BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16649
(83 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5R4A3|RAB8A_PONAB Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8A PE=2 SV=1
Length = 207
Score = 118 bits (296), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 55/59 (93%), Positives = 59/59 (100%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI+NWIRNIEE+ASA+VEKM+LGN
Sbjct: 63 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGN 121
>sp|P35280|RAB8A_RAT Ras-related protein Rab-8A OS=Rattus norvegicus GN=Rab8a PE=2 SV=2
Length = 207
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 55/59 (93%), Positives = 59/59 (100%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI+NWIRNIEE+ASA+VEKM+LGN
Sbjct: 63 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGN 121
>sp|P55258|RAB8A_MOUSE Ras-related protein Rab-8A OS=Mus musculus GN=Rab8a PE=1 SV=2
Length = 207
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 55/59 (93%), Positives = 59/59 (100%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI+NWIRNIEE+ASA+VEKM+LGN
Sbjct: 63 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGN 121
>sp|Q4R5P1|RAB8A_MACFA Ras-related protein Rab-8A OS=Macaca fascicularis GN=RAB8A PE=2
SV=1
Length = 207
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 55/59 (93%), Positives = 59/59 (100%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI+NWIRNIEE+ASA+VEKM+LGN
Sbjct: 63 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGN 121
>sp|P61006|RAB8A_HUMAN Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8A PE=1 SV=1
Length = 207
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 55/59 (93%), Positives = 59/59 (100%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI+NWIRNIEE+ASA+VEKM+LGN
Sbjct: 63 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGN 121
>sp|P61007|RAB8A_CANFA Ras-related protein Rab-8A OS=Canis familiaris GN=RAB8A PE=2 SV=1
Length = 207
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 55/59 (93%), Positives = 59/59 (100%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI+NWIRNIEE+ASA+VEKM+LGN
Sbjct: 63 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGN 121
>sp|A4FV54|RAB8A_BOVIN Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A PE=2 SV=1
Length = 207
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 55/59 (93%), Positives = 59/59 (100%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI+NWIRNIEE+ASA+VEKM+LGN
Sbjct: 63 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGN 121
>sp|P70550|RAB8B_RAT Ras-related protein Rab-8B OS=Rattus norvegicus GN=Rab8b PE=1 SV=1
Length = 207
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/59 (91%), Positives = 59/59 (100%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE+AS++VE+M+LGN
Sbjct: 63 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGN 121
>sp|P61028|RAB8B_MOUSE Ras-related protein Rab-8B OS=Mus musculus GN=Rab8b PE=1 SV=1
Length = 207
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/59 (91%), Positives = 59/59 (100%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE+AS++VE+M+LGN
Sbjct: 63 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGN 121
>sp|Q92930|RAB8B_HUMAN Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8B PE=1 SV=2
Length = 207
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 54/59 (91%), Positives = 59/59 (100%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE+AS++VE+M+LGN
Sbjct: 63 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGN 121
>sp|Q2HJI8|RAB8B_BOVIN Ras-related protein Rab-8B OS=Bos taurus GN=RAB8B PE=2 SV=1
Length = 207
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 54/59 (91%), Positives = 59/59 (100%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE+AS++VE+M+LGN
Sbjct: 63 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGN 121
>sp|Q5REC9|RAB8B_PONAB Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8B PE=2 SV=1
Length = 207
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 54/59 (91%), Positives = 59/59 (100%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE+AS++VE+M+LGN
Sbjct: 63 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGN 121
>sp|P22128|RAB8_DIPOM Ras-related protein Rab-8 OS=Diplobatis ommata PE=2 SV=1
Length = 210
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/59 (89%), Positives = 58/59 (98%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFRTITTAYYRGAMGIM VYDITNEKSFDNIKNWIRNIEE+AS++VE+M+LGN
Sbjct: 63 DTAGQERFRTITTAYYRGAMGIMKVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGN 121
>sp|Q5F470|RAB8A_CHICK Ras-related protein Rab-8A OS=Gallus gallus GN=RAB8A PE=2 SV=1
Length = 207
Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 52/59 (88%), Positives = 58/59 (98%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSF+NI+NW+RNIEE+AS +VEKM+LGN
Sbjct: 63 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFENIRNWVRNIEEHASPDVEKMILGN 121
>sp|P35286|RAB13_RAT Ras-related protein Rab-13 OS=Rattus norvegicus GN=Rab13 PE=2 SV=2
Length = 203
Score = 106 bits (264), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 47/59 (79%), Positives = 58/59 (98%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERF+TITTAYYRGAMGI+LVYDIT+EKSF+NI+NW+++I+ENASA VE++LLGN
Sbjct: 63 DTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGN 121
>sp|Q9DD03|RAB13_MOUSE Ras-related protein Rab-13 OS=Mus musculus GN=Rab13 PE=1 SV=1
Length = 202
Score = 106 bits (264), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 47/59 (79%), Positives = 58/59 (98%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERF+TITTAYYRGAMGI+LVYDIT+EKSF+NI+NW+++I+ENASA VE++LLGN
Sbjct: 63 DTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGN 121
>sp|Q5KTJ6|RAB13_MESAU Ras-related protein Rab-13 OS=Mesocricetus auratus GN=RAB13 PE=2
SV=1
Length = 203
Score = 105 bits (263), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 47/59 (79%), Positives = 58/59 (98%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERF+TITTAYYRGAMGI+LVYDIT+EKSF+NI+NW+++I+ENASA VE++LLGN
Sbjct: 63 DTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGN 121
>sp|Q58DS5|RAB13_BOVIN Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 PE=2 SV=1
Length = 203
Score = 105 bits (263), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 47/59 (79%), Positives = 58/59 (98%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERF+TITTAYYRGAMGI+LVYDIT+EKSF+NI+NW+++I+ENASA VE++LLGN
Sbjct: 63 DTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGN 121
>sp|P51153|RAB13_HUMAN Ras-related protein Rab-13 OS=Homo sapiens GN=RAB13 PE=1 SV=1
Length = 203
Score = 105 bits (263), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 47/59 (79%), Positives = 58/59 (98%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERF+TITTAYYRGAMGI+LVYDIT+EKSF+NI+NW+++I+ENASA VE++LLGN
Sbjct: 63 DTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGN 121
>sp|P20790|RAB8A_DICDI Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A
PE=3 SV=1
Length = 208
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 47/59 (79%), Positives = 56/59 (94%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFRTITTAYYRGAMGI+LVYD+T+EKSF NI+NWIRNIE++A+ +V KML+GN
Sbjct: 70 DTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGNIRNWIRNIEQHATDSVNKMLIGN 128
>sp|Q39433|RB1BV_BETVU Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB1BV PE=2 SV=1
Length = 215
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 47/59 (79%), Positives = 56/59 (94%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFRTITTAYYRGAMGI+LVYD+T+E SF+NI+NWIRNIE++AS NV K+L+GN
Sbjct: 70 DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGN 128
>sp|P28186|RAE1C_ARATH Ras-related protein RABE1c OS=Arabidopsis thaliana GN=RABE1C PE=1
SV=1
Length = 216
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 47/59 (79%), Positives = 56/59 (94%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFRTITTAYYRGAMGI+LVYD+T+E SF+NI+NWIRNIE++AS NV K+L+GN
Sbjct: 70 DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGN 128
>sp|P20791|RAB8B_DICDI Ras-related protein Rab-8B OS=Dictyostelium discoideum GN=rab8B
PE=2 SV=1
Length = 203
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 47/59 (79%), Positives = 56/59 (94%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFRTITTAYYRGAMGI+LVYD+T+EKSF +I+NWIRNIE++AS +V KML+GN
Sbjct: 70 DTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGSIRNWIRNIEQHASDSVNKMLIGN 128
>sp|O24466|RAE1A_ARATH Ras-related protein RABE1a OS=Arabidopsis thaliana GN=RABE1A PE=1
SV=1
Length = 216
Score = 103 bits (256), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 46/59 (77%), Positives = 56/59 (94%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFRTITTAYYRGAMGI+LVYD+T+E SF+NI+NWIRNIE++AS +V K+L+GN
Sbjct: 70 DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDSVNKILVGN 128
>sp|Q9LZD4|RAE1D_ARATH Ras-related protein RABE1d OS=Arabidopsis thaliana GN=RABE1D PE=1
SV=1
Length = 216
Score = 102 bits (254), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 45/59 (76%), Positives = 56/59 (94%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFRTITTAYYRGAMGI+LVYD+T+E SF+NI+NW++NIE++AS NV K+L+GN
Sbjct: 70 DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMKNIEQHASDNVNKILVGN 128
>sp|P22127|RAB10_DIPOM Ras-related protein Rab-10 OS=Diplobatis ommata PE=2 SV=1
Length = 200
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 46/59 (77%), Positives = 54/59 (91%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERF TITT+YYRGAMGIMLVYDITN KSF+NI W+RNI+E+A+ +VE+MLLGN
Sbjct: 64 DTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNIDEHANEDVERMLLGN 122
>sp|Q5ZIT5|RAB10_CHICK Ras-related protein Rab-10 OS=Gallus gallus GN=RAB10 PE=2 SV=1
Length = 200
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 46/59 (77%), Positives = 54/59 (91%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERF TITT+YYRGAMGIMLVYDITN KSF+NI W+RNI+E+A+ +VE+MLLGN
Sbjct: 64 DTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNIDEHANEDVERMLLGN 122
>sp|Q9SF91|RAE1E_ARATH Ras-related protein RABE1e OS=Arabidopsis thaliana GN=RABE1E PE=1
SV=1
Length = 218
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 44/59 (74%), Positives = 56/59 (94%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFRTITTAYYRGAMGI+LVYD+T+E SF+NI+NW++NIE++AS +V K+L+GN
Sbjct: 70 DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMKNIEQHASDSVNKILVGN 128
>sp|Q5R5U1|RAB10_PONAB Ras-related protein Rab-10 OS=Pongo abelii GN=RAB10 PE=2 SV=1
Length = 200
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 46/59 (77%), Positives = 54/59 (91%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERF TITT+YYRGAMGIMLVYDITN KSF+NI W+RNI+E+A+ +VE+MLLGN
Sbjct: 64 DTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGN 122
>sp|P61027|RAB10_MOUSE Ras-related protein Rab-10 OS=Mus musculus GN=Rab10 PE=1 SV=1
Length = 200
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 46/59 (77%), Positives = 54/59 (91%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERF TITT+YYRGAMGIMLVYDITN KSF+NI W+RNI+E+A+ +VE+MLLGN
Sbjct: 64 DTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGN 122
>sp|P61026|RAB10_HUMAN Ras-related protein Rab-10 OS=Homo sapiens GN=RAB10 PE=1 SV=1
Length = 200
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 46/59 (77%), Positives = 54/59 (91%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERF TITT+YYRGAMGIMLVYDITN KSF+NI W+RNI+E+A+ +VE+MLLGN
Sbjct: 64 DTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGN 122
>sp|P24409|RAB10_CANFA Ras-related protein Rab-10 OS=Canis familiaris GN=RAB10 PE=1 SV=1
Length = 200
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 46/59 (77%), Positives = 54/59 (91%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERF TITT+YYRGAMGIMLVYDITN KSF+NI W+RNI+E+A+ +VE+MLLGN
Sbjct: 64 DTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGN 122
>sp|P36861|YPTV2_VOLCA GTP-binding protein yptV2 OS=Volvox carteri GN=YPTV2 PE=3 SV=1
Length = 217
Score = 99.4 bits (246), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 44/59 (74%), Positives = 55/59 (93%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFRTIT+AYYRGA GI+LVYDIT+E SF+N++NW+RNIE++AS NV K+L+GN
Sbjct: 68 DTAGQERFRTITSAYYRGAQGIILVYDITDEASFNNVRNWMRNIEQHASDNVNKILVGN 126
>sp|P17609|YPT2_SCHPO GTP-binding protein ypt2 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=ypt2 PE=3 SV=1
Length = 200
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 42/59 (71%), Positives = 54/59 (91%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFRTITTAYYRGAMGI+L+YD+T++KSFDN++ W N+E++AS NV K+L+GN
Sbjct: 64 DTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGN 122
>sp|P35281|RAB10_RAT Ras-related protein Rab-10 OS=Rattus norvegicus GN=Rab10 PE=1 SV=1
Length = 200
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 44/59 (74%), Positives = 53/59 (89%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERF TITT+YYRGAMGIMLVYDITN KSF+NI W+RNI+++A+ +VE+MLL N
Sbjct: 64 DTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDQHANEDVERMLLRN 122
>sp|P41924|RYL1_YARLI Ras-like GTP-binding protein RYL1 OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=RYL1 PE=3 SV=1
Length = 203
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/59 (71%), Positives = 53/59 (89%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFRTITTAYYRGAMGI+LVYD+T+EKSF+NI+NW +N++ A+ VE +L+GN
Sbjct: 66 DTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFNNIENWYQNVQSYANEGVELILVGN 124
>sp|P28188|RAD2A_ARATH Ras-related protein RABD2a OS=Arabidopsis thaliana GN=RABD2A PE=1
SV=3
Length = 203
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 38/59 (64%), Positives = 51/59 (86%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFRTIT++YYRGA GI++VYD+T+E+SF+N+K W+ I+ AS NV K+L+GN
Sbjct: 63 DTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGN 121
>sp|P07560|SEC4_YEAST Ras-related protein SEC4 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SEC4 PE=1 SV=1
Length = 215
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 38/59 (64%), Positives = 50/59 (84%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFRTITTAYYRGAMGI+LVYD+T+E++F NIK W + + E+A+ + +L+GN
Sbjct: 75 DTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGN 133
>sp|O42819|SEC4_CANGA Ras-related protein SEC4 OS=Candida glabrata (strain ATCC 2001 /
CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=SEC4 PE=3
SV=1
Length = 215
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 38/59 (64%), Positives = 50/59 (84%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFRTITTAYYRGAMGI+LVYD+T+E++F NIK W + + E+A+ + +L+GN
Sbjct: 75 DTAGQERFRTITTAYYRGAMGIILVYDVTDERTFANIKQWFKTVNEHANDEAQLLLVGN 133
>sp|Q05974|RAB1A_LYMST Ras-related protein Rab-1A OS=Lymnaea stagnalis GN=RAB1A PE=2 SV=1
Length = 205
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 37/59 (62%), Positives = 52/59 (88%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N+K W++ I+ AS NV K+L+GN
Sbjct: 66 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 124
>sp|Q6NYB7|RAB1A_RAT Ras-related protein Rab-1A OS=Rattus norvegicus GN=Rab1A PE=1 SV=3
Length = 205
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 37/59 (62%), Positives = 52/59 (88%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N+K W++ I+ AS NV K+L+GN
Sbjct: 66 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 124
>sp|P62821|RAB1A_MOUSE Ras-related protein Rab-1A OS=Mus musculus GN=Rab1A PE=1 SV=3
Length = 205
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 37/59 (62%), Positives = 52/59 (88%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N+K W++ I+ AS NV K+L+GN
Sbjct: 66 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 124
>sp|P62820|RAB1A_HUMAN Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1A PE=1 SV=3
Length = 205
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 37/59 (62%), Positives = 52/59 (88%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N+K W++ I+ AS NV K+L+GN
Sbjct: 66 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 124
>sp|P62822|RAB1A_CANFA Ras-related protein Rab-1A OS=Canis familiaris GN=RAB1A PE=1 SV=3
Length = 205
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 37/59 (62%), Positives = 52/59 (88%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N+K W++ I+ AS NV K+L+GN
Sbjct: 66 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 124
>sp|P22125|RAB1_DIPOM Ras-related protein ORAB-1 OS=Diplobatis ommata PE=2 SV=1
Length = 202
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 37/59 (62%), Positives = 52/59 (88%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N+K W++ I+ AS NV K+L+GN
Sbjct: 63 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 121
>sp|Q05737|YPTM2_MAIZE GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1
Length = 203
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 37/59 (62%), Positives = 51/59 (86%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N+K W+ I+ AS NV K+L+GN
Sbjct: 63 DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 121
>sp|Q39571|YPTC1_CHLRE GTP-binding protein YPTC1 OS=Chlamydomonas reinhardtii GN=YPTC1
PE=3 SV=1
Length = 203
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 37/59 (62%), Positives = 51/59 (86%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N+K W+ I+ AS NV K+L+GN
Sbjct: 63 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGN 121
>sp|P40392|RIC1_ORYSJ Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1
PE=2 SV=2
Length = 202
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 37/59 (62%), Positives = 51/59 (86%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N+K W+ I+ AS NV K+L+GN
Sbjct: 63 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGN 121
>sp|Q52NJ2|RAB1A_PIG Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A PE=2 SV=3
Length = 205
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 37/59 (62%), Positives = 51/59 (86%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFRTIT++YYRGA GI++VYD+T++ SF+N+K W++ I+ AS NV K+L+GN
Sbjct: 66 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQGSFNNVKQWLQEIDRYASENVNKLLVGN 124
>sp|P31584|YPTV1_VOLCA GTP-binding protein yptV1 OS=Volvox carteri GN=YPTV1 PE=3 SV=1
Length = 203
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 37/59 (62%), Positives = 51/59 (86%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N+K W+ I+ AS NV K+L+GN
Sbjct: 63 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLAEIDRYASENVNKLLVGN 121
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,464,351
Number of Sequences: 539616
Number of extensions: 898435
Number of successful extensions: 3084
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 2311
Number of HSP's gapped (non-prelim): 784
length of query: 83
length of database: 191,569,459
effective HSP length: 54
effective length of query: 29
effective length of database: 162,430,195
effective search space: 4710475655
effective search space used: 4710475655
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)