RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16645
         (94 letters)



>d2b3ya2 c.83.1.1 (A:2-630) Iron-responsive element binding
          protein 1, N-terminal domain {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 629

 Score =  132 bits (333), Expect = 2e-38
 Identities = 50/91 (54%), Positives = 62/91 (68%), Gaps = 3/91 (3%)

Query: 3  NPYEHLKKTLNIGEKTYNYYDLPGL-GQSYDKLPFSIRVLLESAVRNCDEFQVKKSHVEN 61
          NP+ HL + L+  +    +++L  L    Y +LPFSIRVLLE+A+RNCDEF VKK  +EN
Sbjct: 2  NPFAHLAEPLDPVQPGKKFFNLNKLEDSRYGRLPFSIRVLLEAAIRNCDEFLVKKQDIEN 61

Query: 62 ILKWEENQRLEGGVEVPFKPARVILQDLTGV 92
          IL W   Q     +EVPFKPARVILQD TGV
Sbjct: 62 ILHWNVTQH--KNIEVPFKPARVILQDFTGV 90


>d1acoa2 c.83.1.1 (A:2-528) Aconitase A, N-terminal domain {Cow
          (Bos taurus) [TaxId: 9913]}
          Length = 527

 Score = 40.5 bits (94), Expect = 6e-06
 Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 4/69 (5%)

Query: 25 PGLGQSYDKLPFSIRVLLESAVRNCDEFQ-VKKSHVENILKWEENQRLEGGVEVPFKPAR 83
          P     YD L  +I ++ +   R     + +   H+++    E      G   +  +P R
Sbjct: 11 PHEYIRYDLLEKNIDIVRKRLNRPLTLSEKIVYGHLDDPANQEIE---RGKTYLRLRPDR 67

Query: 84 VILQDLTGV 92
          V +QD T  
Sbjct: 68 VAMQDATAQ 76


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.138    0.405 

Gapped
Lambda     K      H
   0.267   0.0704    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 357,466
Number of extensions: 14038
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 4
Length of query: 94
Length of database: 2,407,596
Length adjustment: 57
Effective length of query: 37
Effective length of database: 1,624,986
Effective search space: 60124482
Effective search space used: 60124482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (21.9 bits)