RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy16643
         (165 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 42.0 bits (98), Expect = 3e-05
 Identities = 33/210 (15%), Positives = 61/210 (29%), Gaps = 69/210 (32%)

Query: 1   AGLY-----------YLAELVEEYSVLAKKVIQWLIIVTAGLYYLAELVEEYSVLAKK-- 47
           A L            Y  EL + Y      V   +      L  L     +   +  +  
Sbjct: 154 AQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL 213

Query: 48  -VIQWLII------ITLLIYAGFFCFEDLPTILLICGVLAQVLHLIII------------ 88
            +++WL           L+     C    P   LI   + Q+ H ++             
Sbjct: 214 NILEWLENPSNTPDKDYLLSIPISC----P---LIG--VIQLAHYVVTAKLLGFTPGELR 264

Query: 89  QNFPYVSLTSPAFIAAVVLIVVNHYYAMSYFQSNYHSFAE-VMAFFTLCLWL-------- 139
                 +  S   + AV +       A +    ++ SF   V    T+  ++        
Sbjct: 265 SYLKGATGHSQGLVTAVAI-------AET---DSWESFFVSVRKAITVLFFIGVRCYEAY 314

Query: 140 ----VPFSLLVSLSANDMVLPTVAETRPLL 165
               +P S+L     N+  +P+     P+L
Sbjct: 315 PNTSLPPSILEDSLENNEGVPS-----PML 339



 Score = 28.5 bits (63), Expect = 1.1
 Identities = 10/44 (22%), Positives = 14/44 (31%), Gaps = 13/44 (29%)

Query: 40   EYSVLAKKVIQWLIIITLLIYAGFFCFEDLPTILLICGVLAQVL 83
            EY+ LA               A     E L  ++   G+  QV 
Sbjct: 1766 EYAALAS-------------LADVMSIESLVEVVFYRGMTMQVA 1796


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 31.0 bits (69), Expect = 0.18
 Identities = 16/103 (15%), Positives = 29/103 (28%), Gaps = 9/103 (8%)

Query: 63  FFCFEDLPTILLICGVLAQVLHLIIIQNF----PYVSLTSPAFIAAVVLIVVNHYYAMSY 118
               +     LL+   L  V +      F      +  T    +   +      + ++ +
Sbjct: 237 LLKSKPYENCLLV---LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293

Query: 119 FQSNYHSFAEVMAFFTLCLWLVPFSL-LVSLSANDMVLPTVAE 160
                    EV +     L   P  L    L+ N   L  +AE
Sbjct: 294 HSMTLTP-DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE 335


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
           fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
           RED beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 1688

 Score = 31.0 bits (70), Expect = 0.20
 Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 19/67 (28%)

Query: 93  YVSLT--SPAFIAAVVL----------IVVNHYY---AMSYFQSNYHSFAEVMAFFTLCL 137
           YV +T      I A VL          +V    +      Y+QS Y  +    +     L
Sbjct: 478 YVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGS----TL 533

Query: 138 WLVPFSL 144
            +VPF+ 
Sbjct: 534 IVVPFNQ 540


>4dr0_A Ribonucleoside-diphosphate reductase subunit beta; ribonucleotide
           reductase, manganese, oxidoreductase; 1.90A {Bacillus
           subtilis}
          Length = 350

 Score = 26.5 bits (59), Expect = 4.9
 Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 6/63 (9%)

Query: 4   YYLAELVEEYSVLAKKVIQWLIIVTAGLYYLAELVEEYSVLAKKVIQWLIIITLLIYAGF 63
             + E V++   L KK  Q          Y A   ++   L K ++  + + + L Y+GF
Sbjct: 140 NEVFEWVKQNKYLQKKA-QM-----IVGLYKAIQKDDEISLFKAMVASVYLESFLFYSGF 193

Query: 64  FCF 66
           +  
Sbjct: 194 YYP 196


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.331    0.143    0.432 

Gapped
Lambda     K      H
   0.267   0.0713    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,591,728
Number of extensions: 150807
Number of successful extensions: 269
Number of sequences better than 10.0: 1
Number of HSP's gapped: 261
Number of HSP's successfully gapped: 10
Length of query: 165
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 79
Effective length of database: 4,300,587
Effective search space: 339746373
Effective search space used: 339746373
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 53 (24.2 bits)