BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16645
(94 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SNP|A Chain A, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Ferritin H Ire Rna
pdb|3SNP|B Chain B, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Ferritin H Ire Rna
pdb|3SN2|A Chain A, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Transferrin Receptor Ire B Rna
Length = 908
Score = 99.4 bits (246), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 50/93 (53%), Positives = 65/93 (69%), Gaps = 3/93 (3%)
Query: 1 MKNPYEHLKKTLNIGEKTYNYYDLPGLGQS-YDKLPFSIRVLLESAVRNCDEFQVKKSHV 59
+ NP+ +L + L+ + +++L L S Y +LPFSIRVLLE+AVRNCD+F VKK +
Sbjct: 20 LSNPFAYLAEPLDPAQPGKKFFNLNKLDYSRYGRLPFSIRVLLEAAVRNCDKFLVKKEDI 79
Query: 60 ENILKWEENQRLEGGVEVPFKPARVILQDLTGV 92
ENIL W Q + +EVPFKPARVILQD TGV
Sbjct: 80 ENILNWNVTQHMN--IEVPFKPARVILQDFTGV 110
>pdb|2B3X|A Chain A, Structure Of An Orthorhombic Crystal Form Of Human
Cytosolic Aconitase (Irp1)
pdb|2B3Y|A Chain A, Structure Of A Monoclinic Crystal Form Of Human
Cytosolic Aconitase (Irp1)
pdb|2B3Y|B Chain B, Structure Of A Monoclinic Crystal Form Of Human
Cytosolic Aconitase (Irp1)
Length = 888
Score = 98.6 bits (244), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 51/92 (55%), Positives = 63/92 (68%), Gaps = 3/92 (3%)
Query: 2 KNPYEHLKKTLNIGEKTYNYYDLPGLGQS-YDKLPFSIRVLLESAVRNCDEFQVKKSHVE 60
NP+ HL + L+ + +++L L S Y +LPFSIRVLLE+A+RNCDEF VKK +E
Sbjct: 1 SNPFAHLAEPLDPVQPGKKFFNLNKLEDSRYGRLPFSIRVLLEAAIRNCDEFLVKKQDIE 60
Query: 61 NILKWEENQRLEGGVEVPFKPARVILQDLTGV 92
NIL W Q +EVPFKPARVILQD TGV
Sbjct: 61 NILHWNVTQ--HKNIEVPFKPARVILQDFTGV 90
>pdb|3CG7|A Chain A, Crystal Structure Of Cell-Death Related Nuclease 4 (Crn-4)
pdb|3CG7|B Chain B, Crystal Structure Of Cell-Death Related Nuclease 4 (Crn-4)
pdb|3CM5|A Chain A, Crystal Structure Of Cell-Death Related Nuclease 4 (Crn-4)
Bound With Mn
pdb|3CM5|B Chain B, Crystal Structure Of Cell-Death Related Nuclease 4 (Crn-4)
Bound With Mn
pdb|3CM6|A Chain A, Crystal Structure Of Cell-Death Related Nuclease 4 (Crn-4)
Bound With Er
pdb|3CM6|B Chain B, Crystal Structure Of Cell-Death Related Nuclease 4 (Crn-4)
Bound With Er
Length = 308
Score = 29.3 bits (64), Expect = 0.59, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 6 EHLKKTLNIGEKTYNYYDLPGLGQSYDKL 34
+ L T NIG K YYDLP +G+++D +
Sbjct: 165 KELSATTNIG-KMNEYYDLPTIGRAHDAM 192
>pdb|3N1U|A Chain A, Structure Of Putative Had Superfamily (Subfamily Iii A)
Hydrolase From Legionella Pneumophila
Length = 191
Score = 28.5 bits (62), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 2 KNPYEHLKKTLNIGEKTYNYYDLPGLGQSYDKLPFSIRVLLESAVRNC 49
++ Y+HLKKTL + + + Y +G LP +V L AV N
Sbjct: 96 RSAYQHLKKTLGLNDDEFAY-----IGDDLPDLPLIQQVGLGVAVSNA 138
>pdb|2D51|A Chain A, Pentaketide Chromone Synthase (M207g Mutant)
pdb|2D51|B Chain B, Pentaketide Chromone Synthase (M207g Mutant)
pdb|2D52|A Chain A, Pentaketide Chromone Synthase (M207g Mutant Complexed With
Coa)
pdb|2D52|B Chain B, Pentaketide Chromone Synthase (M207g Mutant Complexed With
Coa)
Length = 406
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 14/77 (18%)
Query: 1 MKNPYEHLKKTLNIGEKTYNY-------------YDLPGLGQSYDKLPFSIRVL-LESAV 46
+K ++H+ K IG++ +NY YD P L D + L E+AV
Sbjct: 65 LKKKFDHICKKTMIGKRYFNYDEEFLKKYPNITSYDEPSLNDRQDICVPGVPALGTEAAV 124
Query: 47 RNCDEFQVKKSHVENIL 63
+ +E+ KS + +++
Sbjct: 125 KAIEEWGRPKSEITHLV 141
>pdb|2D3M|A Chain A, Pentaketide Chromone Synthase Complexed With Coenzyme A
pdb|2D3M|B Chain B, Pentaketide Chromone Synthase Complexed With Coenzyme A
Length = 406
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 14/77 (18%)
Query: 1 MKNPYEHLKKTLNIGEKTYNY-------------YDLPGLGQSYDKLPFSIRVL-LESAV 46
+K ++H+ K IG++ +NY YD P L D + L E+AV
Sbjct: 65 LKKKFDHICKKTMIGKRYFNYDEEFLKKYPNITSYDEPSLNDRQDICVPGVPALGTEAAV 124
Query: 47 RNCDEFQVKKSHVENIL 63
+ +E+ KS + +++
Sbjct: 125 KAIEEWGRPKSEITHLV 141
>pdb|2DP9|A Chain A, Crystal Structure Of Conserved Hypothetical Protein
Ttha0113 From Thermus Thermophilus Hb8
Length = 124
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 35 PFSIRVLLESAVRNCDEFQVKKSHV--ENILKW--EENQRLEGGVEVPFKPARVILQDLT 90
PFS+ LL ++ E +++ E + W E R E + VP +P RV+ DL+
Sbjct: 61 PFSVEELLAHQEKHLAEEAFLRAYAKDEPLYAWVLENAFRYEKPLHVPRRPGRVMFVDLS 120
Query: 91 GVN 93
V
Sbjct: 121 EVR 123
>pdb|1WK2|A Chain A, Crystal Structure Of A Hypothetical Protein From Thermus
Thermophilus Hb8
Length = 121
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 35 PFSIRVLLESAVRNCDEFQVKKSHV--ENILKW--EENQRLEGGVEVPFKPARVILQDLT 90
PFS+ LL ++ E +++ E + W E R E + VP +P RV DL+
Sbjct: 58 PFSVEELLAHQEKHLAEEAFLRAYAKDEPLYAWVLENAFRYEKPLHVPRRPGRVXFVDLS 117
Query: 91 GVN 93
V
Sbjct: 118 EVR 120
>pdb|2ODP|A Chain A, Complement Component C2a, The Catalytic Fragment Of C3-
And C5- Convertase Of Human Complement
pdb|2ODQ|A Chain A, Complement Component C2a, The Catalytic Fragment Of C3-
And C5- Convertase Of Human Complement
Length = 509
Score = 25.4 bits (54), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 2 KNPYEHLKKTLNIGEKTYNYYDLPGLG 28
K +H+++ LNI +K +Y D+ +G
Sbjct: 143 KTAVDHIREILNINQKRNDYLDIYAIG 169
>pdb|2I6Q|A Chain A, Complement Component C2a
pdb|2I6S|A Chain A, Complement Component C2a
Length = 517
Score = 25.4 bits (54), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 2 KNPYEHLKKTLNIGEKTYNYYDLPGLG 28
K +H+++ LNI +K +Y D+ +G
Sbjct: 151 KTAVDHIREILNINQKRNDYLDIYAIG 177
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.138 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,061,184
Number of Sequences: 62578
Number of extensions: 103465
Number of successful extensions: 240
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 227
Number of HSP's gapped (non-prelim): 18
length of query: 94
length of database: 14,973,337
effective HSP length: 61
effective length of query: 33
effective length of database: 11,156,079
effective search space: 368150607
effective search space used: 368150607
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)