BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16646
(159 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 33 FHCYVCKKKYRHKRQLVRHFQVNHTNNYDRVICEICNKEFTHKSSLAEHRVLHFPAQ-HK 91
F C +C K ++ L H ++ ++ C+ C K F KS + +H +H + HK
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIH--SDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHK 59
Query: 92 CSLCQQAFKRD 102
C +C +AF +
Sbjct: 60 CQVCGKAFSQS 70
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide
Reveals An Extension To The Rules For Zinc-FingerDNA
RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide
Reveals An Extension To The Rules For Zinc-FingerDNA
RECOGNITION
Length = 66
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 33 FHCYVCKKKYRHKRQLVRHFQVNHTNNYDRVICEICNKEFTHKSSLAEH-RVLH 85
+ C VC + Y H RH+ +H N C C KEFT K ++ H +++H
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Transcriptional Repressor Ctcf
Length = 86
Score = 35.0 bits (79), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 33 FHCYVCKKKYRHKRQLVRHFQVNHTNNY--DRVICEICNKEFTHKSSLAEH 81
+ C C K +R K+ L HF+ H N+ +C C K FT ++++A H
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 34.3 bits (77), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 33 FHCYVCKKKYRHKRQLVRHFQVNHTNNYDRVI-CEICNKEFTHKSSLAEHRVLHFPAQ-H 90
F C C K Y K L+ H N N ++V C +C + F + L H V H +
Sbjct: 36 FECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPY 95
Query: 91 KCSLCQQAFKRDK 103
KCS C Q F + K
Sbjct: 96 KCSSCSQQFMQKK 108
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domain Of Zinc Finger Protein 435
Length = 77
Score = 33.5 bits (75), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 62 RVICEICNKEFTHKSSLAEHRVLHFPAQ-HKCSLCQQAF 99
R C+ C K F+H S L++HR H + +KC C +AF
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAF 56
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2
Domains Of Human Zinc Finger Protein 297b
Length = 110
Score = 30.8 bits (68), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 33 FHCYVCKKKYRHKRQLVRHFQVNHTN--NYDRVICEICNKEFTHKSSLAEH 81
+ C VC KK++ K LV H ++ HT Y+ C IC K F + S H
Sbjct: 38 YGCGVCGKKFKMKHHLVGHMKI-HTGIKPYE---CNICAKRFMWRDSFHRH 84
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 38 CKKKYRHKRQLVRHFQVNHTNNYDRVICEICNKEFTHKSSLAEHRVLHFPAQ-HKCSLCQ 96
C K + HK Q RH ++ C +C K+F K L H +H + ++C++C
Sbjct: 15 CGKSFTHKSQRDRHMSMH--LGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICA 72
Query: 97 QAF 99
+ F
Sbjct: 73 KRF 75
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 68 CNKEFTHKSSLAEHRVLHFPAQ-HKCSLCQQAFKRDKHSKG 107
C K FTHKS H +H + + C +C + FK H G
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVG 55
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 30.4 bits (67), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 33 FHCYVCKKKYRHKRQLVRHFQVNHTNNYDRVICEICNKEFTHKSSLAEHRVLHFPAQ-HK 91
+ C C K + K+ L RH Q HT C C K F+ +++L H+ H + +
Sbjct: 50 YKCPECGKSFSDKKDLTRH-QRTHTGE-KPYKCPECGKSFSQRANLRAHQRTHTGEKPYA 107
Query: 92 CSLCQQAFKRDKH 104
C C ++F + H
Sbjct: 108 CPECGKSFSQLAH 120
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 78
Score = 30.0 bits (66), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 24/65 (36%), Gaps = 3/65 (4%)
Query: 26 DSSLPPQFHCYVCKKKYRHKRQLVRHFQVNHTNNYD--RVICEICNKEFTHKSSLAEHRV 83
SS C +C R K L H Q H R CE C K F S+A HR
Sbjct: 1 GSSGSSGLQCEICGFTCRQKASLNWH-QRKHAETVAALRFPCEFCGKRFEKPDSVAAHRS 59
Query: 84 LHFPA 88
PA
Sbjct: 60 KSHPA 64
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 29.6 bits (65), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 33 FHCYVCKKKYRHKRQLVRHFQVNHTNNYDRVICEICNKEFTHKSSLAEH 81
F C VC + + + L RH++ +HTN C +CN+ FT + L H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYR-SHTNE-KPYPCGLCNRAFTRRDLLIRH 49
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 64 ICEICNKEFTHKSSLAEHRVLHFPAQ-HKCSLCQQAFKR 101
+CE+C + F + L H H + + C LC +AF R
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTR 42
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 29.6 bits (65), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 20/49 (40%)
Query: 33 FHCYVCKKKYRHKRQLVRHFQVNHTNNYDRVICEICNKEFTHKSSLAEH 81
+ CY+C ++ + H HT N + C C+ KS L H
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVH 64
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 24 RVDSSLPPQFHCYVCKKKYRHKRQLVRHFQVNHTNNYDRVICEICNKEFTHKSSLAEHRV 83
R+ S +F C C + + L+ H + HT+ C+IC+K F + L +HR
Sbjct: 9 RLPSKTKKEFICKFCGRHFTKSYNLLIH-ERTHTDERP-YTCDICHKAFRRQDHLRDHRY 66
Query: 84 LHFPAQ-HKCSLCQQAF 99
+H + KC C + F
Sbjct: 67 IHSKEKPFKCQECGKGF 83
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 63 VICEICNKEFTHKSSLAEHRVLHFPAQ-HKCSLCQQAFKRDKH 104
IC+ C + FT +L H H + + C +C +AF+R H
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDH 60
>pdb|3ZF7|N Chain N, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 218
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 42/112 (37%), Gaps = 8/112 (7%)
Query: 23 PRVDSSLPPQFHCYVCKKKYRHKRQLVRHFQVNHTN------NYDRVICEICNKEFTHKS 76
PR +L PQ +C + Y KR+L R F + Y R I ++ +KS
Sbjct: 53 PRPLKALRPQVNCPTVR--YNMKRRLGRGFSLEELKAAGVKPRYARTIGIRVDRRRKNKS 110
Query: 77 SLAEHRVLHFPAQHKCSLCQQAFKRDKHSKGDDIREEIEREMKTRNSIGITV 128
+ + + L R K KGD EE++ + R+ G
Sbjct: 111 EEGMNINVQRLKTYMSKLVLFPLNRKKPQKGDATEEEVKAATQDRSRYGTAA 162
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 64 ICEICNKEFTHKSSLAEHRVLH 85
IC +C K FT +S+L +H+ +H
Sbjct: 14 ICTVCGKAFTDRSNLIKHQKIH 35
>pdb|2EOU|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
370- 400) Of Human Zinc Finger Protein 473
Length = 44
Score = 27.7 bits (60), Expect = 2.8, Method: Composition-based stats.
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C+ C K F H S L EH+ LH
Sbjct: 15 CQECGKIFRHSSLLIEHQALH 35
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C++C+K FT K+ LA+H+ H
Sbjct: 15 CKVCSKAFTQKAHLAQHQKTH 35
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C +C K F+H+ SL+ H+ +H
Sbjct: 15 CSVCGKAFSHRQSLSVHQRIH 35
>pdb|2ELR|A Chain A, Solution Structure Of The 15th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 27.7 bits (60), Expect = 3.2, Method: Composition-based stats.
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 64 ICEICNKEFTHKSSLAEHRVLH 85
+C++C K+F K +L H++LH
Sbjct: 11 LCDMCGKKFKSKGTLKSHKLLH 32
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C++C K F+H +SL +H+ +H
Sbjct: 15 CDVCRKAFSHHASLTQHQRVH 35
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 27.3 bits (59), Expect = 3.5, Method: Composition-based stats.
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C+ C+K F +S+L HR++H
Sbjct: 15 CDTCDKSFRQRSALNSHRMIH 35
>pdb|2WBT|A Chain A, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
pdb|2WBT|B Chain B, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
Length = 129
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
Query: 32 QFHCYVCKKKYRHKRQLVRHFQ-VNHTNNYDRVICEICNKEFTHKSSLAEH 81
QF C +C + L +H + HT +C +C KEFT S +H
Sbjct: 74 QFVCPLCLMPFSSSVSLKQHIRYTEHTK-----VCPVCKKEFTSTDSALDH 119
>pdb|3IYL|X Chain X, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
pdb|3IYL|Y Chain Y, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
Length = 1214
Score = 27.3 bits (59), Expect = 3.8, Method: Composition-based stats.
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 59 NYDRVICEICNKEFTHKSSLAEH 81
N +C +CN F+ S+L+EH
Sbjct: 113 NPSSYVCNVCNARFSTMSALSEH 135
>pdb|3K1Q|C Chain C, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
Microscopy And Bioinformatics
Length = 1196
Score = 27.3 bits (59), Expect = 3.8, Method: Composition-based stats.
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 59 NYDRVICEICNKEFTHKSSLAEH 81
N +C +CN F+ S+L+EH
Sbjct: 95 NPSSYVCNVCNARFSTMSALSEH 117
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
CE C K F H S L EH+ +H
Sbjct: 15 CEECGKAFIHDSQLQEHQRIH 35
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 26.9 bits (58), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 5/85 (5%)
Query: 26 DSSLPPQFHCYVCKKKYRHKRQLVRHFQVNHTNNYDRVICEICNKEFTHKSSLAEHRVLH 85
SS C +C K +R L RH +++H+ C +C F K ++ H H
Sbjct: 1 GSSGSSGVACEICGKIFRDVYHLNRH-KLSHSGE-KPYSCPVCGLRFKRKDRMSYHVRSH 58
Query: 86 FPAQHK---CSLCQQAFKRDKHSKG 107
+ K C C + F R H G
Sbjct: 59 DGSVGKPYICQSCGKGFSRPDHLNG 83
>pdb|2OBA|A Chain A, Pseudomonas Aeruginosa 6-Pyruvoyl Tetrahydrobiopterin
Synthase
pdb|2OBA|B Chain B, Pseudomonas Aeruginosa 6-Pyruvoyl Tetrahydrobiopterin
Synthase
pdb|2OBA|C Chain C, Pseudomonas Aeruginosa 6-Pyruvoyl Tetrahydrobiopterin
Synthase
pdb|2OBA|D Chain D, Pseudomonas Aeruginosa 6-Pyruvoyl Tetrahydrobiopterin
Synthase
pdb|2OBA|E Chain E, Pseudomonas Aeruginosa 6-Pyruvoyl Tetrahydrobiopterin
Synthase
pdb|2OBA|F Chain F, Pseudomonas Aeruginosa 6-Pyruvoyl Tetrahydrobiopterin
Synthase
Length = 138
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 70 KEFTHKSSLAEHRVLHFPAQHKCS-LCQQAFKRDKHSKGD 108
KEFT +S+ HR+ H P HKC L +F+ H +G+
Sbjct: 25 KEFTFESA---HRLPHVPEGHKCGRLHGHSFRVAIHIEGE 61
>pdb|2QGF|B Chain B, Structure Of Regulatory Chain Mutant H20a Of Asparate
Transcarbamoylase From E. Coli
pdb|2QGF|D Chain D, Structure Of Regulatory Chain Mutant H20a Of Asparate
Transcarbamoylase From E. Coli
Length = 153
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
Query: 17 RYRPYVP-RVDSSLP-PQFHCYVCKKKYRHKRQLVRHFQVNHTNNYDRVICEICNKEFTH 74
+ RP +P R+D+ L P +C H + F V N + C+ C KEF+H
Sbjct: 94 KSRPSLPERIDNVLVCPNSNCI------SHAEPVSSSFAVRKRANDIALKCKYCEKEFSH 147
Query: 75 KSSLA 79
LA
Sbjct: 148 NVVLA 152
>pdb|1D09|B Chain B, Aspartate Transcarbamoylase Complexed With
N-Phosphonacetyl-L- Aspartate (Pala)
pdb|1D09|D Chain D, Aspartate Transcarbamoylase Complexed With
N-Phosphonacetyl-L- Aspartate (Pala)
pdb|1EZZ|B Chain B, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
P268a Mutant In The T-State
pdb|1EZZ|D Chain D, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
P268a Mutant In The T-State
pdb|1F1B|B Chain B, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
P268a Mutant In The R-state In The Presence Of
N-phosphonacetyl-l-aspartate
pdb|1F1B|D Chain D, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
P268a Mutant In The R-state In The Presence Of
N-phosphonacetyl-l-aspartate
pdb|1I5O|B Chain B, Crystal Structure Of Mutant R105a Of E. Coli Aspartate
Transcarbamoylase
pdb|1I5O|D Chain D, Crystal Structure Of Mutant R105a Of E. Coli Aspartate
Transcarbamoylase
pdb|1SKU|B Chain B, E. Coli Aspartate Transcarbamylase 240's Loop Mutant
(K244n)
pdb|1SKU|D Chain D, E. Coli Aspartate Transcarbamylase 240's Loop Mutant
(K244n)
pdb|1Q95|G Chain G, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1Q95|H Chain H, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1Q95|I Chain I, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1Q95|J Chain J, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1Q95|K Chain K, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1Q95|L Chain L, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1R0B|G Chain G, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1R0B|H Chain H, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1R0B|I Chain I, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1R0B|J Chain J, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1R0B|K Chain K, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1R0B|L Chain L, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1R0C|B Chain B, Products In The T State Of Aspartate Transcarbamylase:
Crystal Structure Of The Phosphate And
N-Carbamyl-L-Aspartate Ligated Enzyme
pdb|1R0C|H Chain H, Products In The T State Of Aspartate Transcarbamylase:
Crystal Structure Of The Phosphate And
N-Carbamyl-L-Aspartate Ligated Enzyme
pdb|1TTH|B Chain B, Aspartate Transcarbamoylase Catalytic Chain Mutant
Glu50ala Complexed With N-(Phosphonacetyl-L-Aspartate)
(Pala)
pdb|1TTH|D Chain D, Aspartate Transcarbamoylase Catalytic Chain Mutant
Glu50ala Complexed With N-(Phosphonacetyl-L-Aspartate)
(Pala)
pdb|1TU0|B Chain B, Aspartate Transcarbamoylase Catalytic Chain Mutant E50a
Complex With Phosphonoacetamide
pdb|1TU0|D Chain D, Aspartate Transcarbamoylase Catalytic Chain Mutant E50a
Complex With Phosphonoacetamide
pdb|1TUG|B Chain B, Aspartate Transcarbamoylase Catalytic Chain Mutant E50a
Complex With Phosphonoacetamide, Malonate, And
Cytidine-5- Prime-Triphosphate (Ctp)
pdb|1TUG|D Chain D, Aspartate Transcarbamoylase Catalytic Chain Mutant E50a
Complex With Phosphonoacetamide, Malonate, And
Cytidine-5- Prime-Triphosphate (Ctp)
pdb|1XJW|B Chain B, The Structure Of E. Coli Aspartate Transcarbamoylase Q137a
Mutant In The R-State
pdb|1XJW|D Chain D, The Structure Of E. Coli Aspartate Transcarbamoylase Q137a
Mutant In The R-State
pdb|1ZA1|B Chain B, Structure Of Wild-Type E. Coli Aspartate Transcarbamoylase
In The Presence Of Ctp At 2.20 A Resolution
pdb|1ZA1|D Chain D, Structure Of Wild-Type E. Coli Aspartate Transcarbamoylase
In The Presence Of Ctp At 2.20 A Resolution
pdb|1ZA2|B Chain B, Structure Of Wild-Type E. Coli Aspartate Transcarbamoylase
In The Presence Of Ctp, Carbamoyl Phosphate At 2.50 A
Resolution
pdb|1ZA2|D Chain D, Structure Of Wild-Type E. Coli Aspartate Transcarbamoylase
In The Presence Of Ctp, Carbamoyl Phosphate At 2.50 A
Resolution
pdb|2A0F|B Chain B, Structure Of D236a Mutant E. Coli Aspartate
Transcarbamoylase In Presence Of Phosphonoacetamide At
2.90 A Resolution
pdb|2A0F|D Chain D, Structure Of D236a Mutant E. Coli Aspartate
Transcarbamoylase In Presence Of Phosphonoacetamide At
2.90 A Resolution
pdb|2AIR|B Chain B, T-State Active Site Of Aspartate Transcarbamylase:crystal
Structure Of The Carbamyl Phosphate And L-Alanosine
Ligated Enzyme
pdb|2AIR|H Chain H, T-State Active Site Of Aspartate Transcarbamylase:crystal
Structure Of The Carbamyl Phosphate And L-Alanosine
Ligated Enzyme
pdb|2FZC|B Chain B, The Structure Of Wild-Type E. Coli Aspartate
Transcarbamoylase In Complex With Novel T State
Inhibitors At 2.10 Resolution
pdb|2FZC|D Chain D, The Structure Of Wild-Type E. Coli Aspartate
Transcarbamoylase In Complex With Novel T State
Inhibitors At 2.10 Resolution
pdb|2FZG|B Chain B, The Structure Of Wild-Type E. Coli Aspartate
Transcarbamoylase In Complex With Novel T State
Inhibitors At 2.25 Resolution
pdb|2FZG|D Chain D, The Structure Of Wild-Type E. Coli Aspartate
Transcarbamoylase In Complex With Novel T State
Inhibitors At 2.25 Resolution
pdb|2FZK|B Chain B, The Structure Of Wild-Type E. Coli Aspartate
Transcarbamoylase In Complex With Novel T State
Inhibitors At 2.50 Resolution
pdb|2FZK|D Chain D, The Structure Of Wild-Type E. Coli Aspartate
Transcarbamoylase In Complex With Novel T State
Inhibitors At 2.50 Resolution
pdb|2H3E|B Chain B, Structure Of Wild-Type E. Coli Aspartate Transcarbamoylase
In The Presence Of N-Phosphonacetyl-L-Isoasparagine At
2.3a Resolution
pdb|2H3E|D Chain D, Structure Of Wild-Type E. Coli Aspartate Transcarbamoylase
In The Presence Of N-Phosphonacetyl-L-Isoasparagine At
2.3a Resolution
pdb|2HSE|B Chain B, Structure Of D236a E. Coli Aspartate Transcarbamoylase In
The Presence Of Phosphonoacetamide And L-Aspartate At
2.60 A Resolution
pdb|2HSE|D Chain D, Structure Of D236a E. Coli Aspartate Transcarbamoylase In
The Presence Of Phosphonoacetamide And L-Aspartate At
2.60 A Resolution
pdb|1RAA|B Chain B, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAA|D Chain D, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAB|B Chain B, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAB|D Chain D, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAC|B Chain B, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAC|D Chain D, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAD|B Chain B, Crystal Structure Of Ctp-ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAD|D Chain D, Crystal Structure Of Ctp-ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAE|B Chain B, Crystal Structure Of Ctp-ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAE|D Chain D, Crystal Structure Of Ctp-ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAF|B Chain B, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAF|D Chain D, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAG|B Chain B, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAG|D Chain D, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAH|B Chain B, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAH|D Chain D, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAI|B Chain B, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAI|D Chain D, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|2IPO|B Chain B, E. Coli Aspartate Transcarbamoylase Complexed With N-
Phosphonacetyl-l-asparagine
pdb|2IPO|D Chain D, E. Coli Aspartate Transcarbamoylase Complexed With N-
Phosphonacetyl-l-asparagine
pdb|3D7S|B Chain B, Crystal Structure Of Wild-Type E. Coli Asparate
Transcarbamoylase At Ph 8.5 At 2.80 A Resolution
pdb|3D7S|D Chain D, Crystal Structure Of Wild-Type E. Coli Asparate
Transcarbamoylase At Ph 8.5 At 2.80 A Resolution
pdb|3MPU|B Chain B, Crystal Structure Of The C47aA241C DISULFIDE-Linked E.
Coli Aspartate Transcarbamoylase Holoenzyme
pdb|3MPU|D Chain D, Crystal Structure Of The C47aA241C DISULFIDE-Linked E.
Coli Aspartate Transcarbamoylase Holoenzyme
pdb|3MPU|F Chain F, Crystal Structure Of The C47aA241C DISULFIDE-Linked E.
Coli Aspartate Transcarbamoylase Holoenzyme
pdb|4E2F|D Chain D, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
K164eE239K Mutant In An Intermediate State
pdb|4E2F|B Chain B, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
K164eE239K Mutant In An Intermediate State
pdb|4E2F|J Chain J, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
K164eE239K Mutant In An Intermediate State
pdb|4E2F|L Chain L, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
K164eE239K Mutant In An Intermediate State
pdb|4E2F|H Chain H, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
K164eE239K Mutant In An Intermediate State
pdb|4E2F|F Chain F, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
K164eE239K Mutant In An Intermediate State
pdb|4F04|B Chain B, A Second Allosteric Site In E. Coli Aspartate
Transcarbamoylase: R- State Atcase With Utp Bound
pdb|4F04|D Chain D, A Second Allosteric Site In E. Coli Aspartate
Transcarbamoylase: R- State Atcase With Utp Bound
pdb|4FYV|B Chain B, Aspartate Transcarbamoylase Complexed With Dctp
pdb|4FYV|D Chain D, Aspartate Transcarbamoylase Complexed With Dctp
pdb|4FYW|B Chain B, E. Coli Aspartate Transcarbamoylase Complexed With Ctp
pdb|4FYW|D Chain D, E. Coli Aspartate Transcarbamoylase Complexed With Ctp
pdb|4FYX|B Chain B, E. Coli Aspartate Transcarbamoylase Complexed With Dctp,
Utp, And Mg2+
pdb|4FYX|D Chain D, E. Coli Aspartate Transcarbamoylase Complexed With Dctp,
Utp, And Mg2+
pdb|4FYY|B Chain B, E. Coli Aspartate Transcarbamoylase Complexed With Ctp,
Utp, And Mg2+
pdb|4FYY|D Chain D, E. Coli Aspartate Transcarbamoylase Complexed With Ctp,
Utp, And Mg2+
Length = 153
Score = 26.6 bits (57), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
Query: 17 RYRPYVP-RVDSSLP-PQFHCYVCKKKYRHKRQLVRHFQVNHTNNYDRVICEICNKEFTH 74
+ RP +P R+D+ L P +C H + F V N + C+ C KEF+H
Sbjct: 94 KSRPSLPERIDNVLVCPNSNCI------SHAEPVSSSFAVRKRANDIALKCKYCEKEFSH 147
Query: 75 KSSLA 79
LA
Sbjct: 148 NVVLA 152
>pdb|1NBE|B Chain B, Aspartate Transcarbamoylase Regulatory Chain Mutant (T82a)
pdb|1NBE|D Chain D, Aspartate Transcarbamoylase Regulatory Chain Mutant (T82a)
Length = 153
Score = 26.6 bits (57), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
Query: 17 RYRPYVP-RVDSSLP-PQFHCYVCKKKYRHKRQLVRHFQVNHTNNYDRVICEICNKEFTH 74
+ RP +P R+D+ L P +C H + F V N + C+ C KEF+H
Sbjct: 94 KSRPSLPERIDNVLVCPNSNCI------SHAEPVSSSFAVRKRANDIALKCKYCEKEFSH 147
Query: 75 KSSLA 79
LA
Sbjct: 148 NVVLA 152
>pdb|1ACM|B Chain B, Arginine 54 In The Active Site Of Escherichia Coli
Aspartate Transcarbamoylase Is Critical For Catalysis: A
Site-Specific Mutagenesis, Nmr And X-Ray Crystallography
Study
pdb|1ACM|D Chain D, Arginine 54 In The Active Site Of Escherichia Coli
Aspartate Transcarbamoylase Is Critical For Catalysis: A
Site-Specific Mutagenesis, Nmr And X-Ray Crystallography
Study
pdb|5AT1|B Chain B, Structural Consequences Of Effector Binding To The T State
Of Aspartate Carbamoyltransferase. Crystal Structures Of
The Unligated And Atp-, And Ctp-Complexed Enzymes At
2.6-Angstroms Resolution
pdb|5AT1|D Chain D, Structural Consequences Of Effector Binding To The T State
Of Aspartate Carbamoyltransferase. Crystal Structures Of
The Unligated And Atp-, And Ctp-Complexed Enzymes At
2.6-Angstroms Resolution
pdb|8AT1|B Chain B, Crystal Structures Of Aspartate Carbamoyltransferase
Ligated With Phosphonoacetamide, Malonate, And Ctp Or
Atp At 2.8-Angstroms Resolution And Neutral PH
pdb|8AT1|D Chain D, Crystal Structures Of Aspartate Carbamoyltransferase
Ligated With Phosphonoacetamide, Malonate, And Ctp Or
Atp At 2.8-Angstroms Resolution And Neutral PH
pdb|1AT1|B Chain B, Crystal Structures Of Phosphonoacetamide Ligated T And
Phosphonoacetamide And Malonate Ligated R States Of
Aspartate Carbamoyltransferase At 2.8-Angstroms
Resolution And Neutral PH
pdb|1AT1|D Chain D, Crystal Structures Of Phosphonoacetamide Ligated T And
Phosphonoacetamide And Malonate Ligated R States Of
Aspartate Carbamoyltransferase At 2.8-Angstroms
Resolution And Neutral PH
pdb|8ATC|B Chain B, Complex Of N-Phosphonacetyl-L-Aspartate With Aspartate
Carbamoyltransferase. X-Ray Refinement, Analysis Of
Conformational Changes And Catalytic And Allosteric
Mechanisms
pdb|8ATC|D Chain D, Complex Of N-Phosphonacetyl-L-Aspartate With Aspartate
Carbamoyltransferase. X-Ray Refinement, Analysis Of
Conformational Changes And Catalytic And Allosteric
Mechanisms
pdb|2AT1|B Chain B, Crystal Structures Of Phosphonoacetamide Ligated T And
Phosphonoacetamide And Malonate Ligated R States Of
Aspartate Carbamoyltransferase At 2.8-Angstroms
Resolution And Neutral Ph
pdb|2AT1|D Chain D, Crystal Structures Of Phosphonoacetamide Ligated T And
Phosphonoacetamide And Malonate Ligated R States Of
Aspartate Carbamoyltransferase At 2.8-Angstroms
Resolution And Neutral Ph
pdb|3AT1|B Chain B, Crystal Structures Of Phosphonoacetamide Ligated T And
Phosphonoacetamide And Malonate Ligated R States Of
Aspartate Carbamoyltransferase At 2.8-Angstroms
Resolution And Neutral Ph
pdb|3AT1|D Chain D, Crystal Structures Of Phosphonoacetamide Ligated T And
Phosphonoacetamide And Malonate Ligated R States Of
Aspartate Carbamoyltransferase At 2.8-Angstroms
Resolution And Neutral Ph
pdb|4AT1|B Chain B, Structural Consequences Of Effector Binding To The T State
Of Aspartate Carbamoyltransferase. Crystal Structures Of
The Unligated And Atp-, And Ctp-Complexed Enzymes At
2.6-Angstroms Resolution
pdb|4AT1|D Chain D, Structural Consequences Of Effector Binding To The T State
Of Aspartate Carbamoyltransferase. Crystal Structures Of
The Unligated And Atp-, And Ctp-Complexed Enzymes At
2.6-Angstroms Resolution
pdb|6AT1|B Chain B, Structural Consequences Of Effector Binding To The T State
Of Aspartate Carbamoyltransferase. Crystal Structures Of
The Unligated And Atp-, And Ctp-Complexed Enzymes At
2.6-Angstroms Resolution
pdb|6AT1|D Chain D, Structural Consequences Of Effector Binding To The T State
Of Aspartate Carbamoyltransferase. Crystal Structures Of
The Unligated And Atp-, And Ctp-Complexed Enzymes At
2.6-Angstroms Resolution
pdb|7AT1|B Chain B, Crystal Structures Of Aspartate Carbamoyltransferase
Ligated With Phosphonoacetamide, Malonate, And Ctp Or
Atp At 2.8-angstroms Resolution And Neutral P*h
pdb|7AT1|D Chain D, Crystal Structures Of Aspartate Carbamoyltransferase
Ligated With Phosphonoacetamide, Malonate, And Ctp Or
Atp At 2.8-angstroms Resolution And Neutral P*h
Length = 153
Score = 26.6 bits (57), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
Query: 17 RYRPYVP-RVDSSLP-PQFHCYVCKKKYRHKRQLVRHFQVNHTNNYDRVICEICNKEFTH 74
+ RP +P R+D+ L P +C H + F V N + C+ C KEF+H
Sbjct: 94 KSRPSLPERIDNVLVCPNSNCI------SHAEPVSSSFAVRKRANDIALKCKYCEKEFSH 147
Query: 75 KSSLA 79
LA
Sbjct: 148 NVVLA 152
>pdb|2QG9|B Chain B, Structure Of A Regulatory Subunit Mutant D19a Of Atcase
From E. Coli
pdb|2QG9|D Chain D, Structure Of A Regulatory Subunit Mutant D19a Of Atcase
From E. Coli
Length = 153
Score = 26.6 bits (57), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
Query: 17 RYRPYVP-RVDSSLP-PQFHCYVCKKKYRHKRQLVRHFQVNHTNNYDRVICEICNKEFTH 74
+ RP +P R+D+ L P +C H + F V N + C+ C KEF+H
Sbjct: 94 KSRPSLPERIDNVLVCPNSNCI------SHAEPVSSSFAVRKRANDIALKCKYCEKEFSH 147
Query: 75 KSSLA 79
LA
Sbjct: 148 NVVLA 152
>pdb|9ATC|B Chain B, Atcase Y165f Mutant
Length = 146
Score = 26.6 bits (57), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
Query: 17 RYRPYVP-RVDSSLP-PQFHCYVCKKKYRHKRQLVRHFQVNHTNNYDRVICEICNKEFTH 74
+ RP +P R+D+ L P +C H + F V N + C+ C KEF+H
Sbjct: 87 KSRPSLPERIDNVLVCPNSNCI------SHAEPVSSSFAVRKRANDIALKCKYCEKEFSH 140
Query: 75 KSSLA 79
LA
Sbjct: 141 NVVLA 145
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 26.6 bits (57), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 64 ICEICNKEFTHKSSLAEHRVLH 85
IC C K FTHK++L H+ +H
Sbjct: 14 ICSECGKVFTHKTNLIIHQKIH 35
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 26.6 bits (57), Expect = 7.1, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 64 ICEICNKEFTHKSSLAEHRVLH 85
+C+ C K FT S L+ HR +H
Sbjct: 12 VCQECGKAFTQSSCLSIHRRVH 33
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 26.2 bits (56), Expect = 7.3, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 64 ICEICNKEFTHKSSLAEHRVLH 85
+C C K FT KS L H+ +H
Sbjct: 12 VCSDCGKAFTFKSQLIVHQGIH 33
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 26.2 bits (56), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C IC K FT KS L H+ +H
Sbjct: 15 CSICGKSFTKKSQLHVHQQIH 35
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain
Bound To The Adeno-Associated Virus P5 Initiator
Element
Length = 124
Score = 25.8 bits (55), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 38 CKKKYRHKRQLVRHFQVNHTNNYDRVICEICNKEFTHKSSLAEHRVLH 85
C K +R + +H HT+ +C C K F S L H+++H
Sbjct: 13 CTKMFRDNSAMRKHL---HTHGPRVHVCAECGKAFVESSKLKRHQLVH 57
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding
Protein In Complex With Methylated Cpg Site Dna
Length = 133
Score = 25.8 bits (55), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 11/70 (15%)
Query: 35 CYVCKKKYRHKRQLVRHFQVNHTNNYDRVICEICNKEFTHKSSLAEHRV---LHFPAQ-- 89
C VCK+ Y L RHF ++ + C C K F LAE+R +H +
Sbjct: 25 CIVCKRSYVCLTSLRRHFNIHSWEK--KYPCRYCEKVFP----LAEYRTKHEIHHTGERR 78
Query: 90 HKCSLCQQAF 99
++C C ++F
Sbjct: 79 YQCLACGKSF 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.132 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,169,302
Number of Sequences: 62578
Number of extensions: 146493
Number of successful extensions: 443
Number of sequences better than 100.0: 74
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 349
Number of HSP's gapped (non-prelim): 111
length of query: 159
length of database: 14,973,337
effective HSP length: 91
effective length of query: 68
effective length of database: 9,278,739
effective search space: 630954252
effective search space used: 630954252
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)