BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16649
(83 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 117 bits (294), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 55/59 (93%), Positives = 59/59 (100%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI+NWIRNIEE+ASA+VEKM+LGN
Sbjct: 61 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGN 119
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 117 bits (294), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 55/59 (93%), Positives = 59/59 (100%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI+NWIRNIEE+ASA+VEKM+LGN
Sbjct: 63 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGN 121
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 89.0 bits (219), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 39/59 (66%), Positives = 50/59 (84%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFRTITTAYYRGAMGI+LVYDIT+E++F NIK W + + E+A+ + +L+GN
Sbjct: 58 DTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGN 116
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 88.6 bits (218), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 38/59 (64%), Positives = 50/59 (84%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFRTITTAYYRGAMGI+LVYD+T+E++F NIK W + + E+A+ + +L+GN
Sbjct: 75 DTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGN 133
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 88.6 bits (218), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 38/59 (64%), Positives = 50/59 (84%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFRTITTAYYRGAMGI+LVYD+T+E++F NIK W + + E+A+ + +L+GN
Sbjct: 62 DTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGN 120
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 37/59 (62%), Positives = 52/59 (88%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N+K W++ I+ AS NV K+L+GN
Sbjct: 71 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 129
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 37/59 (62%), Positives = 52/59 (88%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N+K W++ I+ AS NV K+L+GN
Sbjct: 54 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 112
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 37/59 (62%), Positives = 52/59 (88%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N+K W++ I+ AS NV K+L+GN
Sbjct: 61 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 119
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 37/59 (62%), Positives = 52/59 (88%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N+K W++ I+ AS NV K+L+GN
Sbjct: 61 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 119
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 37/59 (62%), Positives = 52/59 (88%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N+K W++ I+ AS NV K+L+GN
Sbjct: 88 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 146
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 37/59 (62%), Positives = 52/59 (88%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N+K W++ I+ AS NV K+L+GN
Sbjct: 71 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 129
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 37/59 (62%), Positives = 52/59 (88%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N+K W++ I+ AS NV K+L+GN
Sbjct: 80 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 138
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 38/59 (64%), Positives = 49/59 (83%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFRTIT++YYRGA GI++VYD+T+ SFDN+K WI+ I+ A NV K+L+GN
Sbjct: 64 DTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGN 122
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 37/59 (62%), Positives = 52/59 (88%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N+K W++ I+ AS NV K+L+GN
Sbjct: 53 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 111
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 86.7 bits (213), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 38/59 (64%), Positives = 49/59 (83%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFRTITTAYYRGA GI+LVYDIT+E++F NIK W + + E+A+ + +L+GN
Sbjct: 58 DTAGQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGN 116
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 85.9 bits (211), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 37/59 (62%), Positives = 49/59 (83%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFRTITTAYYRGA GI+LVYD+T+E++F NIK W + + E+A+ + +L+GN
Sbjct: 58 DTAGQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGN 116
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 85.5 bits (210), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 36/59 (61%), Positives = 51/59 (86%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFRTIT++YYRGA GI++VYD+T+++S+ N+K W++ I+ AS NV K+L+GN
Sbjct: 64 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGN 122
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 85.5 bits (210), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 36/59 (61%), Positives = 51/59 (86%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFRTIT++YYRGA GI++VYD+T+++S+ N+K W++ I+ AS NV K+L+GN
Sbjct: 64 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGN 122
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 85.5 bits (210), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 51/58 (87%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLG 82
DTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N+K W++ I+ AS NV K+L+G
Sbjct: 63 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 120
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 82.4 bits (202), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 49/59 (83%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQER+R IT+AYYRGA+G +LVYDIT + SF+NI+ W++ + +NA +N+ +L+GN
Sbjct: 63 DTAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGN 121
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 51/59 (86%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFRTIT++YYRG+ GI++VYD+T+++SF+ +K W++ I+ A++ V K+L+GN
Sbjct: 76 DTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGN 134
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 51/59 (86%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFRTIT++YYRG+ GI++VYD+T+++SF+ +K W++ I+ A++ V K+L+GN
Sbjct: 63 DTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGN 121
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 51/59 (86%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFRTIT++YYRG+ GI++VYD+T+++SF+ +K W++ I+ A++ V K+L+GN
Sbjct: 63 DTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGN 121
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 79.3 bits (194), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 45/59 (76%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFR++T AYYR A ++L+YD+TN+ SFDNI+ W+ I E A +V MLLGN
Sbjct: 66 DTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGN 124
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 79.0 bits (193), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 48/59 (81%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQER+RTITTAYYRGAMG +L+YDITNE+SF+ +++W I+ + N + +L+GN
Sbjct: 78 DTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGN 136
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 79.0 bits (193), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 48/59 (81%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQER+RTITTAYYRGAMG +L+YDITNE+SF+ +++W I+ + N + +L+GN
Sbjct: 60 DTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGN 118
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 77.8 bits (190), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 48/59 (81%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERF +IT+AYYR A GI+LVYDIT +++FD++ W++ I++ AS + E +L+GN
Sbjct: 81 DTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGN 139
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 53/74 (71%), Gaps = 2/74 (2%)
Query: 12 RGCFQHNFHINYR--DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIE 69
+ ++H+ I + DTAGQER+RTITTAYYRGAMG +L+YDI N++SF +++W I+
Sbjct: 62 KTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIK 121
Query: 70 ENASANVEKMLLGN 83
+ N + +L+GN
Sbjct: 122 TYSWDNAQVILVGN 135
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 75.9 bits (185), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 47/59 (79%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQER+R IT+AYYRGA+G +LVYDI +++N++ W++ + ++A +N+ ML+GN
Sbjct: 75 DTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 133
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 75.9 bits (185), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 47/59 (79%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQER+R IT+AYYRGA+G +LVYDI +++N++ W++ + ++A +N+ ML+GN
Sbjct: 84 DTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 142
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 75.1 bits (183), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 47/59 (79%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQER+R IT+AYYRGA+G +LVYDI +++N++ W++ + ++A +N+ ML+GN
Sbjct: 60 DTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 118
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 44/59 (74%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQER+R IT+AYYRGA+G ++VYDI+ S++N +W+ + ENA NV L+GN
Sbjct: 68 DTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGN 126
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 44/59 (74%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFR+I +Y+R A G++L+YD+T EKSF NI+ W+ IE+ A V ML+GN
Sbjct: 83 DTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGN 141
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 51/65 (78%), Gaps = 1/65 (1%)
Query: 20 HINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENA-SANVEK 78
H+ DTAGQERFR++TTA++R AMG +L++D+T+++SF N++NW+ ++ NA N +
Sbjct: 85 HLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDI 144
Query: 79 MLLGN 83
+L+GN
Sbjct: 145 VLIGN 149
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 73.2 bits (178), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 45/59 (76%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAG ER+RTITTAYYRGA G +L YDITNE+SF+ +++W I+ + N + +L+GN
Sbjct: 63 DTAGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGN 121
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 73.2 bits (178), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 44/59 (74%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFRTIT +YYR A G +L YDIT SF ++ +WI ++ + A +N+ ++L+GN
Sbjct: 84 DTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGN 142
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 73.2 bits (178), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 50/65 (76%), Gaps = 1/65 (1%)
Query: 20 HINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENA-SANVEK 78
H+ DTAG ERFR++TTA++R AMG +L++D+TNE+SF N++NWI ++ +A S N +
Sbjct: 71 HLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDI 130
Query: 79 MLLGN 83
+L GN
Sbjct: 131 VLCGN 135
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 72.8 bits (177), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 46/59 (77%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAG ER+R IT+AYYRGA+G +LVYDI +++N++ W++ + ++A +N+ ML+GN
Sbjct: 63 DTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 121
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 72.8 bits (177), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 46/59 (77%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAG ER+R IT+AYYRGA+G +LVYDI +++N++ W++ + ++A +N+ ML+GN
Sbjct: 84 DTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 142
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 72.0 bits (175), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 47/59 (79%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQE FR+IT +YYRGA G +LVYDIT ++F+++ +W+ + +++S+N+ ML+GN
Sbjct: 76 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGN 134
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 71.6 bits (174), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 46/59 (77%), Gaps = 1/59 (1%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFRTIT+ YYRG G+++VYD+T+ +SF N+K W+ I +N +V ++L+GN
Sbjct: 64 DTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGN 121
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 41/59 (69%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQER+ ++ YYRGA ++VYDITNE+SF KNW++ ++ AS N+ L GN
Sbjct: 62 DTAGQERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGN 120
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 41/59 (69%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQER+ ++ YYRGA ++VYDITNE+SF KNW++ ++ AS N+ L GN
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGN 119
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 41/59 (69%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQER+ ++ YYRGA ++VYDITNE+SF KNW++ ++ AS N+ L GN
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGN 119
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 41/59 (69%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQER+ ++ YYRGA ++VYDITNE+SF KNW++ ++ AS N+ L GN
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGN 119
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 41/59 (69%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQER+ ++ YYRGA ++VYDITNE+SF KNW++ ++ AS N+ L GN
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGN 119
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 41/59 (69%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQER+ ++ YYRGA ++VYDITNE+SF KNW++ ++ AS N+ L GN
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGN 119
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 41/59 (69%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQER+ ++ YYRGA ++VYDITNE+SF KNW++ ++ AS N+ L GN
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGN 119
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 41/59 (69%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQER+ ++ YYRGA ++VYDITNE+SF KNW++ ++ AS N+ L GN
Sbjct: 62 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGN 120
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 43/59 (72%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAG ER+R IT+AYYRGA+G ++VYDI+ S++N +W+ + ENA NV L+GN
Sbjct: 65 DTAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGN 123
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 50/65 (76%), Gaps = 1/65 (1%)
Query: 20 HINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENA-SANVEK 78
H+ DTAG ERFR++TTA++R AMG +L++D+T+++SF N++NW+ ++ NA N +
Sbjct: 71 HLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDI 130
Query: 79 MLLGN 83
+L+GN
Sbjct: 131 VLIGN 135
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 43/59 (72%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFR+IT +YYR A ++L YDIT E+SF + W+R IE+ AS V +L+GN
Sbjct: 81 DTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGN 139
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 50/65 (76%), Gaps = 1/65 (1%)
Query: 20 HINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENA-SANVEK 78
H+ DTAG ERFR++TTA++R AMG +L++D+T+++SF N++NW+ ++ NA N +
Sbjct: 71 HLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDI 130
Query: 79 MLLGN 83
+L+GN
Sbjct: 131 VLIGN 135
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 45/59 (76%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAG ER+R IT+AYYRGA+G +LVYDI +++N++ W++ + ++A +N+ L+GN
Sbjct: 60 DTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGN 118
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 70.5 bits (171), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 45/59 (76%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAG ER+R IT+AYYRGA+G +LVYDI +++N++ W++ + ++A +N+ L+GN
Sbjct: 66 DTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGN 124
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 69.3 bits (168), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 45/59 (76%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQE FR+IT +YYRGA G +LVYDIT +F+++ W+ + +++++N+ ML+GN
Sbjct: 65 DTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGN 123
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 68.9 bits (167), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 45/59 (76%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAG ER+R IT+AYYRGA+G +LV+D+T +++ ++ W++ + ++A A + ML+GN
Sbjct: 65 DTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGN 123
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 68.6 bits (166), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 44/59 (74%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFR++T +YYRGA G +LVYDIT+ ++++ + NW+ + AS N+ +L GN
Sbjct: 66 DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGN 124
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 68.6 bits (166), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 45/59 (76%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAG ER+R IT+AYYRGA+G +LV+D+T +++ ++ W++ + ++A A + ML+GN
Sbjct: 80 DTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGN 138
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 68.6 bits (166), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 44/59 (74%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFR++T +YYRGA G +LVYDIT+ ++++++ W+ + AS N+ +L GN
Sbjct: 80 DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGN 138
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 68.6 bits (166), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 44/59 (74%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFR++T +YYRGA G +LVYDIT+ ++++ + NW+ + AS N+ +L GN
Sbjct: 65 DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGN 123
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 2/67 (2%)
Query: 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANV 76
H F I DTAGQERFR + YYRG+ ++VYDIT E++F +KNW+R + ++ ++
Sbjct: 54 HKFLI--WDTAGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSI 111
Query: 77 EKMLLGN 83
+ GN
Sbjct: 112 VVAIAGN 118
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 40/59 (67%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAG ER+ ++ YYRGA ++VYDITNE+SF KNW++ ++ AS N+ L GN
Sbjct: 60 DTAGLERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGN 118
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 39/59 (66%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQER+ ++ YYRGA ++VYDITN +F KNW++ ++ AS N+ L GN
Sbjct: 60 DTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGN 118
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 39/59 (66%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQER+ ++ YYRGA ++VYDITN +F KNW++ ++ AS N+ L GN
Sbjct: 58 DTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGN 116
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 47/65 (72%), Gaps = 1/65 (1%)
Query: 20 HINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENA-SANVEK 78
H+ DTAG ERFR++TTA++R A G +L +D+T+++SF N++NW ++ NA N +
Sbjct: 71 HLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDI 130
Query: 79 MLLGN 83
+L+GN
Sbjct: 131 VLIGN 135
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 47/65 (72%), Gaps = 1/65 (1%)
Query: 20 HINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENA-SANVEK 78
H+ DTAG ERFR++TTA++R A G +L +D+T+++SF N++NW ++ NA N +
Sbjct: 71 HLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDI 130
Query: 79 MLLGN 83
+L+GN
Sbjct: 131 VLIGN 135
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASAN-VEKMLLGN 83
DTAGQERFRT+T +YYRGA G++LVYD+T +F + NW+ +E + N + L+GN
Sbjct: 70 DTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGN 129
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 65.9 bits (159), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 40/59 (67%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQER+ ++ YYRGA ++VYDITN+++F K W++ ++ AS ++ L GN
Sbjct: 63 DTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGN 121
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 43/59 (72%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAG ERFR++T +YYRGA G +LVYDIT+ ++++ + NW+ + AS N+ +L GN
Sbjct: 63 DTAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGN 121
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 65.5 bits (158), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANV 76
H F I DTAG ERFR + YYRG+ ++VYDIT E++F +KNW+R + ++ ++
Sbjct: 55 HKFLI--WDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSI 112
Query: 77 EKMLLGN 83
+ GN
Sbjct: 113 VVAIAGN 119
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 2 GENLCTLQIFRGCFQHNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 61
G + T + G H F I DTAGQERF ++ YYRG+ ++VYDIT + SF +
Sbjct: 57 GASFMTKTVPCGNELHKFLI--WDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTL 114
Query: 62 KNWIRNIEENASANVEKMLLGN 83
K W++ ++E+ N+ + GN
Sbjct: 115 KKWVKELKEHGPENIVMAIAGN 136
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 38/59 (64%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAG ER+ ++ YYRGA ++VYDITN +F KNW++ ++ AS N+ L GN
Sbjct: 60 DTAGLERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGN 118
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 41/68 (60%)
Query: 16 QHNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASAN 75
+H DTAGQERF ++ YYR A ++VYD+T +SF ++W++ + E AS +
Sbjct: 49 EHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKD 108
Query: 76 VEKMLLGN 83
+ L+GN
Sbjct: 109 IIIALVGN 116
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 41/59 (69%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFR +T +YYRGA G ++VYDIT +++++ +W+ + + N +L+GN
Sbjct: 70 DTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGN 128
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 39/59 (66%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQER+ ++ YYRGA ++V+D+TN+ SF+ K W++ ++ + N+ L GN
Sbjct: 67 DTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGN 125
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 41/63 (65%), Gaps = 13/63 (20%)
Query: 2 GENLCTLQIFRGCFQHNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 61
G+ + T+Q++ DTAGQERF+++ A+YRGA +LVYD+TN SF+NI
Sbjct: 54 GDKVATMQVW-------------DTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENI 100
Query: 62 KNW 64
K+W
Sbjct: 101 KSW 103
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERF + YYR + G +LVYDIT+E SF +KNW++ + + + ++GN
Sbjct: 75 DTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGN 133
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERF + YYR + G +LVYDIT+E SF +KNW++ + + + ++GN
Sbjct: 61 DTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGN 119
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERF + YYR + G +LVYDIT+E SF +KNW++ + + + ++GN
Sbjct: 61 DTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGN 119
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 40/59 (67%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQ RFR +T +YYRGA G ++VYDIT +++++ +W+ + + N +L+GN
Sbjct: 85 DTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGN 143
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 39/59 (66%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFR++ +Y R + ++VYDITN +SF+N WI++I +V L+GN
Sbjct: 56 DTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGN 114
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 37/59 (62%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFR++ +Y R + ++VYDITN SF WI ++ ++V ML+GN
Sbjct: 61 DTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGN 119
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 37/59 (62%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFR++ +Y R + ++VYDITN SF WI ++ ++V ML+GN
Sbjct: 69 DTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGN 127
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 37/59 (62%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFR++ +Y R + ++VYDITN SF WI ++ ++V ML+GN
Sbjct: 57 DTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGN 115
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 37/59 (62%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFR++ +Y R + ++VYDITN SF WI ++ ++V ML+GN
Sbjct: 56 DTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGN 114
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 36/59 (61%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAG ERFR++ +Y R + ++VYDITN SF WI ++ ++V ML+GN
Sbjct: 68 DTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGN 126
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 21 INYRDTAGQERFR-TITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASAN-VEK 78
I DTAGQERFR ++ YYR ++ VYD TN SF ++ WI +++ AN + +
Sbjct: 80 IQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPR 139
Query: 79 MLLGN 83
+L+GN
Sbjct: 140 ILVGN 144
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 21 INYRDTAGQERFR-TITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASAN-VEK 78
I DTAGQERFR ++ YYR ++ VYD+TN SF ++ WI +++ AN + +
Sbjct: 71 IQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPR 130
Query: 79 MLLGN 83
+L+GN
Sbjct: 131 ILVGN 135
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 36/59 (61%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAG ERFR++ +Y R + ++VYDITN SF WI ++ ++V ML+GN
Sbjct: 71 DTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGN 129
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 36/59 (61%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAG ERFR++ +Y R + ++VYDITN SF WI ++ ++V ML+GN
Sbjct: 61 DTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGN 119
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 13/81 (16%)
Query: 3 ENLCTLQIFRGCFQHNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIK 62
ENLC N + DTAGQER+ +I YYRGA ++V+DI+N + D K
Sbjct: 88 ENLC-----------NIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAK 136
Query: 63 NWIRNIEENASANVEKMLLGN 83
W+ ++ S+N +L+ N
Sbjct: 137 TWVNQLK--ISSNYIIILVAN 155
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space
Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1)
Space Group
Length = 168
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 28/40 (70%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNW 64
DTAGQE F IT AYYRGA +LV+ T+ +SF+ I +W
Sbjct: 60 DTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSW 99
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 30/42 (71%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIR 66
DTAGQERFR++ T +YRG+ +L + + + +SF N+ NW +
Sbjct: 66 DTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKK 107
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 29/40 (72%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNW 64
DTAGQERFR++ T +YRG+ +L + + + +SF N+ NW
Sbjct: 62 DTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNW 101
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNW 64
H + DTAGQERFR++ T +YRG+ +L + + + +SF N+ NW
Sbjct: 56 HFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNW 103
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 30/40 (75%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNW 64
DTAGQERF+++ T +YRGA +L + + + +SF+N+ NW
Sbjct: 62 DTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNW 101
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 48.9 bits (115), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 29/40 (72%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNW 64
DTAGQERF+++ A+YRGA +LV+D+T +F + +W
Sbjct: 63 DTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSW 102
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 48.9 bits (115), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 29/40 (72%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNW 64
DTAGQERF+++ A+YRGA +LV+D+T +F + +W
Sbjct: 63 DTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSW 102
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 29/40 (72%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNW 64
DTAGQERF+++ A+YRGA +LV+D+T +F + +W
Sbjct: 63 DTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSW 102
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNW---IRNIEENASA 74
N + D GQ + Y GA G++LVYDITN +SF+N+++W ++ + E +
Sbjct: 55 NVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESET 114
Query: 75 NVEKMLLGN 83
L+GN
Sbjct: 115 QPLVALVGN 123
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 28/40 (70%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNW 64
DTAG ERF+++ A+YRGA +LV+D+T +F + +W
Sbjct: 63 DTAGLERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSW 102
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 22 NYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLL 81
N DTAGQE+F + YY A ++++D+T+ ++ N+ NW R++ N+ +L
Sbjct: 62 NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLC 120
Query: 82 GN 83
GN
Sbjct: 121 GN 122
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 22 NYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLL 81
N DTAGQE+F + YY A ++++D+T+ ++ N+ NW R++ N+ +L
Sbjct: 62 NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLC 120
Query: 82 GN 83
GN
Sbjct: 121 GN 122
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 22 NYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLL 81
N DTAGQE+F + YY A ++++D+T+ ++ N+ NW R++ N+ +L
Sbjct: 62 NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLC 120
Query: 82 GN 83
GN
Sbjct: 121 GN 122
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 22 NYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLL 81
N DTAGQE+F + YY A ++++D+T+ ++ N+ NW R++ N+ +L
Sbjct: 55 NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLC 113
Query: 82 GN 83
GN
Sbjct: 114 GN 115
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 22 NYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLL 81
N DTAGQE+F + YY A ++++D+T+ ++ N+ NW R++ N+ +L
Sbjct: 62 NVWDTAGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLC 120
Query: 82 GN 83
GN
Sbjct: 121 GN 122
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 22 NYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLL 81
N DTAGQE+F + YY A ++++D+T+ ++ N+ NW R++ N+ +L
Sbjct: 62 NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLC 120
Query: 82 GN 83
GN
Sbjct: 121 GN 122
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 22 NYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLL 81
N DTAGQE+F + YY A ++++D+T+ ++ N+ NW R++ N+ +L
Sbjct: 62 NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLC 120
Query: 82 GN 83
GN
Sbjct: 121 GN 122
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 22 NYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLL 81
N DTAGQE+F + YY A ++++D+T+ ++ N+ NW R++ N+ +L
Sbjct: 67 NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLC 125
Query: 82 GN 83
GN
Sbjct: 126 GN 127
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 22 NYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLL 81
N DTAGQE+F + YY A ++++D+T+ ++ N+ NW R++ N+ +L
Sbjct: 67 NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLC 125
Query: 82 GN 83
GN
Sbjct: 126 GN 127
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE-NASANV 76
FH++ DTAGQ+ + + ++ G G +LVY +T+ SF I++ + + E + V
Sbjct: 71 EFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRV 130
Query: 77 EKMLLGN 83
+L+GN
Sbjct: 131 PVVLVGN 137
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 22 NYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLL 81
N DTAGQE+F + YY A ++ +D+T+ ++ N+ NW R++ N+ +L
Sbjct: 62 NVWDTAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLC 120
Query: 82 GN 83
GN
Sbjct: 121 GN 122
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 22 NYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLL 81
N DTAGQE++ + YY A ++++D+T+ ++ N+ NW R++ N+ +L
Sbjct: 62 NVWDTAGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLC 120
Query: 82 GN 83
GN
Sbjct: 121 GN 122
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE-NASANVEKMLLGN 83
DTAGQE + + Y R G + V+ I N KSF++I + I+ S +V +L+GN
Sbjct: 57 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 21 INYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE-NASANVEKM 79
++ DTAGQE + + Y R G + V+ I N KSF++I ++ I+ S +V +
Sbjct: 54 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMV 113
Query: 80 LLGN 83
L+GN
Sbjct: 114 LVGN 117
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE-NASANVEKMLLGN 83
DTAGQE + + Y R G + V+ I N KSF++I ++ I+ S +V +L+GN
Sbjct: 58 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGN 117
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE-NASANVEKMLLGN 83
DTAGQE + + Y R G + V+ I N KSF++I ++ I+ S +V +L+GN
Sbjct: 58 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGN 117
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE-NASANVEKMLLGN 83
DTAGQE + + Y R G + V+ I N KSF++I ++ I+ S +V +L+GN
Sbjct: 58 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGN 117
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 22 NYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLL 81
N DTAG E+F + YY A ++++D+T+ ++ N+ NW R++ N+ +L
Sbjct: 58 NVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLC 116
Query: 82 GN 83
GN
Sbjct: 117 GN 118
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 22 NYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIE 69
N DTAGQE+ + YY GA G +L +D+T+ + N+ W++ +
Sbjct: 64 NVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQ 111
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE-NASANVEKMLLGN 83
DTAGQE + + Y R G + V+ I N KSF++I + I+ S +V +L+GN
Sbjct: 62 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 121
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE-NASANVEKMLLGN 83
DTAGQE + + Y R G + V+ I N KSF++I + I+ S +V +L+GN
Sbjct: 62 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 121
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 22 NYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLL 81
N DTAG E+F + YY A ++++D+T+ ++ N+ NW R++ N+ +L
Sbjct: 64 NVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLC 122
Query: 82 GN 83
GN
Sbjct: 123 GN 124
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE-NASANVEKMLLGN 83
DTAGQE + + Y R G + V+ I N KSF++I + I+ S +V +L+GN
Sbjct: 63 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 122
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE-NASANVEKMLLGN 83
DTAGQE + + Y R G + V+ I N KSF++I + I+ S +V +L+GN
Sbjct: 57 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE-NASANVEKMLLGN 83
DTAGQE + + Y R G + V+ I N KSF++I + I+ S +V +L+GN
Sbjct: 64 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 123
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE-NASANVEKMLLGN 83
DTAGQE + + Y R G + V+ I N KSF++I + I+ S +V +L+GN
Sbjct: 57 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE-NASANVEKMLLGN 83
DTAGQE + + Y R G + V+ I N KSF++I + I+ S +V +L+GN
Sbjct: 57 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE-NASANVEKMLLGN 83
DTAGQE + + Y R G + V+ I N KSF++I + I+ S +V +L+GN
Sbjct: 57 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE-NASANVEKMLLGN 83
DTAGQE + + Y R G + V+ I N KSF++I + I+ S +V +L+GN
Sbjct: 57 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE-NASANVEKMLLGN 83
DTAGQE + + Y R G + V+ I N KSF++I + I+ S +V +L+GN
Sbjct: 57 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE-NASANVEKMLLGN 83
DTAGQE + + Y R G + V+ I N KSF++I + I+ S +V +L+GN
Sbjct: 57 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE-NASANVEKMLLGN 83
DTAGQE + + Y R G + V+ I N KSF++I + I+ S +V +L+GN
Sbjct: 57 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE-NASANVEKMLLGN 83
DTAGQE + + Y R G + V+ I N KSF++I + I+ S +V +L+GN
Sbjct: 57 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE-NASANVEKMLLGN 83
DTAGQE + + Y R G + V+ I N KSF++I + I+ S +V +L+GN
Sbjct: 57 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE-NASANVEKMLLGN 83
DTAGQE + + Y R G + V+ I N KSF++I + I+ S +V +L+GN
Sbjct: 57 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE-NASANVEKMLLGN 83
DTAGQE + + Y R G + V+ I N KSF++I + I+ S +V +L+GN
Sbjct: 57 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE-NASANVEKMLLGN 83
DTAGQE + + Y R G + V+ I N KSF++I + I+ S +V +L+GN
Sbjct: 57 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE-NASANVEKMLLGN 83
DTAGQE + + Y R G + V+ I N KSF++I + I+ S +V +L+GN
Sbjct: 57 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE-NASANVEKMLLGN 83
DTAGQE + + Y R G + V+ I N KSF++I + I+ S +V +L+GN
Sbjct: 57 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE-NASANVEKMLLGN 83
DTAGQE + + Y R G + V+ I N KSF++I + I+ S +V +L+GN
Sbjct: 57 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE-NASANVEKMLLGN 83
DTAGQE + + Y R G + V+ I N KSF++I + I+ S +V +L+GN
Sbjct: 57 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE-NASANVEKMLLGN 83
DTAGQE + + Y R G + V+ I N KSF++I + I+ S +V +L+GN
Sbjct: 57 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE-NASANVEKMLLGN 83
DTAGQE + + Y R G + V+ I N KSF++I + I+ S +V +L+GN
Sbjct: 57 DTAGQEEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE-NASANVEKMLLGN 83
DTAGQE + + Y R G + V+ I N KSF++I + I+ S +V +L+GN
Sbjct: 57 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 22 NYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLL 81
N DTAG E+F + YY A ++++D+T+ ++ N+ NW R++ N+ +L
Sbjct: 62 NVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLC 120
Query: 82 GN 83
GN
Sbjct: 121 GN 122
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 20 HINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKN-WIRNI 68
H++ DTAGQ+ + + +Y A ++L +D+T+ SFDNI N W +
Sbjct: 83 HLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEV 132
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAG E+F + YY A ++++D+T+ ++ N+ NW R++ N+ +L GN
Sbjct: 60 DTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGN 117
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAG E+F + YY A ++++D+T+ ++ N+ NW R++ N+ +L GN
Sbjct: 59 DTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGN 116
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAG E+F + YY A ++++D+T+ ++ N+ NW R++ N+ +L GN
Sbjct: 67 DTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGN 124
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE-NASANVEKMLLGN 83
DTAG E + + Y R G + V+ I N KSF++I ++ I+ S +V +L+GN
Sbjct: 75 DTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGN 134
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE-NASANVEKMLLGN 83
DTAG+E + + Y R G + V+ I N KSF++I + I+ S +V +L+GN
Sbjct: 57 DTAGKEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE-NASANVEKMLLGN 83
DT GQE + + Y R G + V+ I N KSF++I + I+ S +V +L+GN
Sbjct: 57 DTGGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE-NASANVEKMLLGN 83
DT GQE + + Y R G + V+ I N KSF++I + I+ S +V +L+GN
Sbjct: 57 DTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE-NASANVEKMLLGN 83
DTAGQE + Y R G + V+ I N KSF++I + I+ S +V +L+GN
Sbjct: 57 DTAGQEEASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE-NASANVEKMLLGN 83
DTAG E + + Y R G + V+ I N KSF++I + I+ S +V +L+GN
Sbjct: 57 DTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNI 68
DTAGQE F + Y R G +LV+ +T+ SF+ I + R I
Sbjct: 59 DTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQI 102
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE-NASANVEKMLLGN 83
DTA QE + + Y R G + V+ I N KSF++I + I+ S +V +L+GN
Sbjct: 57 DTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE-NASANVEKMLLGN 83
DTA QE + + Y R G + V+ I N KSF++I + I+ S +V +L+GN
Sbjct: 57 DTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE-NASANVEKMLLGN 83
DTAGQE + + Y R G + V+ I N KSF +I + I+ S +V +L+GN
Sbjct: 75 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGN 134
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRN--IEENASANVEKMLLG 82
DTAG E+F ++ Y + G +LVY + N++SF +IK +R+ I V +L+G
Sbjct: 57 DTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKP-MRDQIIRVKRYEKVPVILVG 115
Query: 83 N 83
N
Sbjct: 116 N 116
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 21 INYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNW 64
++ DTAGQE F + Y R G ++VY +T++ SF+++ +
Sbjct: 68 LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRF 111
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 21 INYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNW 64
++ DTAGQE F + Y R G ++VY +T++ SF+++ +
Sbjct: 68 LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRF 111
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI-KNWIRNIEENASANVEKMLLGN 83
DTAGQE + + YRGA +L + + ++ S++N+ K WI ++ A V +L+G
Sbjct: 62 DTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPG-VPIVLVGT 120
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE-NASANVEKMLLGN 83
DTAG E + + Y R G + V+ I N KSF++I + I+ S +V +L+GN
Sbjct: 62 DTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 121
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 21 INYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNW 64
++ DTAGQE F + Y R G ++VY +T++ SF+++ +
Sbjct: 68 LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRF 111
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE-NASANVEKMLLGN 83
DTAG E + + Y R G + V+ I N KSF++I + I+ S +V +L+GN
Sbjct: 57 DTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE-NASANVEKMLLGN 83
DTAG E + + Y R G + V+ I N KSF++I + I+ S +V +L+GN
Sbjct: 57 DTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE-NASANVEKMLLGN 83
DTAG E + + Y R G + V+ I N KSF++I + I+ S +V +L+GN
Sbjct: 57 DTAGVEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 37.7 bits (86), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 21 INYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNW 64
++ DTAGQE F + Y R G ++VY +T++ SF+++ +
Sbjct: 63 LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRF 106
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 37.7 bits (86), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI-KNWIRNIEENASANVEKMLLGN 83
DTAGQE + + YRGA +L + + ++ S++N+ K W+ + A NV +L+G
Sbjct: 63 DTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP-NVPIVLVGT 121
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 37.7 bits (86), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSF---DNIKNWIRNIEENAS 73
I+ DTAGQE + I Y+R G + V+ IT +SF + + I ++E+
Sbjct: 60 EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED-- 117
Query: 74 ANVEKMLLGN 83
NV +L+GN
Sbjct: 118 ENVPFLLVGN 127
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE-NASANVEKMLLGN 83
DTAG E + + Y R G + V+ I N KSF++I + I+ S +V +L+GN
Sbjct: 57 DTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 20 HINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSF---DNIKNWIRNIEENASANV 76
I+ DTAGQE + I Y+R G + V+ IT +SF + + I ++E+ NV
Sbjct: 53 QIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED--ENV 110
Query: 77 EKMLLGN 83
+L+GN
Sbjct: 111 PFLLVGN 117
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE-NASANVEKMLLGN 83
DTAG E + + Y R G + V+ I N KSF++I + I+ S +V +L+GN
Sbjct: 57 DTAGIEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 20 HINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSF---DNIKNWIRNIEENASANV 76
I+ DTAGQE + I Y+R G + V+ IT +SF + + I ++E+ NV
Sbjct: 67 QIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED--ENV 124
Query: 77 EKMLLGN 83
+L+GN
Sbjct: 125 PFLLVGN 131
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 20 HINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSF---DNIKNWIRNIEENASANV 76
I+ DTAGQE + I Y+R G + V+ IT +SF + + I ++E+ NV
Sbjct: 55 QIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED--ENV 112
Query: 77 EKMLLGN 83
+L+GN
Sbjct: 113 PFLLVGN 119
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI-KNWIRNIEENASANVEKMLLGN 83
DTAGQE + + YRGA +L + + ++ S++N+ K WI + A V +L+G
Sbjct: 60 DTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPG-VPIILVGT 118
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 11 FRGCFQHNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE 70
R + N I D GQ RFR++ Y RG I+ + D +++ + KN + N+ +
Sbjct: 59 MRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLD 118
Query: 71 NAS-ANVEKMLLGN 83
+ ++LGN
Sbjct: 119 KPQLQGIPVLVLGN 132
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 11 FRGCFQHNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE 70
R + N I D GQ RFR++ Y RG I+ + D +++ + KN + N+ +
Sbjct: 68 MRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLD 127
Query: 71 NASAN-VEKMLLGN 83
+ ++LGN
Sbjct: 128 KPQLQGIPVLVLGN 141
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI-KNWIRNIEENASANVEKMLLGN 83
DTAGQE + + YRGA +L + + ++ S++NI K W+ ++ A + +L+G
Sbjct: 60 DTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPG-IPIVLVGT 118
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIK-NWIRNIEENASANV 76
+ + DTAGQE + + Y ++ + + N SF N+K W+ ++E A NV
Sbjct: 65 QYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP-NV 123
Query: 77 EKMLLGN 83
+L+G
Sbjct: 124 PFLLIGT 130
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWI-RNIEENASAN 75
+H+ DTAGQ+ + Y G +LVY +T+ KSF+ IK + ++
Sbjct: 52 QEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ 111
Query: 76 VEKMLLGN 83
+ ML+GN
Sbjct: 112 IPIMLVGN 119
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 37.0 bits (84), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIK 62
+H+ DTAGQ+ + Y G +LVY +T+ KSF+ IK
Sbjct: 52 QEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIK 97
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIK 62
+H+ DTAGQ+ + Y G +LVY +T+ KSF+ IK
Sbjct: 50 QEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIK 95
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWI-RNIEENASAN 75
+H+ DTAGQ+ + Y G +LVY +T+ KSF+ IK + ++
Sbjct: 47 QEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ 106
Query: 76 VEKMLLGN 83
+ ML+GN
Sbjct: 107 IPIMLVGN 114
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNI-EENASANVEKMLLGN 83
DTAG E+F + Y + G LVY IT + +F+++++ I + +V +L+GN
Sbjct: 57 DTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGN 116
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNI-EENASANVEKMLLGN 83
DTAG E+F + Y + G LVY IT + +F+++++ I + +V +L+GN
Sbjct: 57 DTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGN 116
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 20/102 (19%)
Query: 2 GENLCTLQIFRGCFQHNFHI----NYR---------------DTAGQERFRTITTAYYRG 42
G++ T+Q +G F + +YR DTAG E+F + Y +
Sbjct: 17 GKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKN 76
Query: 43 AMGIMLVYDITNEKSFDNIKNWIRNI-EENASANVEKMLLGN 83
G LVY IT + +F+++++ I + +V +L+GN
Sbjct: 77 GQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGN 118
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNI-EENASANVEKMLLGN 83
DTAG E+F + Y + G LVY IT + +F+++++ I + +V +L+GN
Sbjct: 57 DTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGN 116
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNI 68
DTAGQE F + Y R G +LV+ I + +SF+ + I
Sbjct: 63 DTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQI 106
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSF 58
I+ DTAG E + I Y+R G +LV+ IT +SF
Sbjct: 53 EEVQIDILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESF 94
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 11 FRGCFQHNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE 70
R + N I D GQ RFR++ Y RG I+ + D + + + +N + N+ +
Sbjct: 59 MRKVTKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLD 118
Query: 71 NASAN-VEKMLLGN 83
+ ++LGN
Sbjct: 119 KPQLQGIPVLVLGN 132
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSF 58
I+ DTAG E + I Y+R G +LV+ IT +SF
Sbjct: 49 EEVQIDILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESF 90
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 20 HINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSF---DNIKNWIRNIEENASANV 76
I+ DTAG E + I Y+R G + V+ IT +SF + + I ++E+ NV
Sbjct: 55 QIDILDTAGLEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED--ENV 112
Query: 77 EKMLLGN 83
+L+GN
Sbjct: 113 PFLLVGN 119
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKML 80
DTAG + ++ + Y+ G +LV+D+++ +SF++ K W + ++A + E+ L
Sbjct: 79 DTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWF-ELLKSARPDRERPL 133
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIK-NWIRNI 68
+ + RDTAGQE + + Y ++ + + + SF+N+K W+ I
Sbjct: 49 EPYTLGLRDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 101
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 25 DTAGQERFRTIT-TAYYRGAMGIMLVYDITNEKSFDNIKNWIRNI--EENASANVEKMLL 81
DTAGQE TI + R G +LVYDIT+ SF+ + ++NI E NV +L+
Sbjct: 82 DTAGQED--TIQREGHMRWGEGFVLVYDITDRGSFEEVLP-LKNILDEIKKPKNVTLILV 138
Query: 82 GN 83
GN
Sbjct: 139 GN 140
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 32.7 bits (73), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 19 FHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIK-NWIRNIE 69
F ++ DTAGQE + + Y + ++L + + N SFDNI W I+
Sbjct: 71 FILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIK 122
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 32.7 bits (73), Expect = 0.049, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 22/51 (43%)
Query: 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNI 68
N N D GQ++ R + YY G G++ V D + D + + I
Sbjct: 365 NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRI 415
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 32.7 bits (73), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 19 FHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 61
F ++ DTAGQE + + Y + ++L + + N SFDNI
Sbjct: 70 FILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNI 112
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 32.0 bits (71), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 22/51 (43%)
Query: 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNI 68
N N D GQ++ R + YY G G++ V D + D + + I
Sbjct: 55 NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRI 105
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 32.0 bits (71), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 22/51 (43%)
Query: 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNI 68
N N D GQ++ R + YY G G++ V D + D + + I
Sbjct: 56 NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRI 106
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 22/51 (43%)
Query: 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNI 68
N N D GQ++ R + YY G G++ V D + D + + I
Sbjct: 43 NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRI 93
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 31.6 bits (70), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI-KNWIRNIEENASANVEKMLLGN 83
DTAGQE + + Y I++ + I + S +NI + W + ++ NV +L+GN
Sbjct: 79 DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGN 137
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 22/51 (43%)
Query: 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNI 68
N N D GQ++ R + YY G G++ V D + D + + I
Sbjct: 43 NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRI 93
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI-KNWIRNIEENASANVEKMLLGN 83
DTAGQE + + Y I++ + I + S +NI + W + ++ NV +L+GN
Sbjct: 57 DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGN 115
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI-KNWIRNIEENASANVEKMLLGN 83
DTAGQE + + Y I++ + I + S +NI + W + ++ NV +L+GN
Sbjct: 60 DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGN 118
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 22/51 (43%)
Query: 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNI 68
N N D GQ++ R + YY G G++ V D + D + + I
Sbjct: 43 NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRI 93
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI-KNWIRNIEENASANVEKMLLGN 83
DTAGQE + + Y I++ + I + S +NI + W + ++ NV +L+GN
Sbjct: 61 DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGN 119
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI-KNWIRNIEENASANVEKMLLGN 83
DTAGQE + + Y I++ + I + S +NI + W + ++ NV +L+GN
Sbjct: 59 DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGN 117
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI-KNWIRNIEENASANVEKMLLGN 83
DTAGQE + + Y I++ + I + S +NI + W + ++ NV +L+GN
Sbjct: 79 DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFXPNVPIILVGN 137
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI-KNWIRNIEENASANVEKMLLGN 83
DTAGQE + + Y I++ + I + S +NI + W + ++ NV +L+GN
Sbjct: 59 DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGN 117
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI-KNWIRNIEENASANVEKMLLGN 83
DTAGQE + + Y I++ + I + S +NI + W + ++ NV +L+GN
Sbjct: 59 DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGN 117
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI-KNWIRNIEENASANVEKMLLGN 83
DTAGQE + + Y I++ + I + S +NI + W + ++ NV +L+GN
Sbjct: 62 DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGN 120
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI-KNWIRNIEENASANVEKMLLGN 83
DTAGQE + + Y I++ + I + S +NI + W + ++ NV +L+GN
Sbjct: 63 DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGN 121
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI-KNWIRNIEENASANVEKMLLGN 83
DTAGQE + + Y I++ + I + S +NI + W + ++ NV +L+GN
Sbjct: 57 DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGN 115
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI-KNWIRNIEENASANVEKMLLGN 83
DTAGQE + + Y I++ + I + S +NI + W + ++ NV +L+GN
Sbjct: 60 DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGN 118
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI-KNWIRNIEENASANVEKMLLGN 83
DTAGQE + + Y I++ + I + S +NI + W + ++ NV +L+GN
Sbjct: 61 DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGN 119
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI-KNWIRNIEENASANVEKMLLGN 83
DTAGQE + + Y I++ + I + S +NI + W + ++ NV +L+GN
Sbjct: 59 DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGN 117
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI-KNWIRNIEENASANVEKMLLGN 83
DTAGQE + + Y I++ + I + S +NI + W + ++ NV +L+GN
Sbjct: 59 DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGN 117
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI-KNWIRNIEENASANVEKMLLGN 83
DTAGQE + + Y I++ + I + S +NI + W + ++ NV +L+GN
Sbjct: 61 DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGN 119
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI-KNWIRNIEENASANVEKMLLG 82
DT+G + + Y + +++ +DI+ ++ D++ K W I+E N + +L+G
Sbjct: 82 DTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVG 139
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI-KNWIRNIEENASANVEKMLLG 82
DT+G + + Y + +++ +DI+ ++ D++ K W I+E N + +L+G
Sbjct: 61 DTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVG 118
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIK-NWIRNI 68
DTAGQE + + Y ++ + + + SF+N+K W+ I
Sbjct: 60 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 104
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIK-NWIRNI 68
DTAGQE + + Y ++ + + + SF+N+K W+ I
Sbjct: 59 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 103
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIK-NWIRNI 68
DTAGQE + + Y ++ + + + SF+N+K W+ I
Sbjct: 57 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 101
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI-KNWIRNIEENASANVEKMLLG 82
DT+G + + Y + +++ +DI+ ++ D++ K W I+E N + +L+G
Sbjct: 77 DTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVG 134
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIK-NWIRNI 68
DTAGQE + + Y ++ + + + SF+N+K W+ I
Sbjct: 57 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 101
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIK-NWIRNI 68
DTAGQE + + Y ++ + + + SF+N+K W+ I
Sbjct: 58 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 102
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIK-NWIRNI 68
DTAGQE + + Y ++ + + + SF+N+K W+ I
Sbjct: 57 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 101
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIK-NWIRNI 68
DTAGQE + + Y ++ + + + SF+N+K W+ I
Sbjct: 57 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 101
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIK-NWIRNI 68
DTAGQE + + Y ++ + + + SF+N+K W+ I
Sbjct: 60 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 104
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIK-NWIRNI 68
DTAGQE + + Y ++ + + + SF+N+K W+ I
Sbjct: 67 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 111
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIK-NWIRNI 68
DTAGQE + + Y ++ + + + SF+N+K W+ I
Sbjct: 57 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 101
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIK-NWIRNI 68
DTAGQE + + Y ++ + + + SF+N+K W+ I
Sbjct: 64 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 108
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIK-NWIRNI 68
DTAGQE + + Y ++ + + + SF+N+K W+ I
Sbjct: 57 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 101
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIK-NWIRNI 68
DTAGQE + + Y ++ + + + SF+N+K W+ I
Sbjct: 57 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 101
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI-KNWIRNIEENASANVEKMLLGN 83
DTAGQE + + Y I++ + + + S +NI + W+ + ++ NV +L+ N
Sbjct: 79 DTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEV-KHFCPNVPIILVAN 137
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIK-NWIRNI 68
DTAGQE + + Y ++ + + + SF+N+K W+ I
Sbjct: 57 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 101
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIK-NWIRNI 68
DTAGQE + + Y ++ + + + SF+N+K W+ I
Sbjct: 64 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 108
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIK-NWIRNI 68
DTAGQE + + Y ++ + + + SF+N+K W+ I
Sbjct: 61 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 105
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIK-NWIRNI 68
DTAGQE + + Y ++ + + + SF+N+K W+ I
Sbjct: 57 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 101
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIK-NWIRNI 68
DTAGQE + + Y ++ + + + SF+N+K W+ I
Sbjct: 59 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 103
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIK-NWIRNI 68
DTAGQE + + Y ++ + + + SF+N+K W+ I
Sbjct: 57 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 101
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIK-NWIRNI 68
DTAGQE + + Y ++ + + + SF+N+K W+ I
Sbjct: 57 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 101
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKS 57
N D GQ+R R++ YYR G++ V D +N++S
Sbjct: 60 NISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVD-SNDRS 98
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 17/84 (20%)
Query: 3 ENLCTLQIFRGCFQHNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIK 62
+++CTLQI DT G +F + +LVY IT+ +S + +K
Sbjct: 48 KSICTLQI-------------TDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELK 94
Query: 63 NWIRNIEENASANVEK---MLLGN 83
I E +VE ML+GN
Sbjct: 95 PIYEQICE-IKGDVESIPIMLVGN 117
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop
Core Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop
Core Complex
Length = 164
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKS 57
N D GQ+R R++ YYR G++ V D +N++S
Sbjct: 43 NISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVD-SNDRS 81
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI-KNWIRNIEENASANVEKMLLGN 83
DTAGQE + Y I++ + I + S +NI + W + ++ NV +L+GN
Sbjct: 59 DTAGQEDYDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGN 117
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKS 57
N D GQ+R R++ YYR G++ V D +N++S
Sbjct: 60 NISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVID-SNDRS 98
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI-KNWIRNI 68
DTAGQ+ F + Y +L + + + SF N+ + W+ I
Sbjct: 74 DTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEI 118
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 14 CFQH-NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKS 57
C Q+ N D GQ+R R++ YY G++ V D +N++S
Sbjct: 55 CVQYCNISFTVWDVGGQDRIRSLWRHYYCNTEGVIFVVD-SNDRS 98
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 28.5 bits (62), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI-KNWIRNIEENASANVEKMLLGN 83
DTAG E + + Y I++ + I + S +NI + W + ++ NV +L+GN
Sbjct: 62 DTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGN 120
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIK-NWIRNIEENASANVEKMLLGN 83
DTAGQE + + Y ++ + + + SF+N++ W + + N +L+G
Sbjct: 57 DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGT 115
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIK-NWIRNIEENASANVEKMLLGN 83
DTAGQE + + Y ++ + + + SF+N++ W + + N +L+G
Sbjct: 57 DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGT 115
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIK-NWIRNI 68
+ + DTAG E + + Y ++ + + + SF+N+K W+ I
Sbjct: 53 EPYTLGLFDTAGLEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 105
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIK-NWIRNI 68
DTAG E + + Y ++ + + + SF+N+K W+ I
Sbjct: 57 DTAGLEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 101
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIK-NWIRNIEENASANVEKMLLGN 83
DTAGQE + + Y ++ + + + SF+N++ W + + N +L+G
Sbjct: 67 DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGT 125
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIK-NWIRNIEENASANVEKMLLGN 83
DTAGQE + + Y ++ + + + SF+N++ W + + N +L+G
Sbjct: 57 DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGT 115
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIK-NWIRNIEENASANVEKMLLGN 83
DTAGQE + + Y ++ + + + SF+N++ W + + N +L+G
Sbjct: 57 DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGT 115
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIK-NWIRNIEENASANVEKMLLGN 83
DTAGQE + + Y ++ + + + SF+N++ W + + N +L+G
Sbjct: 57 DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGT 115
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIK-NWIRNIEENASANVEKMLLGN 83
DTAGQE + + Y ++ + + + SF+N++ W + + N +L+G
Sbjct: 84 DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGT 142
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIK-NWIRNIEENASANVEKMLLGN 83
DTAGQE + + Y ++ + + + SF+N++ W + + N +L+G
Sbjct: 84 DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGT 142
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIK-NWIRNIEENASANVEKMLLGN 83
DTAGQE + + Y ++ + + + SF+N++ W + + N +L+G
Sbjct: 57 DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGT 115
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIK-NWIRNIEENASANVEKMLLGN 83
DTAGQE + + Y ++ + + + SF+N++ W + + N +L+G
Sbjct: 76 DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGT 134
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIK-NWIRNIEENASANVEKMLLGN 83
DTAGQE + + Y ++ + + + SF+N++ W + + N +L+G
Sbjct: 64 DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGT 122
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIK-NWIRNI 68
DTAGQE + + Y + +++ + I S +N++ WI +
Sbjct: 64 DTAGQEDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEV 108
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/45 (24%), Positives = 20/45 (44%)
Query: 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIK 62
N D GQ++ R + YY G++ V D + + D+ +
Sbjct: 60 NISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAR 104
>pdb|2JK0|A Chain A, Structural And Functional Insights Into Erwinia
Carotovora L-Asparaginase
pdb|2JK0|B Chain B, Structural And Functional Insights Into Erwinia
Carotovora L-Asparaginase
pdb|2JK0|C Chain C, Structural And Functional Insights Into Erwinia
Carotovora L-Asparaginase
pdb|2JK0|D Chain D, Structural And Functional Insights Into Erwinia
Carotovora L-Asparaginase
pdb|2JK0|E Chain E, Structural And Functional Insights Into Erwinia
Carotovora L-Asparaginase
pdb|2JK0|F Chain F, Structural And Functional Insights Into Erwinia
Carotovora L-Asparaginase
pdb|2JK0|G Chain G, Structural And Functional Insights Into Erwinia
Carotovora L-Asparaginase
pdb|2JK0|H Chain H, Structural And Functional Insights Into Erwinia
Carotovora L-Asparaginase
Length = 325
Score = 25.8 bits (55), Expect = 6.5, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 27 AGQERFRTITTAYYRGAMGI-MLVYDITNEKSFDNIKNWIRNIEENASANVEKM 79
AG T TT Y GA+G+ L+ + K+ NIK E+ AS E M
Sbjct: 15 AGSAAANTQTTGYKAGALGVETLIQAVPELKTLANIKG-----EQVASIGSENM 63
>pdb|1ZCF|A Chain A, L-Asparaginase From Erwinia Carotovora
pdb|1ZCF|B Chain B, L-Asparaginase From Erwinia Carotovora
pdb|1ZCF|C Chain C, L-Asparaginase From Erwinia Carotovora
pdb|1ZCF|D Chain D, L-Asparaginase From Erwinia Carotovora
pdb|1ZCF|E Chain E, L-Asparaginase From Erwinia Carotovora
pdb|1ZCF|F Chain F, L-Asparaginase From Erwinia Carotovora
pdb|1ZCF|G Chain G, L-Asparaginase From Erwinia Carotovora
pdb|1ZCF|H Chain H, L-Asparaginase From Erwinia Carotovora
pdb|2GVN|A Chain A, L-asparaginase From Erwinia Carotovora In Complex With
Aspartic Acid
pdb|2GVN|B Chain B, L-asparaginase From Erwinia Carotovora In Complex With
Aspartic Acid
pdb|2GVN|C Chain C, L-asparaginase From Erwinia Carotovora In Complex With
Aspartic Acid
pdb|2GVN|D Chain D, L-asparaginase From Erwinia Carotovora In Complex With
Aspartic Acid
pdb|2GVN|E Chain E, L-asparaginase From Erwinia Carotovora In Complex With
Aspartic Acid
pdb|2GVN|F Chain F, L-asparaginase From Erwinia Carotovora In Complex With
Aspartic Acid
pdb|2GVN|G Chain G, L-asparaginase From Erwinia Carotovora In Complex With
Aspartic Acid
pdb|2GVN|H Chain H, L-asparaginase From Erwinia Carotovora In Complex With
Aspartic Acid
pdb|2HLN|A Chain A, L-Asparaginase From Erwinia Carotovora In Complex With
Glutamic Acid
pdb|2HLN|B Chain B, L-Asparaginase From Erwinia Carotovora In Complex With
Glutamic Acid
pdb|2HLN|E Chain E, L-Asparaginase From Erwinia Carotovora In Complex With
Glutamic Acid
pdb|2HLN|F Chain F, L-Asparaginase From Erwinia Carotovora In Complex With
Glutamic Acid
pdb|2HLN|C Chain C, L-Asparaginase From Erwinia Carotovora In Complex With
Glutamic Acid
pdb|2HLN|D Chain D, L-Asparaginase From Erwinia Carotovora In Complex With
Glutamic Acid
pdb|2HLN|G Chain G, L-Asparaginase From Erwinia Carotovora In Complex With
Glutamic Acid
pdb|2HLN|H Chain H, L-Asparaginase From Erwinia Carotovora In Complex With
Glutamic Acid
pdb|2HLN|I Chain I, L-Asparaginase From Erwinia Carotovora In Complex With
Glutamic Acid
pdb|2HLN|J Chain J, L-Asparaginase From Erwinia Carotovora In Complex With
Glutamic Acid
pdb|2HLN|K Chain K, L-Asparaginase From Erwinia Carotovora In Complex With
Glutamic Acid
pdb|2HLN|L Chain L, L-Asparaginase From Erwinia Carotovora In Complex With
Glutamic Acid
Length = 327
Score = 25.8 bits (55), Expect = 6.5, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 27 AGQERFRTITTAYYRGAMGI-MLVYDITNEKSFDNIKNWIRNIEENASANVEKM 79
AG T TT Y GA+G+ L+ + K+ NIK E+ AS E M
Sbjct: 17 AGSAAANTQTTGYKAGALGVETLIQAVPELKTLANIKG-----EQVASIGSENM 65
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 11/57 (19%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLL 81
D GQ+R R + Y++ G++ V D +N++ I+E A ++KMLL
Sbjct: 67 DVGGQDRIRPLWKHYFQNTQGLIFVVD-SNDRE---------RIQEVAD-ELQKMLL 112
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFD 59
F +N D GQ + R +Y+ ++ V D + K F+
Sbjct: 58 QGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFE 100
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 25.4 bits (54), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFD 59
F +N D GQ + R +Y+ ++ V D + K F+
Sbjct: 59 QGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFE 101
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 25.4 bits (54), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFD 59
F +N D GQ + R +Y+ ++ V D + K F+
Sbjct: 46 QGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFE 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,315,816
Number of Sequences: 62578
Number of extensions: 74027
Number of successful extensions: 499
Number of sequences better than 100.0: 279
Number of HSP's better than 100.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 260
Number of HSP's gapped (non-prelim): 279
length of query: 83
length of database: 14,973,337
effective HSP length: 51
effective length of query: 32
effective length of database: 11,781,859
effective search space: 377019488
effective search space used: 377019488
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)