Query psy16648
Match_columns 56
No_of_seqs 103 out of 147
Neff 3.1
Searched_HMMs 29240
Date Fri Aug 16 18:25:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16648.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16648hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vf5_E Protein PET L; photosyn 29.7 3.8 0.00013 21.2 -1.8 8 20-27 21-28 (32)
2 2zt9_E Cytochrome B6-F complex 24.6 3.7 0.00013 21.0 -2.4 8 20-27 20-27 (31)
3 3v67_A Sensor protein CPXA; PA 22.0 42 0.0014 20.9 1.6 15 21-35 119-133 (138)
4 3o12_A Uncharacterized protein 17.0 36 0.0012 22.3 0.5 26 17-43 13-39 (221)
5 3lpz_A GET4 (YOR164C homolog); 16.2 11 0.00038 27.0 -2.3 7 21-27 291-297 (336)
6 2cs4_A Protein C12ORF2; GTP bi 15.4 38 0.0013 20.6 0.3 19 13-31 72-90 (95)
7 2wpv_A GET4, UPF0363 protein Y 15.2 23 0.00079 24.7 -0.9 8 21-28 287-294 (312)
8 3arc_E Cytochrome B559 subunit 14.1 40 0.0014 20.5 0.1 21 14-35 46-66 (83)
9 2uwq_A Apoptosis-stimulating o 14.0 40 0.0014 20.2 0.1 14 13-26 71-84 (86)
10 3o2i_A Uncharacterized protein 12.4 45 0.0015 21.4 0.0 11 17-27 13-24 (125)
No 1
>1vf5_E Protein PET L; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.24.1 PDB: 2d2c_E* 2e74_E* 2e75_E* 2e76_E*
Probab=29.68 E-value=3.8 Score=21.17 Aligned_cols=8 Identities=38% Similarity=0.833 Sum_probs=6.2
Q ss_pred Cceeeeec
Q psy16648 20 GTYFGMKT 27 (56)
Q Consensus 20 ~lYFG~r~ 27 (56)
++|||+|+
T Consensus 21 GL~fGlrs 28 (32)
T 1vf5_E 21 GIIFAIKS 28 (32)
T ss_dssp HHHTTTTT
T ss_pred HHHHHHHH
Confidence 57899875
No 2
>2zt9_E Cytochrome B6-F complex subunit 6; photosynthesis, heme B,2Fe-2S protei cytochrome F; HET: HEM UMQ CLA OPC SQD BCR; 3.00A {Nostoc SP}
Probab=24.58 E-value=3.7 Score=21.01 Aligned_cols=8 Identities=38% Similarity=1.078 Sum_probs=6.1
Q ss_pred Cceeeeec
Q psy16648 20 GTYFGMKT 27 (56)
Q Consensus 20 ~lYFG~r~ 27 (56)
++|||+|.
T Consensus 20 GL~fGLrs 27 (31)
T 2zt9_E 20 GLLFGLRS 27 (31)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 57888875
No 3
>3v67_A Sensor protein CPXA; PAS fold, signal sensing, signaling protein, merohedral twin; 2.30A {Vibrio parahaemolyticus}
Probab=22.04 E-value=42 Score=20.93 Aligned_cols=15 Identities=33% Similarity=0.563 Sum_probs=13.0
Q ss_pred ceeeeecCCCCCceE
Q psy16648 21 TYFGMKTREPYSPVV 35 (56)
Q Consensus 21 lYFG~r~R~p~sl~~ 35 (56)
+|||++-+.|.+++.
T Consensus 119 LY~~~~~~~p~pfl~ 133 (138)
T 3v67_A 119 MYVGFKWNEPPPLLL 133 (138)
T ss_dssp EEEEEECCCCCCCCC
T ss_pred EEEEeecCCCcHHHH
Confidence 899999999988763
No 4
>3o12_A Uncharacterized protein YJL217W; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.50A {Saccharomyces cerevisiae}
Probab=17.01 E-value=36 Score=22.28 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=7.0
Q ss_pred CCCCcee-eeecCCCCCceEeeeeecCC
Q psy16648 17 YRPGTYF-GMKTREPYSPVVGLMWFFPN 43 (56)
Q Consensus 17 YRp~lYF-G~r~R~p~sl~~GLmW~~~~ 43 (56)
=|.|+|| ||+.+..-++ .-+-|++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~-~~~~W~n~P 39 (221)
T 3o12_A 13 GRENLYFQGMVESKNTEL-SQGTWLNKP 39 (221)
T ss_dssp ---------------CCG-GGCEEESCC
T ss_pred ccccEEEEeccCCCCCCh-hHCEEecCC
Confidence 3678887 8888754444 445688754
No 5
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=16.23 E-value=11 Score=26.96 Aligned_cols=7 Identities=43% Similarity=1.170 Sum_probs=5.9
Q ss_pred ceeeeec
Q psy16648 21 TYFGMKT 27 (56)
Q Consensus 21 lYFG~r~ 27 (56)
+|||+++
T Consensus 291 ~YFgi~~ 297 (336)
T 3lpz_A 291 MYFGIQR 297 (336)
T ss_dssp HHHCCCC
T ss_pred HHcCCCC
Confidence 7999965
No 6
>2cs4_A Protein C12ORF2; GTP binding, ubiquitin fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=15.42 E-value=38 Score=20.60 Aligned_cols=19 Identities=21% Similarity=0.569 Sum_probs=15.2
Q ss_pred eeecCCCCceeeeecCCCC
Q psy16648 13 YWGSYRPGTYFGMKTREPY 31 (56)
Q Consensus 13 ~WGtYRp~lYFG~r~R~p~ 31 (56)
-||.+++++=|=+|-..|.
T Consensus 72 ~wG~~~~eV~F~Lr~~~~~ 90 (95)
T 2cs4_A 72 KWGQYASDVQLILRRTGPS 90 (95)
T ss_dssp TTGGGSTTCEEEEEEEECC
T ss_pred HhCcCCCceEEEEEECCCC
Confidence 3999999999988865543
No 7
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=15.18 E-value=23 Score=24.75 Aligned_cols=8 Identities=25% Similarity=0.650 Sum_probs=5.5
Q ss_pred ceeeeecC
Q psy16648 21 TYFGMKTR 28 (56)
Q Consensus 21 lYFG~r~R 28 (56)
+|||+++.
T Consensus 287 ~yFgi~~~ 294 (312)
T 2wpv_A 287 EYFNIVAP 294 (312)
T ss_dssp HHHCCC--
T ss_pred HhcCCCCC
Confidence 79999985
No 8
>3arc_E Cytochrome B559 subunit alpha; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1izl_E* 3kzi_E* 3bz1_E* 1s5l_E* 1w5c_E* 2axt_E* 3bz2_E* 3prq_E* 3prr_E* 3a0b_E* 3a0h_E*
Probab=14.09 E-value=40 Score=20.47 Aligned_cols=21 Identities=24% Similarity=0.642 Sum_probs=14.9
Q ss_pred eecCCCCceeeeecCCCCCceE
Q psy16648 14 WGSYRPGTYFGMKTREPYSPVV 35 (56)
Q Consensus 14 WGtYRp~lYFG~r~R~p~sl~~ 35 (56)
-||=|||-||- ..|..-||+.
T Consensus 46 FGtPrpneYft-~~rq~~plv~ 66 (83)
T 3arc_E 46 FGTPRPDSYYA-QEQRSIPLVT 66 (83)
T ss_dssp HTCCCTTSSSC-TTCCSCCCCC
T ss_pred cCCCCcccccc-cccccCccee
Confidence 48889999995 3455566654
No 9
>2uwq_A Apoptosis-stimulating of P53 protein 2; ASPP2, ubiquitin-like, SH3-domain, cell cycle, ANK repeat, SH3-binding; NMR {Homo sapiens}
Probab=13.98 E-value=40 Score=20.23 Aligned_cols=14 Identities=29% Similarity=0.415 Sum_probs=11.7
Q ss_pred eeecCCCCceeeee
Q psy16648 13 YWGSYRPGTYFGMK 26 (56)
Q Consensus 13 ~WGtYRp~lYFG~r 26 (56)
-||.|+|++=|=+|
T Consensus 71 ~WG~~~~eV~F~Lr 84 (86)
T 2uwq_A 71 RFGSQRNEVRFFLR 84 (86)
T ss_dssp HHCSCGGGCEEEEE
T ss_pred HHcccCCceEEEEe
Confidence 49999999888665
No 10
>3o2i_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Leptospirillum rubarum}
Probab=12.40 E-value=45 Score=21.40 Aligned_cols=11 Identities=45% Similarity=0.806 Sum_probs=0.0
Q ss_pred CCCCcee-eeec
Q psy16648 17 YRPGTYF-GMKT 27 (56)
Q Consensus 17 YRp~lYF-G~r~ 27 (56)
=|.|+|| |||-
T Consensus 13 grenlyfqgmrg 24 (125)
T 3o2i_A 13 GRENLYFQGMRG 24 (125)
T ss_dssp ------------
T ss_pred cccceeeecccC
Confidence 3678888 6664
Done!