BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16643
(165 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6UWH6|TX261_HUMAN Protein TEX261 OS=Homo sapiens GN=TEX261 PE=2 SV=1
Length = 196
Score = 132 bits (331), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 59/134 (44%), Positives = 92/134 (68%)
Query: 27 VTAGLYYLAELVEEYSVLAKKVIQWLIIITLLIYAGFFCFEDLPTILLICGVLAQVLHLI 86
V AGLYYLAEL+EEY+V ++I+++I + + G + FE PT ++ G+ +++
Sbjct: 23 VAAGLYYLAELIEEYTVATSRIIKYMIWFSTAVLIGLYVFERFPTSMIGVGLFTNLVYFG 82
Query: 87 IIQNFPYVSLTSPAFIAAVVLIVVNHYYAMSYFQSNYHSFAEVMAFFTLCLWLVPFSLLV 146
++Q FP++ LTSP FI + L+VVNHY A +F Y+ F+EV+A+FT CLW++PF+ V
Sbjct: 83 LLQTFPFIMLTSPNFILSCGLVVVNHYLAFQFFAEEYYPFSEVLAYFTFCLWIIPFAFFV 142
Query: 147 SLSANDMVLPTVAE 160
SLSA + VLP+ +
Sbjct: 143 SLSAGENVLPSTMQ 156
>sp|Q5BJW3|TX261_RAT Protein TEX261 OS=Rattus norvegicus GN=Tex261 PE=2 SV=1
Length = 196
Score = 132 bits (331), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 59/134 (44%), Positives = 92/134 (68%)
Query: 27 VTAGLYYLAELVEEYSVLAKKVIQWLIIITLLIYAGFFCFEDLPTILLICGVLAQVLHLI 86
V AGLYYLAEL+EEY+V ++I+++I + + G + FE PT ++ G+ +++
Sbjct: 23 VAAGLYYLAELIEEYTVATSRIIKYMIWFSTAVLIGLYVFERFPTSMIGVGLFTNLVYFG 82
Query: 87 IIQNFPYVSLTSPAFIAAVVLIVVNHYYAMSYFQSNYHSFAEVMAFFTLCLWLVPFSLLV 146
++Q FP++ LTSP FI + L+VVNHY A +F Y+ F+EV+A+FT CLW++PF+ V
Sbjct: 83 LLQTFPFIMLTSPNFILSCGLVVVNHYLAFQFFAEEYYPFSEVLAYFTFCLWIIPFAFFV 142
Query: 147 SLSANDMVLPTVAE 160
SLSA + VLP+ +
Sbjct: 143 SLSAGENVLPSTMQ 156
>sp|Q62302|TX261_MOUSE Protein TEX261 OS=Mus musculus GN=Tex261 PE=2 SV=1
Length = 196
Score = 132 bits (331), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 59/134 (44%), Positives = 92/134 (68%)
Query: 27 VTAGLYYLAELVEEYSVLAKKVIQWLIIITLLIYAGFFCFEDLPTILLICGVLAQVLHLI 86
V AGLYYLAEL+EEY+V ++I+++I + + G + FE PT ++ G+ +++
Sbjct: 23 VAAGLYYLAELIEEYTVATSRIIKYMIWFSTAVLIGLYVFERFPTSMIGVGLFTNLVYFG 82
Query: 87 IIQNFPYVSLTSPAFIAAVVLIVVNHYYAMSYFQSNYHSFAEVMAFFTLCLWLVPFSLLV 146
++Q FP++ LTSP FI + L+VVNHY A +F Y+ F+EV+A+FT CLW++PF+ V
Sbjct: 83 LLQTFPFIMLTSPNFILSCGLVVVNHYLAFQFFAEEYYPFSEVLAYFTFCLWIIPFAFFV 142
Query: 147 SLSANDMVLPTVAE 160
SLSA + VLP+ +
Sbjct: 143 SLSAGENVLPSTMQ 156
>sp|Q5RFE0|TX261_PONAB Protein TEX261 OS=Pongo abelii GN=TEX261 PE=2 SV=1
Length = 196
Score = 131 bits (329), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 59/134 (44%), Positives = 92/134 (68%)
Query: 27 VTAGLYYLAELVEEYSVLAKKVIQWLIIITLLIYAGFFCFEDLPTILLICGVLAQVLHLI 86
V AGLYYLAEL+EEY+V ++I+++I + + G + FE PT ++ G+ +++
Sbjct: 23 VAAGLYYLAELIEEYTVATSRIIKYMIWFSTAVLIGLYVFERFPTSMIGVGLFTNLVYFG 82
Query: 87 IIQNFPYVSLTSPAFIAAVVLIVVNHYYAMSYFQSNYHSFAEVMAFFTLCLWLVPFSLLV 146
++Q FP++ LTSP FI + L+VVNHY A +F Y+ F+EV+A+FT CLW++PF+ V
Sbjct: 83 LLQTFPFIMLTSPNFILSCGLVVVNHYLACQFFAEEYYPFSEVLAYFTFCLWIIPFAFFV 142
Query: 147 SLSANDMVLPTVAE 160
SLSA + VLP+ +
Sbjct: 143 SLSAGENVLPSTMQ 156
>sp|Q58DA4|TX261_BOVIN Protein TEX261 OS=Bos taurus GN=TEX261 PE=2 SV=1
Length = 193
Score = 130 bits (327), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 58/132 (43%), Positives = 91/132 (68%)
Query: 29 AGLYYLAELVEEYSVLAKKVIQWLIIITLLIYAGFFCFEDLPTILLICGVLAQVLHLIII 88
AGLYYLAEL+EEY+V ++I+++I + + G + FE PT ++ G+ +++ ++
Sbjct: 22 AGLYYLAELIEEYTVATSRIIKYMIWFSTAVLIGLYVFERFPTYMIGVGLFTNLVYFGLL 81
Query: 89 QNFPYVSLTSPAFIAAVVLIVVNHYYAMSYFQSNYHSFAEVMAFFTLCLWLVPFSLLVSL 148
Q FP++ LTSP FI + L+VVNHY A +F Y+ F+EV+A+FT CLW++PF+ VSL
Sbjct: 82 QTFPFIMLTSPNFILSCGLVVVNHYLAFQFFAEEYYPFSEVLAYFTFCLWIIPFAFFVSL 141
Query: 149 SANDMVLPTVAE 160
SA + VLP+ +
Sbjct: 142 SAGENVLPSTMQ 153
>sp|P38869|SVP26_YEAST Protein SVP26 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SVP26 PE=1 SV=1
Length = 228
Score = 97.1 bits (240), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 86/150 (57%), Gaps = 16/150 (10%)
Query: 27 VTAGLYYLAELVEEYSVLAKKVIQWLIIITLLIYAGFFCFEDLPTILLICGVLAQVLHLI 86
+ +GLYY++ELVEE++ ++ + I +LI + P L + + +++
Sbjct: 22 IASGLYYISELVEEHTEPTRRFLTRAIYGIILILILLLLLDGFPFKLTLFSIACYIVYYQ 81
Query: 87 IIQNFPYVSLTSPAFIAAVVLIVVNHYYAMSYFQS-----------NY-----HSFAEVM 130
+++FP++SLTSP F+ + V +V+NHY+ YF NY SFAEV
Sbjct: 82 NLKSFPFISLTSPTFLLSCVCVVLNHYFWFKYFNDTEVPPQFKFDPNYIPRRRASFAEVA 141
Query: 131 AFFTLCLWLVPFSLLVSLSANDMVLPTVAE 160
+FF +C+W +PF+L VSLSA D VLPT +E
Sbjct: 142 SFFGICVWFIPFALFVSLSAGDYVLPTTSE 171
>sp|Q54ER8|TX261_DICDI Protein TEX261 homolog OS=Dictyostelium discoideum GN=DDB_G0291374
PE=3 SV=1
Length = 207
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 80/135 (59%), Gaps = 2/135 (1%)
Query: 24 LIIVTAGLYYLAELVEEYSVLAKKVIQWLIIITLLIYAGFFCFEDLPTILLICGVLAQVL 83
++ + GLYY +ELVEE++ +AK+ I++ + + I FEDL L+ +
Sbjct: 19 VVCLACGLYYFSELVEEHATVAKRWIKYTMWFVMGIIFLLGIFEDLDFTSLLFSFIGHCC 78
Query: 84 HLIIIQNFPYVSLTSPAFIAAVVLIVVNHYYAMSYFQS--NYHSFAEVMAFFTLCLWLVP 141
+ ++ FP+V+LT FI +V+ +++H YF++ N++ F E++A FT C+WL+P
Sbjct: 79 YYTLLTEFPFVTLTGYKFILSVLSFIISHISWFIYFRNTENWYPFGEIIAIFTFCVWLIP 138
Query: 142 FSLLVSLSANDMVLP 156
+SL+AND LP
Sbjct: 139 LIFFISLAANDNSLP 153
>sp|Q1MTR8|SVP26_SCHPO Protein svp26 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=svp26 PE=3 SV=1
Length = 227
Score = 69.7 bits (169), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 21/154 (13%)
Query: 27 VTAGLYYLAELVEEYSVLAKKVIQWLIIITLLIYAGFFCFEDLPTILLICGVLAQVLHLI 86
+ + LYY++E VEE+S LAK + L+ + + F+ P L + + ++ I
Sbjct: 23 IASALYYISEFVEEHSRLAKAFLCRLVYFIMAVMVFLVIFDGFPFWLSAFSIFSHYIYKI 82
Query: 87 IIQNFPYVSLTSPAFIAAVVLIVVNHYYAMSYFQ---------------------SNYHS 125
FP+ S F+ A LIV NH + +FQ ++ S
Sbjct: 83 NFDTFPFFSFKRMRFLLACFLIVANHILWVRFFQVHEFPIKPRGLTYDFVGQRLLTSRAS 142
Query: 126 FAEVMAFFTLCLWLVPFSLLVSLSANDMVLPTVA 159
F++V +F +C+W VP + VS +A D LPT+
Sbjct: 143 FSQVASFMGVCVWSVPIGIFVSFTAADNTLPTIT 176
>sp|Q7NFT6|PSAA_GLOVI Photosystem I P700 chlorophyll a apoprotein A1 OS=Gloeobacter
violaceus (strain PCC 7421) GN=psaA PE=1 SV=1
Length = 783
Score = 31.6 bits (70), Expect = 2.3, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 8 ELVEEYSVLAKKVIQWLIIVTAGLYYLAELVEEYSV--LAKKVIQWLIIITLLIYAGFF 64
E++ + S +AK Q I++T+GL++L V + LA I LII L ++AG+F
Sbjct: 124 EILNDPSTVAKGFEQGGIVITSGLFHLWRAVGFTTTGQLAAMSIAMLIIAALFLFAGWF 182
>sp|P03600|POL1_CPMVS RNA1 polyprotein OS=Cowpea mosaic virus (strain SB) PE=1 SV=1
Length = 1866
Score = 30.4 bits (67), Expect = 4.7, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 57/138 (41%), Gaps = 31/138 (22%)
Query: 5 YLAELVEEYSVLAKKVIQWLIIVTAGLYYLAELVEEYSVLAKKVIQWLIIITLLIYAGFF 64
+ ++V+EY +A +V WL S L K++QW+ + + G+F
Sbjct: 191 HFEKMVQEYVPMAHRVCSWL-----------------SQLWDKIVQWISQASETM--GWF 231
Query: 65 ---CFEDLPT----ILLICGVLAQVLHLIIIQNFPYVSLTSPAFIAAVVLIVVNHYYAMS 117
C DL T L C L+ V L++ F L P ++ + L A
Sbjct: 232 LDGC-RDLMTWGIATLATCSALSLVEKLLVAMGF----LVEPFGLSGIFLRTGVVAAACY 286
Query: 118 YFQSNYHSFAEVMAFFTL 135
+ +N FAE+MA +L
Sbjct: 287 NYGTNSKGFAEMMALLSL 304
>sp|Q9ESC1|ELTD1_RAT EGF, latrophilin and seven transmembrane domain-containing protein
1 OS=Rattus norvegicus GN=Eltd1 PE=1 SV=1
Length = 738
Score = 29.6 bits (65), Expect = 9.1, Method: Composition-based stats.
Identities = 25/126 (19%), Positives = 56/126 (44%), Gaps = 17/126 (13%)
Query: 10 VEEYSVLAKKVIQWLIIVTA--------GLYYLAELVEEYSVLAKKVIQWLIIITLLIYA 61
V++Y++L + + Q II++ ++ +E+ + + K + L + L+
Sbjct: 469 VKDYNILTR-ITQLGIIISLICLAICIFTFWFFSEIQSTRTTIHKNLCCSLFLAQLVFLV 527
Query: 62 GFFCFEDLPTILLICGVLAQVLHLIIIQNFPYVSLTSPAFIAAVVLIVVNHYYAMSYFQS 121
G ++ T L+C ++A +LH + F ++ + + LIVV Y +
Sbjct: 528 GI----NINTNKLVCSIIAGLLHYFFLAAFAWMCIEG----IYLYLIVVGLIYNKGFLHK 579
Query: 122 NYHSFA 127
N++ F
Sbjct: 580 NFYIFG 585
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.331 0.143 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,763,884
Number of Sequences: 539616
Number of extensions: 1871207
Number of successful extensions: 6604
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 6572
Number of HSP's gapped (non-prelim): 61
length of query: 165
length of database: 191,569,459
effective HSP length: 109
effective length of query: 56
effective length of database: 132,751,315
effective search space: 7434073640
effective search space used: 7434073640
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 56 (26.2 bits)