BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy16648
         (56 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q13724|MOGS_HUMAN Mannosyl-oligosaccharide glucosidase OS=Homo sapiens GN=MOGS PE=1
           SV=5
          Length = 837

 Score = 46.6 bits (109), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/29 (62%), Positives = 21/29 (72%)

Query: 11  DRYWGSYRPGTYFGMKTREPYSPVVGLMW 39
           D +WG+YRP  YFGMKTR P   + GLMW
Sbjct: 93  DLFWGTYRPHVYFGMKTRSPKPLLTGLMW 121


>sp|Q19426|GCS1_CAEEL Probable mannosyl-oligosaccharide glucosidase OS=Caenorhabditis
           elegans GN=F13H10.4 PE=1 SV=2
          Length = 796

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 16/27 (59%), Positives = 22/27 (81%)

Query: 14  WGSYRPGTYFGMKTREPYSPVVGLMWF 40
           WG+YRP  YFG++TR P SP+ G+MW+
Sbjct: 89  WGTYRPHMYFGLRTRSPMSPLFGMMWY 115


>sp|Q80UM7|MOGS_MOUSE Mannosyl-oligosaccharide glucosidase OS=Mus musculus GN=Mogs PE=2
           SV=1
          Length = 834

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/27 (62%), Positives = 20/27 (74%)

Query: 13  YWGSYRPGTYFGMKTREPYSPVVGLMW 39
           +WG+YRP  YFGMKTR P   + GLMW
Sbjct: 93  FWGTYRPHVYFGMKTRSPKPLLTGLMW 119


>sp|O88941|MOGS_RAT Mannosyl-oligosaccharide glucosidase OS=Rattus norvegicus GN=Mogs
           PE=1 SV=1
          Length = 834

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/27 (62%), Positives = 20/27 (74%)

Query: 13  YWGSYRPGTYFGMKTREPYSPVVGLMW 39
           +WG+YRP  YFGMKTR P   + GLMW
Sbjct: 93  FWGTYRPHVYFGMKTRSPKPLLTGLMW 119


>sp|F4HTM3|GCS1_ARATH Mannosyl-oligosaccharide glucosidase GCS1 OS=Arabidopsis thaliana
           GN=GCS1 PE=1 SV=1
          Length = 852

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 17/28 (60%), Positives = 20/28 (71%)

Query: 13  YWGSYRPGTYFGMKTREPYSPVVGLMWF 40
           YWG+YRP  YFG++ R P S V GLMW 
Sbjct: 110 YWGTYRPHVYFGVRARTPLSLVAGLMWL 137


>sp|Q84M89|GCS2_ARATH Alpha-glucosidase 2 OS=Arabidopsis thaliana GN=GCS2 PE=2 SV=1
          Length = 789

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 17/28 (60%), Positives = 20/28 (71%)

Query: 13 YWGSYRPGTYFGMKTREPYSPVVGLMWF 40
          YWG+YRP  YFG++ R P S V GLMW 
Sbjct: 47 YWGTYRPQMYFGVRARTPKSLVAGLMWL 74


>sp|O14255|GCS1_SCHPO Probable mannosyl-oligosaccharide glucosidase
          OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
          GN=SPAC6G10.09 PE=3 SV=1
          Length = 808

 Score = 33.1 bits (74), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 8  AVRDRY-WGSYRPGTYFGMKTREPYSPVVGLMW 39
          A  D + WG YRP  Y G++ + P S + GLMW
Sbjct: 37 AANDSFLWGPYRPNLYVGIRPKIPDSLMTGLMW 69


>sp|P53008|CWH41_YEAST Mannosyl-oligosaccharide glucosidase OS=Saccharomyces cerevisiae
          (strain ATCC 204508 / S288c) GN=CWH41 PE=1 SV=1
          Length = 833

 Score = 32.3 bits (72), Expect = 1.00,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)

Query: 14 WGSYRPGTYFGMKTREPY-SPVV-GLMWF 40
          W  YR   YFGM+ R  + SP++ G+MWF
Sbjct: 47 WAPYRSNCYFGMRPRYVHESPLIMGIMWF 75


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.325    0.145    0.482 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,622,004
Number of Sequences: 539616
Number of extensions: 768311
Number of successful extensions: 1307
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1300
Number of HSP's gapped (non-prelim): 8
length of query: 56
length of database: 191,569,459
effective HSP length: 29
effective length of query: 27
effective length of database: 175,920,595
effective search space: 4749856065
effective search space used: 4749856065
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)