RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy16648
         (56 letters)



>3m1r_A Formimidoylglutamase; structural genomics, PSI-2, protein
          structure initiative, midwest center for structural
          genomics, MCSG; HET: CAC; 2.20A {Bacillus subtilis}
          Length = 322

 Score = 23.3 bits (51), Expect = 5.4
 Identities = 2/9 (22%), Positives = 2/9 (22%)

Query: 16 SYRPGTYFG 24
              G  F 
Sbjct: 52 ISHSGASFA 60


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.325    0.145    0.482 

Gapped
Lambda     K      H
   0.267   0.0768    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 920,028
Number of extensions: 38157
Number of successful extensions: 123
Number of sequences better than 10.0: 1
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 1
Length of query: 56
Length of database: 6,701,793
Length adjustment: 28
Effective length of query: 28
Effective length of database: 5,920,005
Effective search space: 165760140
Effective search space used: 165760140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.3 bits)