Query psy16645
Match_columns 94
No_of_seqs 120 out of 748
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 18:22:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16645.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16645hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2b3y_A Iron-responsive element 99.9 8.5E-26 2.9E-30 192.2 4.0 91 2-94 1-92 (888)
2 1c96_A Mitochondrial aconitase 95.0 0.0036 1.2E-07 53.1 -0.3 21 74-94 58-78 (753)
3 1l5j_A Aconitate hydratase 2; 90.9 0.049 1.7E-06 46.9 0.3 59 32-93 343-420 (865)
4 3n00_B N-COR1, N-COR, nuclear 57.5 1.4 4.7E-05 21.2 -0.7 11 80-90 10-20 (21)
5 2g7o_A Protein TRAM; four heli 35.9 16 0.00053 22.3 1.4 10 39-48 11-20 (70)
6 4eqa_C PA1845 protein, putativ 30.9 12 0.00041 25.1 0.3 16 77-92 75-90 (153)
7 3a9f_A Cytochrome C; alpha hel 27.6 59 0.002 20.0 3.2 22 47-68 69-90 (92)
8 1c52_A Cytochrome-C552; electr 23.6 36 0.0012 21.3 1.6 19 53-71 74-92 (131)
9 1njg_A DNA polymerase III subu 23.4 67 0.0023 20.5 3.0 28 34-62 220-247 (250)
10 3vpj_E TSE1-specific immunity 22.1 22 0.00075 24.6 0.3 15 78-92 115-129 (192)
11 1gks_A Cytochrome C551; haloph 21.6 57 0.002 18.3 2.1 16 53-68 61-76 (78)
12 2l8d_A Lamin-B receptor; DNA b 20.5 16 0.00055 22.0 -0.6 19 62-88 17-35 (66)
No 1
>2b3y_A Iron-responsive element binding protein 1; IRP1 IRE-IRP1 aconitase activity, lyase; 1.85A {Homo sapiens} SCOP: c.8.2.1 c.83.1.1 PDB: 2b3x_A 3snp_A 3sn2_A 2ipy_A
Probab=99.91 E-value=8.5e-26 Score=192.20 Aligned_cols=91 Identities=55% Similarity=0.949 Sum_probs=83.0
Q ss_pred CCchhhhhcceeeCCeeEEEeeCCCcCC-CCCCCchHHHHHHHHHHhhcCcccccHHHHHHHHhhhhhccCCCCcccccc
Q psy16645 2 KNPYEHLKKTLNIGEKTYNYYDLPGLGQ-SYDKLPFSIRVLLESAVRNCDEFQVKKSHVENILKWEENQRLEGGVEVPFK 80 (94)
Q Consensus 2 ~~~~~~~~~~l~~~~~~~~y~~l~~l~~-~~~~LP~siRILLEn~lR~~d~~~v~~~~v~~l~~w~~~~~~~~~~eIpF~ 80 (94)
.|+|...++.|...|+.|+||+|++++. .+++|||||||||||+||||||+.+++++|+++++|.++... +.+|+|+
T Consensus 1 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~lp~s~rvlle~~~r~~~~~~~~~~~v~~~~~~~~~~~~--~~~i~~~ 78 (888)
T 2b3y_A 1 SNPFAHLAEPLDPVQPGKKFFNLNKLEDSRYGRLPFSIRVLLEAAIRNCDEFLVKKQDIENILHWNVTQHK--NIEVPFK 78 (888)
T ss_dssp CCTTGGGEEESCTTSTTCEEECGGGGCCTTGGGSCHHHHHHHHHHHHTCCSSSSCHHHHHHHHTHHHHTTT--TCEEEEC
T ss_pred CCchhhhhcccCCCCceeEEEEhHHccccchhhCCchHHHHHHHHHhccCCcchhHHHHHHHhcccccCCC--CCEEEEe
Confidence 3789987788888888999999999864 689999999999999999999999999999999999887665 7899999
Q ss_pred cceeecccccCccC
Q psy16645 81 PARVILQDLTGVNI 94 (94)
Q Consensus 81 PaRVllQDfTGVPa 94 (94)
|+||+||||||+||
T Consensus 79 pdrvl~qD~Tg~~a 92 (888)
T 2b3y_A 79 PARVILQDFTGVPA 92 (888)
T ss_dssp CSEEEEEHHHHHHH
T ss_pred ccEEEEEccccHHH
Confidence 99999999999985
No 2
>1c96_A Mitochondrial aconitase; lyase, tricarboxylic acid cycle, iron-sulfur, mitochondrion, transit peptide, 4Fe-4S, 3D-structure; HET: FLC; 1.81A {Bos taurus} SCOP: c.8.2.1 c.83.1.1 PDB: 1c97_A* 1b0k_A* 1b0j_A* 7acn_A* 6acn_A* 5acn_A* 1b0m_A* 1ami_A* 1amj_A 8acn_A* 1fgh_A* 1aco_A* 1nis_A* 1nit_A
Probab=95.02 E-value=0.0036 Score=53.06 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=18.4
Q ss_pred CcccccccceeecccccCccC
Q psy16645 74 GVEVPFKPARVILQDLTGVNI 94 (94)
Q Consensus 74 ~~eIpF~PaRVllQDfTGVPa 94 (94)
+.+|.|+|.||+|||+||+||
T Consensus 58 g~~i~~~~drvl~hD~T~~~a 78 (753)
T 1c96_A 58 KTYLRLRPDRVAMQDATAQMA 78 (753)
T ss_dssp TCEEEECCSEEEEETTTHHHH
T ss_pred CCEEEEEccEEEEeccccHHH
Confidence 446999999999999999874
No 3
>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric acid cycle, heat- like domain, lyase; HET: TRA; 2.40A {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1
Probab=90.86 E-value=0.049 Score=46.90 Aligned_cols=59 Identities=24% Similarity=0.189 Sum_probs=37.9
Q ss_pred CCCchHHHHHHHHHHhhcCc-------------------ccccHHHHHHHHhhhhhccCCCCcccccccceeecccccCc
Q psy16645 32 DKLPFSIRVLLESAVRNCDE-------------------FQVKKSHVENILKWEENQRLEGGVEVPFKPARVILQDLTGV 92 (94)
Q Consensus 32 ~~LP~siRILLEn~lR~~d~-------------------~~v~~~~v~~l~~w~~~~~~~~~~eIpF~PaRVllQDfTGV 92 (94)
..+||.++=.|-.-.|..=| ..+++.-+.....+. .-.. +..|..+|.||+|||+||.
T Consensus 343 Gli~~i~~r~l~~~a~~~l~~~~~~~f~~~~~~~~~~mg~TlaEKIl~~~~g~~-~v~~--G~~v~~~~D~v~~qD~Tg~ 419 (865)
T 1l5j_A 343 GRIPLIIGRGLTTKAREALGLPHSDVFRQAKDVAESDRGFSLAQKMVGRACGVK-GIRP--GAYCEPKMTSVGSQDTTGP 419 (865)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCCCCCSSCCCCCCCCCCSCCCHHHHHHHHTTTSS-CCCT--TCEECCBCSEEEECTTTHH
T ss_pred ChhhhhhcchHHHHHHHHcCCCchhhccCCCCCCCCCCCccHHHHHHHHHhCCC-ccCC--CCEEEEEeeEEEEeccCcH
Confidence 67999998888777776321 223333333222221 1122 5689999999999999998
Q ss_pred c
Q psy16645 93 N 93 (94)
Q Consensus 93 P 93 (94)
|
T Consensus 420 ~ 420 (865)
T 1l5j_A 420 M 420 (865)
T ss_dssp H
T ss_pred H
Confidence 7
No 4
>3n00_B N-COR1, N-COR, nuclear receptor corepressor 1; reverba ncorid1, anti-parallel B-sheet, transcription regula; 2.60A {Homo sapiens}
Probab=57.46 E-value=1.4 Score=21.18 Aligned_cols=11 Identities=27% Similarity=0.480 Sum_probs=8.7
Q ss_pred ccceeeccccc
Q psy16645 80 KPARVILQDLT 90 (94)
Q Consensus 80 ~PaRVllQDfT 90 (94)
.+.-||+||||
T Consensus 10 ~i~eVitqd~~ 20 (21)
T 3n00_B 10 HICQIITQDFA 20 (26)
T ss_pred HHHHHHHHHhc
Confidence 36778999987
No 5
>2g7o_A Protein TRAM; four helix bundle, tetramer, DNA binding protein; 1.40A {Escherichia coli} SCOP: a.241.1.1 PDB: 3d8a_A 2g9e_A
Probab=35.92 E-value=16 Score=22.30 Aligned_cols=10 Identities=40% Similarity=0.763 Sum_probs=8.9
Q ss_pred HHHHHHHHhh
Q psy16645 39 RVLLESAVRN 48 (94)
Q Consensus 39 RILLEn~lR~ 48 (94)
|+||||++|-
T Consensus 11 K~lLEn~~Kt 20 (70)
T 2g7o_A 11 KLLLECVVKT 20 (70)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7899999985
No 6
>4eqa_C PA1845 protein, putative uncharacterized protein; type VI secretion, T6S, antitoxin-toxin complex, unknown FUN; 1.60A {Pseudomonas aeruginosa} PDB: 4fgi_B
Probab=30.94 E-value=12 Score=25.13 Aligned_cols=16 Identities=19% Similarity=0.513 Sum_probs=12.1
Q ss_pred cccccceeecccccCc
Q psy16645 77 VPFKPARVILQDLTGV 92 (94)
Q Consensus 77 IpF~PaRVllQDfTGV 92 (94)
+.----|||||.|+|-
T Consensus 75 lsqdgrrvlmhefsgs 90 (153)
T 4eqa_C 75 LSQDGRRVLMHEFSGS 90 (153)
T ss_dssp EETTSSEEEEEEEETT
T ss_pred EecCCceeeeeeccCC
Confidence 3444569999999985
No 7
>3a9f_A Cytochrome C; alpha helix, mono heme, electron transport; HET: HEC P33 PGE PG4; 1.30A {Chlorobaculum tepidum}
Probab=27.64 E-value=59 Score=20.05 Aligned_cols=22 Identities=9% Similarity=0.190 Sum_probs=17.7
Q ss_pred hhcCcccccHHHHHHHHhhhhh
Q psy16645 47 RNCDEFQVKKSHVENILKWEEN 68 (94)
Q Consensus 47 R~~d~~~v~~~~v~~l~~w~~~ 68 (94)
....|..+++++..+|++|...
T Consensus 69 ~~mpg~~Is~eda~~Iv~YLa~ 90 (92)
T 3a9f_A 69 QGFPGSGISDDDAKTIGIWLHE 90 (92)
T ss_dssp HHSTTCCCCHHHHHHHHHHHHH
T ss_pred HhCCCCCCCHHHHHHHHHHHHH
Confidence 3345789999999999999853
No 8
>1c52_A Cytochrome-C552; electron transport protein, MAD, thermostability; HET: HEM; 1.28A {Thermus thermophilus} SCOP: a.3.1.1 PDB: 1qyz_A* 1r0q_A* 2fwl_A* 1foc_A* 1dt1_A*
Probab=23.62 E-value=36 Score=21.27 Aligned_cols=19 Identities=16% Similarity=0.183 Sum_probs=15.5
Q ss_pred cccHHHHHHHHhhhhhccC
Q psy16645 53 QVKKSHVENILKWEENQRL 71 (94)
Q Consensus 53 ~v~~~~v~~l~~w~~~~~~ 71 (94)
.+++++|.+|++|..+...
T Consensus 74 ~Lsd~ei~~l~~Yl~~~~~ 92 (131)
T 1c52_A 74 QLKDEEIAAVLNHIATAWG 92 (131)
T ss_dssp TSCHHHHHHHHHHHHHTTS
T ss_pred cCCHHHHHHHHHHHHHHcC
Confidence 5799999999999876543
No 9
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=23.38 E-value=67 Score=20.45 Aligned_cols=28 Identities=21% Similarity=0.165 Sum_probs=14.3
Q ss_pred CchHHHHHHHHHHhhcCcccccHHHHHHH
Q psy16645 34 LPFSIRVLLESAVRNCDEFQVKKSHVENI 62 (94)
Q Consensus 34 LP~siRILLEn~lR~~d~~~v~~~~v~~l 62 (94)
.|..++-+++.++....+ .++.++|+.+
T Consensus 220 ~~~~~~~~~~~~~~~~~~-~i~~~~v~~~ 247 (250)
T 1njg_A 220 SLRDALSLTDQAIASGDG-QVSTQAVSAM 247 (250)
T ss_dssp CHHHHHHHHHHHHTTTTS-SBCHHHHHHH
T ss_pred CHHHHHHHHHHHHhccCc-eecHHHHHHH
Confidence 555555555555544332 4555555543
No 10
>3vpj_E TSE1-specific immunity protein; hydrolase-hydrolase inhibitor complex; 2.50A {Pseudomonas aeruginosa}
Probab=22.10 E-value=22 Score=24.62 Aligned_cols=15 Identities=20% Similarity=0.508 Sum_probs=11.4
Q ss_pred ccccceeecccccCc
Q psy16645 78 PFKPARVILQDLTGV 92 (94)
Q Consensus 78 pF~PaRVllQDfTGV 92 (94)
.----|||||.|+|-
T Consensus 115 sqdgrrvlmhefsgs 129 (192)
T 3vpj_E 115 SQDGRRVLMHEFSGS 129 (192)
T ss_dssp ETTSSEEEEEEEETT
T ss_pred ecCCceeeeeeccCC
Confidence 334569999999985
No 11
>1gks_A Cytochrome C551; halophilic purple phototrophic bacterium, electron transport; HET: HEM; NMR {Halorhodospira halophila} SCOP: a.3.1.1
Probab=21.58 E-value=57 Score=18.27 Aligned_cols=16 Identities=0% Similarity=0.200 Sum_probs=13.8
Q ss_pred cccHHHHHHHHhhhhh
Q psy16645 53 QVKKSHVENILKWEEN 68 (94)
Q Consensus 53 ~v~~~~v~~l~~w~~~ 68 (94)
.+++++|.+|++|..+
T Consensus 61 ~Lsd~ei~~l~~yi~~ 76 (78)
T 1gks_A 61 RADREDLVKAIEYMLS 76 (78)
T ss_dssp TBCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHh
Confidence 6899999999999753
No 12
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=20.49 E-value=16 Score=22.03 Aligned_cols=19 Identities=21% Similarity=0.391 Sum_probs=14.2
Q ss_pred HHhhhhhccCCCCcccccccceeeccc
Q psy16645 62 ILKWEENQRLEGGVEVPFKPARVILQD 88 (94)
Q Consensus 62 l~~w~~~~~~~~~~eIpF~PaRVllQD 88 (94)
++.| + +. --|+|+||.-.|
T Consensus 17 maRW-~-Gd------~~yYparI~Si~ 35 (66)
T 2l8d_A 17 MGRW-P-GS------VLYYEVQVTSYD 35 (66)
T ss_dssp EEEC-T-TS------SCEEEEEEEEEE
T ss_pred EEEc-C-CC------ccceEEEEEEec
Confidence 7889 3 22 369999998777
Done!