = 42/234 (17%)
Query: 106 NWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNG 165
+W + ++DQ CGS WA +V ++ + I R K S +LV C NG
Sbjct: 25 DWRLHGGVTPVKDQALCGSCWAFSSVGSVESQYAI--RKKALFLFSEQELVDCSVK-NNG 81
Query: 166 CQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIR 225
C GG+ A+ + G + C + P Y++ +C ++
Sbjct: 82 CYGGYITNAFDDMIDLGGL----------CSQDDYP---YVSNLPETCN---------LK 119
Query: 226 KCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRH-GPVEGSMTIYADMILYKTGIYK 284
+C Y + + S+P ++ +E R+ GP+ S+ D Y+ G Y
Sbjct: 120 RCNERYTI---------KSYVSIPDDK---FKEALRYLGPISISIAASDDFAFYRGGFYD 167
Query: 285 HVAGGPLGEHAIRIIGWGQEPL-GEGTSSVVK--YWLVANSFNTNWGENGLFRI 335
G HA+ ++G+G + + E T + K Y+++ NS+ ++WGE G +
Sbjct: 168 GECGAA-PNHAVILVGYGMKDIYNEDTGRMEKFYYYIIKNSWGSDWGEGGYINL 220
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 8/98 (8%)
Query: 389 SLPANEETIMREIFRH-GPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEP 447
S+P ++ +E R+ GP+ S+ D Y+ G Y G HA+ ++G+G +
Sbjct: 132 SIPDDK---FKEALRYLGPISISIAASDDFAFYRGGFYDGECGAA-PNHAVILVGYGMKD 187
Query: 448 L-GEGTSSVVK--YWLVANSFNTNWGENGLFRIVRGQN 482
+ E T + K Y+++ NS+ ++WGE G + +N
Sbjct: 188 IYNEDTGRMEKFYYYIIKNSWGSDWGEGGYINLETDEN 225
>pdb|1K3B|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJF|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
pdb|2DJG|C Chain C, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
Length = 69
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 40/63 (63%), Gaps = 5/63 (7%)
Query: 433 LGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITA 492
L HA+ ++G+G + ++S + YW+V NS+ T WGENG FRI RG +EC IE+ A
Sbjct: 8 LTNHAVLLVGYGTD-----SASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVA 62
Query: 493 GLP 495
P
Sbjct: 63 ATP 65
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%), Gaps = 5/45 (11%)
Query: 291 LGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
L HA+ ++G+G + ++S + YW+V NS+ T WGENG FRI
Sbjct: 8 LTNHAVLLVGYGTD-----SASGMDYWIVKNSWGTGWGENGYFRI 47
>pdb|1AIM|A Chain A, Cruzain Inhibited By
Benzoyl-Tyrosine-Alanine-Fluoromethylketone
Length = 215
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 95/233 (40%), Gaps = 39/233 (16%)
Query: 103 ARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDC 162
A ++W + ++DQG CGS WA A+ + + +A G LS LVSC K
Sbjct: 3 AAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLA--GHPLTNLSEQMLVSCDKT- 59
Query: 163 GNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPE 222
+GC GG A+++ V +G Y PY E +P
Sbjct: 60 DSGCSGGLMNNAFEWIVQEN--NGAVYTEDS--YPY---------------ASGEGISPP 100
Query: 223 CIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGI 282
C G+ V G + LP +E I + +GPV ++ + M Y G+
Sbjct: 101 CTTS---GHTVGATIT---GHV--ELPQDEAQIAAWLAVNGPVAVAVDASSWMT-YTGGV 151
Query: 283 YKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
L +H + ++G+ S+ V YW++ NS+ T WGE G RI
Sbjct: 152 MTSCVSEAL-DHGVLLVGYND-------SAAVPYWIIKNSWTTQWGEEGYIRI 196
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 9/105 (8%)
Query: 390 LPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLG 449
LP +E I + +GPV ++ + M Y G+ L +H + ++G+
Sbjct: 118 LPQDEAQIAAWLAVNGPVAVAVDASSWMT-YTGGVMTSCVSEAL-DHGVLLVGYND---- 171
Query: 450 EGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITAGL 494
S+ V YW++ NS+ T WGE G RI +G N+C ++ + ++ +
Sbjct: 172 ---SAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAV 213
>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed
With Fragments Of The Trypanosoma Brucei Cysteine
Protease Inhibitor Icp
Length = 212
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 93/235 (39%), Gaps = 54/235 (22%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN 164
++W + +++QGSCGS WA AV + + I R + S +L+ C +
Sbjct: 5 VDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKI--RTGNLNQYSEQELLDCDRRS-Y 61
Query: 165 GCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPN----T 220
GC GG+ A + GI TY PYE G C+ E
Sbjct: 62 GCNGGYPWSALQLVAQYGIHYRNTY-------PYE--------GVQRYCRSREKGPYAAK 106
Query: 221 PECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKT 280
+ +R+ QP N G + YS+ +++ E D LY+
Sbjct: 107 TDGVRQVQP---------YNEGALLYSIANQPVSVVLEAAGK-----------DFQLYRG 146
Query: 281 GIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
GI+ G + +HA+ +G+G Y L+ NS+ T WGENG RI
Sbjct: 147 GIFVGPCGNKV-DHAVAAVGYGPN-----------YILIKNSWGTGWGENGYIRI 189
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 18/93 (19%)
Query: 391 PANEETIMREIFRHGPVEGSMTIYA---DMILYKTGIYKHVAGGPLGEHAIRIIGWGQEP 447
P NE ++ I PV S+ + A D LY+ GI+ G + +HA+ +G+G
Sbjct: 115 PYNEGALLYSIANQ-PV--SVVLEAAGKDFQLYRGGIFVGPCGNKV-DHAVAAVGYGPN- 169
Query: 448 LGEGTSSVVKYWLVANSFNTNWGENGLFRIVRG 480
Y L+ NS+ T WGENG RI RG
Sbjct: 170 ----------YILIKNSWGTGWGENGYIRIKRG 192
>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq
pdb|1F29|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|B Chain B, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|C Chain C, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F2A|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (Ii)
pdb|1F2B|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Iii)
pdb|1F2C|A Chain A, Crystal Structure Analysis Of Cryzain Bound To Vinyl
Sulfone Derived Inhibitor (Iv)
pdb|1ME3|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain Non-
Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(Ii)
pdb|1ME4|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain
Non-Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(I)
pdb|1EWL|A Chain A, Crystal Structure Of Cruzain Bound To Wrr-99
pdb|1EWM|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-112
pdb|1EWO|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-204
pdb|1U9Q|X Chain X, Crystal Structure Of Cruzain Bound To An Alpha-Ketoester
pdb|2AIM|A Chain A, Cruzain Inhibited With
Benzoyl-Arginine-Alanine-Fluoromethylketone
pdb|2OZ2|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|2OZ2|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|3I06|A Chain A, Crystal Structure Of Cruzain Covalently Bound To A Purine
Nitrile
pdb|3KKU|A Chain A, Cruzain In Complex With A Non-Covalent Ligand
pdb|3LXS|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
pdb|3LXS|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
Length = 215
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 95/233 (40%), Gaps = 39/233 (16%)
Query: 103 ARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDC 162
A ++W + ++DQG CGS WA A+ + + +A G LS LVSC K
Sbjct: 3 AAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLA--GHPLTNLSEQMLVSCDKT- 59
Query: 163 GNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPE 222
+GC GG A+++ V +G Y PY E +P
Sbjct: 60 DSGCSGGLMNNAFEWIVQEN--NGAVYTEDS--YPYA---------------SGEGISPP 100
Query: 223 CIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGI 282
C G+ V G + LP +E I + +GPV ++ + M Y G+
Sbjct: 101 CTTS---GHTVGATIT---GHV--ELPQDEAQIAAWLAVNGPVAVAVDASSWMT-YTGGV 151
Query: 283 YKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
L +H + ++G+ S+ V YW++ NS+ T WGE G RI
Sbjct: 152 MTSCVSEQL-DHGVLLVGYND-------SAAVPYWIIKNSWTTQWGEEGYIRI 196
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 9/105 (8%)
Query: 390 LPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLG 449
LP +E I + +GPV ++ + M Y G+ L +H + ++G+
Sbjct: 118 LPQDEAQIAAWLAVNGPVAVAVDASSWMT-YTGGVMTSCVSEQL-DHGVLLVGYND---- 171
Query: 450 EGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITAGL 494
S+ V YW++ NS+ T WGE G RI +G N+C ++ + ++ +
Sbjct: 172 ---SAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAV 213
>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain
pdb|3IMA|C Chain C, Complex Strcuture Of Tarocystatin And Papain
pdb|3LFY|A Chain A, Ctd Of Tarocystatin In Complex With Papain
pdb|3LFY|C Chain C, Ctd Of Tarocystatin In Complex With Papain
Length = 212
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 92/235 (39%), Gaps = 54/235 (22%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN 164
++W + +++QGSCGS WA AV + + I R S +L+ C +
Sbjct: 5 VDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKI--RTGNLNEYSEQELLDCDRRS-Y 61
Query: 165 GCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPN----T 220
GC GG+ A + GI TY PYE G C+ E
Sbjct: 62 GCNGGYPWSALQLVAQYGIHYRNTY-------PYE--------GVQRYCRSREKGPYAAK 106
Query: 221 PECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKT 280
+ +R+ QP N G + YS+ +++ E D LY+
Sbjct: 107 TDGVRQVQP---------YNEGALLYSIANQPVSVVLEAAGK-----------DFQLYRG 146
Query: 281 GIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
GI+ G + +HA+ +G+G Y L+ NS+ T WGENG RI
Sbjct: 147 GIFVGPCGNKV-DHAVAAVGYGPN-----------YILIKNSWGTGWGENGYIRI 189
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 18/93 (19%)
Query: 391 PANEETIMREIFRHGPVEGSMTIYA---DMILYKTGIYKHVAGGPLGEHAIRIIGWGQEP 447
P NE ++ I PV S+ + A D LY+ GI+ G + +HA+ +G+G
Sbjct: 115 PYNEGALLYSIANQ-PV--SVVLEAAGKDFQLYRGGIFVGPCGNKV-DHAVAAVGYGPN- 169
Query: 448 LGEGTSSVVKYWLVANSFNTNWGENGLFRIVRG 480
Y L+ NS+ T WGENG RI RG
Sbjct: 170 ----------YILIKNSWGTGWGENGYIRIKRG 192
>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen
Der P 1 In Its Pro Form At 1.61 A Resolution
Length = 312
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 81/337 (24%), Positives = 123/337 (36%), Gaps = 79/337 (23%)
Query: 13 LKDLDLSQSSRNHSNGVFCDLSKAFDRVDHSILLPKLPFYGAEKNALSKLTLSELEMRMG 72
+K + + + N S F D A S+ + G N LS L+L E + R
Sbjct: 5 IKTFEEYKKAFNKSYATFEDEEAARKNFLESVKYVQSN--GGAINHLSDLSLDEFKNR-- 60
Query: 73 VHPDSKLPQNRLPLLVQLSDPLEELPEGFD---------------ARINWPYCPTIQEIR 117
+ ++ E L FD A I+ T+ IR
Sbjct: 61 --------------FLMSAEAFEHLKTQFDLNAETNACSINGNAPAEIDLRQMRTVTPIR 106
Query: 118 DQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKAWKY 177
QG CGS WA V A ++ +A R + + L+ +LV C +GC G + +Y
Sbjct: 107 MQGGCGSAWAFSGV-AATESAYLAYRDQS-LDLAEQELVDCASQ--HGCHGDTIPRGIEY 162
Query: 178 WVTTGIVSGGTY---ASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVS 234
G+V Y A +Q CR +R+ G + CQ PN + +
Sbjct: 163 IQHNGVVQESYYRYVAREQSCR--RPNAQRF--GISNYCQIYPPNANKIREALAQTHSA- 217
Query: 235 YEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEH 294
IA + + + FRH +G I D G H
Sbjct: 218 ---------IAVIIGIKD----LDAFRH--YDGRTIIQRD------------NGYQPNYH 250
Query: 295 AIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENG 331
A+ I+G+ + V YW+V NS++TNWG+NG
Sbjct: 251 AVNIVGY-------SNAQGVDYWIVRNSWDTNWGDNG 280
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 7/38 (18%)
Query: 436 HAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENG 473
HA+ I+G+ + V YW+V NS++TNWG+NG
Sbjct: 250 HAVNIVGYS-------NAQGVDYWIVRNSWDTNWGDNG 280
>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of
Recombinant Human Stefin B In Complex With The Cysteine
Proteinase Papain: A Novel Type Of Proteinase Inhibitor
Interaction
pdb|9PAP|A Chain A, Structure Of Papain Refined At 1.65 Angstroms Resolution
Length = 212
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 93/235 (39%), Gaps = 54/235 (22%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN 164
++W + +++QGSCGS WA AV + + I R + S +L+ C +
Sbjct: 5 VDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKI--RTGNLNQYSEQELLDCDRRS-Y 61
Query: 165 GCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPN----T 220
GC GG+ A + GI TY PYE G C+ E
Sbjct: 62 GCNGGYPWSALQLVAQYGIHYRNTY-------PYE--------GVQRYCRSREKGPYAAK 106
Query: 221 PECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKT 280
+ +R+ QP N G + YS+ +++ + D LY+
Sbjct: 107 TDGVRQVQP---------YNQGALLYSIANQPVSVVLQAAGK-----------DFQLYRG 146
Query: 281 GIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
GI+ G + +HA+ +G+G Y L+ NS+ T WGENG RI
Sbjct: 147 GIFVGPCGNKV-DHAVAAVGYGPN-----------YILIKNSWGTGWGENGYIRI 189
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 18/93 (19%)
Query: 391 PANEETIMREIFRHGPVEGSMTIYA---DMILYKTGIYKHVAGGPLGEHAIRIIGWGQEP 447
P N+ ++ I PV S+ + A D LY+ GI+ G + +HA+ +G+G
Sbjct: 115 PYNQGALLYSIANQ-PV--SVVLQAAGKDFQLYRGGIFVGPCGNKV-DHAVAAVGYGPN- 169
Query: 448 LGEGTSSVVKYWLVANSFNTNWGENGLFRIVRG 480
Y L+ NS+ T WGENG RI RG
Sbjct: 170 ----------YILIKNSWGTGWGENGYIRIKRG 192
>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine
Protease Of T. Brucei Rhodesiense, Bound To Inhibitor
K777
pdb|2P86|A Chain A, The High Resolution Crystal Structure Of Rohedsain, The
Major Cathepsin L Protease From T. Brucei Rhodesiense,
Bound To Inhibitor K11002
Length = 215
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 90/233 (38%), Gaps = 39/233 (16%)
Query: 103 ARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDC 162
A ++W + ++DQG CGS WA + + + +A G V LS LVSC
Sbjct: 3 AAVDWREKGAVTPVKDQGQCGSCWAFSTIGNIEGQWQVA--GNPLVSLSEQMLVSC-DTI 59
Query: 163 GNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPE 222
GC GG A+ + V S G + PY NG CQ N
Sbjct: 60 DFGCGGGLMDNAFNWIVN----SNGGNVFTEASYPY-----VSGNGEQPQCQMNGHEIGA 110
Query: 223 CIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGI 282
I LP +E+ I + +GP+ ++ + M Y GI
Sbjct: 111 AITD------------------HVDLPQDEDAIAAYLAENGPLAIAVDATSFMD-YNGGI 151
Query: 283 YKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
L +H + ++G+ +S YW++ NS++ WGE+G RI
Sbjct: 152 LTSCTSEQL-DHGVLLVGYND-------ASNPPYWIIKNSWSNMWGEDGYIRI 196
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 53/105 (50%), Gaps = 9/105 (8%)
Query: 390 LPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLG 449
LP +E+ I + +GP+ ++ + M Y GI L +H + ++G+
Sbjct: 118 LPQDEDAIAAYLAENGPLAIAVDATSFMD-YNGGILTSCTSEQL-DHGVLLVGYND---- 171
Query: 450 EGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITAGL 494
+S YW++ NS++ WGE+G RI +G N+C + +++ +
Sbjct: 172 ---ASNPPYWIIKNSWSNMWGEDGYIRIEKGTNQCLMNQAVSSAV 213
>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex
pdb|1KHQ|A Chain A, Orthorhombic Form Of PapainZLFG-Dam Covalent Complex
pdb|1PPN|A Chain A, Structure Of Monoclinic Papain At 1.60 Angstroms
Resolution
pdb|3E1Z|B Chain B, Crystal Structure Of The Parasite Protesase Inhibitor
Chagasin In Complex With Papain
Length = 212
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 92/235 (39%), Gaps = 54/235 (22%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN 164
++W + +++QGSCGS WA AV + + I R S +L+ C +
Sbjct: 5 VDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKI--RTGNLNEYSEQELLDCDRRS-Y 61
Query: 165 GCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPN----T 220
GC GG+ A + GI TY PYE G C+ E
Sbjct: 62 GCNGGYPWSALQLVAQYGIHYRNTY-------PYE--------GVQRYCRSREKGPYAAK 106
Query: 221 PECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKT 280
+ +R+ QP N G + YS+ +++ E D LY+
Sbjct: 107 TDGVRQVQP---------YNEGALLYSIANQPVSVVLEAAGK-----------DFQLYRG 146
Query: 281 GIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
GI+ G + +HA+ +G+G Y L+ NS+ T WGENG RI
Sbjct: 147 GIFVGPCGNKV-DHAVAAVGYGPN-----------YILIKNSWGTGWGENGYIRI 189
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 18/93 (19%)
Query: 391 PANEETIMREIFRHGPVEGSMTIYA---DMILYKTGIYKHVAGGPLGEHAIRIIGWGQEP 447
P NE ++ I PV S+ + A D LY+ GI+ G + +HA+ +G+G
Sbjct: 115 PYNEGALLYSIANQ-PV--SVVLEAAGKDFQLYRGGIFVGPCGNKV-DHAVAAVGYGPN- 169
Query: 448 LGEGTSSVVKYWLVANSFNTNWGENGLFRIVRG 480
Y L+ NS+ T WGENG RI RG
Sbjct: 170 ----------YILIKNSWGTGWGENGYIRIKRG 192
>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding
Diversity Of E64-C To Papain S2 And S3 Subsites
Length = 212
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 93/235 (39%), Gaps = 54/235 (22%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN 164
++W + +++QGSCGS WA AV + + I R + S +L+ C +
Sbjct: 5 VDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKI--RTGNLNQYSEQELLDCDRRS-Y 61
Query: 165 GCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPN----T 220
GC GG+ A + GI TY PYE G C+ E
Sbjct: 62 GCNGGYPWSALQLVAQYGIHYRNTY-------PYE--------GVQRYCRSREKGPYAAK 106
Query: 221 PECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKT 280
+ +R+ QP N G + YS+ +++ + D LY+
Sbjct: 107 TDGVRQVQP---------YNQGALLYSIANQPVSVVLQAAGK-----------DFQLYRG 146
Query: 281 GIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
GI+ G + +HA+ +G+G Y L+ NS+ T WGENG RI
Sbjct: 147 GIFVGPCGNKV-DHAVAAVGYGPN-----------YILIKNSWGTGWGENGYIRI 189
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 18/93 (19%)
Query: 391 PANEETIMREIFRHGPVEGSMTIYA---DMILYKTGIYKHVAGGPLGEHAIRIIGWGQEP 447
P N+ ++ I PV S+ + A D LY+ GI+ G + +HA+ +G+G
Sbjct: 115 PYNQGALLYSIANQ-PV--SVVLQAAGKDFQLYRGGIFVGPCGNKV-DHAVAAVGYGPN- 169
Query: 448 LGEGTSSVVKYWLVANSFNTNWGENGLFRIVRG 480
Y L+ NS+ T WGENG RI RG
Sbjct: 170 ----------YILIKNSWGTGWGENGYIRIKRG 192
>pdb|1PIP|A Chain A, Crystal Structure Of
Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide
Complex At 1.7 Angstroms Resolution: Noncovalent Binding
Mode Of A Common Sequence Of Endogenous Thiol Protease
Inhibitors
pdb|1POP|A Chain A, X-Ray Crystallographic Structure Of A Papain-Leupeptin
Complex
pdb|1CVZ|A Chain A, Crystal Structure Analysis Of Papain With
Clik148(Cathepsin L Specific Inhibitor)
pdb|1BP4|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1BQI|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1PE6|A Chain A, Refined X-Ray Structure Of Papain(Dot)e-64-C Complex At
2.1-Angstroms Resolution
pdb|1PPD|A Chain A, Restrained Least-Squares Refinement Of The Sulfhydryl
Protease Papain To 2.0 Angstroms
pdb|2PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|4PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|6PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|1PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|5PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
Length = 212
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 93/235 (39%), Gaps = 54/235 (22%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN 164
++W + +++QGSCGS WA AV + + I R + S +L+ C +
Sbjct: 5 VDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKI--RTGNLNQYSEQELLDCDRRS-Y 61
Query: 165 GCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPN----T 220
GC GG+ A + GI TY PYE G C+ E
Sbjct: 62 GCNGGYPWSALQLVAQYGIHYRNTY-------PYE--------GVQRYCRSREKGPYAAK 106
Query: 221 PECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKT 280
+ +R+ QP N G + YS+ +++ + D LY+
Sbjct: 107 TDGVRQVQP---------YNQGALLYSIANQPVSVVLQAAGK-----------DFQLYRG 146
Query: 281 GIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
GI+ G + +HA+ +G+G Y L+ NS+ T WGENG RI
Sbjct: 147 GIFVGPCGNKV-DHAVAAVGYGPN-----------YILIKNSWGTGWGENGYIRI 189
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 18/93 (19%)
Query: 391 PANEETIMREIFRHGPVEGSMTIYA---DMILYKTGIYKHVAGGPLGEHAIRIIGWGQEP 447
P N+ ++ I PV S+ + A D LY+ GI+ G + +HA+ +G+G
Sbjct: 115 PYNQGALLYSIANQ-PV--SVVLQAAGKDFQLYRGGIFVGPCGNKV-DHAVAAVGYGPN- 169
Query: 448 LGEGTSSVVKYWLVANSFNTNWGENGLFRIVRG 480
Y L+ NS+ T WGENG RI RG
Sbjct: 170 ----------YILIKNSWGTGWGENGYIRIKRG 192
>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
pdb|3H7D|E Chain E, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
Length = 215
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 96/229 (41%), Gaps = 51/229 (22%)
Query: 113 IQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHG 172
+ +++QG CGS WA +V A+ + + + + + LS +LV C + +GC GG+
Sbjct: 13 VTPVKNQGQCGSCWAFSSVGALEGQ--LKKKTGKLLNLSPQNLVDCVSE-NDGCGGGYMT 69
Query: 173 KAWKY-WVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGY 231
A++Y GI S Y PY G SC N KC+ GY
Sbjct: 70 NAFQYVQKNRGIDSEDAY-------PYV--------GQEESCMYNPTGKAA---KCR-GY 110
Query: 232 DVSYEDDLNFGRIAYSLP-ANEETIMREIFRHGPVEGSMTIYADMI---LYKTGIY-KHV 286
+P NE+ + R + R GPV S+ I A + Y G+Y
Sbjct: 111 R--------------EIPEGNEKALKRAVARVGPV--SVAIDASLTSFQFYSKGVYYDES 154
Query: 287 AGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
HA+ +G+G+ S K+W++ NS+ NWG G ++
Sbjct: 155 CNSDNLNHAVLAVGYGE-------SKGNKHWIIKNSWGENWGMGGYIKM 196
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 16/110 (14%)
Query: 393 NEETIMREIFRHGPVEGSMTIYADMI---LYKTGIY-KHVAGGPLGEHAIRIIGWGQEPL 448
NE+ + R + R GPV S+ I A + Y G+Y HA+ +G+G+
Sbjct: 117 NEKALKRAVARVGPV--SVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGE--- 171
Query: 449 GEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNE-CGIEADITAGLPKI 497
S K+W++ NS+ NWG G ++ R +N CGI A++ A PK+
Sbjct: 172 ----SKGNKHWIIKNSWGENWGMGGYIKMARNKNNACGI-ANL-ASFPKM 215
>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|B Chain B, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|C Chain C, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|D Chain D, Crystal Structure Of Wild Type Human Procathepsin K
pdb|1BY8|A Chain A, The Crystal Structure Of Human Procathepsin K
Length = 314
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 125/303 (41%), Gaps = 73/303 (24%)
Query: 55 EKNALSKLTLSELEMRMGVHP----------------DSKLPQNRLPLLVQLSDPLEELP 98
EKN L +++ LE +GVH K+ ++PL S+ +P
Sbjct: 36 EKN-LKYISIHNLEASLGVHTYELAMNHLGDMTSEEVVQKMTGLKVPLSHSRSNDTLYIP 94
Query: 99 EGFDAR----INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDD 154
E ++ R +++ + +++QG CGS WA +V A+ + + + + + LS +
Sbjct: 95 E-WEGRAPDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQ--LKKKTGKLLNLSPQN 151
Query: 155 LVSCCKDCGNGCQGGFHGKAWKY-WVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSC 213
LV C + +GC GG+ A++Y GI S Y PY G SC
Sbjct: 152 LVDCVSE-NDGCGGGYMTNAFQYVQKNRGIDSEDAY-------PYV--------GQEESC 195
Query: 214 QDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLP-ANEETIMREIFRHGPVEGSMTIY 272
N KC+ GY +P NE+ + R + R GPV S+ I
Sbjct: 196 MYNPTGKAA---KCR-GYR--------------EIPEGNEKALKRAVARVGPV--SVAID 235
Query: 273 ADMI---LYKTGIY-KHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWG 328
A + Y G+Y HA+ +G+G + +G K+W++ NS+ NWG
Sbjct: 236 ASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYG---IQKGN----KHWIIKNSWGENWG 288
Query: 329 ENG 331
G
Sbjct: 289 NKG 291
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 16/110 (14%)
Query: 393 NEETIMREIFRHGPVEGSMTIYADMI---LYKTGIY-KHVAGGPLGEHAIRIIGWGQEPL 448
NE+ + R + R GPV S+ I A + Y G+Y HA+ +G+G +
Sbjct: 216 NEKALKRAVARVGPV--SVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYG---I 270
Query: 449 GEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNE-CGIEADITAGLPKI 497
+G K+W++ NS+ NWG G + R +N CGI A++ A PK+
Sbjct: 271 QKGN----KHWIIKNSWGENWGNKGYILMARNKNNACGI-ANL-ASFPKM 314
>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana
pdb|2BDZ|B Chain B, Mexicain From Jacaratia Mexicana
pdb|2BDZ|C Chain C, Mexicain From Jacaratia Mexicana
pdb|2BDZ|D Chain D, Mexicain From Jacaratia Mexicana
Length = 214
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 97/243 (39%), Gaps = 62/243 (25%)
Query: 101 FDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCK 160
+ I+W + +++Q CGS WA V + I + + + LS +L+ C +
Sbjct: 1 YPESIDWREKGAVTPVKNQNPCGSCWAFSTVATIEGINKIIT--GQLISLSEQELLDCER 58
Query: 161 DCGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNT 220
+GC GG+ + +Y V G+ + Y PYE C+ +
Sbjct: 59 R-SHGCDGGYQTTSLQYVVDNGVHTEREY-------PYE--------KKQGRCRAKDKKG 102
Query: 221 PECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYAD-----M 275
P+ Y Y+ +PAN+E + + + PV ++ D
Sbjct: 103 PKV-------YITGYK----------YVPANDEISLIQAIANQPV----SVVTDSRGRGF 141
Query: 276 ILYKTGIYKHVAGGPLG---EHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGL 332
YK GIY+ GP G +HA+ +G+G+ Y L+ NS+ NWGE G
Sbjct: 142 QFYKGGIYE----GPCGTNTDHAVTAVGYGKT-----------YLLLKNSWGPNWGEKGY 186
Query: 333 FRI 335
RI
Sbjct: 187 IRI 189
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 31/109 (28%)
Query: 390 LPANEETIMREIFRHGPVEGSMTIYAD-----MILYKTGIYKHVAGGPLG---EHAIRII 441
+PAN+E + + + PV ++ D YK GIY+ GP G +HA+ +
Sbjct: 113 VPANDEISLIQAIANQPV----SVVTDSRGRGFQFYKGGIYE----GPCGTNTDHAVTAV 164
Query: 442 GWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRG----QNECGI 486
G+G+ Y L+ NS+ NWGE G RI R + CG+
Sbjct: 165 GYGKT-----------YLLLKNSWGPNWGEKGYIRIKRASGRSKGTCGV 202
>pdb|1MHW|A Chain A, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|B Chain B, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 175
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 86/203 (42%), Gaps = 37/203 (18%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN 164
++W + +++QG CGS WA A A+ + + + R + LS +LV C GN
Sbjct: 5 VDWREKGYVTPVKNQGQCGSXWAFSATGALEGQ--MFRKTGRLISLSEQNLVDCSGPQGN 62
Query: 165 -GCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPEC 223
GC GG A++Y G + + PYE + SC+ N
Sbjct: 63 EGCNGGLMDYAFQYVQDNGGL------DSEESYPYE--------ATEESCKYN------- 101
Query: 224 IRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTI-YADMILYKTGI 282
P Y V+ +D F +P E+ +M+ + GP+ ++ + + YK GI
Sbjct: 102 -----PKYSVA--NDTGF----VDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGI 150
Query: 283 Y-KHVAGGPLGEHAIRIIGWGQE 304
Y + +H + ++G+G E
Sbjct: 151 YFEPDCSSEDMDHGVLVVGYGFE 173
>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A
Tetrafluorophenoxymethyl Ketone Inhibitor
Length = 221
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 94/233 (40%), Gaps = 39/233 (16%)
Query: 103 ARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDC 162
A ++W + ++DQG CGS WA A+ + + +A G L+ LVSC K
Sbjct: 3 AAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLA--GHPLTNLAEQMLVSCDKT- 59
Query: 163 GNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPE 222
+GC GG A+++ V +G Y PY E +P
Sbjct: 60 DSGCSGGLMNNAFEWIVQEN--NGAVYTEDS--YPYA---------------SGEGISPP 100
Query: 223 CIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGI 282
C G+ V G + LP +E I + +GPV ++ + M Y G+
Sbjct: 101 CTTS---GHTVGATIT---GHV--ELPQDEAQIAAWLAVNGPVAVAVDASSWMT-YTGGV 151
Query: 283 YKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
L +H + ++G+ + V YW++ NS+ T WGE G RI
Sbjct: 152 MTSCVSEQL-DHGVLLVGYND-------GAAVPYWIIKNSWTTQWGEEGYIRI 196
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 9/105 (8%)
Query: 390 LPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLG 449
LP +E I + +GPV ++ + M Y G+ L +H + ++G+
Sbjct: 118 LPQDEAQIAAWLAVNGPVAVAVDASSWMT-YTGGVMTSCVSEQL-DHGVLLVGYND---- 171
Query: 450 EGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITAGL 494
+ V YW++ NS+ T WGE G RI +G N+C ++ + ++ +
Sbjct: 172 ---GAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAV 213
>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
pdb|3HD3|B Chain B, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
Length = 215
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 94/233 (40%), Gaps = 39/233 (16%)
Query: 103 ARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDC 162
A ++W + ++DQG CGS WA A+ + + +A G L+ LVSC K
Sbjct: 3 AAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLA--GHPLTNLAEQMLVSCDKT- 59
Query: 163 GNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPE 222
+GC GG A+++ V +G Y PY E +P
Sbjct: 60 DSGCSGGLMNNAFEWIVQEN--NGAVYTEDS--YPYA---------------SGEGISPP 100
Query: 223 CIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGI 282
C G+ V G + LP +E I + +GPV ++ + M Y G+
Sbjct: 101 CTTS---GHTVGATIT---GHV--ELPQDEAQIAAWLAVNGPVAVAVDASSWMT-YTGGV 151
Query: 283 YKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
L +H + ++G+ + V YW++ NS+ T WGE G RI
Sbjct: 152 MTSCVSEQL-DHGVLLVGYND-------GAAVPYWIIKNSWTTQWGEEGYIRI 196
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 9/105 (8%)
Query: 390 LPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLG 449
LP +E I + +GPV ++ + M Y G+ L +H + ++G+
Sbjct: 118 LPQDEAQIAAWLAVNGPVAVAVDASSWMT-YTGGVMTSCVSEQL-DHGVLLVGYND---- 171
Query: 450 EGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITAGL 494
+ V YW++ NS+ T WGE G RI +G N+C ++ + ++ +
Sbjct: 172 ---GAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAV 213
>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
pdb|3BCN|B Chain B, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
Length = 209
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 88/240 (36%), Gaps = 54/240 (22%)
Query: 97 LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLV 156
LPE D R P +++QG CGS WA V + I R + LS LV
Sbjct: 1 LPEHVDWRAKGAVIP----LKNQGKCGSCWAFSTVTTVESINQI--RTGNLISLSEQQLV 54
Query: 157 SCCKDCGNGCQGGFHGKAWKYWVTT-GIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQD 215
C K +GC+GG+ +A++Y + GI + Y K ++ PC D
Sbjct: 55 DCSKK-NHGCKGGYFDRAYQYIIANGGIDTEANYPYK----AFQGPCRAAKKVVRI---D 106
Query: 216 NEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADM 275
P+C NE + + V
Sbjct: 107 GCKGVPQC---------------------------NENALKNAVASQPSVVAIDASSKQF 139
Query: 276 ILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
YK GI+ G L H + I+G+G++ YW+V NS+ +WGE G R+
Sbjct: 140 QHYKGGIFTGPCGTKL-NHGVVIVGYGKD-----------YWIVRNSWGRHWGEQGYTRM 187
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 14/69 (20%)
Query: 420 YKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVR 479
YK GI+ G L H + I+G+G++ YW+V NS+ +WGE G R+ R
Sbjct: 142 YKGGIFTGPCGTKL-NHGVVIVGYGKD-----------YWIVRNSWGRHWGEQGYTRMKR 189
Query: 480 --GQNECGI 486
G CGI
Sbjct: 190 VGGCGLCGI 198
>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
pdb|2B1N|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
Length = 246
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 99/250 (39%), Gaps = 58/250 (23%)
Query: 96 ELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDL 155
+ PE +D W I +++ QG CGSGWA A A+ IA+ V LS +L
Sbjct: 1 DAPESWD----WSKKGVITKVKFQGQCGSGWAFSATGAIEAAHAIAT--GNLVSLSEQEL 54
Query: 156 VSCCKDCGNGCQGGFHGKAWKYWVTT--GIVSGGTYASKQGCRPYEIPCERYMNGSHSSC 213
+ C D GC G+H ++++ WV GI S Y PY+ C
Sbjct: 55 IDCV-DESEGCYNGWHYQSFE-WVVKHGGIASEADY-------PYK--------ARDGKC 97
Query: 214 QDNEPNTPECIRKCQPGYDVSYEDDLNFG---RIAYSLPANEETIMREIFRHGPVEGSMT 270
+ NE I N+G S + E+ ++ P+ S+
Sbjct: 98 KANEIQDKVTID--------------NYGVQILSNESTESEAESSLQSFVLEQPISVSID 143
Query: 271 IYADMILYKTGIYKHVAGG----PLG-EHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNT 325
D Y GIY GG P G H + I+G+G E V YW+ NS+
Sbjct: 144 A-KDFHFYSGGIYD---GGNCSSPYGINHFVLIVGYGSE-------DGVDYWIAKNSWGE 192
Query: 326 NWGENGLFRI 335
+WG +G RI
Sbjct: 193 DWGIDGYIRI 202
Score = 35.4 bits (80), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 15/69 (21%)
Query: 416 DMILYKTGIYKHVAGG----PLG-EHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWG 470
D Y GIY GG P G H + I+G+G E V YW+ NS+ +WG
Sbjct: 146 DFHFYSGGIYD---GGNCSSPYGINHFVLIVGYGSE-------DGVDYWIAKNSWGEDWG 195
Query: 471 ENGLFRIVR 479
+G RI R
Sbjct: 196 IDGYIRIQR 204
>pdb|1ICF|A Chain A, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|C Chain C, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
Length = 175
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 86/203 (42%), Gaps = 37/203 (18%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN 164
++W + +++QG CGS WA A A+ + + + R + LS +LV C GN
Sbjct: 5 VDWREKGYVTPVKNQGQCGSCWAFSATGALEGQ--MFRKTGRLISLSEQNLVDCSGPQGN 62
Query: 165 -GCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPEC 223
GC GG A++Y G + + PYE + SC+ N
Sbjct: 63 EGCNGGLMDYAFQYVQDNGGL------DSEESYPYE--------ATEESCKYN------- 101
Query: 224 IRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTI-YADMILYKTGI 282
P Y V+ +D F +P E+ +M+ + GP+ ++ + + YK GI
Sbjct: 102 -----PKYSVA--NDTGF----VDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGI 150
Query: 283 Y-KHVAGGPLGEHAIRIIGWGQE 304
Y + +H + ++G+G E
Sbjct: 151 YFEPDCSSEDMDHGVLVVGYGFE 173
>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1
pdb|3F5V|B Chain B, C2 Crystal Form Of Mite Allergen Der P 1
Length = 222
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 96/232 (41%), Gaps = 46/232 (19%)
Query: 103 ARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDC 162
A I+ T+ IR QG CGS WA V A ++ +A R ++ + L+ +LV C
Sbjct: 12 AEIDLRQMRTVTPIRMQGGCGSXWAFSGV-AATESAYLAYR-QQSLDLAEQELVDCASQ- 68
Query: 163 GNGCQGGFHGKAWKYWVTTGIVSGGTY---ASKQGCRPYEIPCERYMNGSHSSCQDNEPN 219
+GC G + +Y G+V Y A +Q CR +R+ G + CQ PN
Sbjct: 69 -HGCHGDTIPRGIEYIQHNGVVQESYYRYVAREQSCR--RPNAQRF--GISNYCQIYPPN 123
Query: 220 TPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYK 279
+ IR+ IA + + + FRH +G I D
Sbjct: 124 ANK-IREALA---------QTHSAIAVIIGIKD----LDAFRH--YDGRTIIQRD----- 162
Query: 280 TGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENG 331
G HA+ I+G+ + V YW+V NS++TNWG+NG
Sbjct: 163 -------NGYQPNYHAVNIVGY-------SNAQGVDYWIVRNSWDTNWGDNG 200
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 7/38 (18%)
Query: 436 HAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENG 473
HA+ I+G+ + V YW+V NS++TNWG+NG
Sbjct: 170 HAVNIVGYS-------NAQGVDYWIVRNSWDTNWGDNG 200
>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent
Vinyl Sulfone Inhibitor
pdb|1NL6|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NL6|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1Q6K|A Chain A, Cathepsin K Complexed With T-butyl(1s)-1-cyclohexyl-2-
Oxoethylcarbamate
pdb|1TU6|A Chain A, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1TU6|B Chain B, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1YK7|A Chain A, Cathepsin K Complexed With A Cyanopyrrolidine Inhibitor
pdb|1YK8|A Chain A, Cathepsin K Complexed With A Cyanamide-Based Inhibitor
pdb|1YT7|A Chain A, Cathepsin K Complexed With A Constrained Ketoamide
Inhibitor
pdb|2BDL|A Chain A, Cathepsin K Complexed With A Pyrrolidine Ketoamide-Based
Inhibitor
pdb|2ATO|A Chain A, Crystal Structure Of Human Cathepsin K In Complex With
Myocrisin
pdb|2AUX|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2AUZ|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2FTD|A Chain A, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|2FTD|B Chain B, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|1ATK|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor E-64
pdb|1AU0|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Symmetric Diacylaminomethyl
Ketone Inhibitor
pdb|1AU2|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Propanone Inhibitor
pdb|1AU3|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AU4|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AYU|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Symmetric Biscarbohydrazide
Inhibitor
pdb|1AYV|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Thiazolhydrazide Inhibitor
pdb|1AYW|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent
Benzyloxybenzoylcarbohydrazide Inhibitor
pdb|1BGO|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Peptidomimetic Inhibitor
pdb|3C9E|A Chain A, Crystal Structure Of The Cathepsin K : Chondroitin Sulfate
Complex.
pdb|3KW9|A Chain A, X-Ray Structure Of Cathepsin K Covalently Bound To A
Triazine Ligand
pdb|3KWZ|A Chain A, Cathepsin K In Complex With A Non-Selective 2-Cyano-
Pyrimidine Inhibitor
pdb|3KX1|A Chain A, Cathepsin K In Complex With A Selective 2-Cyano-Pyrimidine
Inhibitor
pdb|3KWB|X Chain X, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3KWB|Y Chain Y, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3O1G|A Chain A, Cathepsin K Covalently Bound To A 2-Cyano Pyrimidine
Inhibitor With A Benzyl P3 Group.
pdb|3O0U|A Chain A, Cathepsin K Covalently Bound To A Cyano-Pyrimidine
Inhibitor With Improved Selectivity Over Herg
pdb|4DMX|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|B Chain B, Cathepsin K Inhibitor
Length = 215
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 94/224 (41%), Gaps = 49/224 (21%)
Query: 113 IQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHG 172
+ +++QG CGS WA +V A+ + + + + + LS +LV C + +GC GG+
Sbjct: 13 VTPVKNQGQCGSCWAFSSVGALEGQ--LKKKTGKLLNLSPQNLVDCVSE-NDGCGGGYMT 69
Query: 173 KAWKY-WVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGY 231
A++Y GI S Y PY G SC N KC+ GY
Sbjct: 70 NAFQYVQKNRGIDSEDAY-------PYV--------GQEESCMYNPTGKAA---KCR-GY 110
Query: 232 DVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMI---LYKTGIY-KHVA 287
E NE+ + R + R GPV S+ I A + Y G+Y
Sbjct: 111 REIPE-------------GNEKALKRAVARVGPV--SVAIDASLTSFQFYSKGVYYDESC 155
Query: 288 GGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENG 331
HA+ +G+G + +G K+W++ NS+ NWG G
Sbjct: 156 NSDNLNHAVLAVGYG---IQKGN----KHWIIKNSWGENWGNKG 192
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 16/110 (14%)
Query: 393 NEETIMREIFRHGPVEGSMTIYADMI---LYKTGIY-KHVAGGPLGEHAIRIIGWGQEPL 448
NE+ + R + R GPV S+ I A + Y G+Y HA+ +G+G +
Sbjct: 117 NEKALKRAVARVGPV--SVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYG---I 171
Query: 449 GEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNE-CGIEADITAGLPKI 497
+G K+W++ NS+ NWG G + R +N CGI A++ A PK+
Sbjct: 172 QKGN----KHWIIKNSWGENWGNKGYILMARNKNNACGI-ANL-ASFPKM 215
>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized
Norleucine Aldehyde
Length = 214
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 94/224 (41%), Gaps = 49/224 (21%)
Query: 113 IQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHG 172
+ +++QG CGS WA +V A+ + + + + + LS +LV C + +GC GG+
Sbjct: 12 VTPVKNQGQCGSCWAFSSVGALEGQ--LKKKTGKLLNLSPQNLVDCVSE-NDGCGGGYMT 68
Query: 173 KAWKY-WVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGY 231
A++Y GI S Y PY G SC N KC+ GY
Sbjct: 69 NAFQYVQKNRGIDSEDAY-------PYV--------GQEESCMYNPTGKAA---KCR-GY 109
Query: 232 DVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMI---LYKTGIY-KHVA 287
E NE+ + R + R GPV S+ I A + Y G+Y
Sbjct: 110 REIPE-------------GNEKALKRAVARVGPV--SVAIDASLTSFQFYSKGVYYDESC 154
Query: 288 GGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENG 331
HA+ +G+G + +G K+W++ NS+ NWG G
Sbjct: 155 NSDNLNHAVLAVGYG---IQKGN----KHWIIKNSWGENWGNKG 191
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 16/110 (14%)
Query: 393 NEETIMREIFRHGPVEGSMTIYADMI---LYKTGIY-KHVAGGPLGEHAIRIIGWGQEPL 448
NE+ + R + R GPV S+ I A + Y G+Y HA+ +G+G +
Sbjct: 116 NEKALKRAVARVGPV--SVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYG---I 170
Query: 449 GEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNE-CGIEADITAGLPKI 497
+G K+W++ NS+ NWG G + R +N CGI A++ A PK+
Sbjct: 171 QKGN----KHWIIKNSWGENWGNKGYILMARNKNNACGI-ANL-ASFPKM 214
>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abe854
pdb|1U9W|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abi491
pdb|1U9X|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abj688
pdb|2R6N|A Chain A, Crystal Structure Of A Pyrrolopyrimidine Inhibitor In
Complex With Human Cathepsin K
Length = 217
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 94/224 (41%), Gaps = 49/224 (21%)
Query: 113 IQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHG 172
+ +++QG CGS WA +V A+ + + + + + LS +LV C + +GC GG+
Sbjct: 15 VTPVKNQGQCGSCWAFSSVGALEGQ--LKKKTGKLLNLSPQNLVDCVSE-NDGCGGGYMT 71
Query: 173 KAWKY-WVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGY 231
A++Y GI S Y PY G SC N KC+ GY
Sbjct: 72 NAFQYVQKNRGIDSEDAY-------PYV--------GQEESCMYNPTGKAA---KCR-GY 112
Query: 232 DVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMI---LYKTGIY-KHVA 287
E NE+ + R + R GPV S+ I A + Y G+Y
Sbjct: 113 REIPE-------------GNEKALKRAVARVGPV--SVAIDASLTSFQFYSKGVYYDESC 157
Query: 288 GGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENG 331
HA+ +G+G + +G K+W++ NS+ NWG G
Sbjct: 158 NSDNLNHAVLAVGYG---IQKGN----KHWIIKNSWGENWGNKG 194
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 16/110 (14%)
Query: 393 NEETIMREIFRHGPVEGSMTIYADMI---LYKTGIY-KHVAGGPLGEHAIRIIGWGQEPL 448
NE+ + R + R GPV S+ I A + Y G+Y HA+ +G+G +
Sbjct: 119 NEKALKRAVARVGPV--SVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYG---I 173
Query: 449 GEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNE-CGIEADITAGLPKI 497
+G K+W++ NS+ NWG G + R +N CGI A++ A PK+
Sbjct: 174 QKGN----KHWIIKNSWGENWGNKGYILMARNKNNACGI-ANL-ASFPKM 217
>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A
Ketoamide Warhead
Length = 213
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 95/225 (42%), Gaps = 51/225 (22%)
Query: 113 IQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHG 172
+ +++QG CGS WA +V A+ + + + + + LS +LV C + +GC GG+
Sbjct: 11 VTPVKNQGQCGSCWAFSSVGALEGQ--LKKKTGKLLNLSPQNLVDCVSE-NDGCGGGYMT 67
Query: 173 KAWKY-WVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGY 231
A++Y GI S Y PY G SC N KC+ GY
Sbjct: 68 NAFQYVQKNRGIDSEDAY-------PYV--------GQEESCMYNPTGKAA---KCR-GY 108
Query: 232 DVSYEDDLNFGRIAYSLP-ANEETIMREIFRHGPVEGSMTIYADMI---LYKTGIY-KHV 286
+P NE+ + R + R GPV S+ I A + Y G+Y
Sbjct: 109 R--------------EIPEGNEKALKRAVARVGPV--SVAIDASLTSFQFYSKGVYYDES 152
Query: 287 AGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENG 331
HA+ +G+G + +G K+W++ NS+ NWG G
Sbjct: 153 CNSDNLNHAVLAVGYG---IQKGN----KHWIIKNSWGENWGNKG 190
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 16/110 (14%)
Query: 393 NEETIMREIFRHGPVEGSMTIYADMI---LYKTGIY-KHVAGGPLGEHAIRIIGWGQEPL 448
NE+ + R + R GPV S+ I A + Y G+Y HA+ +G+G +
Sbjct: 115 NEKALKRAVARVGPV--SVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYG---I 169
Query: 449 GEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNE-CGIEADITAGLPKI 497
+G K+W++ NS+ NWG G + R +N CGI A++ A PK+
Sbjct: 170 QKGN----KHWIIKNSWGENWGNKGYILMARNKNNACGI-ANL-ASFPKM 213
>pdb|1MEG|A Chain A, Crystal Structure Of A Caricain D158e Mutant In Complex
With E-64
Length = 216
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 75/255 (29%), Positives = 102/255 (40%), Gaps = 62/255 (24%)
Query: 97 LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLV 156
LPE D W + +R QGSCGS WA AV + I R + V LS +LV
Sbjct: 1 LPENVD----WRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKI--RTGKLVELSEQELV 54
Query: 157 SCCKDCGNGCQGGFHGKAWKYWVTTGI--VSGGTYASKQGCRPYEIPCERYMNGSHSSCQ 214
C + +GC+GG+ A +Y GI S Y +KQG +C+
Sbjct: 55 DCERR-SHGCKGGYPPYALEYVAKNGIHLRSKYPYKAKQG-----------------TCR 96
Query: 215 DNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYAD 274
+ P GR+ P NE ++ I + PV S+ + +
Sbjct: 97 AKQVGGP-------------IVKTSGVGRVQ---PNNEGNLLNAIAKQ-PV--SVVVESK 137
Query: 275 ---MILYKTGIYKHVAGGPLG---EHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWG 328
LYK GI++ GP G EHA+ + G G S Y L+ NS+ T WG
Sbjct: 138 GRPFQLYKGGIFE----GPCGTKVEHAVTAV-------GYGKSGGKGYILIKNSWGTAWG 186
Query: 329 ENGLFRIGCRPYEIP 343
E G RI P P
Sbjct: 187 EKGYIRIKRAPGNSP 201
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 45/95 (47%), Gaps = 20/95 (21%)
Query: 391 PANEETIMREIFRHGPVEGSMTIYAD---MILYKTGIYKHVAGGPLG---EHAIRIIGWG 444
P NE ++ I + PV S+ + + LYK GI++ GP G EHA+ +G
Sbjct: 115 PNNEGNLLNAIAKQ-PV--SVVVESKGRPFQLYKGGIFE----GPCGTKVEHAVTAVG-- 165
Query: 445 QEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVR 479
G S Y L+ NS+ T WGE G RI R
Sbjct: 166 -----YGKSGGKGYILIKNSWGTAWGEKGYIRIKR 195
>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F
pdb|1M6D|B Chain B, Crystal Structure Of Human Cathepsin F
Length = 214
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 52/100 (52%), Gaps = 11/100 (11%)
Query: 390 LPANEETIMREIFRHGPVEGSMTIYADMILYKTGI---YKHVAGGPLGEHAIRIIGWGQE 446
L NE+ + + + GP+ ++ + M Y+ GI + + L +HA+ ++G+GQ
Sbjct: 113 LSQNEQKLAAWLAKRGPISVAINAFG-MQFYRHGISRPLRPLCSPWLIDHAVLLVGYGQR 171
Query: 447 PLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGI 486
S V +W + NS+ T+WGE G + + RG CG+
Sbjct: 172 -------SDVPFWAIKNSWGTDWGEKGYYYLHRGSGACGV 204
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/233 (21%), Positives = 88/233 (37%), Gaps = 46/233 (19%)
Query: 106 NWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNG 165
+W + +++DQG CGS WA +V + ++G + C
Sbjct: 6 DWRSKGAVTKVKDQGMCGSCWAF-SVTGNVEGQWFLNQGTLLSLSEQ--ELLDCDKMDKA 62
Query: 166 CQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIR 225
C GG A Y++ + E + G SCQ
Sbjct: 63 CMGGLPSNA--------------YSAIKNLGGLETEDDYSYQGHMQSCQ----------- 97
Query: 226 KCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGI--- 282
S E + + + L NE+ + + + GP+ ++ + M Y+ GI
Sbjct: 98 -------FSAEKAKVYIQDSVELSQNEQKLAAWLAKRGPISVAINAFG-MQFYRHGISRP 149
Query: 283 YKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
+ + L +HA+ ++G+GQ S V +W + NS+ T+WGE G + +
Sbjct: 150 LRPLCSPWLIDHAVLLVGYGQR-------SDVPFWAIKNSWGTDWGEKGYYYL 195
>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
pdb|2AS8|B Chain B, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
Length = 222
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 93/239 (38%), Gaps = 60/239 (25%)
Query: 103 ARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDC 162
A I+ T+ IR QG CGS WA V A ++ +A R ++ + L+ +LV C
Sbjct: 12 AEIDLRQMRTVTPIRMQGGCGSCWAFSGV-AATESAYLAYR-QQSLDLAEQELVDCASQ- 68
Query: 163 GNGCQGGFHGKAWKYWVTTGIVSGGTY---ASKQGCRPYEIPCERYMNGSHSSCQDNEPN 219
+GC G + +Y G+V Y A +Q CR +R+ G + CQ PN
Sbjct: 69 -HGCHGDTIPRGIEYIQHNGVVQESYYRYVAREQSCR--RPNAQRF--GISNYCQIYPPN 123
Query: 220 TPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREI-------FRHGPVEGSMTIY 272
+I +L I I FRH +G I
Sbjct: 124 A---------------------NKIREALAQTHSAIAVIIGIKDLDAFRH--YDGRTIIQ 160
Query: 273 ADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENG 331
D G HA+ I+G+ + V YW+V NS++TNWG+NG
Sbjct: 161 RD------------NGYQPNYHAVNIVGY-------SNAQGVDYWIVRNSWDTNWGDNG 200
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 7/38 (18%)
Query: 436 HAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENG 473
HA+ I+G+ + V YW+V NS++TNWG+NG
Sbjct: 170 HAVNIVGYS-------NAQGVDYWIVRNSWDTNWGDNG 200
>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
pdb|3RVX|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
Length = 222
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 95/232 (40%), Gaps = 46/232 (19%)
Query: 103 ARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDC 162
A I+ T+ IR QG CGS WA V A ++ +A R + + L+ +LV C
Sbjct: 12 AEIDLRQMRTVTPIRMQGGCGSCWAFSGV-AATESAYLAYRNQS-LDLAEQELVDCASQ- 68
Query: 163 GNGCQGGFHGKAWKYWVTTGIVSGGTY---ASKQGCRPYEIPCERYMNGSHSSCQDNEPN 219
+GC G + +Y G+V Y A +Q CR +R+ G + CQ PN
Sbjct: 69 -HGCHGDTIPRGIEYIQHNGVVQESYYRYVAREQSCR--RPNAQRF--GISNYCQIYPPN 123
Query: 220 TPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYK 279
+ IR+ IA + + + FRH +G I D
Sbjct: 124 VNK-IREALA---------QTHSAIAVIIGIKD----LDAFRH--YDGRTIIQRD----- 162
Query: 280 TGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENG 331
G HA+ I+G+ + V YW+V NS++TNWG+NG
Sbjct: 163 -------NGYQPNYHAVNIVGY-------SNAQGVDYWIVRNSWDTNWGDNG 200
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 7/38 (18%)
Query: 436 HAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENG 473
HA+ I+G+ + V YW+V NS++TNWG+NG
Sbjct: 170 HAVNIVGYS-------NAQGVDYWIVRNSWDTNWGDNG 200
>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor
Length = 215
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 98/225 (43%), Gaps = 51/225 (22%)
Query: 113 IQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHG 172
+ +++QG CGS WA +V A+ + + + + + LS +LV C + +GC GG+
Sbjct: 13 VTPVKNQGQCGSCWAFSSVGALEGQ--LKKKTGKLLNLSPQNLVDCVSE-NDGCGGGYMT 69
Query: 173 KAWKY-WVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGY 231
A++Y GI S Y PY G SC N KC+ GY
Sbjct: 70 NAFQYVQRNRGIDSEDAY-------PYV--------GQDESCMYNPTGKAA---KCR-GY 110
Query: 232 DVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMI---LYKTGIY--KHV 286
E NE+ + R + R GPV S+ I A + Y G+Y ++
Sbjct: 111 REIPE-------------GNEKALKRAVARVGPV--SVAIDASLTSFQFYSKGVYYDENC 155
Query: 287 AGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENG 331
+ L HA+ +G+G + +G K+W++ NS+ +WG G
Sbjct: 156 SSDNL-NHAVLAVGYG---IQKGN----KHWIIKNSWGESWGNKG 192
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 18/111 (16%)
Query: 393 NEETIMREIFRHGPVEGSMTIYADMI---LYKTGIY--KHVAGGPLGEHAIRIIGWGQEP 447
NE+ + R + R GPV S+ I A + Y G+Y ++ + L HA+ +G+G
Sbjct: 117 NEKALKRAVARVGPV--SVAIDASLTSFQFYSKGVYYDENCSSDNL-NHAVLAVGYG--- 170
Query: 448 LGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNE-CGIEADITAGLPKI 497
+ +G K+W++ NS+ +WG G + R +N CGI A PK+
Sbjct: 171 IQKGN----KHWIIKNSWGESWGNKGYILMARNKNNACGIAN--LASFPKM 215
>pdb|1PPO|A Chain A, Determination Of The Structure Of Papaya Protease Omega
Length = 216
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 102/255 (40%), Gaps = 62/255 (24%)
Query: 97 LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLV 156
LPE D W + +R QGSCGS WA AV + I R + V LS +LV
Sbjct: 1 LPENVD----WRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKI--RTGKLVELSEQELV 54
Query: 157 SCCKDCGNGCQGGFHGKAWKYWVTTGI--VSGGTYASKQGCRPYEIPCERYMNGSHSSCQ 214
C + +GC+GG+ A +Y GI S Y +KQG +C+
Sbjct: 55 DCERR-SHGCKGGYPPYALEYVAKNGIHLRSKYPYKAKQG-----------------TCR 96
Query: 215 DNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYAD 274
+ P GR+ P NE ++ I + PV S+ + +
Sbjct: 97 AKQVGGP-------------IVKTSGVGRVQ---PNNEGNLLNAIAKQ-PV--SVVVESK 137
Query: 275 ---MILYKTGIYKHVAGGPLG---EHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWG 328
LYK GI++ GP G +HA+ + G G S Y L+ NS+ T WG
Sbjct: 138 GRPFQLYKGGIFE----GPCGTKVDHAVTAV-------GYGKSGGKGYILIKNSWGTAWG 186
Query: 329 ENGLFRIGCRPYEIP 343
E G RI P P
Sbjct: 187 EKGYIRIKRAPGNSP 201
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 20/95 (21%)
Query: 391 PANEETIMREIFRHGPVEGSMTIYAD---MILYKTGIYKHVAGGPLG---EHAIRIIGWG 444
P NE ++ I + PV S+ + + LYK GI++ GP G +HA+ +G
Sbjct: 115 PNNEGNLLNAIAKQ-PV--SVVVESKGRPFQLYKGGIFE----GPCGTKVDHAVTAVG-- 165
Query: 445 QEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVR 479
G S Y L+ NS+ T WGE G RI R
Sbjct: 166 -----YGKSGGKGYILIKNSWGTAWGEKGYIRIKR 195
>pdb|1PCI|A Chain A, Procaricain
pdb|1PCI|B Chain B, Procaricain
pdb|1PCI|C Chain C, Procaricain
Length = 322
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 105/259 (40%), Gaps = 56/259 (21%)
Query: 90 LSDPLEELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVR 149
+++ + LPE D W + +R QGSCGS WA AV + I R + V
Sbjct: 100 INEDIVNLPENVD----WRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKI--RTGKLVE 153
Query: 150 LSSDDLVSCCKDCGNGCQGGFHGKAWKYWVTTGI--VSGGTYASKQGCRPYEIPCERYMN 207
LS +LV C + +GC+GG+ A +Y GI S Y +KQG
Sbjct: 154 LSEQELVDCERRS-HGCKGGYPPYALEYVAKNGIHLRSKYPYKAKQG------------- 199
Query: 208 GSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEG 267
+C+ + P I K GR+ P NE ++ I + PV
Sbjct: 200 ----TCRAKQVGGP--IVKTS-----------GVGRVQ---PNNEGNLLNAIAKQ-PV-- 236
Query: 268 SMTIYAD---MILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFN 324
S+ + + LYK GI++ GP G + +G G S Y L+ NS+
Sbjct: 237 SVVVESKGRPFQLYKGGIFE----GPCGTKVDGAV----TAVGYGKSGGKGYILIKNSWG 288
Query: 325 TNWGENGLFRIGCRPYEIP 343
T WGE G RI P P
Sbjct: 289 TAWGEKGYIRIKRAPGNSP 307
>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
pdb|1O0E|B Chain B, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
Length = 208
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 89/242 (36%), Gaps = 58/242 (23%)
Query: 97 LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLV 156
LPE +I+W + +++QGSCGS WA V + I R + LS +LV
Sbjct: 1 LPE----QIDWRKKGAVTPVKNQGSCGSCWAFSTVSTVESINQI--RTGNLISLSEQELV 54
Query: 157 SCCKDCGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDN 216
C K +GC GG A++Y + G + D
Sbjct: 55 DCDKK-NHGCLGGAFVFAYQYIINNGGI------------------------------DT 83
Query: 217 EPNTPECIRK--CQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSM-TIYA 273
+ N P + CQ V D N +P E +++ P ++ A
Sbjct: 84 QANYPYKAVQGPCQAASKVVSIDGYN------GVPFCNEXALKQAVAVQPSTVAIDASSA 137
Query: 274 DMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLF 333
Y +GI+ G L H + I+G+ YW+V NS+ WGE G
Sbjct: 138 QFQQYSSGIFSGPCGTKL-NHGVTIVGY-----------QANYWIVRNSWGRYWGEKGYI 185
Query: 334 RI 335
R+
Sbjct: 186 RM 187
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 14/74 (18%)
Query: 415 ADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGL 474
A Y +GI+ G L H + I+G+ YW+V NS+ WGE G
Sbjct: 137 AQFQQYSSGIFSGPCGTKL-NHGVTIVGYQ-----------ANYWIVRNSWGRYWGEKGY 184
Query: 475 FRIVR--GQNECGI 486
R++R G CGI
Sbjct: 185 IRMLRVGGCGLCGI 198
>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PNS|B Chain B, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PRE|A Chain A, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
pdb|2PRE|B Chain B, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
Length = 208
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 87/242 (35%), Gaps = 58/242 (23%)
Query: 97 LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLV 156
LPE +I+W + +++QG CGS WA V + I R + LS LV
Sbjct: 1 LPE----QIDWRKKGAVTPVKNQGKCGSCWAFSTVSTVESINQI--RTGNLISLSEQQLV 54
Query: 157 SCCKDCGNGCQGGFHGKAWKYWVTTGIV---SGGTYASKQGCRPYEIPCERYMNGSHSSC 213
C K +GC+GG A++Y + G + + Y + QG PC
Sbjct: 55 DCNKK-NHGCKGGAFVYAYQYIIDNGGIDTEANYPYKAVQG------PCRAAKKVVRI-- 105
Query: 214 QDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYA 273
D P C NE + + + V
Sbjct: 106 -DGYKGVPHC---------------------------NENALKKAVASQPSVVAIDASSK 137
Query: 274 DMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLF 333
YK+GI+ G L H + I+G+ ++ YW+V NS+ WGE G
Sbjct: 138 QFQHYKSGIFSGPCGTKL-NHGVVIVGYWKD-----------YWIVRNSWGRYWGEQGYI 185
Query: 334 RI 335
R+
Sbjct: 186 RM 187
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 14/96 (14%)
Query: 393 NEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGT 452
NE + + + V YK+GI+ G L H + I+G+ ++
Sbjct: 115 NENALKKAVASQPSVVAIDASSKQFQHYKSGIFSGPCGTKL-NHGVVIVGYWKD------ 167
Query: 453 SSVVKYWLVANSFNTNWGENGLFRIVR--GQNECGI 486
YW+V NS+ WGE G R+ R G CGI
Sbjct: 168 -----YWIVRNSWGRYWGEQGYIRMKRVGGCGLCGI 198
>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine
Protease Cms1ms2 In Complex With E-64
Length = 213
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 91/239 (38%), Gaps = 62/239 (25%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMS--DRVCIASRGKRHVRLSSDDLVSCCKDC 162
I+W + +R+QG CGS W +V A+ +++ + D C+
Sbjct: 5 IDWRQKGAVTPVRNQGGCGSCWTFSSVAAVEGINKIVTGQLLSLSEQELLD-----CERR 59
Query: 163 GNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPE 222
GC+GGF A +Y +GI Y PYE G C+ ++ P+
Sbjct: 60 SYGCRGGFPLYALQYVANSGIHLRQYY-------PYE--------GVQRQCRASQAKGPK 104
Query: 223 CIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYAD---MILYK 279
GR+ P N E + + PV S+ + A Y+
Sbjct: 105 V-------------KTDGVGRV----PRNNEQALIQRIAIQPV--SIVVEAKGRAFQNYR 145
Query: 280 TGIYKHVAGGPLG---EHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
GI+ GP G +HA+ +G+G + Y L+ NS+ T WGE G RI
Sbjct: 146 GGIFA----GPCGTSIDHAVAAVGYGND-----------YILIKNSWGTGWGEGGYIRI 189
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 50/110 (45%), Gaps = 27/110 (24%)
Query: 390 LPANEETIMREIFRHGPVEGSMTIYAD---MILYKTGIYKHVAGGPLG---EHAIRIIGW 443
+P N E + + PV S+ + A Y+ GI+ GP G +HA+ +G+
Sbjct: 113 VPRNNEQALIQRIAIQPV--SIVVEAKGRAFQNYRGGIFA----GPCGTSIDHAVAAVGY 166
Query: 444 GQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRG----QNECGIEAD 489
G + Y L+ NS+ T WGE G RI RG Q CG+ +D
Sbjct: 167 GND-----------YILIKNSWGTGWGEGGYIRIKRGSGNPQGACGVLSD 205
>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|B Chain B, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|C Chain C, Crystal Structure Of Mite Allergen Der F 1
pdb|3RVV|A Chain A, Crystal Structure Of Der F 1 Complexed With Fab 4c1
Length = 223
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 94/223 (42%), Gaps = 46/223 (20%)
Query: 112 TIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFH 171
T+ IR QG CGS WA V A ++ +A R + LS +LV C +GC G
Sbjct: 22 TVTPIRMQGGCGSCWAFSGV-AATESAYLAYRNTS-LDLSEQELVDCASQ--HGCHGDTI 77
Query: 172 GKAWKYWVTTGIVSGGTY---ASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQ 228
+ +Y G+V +Y A +Q CR P ++ G + CQ P+ + IR+
Sbjct: 78 PRGIEYIQQNGVVEERSYPYVAREQRCRR---PNSQHY-GISNYCQIYPPDVKQ-IREA- 131
Query: 229 PGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAG 288
L A ++ + + F+H +G I +H G
Sbjct: 132 ----------LTQTHTAIAVIIGIKDL--RAFQH--YDGRTII------------QHDNG 165
Query: 289 GPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENG 331
HA+ I+G+ G++ YW+V NS++T WG++G
Sbjct: 166 YQPNYHAVNIVGY-------GSTQGDDYWIVRNSWDTTWGDSG 201
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Query: 424 IYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNE 483
I +H G HA+ I+G+G ++ YW+V NS++T WG++G G N
Sbjct: 159 IIQHDNGYQPNYHAVNIVGYG-------STQGDDYWIVRNSWDTTWGDSGYGYFQAGNNL 211
Query: 484 CGIE 487
IE
Sbjct: 212 MMIE 215
>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor
Bound To Cathepsin K
Length = 215
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 94/225 (41%), Gaps = 51/225 (22%)
Query: 113 IQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHG 172
+ +++QG CGS WA +V A+ ++ A+ + L+ +LV C + +GC GG+
Sbjct: 13 VTPVKNQGQCGSCWAFSSVGALEGQLKKATGA--LLNLAPQNLVDCVSE-NDGCGGGYMT 69
Query: 173 KAWKY-WVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGY 231
A++Y GI S Y PY G SC N KC+ GY
Sbjct: 70 NAFQYVQRNRGIDSEDAY-------PYV--------GQDESCMYNPTGKAA---KCR-GY 110
Query: 232 DVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMI---LYKTGIY--KHV 286
E NE + R + GPV S+ I A + Y G+Y ++
Sbjct: 111 REIPE-------------GNEAALKRAVAAVGPV--SVAIDASLTSFQFYSAGVYYDENC 155
Query: 287 AGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENG 331
+ L HA+ +G+G + K+W++ NS+ +WG G
Sbjct: 156 SSDAL-NHAVLAVGYGIQAGN-------KHWIIKNSWGESWGNAG 192
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 18/111 (16%)
Query: 393 NEETIMREIFRHGPVEGSMTIYADMI---LYKTGIY--KHVAGGPLGEHAIRIIGWGQEP 447
NE + R + GPV S+ I A + Y G+Y ++ + L HA+ +G+G +
Sbjct: 117 NEAALKRAVAAVGPV--SVAIDASLTSFQFYSAGVYYDENCSSDAL-NHAVLAVGYGIQA 173
Query: 448 LGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNE-CGIEADITAGLPKI 497
K+W++ NS+ +WG G + R +N CGI A PK+
Sbjct: 174 GN-------KHWIIKNSWGESWGNAGYILMARNKNNACGIAN--LASFPKM 215
>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of
Crocus Sativus At 1.3 A Resolution
Length = 222
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 97/241 (40%), Gaps = 54/241 (22%)
Query: 103 ARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDC 162
A I+W + ++DQG+CG WA GA A+ I + R + +S +V C
Sbjct: 3 ASIDWRKKGAVTSVKDQGACGMCWAFGATGAIEGIDAITT--GRLISVSEQQIVD-CDTX 59
Query: 163 GNGCQGGFHGKAWKYWVTT-GIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTP 221
GG A+++ +T GI S Y PY G +C N+P
Sbjct: 60 XXXXXGGDADDAFRWVITNGGIASDANY-------PY--------TGVDGTCDLNKP--- 101
Query: 222 ECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKT- 280
I GY ++P + ++ + + PV S+ IY ++
Sbjct: 102 --IAARIDGY--------------TNVPNSSSALLDAVAKQ-PV--SVNIYTSSTSFQLY 142
Query: 281 ---GIY--KHVAGGPLG-EHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFR 334
GI+ + P +H + I+G+G GT++ YW+V NS+ T WG +G
Sbjct: 143 TGPGIFAGSSCSDDPATVDHTVLIVGYGS----NGTNA--DYWIVKNSWGTEWGIDGYIL 196
Query: 335 I 335
I
Sbjct: 197 I 197
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 10/58 (17%)
Query: 435 EHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNE----CGIEA 488
+H + I+G+G GT++ YW+V NS+ T WG +G I R N C I+A
Sbjct: 161 DHTVLIVGYGSN----GTNA--DYWIVKNSWGTEWGIDGYILIRRNTNRPDGVCAIDA 212
>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum With Loop 690-700 Ordered
Length = 265
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/242 (21%), Positives = 98/242 (40%), Gaps = 37/242 (15%)
Query: 110 CPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCK-DCGNGCQG 168
C + ++ DQG+C + W + + C+ +G ++S+ + +C K + + C
Sbjct: 19 CISNLQVEDQGNCDTSWIFASKYHLETIRCM--KGYEPTKISALYVANCYKGEHKDRCDE 76
Query: 169 GFHGKAWKYWVTTGIVSGGTYASKQGCRPYEI-----PC----ERYMN---GSHSSCQDN 216
G + I+ + + PY C + +MN N
Sbjct: 77 GSSPMEF-----LQIIEDYGFLPAESNYPYNYVKVGEQCPKVEDHWMNLWDNGKILHNKN 131
Query: 217 EPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMI 276
EPN+ + GY +YE + R ++ A + I E+ G V I A+ +
Sbjct: 132 EPNSLD-----GKGY-TAYESE----RFHDNMDAFVKIIKTEVMNKGSVIA--YIKAENV 179
Query: 277 L---YKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLF 333
+ + K++ G +HA+ I+G+G EG YW+V NS+ WG+ G F
Sbjct: 180 MGYEFSGKKVKNLCGDDTADHAVNIVGYGNYVNSEGEKK--SYWIVRNSWGPYWGDEGYF 237
Query: 334 RI 335
++
Sbjct: 238 KV 239
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 426 KHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 477
K++ G +HA+ I+G+G EG YW+V NS+ WG+ G F++
Sbjct: 190 KNLCGDDTADHAVNIVGYGNYVNSEGEKK--SYWIVRNSWGPYWGDEGYFKV 239
>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
pdb|3CH3|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
Length = 265
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/242 (21%), Positives = 98/242 (40%), Gaps = 37/242 (15%)
Query: 110 CPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCK-DCGNGCQG 168
C + ++ DQG+C + W + + C+ +G ++S+ + +C K + + C
Sbjct: 18 CISNLQVEDQGNCDTSWIFASKYHLETIRCM--KGYEPTKISALYVANCYKGEHKDRCDE 75
Query: 169 GFHGKAWKYWVTTGIVSGGTYASKQGCRPYEI-----PC----ERYMN---GSHSSCQDN 216
G + I+ + + PY C + +MN N
Sbjct: 76 GSSPMEF-----LQIIEDYGFLPAESNYPYNYVKVGEQCPKVEDHWMNLWDNGKILHNKN 130
Query: 217 EPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMI 276
EPN+ + GY +YE + R ++ A + I E+ G V I A+ +
Sbjct: 131 EPNSLD-----GKGY-TAYESE----RFHDNMDAFVKIIKTEVMNKGSVIA--YIKAENV 178
Query: 277 L---YKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLF 333
+ + +++ G +HA+ I+G+G EG YW+V NS+ WG+ G F
Sbjct: 179 MGYEFSGKKVQNLCGDDTADHAVNIVGYGNYVNSEGEKK--SYWIVRNSWGPYWGDEGYF 236
Query: 334 RI 335
++
Sbjct: 237 KV 238
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 426 KHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 477
+++ G +HA+ I+G+G EG YW+V NS+ WG+ G F++
Sbjct: 189 QNLCGDDTADHAVNIVGYGNYVNSEGEKK--SYWIVRNSWGPYWGDEGYFKV 238
>pdb|1GEC|E Chain E, Glycyl Endopeptidase-complex With
Benzyloxycarbonyl-leucine-valine- Glycine-methylene
Covalently Bound To Cysteine 25
Length = 216
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 88/242 (36%), Gaps = 52/242 (21%)
Query: 97 LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLV 156
LPE D R P ++ QG C S WA V + I + V LS +LV
Sbjct: 1 LPESVDWRAKGAVTP----VKHQGYCESCWAFSTVATVEGINKIKT--GNLVELSEQELV 54
Query: 157 SCCKDCGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDN 216
C GC G+ + +Y GI Y PY +C+ N
Sbjct: 55 DCDLQ-SYGCNRGYQSTSLQYVAQNGIHLRAKY-------PYI--------AKQQTCRAN 98
Query: 217 EPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYA--- 273
+ P+ GR+ +N E + H PV S+ + +
Sbjct: 99 QVGGPKV-------------KTNGVGRVQ----SNNEGSLLNAIAHQPV--SVVVESAGR 139
Query: 274 DMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLF 333
D YK GI++ G + +HA+ +G G S Y L+ NS+ WGENG
Sbjct: 140 DFQNYKGGIFEGSCGTKV-DHAVTAVG-------YGKSGGKGYILIKNSWGPGWGENGYI 191
Query: 334 RI 335
RI
Sbjct: 192 RI 193
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 13/93 (13%)
Query: 390 LPANEETIMREIFRHGPVEGSMTIYA---DMILYKTGIYKHVAGGPLGEHAIRIIGWGQE 446
+ +N E + H PV S+ + + D YK GI++ G + +HA+ +G
Sbjct: 113 VQSNNEGSLLNAIAHQPV--SVVVESAGRDFQNYKGGIFEGSCGTKV-DHAVTAVG---- 165
Query: 447 PLGEGTSSVVKYWLVANSFNTNWGENGLFRIVR 479
G S Y L+ NS+ WGENG RI R
Sbjct: 166 ---YGKSGGKGYILIKNSWGPGWGENGYIRIRR 195
>pdb|1ICF|B Chain B, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|D Chain D, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1MHW|C Chain C, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|D Chain D, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 42
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 457 KYWLVANSFNTNWGENGLFRIVRG-QNECGIEADITAGLPKI 497
KYWLV NS+ WG G ++ + +N CGI + A P +
Sbjct: 3 KYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIAS--AASYPTV 42
>pdb|2EKL|A Chain A, Structure Of St1218 Protein From Sulfolobus Tokodaii
Length = 313
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 265 VEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQ 303
+ + +Y M L K+GI+K + G L I I+G+G+
Sbjct: 114 IAAARKMYTSMALAKSGIFKKIEGLELAGKTIGIVGFGR 152
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 407 VEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQ 445
+ + +Y M L K+GI+K + G L I I+G+G+
Sbjct: 114 IAAARKMYTSMALAKSGIFKKIEGLELAGKTIGIVGFGR 152
>pdb|1QLW|A Chain A, The Atomic Resolution Structure Of A Novel Bacterial
Esterase
pdb|1QLW|B Chain B, The Atomic Resolution Structure Of A Novel Bacterial
Esterase
pdb|2WKW|A Chain A, Alcaligenes Esterase Complexed With Product Analogue
pdb|2WKW|B Chain B, Alcaligenes Esterase Complexed With Product Analogue
Length = 328
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
Query: 27 NGVFCDLSKAFDRVDHSILLPK-----LPFYGAEKNALSKLTLSELEMRMGVHPDSKLPQ 81
N +LSK ++D ++LL PF A N + +E P+ P
Sbjct: 184 NPTVANLSKLAIKLDGTVLLSHSQSGIYPFQTAAMNPKGITAIVSVEPGECPKPEDVKPL 243
Query: 82 NRLPLLVQLSDPLEELPE 99
+P+LV D +EE P
Sbjct: 244 TSIPVLVVFGDHIEEFPR 261
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,537,937
Number of Sequences: 62578
Number of extensions: 811306
Number of successful extensions: 1950
Number of sequences better than 100.0: 114
Number of HSP's better than 100.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1414
Number of HSP's gapped (non-prelim): 284
length of query: 524
length of database: 14,973,337
effective HSP length: 103
effective length of query: 421
effective length of database: 8,527,803
effective search space: 3590205063
effective search space used: 3590205063
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)