RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16646
(159 letters)
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 31.2 bits (70), Expect = 0.006
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 38 CKKKYRHKRQLVRHFQVNHTNNYDRVICEICNKEFTHKSSLAEHRVLH 85
C K + HK Q RH ++ C +C K+F K L H +H
Sbjct: 8 CGKSFTHKSQRDRH--MSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
Score = 26.6 bits (58), Expect = 0.29
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 68 CNKEFTHKSSLAEH-RVLHFPAQHKCSLCQQAFKRDKH 104
C K FTHKS H + + C +C + FK H
Sbjct: 8 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHH 45
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 27.6 bits (62), Expect = 0.083
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C C K F+ S L +H+ +H
Sbjct: 10 CVECGKAFSRSSILVQHQRVH 30
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 27.2 bits (61), Expect = 0.13
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C IC + F+ L H H
Sbjct: 6 CRICMRNFSRSDHLTTHIRTH 26
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 26.0 bits (58), Expect = 0.30
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
CE+C + F + L H H
Sbjct: 5 CEVCTRAFARQEHLKRHYRSH 25
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 26.0 bits (58), Expect = 0.31
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C C K F+ S L H+ +H
Sbjct: 5 CLECGKAFSQNSGLINHQRIH 25
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 25.7 bits (57), Expect = 0.45
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 33 FHCYVCKKKYRHKRQLVRHFQVNHT 57
+ C C K + L H + HT
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHT 30
Score = 25.0 bits (55), Expect = 0.76
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 65 CEICNKEFTHKSSLAEH 81
C+ C K F+ L H
Sbjct: 8 CQSCGKGFSRPDHLNGH 24
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 25.4 bits (56), Expect = 0.57
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C C K F L++H H
Sbjct: 5 CPECPKRFMRSDHLSKHIKTH 25
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 25.4 bits (56), Expect = 0.57
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C C+K F K L H +
Sbjct: 11 CSHCDKTFRQKQLLDMHFKRY 31
Score = 23.5 bits (51), Expect = 2.7
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 33 FHCYVCKKKYRHKRQLVRHFQVNHTNNY 60
+ C C K +R K+ L HF+ H N+
Sbjct: 9 YACSHCDKTFRQKQLLDMHFKRYHDPNF 36
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 25.3 bits (56), Expect = 0.68
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 33 FHCYVCKKKYRHKRQLVRHFQVNHTNN 59
+ CY+C ++ + H HT N
Sbjct: 9 YECYICHARFTQSGTMKMHILQKHTEN 35
Score = 24.6 bits (54), Expect = 1.0
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 65 CEICNKEFTHKSSLAEH 81
C IC+ FT ++ H
Sbjct: 11 CYICHARFTQSGTMKMH 27
>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 31
Score = 24.8 bits (54), Expect = 1.0
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 33 FHCYVCKKKYRHKRQLVRHFQVNHTNNY 60
+ C +C + + + L+RH Q H+ N
Sbjct: 2 YPCGLCNRAFTRRDLLIRHAQKIHSGNL 29
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 67
Score = 25.0 bits (55), Expect = 1.3
Identities = 5/48 (10%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 32 QFHCYVCKKKYRHKRQLVRHFQVNHTNNYDRVICEICNKEFTHKSSLA 79
C C + + L HF+ + ++ + + ++ + ++ + +
Sbjct: 15 LHRCLACARYFIDSTNLKTHFR---SKDHKKRLKQLSVEPYSQEEAER 59
>d1luia_ d.93.1.1 (A:) Itk/tsk protein tyrosine kinase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 108
Score = 25.4 bits (55), Expect = 2.1
Identities = 10/56 (17%), Positives = 20/56 (35%)
Query: 26 DSSLPPQFHCYVCKKKYRHKRQLVRHFQVNHTNNYDRVICEICNKEFTHKSSLAEH 81
DS P + V K + ++H+ + TN+ + F L ++
Sbjct: 35 DSRTPGTYTVSVFTKAIISENPCIKHYHIKETNDSPKRYYVAEKYVFDSIPLLIQY 90
>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger
peptide) {Drosophila melanogaster [TaxId: 7227]}
Length = 37
Score = 23.5 bits (50), Expect = 3.1
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 33 FHCYVCKKKYRHKRQLVRHFQVNHTNN 59
+ C VC + Y H RH+ +H N
Sbjct: 9 YRCKVCSRVYTHISNFCRHYVTSHKRN 35
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 23.5 bits (51), Expect = 3.1
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C C++ F+ LA HR H
Sbjct: 14 CPDCDRSFSRSDHLALHRKRH 34
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 30
Score = 23.1 bits (50), Expect = 4.0
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 66 EICNKEFTHKSSLAEHRVLH 85
E C K ++ +L H H
Sbjct: 8 EGCRKSYSRLENLKTHLRSH 27
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 35
Score = 22.8 bits (49), Expect = 4.3
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C IC FT K++ A H +H
Sbjct: 10 CRICLSAFTTKANCARHLKVH 30
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 29
Score = 22.7 bits (49), Expect = 5.1
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 66 EICNKEFTHKSSLAEHRVLH 85
E C++ F+ + L H +H
Sbjct: 8 ESCDRRFSRSADLTRHIRIH 27
>d1v33a_ d.264.1.1 (A:) DNA primase {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 346
Score = 25.0 bits (54), Expect = 5.2
Identities = 16/117 (13%), Positives = 32/117 (27%), Gaps = 1/117 (0%)
Query: 33 FHCYVCKKKYRHKRQLVRHFQVNHTNNYDRVICEICNKEFTHKSSLAEHRVLHFPAQHKC 92
+H V + R ++ + + E K +K + A
Sbjct: 150 YHIRVLDEWALKLDSKSRERILSFVSASEIEDVEEFRKLLLNKRGWFVLNHGYPRAFRLR 209
Query: 93 SLCQQAFKRDKHSKGDDIREEIEREM-KTRNSIGITVRQNQTNKNHRSGDQKKKTAK 148
+ H IR+ I + + K++ I + G + AK
Sbjct: 210 FGYFILRIKLPHLINAGIRKSIAKSILKSKEEIYEEFVRKAILAAFPQGVGIESLAK 266
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 22.8 bits (49), Expect = 5.5
Identities = 9/21 (42%), Positives = 9/21 (42%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C K F K L EH LH
Sbjct: 6 EPACGKSFNFKKHLKEHMKLH 26
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 88
Score = 24.0 bits (51), Expect = 5.6
Identities = 14/75 (18%), Positives = 24/75 (32%), Gaps = 16/75 (21%)
Query: 35 CYVCKKKYRHKRQLVRHFQVNHTNNYDRVICEICNKEF---THKSSLAEHRVLHFPAQHK 91
C VC+ Q+ + V C+ C+ + HK + + V
Sbjct: 19 CVVCR-------------QMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWY 65
Query: 92 CSLCQQAFKRDKHSK 106
C+ C + KR
Sbjct: 66 CARCTRQMKRMAQKN 80
>d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of
mitochondrial polymerase gamma, N-terminal domain {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 290
Score = 24.7 bits (53), Expect = 5.9
Identities = 3/22 (13%), Positives = 8/22 (36%)
Query: 1 MNEMKKKSVKNPNAKKRYRPYV 22
+++ + +K P V
Sbjct: 248 TYPGNVSTIQGRDGRKNVVPCV 269
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 22.3 bits (48), Expect = 6.0
Identities = 7/21 (33%), Positives = 8/21 (38%)
Query: 65 CEICNKEFTHKSSLAEHRVLH 85
C K FT L H+ H
Sbjct: 7 WSYCGKRFTRSDELQRHKRTH 27
>d2amxa1 c.1.9.1 (A:20-376) Adenosine deaminase (ADA) {Plasmodium
yoelii [TaxId: 5861]}
Length = 357
Score = 24.8 bits (53), Expect = 6.4
Identities = 8/56 (14%), Positives = 19/56 (33%), Gaps = 4/56 (7%)
Query: 44 HKRQLVRHFQVNHTNNYDRVICEIC---NKEFTHKSSLAEHRVLHFPAQ-HKCSLC 95
H ++ ++ ++ E+C N + S+ H + K S+
Sbjct: 247 HGIRVSESDELIELVKKKDILLEVCPISNLLLNNVKSMDTHPIRKLYDAGVKVSVN 302
>d1fy7a_ d.108.1.1 (A:) Histone acetyltransferase ESA1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 273
Score = 24.0 bits (52), Expect = 9.8
Identities = 8/49 (16%), Positives = 12/49 (24%), Gaps = 7/49 (14%)
Query: 64 ICEICNKEFTHKSSLAEHRVLHFPAQHKCSLCQQAFKRDKHSKGDDIRE 112
I + + F K +R KC+L E
Sbjct: 36 IDDFTLQYFGSKKQYERYR-------KKCTLRHPPGNEIYRDDYVSFFE 77
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.130 0.390
Gapped
Lambda K H
0.267 0.0625 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 581,838
Number of extensions: 26674
Number of successful extensions: 227
Number of sequences better than 10.0: 1
Number of HSP's gapped: 225
Number of HSP's successfully gapped: 87
Length of query: 159
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 81
Effective length of database: 1,336,656
Effective search space: 108269136
Effective search space used: 108269136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (22.9 bits)