RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1664
(524 letters)
>gnl|CDD|239111 cd02620, Peptidase_C1A_CathepsinB, Cathepsin B group; composed of
cathepsin B and similar proteins, including
tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin
B is a lysosomal papain-like cysteine peptidase which is
expressed in all tissues and functions primarily as an
exopeptidase through its carboxydipeptidyl activity.
Together with other cathepsins, it is involved in the
degradation of proteins, proenzyme activation, Ag
processing, metabolism and apoptosis. Cathepsin B has
been implicated in a number of human diseases such as
cancer, rheumatoid arthritis, osteoporosis and
Alzheimer's disease. The unique carboxydipeptidyl
activity of cathepsin B is attributed to the presence of
an occluding loop in its active site which favors the
binding of the C-termini of substrate proteins. Some
members of this group do not possess the occluding loop.
TIN-Ag is an extracellular matrix basement protein which
was originally identified as a target Ag involved in
anti-tubular basement membrane antibody-mediated
interstitial nephritis. It plays a role in renal
tubulogenesis and is defective in hereditary
tubulointerstitial disorders. TIN-Ag is exclusively
expressed in kidney tissues. .
Length = 236
Score = 319 bits (821), Expect = e-107
Identities = 121/238 (50%), Positives = 155/238 (65%), Gaps = 18/238 (7%)
Query: 98 PEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVS 157
PE FDAR WP C +I EIRDQG+CGS WA AVEA SDR+CI S GK +V LS+ DL+S
Sbjct: 1 PESFDAREKWPNCISIGEIRDQGNCGSCWAFSAVEAFSDRLCIQSNGKENVLLSAQDLLS 60
Query: 158 CCKDCGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNE 217
CC CG+GC GG+ AWKY TTG+V+G GC+PY IP G H
Sbjct: 61 CCSGCGDGCNGGYPDAAWKYLTTTGVVTG-------GCQPYTIP----PCGHHPEGPPPC 109
Query: 218 PNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMIL 277
TP C KCQ G + +YE+D + G+ AYS+P++E IM+EI +GPV+ + T+Y D +
Sbjct: 110 CGTPYCTPKCQDGCEKTYEEDKHKGKSAYSVPSDETDIMKEIMTNGPVQAAFTVYEDFLY 169
Query: 278 YKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
YK+G+Y+H +G LG HA++IIGW G + V YWL ANS+ T+WGENG FRI
Sbjct: 170 YKSGVYQHTSGKQLGGHAVKIIGW-------GVENGVPYWLAANSWGTDWGENGYFRI 220
Score = 202 bits (517), Expect = 5e-62
Identities = 77/168 (45%), Positives = 107/168 (63%), Gaps = 13/168 (7%)
Query: 327 WGENGLFRIGCRPYEIP-CERYMNGSRSSCQANEPNTPECIRKCQPGYDVSYEDDLNFGR 385
G+ GC+PY IP C + G C TP C KCQ G + +YE+D + G+
Sbjct: 81 LTTTGVVTGGCQPYTIPPCGHHPEGPPPCC-----GTPYCTPKCQDGCEKTYEEDKHKGK 135
Query: 386 IAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQ 445
AYS+P++E IM+EI +GPV+ + T+Y D + YK+G+Y+H +G LG HA++IIGW
Sbjct: 136 SAYSVPSDETDIMKEIMTNGPVQAAFTVYEDFLYYKSGVYQHTSGKQLGGHAVKIIGW-- 193
Query: 446 EPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITAG 493
G + V YWL ANS+ T+WGENG FRI+RG NECGIE+++ AG
Sbjct: 194 -----GVENGVPYWLAANSWGTDWGENGYFRILRGSNECGIESEVVAG 236
>gnl|CDD|215726 pfam00112, Peptidase_C1, Papain family cysteine protease.
Length = 213
Score = 186 bits (475), Expect = 4e-56
Identities = 79/241 (32%), Positives = 111/241 (46%), Gaps = 47/241 (19%)
Query: 97 LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLV 156
LPE FD R + ++DQG CGS WA AV A+ R CI + + V LS LV
Sbjct: 1 LPESFDWREKGA----VTPVKDQGQCGSCWAFSAVGALEGRYCIKT--GKLVSLSEQQLV 54
Query: 157 SCCKDCGNGCQGGFHGKAWKYWV-TTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQD 215
C NGC GG A++Y GIV+ Y PY +C+
Sbjct: 55 DCDTGN-NGCNGGLPDNAFEYIKKNGGIVTESDY-------PYT--------AHDGTCKF 98
Query: 216 NEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYAD- 274
+ N Y +G + Y+ +EE + + ++GPV ++ Y D
Sbjct: 99 KKSN-------------SKYAKIKGYGDVPYN---DEEALQAALAKNGPVSVAIDAYEDD 142
Query: 275 MILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFR 334
LYK+G+YKH +HA+ I+G+ GT + V YW+V NS+ T+WGENG FR
Sbjct: 143 FQLYKSGVYKHTECSGELDHAVLIVGY-------GTENGVPYWIVKNSWGTDWGENGYFR 195
Query: 335 I 335
I
Sbjct: 196 I 196
Score = 122 bits (308), Expect = 4e-32
Identities = 46/133 (34%), Positives = 70/133 (52%), Gaps = 14/133 (10%)
Query: 363 PECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYAD-MILYK 421
C K +G + Y+ +EE + + ++GPV ++ Y D LYK
Sbjct: 94 GTCKFKKSNSKYAK---IKGYGDVPYN---DEEALQAALAKNGPVSVAIDAYEDDFQLYK 147
Query: 422 TGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQ 481
+G+YKH +HA+ I+G+G T + V YW+V NS+ T+WGENG FRI RG
Sbjct: 148 SGVYKHTECSGELDHAVLIVGYG-------TENGVPYWIVKNSWGTDWGENGYFRIARGV 200
Query: 482 NECGIEADITAGL 494
NECGI ++ + +
Sbjct: 201 NECGIASEASYPI 213
>gnl|CDD|239068 cd02248, Peptidase_C1A, Peptidase C1A subfamily (MEROPS database
nomenclature); composed of cysteine peptidases (CPs)
similar to papain, including the mammalian CPs
(cathepsins B, C, F, H, L, K, O, S, V, X and W). Papain
is an endopeptidase with specific substrate preferences,
primarily for bulky hydrophobic or aromatic residues at
the S2 subsite, a hydrophobic pocket in papain that
accommodates the P2 sidechain of the substrate (the
second residue away from the scissile bond). Most
members of the papain subfamily are endopeptidases. Some
exceptions to this rule can be explained by specific
details of the catalytic domains like the occluding loop
in cathepsin B which confers an additional
carboxydipeptidyl activity and the mini-chain of
cathepsin H resulting in an N-terminal exopeptidase
activity. Papain-like CPs have different functions in
various organisms. Plant CPs are used to mobilize
storage proteins in seeds. Parasitic CPs act
extracellularly to help invade tissues and cells, to
hatch or to evade the host immune system. Mammalian CPs
are primarily lysosomal enzymes with the exception of
cathepsin W, which is retained in the endoplasmic
reticulum. They are responsible for protein degradation
in the lysosome. Papain-like CPs are synthesized as
inactive proenzymes with N-terminal propeptide regions,
which are removed upon activation. In addition to its
inhibitory role, the propeptide is required for proper
folding of the newly synthesized enzyme and its
stabilization in denaturing pH conditions. Residues
within the propeptide region also play a role in the
transport of the proenzyme to lysosomes or acidified
vesicles. Also included in this subfamily are proteins
classified as non-peptidase homologs, which lack
peptidase activity or have missing active site residues.
Length = 210
Score = 135 bits (343), Expect = 4e-37
Identities = 63/222 (28%), Positives = 88/222 (39%), Gaps = 42/222 (18%)
Query: 115 EIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKA 174
++DQGSCGS WA V A+ I + V LS LV C NGC GG A
Sbjct: 14 PVKDQGSCGSCWAFSTVGALEGAYAIK--TGKLVSLSEQQLVDCSTSGNNGCNGGNPDNA 71
Query: 175 WKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVS 234
++Y G+ S Y PY G +C+ N
Sbjct: 72 FEYVKNGGLASESDY-------PYT--------GKDGTCKYNSSKVG--------AKITG 108
Query: 235 YEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGE- 293
Y + P +EE + + +GPV ++ + YK GIY
Sbjct: 109 Y---------SNVPPGDEEALKAALANYGPVSVAIDASSSFQFYKGGIYSGPCCSNTNLN 159
Query: 294 HAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
HA+ ++G+G T + V YW+V NS+ T+WGE G RI
Sbjct: 160 HAVLLVGYG-------TENGVDYWIVKNSWGTSWGEKGYIRI 194
Score = 90.4 bits (225), Expect = 8e-21
Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 8/102 (7%)
Query: 387 AYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGE-HAIRIIGWGQ 445
+ P +EE + + +GPV ++ + YK GIY HA+ ++G+G
Sbjct: 110 SNVPPGDEEALKAALANYGPVSVAIDASSSFQFYKGGIYSGPCCSNTNLNHAVLLVGYG- 168
Query: 446 EPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIE 487
T + V YW+V NS+ T+WGE G RI RG N CGI
Sbjct: 169 ------TENGVDYWIVKNSWGTSWGEKGYIRIARGSNLCGIA 204
>gnl|CDD|239149 cd02698, Peptidase_C1A_CathepsinX, Cathepsin X; the only
papain-like lysosomal cysteine peptidase exhibiting
carboxymonopeptidase activity. It can also act as a
carboxydipeptidase, like cathepsin B, but has been shown
to preferentially cleave substrates through a
monopeptidyl carboxypeptidase pathway. The propeptide
region of cathepsin X, the shortest among papain-like
peptidases, is covalently attached to the active site
cysteine in the inactive form of the enzyme. Little is
known about the biological function of cathepsin X. Some
studies point to a role in early tumorigenesis. A more
recent study indicates that cathepsin X expression is
restricted to immune cells suggesting a role in
phagocytosis and the regulation of the immune response.
Length = 239
Score = 109 bits (273), Expect = 4e-27
Identities = 68/221 (30%), Positives = 94/221 (42%), Gaps = 40/221 (18%)
Query: 122 CGSGWALGAVEAMSDRVCIASRGKR-HVRLSSDDLVSCCKDCGNG--CQGGFHGKAWKYW 178
CGS WA G+ A++DR+ IA +G V LS ++ DC G C GG G ++Y
Sbjct: 28 CGSCWAHGSTSALADRINIARKGAWPSVYLSVQVVI----DCAGGGSCHGGDPGGVYEYA 83
Query: 179 VTTGIVSGGTYASKQGCRPY---EIPCERYMNGSHSSCQDNEPNTPEC-IRKCQPGYDVS 234
GI + C PY + C + +C N EC K Y VS
Sbjct: 84 HKHGIPD-------ETCNPYQAKDGECNPF--NRCGTC--NPFG--ECFAIKNYTLYFVS 130
Query: 235 YEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEH 294
Y + + +M EI+ GP+ + + Y G+YK PL H
Sbjct: 131 ----------DYGSVSGRDKMMAEIYARGPISCGIMATEALENYTGGVYKEYVQDPLINH 180
Query: 295 AIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
I + GWG + G V+YW+V NS+ WGE G FRI
Sbjct: 181 IISVAGWGVDENG------VEYWIVRNSWGEPWGERGWFRI 215
Score = 75.1 bits (185), Expect = 2e-15
Identities = 36/115 (31%), Positives = 50/115 (43%), Gaps = 11/115 (9%)
Query: 387 AYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQE 446
Y + + +M EI+ GP+ + + Y G+YK PL H I + GWG +
Sbjct: 131 DYGSVSGRDKMMAEIYARGPISCGIMATEALENYTGGVYKEYVQDPLINHIISVAGWGVD 190
Query: 447 PLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNEC-----GIEADITAGLPK 496
G V+YW+V NS+ WGE G FRIV + IE D P
Sbjct: 191 ENG------VEYWIVRNSWGEPWGERGWFRIVTSSYKGARYNLAIEEDCAWADPI 239
>gnl|CDD|239112 cd02621, Peptidase_C1A_CathepsinC, Cathepsin C; also known as
Dipeptidyl Peptidase I (DPPI), an atypical papain-like
cysteine peptidase with chloride dependency and
dipeptidyl aminopeptidase activity, resulting from its
tetrameric structure which limits substrate access. Each
subunit of the tetramer is composed of three peptides:
the heavy and light chains, which together adopts the
papain fold and forms the catalytic domain; and the
residual propeptide region, which forms a beta barrel
and points towards the substrate's N-terminus. The
subunit composition is the result of the unique
characteristic of procathepsin C maturation involving
the cleavage of the catalytic domain and the
non-autocatalytic excision of an activation peptide
within its propeptide region. By removing N-terminal
dipeptide extensions, cathepsin C activates granule
serine peptidases (granzymes) involved in cell-mediated
apoptosis, inflammation and tissue remodelling.
Loss-of-function mutations in cathepsin C are associated
with Papillon-Lefevre and Haim-Munk syndromes, rare
diseases characterized by hyperkeratosis and early-onset
periodontitis. Cathepsin C is widely expressed in many
tissues with high levels in lung, kidney and placenta.
It is also highly expressed in cytotoxic lymphocytes and
mature myeloid cells.
Length = 243
Score = 107 bits (270), Expect = 1e-26
Identities = 72/257 (28%), Positives = 113/257 (43%), Gaps = 51/257 (19%)
Query: 97 LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHV----RLSS 152
LP+ FD + +R+QG CGS +A +V A+ R+ IAS + LS
Sbjct: 1 LPKSFDWGDVNNGFNYVSPVRNQGGCGSCYAFASVYALEARIMIASNKTDPLGQQPILSP 60
Query: 153 DDLVSCCKDCGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSS 212
++SC + GC GGF K+ GIV+ + PY
Sbjct: 61 QHVLSCSQ-YSQGCDGGFPFLVGKFAEDFGIVT-------EDYFPYT-------ADDDRP 105
Query: 213 CQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPA-NEETIMREIFRHGPVEGSMTI 271
C+ + EC R Y S ++ + NE+ + EI+R+GP+ + +
Sbjct: 106 CK---ASPSECRR-----YYFS-----DYNYVGGCYGCTNEDEMKWEIYRNGPIVVAFEV 152
Query: 272 YADMILYKTGIYKH-----VAGGP--------LGEHAIRIIGWGQEPLGEGTSSVVKYWL 318
Y+D YK G+Y H V+ G L HA+ ++GWG++ + KYW+
Sbjct: 153 YSDFDFYKEGVYHHTDNDEVSDGDNDNFNPFELTNHAVLLVGWGEDEI-----KGEKYWI 207
Query: 319 VANSFNTNWGENGLFRI 335
V NS+ ++WGE G F+I
Sbjct: 208 VKNSWGSSWGEKGYFKI 224
Score = 99.0 bits (247), Expect = 2e-23
Identities = 42/109 (38%), Positives = 64/109 (58%), Gaps = 18/109 (16%)
Query: 393 NEETIMREIFRHGPVEGSMTIYADMILYKTGIYKH-----VAGGP--------LGEHAIR 439
NE+ + EI+R+GP+ + +Y+D YK G+Y H V+ G L HA+
Sbjct: 132 NEDEMKWEIYRNGPIVVAFEVYSDFDFYKEGVYHHTDNDEVSDGDNDNFNPFELTNHAVL 191
Query: 440 IIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEA 488
++GWG++ + KYW+V NS+ ++WGE G F+I RG NECGIE+
Sbjct: 192 LVGWGEDEI-----KGEKYWIVKNSWGSSWGEKGYFKIRRGTNECGIES 235
>gnl|CDD|214761 smart00645, Pept_C1, Papain family cysteine protease.
Length = 175
Score = 103 bits (259), Expect = 7e-26
Identities = 39/134 (29%), Positives = 51/134 (38%), Gaps = 25/134 (18%)
Query: 97 LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLV 156
LPE FD R T ++DQG CGS WA A A+ R CI + + V LS LV
Sbjct: 1 LPESFDWRKKG--AVTP--VKDQGQCGSCWAFSATGALEGRYCIKT--GKLVSLSEQQLV 54
Query: 157 SCCKDCGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGS------- 209
C GC GG A++Y G + + C PY ++ S
Sbjct: 55 DCSGGGNCGCNGGLPDNAFEYIKKNGGLET------ESCYPYTGSV--AIDASDFQFYKS 106
Query: 210 ----HSSCQDNEPN 219
H C +
Sbjct: 107 GIYDHPGCGSGTLD 120
Score = 92.3 bits (230), Expect = 8e-22
Identities = 41/91 (45%), Positives = 54/91 (59%), Gaps = 8/91 (8%)
Query: 406 PVEGSMTI-YADMILYKTGIYKHVA-GGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVAN 463
P GS+ I +D YK+GIY H G +HA+ I+G+G E YW+V N
Sbjct: 89 PYTGSVAIDASDFQFYKSGIYDHPGCGSGTLDHAVLIVGYGTEVENG-----KDYWIVKN 143
Query: 464 SFNTNWGENGLFRIVRGQ-NECGIEADITAG 493
S+ T+WGENG FRI RG+ NECGIEA + +
Sbjct: 144 SWGTDWGENGYFRIARGKNNECGIEASVASY 174
Score = 75.3 bits (186), Expect = 7e-16
Identities = 32/74 (43%), Positives = 42/74 (56%), Gaps = 7/74 (9%)
Query: 264 PVEGSMTI-YADMILYKTGIYKHVA-GGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVAN 321
P GS+ I +D YK+GIY H G +HA+ I+G+G E YW+V N
Sbjct: 89 PYTGSVAIDASDFQFYKSGIYDHPGCGSGTLDHAVLIVGYGTEVENG-----KDYWIVKN 143
Query: 322 SFNTNWGENGLFRI 335
S+ T+WGENG FRI
Sbjct: 144 SWGTDWGENGYFRI 157
>gnl|CDD|239110 cd02619, Peptidase_C1, C1 Peptidase family (MEROPS database
nomenclature), also referred to as the papain family;
composed of two subfamilies of cysteine peptidases
(CPs), C1A (papain) and C1B (bleomycin hydrolase).
Papain-like enzymes are mostly endopeptidases with some
exceptions like cathepsins B, C, H and X, which are
exopeptidases. Papain-like CPs have different functions
in various organisms. Plant CPs are used to mobilize
storage proteins in seeds while mammalian CPs are
primarily lysosomal enzymes responsible for protein
degradation in the lysosome. Papain-like CPs are
synthesized as inactive proenzymes with N-terminal
propeptide regions, which are removed upon activation.
Bleomycin hydrolase (BH) is a CP that detoxifies
bleomycin by hydrolysis of an amide group. It acts as a
carboxypeptidase on its C-terminus to convert itself
into an aminopeptidase and peptide ligase. BH is found
in all tissues in mammals as well as in many other
eukaryotes. It forms a hexameric ring barrel structure
with the active sites imbedded in the central channel.
Some members of the C1 family are proteins classified as
non-peptidase homologs which lack peptidase activity or
have missing active site residues.
Length = 223
Score = 89.9 bits (223), Expect = 2e-20
Identities = 61/246 (24%), Positives = 81/246 (32%), Gaps = 49/246 (19%)
Query: 115 EIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSC----CKDCGNGCQGGF 170
+++QGS GS WA + A+ I +V LS L C C C GG
Sbjct: 11 PVKNQGSRGSCWAFASAYALESAYRIKGGEDEYVDLSPQYLYICANDECLGINGSCDGGG 70
Query: 171 HGKAW-KYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQP 229
A K GI + PY D E E
Sbjct: 71 PLSALLKLVALKGIPP-------EEDYPYGAE------------SDGEEPKSEAALNAAK 111
Query: 230 GYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYK----- 284
Y L N E I + + GPV +Y+ K GI
Sbjct: 112 VKLKDYRRVLKN---------NIEDIKEALAKGGPVVAGFDVYSGFDRLKEGIIYEEIVY 162
Query: 285 -HVAGGPLGEHAIRIIGWG-QEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIGCRPYEI 342
G LG HA+ I+G+ G+G ++V NS+ T+WG+NG RI YE
Sbjct: 163 LLYEDGDLGGHAVVIVGYDDNYVEGKG------AFIVKNSWGTDWGDNGYGRI---SYED 213
Query: 343 PCERYM 348
E
Sbjct: 214 VYEMTF 219
Score = 57.5 bits (139), Expect = 2e-09
Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 13/92 (14%)
Query: 393 NEETIMREIFRHGPVEGSMTIYADMILYKTGIYK------HVAGGPLGEHAIRIIGWG-Q 445
N E I + + GPV +Y+ K GI G LG HA+ I+G+
Sbjct: 124 NIEDIKEALAKGGPVVAGFDVYSGFDRLKEGIIYEEIVYLLYEDGDLGGHAVVIVGYDDN 183
Query: 446 EPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 477
G+G ++V NS+ T+WG+NG RI
Sbjct: 184 YVEGKG------AFIVKNSWGTDWGDNGYGRI 209
>gnl|CDD|240244 PTZ00049, PTZ00049, cathepsin C-like protein; Provisional.
Length = 693
Score = 77.7 bits (191), Expect = 5e-15
Identities = 48/140 (34%), Positives = 67/140 (47%), Gaps = 31/140 (22%)
Query: 394 EETIMREIFRHGPVEGSMTIYADMILYKTGIY----------------KH-----VAGGP 432
E+ +M EI+R+GP+ S D Y G+Y KH + G
Sbjct: 557 EKIMMNEIYRNGPIVASFEASPDFYDYADGVYYVEDFPHARRCTVDLPKHNGVYNITGWE 616
Query: 433 LGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEA---- 488
HAI ++GWG+E E + KYW+ NS+ NWG+ G F+I+RG+N GIE+
Sbjct: 617 KVNHAIVLVGWGEE---EINGKLYKYWIGRNSWGKNWGKEGYFKIIRGKNFSGIESQSLF 673
Query: 489 ---DITAGLPKIGLEIDSNE 505
D + G KI LE NE
Sbjct: 674 IEPDFSRGAGKILLEKLENE 693
Score = 74.6 bits (183), Expect = 4e-14
Identities = 71/287 (24%), Positives = 112/287 (39%), Gaps = 51/287 (17%)
Query: 94 LEELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSS- 152
++ELP+ F + ++ +Q CGS + + A R+ IA + +
Sbjct: 378 IDELPKNFTWGDPFNNNTREYDVTNQLLCGSCYIASQMYAFKRRIEIALTKNLDKKYLNN 437
Query: 153 -DDLVS-----CCKDCGNGCQGGFHGKAWKYWVTTGIVSGGTY---ASKQGCRPYEIPCE 203
DDL+S C GC GGF K GI + A++Q C PY++ +
Sbjct: 438 FDDLLSIQTVLSCSFYDQGCNGGFPYLVSKMAKLQGIPLDKVFPYTATEQTC-PYQV--D 494
Query: 204 RYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYE----DDLN------FGRIAYSLPAN-- 251
+ N + S + N + Q +E + + I N
Sbjct: 495 QSANSMNGSANLRQINAVFFSSETQSDMHADFEAPISSEPARWYAKDYNYIGGCYGCNQC 554
Query: 252 --EETIMREIFRHGPVEGSMTIYADMILYKTGIY----------------KH-----VAG 288
E+ +M EI+R+GP+ S D Y G+Y KH + G
Sbjct: 555 NGEKIMMNEIYRNGPIVASFEASPDFYDYADGVYYVEDFPHARRCTVDLPKHNGVYNITG 614
Query: 289 GPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
HAI ++GWG+E E + KYW+ NS+ NWG+ G F+I
Sbjct: 615 WEKVNHAIVLVGWGEE---EINGKLYKYWIGRNSWGKNWGKEGYFKI 658
>gnl|CDD|240232 PTZ00021, PTZ00021, falcipain-2; Provisional.
Length = 489
Score = 76.7 bits (189), Expect = 7e-15
Identities = 72/299 (24%), Positives = 118/299 (39%), Gaps = 58/299 (19%)
Query: 52 YGAEKNALSKLTLSELEMRMGVHPDSKLPQNRLPLLVQLS--DPLEELPEG---FD-ARI 105
Y N L+ E + + N ++ D +++ FD A+
Sbjct: 211 YKKGMNRFGDLSFEEFKKKYLTLKSFDFKSNGKKSPRVINYDDVIKKYKPKDATFDHAKY 270
Query: 106 NWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNG 165
+W + ++DQ +CGS WA V + + I R V LS +LV C NG
Sbjct: 271 DWRLHNGVTPVKDQKNCGSCWAFSTVGVVESQYAI--RKNELVSLSEQELVD-CSFKNNG 327
Query: 166 CQGGFHGKAWKYWVTTG-IVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECI 224
C GG A++ + G + S Y PY + P I
Sbjct: 328 CYGGLIPNAFEDMIELGGLCSEDDY-------PY---------------VSDTPELCN-I 364
Query: 225 RKCQPGYDV-SYEDDLNFGRIAYSLPANEETIMREIFRH-GPVEGSMTIYADMILYKTGI 282
+C+ Y + SY S+P ++ +E R GP+ S+ + D YK GI
Sbjct: 365 DRCKEKYKIKSY----------VSIPEDK---FKEAIRFLGPISVSIAVSDDFAFYKGGI 411
Query: 283 YKHVAGGPLGE---HAIRIIGWGQEPLGEGTSSVVK---YWLVANSFNTNWGENGLFRI 335
+ G GE HA+ ++G+G E + + ++ Y+++ NS+ +WGE G RI
Sbjct: 412 FD----GECGEEPNHAVILVGYGMEEIYNSDTKKMEKRYYYIIKNSWGESWGEKGFIRI 466
Score = 44.4 bits (105), Expect = 1e-04
Identities = 38/127 (29%), Positives = 63/127 (49%), Gaps = 27/127 (21%)
Query: 361 NTPE-C-IRKCQPGYDV-SYEDDLNFGRIAYSLPANEETIMREIFRH-GPVEGSMTIYAD 416
+TPE C I +C+ Y + SY S+P ++ +E R GP+ S+ + D
Sbjct: 357 DTPELCNIDRCKEKYKIKSY----------VSIPEDK---FKEAIRFLGPISVSIAVSDD 403
Query: 417 MILYKTGIYKHVAGGPLGE---HAIRIIGWGQEPLGEGTSSVVK---YWLVANSFNTNWG 470
YK GI+ G GE HA+ ++G+G E + + ++ Y+++ NS+ +WG
Sbjct: 404 FAFYKGGIFD----GECGEEPNHAVILVGYGMEEIYNSDTKKMEKRYYYIIKNSWGESWG 459
Query: 471 ENGLFRI 477
E G RI
Sbjct: 460 EKGFIRI 466
>gnl|CDD|185513 PTZ00203, PTZ00203, cathepsin L protease; Provisional.
Length = 348
Score = 73.6 bits (180), Expect = 3e-14
Identities = 64/258 (24%), Positives = 110/258 (42%), Gaps = 51/258 (19%)
Query: 103 ARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDC 162
++W + +++QG+CGS WA AV + + +A G + VRLS LVSC
Sbjct: 128 DAVDWREKGAVTPVKNQGACGSCWAFSAVGNIESQWAVA--GHKLVRLSEQQLVSC-DHV 184
Query: 163 GNGCQGGFHGKAWKYWV---TTGIV-SGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEP 218
NGC GG +A++ WV G V + +Y G NG C ++
Sbjct: 185 DNGCGGGLMLQAFE-WVLRNMNGTVFTEKSYPYVSG------------NGDVPECSNSS- 230
Query: 219 NTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILY 278
+ PG + G + S+ ++E + + ++GP+ ++ + M Y
Sbjct: 231 -------ELAPGARID-------GYV--SMESSERVMAAWLAKNGPISIAVDASSFMS-Y 273
Query: 279 KTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI--- 335
+G+ G L H + ++G+ GE V YW++ NS+ +WGE G R+
Sbjct: 274 HSGVLTSCIGEQL-NHGVLLVGYNMT--GE-----VPYWVIKNSWGEDWGEKGYVRVTMG 325
Query: 336 --GCRPYEIPCERYMNGS 351
C P +++ S
Sbjct: 326 VNACLLTGYPVSVHVSQS 343
Score = 50.5 bits (120), Expect = 1e-06
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 9/96 (9%)
Query: 389 SLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPL 448
S+ ++E + + ++GP+ ++ + M Y +G+ G L H + ++G+
Sbjct: 243 SMESSERVMAAWLAKNGPISIAVDASSFMS-YHSGVLTSCIGEQL-NHGVLLVGYNMT-- 298
Query: 449 GEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNEC 484
GE V YW++ NS+ +WGE G R+ G N C
Sbjct: 299 GE-----VPYWVIKNSWGEDWGEKGYVRVTMGVNAC 329
>gnl|CDD|240310 PTZ00200, PTZ00200, cysteine proteinase; Provisional.
Length = 448
Score = 72.0 bits (177), Expect = 2e-13
Identities = 75/318 (23%), Positives = 123/318 (38%), Gaps = 78/318 (24%)
Query: 30 FCDLS-KAFDRVDHSILLPKLPFYGAEKNALSKLTLSELEMRMGVHPD--SKLPQNRLPL 86
F DL+ + F + L P + S ++ + R +P L +
Sbjct: 173 FSDLTEEEFRK-----LFPVIKVPPKSN---STSHNNDFKARHVSNPTYLKNL-KKAKNT 223
Query: 87 LVQLSDPLEELPEGFDARINWPYCPTIQEIRDQGS-CGSGWA---LGAVEAMSDRVCIAS 142
+ DP + EG D W + +++DQG CGS WA +G+VE++
Sbjct: 224 DEDVKDPSKITGEGLD----WRRADAVTKVKDQGLNCGSCWAFSSVGSVESL-----YKI 274
Query: 143 RGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKAWKYWVTTGIV--SGGTYASKQG-CRPYE 199
+ V LS +LV+C GC GG+ A +Y G+ S Y +K G C
Sbjct: 275 YRDKSVDLSEQELVNCDTKS-QGCSGGYPDTALEYVKNKGLSSSSDVPYLAKDGKCVVSS 333
Query: 200 IPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREI 259
+ Y++ + K G DV N+ ++
Sbjct: 334 TK-KVYIDSYL-------------VAK---GKDV----------------LNKSLVI--- 357
Query: 260 FRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVK--YW 317
P + + +++ YK+G+Y G L HA+ ++G EG K YW
Sbjct: 358 ---SPTVVYIAVSRELLKYKSGVYNGECGKSL-NHAVLLVG-------EGYDEKTKKRYW 406
Query: 318 LVANSFNTNWGENGLFRI 335
++ NS+ T+WGENG R+
Sbjct: 407 IIKNSWGTDWGENGYMRL 424
Score = 58.9 bits (143), Expect = 3e-09
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 13/76 (17%)
Query: 416 DMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVK--YWLVANSFNTNWGENG 473
+++ YK+G+Y G L HA+ ++G EG K YW++ NS+ T+WGENG
Sbjct: 369 ELLKYKSGVYNGECGKSL-NHAVLLVG-------EGYDEKTKKRYWIIKNSWGTDWGENG 420
Query: 474 LFRIVR---GQNECGI 486
R+ R G ++CGI
Sbjct: 421 YMRLERTNEGTDKCGI 436
>gnl|CDD|240381 PTZ00364, PTZ00364, dipeptidyl-peptidase I precursor; Provisional.
Length = 548
Score = 59.5 bits (144), Expect = 2e-09
Identities = 62/274 (22%), Positives = 100/274 (36%), Gaps = 59/274 (21%)
Query: 89 QLSDPLEELPEGFDAR-INW-PYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKR 146
QL DP P + + + P C S + A+ AM RV +AS
Sbjct: 200 QLGDPP---PAAWSWGDVGGASFLPAAPPASPGRGCNSSYVEAALAAMMARVMVASNRTD 256
Query: 147 HV----RLSSDDLVSCCKDCGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPC 202
+ LS+ ++ C + G GC GGF + K+ T GI++ +Y IP
Sbjct: 257 PLGQQTFLSARHVLDCSQ-YGQGCAGGFPEEVGKFAETFGILTTDSYY---------IP- 305
Query: 203 ERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRH 262
Y +G + +P + + G ++ +E I+ EI+RH
Sbjct: 306 --YDSGD---------GVERACKTRRPSRRYYFTNYGPLGGYYGAVTDPDE-IIWEIYRH 353
Query: 263 GPVEGSMTIYADMILYKTGIYKHVAGGPLGE-------------------HAIRIIGWGQ 303
GPV S+ +D + V L + H + IIGWG
Sbjct: 354 GPVPASVYANSDWYNCDENSTEDVRYVSLDDYSTASADRPLRHYFASNVNHTVLIIGWGT 413
Query: 304 EPLGEGTSSVVKYWLVANSFNT--NWGENGLFRI 335
+ G YWLV + + + +W + G +I
Sbjct: 414 DENG------GDYWLVLDPWGSRRSWCDGGTRKI 441
Score = 56.4 bits (136), Expect = 2e-08
Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 27/118 (22%)
Query: 395 ETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGE------------------- 435
+ I+ EI+RHGPV S+ +D + V L +
Sbjct: 344 DEIIWEIYRHGPVPASVYANSDWYNCDENSTEDVRYVSLDDYSTASADRPLRHYFASNVN 403
Query: 436 HAIRIIGWGQEPLGEGTSSVVKYWLVANSFNT--NWGENGLFRIVRGQNECGIEADIT 491
H + IIGWG + G YWLV + + + +W + G +I RG N IE+++
Sbjct: 404 HTVLIIGWGTDENG------GDYWLVLDPWGSRRSWCDGGTRKIARGVNAYNIESEVV 455
>gnl|CDD|238827 cd01650, RT_nLTR_like, RT_nLTR: Non-LTR (long terminal repeat)
retrotransposon and non-LTR retrovirus reverse
transcriptase (RT). This subfamily contains both non-LTR
retrotransposons and non-LTR retrovirus RTs. RTs
catalyze the conversion of single-stranded RNA into
double-stranded DNA for integration into host
chromosomes. RT is a multifunctional enzyme with
RNA-directed DNA polymerase, DNA directed DNA polymerase
and ribonuclease hybrid (RNase H) activities.
Length = 220
Score = 48.8 bits (117), Expect = 2e-06
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 2 GKSTADAVATFLKDLDLSQSSRNHSNGVFCDLSKAFDRVDHSILLPKL 49
G+ST DA+ + ++ ++ + VF D KAFD VDH LL L
Sbjct: 58 GRSTTDAILLLREVIEKAKEKKKSLVLVFLDFEKAFDSVDHEFLLKAL 105
>gnl|CDD|185641 PTZ00462, PTZ00462, Serine-repeat antigen protein; Provisional.
Length = 1004
Score = 38.5 bits (89), Expect = 0.009
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 284 KHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
+++ G +HA+ I+G+G E YW+V NS+ WG+ G F++
Sbjct: 713 QNLCGDDTADHAVNIVGYGNYINDEDEKK--SYWIVRNSWGKYWGDEGYFKV 762
Score = 38.5 bits (89), Expect = 0.009
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 426 KHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 477
+++ G +HA+ I+G+G E YW+V NS+ WG+ G F++
Sbjct: 713 QNLCGDDTADHAVNIVGYGNYINDEDEKK--SYWIVRNSWGKYWGDEGYFKV 762
>gnl|CDD|227207 COG4870, COG4870, Cysteine protease [Posttranslational
modification, protein turnover, chaperones].
Length = 372
Score = 36.0 bits (83), Expect = 0.039
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 14/57 (24%)
Query: 292 GEHAIRIIGW-------GQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIGCRPYE 341
HA+ I+G+ + G + +++ NS+ TNWGENG F I Y
Sbjct: 264 WGHAVLIVGYDDSFDINNFKYGPPGDGA----FIIKNSWGTNWGENGYFWI---SYY 313
Score = 35.2 bits (81), Expect = 0.083
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 11/51 (21%)
Query: 434 GEHAIRIIGW-------GQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 477
HA+ I+G+ + G + +++ NS+ TNWGENG F I
Sbjct: 264 WGHAVLIVGYDDSFDINNFKYGPPGDGA----FIIKNSWGTNWGENGYFWI 310
>gnl|CDD|215698 pfam00078, RVT_1, Reverse transcriptase (RNA-dependent DNA
polymerase). A reverse transcriptase gene is usually
indicative of a mobile element such as a retrotransposon
or retrovirus. Reverse transcriptases occur in a variety
of mobile elements, including retrotransposons,
retroviruses, group II introns, bacterial msDNAs,
hepadnaviruses, and caulimoviruses.
Length = 194
Score = 33.5 bits (77), Expect = 0.14
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 29 VFCDLSKAFDRVDHSILLPKLPFYGAEKNALSKLTLSELEMRMGVHPDSKLPQNRLP 85
+ DL KAFD + H L L +G + + T S + + +P + LP
Sbjct: 56 LKLDLKKAFDSIPHDPLDRPLTAFGLPQRFIRWRTFS---VLVNGNPGGRYEWRGLP 109
>gnl|CDD|238828 cd01651, RT_G2_intron, RT_G2_intron: Reverse transcriptases (RTs)
with group II intron origin. RT transcribes DNA using
RNA as template. Proteins in this subfamily are found in
bacterial and mitochondrial group II introns. Their most
probable ancestor was a retrotransposable element with
both gag-like and pol-like genes. This subfamily of
proteins appears to have captured the RT sequences from
transposable elements, which lack long terminal repeats
(LTRs).
Length = 226
Score = 32.9 bits (76), Expect = 0.26
Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 11/85 (12%)
Query: 2 GKSTADAVATFLKDLDLSQSSRNHSNGVF-CDLSKAFDRVDHSILLPKLPFYGAEKN--A 58
G+S DA+ + ++ + V D+ FD +DH +LL L +K
Sbjct: 51 GRSAHDALKA------IRRNVKGGYTWVIEGDIKGFFDNIDHDLLLKILKRRIGDKRVLR 104
Query: 59 LSKLTLSELEMRMGVHPDSKL--PQ 81
L + L + G +++ PQ
Sbjct: 105 LIRKWLKAGVLEDGKLVETEKGTPQ 129
>gnl|CDD|219664 pfam07958, DUF1688, Protein of unknown function (DUF1688). A
family of uncharacterized proteins.
Length = 413
Score = 32.6 bits (75), Expect = 0.48
Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 18/82 (21%)
Query: 27 NGVFCDLSKAFDRVDHSILLPKLPFYGAEKNALSKLTLSELEMRMGVHPDSKLP--QNRL 84
+G+F +VD L +LT+ L V + L + R+
Sbjct: 139 SGLFSSDPGRPLQVD--------------AAGLKRLTVERLARGFQVSEANPLVGLEGRV 184
Query: 85 PLLVQLSDPLEELPEGF--DAR 104
LL +L + L PE F D R
Sbjct: 185 ALLRRLGEALAANPEIFGPDGR 206
>gnl|CDD|116964 pfam08384, NPP, Pro-opiomelanocortin, N-terminal region. This
family features the N-terminal peptide of
pro-opiomelanocortin (NPP). It is thought to represent
an important pituitary peptide, given its high yield
from pituitary glands, and exhibits a potent in vitro
aldosterone-stimulating activity.
Length = 45
Score = 28.9 bits (65), Expect = 0.60
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 210 HSSCQDN--EPNTPECIRKCQPG 230
HS C+D E N ECI+ C+
Sbjct: 5 HSKCRDLSSESNLLECIKLCKSD 27
>gnl|CDD|233259 TIGR01070, mutS1, DNA mismatch repair protein MutS. [DNA
metabolism, DNA replication, recombination, and repair].
Length = 840
Score = 32.1 bits (73), Expect = 0.87
Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 211 SSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVE 266
+ + + N I + G+ ++ D L G + A++ET+ E+ R P E
Sbjct: 114 ALLPERQDNLLAAIAQESNGFGLATLD-LTTGEFKVTELADKETLYAELQRLNPAE 168
Score = 30.5 bits (69), Expect = 2.4
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 366 IRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVE 408
I + G+ ++ D L G + A++ET+ E+ R P E
Sbjct: 127 IAQESNGFGLATLD-LTTGEFKVTELADKETLYAELQRLNPAE 168
>gnl|CDD|220171 pfam09307, MHC2-interact, CLIP, MHC2 interacting. Members of this
family are found in class II invariant chain-associated
peptide (CLIP), and are required for association with
class II major histocompatibility complex (MHC) in the
MHC class II processing pathway.
Length = 114
Score = 29.8 bits (67), Expect = 1.1
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 8/54 (14%)
Query: 55 EKNALSKLTLS------ELEMRMGVHPDSK--LPQNRLPLLVQLSDPLEELPEG 100
+K +SKLT + EL ++ P SK +P N +PLL+ ++ +
Sbjct: 58 QKGQISKLTKTSQNLKLELRRKLPAGPPSKMHMPMNNMPLLMDFLPLASDMDQT 111
>gnl|CDD|238445 cd00873, KU80, Ku-core domain, Ku80 subfamily; Ku80 is a subunit of
the Ku protein, which plays a key role in multiple
nuclear processes such as DNA repair, chromosome
maintenance, transcription regulation, and V(D)J
recombination. The mechanism underlying the regulation
of all the diverse functions of Ku is still unclear,
although it seems that Ku is a multifunctional protein
that works in nuclei. In mammalian cells, the Ku
heterodimer recruits the catalytic subunit of
DNA-dependent protein kinase (DNA-PK), which is
dependent on its association with the Ku70/80
heterodimer bound to DNA for its protein kinase
activity.
Length = 300
Score = 30.7 bits (70), Expect = 1.7
Identities = 19/93 (20%), Positives = 30/93 (32%), Gaps = 22/93 (23%)
Query: 7 DAVATFLKDLDLSQSSRNHSNGVFCDLSKAFDRVDHSILLPKLPFYGAEKNALSKLTLSE 66
+A+ + +DL + P L A
Sbjct: 211 EAMDDLVDSMDLDDDEEDDPEEALK---------PDETPNPVLQRI---YQA-------- 250
Query: 67 LEMRMGVHPDSKLPQNRLPLLVQLSDPLEELPE 99
L R +HPD LP L +L++ +P EE+ E
Sbjct: 251 LRHR-ALHPDEPLPP-LLQVLLRYLEPPEEVLE 281
>gnl|CDD|112645 pfam03841, SelA, L-seryl-tRNA selenium transferase.
Length = 367
Score = 29.2 bits (66), Expect = 4.9
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 61 KLTLSELEMRMGVHPDSKLPQNRLPLLVQLSDPLEEL 97
KLTL+ LE + ++ + + ++P L L+ PL+EL
Sbjct: 246 KLTLAALEATLRLYLNPEKLYEKIPTLRLLTQPLKEL 282
>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional.
Length = 489
Score = 29.4 bits (66), Expect = 5.7
Identities = 11/48 (22%), Positives = 21/48 (43%)
Query: 232 DVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYK 279
D++ D+L F + YS+ N I + + G +T + L+
Sbjct: 250 DINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFT 297
Score = 29.4 bits (66), Expect = 5.7
Identities = 11/48 (22%), Positives = 21/48 (43%)
Query: 374 DVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYK 421
D++ D+L F + YS+ N I + + G +T + L+
Sbjct: 250 DINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFT 297
>gnl|CDD|220463 pfam09900, DUF2127, Predicted membrane protein (DUF2127). This
domain, found in various hypothetical prokaryotic and
archaeal proteins, has no known function.
Length = 141
Score = 27.9 bits (63), Expect = 7.1
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 8/30 (26%)
Query: 171 HGKAWKYWVTTGIVSGGTYASKQGCRPYEI 200
GK W W I+SGG Y P+E+
Sbjct: 90 RGKRWAEWF--AILSGGIYI------PFEL 111
>gnl|CDD|232992 TIGR00474, selA, seryl-tRNA(sec) selenium transferase. In
bacteria, the incorporation of selenocysteine as the
21st amino acid, encoded by TGA, requires several
elements: SelC is the tRNA itself, SelD acts as a donor
of reduced selenium, SelA modifies a serine residue on
SelC into selenocysteine, and SelB is a
selenocysteine-specific translation elongation factor.
3-prime or 5-prime non-coding elements of mRNA have been
found as probable structures for directing
selenocysteine incorporation. This model describes SelA.
This model excludes homologs that appear to differ in
function from Frankia alni, Helicobacter pylori,
Methanococcus jannaschii and other archaea, and so on
[Protein synthesis, tRNA aminoacylation].
Length = 454
Score = 29.1 bits (66), Expect = 7.5
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 60 SKLTLSELEMRMGVHPDSKLPQNRLPLLVQLSDPLEEL 97
KLTL+ LE + ++ D + ++P L L+ EEL
Sbjct: 320 DKLTLAALEATLRLYLDPEKALEKIPTLRMLTQSPEEL 357
>gnl|CDD|224432 COG1515, Nfi, Deoxyinosine 3'endonuclease (endonuclease V) [DNA
replication, recombination, and repair].
Length = 212
Score = 28.4 bits (64), Expect = 8.1
Identities = 10/46 (21%), Positives = 17/46 (36%)
Query: 162 CGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMN 207
CG + A K G V GG +K+ +P + ++
Sbjct: 135 CGTPVEPESRRGAGKPLYDKGEVLGGVLRTKERAKPIFVSPGHRIS 180
>gnl|CDD|223359 COG0282, ackA, Acetate kinase [Energy production and conversion].
Length = 396
Score = 28.3 bits (64), Expect = 9.8
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 480 GQNECGIEADITAGLPKIGLEIDSNEINLGK 510
G+N + + GL +G+E+D E NL
Sbjct: 330 GENSALVRELVCEGLAFLGIELDP-EKNLRS 359
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.137 0.435
Gapped
Lambda K H
0.267 0.0789 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 26,514,417
Number of extensions: 2552627
Number of successful extensions: 1954
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1895
Number of HSP's successfully gapped: 55
Length of query: 524
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 423
Effective length of database: 6,457,848
Effective search space: 2731669704
Effective search space used: 2731669704
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.2 bits)