Query psy16643
Match_columns 165
No_of_seqs 162 out of 240
Neff 4.9
Searched_HMMs 13730
Date Fri Aug 16 18:19:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16643.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/16643hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2qw6a1 a.80.1.2 (A:241-328) U 26.1 13 0.00097 24.7 1.6 25 2-28 19-43 (88)
2 d2r9ga1 a.80.1.2 (A:238-423) U 25.7 16 0.0011 27.2 2.1 25 2-28 22-46 (186)
3 d1kija1 d.14.1.3 (A:221-392) D 18.1 38 0.0028 24.2 2.9 23 33-55 136-158 (172)
4 d1ei1a1 d.14.1.3 (A:221-392) D 17.9 39 0.0028 24.2 2.9 23 33-55 136-158 (172)
5 d1s16a1 d.14.1.3 (A:1217-1383) 15.8 44 0.0032 23.8 2.7 24 32-55 136-159 (167)
6 d1m0ka_ f.13.1.1 (A:) Bacterio 13.9 1.9E+02 0.014 20.9 6.1 37 5-44 119-155 (227)
7 d3ctda1 a.80.1.2 (A:258-420) U 8.5 52 0.0038 23.6 1.0 24 29-52 20-46 (163)
8 d1uaza_ f.13.1.1 (A:) Archaerh 8.2 2.6E+02 0.019 20.2 5.1 37 5-44 129-165 (236)
9 d2nxoa1 c.94.1.1 (A:5-281) Hyp 7.7 2.9E+02 0.021 19.2 5.1 37 7-50 188-224 (277)
10 d1xioa_ f.13.1.1 (A:) Sensory 7.0 3.9E+02 0.028 18.7 6.9 35 5-42 117-151 (226)
No 1
>d2qw6a1 a.80.1.2 (A:241-328) Uncharacterized protein EfaeDRAFT_0938 {Enterococcus faecium [TaxId: 1352]}
Probab=26.14 E-value=13 Score=24.66 Aligned_cols=25 Identities=36% Similarity=0.510 Sum_probs=11.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16643 2 GLYYLAELVEEYSVLAKKVIQWLIIVT 28 (165)
Q Consensus 2 glyyl~elveeyt~~~~~~l~~lI~~a 28 (165)
.|||+++++|.= .+ ..+.+|++.++
T Consensus 19 Alywlarml~~G-D~-~~i~RRLi~~A 43 (88)
T d2qw6a1 19 ALHYLARLVEAG-DL-ASICRRLMVIG 43 (88)
T ss_dssp HHHHHHHHHHTT-CH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-Ch-hHHHHHHHHHH
Confidence 355555555543 22 23444544444
No 2
>d2r9ga1 a.80.1.2 (A:238-423) Uncharacterized protein EfaeDRAFT_0938 {Enterococcus faecium [TaxId: 1352]}
Probab=25.65 E-value=16 Score=27.18 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=11.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16643 2 GLYYLAELVEEYSVLAKKVIQWLIIVT 28 (165)
Q Consensus 2 glyyl~elveeyt~~~~~~l~~lI~~a 28 (165)
.||||++++|+= . -..+.+|++.++
T Consensus 22 Aly~larml~~G-d-~~~i~RRL~~~A 46 (186)
T d2r9ga1 22 ALHYLARLVEAG-D-LASICRRLMVIG 46 (186)
T ss_dssp HHHHHHHHHHHT-C-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-C-chHHHHHHHHHH
Confidence 355555555532 2 233444444444
No 3
>d1kija1 d.14.1.3 (A:221-392) DNA gyrase B {Thermus thermophilus [TaxId: 274]}
Probab=18.09 E-value=38 Score=24.25 Aligned_cols=23 Identities=30% Similarity=0.302 Sum_probs=19.1
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Q psy16643 33 YLAELVEEYSVLAKKVIQWLIII 55 (165)
Q Consensus 33 yl~elvEe~~~~akr~i~~lI~~ 55 (165)
.+.+..|++|..||+++.+.+..
T Consensus 136 ~l~~~L~~np~~a~~I~~k~~~~ 158 (172)
T d1kija1 136 RLLEILEENPRIAKAVYEKALRA 158 (172)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCHHHHHHHHHHHHHH
Confidence 45778899999999999888753
No 4
>d1ei1a1 d.14.1.3 (A:221-392) DNA gyrase B {Escherichia coli [TaxId: 562]}
Probab=17.87 E-value=39 Score=24.20 Aligned_cols=23 Identities=35% Similarity=0.224 Sum_probs=19.2
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Q psy16643 33 YLAELVEEYSVLAKKVIQWLIII 55 (165)
Q Consensus 33 yl~elvEe~~~~akr~i~~lI~~ 55 (165)
.+.+..|++|..||+++.+.+..
T Consensus 136 ~l~~~l~~np~~a~~I~~k~~~~ 158 (172)
T d1ei1a1 136 LLAEYLLENPTDAKIVVGKIIDA 158 (172)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCHHHHHHHHHHHHHH
Confidence 46778899999999999987753
No 5
>d1s16a1 d.14.1.3 (A:1217-1383) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]}
Probab=15.82 E-value=44 Score=23.85 Aligned_cols=24 Identities=8% Similarity=-0.075 Sum_probs=19.8
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHH
Q psy16643 32 YYLAELVEEYSVLAKKVIQWLIII 55 (165)
Q Consensus 32 yyl~elvEe~~~~akr~i~~lI~~ 55 (165)
--+.+..|++|..||+++.+.+..
T Consensus 136 ~~l~~~l~~np~~a~~i~~k~i~~ 159 (167)
T d1s16a1 136 DAFILWLNQNVQAAELLAEMAISS 159 (167)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCHHHHHHHHHHHHHH
Confidence 346788999999999999988753
No 6
>d1m0ka_ f.13.1.1 (A:) Bacteriorhodopsin {Archaeon Halobacterium salinarum [TaxId: 2242]}
Probab=13.94 E-value=1.9e+02 Score=20.94 Aligned_cols=37 Identities=24% Similarity=0.399 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy16643 5 YLAELVEEYSVLAKKVIQWLIIVTAGLYYLAELVEEYSVL 44 (165)
Q Consensus 5 yl~elveeyt~~~~~~l~~lI~~a~gLyyl~elvEe~~~~ 44 (165)
|++|+.++. +.|....+++.+.-+|.+-++..+.++.
T Consensus 119 ~~g~~~~~~---~~k~~~~~is~~~f~~i~~~l~~~~~~~ 155 (227)
T d1m0ka_ 119 LVGALTKVY---SYRFVWWAISTAAMLYILYVLFFGFTSK 155 (227)
T ss_dssp HHHHHCSSH---HHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred hhhhhcccc---chhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566665432 3467777888888777777776555443
No 7
>d3ctda1 a.80.1.2 (A:258-420) Uncharacterized protein YrvN {Prochlorococcus marinus [TaxId: 1219]}
Probab=8.53 E-value=52 Score=23.62 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHh--hh-HHHHHHHHHH
Q psy16643 29 AGLYYLAELVEE--YS-VLAKKVIQWL 52 (165)
Q Consensus 29 ~gLyyl~elvEe--~~-~~akr~i~~l 52 (165)
++|||++-++|. -| .++||.+...
T Consensus 20 AAly~larml~~Gedp~~i~RRli~~A 46 (163)
T d3ctda1 20 ATLYWLANMVEAGEDPNFIFRRLLISA 46 (163)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 577888888763 34 3555555433
No 8
>d1uaza_ f.13.1.1 (A:) Archaerhodopsin-1 {Archaeon Halobacterium sp. [TaxId: 2243]}
Probab=8.16 E-value=2.6e+02 Score=20.18 Aligned_cols=37 Identities=14% Similarity=0.139 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy16643 5 YLAELVEEYSVLAKKVIQWLIIVTAGLYYLAELVEEYSVL 44 (165)
Q Consensus 5 yl~elveeyt~~~~~~l~~lI~~a~gLyyl~elvEe~~~~ 44 (165)
|++|+.+. ...|....+++.+.-++.+-++..+..+.
T Consensus 129 ~~ge~~~~---~~~~~~~~~~~~~~~~~i~y~l~~~~~~~ 165 (236)
T d1uaza_ 129 LVGALSHT---PLARYTWWLFSTICMIVVLYFLATSLRAA 165 (236)
T ss_dssp HHHHTCSS---HHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHhcC---cchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66665431 12356667777777777766666555443
No 9
>d2nxoa1 c.94.1.1 (A:5-281) Hypothetical protein SCo4506 {Streptomyces coelicolor [TaxId: 1902]}
Probab=7.68 E-value=2.9e+02 Score=19.19 Aligned_cols=37 Identities=16% Similarity=0.078 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy16643 7 AELVEEYSVLAKKVIQWLIIVTAGLYYLAELVEEYSVLAKKVIQ 50 (165)
Q Consensus 7 ~elveeyt~~~~~~l~~lI~~a~gLyyl~elvEe~~~~akr~i~ 50 (165)
.|.++++-..+++++... .--.+..++||.-|++++.
T Consensus 188 ~~~~~~~p~~~~~~~~a~-------~~a~~~~~~~p~ea~~~~a 224 (277)
T d2nxoa1 188 RDYAEREPVITRKVHEAF-------LASRNLSLEEVEKVAEQAA 224 (277)
T ss_dssp HHHHHHCHHHHHHHHHHH-------HHHHHHHHHTHHHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHH-------HHHHHHHHhCHHHHHHHHH
Confidence 467788888888887743 3445567888887777543
No 10
>d1xioa_ f.13.1.1 (A:) Sensory rhodopsin {Anabaena sp. PCC 7120 [TaxId: 103690]}
Probab=6.96 E-value=3.9e+02 Score=18.73 Aligned_cols=35 Identities=20% Similarity=0.110 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy16643 5 YLAELVEEYSVLAKKVIQWLIIVTAGLYYLAELVEEYS 42 (165)
Q Consensus 5 yl~elveeyt~~~~~~l~~lI~~a~gLyyl~elvEe~~ 42 (165)
|++|+.+. ...|....+++.++-++.+-.+..+..
T Consensus 117 ~~g~~~~~---~~~~~~~f~~~~~~f~~i~y~l~~~~~ 151 (226)
T d1xioa_ 117 LIADLSER---DWVRYLWYICGVCAFLIILWGIWNPLR 151 (226)
T ss_dssp HHHHHCSS---HHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHhcccc---hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55665432 223555566666666665555554443
Done!