RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16645
(94 letters)
>gnl|CDD|240263 PTZ00092, PTZ00092, aconitate hydratase-like protein; Provisional.
Length = 898
Score = 140 bits (355), Expect = 2e-40
Identities = 55/91 (60%), Positives = 63/91 (69%), Gaps = 4/91 (4%)
Query: 3 NPYEHLKKTLNIGEKTYNYYDLPGLGQS-YDKLPFSIRVLLESAVRNCDEFQVKKSHVEN 61
NP+E + KTL G +Y YY L L KLP+SIRVLLESAVRNCDEF V VEN
Sbjct: 14 NPFEKVLKTLKDG-GSYKYYSLNELHDPRLKKLPYSIRVLLESAVRNCDEFDVTSKDVEN 72
Query: 62 ILKWEENQRLEGGVEVPFKPARVILQDLTGV 92
IL WEEN + +E+PFKPARV+LQD TGV
Sbjct: 73 ILNWEENSK--KQIEIPFKPARVLLQDFTGV 101
>gnl|CDD|236445 PRK09277, PRK09277, aconitate hydratase; Validated.
Length = 888
Score = 117 bits (296), Expect = 2e-32
Identities = 36/88 (40%), Positives = 55/88 (62%), Gaps = 6/88 (6%)
Query: 9 KKTLNIGEKTYNYYDLPGL----GQSYDKLPFSIRVLLESAVRNCDEFQVKKSHVENILK 64
+KTL +G K+Y+YY L L +LP+S+RVLLE+ +RN D V + +E + +
Sbjct: 10 RKTLEVGGKSYDYYSLRALEAKGLGDISRLPYSLRVLLENLLRNEDGRSVTEEDIEALAE 69
Query: 65 WEENQRLEGGVEVPFKPARVILQDLTGV 92
W + + E+PF+PARV++QD TGV
Sbjct: 70 WLPKAKPDR--EIPFRPARVVMQDFTGV 95
>gnl|CDD|215047 PLN00070, PLN00070, aconitate hydratase.
Length = 936
Score = 110 bits (277), Expect = 6e-30
Identities = 49/94 (52%), Positives = 62/94 (65%), Gaps = 5/94 (5%)
Query: 2 KNPYEHLKKTLNI--GEKTYNYYDLPGLGQS-YDKLPFSIRVLLESAVRNCDEFQVKKSH 58
+NP++ + +L G + YY LP L DKLP+SIR+LLESA+RNCD FQV K
Sbjct: 42 ENPFKGILTSLPKPGGGEFGKYYSLPALNDPRIDKLPYSIRILLESAIRNCDNFQVTKED 101
Query: 59 VENILKWEENQRLEGGVEVPFKPARVILQDLTGV 92
VE I+ WE + VE+PFKPARV+LQD TGV
Sbjct: 102 VEKIIDWENTSPKQ--VEIPFKPARVLLQDFTGV 133
>gnl|CDD|233363 TIGR01341, aconitase_1, aconitate hydratase 1. This model
represents one form of the TCA cycle enzyme aconitate
hydratase, also known as aconitase and citrate
hydro-lyase. It is found in bacteria, archaea, and
eukaryotic cytosol. It has been shown to act also as an
iron-responsive element binding protein in animals and
may have the same role in other eukaryotes [Energy
metabolism, TCA cycle].
Length = 876
Score = 103 bits (258), Expect = 2e-27
Identities = 40/79 (50%), Positives = 52/79 (65%), Gaps = 5/79 (6%)
Query: 17 KTYNYYDLPGL---GQSYDKLPFSIRVLLESAVRNCDEFQVKKSHVENILKWEENQRLEG 73
KTY YY L L G KLP+SIR+LLES +RN D F + + +ENILKW+ + +
Sbjct: 1 KTYYYYSLKALEESGGKISKLPYSIRILLESVLRNLDGFSITEEDIENILKWKIGEVAD- 59
Query: 74 GVEVPFKPARVILQDLTGV 92
E+ FKPARV++QD TGV
Sbjct: 60 -TEIAFKPARVVMQDFTGV 77
>gnl|CDD|237246 PRK12881, acnA, aconitate hydratase; Provisional.
Length = 889
Score = 98.5 bits (246), Expect = 1e-25
Identities = 38/96 (39%), Positives = 57/96 (59%), Gaps = 6/96 (6%)
Query: 1 MKNPYEHLKKTLNIGEKTYNYYDLPGLGQS----YDKLPFSIRVLLESAVRNCDEFQVKK 56
M + K ++G KTY +Y LP LG+ +LP S+RVLLE+ +RN D +V +
Sbjct: 1 MAHNLHKTLKEFDVGGKTYKFYSLPALGKELGGDLARLPVSLRVLLENLLRNEDGKKVTE 60
Query: 57 SHVENILKWEENQRLEGGVEVPFKPARVILQDLTGV 92
H+E + W ++ + E+PF PARV++QD TGV
Sbjct: 61 EHLEALANWLPERKSD--DEIPFVPARVVMQDFTGV 94
>gnl|CDD|223977 COG1048, AcnA, Aconitase A [Energy production and conversion].
Length = 861
Score = 83.1 bits (206), Expect = 3e-20
Identities = 37/86 (43%), Positives = 55/86 (63%), Gaps = 7/86 (8%)
Query: 9 KKTLNIGEKTYNYYDLPGLGQS--YDKLPFSIRVLLESAVRNCDEFQVKKSHVENILKWE 66
+KTL +G KTY YYDLP L +S KLP+S+++LLE+ +R D + H+E + +W
Sbjct: 6 RKTLTVGGKTYYYYDLPKLEESGKISKLPYSLKILLENLLRGEDG---TEEHIEALARW- 61
Query: 67 ENQRLEGGVEVPFKPARVILQDLTGV 92
+ E+ F+PARV++QD TGV
Sbjct: 62 -LPSGKPEKEIAFRPARVVMQDFTGV 86
>gnl|CDD|131386 TIGR02333, 2met_isocit_dHY, 2-methylisocitrate dehydratase,
Fe/S-dependent. Members of this family appear in an
operon for the degradation of propionyl-CoA via
2-methylcitrate. This family is homologous to
aconitases A and B and appears to act the part as
2-methylisocitrate dehydratase, the enzyme after PrpD
and before PrpB. In Escherichia coli, which lacks a
member of this family, 2-methylisocitrate dehydratase
activity was traced to aconitase B (TIGR00117)
(PMID:12473114).
Length = 858
Score = 43.4 bits (102), Expect = 3e-06
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 10/67 (14%)
Query: 25 PGLGQSYDKLPFSIRVLLESAVRNCDEFQVKKSHVENILKWEENQRLEGGVEVPFKPARV 84
PG +YDKLP++ R+L E+ VR CD + S ++ I E + L + P+ PARV
Sbjct: 27 PG---AYDKLPYTSRILAENLVRRCDPETLSASLLQII---ERKRDL----DFPWYPARV 76
Query: 85 ILQDLTG 91
+ D+ G
Sbjct: 77 VCHDILG 83
>gnl|CDD|218986 pfam06317, Arena_RNA_pol, Arenavirus RNA polymerase. This family
consists of several Arenavirus RNA polymerase proteins
(EC:2.7.7.48).
Length = 2206
Score = 29.2 bits (66), Expect = 0.26
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 50 DEFQVKKSHVENILKWEENQRLEGGVEVPF 79
D +KK V N+L W L VEVPF
Sbjct: 1210 DGSDIKKDPVSNLLSWH----LHKLVEVPF 1235
>gnl|CDD|233883 TIGR02475, CobW, cobalamin biosynthesis protein CobW. The family
of proteins identified by this model is generally found
proximal to the trimeric cobaltochelatase subunit CobN
which is essential for vitamin B12 (cobalamin)
biosynthesis. The protein contains an P-loop
nucleotide-binding loop in the N-terminal domain and a
histidine-rich region in the C-terminal portion
suggesting a role in metal binding, possibly as an
intermediary between the cobalt transport and chelation
systems. A broader CobW family is delineated by two PFAM
models which identify the N- and C-terminal domains
(pfam02492 and pfam07683) [Biosynthesis of cofactors,
prosthetic groups, and carriers, Heme, porphyrin, and
cobalamin].
Length = 341
Score = 28.2 bits (63), Expect = 0.60
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 6/30 (20%)
Query: 58 HVENILKWEENQRLEGGVEVPFKPARVILQ 87
++L R++G VP KP R+++Q
Sbjct: 277 EEHDVL------RIKGFAAVPGKPMRLLVQ 300
>gnl|CDD|235974 PRK07229, PRK07229, aconitate hydratase; Validated.
Length = 646
Score = 27.8 bits (63), Expect = 0.73
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 5/36 (13%)
Query: 59 VENILK---WEENQRLEGGVEVPFKPARVILQDLTG 91
E IL E LE G E+ + + + QD TG
Sbjct: 6 TEKILYAHLVEG--ELEPGEEIAIRIDQTLTQDATG 39
>gnl|CDD|153136 cd01586, AcnA_IRP, Aconitase A catalytic domain. Aconitase A
catalytic domain. This is the major form of the TCA
cycle enzyme aconitate hydratase, also known as
aconitase and citrate hydrolyase. It includes bacterial
and archaeal aconitase A, and the eukaryotic cytosolic
form of aconitase. This group also includes sequences
that have been shown to act as an iron-responsive
element (IRE) binding protein in animals and may have
the same role in other eukaryotes.
Length = 404
Score = 26.5 bits (59), Expect = 2.2
Identities = 9/10 (90%), Positives = 9/10 (90%)
Query: 83 RVILQDLTGV 92
RVILQD TGV
Sbjct: 1 RVILQDFTGV 10
>gnl|CDD|227009 COG4663, FcbT1, TRAP-type mannitol/chloroaromatic compound
transport system, periplasmic component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 363
Score = 25.1 bits (55), Expect = 6.3
Identities = 21/92 (22%), Positives = 30/92 (32%), Gaps = 16/92 (17%)
Query: 3 NPYEHLKKTLNIGEKTYNYYDLPGLGQ------------SYDKLPFSIRVLLESAVRNCD 50
PY+ K K YY PG + +D LP + +L +A R +
Sbjct: 222 GPYDDEKLGFY---KVAPYYYYPGWWEGGPTVHFLVNKKKWDGLPKEYQAILRTACRAAN 278
Query: 51 EFQVKKSHVENILKWEENQRLEGGVEVPFKPA 82
+ K N +E EG PF
Sbjct: 279 ADMLNKYDDRNPTALKELVA-EGAKLRPFSQE 309
>gnl|CDD|202660 pfam03480, SBP_bac_7, Bacterial extracellular solute-binding
protein, family 7. This family of proteins are involved
in binding extracellular solutes for transport across
the bacterial cytoplasmic membrane. This family includes
a C4-dicarboxylate-binding protein and the sialic
acid-binding protein SiaP. The structure of the SiaP
receptor has revealed an overall topology similar to ATP
binding cassette ESR (extracytoplasmic solute receptors)
proteins. Upon binding of sialic acid, SiaP undergoes
domain closure about a hinge region and kinking of an
alpha-helix hinge component.
Length = 285
Score = 25.3 bits (56), Expect = 6.3
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 29 QSYDKLPFSIRVLLESAVRNCDEFQVKKSHVENILKWEENQRLEGGVEV 77
+D LP ++ +LE A + E+Q K + N + + E GVEV
Sbjct: 214 DFWDSLPEDLQAILEEAAKEATEYQNKLAEELN-EEALKKL-KEAGVEV 260
>gnl|CDD|237467 PRK13676, PRK13676, hypothetical protein; Provisional.
Length = 114
Score = 24.5 bits (54), Expect = 7.5
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 42 LESAVRNCDEFQVKKSHVENILKWEENQRL 71
LE A+R E++ K E + EE ++L
Sbjct: 12 LERALRELPEYKALKEAKEAVKADEEAKKL 41
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.138 0.405
Gapped
Lambda K H
0.267 0.0724 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,768,026
Number of extensions: 378372
Number of successful extensions: 327
Number of sequences better than 10.0: 1
Number of HSP's gapped: 314
Number of HSP's successfully gapped: 27
Length of query: 94
Length of database: 10,937,602
Length adjustment: 61
Effective length of query: 33
Effective length of database: 8,232,008
Effective search space: 271656264
Effective search space used: 271656264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.2 bits)