Query psy16643
Match_columns 165
No_of_seqs 162 out of 240
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 18:19:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16643.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16643hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lbw_A M2 protein; proton chan 28.1 46 0.0016 18.0 2.3 14 56-69 9-22 (23)
2 2cwy_A Hypothetical protein TT 23.5 1.5E+02 0.0051 20.4 5.0 34 2-35 15-53 (94)
3 3bkd_A Transmembrane domain of 21.0 74 0.0025 17.6 2.3 13 57-69 13-25 (26)
4 3te3_A Polycystic kidney disea 20.4 55 0.0019 19.9 1.9 14 39-52 7-20 (39)
5 2kih_A Matrix protein 2; S31N, 16.9 38 0.0013 20.9 0.5 19 56-74 16-34 (43)
6 2r9g_A AAA ATPase, central reg 16.7 67 0.0023 26.0 2.1 12 29-40 32-43 (204)
7 4gif_A Polycystic kidney disea 16.1 78 0.0027 19.8 1.9 14 39-52 7-20 (45)
8 3lnu_A Topoisomerase IV subuni 15.7 1.1E+02 0.0037 26.8 3.4 23 33-55 371-393 (408)
9 1ei1_A DNA gyrase B, GYRB; ATP 15.4 1.1E+02 0.0039 26.3 3.4 24 33-56 355-378 (391)
10 2ljb_A M2 protein, BM2 protein 14.3 1.3E+02 0.0043 17.8 2.3 16 56-71 16-31 (35)
No 1
>3lbw_A M2 protein; proton channel, M2TM, HOST CEL membrane, hydrogen ION transport, ionic channel, transmembr virion, transport protein; HET: XYL; 1.65A {Influenza a virus}
Probab=28.15 E-value=46 Score=18.00 Aligned_cols=14 Identities=7% Similarity=0.211 Sum_probs=10.4
Q ss_pred HHHHHHHHHHhcCC
Q psy16643 56 TLLIYAGFFCFEDL 69 (165)
Q Consensus 56 ~i~~hv~L~~~d~f 69 (165)
+-+.|.++|++||+
T Consensus 9 igIlHLiLwIlDrL 22 (23)
T 3lbw_A 9 IAILHLILWILDRL 22 (26)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhc
Confidence 34578888998875
No 2
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=23.47 E-value=1.5e+02 Score=20.44 Aligned_cols=34 Identities=29% Similarity=0.501 Sum_probs=18.5
Q ss_pred chhHHH-HHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q psy16643 2 GLYYLA-ELVEEYSV----LAKKVIQWLIIVTAGLYYLA 35 (165)
Q Consensus 2 glyyl~-elveeyt~----~~~~~l~~lI~~a~gLyyl~ 35 (165)
|-||=| |..|+.=. .-++++..+|.++.|+|-..
T Consensus 15 g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~ 53 (94)
T 2cwy_A 15 GRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRR 53 (94)
T ss_dssp TCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHH
Confidence 445555 55555432 23556666666666666544
No 3
>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral PR membrane protein; HET: MSE BOG; 2.05A {Synthetic} SCOP: j.35.1.1 PDB: 1mp6_A 1nyj_A 2kqt_A* 2kad_A* 3c9j_A*
Probab=21.04 E-value=74 Score=17.63 Aligned_cols=13 Identities=8% Similarity=0.161 Sum_probs=9.8
Q ss_pred HHHHHHHHHhcCC
Q psy16643 57 LLIYAGFFCFEDL 69 (165)
Q Consensus 57 i~~hv~L~~~d~f 69 (165)
-+.|.++|++||.
T Consensus 13 GilHLiLwIldrl 25 (26)
T 3bkd_A 13 GILHLILWILDRL 25 (26)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhc
Confidence 4578888888874
No 4
>3te3_A Polycystic kidney disease 2-like 1 protein; trimeric coiled-coil, oligomerization domain, C-terminal CYT regulatory domain, metal transport; 2.69A {Homo sapiens}
Probab=20.38 E-value=55 Score=19.85 Aligned_cols=14 Identities=36% Similarity=0.653 Sum_probs=11.7
Q ss_pred HhhhHHHHHHHHHH
Q psy16643 39 EEYSVLAKKVIQWL 52 (165)
Q Consensus 39 Ee~~~~akr~i~~l 52 (165)
||+..++||+++.=
T Consensus 7 eeF~~L~rRVlqlE 20 (39)
T 3te3_A 7 EEFYMLTRRVLQLE 20 (39)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88999999998753
No 5
>2kih_A Matrix protein 2; S31N, proton channel, cell membrane, disulfide bond, hydrogen ION transport, ION transport, ionic channel, membrane; NMR {Influenza a virus} PDB: 2rlf_A* 2l0j_A 2kwx_A
Probab=16.87 E-value=38 Score=20.88 Aligned_cols=19 Identities=5% Similarity=-0.029 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhcCCchHHH
Q psy16643 56 TLLIYAGFFCFEDLPTILL 74 (165)
Q Consensus 56 ~i~~hv~L~~~d~fP~~~~ 74 (165)
+-+.|.++|++||.=|.|+
T Consensus 16 iGIlHLiLwildRlffkci 34 (43)
T 2kih_A 16 IGILHLILWILDRLFFKSI 34 (43)
T ss_dssp HHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3457888999998655543
No 6
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=16.65 E-value=67 Score=25.97 Aligned_cols=12 Identities=67% Similarity=0.841 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHh
Q psy16643 29 AGLYYLAELVEE 40 (165)
Q Consensus 29 ~gLyyl~elvEe 40 (165)
+++||++.++|.
T Consensus 32 AAly~LaRml~~ 43 (204)
T 2r9g_A 32 AALHYLARLVEA 43 (204)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 455555555554
No 7
>4gif_A Polycystic kidney disease 2-like 1 protein; coiled-coil, trimer, Trp channel, transient receptor potenti channel, polycystic kidney disease (PKD); 2.80A {Homo sapiens}
Probab=16.06 E-value=78 Score=19.76 Aligned_cols=14 Identities=36% Similarity=0.653 Sum_probs=11.8
Q ss_pred HhhhHHHHHHHHHH
Q psy16643 39 EEYSVLAKKVIQWL 52 (165)
Q Consensus 39 Ee~~~~akr~i~~l 52 (165)
|||..++||+++.=
T Consensus 7 eeF~~L~rRVlqlE 20 (45)
T 4gif_A 7 EEFYMLTRRVLQLE 20 (45)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 89999999998753
No 8
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=15.68 E-value=1.1e+02 Score=26.83 Aligned_cols=23 Identities=13% Similarity=0.085 Sum_probs=20.0
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Q psy16643 33 YLAELVEEYSVLAKKVIQWLIII 55 (165)
Q Consensus 33 yl~elvEe~~~~akr~i~~lI~~ 55 (165)
-+.+..||||..||+++.+.+..
T Consensus 371 ~l~~~l~enp~~ak~i~~k~i~a 393 (408)
T 3lnu_A 371 AFSLYLNQNVEIGEKIAQIAIDR 393 (408)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCHHHHHHHHHHHHHH
Confidence 57788899999999999998754
No 9
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=15.36 E-value=1.1e+02 Score=26.28 Aligned_cols=24 Identities=33% Similarity=0.223 Sum_probs=20.4
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHH
Q psy16643 33 YLAELVEEYSVLAKKVIQWLIIIT 56 (165)
Q Consensus 33 yl~elvEe~~~~akr~i~~lI~~~ 56 (165)
-+....||||..||+++.+.+...
T Consensus 355 ~l~~~l~~np~~a~~i~~k~~~aa 378 (391)
T 1ei1_A 355 LLAEYLLENPTDAKIVVGKIIDAA 378 (391)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCHHHHHHHHHHHHHHH
Confidence 477888999999999999988653
No 10
>2ljb_A M2 protein, BM2 protein chimera; M2 channel, transport protein; NMR {Influenza a virus} PDB: 2ljc_A*
Probab=14.27 E-value=1.3e+02 Score=17.84 Aligned_cols=16 Identities=6% Similarity=-0.079 Sum_probs=11.5
Q ss_pred HHHHHHHHHHhcCCch
Q psy16643 56 TLLIYAGFFCFEDLPT 71 (165)
Q Consensus 56 ~i~~hv~L~~~d~fP~ 71 (165)
+-+.|.++|.+|+.-+
T Consensus 16 igiLHlilWildrLff 31 (35)
T 2ljb_A 16 IGILHFIAWTIGHLNQ 31 (35)
T ss_dssp HHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHhhhhHh
Confidence 3457888899888543
Done!