Query psy16648
Match_columns 56
No_of_seqs 103 out of 147
Neff 3.1
Searched_HMMs 13730
Date Fri Aug 16 18:25:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16648.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/16648hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2qamg1 d.141.1.1 (G:1-81) Rib 28.8 1.1 8.3E-05 24.3 -3.0 12 9-20 59-70 (81)
2 d2zjre2 d.141.1.1 (E:5-82) Rib 27.5 0.93 6.8E-05 24.4 -3.5 10 11-20 58-67 (78)
3 d1rl6a1 d.141.1.1 (A:7-81) Rib 26.1 1 7.5E-05 24.2 -3.5 11 10-20 54-64 (75)
4 d2j01h1 d.141.1.1 (H:12-82) Ri 25.4 1 7.6E-05 23.8 -3.5 10 11-20 51-60 (71)
5 d1vqoe1 d.141.1.1 (E:1-79) Rib 22.4 1.3 9.8E-05 23.8 -3.5 10 11-20 59-68 (79)
6 d2cqla1 d.141.1.1 (A:1-87) Rib 21.3 1.5 0.00011 23.8 -3.5 11 10-20 66-76 (87)
7 d1v43a1 b.40.6.3 (A:246-299) H 18.1 19 0.0014 17.8 0.8 13 16-28 34-47 (54)
8 d1bhga1 b.1.4.1 (A:226-328) be 15.2 20 0.0014 18.6 0.4 12 11-22 60-76 (103)
9 d2axte1 f.23.38.1 (E:3-84) Cyt 14.0 19 0.0014 20.4 0.1 21 14-35 45-65 (82)
10 d2je8a1 b.1.4.1 (A:220-330) Be 12.8 29 0.0021 18.0 0.7 14 10-23 74-90 (111)
No 1
>d2qamg1 d.141.1.1 (G:1-81) Ribosomal protein L6 {Escherichia coli [TaxId: 562]}
Probab=28.84 E-value=1.1 Score=24.34 Aligned_cols=12 Identities=17% Similarity=-0.233 Sum_probs=9.3
Q ss_pred CCceeeecCCCC
Q psy16648 9 VRDRYWGSYRPG 20 (56)
Q Consensus 9 n~sl~WGtYRp~ 20 (56)
....+|||||+.
T Consensus 59 ~~~a~~GT~rsl 70 (81)
T d2qamg1 59 DGWAQAGTARAL 70 (81)
T ss_dssp TTTHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 346899999975
No 2
>d2zjre2 d.141.1.1 (E:5-82) Ribosomal protein L6 {Deinococcus radiodurans [TaxId: 1299]}
Probab=27.54 E-value=0.93 Score=24.45 Aligned_cols=10 Identities=20% Similarity=0.046 Sum_probs=8.1
Q ss_pred ceeeecCCCC
Q psy16648 11 DRYWGSYRPG 20 (56)
Q Consensus 11 sl~WGtYRp~ 20 (56)
..+|||||+.
T Consensus 58 ~a~~GT~rsl 67 (78)
T d2zjre2 58 RALHGLTRTL 67 (78)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4789999974
No 3
>d1rl6a1 d.141.1.1 (A:7-81) Ribosomal protein L6 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=26.07 E-value=1 Score=24.23 Aligned_cols=11 Identities=18% Similarity=0.178 Sum_probs=8.6
Q ss_pred CceeeecCCCC
Q psy16648 10 RDRYWGSYRPG 20 (56)
Q Consensus 10 ~sl~WGtYRp~ 20 (56)
...+|||||+.
T Consensus 54 ~~al~GT~rsl 64 (75)
T d1rl6a1 54 HRALHGTTRSL 64 (75)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 35799999975
No 4
>d2j01h1 d.141.1.1 (H:12-82) Ribosomal protein L6 {Thermus thermophilus [TaxId: 274]}
Probab=25.45 E-value=1 Score=23.84 Aligned_cols=10 Identities=20% Similarity=0.086 Sum_probs=8.0
Q ss_pred ceeeecCCCC
Q psy16648 11 DRYWGSYRPG 20 (56)
Q Consensus 11 sl~WGtYRp~ 20 (56)
..+|||||+.
T Consensus 51 ~a~~GT~rsl 60 (71)
T d2j01h1 51 KSLHGLTRTL 60 (71)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4789999964
No 5
>d1vqoe1 d.141.1.1 (E:1-79) Ribosomal protein L6 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=22.35 E-value=1.3 Score=23.76 Aligned_cols=10 Identities=10% Similarity=0.228 Sum_probs=8.1
Q ss_pred ceeeecCCCC
Q psy16648 11 DRYWGSYRPG 20 (56)
Q Consensus 11 sl~WGtYRp~ 20 (56)
..+|||||+.
T Consensus 59 ~a~~GT~rsl 68 (79)
T d1vqoe1 59 MSTIGTFQSH 68 (79)
T ss_dssp HHHHHHHHHH
T ss_pred hhhHHHHHHH
Confidence 4789999975
No 6
>d2cqla1 d.141.1.1 (A:1-87) Ribosomal protein L6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.32 E-value=1.5 Score=23.85 Aligned_cols=11 Identities=0% Similarity=-0.363 Sum_probs=8.4
Q ss_pred CceeeecCCCC
Q psy16648 10 RDRYWGSYRPG 20 (56)
Q Consensus 10 ~sl~WGtYRp~ 20 (56)
..-+|||||+.
T Consensus 66 ~~a~~GT~rsl 76 (87)
T d2cqla1 66 ELATVRTICSH 76 (87)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 35789999865
No 7
>d1v43a1 b.40.6.3 (A:246-299) Hypothetical protein PH0022, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
Probab=18.10 E-value=19 Score=17.81 Aligned_cols=13 Identities=23% Similarity=0.588 Sum_probs=9.1
Q ss_pred cCCC-CceeeeecC
Q psy16648 16 SYRP-GTYFGMKTR 28 (56)
Q Consensus 16 tYRp-~lYFG~r~R 28 (56)
.|.- .+.||+||-
T Consensus 34 ~~~g~~v~lGIRPE 47 (54)
T d1v43a1 34 DYVGKTVLFGIRPE 47 (54)
T ss_dssp GGBTSEEEEEECGG
T ss_pred hcCCCEEEEEEChh
Confidence 3443 499999985
No 8
>d1bhga1 b.1.4.1 (A:226-328) beta-Glucuronidase {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.16 E-value=20 Score=18.62 Aligned_cols=12 Identities=17% Similarity=0.213 Sum_probs=6.2
Q ss_pred ceeeec-----CCCCce
Q psy16648 11 DRYWGS-----YRPGTY 22 (56)
Q Consensus 11 sl~WGt-----YRp~lY 22 (56)
..+|.| =-|+||
T Consensus 60 p~LW~P~~w~~e~P~LY 76 (103)
T d1bhga1 60 VSLWWPYLMHERPAYLY 76 (103)
T ss_dssp CCCCCCTTTCSSCSCCE
T ss_pred ccccCCCcCCCCCCeEE
Confidence 346643 346655
No 9
>d2axte1 f.23.38.1 (E:3-84) Cytochrome b559 subunit alpha, PsbE {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=13.99 E-value=19 Score=20.41 Aligned_cols=21 Identities=24% Similarity=0.642 Sum_probs=14.8
Q ss_pred eecCCCCceeeeecCCCCCceE
Q psy16648 14 WGSYRPGTYFGMKTREPYSPVV 35 (56)
Q Consensus 14 WGtYRp~lYFG~r~R~p~sl~~ 35 (56)
-||=|||-||- ..|..-||+.
T Consensus 45 FGtPrPneYft-~~rq~~pli~ 65 (82)
T d2axte1 45 FGTPRPDSYYA-QEQRSIPLVT 65 (82)
T ss_dssp TTCCCTTCSSC-SSCCSCCCCC
T ss_pred cCCCCcccccc-cccccCcccc
Confidence 48889999995 3455556654
No 10
>d2je8a1 b.1.4.1 (A:220-330) Beta-mannosidase, domains 2, 4 and 5 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=12.81 E-value=29 Score=18.02 Aligned_cols=14 Identities=21% Similarity=0.330 Sum_probs=11.0
Q ss_pred CceeeecC---CCCcee
Q psy16648 10 RDRYWGSY---RPGTYF 23 (56)
Q Consensus 10 ~sl~WGtY---Rp~lYF 23 (56)
+..+|-|. .|+||-
T Consensus 74 ~p~LW~P~g~g~P~LY~ 90 (111)
T d2je8a1 74 NPVRWMPNGWGTPTLYD 90 (111)
T ss_dssp SCCCBCCTTSSCBCCEE
T ss_pred CccCcCCCCCCCCceEE
Confidence 45789887 999993
Done!