RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16646
(159 letters)
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 42.0 bits (99), Expect = 4e-06
Identities = 20/63 (31%), Positives = 22/63 (34%), Gaps = 3/63 (4%)
Query: 33 FHCYVCKKKYRHKRQLVRHFQVNHTNNY--DRVICEICNKEFTHKSSLAEHRVLHFPAQH 90
C +C R K L H Q H R CE C K F S+A HR PA
Sbjct: 8 LQCEICGFTCRQKASLNWH-QRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALL 66
Query: 91 KCS 93
Sbjct: 67 LAP 69
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex,
double helix, transcription/DNA complex; HET: DNA;
2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 39.5 bits (93), Expect = 2e-05
Identities = 17/53 (32%), Positives = 24/53 (45%)
Query: 33 FHCYVCKKKYRHKRQLVRHFQVNHTNNYDRVICEICNKEFTHKSSLAEHRVLH 85
+ C VC + Y H RH+ +H N C C KEFT K ++ H +
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Score = 30.6 bits (70), Expect = 0.045
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 65 CEICNKEFTHKSSLAEHRVLHFPAQHK---CSLCQQAFKR 101
C++C++ +TH S+ H V K C C + F R
Sbjct: 13 CKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTR 52
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 37.2 bits (85), Expect = 4e-04
Identities = 13/86 (15%), Positives = 22/86 (25%), Gaps = 4/86 (4%)
Query: 19 RPYVPRVDSSLPPQFHCYVCKKKYRHKRQLVRHFQVNHTNNYDRVICEICNKEFTHKSSL 78
+ C +C K + H ++ +C C+ F
Sbjct: 3 SGSSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNA----AVCPYCSLRFFSPELK 58
Query: 79 AEHRVLHFPAQHKCSLCQQAFKRDKH 104
EH + C C + FK
Sbjct: 59 QEHESKCEYKKLTCLECMRTFKSSFS 84
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 35.6 bits (83), Expect = 6e-04
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 3/43 (6%)
Query: 65 CEICNKEFTHKSSLAEHRVLH---FPAQHKCSLCQQAFKRDKH 104
C IC+ FT ++ H + A+ C C R
Sbjct: 18 CYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSD 60
Score = 35.6 bits (83), Expect = 7e-04
Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 3/55 (5%)
Query: 33 FHCYVCKKKYRHKRQLVRHFQVNHTNNYDRV-ICEICNKEFTHKSSLAEH-RVLH 85
+ CY+C ++ + H + C C+ KS L H R H
Sbjct: 16 YECYICHARFTQSGTMKMH-ILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 86
Score = 34.4 bits (80), Expect = 0.002
Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 9/73 (12%)
Query: 33 FHCYVCKKKYRHKRQLVRHFQVNHTNNYDRV---ICEICNKEFTHKSSLAEHRVLHF--- 86
+ C C K +R K+ L HF+ + + +C C K FT ++++A H
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKR-YHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPD 74
Query: 87 PAQHKCSLCQQAF 99
+ +
Sbjct: 75 G--VEGENSGPSS 85
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 34.4 bits (80), Expect = 0.002
Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 6/74 (8%)
Query: 33 FHCYVCKKKYRHKRQLVRHFQVNHTNN--YDRVICEICNKEFTHKSSLAEHRVLHFPAQH 90
F C +C + + L H HT + C+IC ++F HR +
Sbjct: 4 FQCRICMRNFSRSDHLTTH-IRTHTGEKPFA---CDICGRKFARSDERKRHRDIQHILPI 59
Query: 91 KCSLCQQAFKRDKH 104
++ ++ H
Sbjct: 60 LEDKVEELLSKNYH 73
Score = 28.6 bits (65), Expect = 0.27
Identities = 7/51 (13%), Positives = 16/51 (31%), Gaps = 5/51 (9%)
Query: 33 FHCYVCKKKYRHKRQLVRHFQVNHT-NNYDRVICEICNKEFTHKSSLAEHR 82
F C +C +K+ + RH + + + + + L
Sbjct: 32 FACDICGRKFARSDERKRH-RDIQHILPI---LEDKVEELLSKNYHLENEV 78
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 34.7 bits (81), Expect = 0.002
Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 11/75 (14%)
Query: 35 CYVCKKKYRHKRQLVRHFQVNHTNN--YDRVICEICNKEFTHKSSLAEHRVLHF---PAQ 89
C VC K + K +L H HT Y C+ C+ SSL +H +H P
Sbjct: 11 CEVCGKCFSRKDKLKTH-MRCHTGVKPYK---CKTCDYAAADSSSLNKHLRIHSDERP-- 64
Query: 90 HKCSLCQQAFKRDKH 104
KC +C A +
Sbjct: 65 FKCQICPYASRNSSQ 79
Score = 31.6 bits (73), Expect = 0.031
Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 6/53 (11%)
Query: 35 CYVCKKKYRHKRQLVRHFQVNHTNN--YDRVICEICNKEFTHKSSLAEHRVLH 85
C C L +H H++ + C+IC + S L H H
Sbjct: 39 CKTCDYAAADSSSLNKH-LRIHSDERPFK---CQICPYASRNSSQLTVHLRSH 87
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 34.4 bits (80), Expect = 0.003
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 9/77 (11%)
Query: 33 FHCYVCKKKYRHKRQLVRHFQVNHTNN--YDRVICEICNKEFTHKSSLAEHRVLH---FP 87
C +C K +R L RH +++H+ Y C +C F K ++ H H
Sbjct: 8 VACEICGKIFRDVYHLNRH-KLSHSGEKPYS---CPVCGLRFKRKDRMSYHVRSHDGSVG 63
Query: 88 AQHKCSLCQQAFKRDKH 104
+ C C + F R H
Sbjct: 64 KPYICQSCGKGFSRPDH 80
Score = 29.8 bits (68), Expect = 0.13
Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 33 FHCYVCKKKYRHKRQLVRHFQVNHTNNYDR-VICEICNKEFTHKSSLAEH 81
+ C VC +++ K ++ H +H + + IC+ C K F+ L H
Sbjct: 36 YSCPVCGLRFKRKDRMSYH-VRSHDGSVGKPYICQSCGKGFSRPDHLNGH 84
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 34.7 bits (79), Expect = 0.003
Identities = 14/76 (18%), Positives = 21/76 (27%), Gaps = 4/76 (5%)
Query: 33 FHCYVCKKKYRHKRQLVRHFQVNHTNNYDRVICEICNKEFT----HKSSLAEHRVLHFPA 88
F C C Y +L H D + N + +S L
Sbjct: 20 FRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQK 79
Query: 89 QHKCSLCQQAFKRDKH 104
KC C +F+ +
Sbjct: 80 VLKCMYCGHSFESLQD 95
Score = 26.3 bits (57), Expect = 2.8
Identities = 6/57 (10%), Positives = 14/57 (24%)
Query: 65 CEICNKEFTHKSSLAEHRVLHFPAQHKCSLCQQAFKRDKHSKGDDIREEIEREMKTR 121
C+ C+ + L H + + E+E + +
Sbjct: 22 CKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQ 78
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 33.9 bits (79), Expect = 0.005
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 11/74 (14%)
Query: 33 FHCYVCKKKYRHKRQLVRHFQVNHTNN--YDRVICEICNKEFTHKSSLAEHRVLHF---P 87
F C C + + L+ H + HT+ Y C+IC+K F + L +HR +H P
Sbjct: 18 FICKFCGRHFTKSYNLLIH-ERTHTDERPYT---CDICHKAFRRQDHLRDHRYIHSKEKP 73
Query: 88 AQHKCSLCQQAFKR 101
KC C + F +
Sbjct: 74 --FKCQECGKGFCQ 85
Score = 31.3 bits (72), Expect = 0.048
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 33 FHCYVCKKKYRHKRQLVRHFQVNHTNN--YDRVICEICNKEFTHKSSLAEHRVLH 85
+ C +C K +R + L H + H+ + C+ C K F +LA H+ LH
Sbjct: 46 YTCDICHKAFRRQDHLRDH-RYIHSKEKPFK---CQECGKGFCQSRTLAVHKTLH 96
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 34.0 bits (79), Expect = 0.006
Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 12/79 (15%)
Query: 33 FHCYVCKKKYRHKRQLVRH--FQVNHTNN--YDRVICEICNKEFTHKSSLAEHRVLHF-- 86
F C C K Y K L+ H + + + C +C + F + L H V H
Sbjct: 36 FECPKCGKCYFRKENLLEHEARNCMNRSEQVFT---CSVCQETFRRRMELRLHMVSHTGE 92
Query: 87 -PAQHKCSLCQQAFKRDKH 104
P +KCS C Q F + K
Sbjct: 93 MP--YKCSSCSQQFMQKKD 109
Score = 33.6 bits (78), Expect = 0.009
Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 14/77 (18%)
Query: 33 FHCYVCKKKYRHKRQLVRHFQVNHTNN--YDRVICEICNKEFTHKSSLAEHRVLHF---- 86
C C KK+ K L H HT ++ C C K + K +L EH +
Sbjct: 8 VECPTCHKKFLSKYYLKVH-NRKHTGEKPFE---CPKCGKCYFRKENLLEHEARNCMNRS 63
Query: 87 --PAQHKCSLCQQAFKR 101
CS+CQ+ F+R
Sbjct: 64 EQV--FTCSVCQETFRR 78
Score = 32.1 bits (74), Expect = 0.029
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 33 FHCYVCKKKYRHKRQLVRHFQVNHTNN--YDRVICEICNKEFTHKSSLAEH 81
F C VC++ +R + +L H V+HT Y C C+++F K L H
Sbjct: 67 FTCSVCQETFRRRMELRLH-MVSHTGEMPYK---CSSCSQQFMQKKDLQSH 113
Score = 28.2 bits (64), Expect = 0.72
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 65 CEICNKEFTHKSSLAEHRVLHF---PAQHKCSLCQQAFKRDKH 104
C C+K+F K L H H P +C C + + R ++
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKP--FECPKCGKCYFRKEN 50
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 34.3 bits (80), Expect = 0.008
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 11/72 (15%)
Query: 33 FHCYVCKKKYRHKRQLVRHFQVNHTNN--YDRVICEICNKEFTHKSSLAEHRVLHF---P 87
+ C C K + K+ L RH Q HT Y C C K F+ +++L H+ H P
Sbjct: 50 YKCPECGKSFSDKKDLTRH-QRTHTGEKPYK---CPECGKSFSQRANLRAHQRTHTGEKP 105
Query: 88 AQHKCSLCQQAF 99
+ C C ++F
Sbjct: 106 --YACPECGKSF 115
Score = 34.0 bits (79), Expect = 0.009
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 11/74 (14%)
Query: 33 FHCYVCKKKYRHKRQLVRHFQVNHTNN--YDRVICEICNKEFTHKSSLAEHRVLHF---P 87
+ C C K + L H Q HT Y C C K F+ + +L H+ H P
Sbjct: 106 YACPECGKSFSQLAHLRAH-QRTHTGEKPYK---CPECGKSFSREDNLHTHQRTHTGEKP 161
Query: 88 AQHKCSLCQQAFKR 101
+KC C ++F R
Sbjct: 162 --YKCPECGKSFSR 173
Score = 29.7 bits (68), Expect = 0.24
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 6/53 (11%)
Query: 35 CYVCKKKYRHKRQLVRHFQVNHTNN--YDRVICEICNKEFTHKSSLAEHRVLH 85
C C K + + L H Q HT Y C C K F+ + +L H+ H
Sbjct: 136 CPECGKSFSREDNLHTH-QRTHTGEKPYK---CPECGKSFSRRDALNVHQRTH 184
Score = 29.3 bits (67), Expect = 0.42
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Query: 65 CEICNKEFTHKSSLAEHRVLHF---PAQHKCSLCQQAFKRDKH 104
C C K F+ LAEH+ H P +KC C ++F K
Sbjct: 24 CPECGKSFSRSDHLAEHQRTHTGEKP--YKCPECGKSFSDKKD 64
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 72
Score = 32.1 bits (74), Expect = 0.011
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
Query: 33 FHCYVCKKKYRHKRQLVRHFQVNHTNN--YDRVICEICNKEFTHKSSLAEHRVLH 85
+ C C K + LV+H Q HT Y C C K F+ S L H+ +H
Sbjct: 15 YGCVECGKAFSRSSILVQH-QRVHTGEKPYK---CLECGKAFSQNSGLINHQRIH 65
Score = 30.1 bits (69), Expect = 0.073
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 65 CEICNKEFTHKSSLAEHRVLHF---PAQHKCSLCQQAFKRDKH 104
C C K F+ S L +H+ +H P +KC C +AF ++
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKP--YKCLECGKAFSQNSG 57
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 32.0 bits (74), Expect = 0.011
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Query: 35 CYVCKKKYRHKRQLVRHFQVNHTNN--YDRVICEICNKEFTHKSSLAEHRVLH 85
C C+ +R+K L H + HT Y C IC +F ++L H +H
Sbjct: 20 CDRCQASFRYKGNLASH-KTVHTGEKPYR---CNICGAQFNRPANLKTHTRIH 68
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 31.7 bits (73), Expect = 0.014
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 33 FHCYVCKKKYRHKRQLVRHFQVNHTNN--YDRVICEICNKEFTHKSSLAEH 81
F C VC + + + L RH +HTN Y C +CN+ FT + L H
Sbjct: 3 FVCEVCTRAFARQEHLKRH-YRSHTNEKPYP---CGLCNRAFTRRDLLIRH 49
Score = 29.0 bits (66), Expect = 0.15
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 65 CEICNKEFTHKSSLAEHRVLHF---PAQHKCSLCQQAFKRDKH 104
CE+C + F + L H H P + C LC +AF R
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKP--YPCGLCNRAFTRRDL 45
Score = 25.5 bits (57), Expect = 2.4
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 33 FHCYVCKKKYRHKRQLVRHFQVNHT 57
+ C +C + + + L+RH Q H+
Sbjct: 31 YPCGLCNRAFTRRDLLIRHAQKIHS 55
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 32.4 bits (75), Expect = 0.017
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 11/69 (15%)
Query: 38 CKKKYRHKRQLVRHFQVNHTNN--YDRVICEICNKEFTHKSSLAEHRVLHF---PAQHKC 92
C K + HK Q RH H Y C +C K+F K L H +H P ++C
Sbjct: 15 CGKSFTHKSQRDRH-MSMHLGLRPYG---CGVCGKKFKMKHHLVGHMKIHTGIKP--YEC 68
Query: 93 SLCQQAFKR 101
++C + F
Sbjct: 69 NICAKRFMW 77
Score = 30.9 bits (71), Expect = 0.071
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 13/74 (17%)
Query: 33 FHCYVCKKKYRHKRQLVRHFQVNHTNN--YDRVICEICNKEFTHKSSLAEHRVLHF---P 87
+ C VC KK++ K LV H HT Y+ C IC K F + S HR +
Sbjct: 38 YGCGVCGKKFKMKHHLVGH-MKIHTGIKPYE---CNICAKRFMWRDSF--HRHVTSCTKS 91
Query: 88 AQHKCSLCQQAFKR 101
++ + +Q
Sbjct: 92 --YEAAKAEQNTTE 103
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 32.2 bits (73), Expect = 0.020
Identities = 13/72 (18%), Positives = 21/72 (29%), Gaps = 8/72 (11%)
Query: 30 PPQFHCYVCKKKYRHKRQLVRHFQVNHTNNYDRVI-------CEICNKEFTHKSSLAEHR 82
C + + +LV H + H ++ C K F K L H
Sbjct: 23 QLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHI 82
Query: 83 VLHFPAQ-HKCS 93
+H + S
Sbjct: 83 RVHTGEKSGPSS 94
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 30.9 bits (71), Expect = 0.037
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
Query: 33 FHCYVCKKKYRHKRQLVRHFQVNHTNN--YDRVICEICNKEFTHKSSLAEHRVLH 85
+ C C K++ K + +H HT + C++C K F+ S+L H H
Sbjct: 30 YPCQYCGKRFHQKSDMKKH-TFIHTGEKPHK---CQVCGKAFSQSSNLITHSRKH 80
Score = 28.5 bits (65), Expect = 0.26
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 65 CEICNKEFTHKSSLAEHRVLHF---PAQHKCSLCQQAFKR 101
C+IC K F S+L+ H ++H P + C C + F +
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRP--YPCQYCGKRFHQ 41
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 30.2 bits (69), Expect = 0.038
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
CEIC F H +L H +H
Sbjct: 14 CEICGTRFRHLQTLKSHLRIH 34
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 30.5 bits (70), Expect = 0.038
Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 6/53 (11%)
Query: 35 CYVCKKKYRHKRQLVRHFQVNHTNN--YDRVICEICNKEFTHKSSLAEHRVLH 85
C C K L H + H + + C C+ + S+L++H
Sbjct: 12 CSECSYSCSSKAALRIH-ERIHCTDRPFK---CNYCSFDTKQPSNLSKHMKKF 60
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 30.5 bits (70), Expect = 0.053
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 11/66 (16%)
Query: 44 HKRQLVRHFQVNHTNN--YDRVICEICNKEFTHKSSLAEHRVLHF---PAQHKCSLCQQA 98
R + Y C+ C K F+H S L++HR H P +KC C +A
Sbjct: 2 SSGSSGRS-EWQQRERRRYK---CDECGKSFSHSSDLSKHRRTHTGEKP--YKCDECGKA 55
Query: 99 FKRDKH 104
F + H
Sbjct: 56 FIQRSH 61
Score = 28.6 bits (65), Expect = 0.22
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
Query: 33 FHCYVCKKKYRHKRQLVRHFQVNHTNN--YDRVICEICNKEFTHKSSLAEHRVLH 85
+ C C K + H L +H + HT Y C+ C K F +S L H +H
Sbjct: 19 YKCDECGKSFSHSSDLSKH-RRTHTGEKPYK---CDECGKAFIQRSHLIGHHRVH 69
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 32.1 bits (72), Expect = 0.071
Identities = 9/50 (18%), Positives = 16/50 (32%)
Query: 7 KSVKNPNAKKRYRPYVPRVDSSLPPQFHCYVCKKKYRHKRQLVRHFQVNH 56
+ P A + P + C VC ++ L H + +H
Sbjct: 91 ANATKPAAVVSDPQSMKVTPIVNPSSYVCNVCNARFSTMSALSEHLRSDH 140
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 29.9 bits (68), Expect = 0.11
Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 9/69 (13%)
Query: 38 CKKKYRHKRQLVRHFQVNHTNN--YDRVIC--EICNKEFTHKSSLAEHRVLHF-PAQHKC 92
C K ++ QL H Q +HT Y C E C+K F+ S L H +H K
Sbjct: 9 CGKAFKKHNQLKVH-QFSHTQQLPY---ECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKD 64
Query: 93 SLCQQAFKR 101
C K
Sbjct: 65 DSCSFVGKT 73
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 31.4 bits (70), Expect = 0.11
Identities = 5/22 (22%), Positives = 7/22 (31%)
Query: 64 ICEICNKEFTHKSSLAEHRVLH 85
C +C+ L H H
Sbjct: 182 QCHVCSAVLFSPLDLDAHVASH 203
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 28.3 bits (64), Expect = 0.17
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C C+ F+ SSL H+ +H
Sbjct: 15 CRECDMCFSQASSLRLHQNVH 35
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 28.3 bits (64), Expect = 0.19
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C C K F S+ +HR +H
Sbjct: 15 CSDCGKFFLQASNFIQHRRIH 35
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.0 bits (69), Expect = 0.19
Identities = 31/176 (17%), Positives = 58/176 (32%), Gaps = 47/176 (26%)
Query: 1 MNEMKKKSV--KNPNAKKRYRPYVPRVDSSLPPQFHCYVCKKKYRHKRQLVRHFQV---- 54
+N++ K S+ K P K +P + L + + +Y R +V H+ +
Sbjct: 408 VNKLHKYSLVEKQP---KESTISIPSIYLELKVK-----LENEYALHRSIVDHYNIPKTF 459
Query: 55 -------NHTNNYDRVICE-----ICNKEFTHKSSLAEHRVLHFPAQHKCSLCQQAFKRD 102
+ + Y + N E + +L L F F
Sbjct: 460 DSDDLIPPYLDQY---FYSHIGHHLKNIEHPERMTLFRMVFLDF-----------RFLEQ 505
Query: 103 KHSKGDDIREEIEREMKTRNSIGITVRQNQTNKNHRSGDQKKKTAKQLSMLNFVQK 158
K IR + SI T++Q + K + + K ++L+F+ K
Sbjct: 506 K------IRHD-STAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPK 554
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo
sapiens}
Length = 155
Score = 29.9 bits (68), Expect = 0.20
Identities = 11/61 (18%), Positives = 16/61 (26%), Gaps = 9/61 (14%)
Query: 33 FHCYVCKKKYRHKRQLVRHFQVNHT--------NNYDRVICEICNKEFTHKSSLAEHRVL 84
C + + +LV H + C K F K L H +
Sbjct: 26 RPKKSCDRTFSTMHELVTH-VTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRV 84
Query: 85 H 85
H
Sbjct: 85 H 85
Score = 29.6 bits (67), Expect = 0.24
Identities = 10/74 (13%), Positives = 22/74 (29%), Gaps = 12/74 (16%)
Query: 38 CKKKYRHKRQLVRHFQVNHTNNYDRVICEICNKEFTHKSSLAEH----------RVLHFP 87
+ +Q + + R + C++ F+ L H + H
Sbjct: 3 SGSSGQPIKQELSC-KWIDEAQLSRP-KKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVC 60
Query: 88 AQHKCSLCQQAFKR 101
+C ++FK
Sbjct: 61 YWEECPREGKSFKA 74
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2yta_A
Length = 42
Score = 28.0 bits (63), Expect = 0.22
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 64 ICEICNKEFTHKSSLAEHRVLH 85
+C C K FT + SLA H+
Sbjct: 13 LCGQCGKSFTQRGSLAVHQRSC 34
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.22
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C++C+K F + SSL H+ +H
Sbjct: 15 CDVCHKSFRYGSSLTVHQRIH 35
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 29.9 bits (68), Expect = 0.23
Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 9/69 (13%)
Query: 38 CKKKYRHKRQLVRHFQVNHTNN--YDRVIC--EICNKEFTHKSSLAEHRVLHF-PAQHKC 92
C K ++ QL H Q +HT Y+ C E C+K F+ S L H +H K
Sbjct: 112 CGKAFKKHNQLKVH-QFSHTQQLPYE---CPHEGCDKRFSLPSRLKRHEKVHAGYPCKKD 167
Query: 93 SLCQQAFKR 101
C K
Sbjct: 168 DSCSFVGKT 176
Score = 25.6 bits (57), Expect = 5.9
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 13/73 (17%)
Query: 38 CKKKYRHKRQLVRHFQVNHT--NNYDRVICE--ICNKEFTHKSSLAEHRVLHF---PAQH 90
C+K + L RH + HT N+ C+ C+ FT K+++ +H +
Sbjct: 50 CEKGFTSLHHLTRH-SLTHTGEKNFT---CDSDGCDLRFTTKANMKKHFNRFHNIKICVY 105
Query: 91 KCSL--CQQAFKR 101
C C +AFK+
Sbjct: 106 VCHFENCGKAFKK 118
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.8 bits (63), Expect = 0.26
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C+IC K F +S L H ++H
Sbjct: 15 CDICGKSFCGRSRLNRHSMVH 35
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.27
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C C K F+ L +H + H
Sbjct: 15 CSECGKSFSGSYRLTQHWITH 35
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.31
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C++C K F+H +SL +H+ +H
Sbjct: 15 CDVCRKAFSHHASLTQHQRVH 35
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 27.5 bits (62), Expect = 0.36
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
CE C F + L H ++H
Sbjct: 14 CETCGARFVQVAHLRAHVLIH 34
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 29.1 bits (64), Expect = 0.36
Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 4/80 (5%)
Query: 2 NEMKKKSVKNPNAKKRYRPYVPRVDSSLPPQFHCYVCKKKYRHKRQLVRHFQVNHTNNYD 61
+ K + NP + S QF C +C + L +H +
Sbjct: 44 RAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTE----H 99
Query: 62 RVICEICNKEFTHKSSLAEH 81
+C +C KEFT S +H
Sbjct: 100 TKVCPVCKKEFTSTDSALDH 119
Score = 26.0 bits (56), Expect = 3.7
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 64 ICEICNKEFTHKSSLAEHRVLHFPAQHKCSLCQQAFKRDKH 104
+C +C F+ SL +H C +C++ F
Sbjct: 76 VCPLCLMPFSSSVSLKQHIRYT-EHTKVCPVCKKEFTSTDS 115
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 79
Score = 28.3 bits (64), Expect = 0.37
Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 12/69 (17%)
Query: 38 CKKKYRHKRQLVRHFQVNHTNN--YDRVICE--ICNKEFTHKSSLAEHRVLHF---PAQH 90
C + + +++ L H + H + + C C K F K L EH LH +
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSF---SCPEPACGKSFNFKKHLKEHMKLHSDTRD--Y 69
Query: 91 KCSLCQQAF 99
C +
Sbjct: 70 ICEFSGPSS 78
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.37
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C +C K F+H+ SL+ H+ +H
Sbjct: 15 CSVCGKAFSHRQSLSVHQRIH 35
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.38
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
CE C K F H S L EH+ +H
Sbjct: 15 CEECGKAFIHDSQLQEHQRIH 35
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 27.5 bits (62), Expect = 0.38
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C C K F+ K L H+ +H
Sbjct: 15 CSQCEKSFSGKLRLLVHQRMH 35
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.39
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C C K FT SSL H+ +H
Sbjct: 15 CNECKKTFTQSSSLTVHQRIH 35
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.40
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C C K FTHK++L H+ +H
Sbjct: 15 CSECGKVFTHKTNLIIHQKIH 35
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.43
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C C K FT +S+L H+ +H
Sbjct: 15 CAECGKAFTDRSNLFTHQKIH 35
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.43
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C C K FT KS L H+ H
Sbjct: 15 CSDCGKSFTWKSRLRIHQKCH 35
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.44
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C C K F+ SSL H+V+H
Sbjct: 15 CNECGKAFSVYSSLTTHQVIH 35
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.46
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C IC K FT KS L H+ +H
Sbjct: 15 CSICGKSFTKKSQLHVHQQIH 35
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 27.7 bits (61), Expect = 0.49
Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 9/56 (16%)
Query: 65 CEICNKEFTHKSSLAEHRVLHFPAQHKCSLCQQAFKRDKHSKGDDIREEIEREMKT 120
C C F +S+L+ + C C++ ++ D E E KT
Sbjct: 21 CSKCGIIFIRRSTLSRRK------TPMCEKCRKDSCQEAALNKD---EGNESGKKT 67
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.49
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
CE C K + + +L H+ +H
Sbjct: 15 CEDCGKGYNRRLNLDMHQRVH 35
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 28.4 bits (64), Expect = 0.50
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 33 FHCYV--CKKKYRHKRQLVRHFQVNHTNNYDRVICEICNKEFTHKSSLAEHRVLH 85
+ C C ++ +L RH++ HT C +CN+ F+ LA H H
Sbjct: 46 YKCTWEGCDWRFARSDELTRHYRK-HTG-AKPFQCGVCNRSFSRSDHLALHMKRH 98
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.51
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C C K F+ +SSL H+ +H
Sbjct: 15 CNQCGKAFSVRSSLTTHQAIH 35
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 27.9 bits (63), Expect = 0.52
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 33 FHCYV--CKKKYRHKRQLVRHFQVNHTNNYDRVICEICNKEFTHKSSLAEHRVLHF 86
+HC C K+ +L RH++ HT + C+ C++ F+ LA H HF
Sbjct: 36 YHCDWDGCGWKFARSDELTRHYRK-HTG-HRPFQCQKCDRAFSRSDHLALHMKRHF 89
Score = 25.2 bits (56), Expect = 4.7
Identities = 20/77 (25%), Positives = 26/77 (33%), Gaps = 9/77 (11%)
Query: 33 FHCYVCKKKYRHKRQLVRHFQVNHTNN--YDRVIC--EICNKEFTHKSSLAEHRVLHFPA 88
C K Y L H + HT Y C + C +F L H H
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRT-HTGEKPY---HCDWDGCGWKFARSDELTRHYRKHTGH 63
Query: 89 Q-HKCSLCQQAFKRDKH 104
+ +C C +AF R H
Sbjct: 64 RPFQCQKCDRAFSRSDH 80
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.54
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C++C KEF+ S L H+ +H
Sbjct: 15 CDVCGKEFSQSSHLQTHQRVH 35
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 27.2 bits (61), Expect = 0.56
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 6/39 (15%)
Query: 65 CEICNKEFTHKSSLAEH-RVLHF---PAQHKCSLCQQAF 99
C+ C K F+ L H + +H P HKC +
Sbjct: 15 CQSCGKGFSRPDHLNGHIKQVHTSERP--HKCQVWVSGP 51
Score = 26.0 bits (58), Expect = 1.4
Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 5/43 (11%)
Query: 33 FHCYVCKKKYRHKRQLVRHFQVNHTNN--YDRVICEICNKEFT 73
+ C C K + L H + HT+ + C++ +
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHK---CQVWVSGPS 52
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 0.58
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C C K F H S L+ H+ +H
Sbjct: 15 CNECGKVFRHNSYLSRHQRIH 35
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 26.9 bits (60), Expect = 0.60
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C C + F+ + L +H+ +H
Sbjct: 13 CAECKETFSDNNRLVQHQKMH 33
Score = 24.2 bits (53), Expect = 4.2
Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 33 FHCYVCKKKYRHKRQLVRHFQVNHT 57
+ C CK+ + +LV+H Q HT
Sbjct: 11 YSCAECKETFSDNNRLVQH-QKMHT 34
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A
{Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB:
1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A*
1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 27.8 bits (63), Expect = 0.62
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 6/55 (10%)
Query: 33 FHCYVCKKKYRHKRQLVRHFQVNHTNN--YDRVICEICNKEFTHKSSLAEHRVLH 85
F C +C + + L H HT + C+IC ++F H +H
Sbjct: 35 FQCRICMRNFSRSDHLTTH-IRTHTGEKPFA---CDICGRKFARSDERKRHTKIH 85
Score = 26.7 bits (60), Expect = 1.3
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 5/40 (12%)
Query: 65 CEICNKEFTHKSSLAEHRVLHF---PAQHKCSLCQQAFKR 101
C IC + F+ L H H P C +C + F R
Sbjct: 37 CRICMRNFSRSDHLTTHIRTHTGEKP--FACDICGRKFAR 74
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 26.8 bits (60), Expect = 0.63
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C+ C K F K SL H +H
Sbjct: 13 CQECGKSFRQKGSLTLHERIH 33
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 0.64
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C +C K FT +S+L +H+ +H
Sbjct: 15 CTVCGKAFTDRSNLIKHQKIH 35
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 26.7 bits (60), Expect = 0.65
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C C K F+ S LA H+ +H
Sbjct: 15 CAECGKSFSISSQLATHQRIH 35
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 0.70
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C C K F +S LA H LH
Sbjct: 15 CNECGKGFGRRSHLAGHLRLH 35
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 0.71
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C C K FT KS L H+ H
Sbjct: 15 CSDCGKAFTRKSGLHIHQQSH 35
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine
trimethylation, protein, histone-binding protein,
transcription-structural complex; HET: M3L; 0.93A {Homo
sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Length = 129
Score = 28.2 bits (62), Expect = 0.72
Identities = 13/55 (23%), Positives = 19/55 (34%), Gaps = 5/55 (9%)
Query: 61 DRVICEICNKEFTH--KSSLAEHRVLHFPAQHKCSLCQQAFKRDKHSKGDDIREE 113
V C C ++ H K S+ H L C + D S+ D +E
Sbjct: 7 GIVSCTACGQQVNHFQKDSIYRHPSLQVLICKNCFKY---YMSDDISRDSDGMDE 58
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 26.7 bits (60), Expect = 0.72
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
CE C K F + L H ++H
Sbjct: 15 CEECGKGFICRRDLYTHHMVH 35
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 26.7 bits (60), Expect = 0.73
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C C + FT KS L +H+ +H
Sbjct: 15 CHECGRGFTLKSHLNQHQRIH 35
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 26.3 bits (59), Expect = 0.74
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C C K F+ K L H+ H
Sbjct: 15 CCECGKVFSRKDQLVSHQKTH 35
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 26.4 bits (58), Expect = 0.78
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 64 ICEICNKEFTHKSSLAEHRVLH 85
CEIC K F L H++ H
Sbjct: 14 ACEICGKIFRDVYHLNRHKLSH 35
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 26.3 bits (59), Expect = 0.81
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C C K F+ +S+L H LH
Sbjct: 15 CVECGKGFSRRSALNVHHKLH 35
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 26.4 bits (59), Expect = 0.83
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C+ C K F S L +H+ +H
Sbjct: 15 CKECGKSFRWASCLLKHQRVH 35
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 26.4 bits (57), Expect = 0.84
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C+ C K F H S L EH+ LH
Sbjct: 15 CQECGKIFRHSSLLIEHQALH 35
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 0.84
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
CE C K + K +L H+ +H
Sbjct: 15 CEKCGKGYNSKFNLDMHQKVH 35
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 26.3 bits (59), Expect = 0.90
Identities = 11/21 (52%), Positives = 11/21 (52%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C C K F KSSL HR H
Sbjct: 15 CIECGKAFKTKSSLICHRRSH 35
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 42
Score = 26.4 bits (59), Expect = 0.90
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C+ C K F+ K SL H +H
Sbjct: 14 CDQCGKAFSQKGSLIVHIRVH 34
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 0.91
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
CE C K FT S L H+ +H
Sbjct: 15 CEECGKRFTQNSQLHSHQRVH 35
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 0.92
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C C K F S+L H+V+H
Sbjct: 15 CNECGKAFRAHSNLTTHQVIH 35
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 0.96
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C C K FT KS+L+ H+ +H
Sbjct: 15 CTECGKAFTRKSTLSMHQKIH 35
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 0.97
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C C K F+ L +HR +H
Sbjct: 15 CIDCGKAFSDHIGLNQHRRIH 35
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 26.0 bits (58), Expect = 1.0
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C+ C F+ SL +H H
Sbjct: 15 CKECGMNFSWSCSLFKHLRSH 35
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 1.0
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C C K F KS L H+ +H
Sbjct: 15 CSDCGKSFIKKSQLHVHQRIH 35
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 1.0
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C C K F +SSLA H+ H
Sbjct: 15 CNECGKAFRARSSLAIHQATH 35
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 26.4 bits (59), Expect = 1.0
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C C K F KS L H+ H
Sbjct: 15 CTECGKAFCWKSQLIMHQRTH 35
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 26.0 bits (58), Expect = 1.0
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C C K F+ KS L H+ H
Sbjct: 13 CSCCEKAFSSKSYLLVHQQTH 33
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 26.0 bits (58), Expect = 1.1
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C+ C K F + S+L H+ +H
Sbjct: 15 CDECGKNFCYISALRIHQRVH 35
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.0 bits (58), Expect = 1.2
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C C K F SS +H+ LH
Sbjct: 15 CMECGKAFGDNSSCTQHQRLH 35
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 45
Score = 26.0 bits (58), Expect = 1.2
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C C K F K +L H+ +H
Sbjct: 15 CTHCGKSFRAKGNLVTHQRIH 35
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.9 bits (58), Expect = 1.2
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C C K FT +S+L +H+ +H
Sbjct: 15 CAECGKAFTIRSNLIKHQKIH 35
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.0 bits (58), Expect = 1.3
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C+ C K F L +H+ +H
Sbjct: 15 CKECRKTFIQIGHLNQHKRVH 35
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.9 bits (58), Expect = 1.4
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C C K F+ S LA H+ +H
Sbjct: 15 CNECGKAFSQTSKLARHQRIH 35
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.0 bits (58), Expect = 1.4
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C C K F+ KS L+ H+ H
Sbjct: 15 CNECGKTFSQKSILSAHQRTH 35
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.9 bits (58), Expect = 1.4
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C C K F KS+L H+ +H
Sbjct: 15 CSECGKAFARKSTLIMHQRIH 35
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 27.6 bits (62), Expect = 1.4
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 7/52 (13%)
Query: 38 CKKKYRHKRQLVRHFQVNHTNN--YDRVICEI--CNKEFTHKSSLAEHRVLH 85
C K + + +H H+N Y +C++ C K +T SSL +H
Sbjct: 105 CSKAFSNASDRAKHQNRTHSNEKPY---VCKLPGCTKRYTDPSSLRKHVKTV 153
Score = 26.0 bits (58), Expect = 5.1
Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 6/59 (10%)
Query: 33 FHCYVCKKKYRHKRQLVRHFQVNHTNNYDR------VICEICNKEFTHKSSLAEHRVLH 85
C +++ + QLV H H + + C + F + L H H
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRH 62
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.9 bits (58), Expect = 1.4
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C+ C K F + L H+ +H
Sbjct: 15 CDYCGKAFGLSAELVRHQRIH 35
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.6 bits (57), Expect = 1.5
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C C K + + L H+ +H
Sbjct: 15 CVECGKGYKRRLDLDFHQRVH 35
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 25.6 bits (55), Expect = 1.7
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 58 NNYDRVICEICNKEFTHKSSLAEHRVLH 85
++ +C++C K+F K +L H++LH
Sbjct: 5 SSGKTHLCDMCGKKFKSKGTLKSHKLLH 32
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 25.6 bits (57), Expect = 1.7
Identities = 8/21 (38%), Positives = 9/21 (42%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
CE C K F S H+ H
Sbjct: 15 CEECGKGFYTNSQCYSHQRSH 35
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.5 bits (57), Expect = 1.8
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C C K FT S L H +H
Sbjct: 15 CNECGKVFTQNSHLTNHWRIH 35
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 25.6 bits (57), Expect = 1.9
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C+ C K F+ L +H LH
Sbjct: 15 CKECGKSFSRAPCLLKHERLH 35
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.6 bits (57), Expect = 2.0
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C +C K F + L +H +H
Sbjct: 15 CNVCGKAFVLSAHLNQHLRVH 35
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 2.0
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C C K F+ S LA H+ +H
Sbjct: 15 CNECGKAFSQTSKLARHQRVH 35
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 25.2 bits (56), Expect = 2.2
Identities = 9/22 (40%), Positives = 10/22 (45%), Gaps = 1/22 (4%)
Query: 65 CEICNKEFTHKSSLAEH-RVLH 85
C C K F +SL H R H
Sbjct: 15 CIECGKAFIQNTSLIRHWRYYH 36
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 25.2 bits (56), Expect = 2.2
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C C K F+ KS L H+ H
Sbjct: 15 CSQCAKTFSLKSQLIVHQRSH 35
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 2.3
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C C K F K++L +H+ +H
Sbjct: 15 CGECGKAFAQKANLTQHQRIH 35
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.1 bits (56), Expect = 2.3
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C C K F + L EHR +H
Sbjct: 15 CSECGKAFHRHTHLNEHRRIH 35
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 25.1 bits (56), Expect = 2.4
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C C K F KS+L H+ H
Sbjct: 15 CNECQKAFNTKSNLMVHQRTH 35
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 25.2 bits (56), Expect = 2.7
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C C K F+ S L++H+ +H
Sbjct: 15 CNECGKVFSRNSQLSQHQKIH 35
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase
involved in aluminum resist structural genomics; HET:
MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Length = 427
Score = 27.1 bits (60), Expect = 2.7
Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 9/72 (12%)
Query: 1 MNEMKKKSVKNPNAKKRYRPYVPRVDSSLPPQFHCYVCKKKY---------RHKRQLVRH 51
M E K+ +K N R + + QF +++ + +R H
Sbjct: 2 MLESTKQFLKKYNINDRVLKLYETAMNDIQNQFKILDDIREFNQLKVLNAFQEERISEAH 61
Query: 52 FQVNHTNNYDRV 63
F + Y +
Sbjct: 62 FTNSSGYGYGDI 73
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.1 bits (56), Expect = 2.8
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C C K F KS+L H+ H
Sbjct: 15 CSECQKAFNTKSNLIVHQRTH 35
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 2.8
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C C K F KS L HR +H
Sbjct: 15 CNECGKSFIQKSHLNRHRRIH 35
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 2.9
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C C K F+ S L H+ +H
Sbjct: 15 CRECGKSFSFNSQLIVHQRIH 35
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 2.9
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C C K F KS+L+ H+ +H
Sbjct: 15 CSECGKAFIQKSTLSMHQRIH 35
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 24.8 bits (55), Expect = 3.0
Identities = 8/21 (38%), Positives = 9/21 (42%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C C K F K L H+ H
Sbjct: 13 CSECGKAFNRKDQLISHQRTH 33
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 3.0
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
CE C K FT S L H+ +H
Sbjct: 15 CEECGKRFTQNSHLHSHQRVH 35
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural
protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Length = 142
Score = 26.3 bits (57), Expect = 3.0
Identities = 13/55 (23%), Positives = 19/55 (34%), Gaps = 5/55 (9%)
Query: 61 DRVICEICNKEFTH--KSSLAEHRVLHFPAQHKCSLCQQAFKRDKHSKGDDIREE 113
V C C ++ H K S+ H L C + D S+ D +E
Sbjct: 13 GIVSCTACGQQVNHFQKDSIYRHPSLQVLICKNCFKY---YMSDDISRDSDGMDE 64
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.7 bits (55), Expect = 3.2
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C C K FT S L HR +H
Sbjct: 15 CNECGKVFTQNSHLVRHRGIH 35
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 44
Score = 24.8 bits (55), Expect = 3.2
Identities = 9/21 (42%), Positives = 9/21 (42%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C C K F KS L H H
Sbjct: 15 CNECGKAFIWKSLLIVHERTH 35
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 3.3
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C C K FT S LA HR +H
Sbjct: 15 CNECGKVFTQNSHLARHRGIH 35
>1v33_A DNA primase small subunit; nucleotidyl transferase, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; HET: DNA; 1.80A {Pyrococcus
horikoshii} SCOP: d.264.1.1 PDB: 1v34_A* 1g71_A*
Length = 366
Score = 26.8 bits (58), Expect = 3.3
Identities = 12/118 (10%), Positives = 28/118 (23%)
Query: 33 FHCYVCKKKYRHKRQLVRHFQVNHTNNYDRVICEICNKEFTHKSSLAEHRVLHFPAQHKC 92
+H V + R ++ + + E K +K + A
Sbjct: 170 YHIRVLDEWALKLDSKSRERILSFVSASEIEDVEEFRKLLLNKRGWFVLNHGYPRAFRLR 229
Query: 93 SLCQQAFKRDKHSKGDDIREEIEREMKTRNSIGITVRQNQTNKNHRSGDQKKKTAKQL 150
+ H IR+ I + + + ++ +L
Sbjct: 230 FGYFILRIKLPHLINAGIRKSIAKSILKSKEEIYEEFVRKAILAAFPQGVGIESLAKL 287
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 3.3
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C++C K F S L +H +H
Sbjct: 15 CQVCGKAFRVSSHLVQHHSVH 35
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 3.7
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C C K FT S LA H+ +H
Sbjct: 15 CNECGKVFTQNSHLANHQRIH 35
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 3.9
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C++C+K FT K+ LA+H+ H
Sbjct: 15 CKVCSKAFTQKAHLAQHQKTH 35
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 3.9
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C C K F+ KS L H H
Sbjct: 15 CSECGKAFSSKSYLIIHMRTH 35
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 24.4 bits (54), Expect = 4.4
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C+ C K F+ + L +H+ +H
Sbjct: 15 CKECGKAFSQTTHLIQHQRVH 35
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 4.5
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C C K FT S LA HR +H
Sbjct: 15 CNECGKVFTQNSHLARHRRVH 35
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 4.6
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C C K FT S LA HR +H
Sbjct: 15 CNECGKVFTQNSHLARHRGIH 35
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 25.6 bits (57), Expect = 4.7
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C+ C ++F+ L H H
Sbjct: 69 CKTCQRKFSRSDHLKTHTRTH 89
Score = 25.2 bits (56), Expect = 7.0
Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 8/57 (14%)
Query: 33 FHCYVCKKKYRHKRQLVRHFQVNHTNN--YDRVICEI--CNKEFTHKSSLAEHRVLH 85
F C C++K+ L H HT + C C K+F L H +H
Sbjct: 67 FQCKTCQRKFSRSDHLKTH-TRTHTGEKPFS---CRWPSCQKKFARSDELVRHHNMH 119
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 4.7
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C+ C K F LA H +H
Sbjct: 15 CKECGKAFRQNIHLASHLRIH 35
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 5.1
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C C K F S LA H+++H
Sbjct: 15 CHECGKVFRRNSHLARHQLIH 35
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 5.6
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C C K F+ K L H+ H
Sbjct: 15 CHECGKAFSRKYQLISHQRTH 35
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 5.6
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C C K F + L +H+ +H
Sbjct: 15 CNECGKSFIQSAHLIQHQRIH 35
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 24.0 bits (53), Expect = 5.7
Identities = 9/21 (42%), Positives = 9/21 (42%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C C K F KS L H H
Sbjct: 15 CNECGKAFRSKSYLIIHTRTH 35
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 24.6 bits (54), Expect = 6.1
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 33 FHCYV--CKKKYRHKRQLVRHFQVNHTNNYDRVICEICNKEFTHKSSLAEHRVLH 85
+ C V C +++ +L RH ++ HT C IC + F+ L H H
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRI-HTG-QKPFQCRICMRNFSRSDHLTTHIRTH 72
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 25.9 bits (56), Expect = 6.3
Identities = 7/37 (18%), Positives = 10/37 (27%)
Query: 55 NHTNNYDRVICEICNKEFTHKSSLAEHRVLHFPAQHK 91
N R+ E + + L L Q K
Sbjct: 201 NLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQGK 237
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 24.0 bits (52), Expect = 6.3
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C C++ FT ++ L +H H
Sbjct: 15 CSKCDRVFTQRNYLVQHERTH 35
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Length = 37
Score = 24.0 bits (51), Expect = 6.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 34 HCYVCKKKYRHKRQLVRHFQVNH 56
HC CKKKY + L++H + H
Sbjct: 11 HCRFCKKKYSDVKNLIKHIRDAH 33
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 7.9
Identities = 9/21 (42%), Positives = 9/21 (42%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C C K F S L EH H
Sbjct: 15 CNECGKNFGRHSHLIEHLKRH 35
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 23.3 bits (51), Expect = 9.6
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C C K FT L H+ +H
Sbjct: 15 CNECGKAFTRIFHLTRHQKIH 35
>3ung_C CMR2DHD; ferredoxin fold, nucleotide-binding, polymerase, CMR
complex function; HET: ADP; 2.31A {Pyrococcus furiosus}
PDB: 3ur3_C 4doz_A
Length = 693
Score = 25.4 bits (54), Expect = 10.0
Identities = 13/121 (10%), Positives = 39/121 (32%), Gaps = 4/121 (3%)
Query: 3 EMKKKSVKNPNAKKRYRPYVPRVDSSLPPQFHCYVCKKKYRHKRQLVRHFQVNHTNNYDR 62
+ K + + +K + + + C+VC + + H + +
Sbjct: 240 PLLVKILDSLGERKVTEERFEKSEQ--LKGWKCHVCGENLAIFGDMYDHDNLKSLWLDEE 297
Query: 63 VICEICNKEFTHKSSLAEH--RVLHFPAQHKCSLCQQAFKRDKHSKGDDIREEIEREMKT 120
+C +C + + + + + F + +L + +++ K RE+
Sbjct: 298 PLCPMCLIKRYYPVWIRSKTGQKIRFESVVDVALLYKNWRKIFDEKYGKDLVSKAREVSE 357
Query: 121 R 121
Sbjct: 358 D 358
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.130 0.390
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,295,924
Number of extensions: 122294
Number of successful extensions: 836
Number of sequences better than 10.0: 1
Number of HSP's gapped: 757
Number of HSP's successfully gapped: 275
Length of query: 159
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 73
Effective length of database: 4,300,587
Effective search space: 313942851
Effective search space used: 313942851
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.6 bits)