Query psy16649
Match_columns 83
No_of_seqs 201 out of 1082
Neff 10.0
Searched_HMMs 46136
Date Fri Aug 16 18:26:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16649.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16649hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084|consensus 100.0 5.2E-36 1.1E-40 172.5 8.0 83 1-83 20-122 (205)
2 KOG0092|consensus 100.0 1.1E-33 2.4E-38 162.5 8.1 83 1-83 16-118 (200)
3 KOG0094|consensus 100.0 1.4E-32 3.1E-37 158.5 6.8 83 1-83 33-136 (221)
4 KOG0078|consensus 100.0 3.2E-32 7E-37 158.3 7.7 83 1-83 23-125 (207)
5 KOG0098|consensus 100.0 8.9E-32 1.9E-36 154.3 7.2 83 1-83 17-119 (216)
6 KOG0086|consensus 100.0 2.2E-31 4.7E-36 149.3 6.6 83 1-83 20-122 (214)
7 KOG0087|consensus 100.0 2.6E-31 5.7E-36 154.5 6.8 83 1-83 25-127 (222)
8 KOG0079|consensus 100.0 2.8E-31 6.1E-36 148.0 6.3 82 1-83 19-120 (198)
9 KOG0093|consensus 100.0 1.7E-30 3.6E-35 144.7 7.1 83 1-83 32-134 (193)
10 KOG0080|consensus 100.0 6.1E-31 1.3E-35 148.2 4.5 83 1-83 22-125 (209)
11 KOG0095|consensus 100.0 2.9E-30 6.2E-35 144.4 7.2 83 1-83 18-120 (213)
12 KOG0083|consensus 100.0 8E-30 1.7E-34 140.4 5.9 83 1-83 8-111 (192)
13 KOG0088|consensus 100.0 8.3E-30 1.8E-34 143.6 5.7 83 1-83 24-126 (218)
14 cd04120 Rab12 Rab12 subfamily. 100.0 4.1E-29 8.9E-34 147.0 8.0 83 1-83 11-113 (202)
15 cd04133 Rop_like Rop subfamily 100.0 1.3E-28 2.8E-33 142.4 7.5 82 1-83 12-113 (176)
16 KOG0394|consensus 100.0 5.5E-29 1.2E-33 142.6 5.2 83 1-83 20-126 (210)
17 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 2.4E-28 5.1E-33 141.8 7.9 82 1-83 16-117 (182)
18 cd01875 RhoG RhoG subfamily. 100.0 3.4E-28 7.3E-33 141.8 8.0 82 1-83 14-115 (191)
19 cd04121 Rab40 Rab40 subfamily. 100.0 4.6E-28 1E-32 141.3 7.8 82 1-83 17-118 (189)
20 KOG0081|consensus 100.0 7.4E-28 1.6E-32 135.8 8.2 83 1-83 20-132 (219)
21 cd04131 Rnd Rnd subfamily. Th 99.9 8.1E-28 1.8E-32 139.1 7.7 82 1-83 12-113 (178)
22 cd04102 RabL3 RabL3 (Rab-like3 99.9 1.8E-27 4E-32 140.0 7.8 83 1-83 11-137 (202)
23 KOG0393|consensus 99.9 4.4E-27 9.5E-32 136.9 8.4 82 1-83 15-117 (198)
24 KOG0091|consensus 99.9 2.3E-27 5.1E-32 134.1 6.8 83 1-83 19-124 (213)
25 smart00176 RAN Ran (Ras-relate 99.9 4.1E-27 9E-32 138.4 8.0 82 1-83 6-107 (200)
26 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.9 3.9E-27 8.4E-32 141.0 7.9 82 1-83 24-125 (232)
27 cd01874 Cdc42 Cdc42 subfamily. 99.9 9E-27 1.9E-31 134.3 7.6 82 1-83 12-113 (175)
28 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.9 2.6E-26 5.7E-31 136.8 7.9 82 1-83 12-113 (222)
29 cd01871 Rac1_like Rac1-like su 99.9 5.7E-26 1.2E-30 130.8 7.9 82 1-83 12-113 (174)
30 cd04122 Rab14 Rab14 subfamily. 99.9 7.8E-26 1.7E-30 128.9 8.3 83 1-83 13-115 (166)
31 cd04128 Spg1 Spg1p. Spg1p (se 99.9 6.2E-26 1.3E-30 131.6 7.9 82 1-83 11-112 (182)
32 cd04117 Rab15 Rab15 subfamily. 99.9 1.6E-25 3.5E-30 127.3 8.2 83 1-83 11-113 (161)
33 PLN03071 GTP-binding nuclear p 99.9 1.3E-25 2.8E-30 133.4 7.7 82 1-83 24-125 (219)
34 PF00071 Ras: Ras family; Int 99.9 1.6E-25 3.5E-30 126.8 6.8 83 1-83 10-112 (162)
35 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.9 2.7E-25 5.8E-30 127.8 7.7 83 1-83 13-115 (172)
36 cd04126 Rab20 Rab20 subfamily. 99.9 2.8E-25 6.1E-30 132.2 7.6 83 1-83 11-108 (220)
37 cd04108 Rab36_Rab34 Rab34/Rab3 99.9 4.6E-25 1E-29 126.6 8.2 83 1-83 11-114 (170)
38 cd04134 Rho3 Rho3 subfamily. 99.9 3.3E-25 7.2E-30 129.0 7.5 82 1-83 11-112 (189)
39 KOG0097|consensus 99.9 1.6E-25 3.4E-30 124.7 5.1 83 1-83 22-124 (215)
40 cd04144 Ras2 Ras2 subfamily. 99.9 6.2E-25 1.3E-29 127.9 7.4 83 1-83 10-114 (190)
41 cd01865 Rab3 Rab3 subfamily. 99.9 1.1E-24 2.3E-29 124.2 8.0 83 1-83 12-114 (165)
42 smart00174 RHO Rho (Ras homolo 99.9 8.7E-25 1.9E-29 125.1 7.7 82 1-83 9-110 (174)
43 PLN00023 GTP-binding protein; 99.9 1E-24 2.2E-29 135.2 7.9 83 1-83 32-159 (334)
44 cd04107 Rab32_Rab38 Rab38/Rab3 99.9 1.2E-24 2.5E-29 127.6 7.8 83 1-83 11-118 (201)
45 cd04124 RabL2 RabL2 subfamily. 99.9 1.5E-24 3.4E-29 123.2 8.0 82 1-83 11-112 (161)
46 cd04136 Rap_like Rap-like subf 99.9 1.3E-24 2.9E-29 122.9 7.5 83 1-83 12-114 (163)
47 cd04176 Rap2 Rap2 subgroup. T 99.9 1.6E-24 3.5E-29 122.9 7.4 83 1-83 12-114 (163)
48 cd00877 Ran Ran (Ras-related n 99.9 2.1E-24 4.6E-29 123.4 7.7 82 1-83 11-112 (166)
49 cd04175 Rap1 Rap1 subgroup. T 99.9 1.8E-24 3.9E-29 122.9 7.3 83 1-83 12-114 (164)
50 cd01867 Rab8_Rab10_Rab13_like 99.9 2.7E-24 5.8E-29 122.7 7.8 83 1-83 14-116 (167)
51 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 3.1E-24 6.7E-29 122.1 8.0 83 1-83 13-115 (166)
52 cd04127 Rab27A Rab27a subfamil 99.9 3.7E-24 8.1E-29 123.1 7.9 83 1-83 15-128 (180)
53 cd04132 Rho4_like Rho4-like su 99.9 3.6E-24 7.8E-29 124.0 7.8 82 1-83 11-113 (187)
54 cd04116 Rab9 Rab9 subfamily. 99.9 4.6E-24 9.9E-29 121.8 7.9 83 1-83 16-122 (170)
55 PTZ00369 Ras-like protein; Pro 99.9 3.5E-24 7.5E-29 124.6 7.5 83 1-83 16-118 (189)
56 cd04109 Rab28 Rab28 subfamily. 99.9 4.2E-24 9E-29 126.5 7.9 83 1-83 11-117 (215)
57 cd01864 Rab19 Rab19 subfamily. 99.9 5.1E-24 1.1E-28 121.2 8.0 83 1-83 14-116 (165)
58 cd04112 Rab26 Rab26 subfamily. 99.9 5.5E-24 1.2E-28 123.9 8.2 83 1-83 11-114 (191)
59 cd04103 Centaurin_gamma Centau 99.9 5.9E-24 1.3E-28 120.9 7.5 78 1-83 11-107 (158)
60 cd04125 RabA_like RabA-like su 99.9 8.2E-24 1.8E-28 122.8 8.2 83 1-83 11-113 (188)
61 cd01868 Rab11_like Rab11-like. 99.9 9.6E-24 2.1E-28 119.9 8.2 83 1-83 14-116 (165)
62 cd01866 Rab2 Rab2 subfamily. 99.9 1.1E-23 2.4E-28 120.3 8.1 83 1-83 15-117 (168)
63 cd04119 RJL RJL (RabJ-Like) su 99.9 1.1E-23 2.4E-28 119.3 8.1 83 1-83 11-118 (168)
64 PLN03110 Rab GTPase; Provision 99.9 1.1E-23 2.3E-28 125.0 8.3 83 1-83 23-125 (216)
65 cd04140 ARHI_like ARHI subfami 99.9 7.5E-24 1.6E-28 120.7 7.4 83 1-83 12-116 (165)
66 cd04143 Rhes_like Rhes_like su 99.9 8.4E-24 1.8E-28 127.7 8.0 83 1-83 11-121 (247)
67 cd04106 Rab23_lke Rab23-like s 99.9 9.3E-24 2E-28 119.5 7.6 82 1-83 11-114 (162)
68 cd04113 Rab4 Rab4 subfamily. 99.9 1.3E-23 2.9E-28 118.9 8.2 83 1-83 11-113 (161)
69 cd04110 Rab35 Rab35 subfamily. 99.9 1E-23 2.2E-28 123.6 7.8 82 1-83 17-118 (199)
70 cd04130 Wrch_1 Wrch-1 subfamil 99.9 9.9E-24 2.1E-28 121.0 7.4 82 1-83 11-112 (173)
71 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 1E-23 2.2E-28 120.4 6.6 82 1-83 10-107 (164)
72 cd04118 Rab24 Rab24 subfamily. 99.9 2.5E-23 5.5E-28 121.0 7.6 82 1-83 11-113 (193)
73 cd04150 Arf1_5_like Arf1-Arf5- 99.9 2.1E-23 4.6E-28 118.5 6.7 83 1-83 11-109 (159)
74 cd04138 H_N_K_Ras_like H-Ras/N 99.9 3.3E-23 7.2E-28 116.8 7.5 83 1-83 12-114 (162)
75 cd04115 Rab33B_Rab33A Rab33B/R 99.9 4E-23 8.6E-28 118.2 7.9 83 1-83 13-117 (170)
76 cd04111 Rab39 Rab39 subfamily. 99.9 3.5E-23 7.7E-28 122.4 7.9 83 1-83 13-117 (211)
77 cd01861 Rab6 Rab6 subfamily. 99.9 5E-23 1.1E-27 116.4 8.2 83 1-83 11-113 (161)
78 cd04149 Arf6 Arf6 subfamily. 99.9 2E-23 4.3E-28 119.7 6.6 83 1-83 20-118 (168)
79 smart00177 ARF ARF-like small 99.9 3E-23 6.5E-28 119.5 6.9 83 1-83 24-122 (175)
80 PLN00223 ADP-ribosylation fact 99.9 2.5E-23 5.4E-28 120.6 6.5 83 1-83 28-126 (181)
81 KOG0395|consensus 99.9 1.1E-22 2.5E-27 119.3 9.0 83 1-83 14-116 (196)
82 smart00173 RAS Ras subfamily o 99.9 1E-22 2.2E-27 115.5 7.3 83 1-83 11-113 (164)
83 cd01873 RhoBTB RhoBTB subfamil 99.9 1.1E-22 2.4E-27 119.2 7.5 64 17-83 64-128 (195)
84 PLN03108 Rab family protein; P 99.9 1.4E-22 3.1E-27 119.7 8.0 83 1-83 17-119 (210)
85 cd04101 RabL4 RabL4 (Rab-like4 99.9 1.4E-22 3.1E-27 114.9 7.6 82 1-83 11-115 (164)
86 cd04145 M_R_Ras_like M-Ras/R-R 99.9 2.2E-22 4.8E-27 113.9 7.5 83 1-83 13-115 (164)
87 smart00175 RAB Rab subfamily o 99.9 3.8E-22 8.2E-27 112.9 8.2 83 1-83 11-113 (164)
88 cd01870 RhoA_like RhoA-like su 99.9 2.9E-22 6.4E-27 114.7 7.6 82 1-83 12-113 (175)
89 cd01860 Rab5_related Rab5-rela 99.9 5.2E-22 1.1E-26 112.4 8.1 83 1-83 12-114 (163)
90 cd04177 RSR1 RSR1 subgroup. R 99.9 4E-22 8.6E-27 113.8 7.3 83 1-83 12-114 (168)
91 cd04135 Tc10 TC10 subfamily. 99.9 3.7E-22 8E-27 114.2 7.2 82 1-83 11-112 (174)
92 cd04146 RERG_RasL11_like RERG/ 99.9 4.4E-22 9.5E-27 113.2 7.2 83 1-83 10-114 (165)
93 PTZ00099 rab6; Provisional 99.9 2.2E-21 4.8E-26 112.2 10.2 67 17-83 27-93 (176)
94 PTZ00133 ADP-ribosylation fact 99.9 3.4E-22 7.3E-27 115.9 6.8 83 1-83 28-126 (182)
95 cd04158 ARD1 ARD1 subfamily. 99.9 3.5E-22 7.6E-27 114.4 6.5 83 1-83 10-108 (169)
96 cd04161 Arl2l1_Arl13_like Arl2 99.9 4.2E-22 9.1E-27 114.0 6.8 82 1-83 10-108 (167)
97 cd04123 Rab21 Rab21 subfamily. 99.9 1.1E-21 2.3E-26 110.6 8.0 83 1-83 11-113 (162)
98 cd01893 Miro1 Miro1 subfamily. 99.9 9E-22 1.9E-26 112.3 7.3 82 1-83 11-111 (166)
99 cd04142 RRP22 RRP22 subfamily. 99.9 2.1E-21 4.6E-26 114.0 7.4 83 1-83 11-124 (198)
100 cd04147 Ras_dva Ras-dva subfam 99.9 3.1E-21 6.7E-26 113.0 7.8 83 1-83 10-112 (198)
101 cd01863 Rab18 Rab18 subfamily. 99.9 4E-21 8.7E-26 108.7 8.0 83 1-83 11-114 (161)
102 PTZ00132 GTP-binding nuclear p 99.9 2.9E-21 6.3E-26 114.2 7.7 82 1-83 20-121 (215)
103 PLN03118 Rab family protein; P 99.9 3.6E-21 7.7E-26 113.6 7.7 83 1-83 25-128 (211)
104 cd04114 Rab30 Rab30 subfamily. 99.9 5.9E-21 1.3E-25 108.7 8.2 83 1-83 18-120 (169)
105 cd01892 Miro2 Miro2 subfamily. 99.9 2.2E-21 4.8E-26 111.2 6.2 81 1-83 15-116 (169)
106 COG1100 GTPase SAR1 and relate 99.8 3.7E-21 8E-26 113.6 7.3 83 1-83 16-119 (219)
107 cd04157 Arl6 Arl6 subfamily. 99.8 3.6E-21 7.9E-26 108.8 6.9 83 1-83 10-112 (162)
108 cd01862 Rab7 Rab7 subfamily. 99.8 8.6E-21 1.9E-25 108.1 8.1 83 1-83 11-117 (172)
109 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.8 5.3E-21 1.1E-25 110.8 7.2 83 1-83 14-117 (183)
110 cd04129 Rho2 Rho2 subfamily. 99.8 8.6E-21 1.9E-25 110.2 7.7 82 1-83 12-113 (187)
111 PF08477 Miro: Miro-like prote 99.8 6.3E-21 1.4E-25 103.5 6.2 82 1-83 10-116 (119)
112 cd04154 Arl2 Arl2 subfamily. 99.8 8.2E-21 1.8E-25 108.9 7.0 83 1-83 25-123 (173)
113 KOG4252|consensus 99.8 2.4E-22 5.2E-27 115.5 0.4 82 1-83 31-132 (246)
114 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.8 1.3E-20 2.8E-25 108.3 6.9 83 1-83 26-124 (174)
115 cd00157 Rho Rho (Ras homology) 99.8 2E-20 4.4E-25 106.5 7.5 82 1-83 11-112 (171)
116 cd04156 ARLTS1 ARLTS1 subfamil 99.8 1.6E-20 3.5E-25 106.1 6.9 83 1-83 10-109 (160)
117 cd04148 RGK RGK subfamily. Th 99.8 5.3E-20 1.2E-24 109.6 7.6 81 1-83 11-114 (221)
118 KOG0070|consensus 99.8 1.2E-19 2.5E-24 104.2 8.6 83 1-83 28-126 (181)
119 cd00154 Rab Rab family. Rab G 99.8 1E-19 2.2E-24 101.8 7.9 83 1-83 11-113 (159)
120 cd04139 RalA_RalB RalA/RalB su 99.8 9.9E-20 2.2E-24 102.8 7.8 83 1-83 11-113 (164)
121 cd04151 Arl1 Arl1 subfamily. 99.8 7.9E-20 1.7E-24 103.4 7.2 83 1-83 10-108 (158)
122 cd00878 Arf_Arl Arf (ADP-ribos 99.8 1.1E-19 2.5E-24 102.5 7.1 83 1-83 10-108 (158)
123 smart00178 SAR Sar1p-like memb 99.8 1E-19 2.2E-24 105.6 6.8 83 1-83 28-126 (184)
124 cd00876 Ras Ras family. The R 99.8 2.1E-19 4.7E-24 101.0 7.8 83 1-83 10-112 (160)
125 cd04137 RheB Rheb (Ras Homolog 99.8 2.6E-19 5.7E-24 103.0 7.6 83 1-83 12-114 (180)
126 cd00879 Sar1 Sar1 subfamily. 99.8 4.5E-19 9.8E-24 102.8 6.8 83 1-83 30-128 (190)
127 cd04160 Arfrp1 Arfrp1 subfamil 99.8 5.6E-19 1.2E-23 100.4 6.3 83 1-83 10-115 (167)
128 cd04159 Arl10_like Arl10-like 99.8 8.1E-19 1.7E-23 98.2 6.8 83 1-83 10-109 (159)
129 KOG0096|consensus 99.8 5.1E-19 1.1E-23 102.2 4.8 82 1-83 21-122 (216)
130 PF00025 Arf: ADP-ribosylation 99.8 1.1E-18 2.3E-23 100.8 5.8 83 1-83 25-123 (175)
131 KOG0075|consensus 99.8 6.2E-18 1.3E-22 94.6 7.4 83 1-83 31-130 (186)
132 KOG1673|consensus 99.7 1.1E-17 2.3E-22 94.5 7.3 80 1-80 31-130 (205)
133 KOG0073|consensus 99.7 9.9E-18 2.1E-22 94.9 7.1 83 1-83 27-125 (185)
134 KOG0071|consensus 99.7 3E-17 6.6E-22 91.3 7.2 83 1-83 28-126 (180)
135 cd04105 SR_beta Signal recogni 99.7 2.4E-17 5.1E-22 97.2 6.6 83 1-83 11-117 (203)
136 KOG4423|consensus 99.7 1.1E-19 2.4E-24 104.9 -3.6 83 1-83 36-143 (229)
137 cd01890 LepA LepA subfamily. 99.7 2E-17 4.2E-22 95.0 5.3 62 18-83 66-127 (179)
138 KOG3883|consensus 99.7 8.5E-17 1.8E-21 90.6 5.5 83 1-83 20-126 (198)
139 cd04155 Arl3 Arl3 subfamily. 99.7 2.1E-16 4.6E-21 90.3 6.8 83 1-83 25-123 (173)
140 KOG0074|consensus 99.7 3.2E-16 7E-21 87.3 5.7 83 1-83 28-127 (185)
141 cd01898 Obg Obg subfamily. Th 99.6 5.2E-16 1.1E-20 88.3 4.9 83 1-83 11-122 (170)
142 cd01891 TypA_BipA TypA (tyrosi 99.6 9.7E-16 2.1E-20 89.5 5.5 79 1-83 13-125 (194)
143 TIGR00231 small_GTP small GTP- 99.6 4.6E-15 1E-19 82.4 5.8 83 1-83 12-116 (161)
144 cd01897 NOG NOG1 is a nucleola 99.6 5.9E-15 1.3E-19 83.8 5.5 81 1-83 11-121 (168)
145 cd00882 Ras_like_GTPase Ras-li 99.6 2.5E-14 5.5E-19 78.6 7.8 83 1-83 7-110 (157)
146 cd04171 SelB SelB subfamily. 99.6 8.1E-15 1.8E-19 82.7 5.9 77 1-83 11-112 (164)
147 cd01878 HflX HflX subfamily. 99.6 8.4E-15 1.8E-19 85.9 5.4 82 1-83 52-161 (204)
148 cd01887 IF2_eIF5B IF2/eIF5B (i 99.6 1.3E-14 2.9E-19 82.2 5.8 76 1-83 11-110 (168)
149 TIGR02528 EutP ethanolamine ut 99.5 4.4E-15 9.6E-20 82.6 2.0 75 1-83 11-96 (142)
150 TIGR03156 GTP_HflX GTP-binding 99.5 3.2E-14 7E-19 89.8 6.0 82 1-83 200-309 (351)
151 KOG0076|consensus 99.5 1.2E-14 2.7E-19 83.2 3.6 67 17-83 67-134 (197)
152 cd01881 Obg_like The Obg-like 99.5 6.1E-14 1.3E-18 80.0 5.1 83 1-83 7-128 (176)
153 TIGR01393 lepA GTP-binding pro 99.5 7.3E-14 1.6E-18 93.1 5.5 62 18-83 69-130 (595)
154 PRK03003 GTP-binding protein D 99.5 1.1E-13 2.4E-18 90.1 5.4 79 1-83 49-154 (472)
155 TIGR00450 mnmE_trmE_thdF tRNA 99.5 1.2E-13 2.6E-18 89.4 5.1 78 1-83 214-318 (442)
156 cd01879 FeoB Ferrous iron tran 99.4 2.5E-13 5.4E-18 76.3 5.5 77 1-83 7-109 (158)
157 PRK12299 obgE GTPase CgtA; Rev 99.4 2E-13 4.3E-18 85.8 5.4 83 1-83 169-279 (335)
158 KOG1707|consensus 99.4 1.3E-13 2.7E-18 90.5 4.2 83 1-83 20-123 (625)
159 PRK04213 GTP-binding protein; 99.4 1.9E-14 4.1E-19 84.2 0.1 83 1-83 20-138 (201)
160 KOG0072|consensus 99.4 1.2E-12 2.7E-17 73.3 6.7 83 1-83 29-127 (182)
161 TIGR00491 aIF-2 translation in 99.4 3.9E-13 8.4E-18 89.5 5.4 56 21-83 71-129 (590)
162 PRK03003 GTP-binding protein D 99.4 6.7E-13 1.5E-17 86.5 6.0 79 1-83 222-330 (472)
163 cd04167 Snu114p Snu114p subfam 99.4 6.6E-13 1.4E-17 78.6 4.9 62 18-83 70-131 (213)
164 TIGR02729 Obg_CgtA Obg family 99.4 7.9E-13 1.7E-17 82.9 5.3 83 1-83 168-281 (329)
165 cd00881 GTP_translation_factor 99.4 1.5E-12 3.3E-17 74.8 5.4 79 1-83 10-122 (189)
166 PRK11058 GTPase HflX; Provisio 99.4 1.5E-12 3.1E-17 84.1 5.8 83 1-83 208-317 (426)
167 CHL00189 infB translation init 99.4 1.4E-12 2.9E-17 88.6 5.6 76 1-83 255-355 (742)
168 PRK05291 trmE tRNA modificatio 99.4 7.9E-13 1.7E-17 85.8 4.3 77 1-83 226-329 (449)
169 PRK05306 infB translation init 99.3 1.6E-12 3.4E-17 88.7 4.6 76 1-83 301-397 (787)
170 cd04164 trmE TrmE (MnmE, ThdF, 99.3 3.3E-12 7E-17 71.4 4.9 77 1-83 12-115 (157)
171 TIGR00487 IF-2 translation ini 99.3 2.2E-12 4.9E-17 85.9 4.6 76 1-83 98-195 (587)
172 cd04168 TetM_like Tet(M)-like 99.3 3.7E-12 7.9E-17 76.8 4.7 63 17-83 62-124 (237)
173 PRK05433 GTP-binding protein L 99.3 5E-12 1.1E-16 84.5 5.6 62 18-83 73-134 (600)
174 cd01894 EngA1 EngA1 subfamily. 99.3 3.6E-12 7.8E-17 71.3 4.3 79 1-83 8-113 (157)
175 PRK00093 GTP-binding protein D 99.3 6.1E-12 1.3E-16 81.1 5.4 77 1-83 12-117 (435)
176 PRK04004 translation initiatio 99.3 1.3E-11 2.9E-16 82.3 6.1 56 21-83 73-131 (586)
177 PRK12297 obgE GTPase CgtA; Rev 99.2 1.8E-11 3.9E-16 79.0 5.6 83 1-83 169-282 (424)
178 PRK15494 era GTPase Era; Provi 99.2 2E-11 4.3E-16 76.9 5.1 78 1-83 63-168 (339)
179 cd04169 RF3 RF3 subfamily. Pe 99.2 2.1E-11 4.5E-16 74.7 4.9 63 17-83 69-131 (267)
180 TIGR00437 feoB ferrous iron tr 99.2 1.8E-11 3.8E-16 81.8 4.7 77 1-83 5-107 (591)
181 KOG0077|consensus 99.2 2.8E-11 6.1E-16 69.2 4.8 83 1-83 31-129 (193)
182 TIGR00436 era GTP-binding prot 99.2 3.2E-11 7E-16 73.8 5.4 78 1-83 11-115 (270)
183 TIGR03594 GTPase_EngA ribosome 99.2 3.1E-11 6.7E-16 77.7 5.3 79 1-83 183-291 (429)
184 TIGR01394 TypA_BipA GTP-bindin 99.2 3.7E-11 7.9E-16 80.3 5.4 63 17-83 62-124 (594)
185 TIGR00483 EF-1_alpha translati 99.2 2.4E-11 5.3E-16 78.4 4.1 65 17-83 83-149 (426)
186 smart00010 small_GTPase Small 99.2 3.9E-11 8.5E-16 64.9 4.2 75 1-83 11-85 (124)
187 TIGR00475 selB selenocysteine- 99.2 6.6E-11 1.4E-15 79.0 5.9 76 1-83 11-111 (581)
188 cd00880 Era_like Era (E. coli 99.2 4.2E-11 9.1E-16 66.4 4.2 79 1-83 7-112 (163)
189 PRK10218 GTP-binding protein; 99.2 6.4E-11 1.4E-15 79.3 5.5 63 17-83 66-128 (607)
190 PRK09518 bifunctional cytidyla 99.2 6.8E-11 1.5E-15 80.4 5.5 78 1-83 286-391 (712)
191 PRK13351 elongation factor G; 99.2 8E-11 1.7E-15 79.7 5.8 63 17-83 71-133 (687)
192 PRK09518 bifunctional cytidyla 99.2 8E-11 1.7E-15 80.1 5.7 79 1-83 461-569 (712)
193 cd01889 SelB_euk SelB subfamil 99.2 8.6E-11 1.9E-15 68.5 5.1 62 18-83 67-128 (192)
194 TIGR03594 GTPase_EngA ribosome 99.1 1.3E-10 2.9E-15 74.8 5.8 79 1-83 10-115 (429)
195 PRK15467 ethanolamine utilizat 99.1 3.7E-11 8.1E-16 68.4 2.8 75 1-83 12-99 (158)
196 COG2229 Predicted GTPase [Gene 99.1 5.3E-10 1.2E-14 64.7 7.2 64 17-83 66-129 (187)
197 cd01895 EngA2 EngA2 subfamily. 99.1 2.6E-10 5.6E-15 64.5 5.6 79 1-83 13-121 (174)
198 PF04670 Gtr1_RagA: Gtr1/RagA 99.1 1.3E-10 2.8E-15 69.9 4.5 79 1-80 10-116 (232)
199 cd01885 EF2 EF2 (for archaea a 99.1 3.4E-10 7.4E-15 67.8 6.0 62 18-83 72-133 (222)
200 TIGR03598 GTPase_YsxC ribosome 99.1 2.8E-10 6.1E-15 65.7 4.8 79 1-83 29-137 (179)
201 cd04163 Era Era subfamily. Er 99.0 5.3E-10 1.2E-14 62.6 4.8 78 1-83 14-119 (168)
202 PRK00741 prfC peptide chain re 99.0 4.9E-10 1.1E-14 74.1 5.1 63 17-83 77-139 (526)
203 PRK12296 obgE GTPase CgtA; Rev 99.0 6.6E-10 1.4E-14 73.0 5.5 83 1-83 170-292 (500)
204 PF09439 SRPRB: Signal recogni 99.0 1.1E-10 2.3E-15 68.0 1.6 83 1-83 14-120 (181)
205 PRK12317 elongation factor 1-a 99.0 5.1E-10 1.1E-14 72.3 4.3 65 17-83 82-147 (425)
206 PRK00454 engB GTP-binding prot 99.0 9.1E-10 2E-14 64.0 4.9 79 1-83 35-143 (196)
207 cd00066 G-alpha G protein alph 99.0 5.2E-09 1.1E-13 65.6 8.2 67 17-83 159-236 (317)
208 PRK12298 obgE GTPase CgtA; Rev 99.0 1.5E-09 3.3E-14 69.6 5.5 83 1-83 170-283 (390)
209 TIGR00503 prfC peptide chain r 99.0 1.3E-09 2.8E-14 72.2 5.3 63 17-83 78-140 (527)
210 PRK00089 era GTPase Era; Revie 99.0 1.1E-09 2.3E-14 67.6 4.6 78 1-83 16-121 (292)
211 cd04170 EF-G_bact Elongation f 99.0 1.7E-09 3.6E-14 66.2 5.3 63 17-83 62-124 (268)
212 PRK00093 GTP-binding protein D 99.0 2E-09 4.3E-14 69.6 5.6 79 1-83 184-292 (435)
213 cd01896 DRG The developmentall 98.9 1.6E-09 3.4E-14 65.3 4.8 67 1-67 11-103 (233)
214 smart00275 G_alpha G protein a 98.9 1.6E-08 3.4E-13 64.1 8.5 67 17-83 182-259 (342)
215 cd01876 YihA_EngB The YihA (En 98.9 7.6E-09 1.7E-13 58.1 5.5 77 1-83 10-118 (170)
216 TIGR03680 eif2g_arch translati 98.8 6.6E-09 1.4E-13 66.9 4.8 37 19-55 80-116 (406)
217 PRK12740 elongation factor G; 98.8 9.8E-09 2.1E-13 69.6 5.2 63 17-83 58-120 (668)
218 TIGR00157 ribosome small subun 98.8 1.1E-08 2.3E-13 62.2 4.8 51 30-83 24-75 (245)
219 TIGR00484 EF-G translation elo 98.8 8.9E-09 1.9E-13 70.1 4.9 63 17-83 73-135 (689)
220 PRK10512 selenocysteinyl-tRNA- 98.8 2.5E-08 5.3E-13 67.2 6.3 61 1-61 11-96 (614)
221 TIGR00490 aEF-2 translation el 98.8 9.5E-09 2.1E-13 70.2 4.4 62 18-83 85-146 (720)
222 PRK09554 feoB ferrous iron tra 98.8 1.8E-08 3.9E-13 69.3 5.5 77 1-83 14-120 (772)
223 PF00009 GTP_EFTU: Elongation 98.8 1.7E-08 3.8E-13 58.7 4.5 62 18-83 69-130 (188)
224 cd01886 EF-G Elongation factor 98.7 2.7E-08 6E-13 61.2 5.3 63 17-83 62-124 (270)
225 cd04104 p47_IIGP_like p47 (47- 98.7 1.5E-08 3.2E-13 59.5 4.0 76 1-83 12-115 (197)
226 PF01926 MMR_HSR1: 50S ribosom 98.7 6.3E-08 1.4E-12 52.2 6.1 77 1-83 10-115 (116)
227 cd01888 eIF2_gamma eIF2-gamma 98.7 7.1E-08 1.5E-12 56.9 6.1 59 19-83 83-145 (203)
228 KOG0090|consensus 98.7 2.2E-07 4.7E-12 55.4 8.0 83 1-83 49-153 (238)
229 cd01850 CDC_Septin CDC/Septin. 98.7 2.6E-08 5.6E-13 61.4 3.7 28 1-28 15-72 (276)
230 PRK14845 translation initiatio 98.7 1E-07 2.2E-12 67.3 6.8 56 21-83 528-586 (1049)
231 cd01899 Ygr210 Ygr210 subfamil 98.6 1.2E-07 2.7E-12 59.5 4.8 36 19-54 69-111 (318)
232 cd04165 GTPBP1_like GTPBP1-lik 98.6 2.8E-07 6E-12 55.4 5.7 61 19-83 84-146 (224)
233 KOG0705|consensus 98.6 1.1E-07 2.3E-12 63.3 4.2 78 1-83 41-137 (749)
234 KOG3886|consensus 98.5 3.1E-07 6.7E-12 55.6 5.3 62 17-79 51-120 (295)
235 cd04166 CysN_ATPS CysN_ATPS su 98.5 8.4E-07 1.8E-11 52.5 6.8 38 18-55 76-113 (208)
236 cd01883 EF1_alpha Eukaryotic e 98.4 1E-06 2.3E-11 52.5 6.1 39 17-55 75-113 (219)
237 PF02421 FeoB_N: Ferrous iron 98.3 7.7E-07 1.7E-11 50.9 3.5 77 1-83 11-113 (156)
238 PRK12739 elongation factor G; 98.3 1.1E-06 2.5E-11 60.0 4.9 63 17-83 71-133 (691)
239 cd01884 EF_Tu EF-Tu subfamily. 98.2 3.1E-06 6.6E-11 49.9 5.1 38 18-55 64-101 (195)
240 PRK04000 translation initiatio 98.2 6.3E-06 1.4E-10 53.5 6.9 59 19-83 85-147 (411)
241 PLN03126 Elongation factor Tu; 98.2 3.4E-06 7.3E-11 55.7 5.0 38 18-55 143-180 (478)
242 TIGR00485 EF-Tu translation el 98.2 1.7E-05 3.6E-10 51.2 8.1 37 18-54 74-110 (394)
243 COG1160 Predicted GTPases [Gen 98.1 7.5E-06 1.6E-10 53.4 5.5 77 1-83 14-120 (444)
244 PRK09602 translation-associate 98.1 7.4E-06 1.6E-10 53.0 5.4 35 19-53 72-113 (396)
245 PLN00043 elongation factor 1-a 98.1 5.1E-06 1.1E-10 54.5 4.1 42 17-59 83-124 (447)
246 COG0532 InfB Translation initi 98.1 1.2E-05 2.6E-10 53.2 5.7 58 19-83 55-115 (509)
247 KOG0468|consensus 98.1 9.3E-06 2E-10 55.5 5.0 63 17-83 195-257 (971)
248 COG3596 Predicted GTPase [Gene 98.1 5E-06 1.1E-10 51.4 3.4 65 1-65 50-140 (296)
249 PLN00116 translation elongatio 98.1 8.9E-06 1.9E-10 56.9 5.0 62 18-83 97-158 (843)
250 PRK05506 bifunctional sulfate 98.0 1E-05 2.3E-10 54.9 4.9 37 19-55 104-140 (632)
251 COG1159 Era GTPase [General fu 98.0 1.8E-05 4E-10 49.2 4.9 78 1-83 17-122 (298)
252 CHL00071 tufA elongation facto 98.0 2.2E-05 4.9E-10 50.9 5.2 38 18-55 74-111 (409)
253 PRK00007 elongation factor G; 97.9 2.7E-05 5.9E-10 53.5 5.3 63 17-83 73-135 (693)
254 PTZ00416 elongation factor 2; 97.9 2.6E-05 5.6E-10 54.6 5.1 62 18-83 91-152 (836)
255 PRK12736 elongation factor Tu; 97.9 0.00012 2.6E-09 47.3 7.7 37 18-54 74-110 (394)
256 COG1084 Predicted GTPase [Gene 97.9 4.9E-05 1.1E-09 48.1 5.4 81 1-83 179-288 (346)
257 TIGR00991 3a0901s02IAP34 GTP-b 97.9 3.5E-05 7.6E-10 48.5 4.7 54 1-54 49-130 (313)
258 COG0486 ThdF Predicted GTPase 97.8 4.4E-05 9.5E-10 50.0 4.5 78 1-83 228-332 (454)
259 PRK12735 elongation factor Tu; 97.8 0.00016 3.6E-09 46.7 6.9 38 18-55 74-111 (396)
260 PLN03127 Elongation factor Tu; 97.8 9E-05 1.9E-09 48.7 5.6 37 19-55 124-160 (447)
261 cd01852 AIG1 AIG1 (avrRpt2-ind 97.7 0.00026 5.7E-09 41.4 6.5 54 1-54 11-95 (196)
262 COG0480 FusA Translation elong 97.7 5.1E-05 1.1E-09 52.2 3.8 62 18-83 75-136 (697)
263 KOG1423|consensus 97.6 9.1E-05 2E-09 46.8 3.9 55 1-55 83-168 (379)
264 cd01853 Toc34_like Toc34-like 97.6 0.00015 3.3E-09 44.3 4.8 54 1-54 42-126 (249)
265 PF00503 G-alpha: G-protein al 97.6 0.00044 9.5E-09 44.6 7.1 66 18-83 235-311 (389)
266 PF10662 PduV-EutP: Ethanolami 97.6 4.7E-05 1E-09 43.0 2.3 57 1-57 12-78 (143)
267 TIGR02034 CysN sulfate adenyly 97.6 0.00027 5.9E-09 45.9 5.8 39 17-55 78-116 (406)
268 COG2262 HflX GTPases [General 97.6 0.00024 5.2E-09 46.1 5.4 83 1-83 203-312 (411)
269 KOG3887|consensus 97.6 8.1E-05 1.8E-09 45.7 3.1 54 1-54 38-113 (347)
270 KOG1145|consensus 97.6 0.00019 4.1E-09 48.4 4.9 58 19-83 201-261 (683)
271 KOG1707|consensus 97.6 0.00018 4E-09 48.4 4.8 80 1-82 436-533 (625)
272 COG1163 DRG Predicted GTPase [ 97.5 0.00013 2.8E-09 46.3 3.5 67 1-67 74-166 (365)
273 PF05783 DLIC: Dynein light in 97.5 0.00031 6.8E-09 46.6 4.9 72 1-72 36-131 (472)
274 KOG0082|consensus 97.5 0.0014 2.9E-08 42.1 7.5 67 17-83 193-270 (354)
275 COG0481 LepA Membrane GTPase L 97.4 0.00035 7.5E-09 46.5 4.7 49 17-65 74-122 (603)
276 COG4108 PrfC Peptide chain rel 97.4 0.00015 3.3E-09 47.6 2.9 38 17-54 79-116 (528)
277 KOG1489|consensus 97.4 0.00055 1.2E-08 43.4 5.3 83 1-83 207-320 (366)
278 PRK13768 GTPase; Provisional 97.4 0.00054 1.2E-08 41.9 5.1 63 20-83 98-170 (253)
279 PRK05124 cysN sulfate adenylyl 97.4 0.00055 1.2E-08 45.4 5.5 38 18-55 106-143 (474)
280 TIGR03597 GTPase_YqeH ribosome 97.3 0.00028 6E-09 45.2 3.2 50 28-83 49-98 (360)
281 cd01855 YqeH YqeH. YqeH is an 97.3 0.00036 7.9E-09 40.6 3.1 46 32-83 24-69 (190)
282 PRK07560 elongation factor EF- 97.1 0.0015 3.3E-08 45.4 5.6 38 18-55 86-123 (731)
283 KOG0462|consensus 97.1 0.0036 7.8E-08 42.4 6.9 40 16-55 122-161 (650)
284 PF00350 Dynamin_N: Dynamin fa 97.1 0.0018 3.8E-08 36.7 4.9 53 19-71 101-157 (168)
285 cd01854 YjeQ_engC YjeQ/EngC. 97.1 0.0015 3.3E-08 40.7 4.9 42 39-83 75-117 (287)
286 PRK00049 elongation factor Tu; 97.0 0.011 2.3E-07 38.5 8.1 38 18-55 74-111 (396)
287 KOG1954|consensus 97.0 0.00062 1.4E-08 44.2 2.3 60 20-80 148-218 (532)
288 KOG1144|consensus 97.0 0.0026 5.7E-08 44.6 5.3 58 19-83 540-600 (1064)
289 PRK12289 GTPase RsgA; Reviewed 97.0 0.0018 4E-08 41.5 4.4 48 33-83 80-128 (352)
290 COG0218 Predicted GTPase [Gene 96.9 0.0027 5.9E-08 37.7 4.5 77 1-83 35-143 (200)
291 PRK00098 GTPase RsgA; Reviewed 96.9 0.0019 4.1E-08 40.5 4.0 40 41-83 79-119 (298)
292 KOG3905|consensus 96.9 0.0028 6.1E-08 40.7 4.5 72 1-72 63-158 (473)
293 KOG1191|consensus 96.8 0.0018 4E-08 43.1 3.6 52 1-52 279-358 (531)
294 PF04548 AIG1: AIG1 family; I 96.8 0.0023 4.9E-08 38.1 3.6 53 1-53 11-94 (212)
295 TIGR02836 spore_IV_A stage IV 96.7 0.0033 7.2E-08 41.6 4.2 39 42-83 144-188 (492)
296 TIGR00993 3a0901s04IAP86 chlor 96.7 0.0072 1.6E-07 42.0 5.6 73 1-73 129-232 (763)
297 COG1217 TypA Predicted membran 96.6 0.0015 3.3E-08 43.5 2.3 38 17-54 66-103 (603)
298 COG5256 TEF1 Translation elong 96.6 0.005 1.1E-07 40.3 4.5 40 17-56 83-122 (428)
299 PRK12288 GTPase RsgA; Reviewed 96.6 0.0045 9.8E-08 39.7 4.2 39 42-83 120-158 (347)
300 COG2895 CysN GTPases - Sulfate 96.6 0.0023 5E-08 41.3 2.8 36 17-52 84-119 (431)
301 COG1160 Predicted GTPases [Gen 96.6 0.0091 2E-07 39.4 5.5 60 1-60 189-278 (444)
302 cd01900 YchF YchF subfamily. 96.4 0.0054 1.2E-07 38.2 3.6 34 20-53 63-103 (274)
303 PTZ00327 eukaryotic translatio 96.3 0.022 4.8E-07 37.9 6.3 37 19-55 117-153 (460)
304 cd01859 MJ1464 MJ1464. This f 96.3 0.0075 1.6E-07 33.9 3.4 48 32-83 2-49 (156)
305 PTZ00258 GTP-binding protein; 96.2 0.0097 2.1E-07 38.8 4.2 34 20-53 86-126 (390)
306 cd01882 BMS1 Bms1. Bms1 is an 96.2 0.013 2.8E-07 35.3 4.5 53 1-56 50-117 (225)
307 PF06858 NOG1: Nucleolar GTP-b 96.2 0.046 1E-06 26.3 5.4 40 43-83 14-55 (58)
308 PTZ00141 elongation factor 1- 96.2 0.016 3.5E-07 38.4 5.1 38 17-54 83-120 (446)
309 PRK09866 hypothetical protein; 96.2 0.028 6.2E-07 39.2 6.2 64 18-83 229-297 (741)
310 cd01857 HSR1_MMR1 HSR1/MMR1. 96.1 0.0032 6.8E-08 35.1 1.3 15 1-15 94-108 (141)
311 cd01857 HSR1_MMR1 HSR1/MMR1. 96.1 0.011 2.4E-07 32.8 3.5 42 38-83 7-50 (141)
312 COG0536 Obg Predicted GTPase [ 95.9 0.018 3.9E-07 37.1 4.2 83 1-83 170-283 (369)
313 PF05049 IIGP: Interferon-indu 95.8 0.006 1.3E-07 39.6 1.7 51 1-51 46-123 (376)
314 KOG0099|consensus 95.7 0.12 2.6E-06 32.6 7.1 38 17-54 200-237 (379)
315 KOG0465|consensus 95.7 0.036 7.9E-07 38.2 5.2 38 17-54 102-139 (721)
316 cd01859 MJ1464 MJ1464. This f 95.6 0.0027 5.9E-08 35.7 -0.2 13 1-13 112-124 (156)
317 KOG1532|consensus 95.3 0.012 2.7E-07 37.1 1.8 14 17-30 114-127 (366)
318 TIGR03348 VI_IcmF type VI secr 95.2 0.071 1.5E-06 39.3 5.7 42 42-83 201-251 (1169)
319 PRK09601 GTP-binding protein Y 95.2 0.072 1.6E-06 34.6 5.0 34 20-53 67-107 (364)
320 cd01856 YlqF YlqF. Proteins o 95.0 0.0062 1.4E-07 35.0 -0.1 15 1-15 126-140 (171)
321 COG0370 FeoB Fe2+ transport sy 94.9 0.091 2E-06 36.5 5.1 57 1-57 14-96 (653)
322 cd02038 FleN-like FleN is a me 94.8 0.34 7.3E-06 26.9 6.8 61 19-83 45-105 (139)
323 KOG0458|consensus 94.7 0.076 1.6E-06 36.4 4.2 38 17-54 253-290 (603)
324 KOG0464|consensus 94.6 0.017 3.7E-07 38.4 1.1 38 17-54 100-137 (753)
325 cd03110 Fer4_NifH_child This p 94.5 0.2 4.4E-06 28.7 5.4 61 17-83 91-151 (179)
326 PF13173 AAA_14: AAA domain 94.1 0.036 7.8E-07 30.3 1.7 15 1-15 13-27 (128)
327 cd02067 B12-binding B12 bindin 94.1 0.23 4.9E-06 26.8 4.8 39 45-83 51-89 (119)
328 COG4917 EutP Ethanolamine util 93.9 0.034 7.3E-07 31.2 1.2 57 1-57 12-79 (148)
329 PRK05416 glmZ(sRNA)-inactivati 93.8 0.15 3.2E-06 32.1 4.1 65 1-71 17-83 (288)
330 KOG0467|consensus 93.6 0.25 5.4E-06 35.2 5.1 50 17-66 70-123 (887)
331 COG3276 SelB Selenocysteine-sp 93.4 0.21 4.6E-06 33.2 4.4 37 17-53 48-84 (447)
332 COG4963 CpaE Flp pilus assembl 93.4 0.45 9.8E-06 31.0 5.8 64 17-83 216-279 (366)
333 TIGR03596 GTPase_YlqF ribosome 93.4 0.037 7.9E-07 34.3 0.9 29 1-29 129-173 (276)
334 PF03029 ATP_bind_1: Conserved 93.2 0.3 6.6E-06 29.8 4.6 62 20-83 92-164 (238)
335 PHA02518 ParA-like protein; Pr 93.1 0.65 1.4E-05 27.1 6.0 51 17-70 75-128 (211)
336 PF00735 Septin: Septin; Inte 93.1 0.04 8.6E-07 34.5 0.8 12 17-28 61-72 (281)
337 cd03111 CpaE_like This protein 93.0 0.73 1.6E-05 24.4 6.5 61 20-83 44-105 (106)
338 cd04178 Nucleostemin_like Nucl 93.0 0.026 5.7E-07 32.7 -0.1 14 1-14 128-141 (172)
339 cd01851 GBP Guanylate-binding 92.9 0.17 3.8E-06 30.5 3.3 31 1-31 18-72 (224)
340 cd01858 NGP_1 NGP-1. Autoanti 92.6 0.26 5.7E-06 27.7 3.7 16 40-55 6-21 (157)
341 cd00009 AAA The AAA+ (ATPases 92.6 0.41 9E-06 25.6 4.4 14 1-14 30-43 (151)
342 cd01394 radB RadB. The archaea 92.5 0.24 5.1E-06 29.4 3.5 55 1-55 30-86 (218)
343 PF03709 OKR_DC_1_N: Orn/Lys/A 92.2 0.6 1.3E-05 25.3 4.6 40 42-83 36-75 (115)
344 KOG4273|consensus 92.2 0.16 3.5E-06 31.9 2.5 27 42-68 78-104 (418)
345 PRK09563 rbgA GTPase YlqF; Rev 92.1 0.044 9.5E-07 34.2 0.0 29 1-29 132-176 (287)
346 cd02042 ParA ParA and ParB of 92.0 0.99 2.1E-05 23.4 6.1 45 19-66 40-84 (104)
347 COG1161 Predicted GTPases [Gen 91.8 0.039 8.5E-07 35.1 -0.4 29 1-29 143-187 (322)
348 cd02071 MM_CoA_mut_B12_BD meth 91.8 0.91 2E-05 24.7 5.0 40 42-83 50-89 (122)
349 cd01849 YlqF_related_GTPase Yl 91.6 0.37 7.9E-06 27.1 3.4 26 46-71 32-57 (155)
350 smart00053 DYNc Dynamin, GTPas 91.2 1.6 3.5E-05 26.8 6.1 63 18-83 124-200 (240)
351 TIGR02237 recomb_radB DNA repa 90.8 0.44 9.5E-06 28.0 3.4 56 1-56 23-80 (209)
352 cd01393 recA_like RecA is a b 90.8 1.1 2.4E-05 26.6 5.1 28 1-28 30-63 (226)
353 KOG1486|consensus 90.7 0.35 7.6E-06 30.5 2.9 68 1-68 73-166 (364)
354 PF14784 ECIST_Cterm: C-termin 90.2 0.93 2E-05 25.2 4.1 39 42-80 83-123 (126)
355 COG1010 CobJ Precorrin-3B meth 90.1 1.4 3E-05 27.3 5.0 44 40-83 152-195 (249)
356 KOG0461|consensus 89.9 0.27 5.9E-06 32.3 2.1 35 17-54 68-105 (522)
357 PF05673 DUF815: Protein of un 89.8 0.27 5.9E-06 30.4 1.9 51 1-53 63-116 (249)
358 PRK13796 GTPase YqeH; Provisio 89.1 0.92 2E-05 29.5 4.0 48 30-83 57-104 (365)
359 KOG1491|consensus 89.0 0.38 8.3E-06 31.3 2.2 37 17-53 82-125 (391)
360 KOG1490|consensus 88.8 0.81 1.8E-05 31.4 3.6 80 1-83 179-289 (620)
361 KOG0469|consensus 88.4 0.36 7.8E-06 33.2 1.9 38 17-54 96-133 (842)
362 COG3640 CooC CO dehydrogenase 88.1 1.8 3.9E-05 26.9 4.6 43 17-63 132-175 (255)
363 cd01856 YlqF YlqF. Proteins o 87.9 0.59 1.3E-05 26.7 2.4 26 31-56 8-33 (171)
364 PF01580 FtsK_SpoIIIE: FtsK/Sp 86.2 0.44 9.5E-06 28.0 1.3 29 1-29 49-81 (205)
365 PRK02261 methylaspartate mutas 86.0 3.1 6.8E-05 23.3 4.6 40 42-83 54-93 (137)
366 cd01123 Rad51_DMC1_radA Rad51_ 85.7 3.2 6.9E-05 24.8 4.8 13 1-13 30-42 (235)
367 KOG1143|consensus 85.5 8.9 0.00019 25.9 6.9 19 17-35 247-265 (591)
368 PF03193 DUF258: Protein of un 85.5 0.22 4.7E-06 28.8 -0.2 14 1-14 46-59 (161)
369 PRK04195 replication factor C 85.5 2.1 4.5E-05 28.8 4.2 25 1-25 50-74 (482)
370 COG0012 Predicted GTPase, prob 85.3 0.98 2.1E-05 29.6 2.6 37 17-53 65-108 (372)
371 PF10551 MULE: MULE transposas 85.0 2.5 5.5E-05 21.4 3.7 37 44-81 25-61 (93)
372 COG1660 Predicted P-loop-conta 84.8 4 8.8E-05 25.8 4.9 30 43-72 51-80 (286)
373 KOG0463|consensus 84.7 9.9 0.00021 25.7 7.1 15 20-34 220-234 (641)
374 PF00004 AAA: ATPase family as 84.6 0.26 5.6E-06 26.4 -0.2 14 1-14 9-22 (132)
375 COG4962 CpaF Flp pilus assembl 84.0 0.3 6.6E-06 31.6 -0.1 27 1-27 184-210 (355)
376 COG3523 IcmF Type VI protein s 83.8 5.7 0.00012 30.1 6.0 43 41-83 213-264 (1188)
377 COG5258 GTPBP1 GTPase [General 83.7 5.5 0.00012 26.8 5.4 33 20-52 202-236 (527)
378 TIGR03420 DnaA_homol_Hda DnaA 83.6 0.63 1.4E-05 27.6 1.1 26 1-26 49-74 (226)
379 COG4615 PvdE ABC-type sideroph 83.6 0.26 5.6E-06 33.0 -0.6 70 1-70 360-433 (546)
380 KOG0410|consensus 83.3 1.5 3.3E-05 28.7 2.7 62 1-62 189-277 (410)
381 COG1763 MobB Molybdopterin-gua 83.2 0.2 4.4E-06 28.9 -1.0 32 1-32 13-53 (161)
382 KOG0780|consensus 83.0 4.1 8.9E-05 27.3 4.6 50 17-66 182-238 (483)
383 PRK09361 radB DNA repair and r 82.5 2.3 5E-05 25.3 3.2 27 1-27 34-60 (225)
384 KOG2655|consensus 82.1 0.6 1.3E-05 30.5 0.7 13 17-29 77-89 (366)
385 PF12327 FtsZ_C: FtsZ family, 81.9 5.7 0.00012 20.8 5.1 45 35-79 28-72 (95)
386 TIGR00092 GTP-binding protein 81.5 1.4 3E-05 28.9 2.2 35 19-53 67-108 (368)
387 PF08468 MTS_N: Methyltransfer 81.1 5.9 0.00013 22.7 4.4 38 41-82 68-105 (155)
388 COG1162 Predicted GTPases [Gen 81.0 0.86 1.9E-05 29.0 1.1 13 1-13 175-187 (301)
389 PHA02544 44 clamp loader, smal 80.7 3.2 6.9E-05 26.0 3.5 13 1-13 54-66 (316)
390 KOG2052|consensus 80.5 4.4 9.5E-05 27.6 4.1 41 20-60 212-252 (513)
391 PRK04452 acetyl-CoA decarbonyl 80.5 13 0.00028 24.1 7.2 64 17-82 48-131 (319)
392 cd01844 SGNH_hydrolase_like_6 80.2 8.7 0.00019 21.9 5.6 40 42-82 57-100 (177)
393 PTZ00293 thymidine kinase; Pro 79.8 2.6 5.5E-05 25.6 2.8 35 41-82 76-110 (211)
394 PRK04017 hypothetical protein; 79.4 6.6 0.00014 22.1 4.1 26 55-80 3-28 (132)
395 PF10995 DUF2819: Protein of u 79.4 12 0.00025 24.3 5.6 40 42-81 103-142 (316)
396 PF03668 ATP_bind_2: P-loop AT 79.4 9.2 0.0002 24.3 5.1 72 1-79 12-86 (284)
397 KOG3859|consensus 78.7 1.1 2.3E-05 28.8 1.0 27 2-28 54-104 (406)
398 cd02070 corrinoid_protein_B12- 78.7 8 0.00017 22.9 4.6 38 45-82 134-172 (201)
399 PF10087 DUF2325: Uncharacteri 78.7 7.4 0.00016 20.2 5.5 43 33-81 39-81 (97)
400 TIGR00640 acid_CoA_mut_C methy 78.6 9.3 0.0002 21.3 6.0 39 42-82 53-91 (132)
401 PF03599 CdhD: CO dehydrogenas 78.5 8.7 0.00019 25.5 5.0 76 2-83 15-106 (386)
402 TIGR02370 pyl_corrinoid methyl 78.4 7.7 0.00017 23.0 4.5 39 44-82 135-174 (197)
403 PF09547 Spore_IV_A: Stage IV 78.3 0.81 1.8E-05 30.8 0.4 13 1-13 28-40 (492)
404 PF14606 Lipase_GDSL_3: GDSL-l 77.0 7.1 0.00015 23.1 4.0 57 25-82 40-100 (178)
405 PF01656 CbiA: CobQ/CobB/MinD/ 76.9 11 0.00025 21.4 5.6 51 19-72 95-145 (195)
406 COG2874 FlaH Predicted ATPases 76.5 3.3 7.2E-05 25.5 2.5 16 1-16 39-54 (235)
407 COG0523 Putative GTPases (G3E 76.4 0.97 2.1E-05 29.0 0.3 27 1-27 12-38 (323)
408 cd01832 SGNH_hydrolase_like_1 76.4 9.8 0.00021 21.6 4.5 39 41-82 66-112 (185)
409 cd02069 methionine_synthase_B1 76.1 9.5 0.00021 23.0 4.5 39 44-83 139-177 (213)
410 COG5019 CDC3 Septin family pro 75.2 1.6 3.6E-05 28.6 1.1 13 17-29 80-92 (373)
411 PF09827 CRISPR_Cas2: CRISPR a 75.0 4.9 0.00011 20.0 2.6 20 45-64 3-22 (78)
412 PRK00411 cdc6 cell division co 75.0 7.2 0.00016 25.2 4.0 13 1-13 66-78 (394)
413 COG1341 Predicted GTPase or GT 74.6 0.73 1.6E-05 30.4 -0.6 32 1-32 84-116 (398)
414 PRK14719 bifunctional RNAse/5- 74.3 7.7 0.00017 25.4 4.0 30 53-82 2-31 (360)
415 cd07379 MPP_239FB Homo sapiens 73.9 12 0.00027 20.3 4.9 56 22-83 4-59 (135)
416 PRK13185 chlL protochlorophyll 73.5 18 0.0004 22.1 5.6 60 17-78 116-176 (270)
417 PRK08727 hypothetical protein; 72.4 3.2 7E-05 25.1 1.9 11 1-11 52-62 (233)
418 PF02310 B12-binding: B12 bind 72.4 12 0.00027 19.7 4.5 59 19-82 29-88 (121)
419 COG5400 Uncharacterized protei 71.2 5.3 0.00012 23.5 2.4 16 42-57 131-146 (205)
420 PF01935 DUF87: Domain of unkn 70.9 0.58 1.3E-05 27.9 -1.6 28 1-28 34-62 (229)
421 TIGR03596 GTPase_YlqF ribosome 70.9 5.2 0.00011 24.9 2.6 16 39-54 18-33 (276)
422 PRK15478 cbiH cobalt-precorrin 70.5 19 0.0004 22.1 4.9 44 40-83 149-192 (241)
423 PF13555 AAA_29: P-loop contai 70.4 0.93 2E-05 22.0 -0.6 10 1-10 34-43 (62)
424 KOG1547|consensus 70.4 1.9 4.2E-05 27.1 0.6 13 17-29 102-114 (336)
425 PF12989 DUF3873: Domain of un 70.3 11 0.00025 18.7 3.1 46 21-66 9-55 (69)
426 PF05621 TniB: Bacterial TniB 70.1 2.4 5.3E-05 27.1 1.0 16 1-16 72-87 (302)
427 PRK06756 flavodoxin; Provision 69.9 14 0.0003 20.6 4.0 45 39-83 46-91 (148)
428 KOG3022|consensus 69.9 9.7 0.00021 24.4 3.5 72 3-79 141-214 (300)
429 TIGR00381 cdhD CO dehydrogenas 69.5 31 0.00067 23.1 7.6 74 7-82 101-195 (389)
430 PRK11537 putative GTP-binding 69.0 0.83 1.8E-05 29.2 -1.2 26 1-26 15-40 (318)
431 PF13207 AAA_17: AAA domain; P 69.0 0.62 1.4E-05 24.8 -1.6 13 1-13 10-22 (121)
432 cd01128 rho_factor Transcripti 68.9 8.5 0.00018 23.8 3.2 15 1-15 27-41 (249)
433 TIGR03371 cellulose_yhjQ cellu 68.7 22 0.00049 21.2 6.2 41 20-63 116-156 (246)
434 CHL00175 minD septum-site dete 68.3 26 0.00055 21.7 5.6 51 18-71 126-176 (281)
435 PRK08084 DNA replication initi 68.2 3.6 7.8E-05 25.0 1.4 12 1-12 56-67 (235)
436 PRK13849 putative crown gall t 68.0 25 0.00054 21.4 5.5 62 17-81 82-146 (231)
437 COG0802 Predicted ATPase or ki 67.9 4.8 0.0001 23.1 1.8 13 1-13 36-48 (149)
438 PLN03025 replication factor C 67.9 13 0.00029 23.5 4.0 34 1-34 45-83 (319)
439 cd02036 MinD Bacterial cell di 67.7 20 0.00043 20.2 6.5 48 20-70 64-111 (179)
440 PF12098 DUF3574: Protein of u 67.1 18 0.00039 19.5 5.3 49 21-70 38-86 (104)
441 PF05879 RHD3: Root hair defec 66.8 1.3 2.8E-05 31.6 -0.8 51 1-57 6-60 (742)
442 cd08166 MPP_Cdc1_like_1 unchar 66.7 7.7 0.00017 23.2 2.6 43 41-83 41-89 (195)
443 TIGR03878 thermo_KaiC_2 KaiC d 66.5 5.1 0.00011 24.7 1.9 13 1-13 47-59 (259)
444 PF10412 TrwB_AAD_bind: Type I 66.4 1.3 2.9E-05 28.9 -0.7 38 1-43 26-63 (386)
445 PF06490 FleQ: Flagellar regul 66.3 18 0.0004 19.3 4.8 23 60-83 55-77 (109)
446 TIGR02475 CobW cobalamin biosy 66.2 1.8 3.8E-05 28.0 -0.2 27 1-27 15-41 (341)
447 COG4639 Predicted kinase [Gene 66.0 7.5 0.00016 22.8 2.3 12 1-12 13-24 (168)
448 PRK04301 radA DNA repair and r 65.9 26 0.00056 22.3 5.0 28 1-28 113-146 (317)
449 PRK13660 hypothetical protein; 65.4 26 0.00057 20.8 5.1 21 37-57 124-144 (182)
450 TIGR03815 CpaE_hom_Actino heli 65.2 33 0.00071 21.8 5.8 53 17-72 203-255 (322)
451 PF13238 AAA_18: AAA domain; P 64.8 0.85 1.8E-05 24.2 -1.6 13 1-13 9-21 (129)
452 PF13521 AAA_28: AAA domain; P 64.8 0.71 1.5E-05 26.1 -2.0 13 1-13 10-22 (163)
453 cd05295 MDH_like Malate dehydr 64.6 30 0.00065 23.6 5.2 46 38-83 195-251 (452)
454 KOG3220|consensus 64.2 0.96 2.1E-05 27.5 -1.5 35 1-41 12-55 (225)
455 PF12846 AAA_10: AAA-like doma 64.1 0.93 2E-05 27.7 -1.7 29 1-29 12-40 (304)
456 PRK10818 cell division inhibit 64.0 31 0.00067 21.1 5.1 49 18-69 113-161 (270)
457 cd01338 MDH_choloroplast_like 63.7 29 0.00062 22.4 4.9 46 38-83 74-129 (322)
458 PF13671 AAA_33: AAA domain; P 63.5 1.1 2.3E-05 24.5 -1.4 12 1-12 10-21 (143)
459 TIGR01757 Malate-DH_plant mala 63.5 27 0.00058 23.3 4.8 46 38-83 116-171 (387)
460 TIGR01968 minD_bact septum sit 63.4 30 0.00065 20.8 5.1 52 17-71 110-161 (261)
461 PF03205 MobB: Molybdopterin g 63.2 0.97 2.1E-05 25.3 -1.6 13 1-13 11-23 (140)
462 KOG1487|consensus 63.0 8.9 0.00019 24.6 2.4 61 1-61 70-155 (358)
463 PRK01889 GTPase RsgA; Reviewed 62.7 25 0.00054 22.9 4.5 41 40-83 110-150 (356)
464 PF07693 KAP_NTPase: KAP famil 62.6 1.7 3.8E-05 27.1 -0.7 30 1-30 31-66 (325)
465 PF13124 DUF3963: Protein of u 62.5 9.7 0.00021 16.4 1.8 14 56-69 11-24 (40)
466 cd01611 GABARAP Ubiquitin doma 62.4 18 0.00038 19.7 3.3 26 55-80 4-29 (112)
467 PF09005 DUF1897: Domain of un 62.3 3.3 7.2E-05 18.1 0.4 16 27-42 6-21 (38)
468 cd07393 MPP_DR1119 Deinococcus 62.2 29 0.00063 20.9 4.6 41 41-83 40-80 (232)
469 TIGR01753 flav_short flavodoxi 62.1 22 0.00047 19.2 3.8 44 39-82 42-87 (140)
470 PRK06893 DNA replication initi 61.6 4.4 9.5E-05 24.5 0.9 12 1-12 50-61 (229)
471 PHA02763 hypothetical protein; 61.5 12 0.00027 19.5 2.4 17 56-72 65-81 (102)
472 PRK00440 rfc replication facto 61.4 18 0.0004 22.5 3.7 13 1-13 49-61 (319)
473 TIGR00174 miaA tRNA isopenteny 61.3 33 0.00072 21.8 4.8 14 1-14 10-23 (287)
474 PRK08903 DnaA regulatory inact 61.2 11 0.00024 22.5 2.6 26 1-26 53-78 (227)
475 cd03112 CobW_like The function 61.0 2.6 5.7E-05 23.9 -0.1 14 1-14 11-24 (158)
476 PRK05642 DNA replication initi 60.8 9.4 0.0002 23.2 2.3 10 1-10 56-65 (234)
477 cd05291 HicDH_like L-2-hydroxy 60.6 37 0.00081 21.5 5.0 44 39-83 65-118 (306)
478 PRK14495 putative molybdopteri 60.4 1.3 2.9E-05 29.8 -1.5 13 1-13 12-24 (452)
479 PF00265 TK: Thymidine kinase; 60.3 2.6 5.7E-05 24.6 -0.2 34 42-82 76-110 (176)
480 PF02263 GBP: Guanylate-bindin 60.0 2.6 5.7E-05 26.1 -0.2 31 1-31 32-86 (260)
481 PF11111 CENP-M: Centromere pr 60.0 28 0.0006 20.7 4.0 29 41-69 63-91 (176)
482 cd02019 NK Nucleoside/nucleoti 59.4 1.2 2.6E-05 21.7 -1.5 13 1-13 10-22 (69)
483 TIGR01756 LDH_protist lactate 59.3 41 0.00088 21.6 5.0 68 16-83 13-111 (313)
484 TIGR03369 cellulose_bcsE cellu 59.2 47 0.001 21.7 5.8 41 41-81 107-147 (322)
485 PLN03187 meiotic recombination 58.9 34 0.00075 22.3 4.6 36 1-36 137-181 (344)
486 cd02117 NifH_like This family 58.4 36 0.00079 20.1 5.9 53 17-70 115-168 (212)
487 PRK05569 flavodoxin; Provision 58.0 26 0.00057 19.1 3.6 44 39-82 45-90 (141)
488 PLN02840 tRNA dimethylallyltra 57.9 4.7 0.0001 27.0 0.7 14 1-14 32-45 (421)
489 PRK04132 replication factor C 57.8 24 0.00051 26.0 4.1 81 2-83 578-668 (846)
490 PRK10751 molybdopterin-guanine 57.7 1.4 3.1E-05 25.7 -1.5 11 1-11 17-27 (173)
491 cd01339 LDH-like_MDH L-lactate 57.6 46 0.00099 21.0 5.7 43 40-83 64-116 (300)
492 TIGR01771 L-LDH-NAD L-lactate 57.4 37 0.00079 21.6 4.5 45 38-83 60-114 (299)
493 PRK08233 hypothetical protein; 57.3 1.7 3.7E-05 24.7 -1.3 13 1-13 14-26 (182)
494 PTZ00380 microtubule-associate 57.2 24 0.00053 19.6 3.3 26 55-80 7-32 (121)
495 cd02032 Bchl_like This family 56.7 44 0.00095 20.5 5.6 51 17-69 114-164 (267)
496 PTZ00035 Rad51 protein; Provis 56.7 8 0.00017 25.0 1.6 28 1-28 129-162 (337)
497 PF00532 Peripla_BP_1: Peripla 56.6 45 0.00099 20.7 5.1 57 17-83 30-87 (279)
498 PTZ00202 tuzin; Provisional 56.3 37 0.00079 23.7 4.5 28 1-31 297-324 (550)
499 TIGR01303 IMP_DH_rel_1 IMP deh 56.3 38 0.00083 23.2 4.7 37 42-83 237-273 (475)
500 cd02023 UMPK Uridine monophosp 56.1 1.9 4E-05 25.2 -1.3 12 1-12 10-21 (198)
No 1
>KOG0084|consensus
Probab=100.00 E-value=5.2e-36 Score=172.53 Aligned_cols=83 Identities=51% Similarity=0.874 Sum_probs=81.0
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+|||||+.||..+.|. +.++||||||+|||||+++..+|||+|||+|+|||+|+++||++
T Consensus 20 VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~ 99 (205)
T KOG0084|consen 20 VGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQESFNN 99 (205)
T ss_pred cChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhh
Confidence 5999999999999998 88999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
+..|+++++++..+++|++||||
T Consensus 100 v~~Wi~Ei~~~~~~~v~~lLVGN 122 (205)
T KOG0084|consen 100 VKRWIQEIDRYASENVPKLLVGN 122 (205)
T ss_pred HHHHHHHhhhhccCCCCeEEEee
Confidence 99999999999989999999998
No 2
>KOG0092|consensus
Probab=100.00 E-value=1.1e-33 Score=162.46 Aligned_cols=83 Identities=39% Similarity=0.757 Sum_probs=80.4
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+|||||+.||+.+.|. ..+++.||||+|||||.++.+.|||+|+++|+|||+++.+||..
T Consensus 16 VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~~SF~~ 95 (200)
T KOG0092|consen 16 VGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEESFEK 95 (200)
T ss_pred CCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEEEEecccHHHHHH
Confidence 5999999999999998 56999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
++.|+++++++.++++.|.||||
T Consensus 96 aK~WvkeL~~~~~~~~vialvGN 118 (200)
T KOG0092|consen 96 AKNWVKELQRQASPNIVIALVGN 118 (200)
T ss_pred HHHHHHHHHhhCCCCeEEEEecc
Confidence 99999999999989999999998
No 3
>KOG0094|consensus
Probab=99.98 E-value=1.4e-32 Score=158.45 Aligned_cols=83 Identities=33% Similarity=0.625 Sum_probs=79.2
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+|||||+.||..+.|. ..+.||+|||+|||||+.+.+.|+|++.++|+|||+++++||++
T Consensus 33 VGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~ 112 (221)
T KOG0094|consen 33 VGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFEN 112 (221)
T ss_pred cchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccccchHHH
Confidence 5999999999999998 78999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCC-CceEEEEeC
Q psy16649 61 IKNWIRNIEENASA-NVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~-~~piilvgN 83 (83)
.++|++++++..++ ++.|+||||
T Consensus 113 t~kWi~dv~~e~gs~~viI~LVGn 136 (221)
T KOG0094|consen 113 TSKWIEDVRRERGSDDVIIFLVGN 136 (221)
T ss_pred HHHHHHHHHhccCCCceEEEEEcc
Confidence 99999999987765 599999998
No 4
>KOG0078|consensus
Probab=99.97 E-value=3.2e-32 Score=158.26 Aligned_cols=83 Identities=61% Similarity=0.994 Sum_probs=81.0
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+||||++.+|..+.|. ..++||+|||+|||+|+++...||++|+++++|||++++.||++
T Consensus 23 vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfen 102 (207)
T KOG0078|consen 23 VGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFEN 102 (207)
T ss_pred CchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHH
Confidence 6999999999999998 78999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
+..|++.++++.++++|++||||
T Consensus 103 i~~W~~~I~e~a~~~v~~~LvGN 125 (207)
T KOG0078|consen 103 IRNWIKNIDEHASDDVVKILVGN 125 (207)
T ss_pred HHHHHHHHHhhCCCCCcEEEeec
Confidence 99999999999988999999998
No 5
>KOG0098|consensus
Probab=99.97 E-value=8.9e-32 Score=154.28 Aligned_cols=83 Identities=40% Similarity=0.758 Sum_probs=80.7
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+|||||+.||..+.|+ ++++|+||||+|||+|++++..||++|.++|||||+++++||+.
T Consensus 17 VGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~sF~h 96 (216)
T KOG0098|consen 17 VGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRESFNH 96 (216)
T ss_pred ccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccchhhHHH
Confidence 5999999999999998 88999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
|..|+.+++++..+++.++|+||
T Consensus 97 L~~wL~D~rq~~~~NmvImLiGN 119 (216)
T KOG0098|consen 97 LTSWLEDARQHSNENMVIMLIGN 119 (216)
T ss_pred HHHHHHHHHHhcCCCcEEEEEcc
Confidence 99999999999879999999998
No 6
>KOG0086|consensus
Probab=99.97 E-value=2.2e-31 Score=149.30 Aligned_cols=83 Identities=42% Similarity=0.753 Sum_probs=80.5
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+||||++.+|..+.|. +.++||||||+|||+|++....||++|.+.++|||+++++||+.
T Consensus 20 tGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~Tsrdsfna 99 (214)
T KOG0086|consen 20 TGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRDSFNA 99 (214)
T ss_pred CChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEEEeccchhhHHH
Confidence 6999999999999987 88999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
+..|+.+++...++++.++|+||
T Consensus 100 LtnWL~DaR~lAs~nIvviL~Gn 122 (214)
T KOG0086|consen 100 LTNWLTDARTLASPNIVVILCGN 122 (214)
T ss_pred HHHHHHHHHhhCCCcEEEEEeCC
Confidence 99999999999999999999998
No 7
>KOG0087|consensus
Probab=99.97 E-value=2.6e-31 Score=154.52 Aligned_cols=83 Identities=42% Similarity=0.801 Sum_probs=80.6
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
.|||-|+.||..+.|. +.++.|||||+|||||+.+.+.||++|.|+++|||++++.||++
T Consensus 25 VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~~Tfen 104 (222)
T KOG0087|consen 25 VGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRRQTFEN 104 (222)
T ss_pred cchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeEEEEechhHHHHHH
Confidence 5999999999999998 78999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
+.+|+++++.+.+++++++||||
T Consensus 105 v~rWL~ELRdhad~nivimLvGN 127 (222)
T KOG0087|consen 105 VERWLKELRDHADSNIVIMLVGN 127 (222)
T ss_pred HHHHHHHHHhcCCCCeEEEEeec
Confidence 99999999999989999999998
No 8
>KOG0079|consensus
Probab=99.97 E-value=2.8e-31 Score=148.00 Aligned_cols=82 Identities=45% Similarity=0.838 Sum_probs=79.1
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
.|||+|+.+|..+.|. ..++|+||||+|||+|+.+...||++.+++++|||+++.+||.+
T Consensus 19 VGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn~ESF~N 98 (198)
T KOG0079|consen 19 VGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFNN 98 (198)
T ss_pred ccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEEECcchhhhHh
Confidence 5999999999999887 78999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
+++|+++++.++ +.+|.+||||
T Consensus 99 v~rWLeei~~nc-dsv~~vLVGN 120 (198)
T KOG0079|consen 99 VKRWLEEIRNNC-DSVPKVLVGN 120 (198)
T ss_pred HHHHHHHHHhcC-ccccceeccc
Confidence 999999999988 6999999998
No 9
>KOG0093|consensus
Probab=99.97 E-value=1.7e-30 Score=144.73 Aligned_cols=83 Identities=46% Similarity=0.817 Sum_probs=80.1
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+||||++.++....|. +.++||||||+|||+|+.+...||++|+++|+|||++|++||.+
T Consensus 32 vGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLmyDitNeeSf~s 111 (193)
T KOG0093|consen 32 VGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNS 111 (193)
T ss_pred ccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEEEecCCHHHHHH
Confidence 6999999999999887 78999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
++.|..+++..+-.++|++||||
T Consensus 112 vqdw~tqIktysw~naqvilvgn 134 (193)
T KOG0093|consen 112 VQDWITQIKTYSWDNAQVILVGN 134 (193)
T ss_pred HHHHHHHheeeeccCceEEEEec
Confidence 99999999999888999999998
No 10
>KOG0080|consensus
Probab=99.97 E-value=6.1e-31 Score=148.24 Aligned_cols=83 Identities=40% Similarity=0.782 Sum_probs=79.0
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+|||||+.+|..+.|. ..++|.||||+|||+|+.+.++||++|.++|+|||++++++|.+
T Consensus 22 VGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~k 101 (209)
T KOG0080|consen 22 VGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDTFVK 101 (209)
T ss_pred ccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEEEEEccchhhHHh
Confidence 5999999999999998 77899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc-CCCceEEEEeC
Q psy16649 61 IKNWIRNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~-~~~~piilvgN 83 (83)
+..|++++..++ .+++..++|||
T Consensus 102 Ld~W~~Eld~Ystn~diikmlVgN 125 (209)
T KOG0080|consen 102 LDIWLKELDLYSTNPDIIKMLVGN 125 (209)
T ss_pred HHHHHHHHHhhcCCccHhHhhhcc
Confidence 999999999987 47899999998
No 11
>KOG0095|consensus
Probab=99.97 E-value=2.9e-30 Score=144.40 Aligned_cols=83 Identities=43% Similarity=0.771 Sum_probs=80.6
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
.||||+..+|.++-|+ +.++||||||+|||+|+++..+||+.|+++|++||++.+.||+.
T Consensus 18 vgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilvydiscqpsfdc 97 (213)
T KOG0095|consen 18 VGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPSFDC 97 (213)
T ss_pred cCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEecccCcchhh
Confidence 5999999999999998 78999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
+.+|+.++.++....+..+||||
T Consensus 98 lpewlreie~yan~kvlkilvgn 120 (213)
T KOG0095|consen 98 LPEWLREIEQYANNKVLKILVGN 120 (213)
T ss_pred hHHHHHHHHHHhhcceEEEeecc
Confidence 99999999999888999999998
No 12
>KOG0083|consensus
Probab=99.96 E-value=8e-30 Score=140.43 Aligned_cols=83 Identities=45% Similarity=0.774 Sum_probs=78.7
Q ss_pred CCcceeeeeeccCccc---------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHH
Q psy16649 1 SGENLCTLQIFRGCFQ---------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFD 59 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~---------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~ 59 (83)
+||||++.||..+-|- +.++||||||+|||+|++....||+.||+.+++||++|+.||+
T Consensus 8 ~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydiankasfd 87 (192)
T KOG0083|consen 8 TGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIANKASFD 87 (192)
T ss_pred cCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecccchhHH
Confidence 5999999999887775 8899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 60 NIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 60 ~~~~w~~~~~~~~~~~~piilvgN 83 (83)
+++.|+.++.++....+.++|+||
T Consensus 88 n~~~wlsei~ey~k~~v~l~llgn 111 (192)
T KOG0083|consen 88 NCQAWLSEIHEYAKEAVALMLLGN 111 (192)
T ss_pred HHHHHHHHHHHHHHhhHhHhhhcc
Confidence 999999999999878899999987
No 13
>KOG0088|consensus
Probab=99.96 E-value=8.3e-30 Score=143.58 Aligned_cols=83 Identities=36% Similarity=0.697 Sum_probs=80.3
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+||||+..||..+.|. ....|.||||+|||+|..+-|.||++++++++|||++|++||+.
T Consensus 24 VGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDrdSFqK 103 (218)
T KOG0088|consen 24 VGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALLVYDITDRDSFQK 103 (218)
T ss_pred cchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceEEEEeccchHHHHH
Confidence 5999999999999998 67899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
++.|..+++...+..+.+++|||
T Consensus 104 VKnWV~Elr~mlGnei~l~IVGN 126 (218)
T KOG0088|consen 104 VKNWVLELRTMLGNEIELLIVGN 126 (218)
T ss_pred HHHHHHHHHHHhCCeeEEEEecC
Confidence 99999999999889999999998
No 14
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.96 E-value=4.1e-29 Score=147.02 Aligned_cols=83 Identities=42% Similarity=0.761 Sum_probs=77.8
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+||||++.+|..+.|. ..+++++|||+|+++|+.+++.|+++++++|+|||+++++||++
T Consensus 11 VGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~ 90 (202)
T cd04120 11 VGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDD 90 (202)
T ss_pred CCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHHH
Confidence 6999999999999885 45889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
++.|++.+++...+++|++||||
T Consensus 91 l~~w~~~i~~~~~~~~piilVgN 113 (202)
T cd04120 91 LPKWMKMIDKYASEDAELLLVGN 113 (202)
T ss_pred HHHHHHHHHHhCCCCCcEEEEEE
Confidence 99999999877667899999998
No 15
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.96 E-value=1.3e-28 Score=142.35 Aligned_cols=82 Identities=27% Similarity=0.528 Sum_probs=76.9
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 61 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~ 61 (83)
+|||||+.+|..+.|. ..++++||||+|+++|+.+++.|+++++++|+|||+++++||+++
T Consensus 12 vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~ 91 (176)
T cd04133 12 VGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENV 91 (176)
T ss_pred CcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEEcCCHHHHHHH
Confidence 6999999999999886 569999999999999999999999999999999999999999998
Q ss_pred -HHHHHHHHHhcCCCceEEEEeC
Q psy16649 62 -KNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 62 -~~w~~~~~~~~~~~~piilvgN 83 (83)
+.|++++++.. +++|++||||
T Consensus 92 ~~~w~~~i~~~~-~~~piilvgn 113 (176)
T cd04133 92 LKKWVPELRHYA-PNVPIVLVGT 113 (176)
T ss_pred HHHHHHHHHHhC-CCCCEEEEEe
Confidence 68999998776 5899999998
No 16
>KOG0394|consensus
Probab=99.95 E-value=5.5e-29 Score=142.57 Aligned_cols=83 Identities=39% Similarity=0.631 Sum_probs=77.6
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
.|||||..||+.+.|. +.+.||||||+|||||+++.-.+||+||+++++||+++++||++
T Consensus 20 VGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~ 99 (210)
T KOG0394|consen 20 VGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNPKSFEN 99 (210)
T ss_pred ccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEEEEeecCChhhhcc
Confidence 5999999999999887 78999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcC----CCceEEEEeC
Q psy16649 61 IKNWIRNIEENAS----ANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~----~~~piilvgN 83 (83)
+..|.+++..+.+ ...|.||+||
T Consensus 100 L~~Wr~EFl~qa~~~~Pe~FPFVilGN 126 (210)
T KOG0394|consen 100 LENWRKEFLIQASPQDPETFPFVILGN 126 (210)
T ss_pred HHHHHHHHHHhcCCCCCCcccEEEEcc
Confidence 9999999977653 5699999998
No 17
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.95 E-value=2.4e-28 Score=141.83 Aligned_cols=82 Identities=21% Similarity=0.515 Sum_probs=76.7
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 61 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~ 61 (83)
+|||||+.+|..+.|. +.++++||||+|+++|..+++.|+++++++|+|||+++++||+++
T Consensus 16 vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~ 95 (182)
T cd04172 16 CGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSV 95 (182)
T ss_pred CCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHHHHHHH
Confidence 6999999999998875 568899999999999999999999999999999999999999997
Q ss_pred -HHHHHHHHHhcCCCceEEEEeC
Q psy16649 62 -KNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 62 -~~w~~~~~~~~~~~~piilvgN 83 (83)
..|++++++.. +++|++||||
T Consensus 96 ~~~w~~~i~~~~-~~~piilVgN 117 (182)
T cd04172 96 LKKWKGEIQEFC-PNTKMLLVGC 117 (182)
T ss_pred HHHHHHHHHHHC-CCCCEEEEeE
Confidence 79999998876 6899999998
No 18
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.95 E-value=3.4e-28 Score=141.84 Aligned_cols=82 Identities=23% Similarity=0.475 Sum_probs=75.6
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 61 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~ 61 (83)
+|||||+.+|..+.|. ..++++||||+|+++|+.+++.|++++|++|+|||+++++||+++
T Consensus 14 vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~ 93 (191)
T cd01875 14 VGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENV 93 (191)
T ss_pred CCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHHHHHHH
Confidence 7999999999999885 457899999999999999999999999999999999999999999
Q ss_pred H-HHHHHHHHhcCCCceEEEEeC
Q psy16649 62 K-NWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 62 ~-~w~~~~~~~~~~~~piilvgN 83 (83)
+ .|.+++++.. +++|++||||
T Consensus 94 ~~~w~~~i~~~~-~~~piilvgN 115 (191)
T cd01875 94 RHKWHPEVCHHC-PNVPILLVGT 115 (191)
T ss_pred HHHHHHHHHhhC-CCCCEEEEEe
Confidence 7 6999887765 6899999998
No 19
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.95 E-value=4.6e-28 Score=141.34 Aligned_cols=82 Identities=45% Similarity=0.737 Sum_probs=76.4
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+||||++.+|..+.|. ..++|++|||+|+++|+.+++.|+++++++|+|||+++++||++
T Consensus 17 vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~ 96 (189)
T cd04121 17 VGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDG 96 (189)
T ss_pred CCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHH
Confidence 6999999999988764 45899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
++.|++++.+.. +++|++||||
T Consensus 97 ~~~w~~~i~~~~-~~~piilVGN 118 (189)
T cd04121 97 IDRWIKEIDEHA-PGVPKILVGN 118 (189)
T ss_pred HHHHHHHHHHhC-CCCCEEEEEE
Confidence 999999998776 6899999998
No 20
>KOG0081|consensus
Probab=99.95 E-value=7.4e-28 Score=135.80 Aligned_cols=83 Identities=42% Similarity=0.790 Sum_probs=78.4
Q ss_pred CCcceeeeeeccCccc-----------------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEE
Q psy16649 1 SGENLCTLQIFRGCFQ-----------------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYD 51 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-----------------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d 51 (83)
+||||+++||..+.|. +.+.||+|||+|||+|+++...+|+.|-+++++||
T Consensus 20 VGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFD 99 (219)
T KOG0081|consen 20 VGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFD 99 (219)
T ss_pred CCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHHhhccceEEEe
Confidence 5999999999999998 78999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHhc-CCCceEEEEeC
Q psy16649 52 ITNEKSFDNIKNWIRNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 52 ~~~~~s~~~~~~w~~~~~~~~-~~~~piilvgN 83 (83)
+++++||-++++|+.+++.+. ..++-|+|+||
T Consensus 100 lT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGN 132 (219)
T KOG0081|consen 100 LTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGN 132 (219)
T ss_pred ccchHHHHHHHHHHHHHHHhhccCCCCEEEEcC
Confidence 999999999999999998865 47888999998
No 21
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.95 E-value=8.1e-28 Score=139.11 Aligned_cols=82 Identities=20% Similarity=0.512 Sum_probs=76.3
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 61 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~ 61 (83)
+|||||+.+|..+.|+ ..+++++|||+|+++|..+++.++++++++|+|||+++++||+++
T Consensus 12 vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~ 91 (178)
T cd04131 12 CGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPETLDSV 91 (178)
T ss_pred CCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCChhhHHHH
Confidence 6999999999998875 568899999999999999999999999999999999999999996
Q ss_pred -HHHHHHHHHhcCCCceEEEEeC
Q psy16649 62 -KNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 62 -~~w~~~~~~~~~~~~piilvgN 83 (83)
+.|++++++.. +++|++||||
T Consensus 92 ~~~w~~~i~~~~-~~~~iilVgn 113 (178)
T cd04131 92 LKKWRGEIQEFC-PNTKVLLVGC 113 (178)
T ss_pred HHHHHHHHHHHC-CCCCEEEEEE
Confidence 79999998876 6899999998
No 22
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.95 E-value=1.8e-27 Score=140.03 Aligned_cols=83 Identities=23% Similarity=0.452 Sum_probs=74.8
Q ss_pred CCcceeeeeeccCccc-------------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCCh
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNE 55 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 55 (83)
+|||||+.++..+.|. +.+.++||||+|+++|..+++.||++++++|+|||++++
T Consensus 11 VGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~ 90 (202)
T cd04102 11 VGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNR 90 (202)
T ss_pred CCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcCh
Confidence 6999999999888764 246799999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhc-------------------CCCceEEEEeC
Q psy16649 56 KSFDNIKNWIRNIEENA-------------------SANVEKMLLGN 83 (83)
Q Consensus 56 ~s~~~~~~w~~~~~~~~-------------------~~~~piilvgN 83 (83)
+||++++.|++++.+.. ++++|++||||
T Consensus 91 ~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGn 137 (202)
T cd04102 91 KSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGT 137 (202)
T ss_pred HHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEE
Confidence 99999999999997642 35799999998
No 23
>KOG0393|consensus
Probab=99.94 E-value=4.4e-27 Score=136.90 Aligned_cols=82 Identities=26% Similarity=0.512 Sum_probs=78.0
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+|||+++..|..+.|+ +.++|.+|||+|||.|..+++..|.++|.|++||++.+++||++
T Consensus 15 ~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S~~n 94 (198)
T KOG0393|consen 15 VGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPESFEN 94 (198)
T ss_pred cCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEEEEEcCChhhHHH
Confidence 7999999999999998 56889999999999999999999999999999999999999999
Q ss_pred HH-HHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IK-NWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~-~w~~~~~~~~~~~~piilvgN 83 (83)
+. +|++++++++ +++|++|||+
T Consensus 95 v~~kW~pEi~~~c-p~vpiiLVGt 117 (198)
T KOG0393|consen 95 VKSKWIPEIKHHC-PNVPIILVGT 117 (198)
T ss_pred HHhhhhHHHHhhC-CCCCEEEEee
Confidence 86 8999999999 8999999995
No 24
>KOG0091|consensus
Probab=99.94 E-value=2.3e-27 Score=134.13 Aligned_cols=83 Identities=39% Similarity=0.727 Sum_probs=75.8
Q ss_pred CCcceeeeeeccCccc---------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHH
Q psy16649 1 SGENLCTLQIFRGCFQ---------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFD 59 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~---------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~ 59 (83)
+|||||+..|..+.|. ..++||+|||+|||+|++++.+||+++-++++|||++|++||+
T Consensus 19 vgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvllvyditnr~sfe 98 (213)
T KOG0091|consen 19 VGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITNRESFE 98 (213)
T ss_pred ccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceEEEEeccchhhHH
Confidence 5999999999999997 7899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcC--CCceEEEEeC
Q psy16649 60 NIKNWIRNIEENAS--ANVEKMLLGN 83 (83)
Q Consensus 60 ~~~~w~~~~~~~~~--~~~piilvgN 83 (83)
.++.|+++...+.+ ..+...|||.
T Consensus 99 hv~~w~~ea~m~~q~P~k~VFlLVGh 124 (213)
T KOG0091|consen 99 HVENWVKEAAMATQGPDKVVFLLVGH 124 (213)
T ss_pred HHHHHHHHHHHhcCCCCeeEEEEecc
Confidence 99999999987653 4566667774
No 25
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.94 E-value=4.1e-27 Score=138.37 Aligned_cols=82 Identities=28% Similarity=0.560 Sum_probs=76.8
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+|||||+.++..+.|. ..++++||||+|+++|+.+++.||++++++|+|||+++++||++
T Consensus 6 vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~ 85 (200)
T smart00176 6 TGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKN 85 (200)
T ss_pred CCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCChHHHHH
Confidence 7999999999988775 46899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
++.|++++++.. +++|++||||
T Consensus 86 i~~w~~~i~~~~-~~~piilvgN 107 (200)
T smart00176 86 VPNWHRDLVRVC-ENIPIVLCGN 107 (200)
T ss_pred HHHHHHHHHHhC-CCCCEEEEEE
Confidence 999999998876 6899999998
No 26
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.94 E-value=3.9e-27 Score=141.04 Aligned_cols=82 Identities=18% Similarity=0.481 Sum_probs=75.9
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 61 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~ 61 (83)
+|||||+.+|..+.|. ..++|+||||+|+++|..+++.||++|+++++|||+++++||+++
T Consensus 24 VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~ 103 (232)
T cd04174 24 CGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSA 103 (232)
T ss_pred CcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChHHHHHH
Confidence 6999999999988775 568999999999999999999999999999999999999999985
Q ss_pred -HHHHHHHHHhcCCCceEEEEeC
Q psy16649 62 -KNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 62 -~~w~~~~~~~~~~~~piilvgN 83 (83)
..|++++++.. +++|++||||
T Consensus 104 ~~~w~~~i~~~~-~~~piilVgN 125 (232)
T cd04174 104 LKKWKAEIMDYC-PSTRILLIGC 125 (232)
T ss_pred HHHHHHHHHHhC-CCCCEEEEEE
Confidence 89999998876 6799999998
No 27
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.94 E-value=9e-27 Score=134.28 Aligned_cols=82 Identities=21% Similarity=0.457 Sum_probs=75.4
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 61 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~ 61 (83)
+|||||+.++..+.|. ..++++||||+|+++|..+++.++++++++|+|||+++++||+++
T Consensus 12 vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~ 91 (175)
T cd01874 12 VGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENV 91 (175)
T ss_pred CCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEECCCHHHHHHH
Confidence 7999999999998884 458899999999999999999999999999999999999999999
Q ss_pred H-HHHHHHHHhcCCCceEEEEeC
Q psy16649 62 K-NWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 62 ~-~w~~~~~~~~~~~~piilvgN 83 (83)
. .|++++++.. +++|++||||
T Consensus 92 ~~~w~~~i~~~~-~~~piilvgn 113 (175)
T cd01874 92 KEKWVPEITHHC-PKTPFLLVGT 113 (175)
T ss_pred HHHHHHHHHHhC-CCCCEEEEEE
Confidence 7 6999998765 6799999998
No 28
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.94 E-value=2.6e-26 Score=136.75 Aligned_cols=82 Identities=18% Similarity=0.451 Sum_probs=75.2
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 61 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~ 61 (83)
+|||||+.+|..+.|+ +.++|+||||+|++.|..+++.+|+++|++|+|||+++++||+++
T Consensus 12 vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i 91 (222)
T cd04173 12 CGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSV 91 (222)
T ss_pred CCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHH
Confidence 7999999999988876 568999999999999999999999999999999999999999999
Q ss_pred -HHHHHHHHHhcCCCceEEEEeC
Q psy16649 62 -KNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 62 -~~w~~~~~~~~~~~~piilvgN 83 (83)
..|.++++... +++|++||||
T Consensus 92 ~~~w~~~~~~~~-~~~piiLVgn 113 (222)
T cd04173 92 LKKWQGETQEFC-PNAKVVLVGC 113 (222)
T ss_pred HHHHHHHHHhhC-CCCCEEEEEE
Confidence 57888876665 7899999998
No 29
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.93 E-value=5.7e-26 Score=130.83 Aligned_cols=82 Identities=20% Similarity=0.461 Sum_probs=74.9
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 61 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~ 61 (83)
+|||||+.++..+.|. ..++|+||||+|+++|..+++.+++++|++|+|||+++++||+++
T Consensus 12 vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~ 91 (174)
T cd01871 12 VGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENV 91 (174)
T ss_pred CCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHHHHHHH
Confidence 7999999998888775 558899999999999999999999999999999999999999999
Q ss_pred H-HHHHHHHHhcCCCceEEEEeC
Q psy16649 62 K-NWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 62 ~-~w~~~~~~~~~~~~piilvgN 83 (83)
. .|++.+.... +++|++||||
T Consensus 92 ~~~~~~~~~~~~-~~~piilvgn 113 (174)
T cd01871 92 RAKWYPEVRHHC-PNTPIILVGT 113 (174)
T ss_pred HHHHHHHHHHhC-CCCCEEEEee
Confidence 6 6999887765 6899999998
No 30
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.93 E-value=7.8e-26 Score=128.87 Aligned_cols=83 Identities=35% Similarity=0.684 Sum_probs=76.3
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+||||++.++..+.|. ..+++++|||+|+++++.++..++++++++++|||+++++||+.
T Consensus 13 vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 92 (166)
T cd04122 13 VGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNH 92 (166)
T ss_pred CCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHH
Confidence 7999999999887664 46789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
+..|++++.....++.|+++|||
T Consensus 93 ~~~~~~~~~~~~~~~~~iiiv~n 115 (166)
T cd04122 93 LSSWLTDARNLTNPNTVIFLIGN 115 (166)
T ss_pred HHHHHHHHHHhCCCCCeEEEEEE
Confidence 99999999877667899999998
No 31
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.93 E-value=6.2e-26 Score=131.60 Aligned_cols=82 Identities=21% Similarity=0.468 Sum_probs=74.5
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+|||||+.+|..+.|. ..+.|+||||+|+++|..+++.++++++++++|||+++++||++
T Consensus 11 vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~ 90 (182)
T cd04128 11 IGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKSTLNS 90 (182)
T ss_pred CCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHHHHH
Confidence 6999999999888775 45789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
+..|++++++..+..+| +||||
T Consensus 91 i~~~~~~~~~~~~~~~p-ilVgn 112 (182)
T cd04128 91 IKEWYRQARGFNKTAIP-ILVGT 112 (182)
T ss_pred HHHHHHHHHHhCCCCCE-EEEEE
Confidence 99999999887656677 57887
No 32
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.93 E-value=1.6e-25 Score=127.34 Aligned_cols=83 Identities=42% Similarity=0.756 Sum_probs=76.4
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+||||++.++..+.|. ..+++++||++|+++|..+++.++++++++++|||+++++||++
T Consensus 11 ~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~ 90 (161)
T cd04117 11 VGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQH 90 (161)
T ss_pred CCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHHHH
Confidence 7999999999888775 35789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
+..|++++.+..+.++|+++|||
T Consensus 91 ~~~~~~~~~~~~~~~~~iilvgn 113 (161)
T cd04117 91 IMKWVSDVDEYAPEGVQKILIGN 113 (161)
T ss_pred HHHHHHHHHHhCCCCCeEEEEEE
Confidence 99999999887656899999997
No 33
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.93 E-value=1.3e-25 Score=133.44 Aligned_cols=82 Identities=26% Similarity=0.528 Sum_probs=76.2
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+||||++.++..+.|. ..+++++|||+|+++|..+++.|+++++++|+|||+++++||++
T Consensus 24 vGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~ 103 (219)
T PLN03071 24 TGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 103 (219)
T ss_pred CCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHHHHHH
Confidence 7999999999888775 45799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
+..|++++++.. +++|++||||
T Consensus 104 i~~w~~~i~~~~-~~~piilvgN 125 (219)
T PLN03071 104 VPTWHRDLCRVC-ENIPIVLCGN 125 (219)
T ss_pred HHHHHHHHHHhC-CCCcEEEEEE
Confidence 999999998776 6899999998
No 34
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.92 E-value=1.6e-25 Score=126.78 Aligned_cols=83 Identities=30% Similarity=0.689 Sum_probs=78.6
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+||||++.++..+.|+ ..+.+++||++|+++|..+++.++++++++|+|||+++++||++
T Consensus 10 vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~ 89 (162)
T PF00071_consen 10 VGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDEESFEN 89 (162)
T ss_dssp SSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHT
T ss_pred CCHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 7999999999998877 78899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
++.|++++....+.++|++||||
T Consensus 90 ~~~~~~~i~~~~~~~~~iivvg~ 112 (162)
T PF00071_consen 90 LKKWLEEIQKYKPEDIPIIVVGN 112 (162)
T ss_dssp HHHHHHHHHHHSTTTSEEEEEEE
T ss_pred cccccccccccccccccceeeec
Confidence 99999999998866899999997
No 35
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.92 E-value=2.7e-25 Score=127.79 Aligned_cols=83 Identities=25% Similarity=0.494 Sum_probs=75.7
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 61 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~ 61 (83)
+|||||+.++..+.|. ..+.+++|||+|+++|+.+++.++++++++++|||+++++||+.+
T Consensus 13 vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~ 92 (172)
T cd04141 13 VGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEA 92 (172)
T ss_pred CcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHH
Confidence 6999999999888875 457899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc-CCCceEEEEeC
Q psy16649 62 KNWIRNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 62 ~~w~~~~~~~~-~~~~piilvgN 83 (83)
..|.+.+.+.. .+++|+++|||
T Consensus 93 ~~~~~~i~~~~~~~~~piilvgN 115 (172)
T cd04141 93 SEFKKLITRVRLTEDIPLVLVGN 115 (172)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEE
Confidence 99998887753 36899999998
No 36
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.92 E-value=2.8e-25 Score=132.20 Aligned_cols=83 Identities=25% Similarity=0.515 Sum_probs=76.2
Q ss_pred CCcceeeeeeccCccc---------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ---------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWI 65 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~---------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~ 65 (83)
+|||||+.++..+.|. ..+.+.||||+|+++|..+++.|+++++++|+|||+++++||+++..|+
T Consensus 11 vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~ 90 (220)
T cd04126 11 VGKTSLLHRYMERRFKDTVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRF 90 (220)
T ss_pred CcHHHHHHHHhcCCCCCCCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHH
Confidence 6999999999999885 3678999999999999999999999999999999999999999999988
Q ss_pred HHHHHhcCCCceEEEEeC
Q psy16649 66 RNIEENASANVEKMLLGN 83 (83)
Q Consensus 66 ~~~~~~~~~~~piilvgN 83 (83)
..+.+...+++|++||||
T Consensus 91 ~~l~~~~~~~~piIlVgN 108 (220)
T cd04126 91 LGLTDTANEDCLFAVVGN 108 (220)
T ss_pred HHHHHhcCCCCcEEEEEE
Confidence 888776557899999998
No 37
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.92 E-value=4.6e-25 Score=126.61 Aligned_cols=83 Identities=31% Similarity=0.653 Sum_probs=75.2
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
||||||+.++..+.|. ..+.+++|||+|+++|..++..+++++|++++|||+++++||+.
T Consensus 11 vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~ 90 (170)
T cd04108 11 VGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEH 90 (170)
T ss_pred CCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHHHHHH
Confidence 7999999999998885 34689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc-CCCceEEEEeC
Q psy16649 61 IKNWIRNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~-~~~~piilvgN 83 (83)
++.|++++.+.. +.++|+++|||
T Consensus 91 ~~~~~~~~~~~~~~~~~~iilVgn 114 (170)
T cd04108 91 TRQWLEDALKENDPSSVLLFLVGT 114 (170)
T ss_pred HHHHHHHHHHhcCCCCCeEEEEEE
Confidence 999999987653 45689999998
No 38
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.92 E-value=3.3e-25 Score=128.96 Aligned_cols=82 Identities=27% Similarity=0.499 Sum_probs=75.0
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 61 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~ 61 (83)
+||||++.++..+.|. ..+.++||||+|+++|..+++.++++++++++|||+++++||+.+
T Consensus 11 vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~ 90 (189)
T cd04134 11 CGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDSLENV 90 (189)
T ss_pred CCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEECCCHHHHHHH
Confidence 7999999999888775 457899999999999999999999999999999999999999999
Q ss_pred H-HHHHHHHHhcCCCceEEEEeC
Q psy16649 62 K-NWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 62 ~-~w~~~~~~~~~~~~piilvgN 83 (83)
. .|++++.... +++|++||||
T Consensus 91 ~~~~~~~i~~~~-~~~piilvgN 112 (189)
T cd04134 91 ESKWLGEIREHC-PGVKLVLVAL 112 (189)
T ss_pred HHHHHHHHHHhC-CCCCEEEEEE
Confidence 7 6999998765 6899999998
No 39
>KOG0097|consensus
Probab=99.92 E-value=1.6e-25 Score=124.69 Aligned_cols=83 Identities=35% Similarity=0.684 Sum_probs=78.7
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+||||++.+|....|. +.++|+||||+|||+|+....+||+++.+.+.|||++.+.+++.
T Consensus 22 vgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalmvyditrrstynh 101 (215)
T KOG0097|consen 22 VGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNH 101 (215)
T ss_pred ccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeEEEEehhhhhhhh
Confidence 5999999999988776 78999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
+..|+.+.+....|+..|+|+||
T Consensus 102 lsswl~dar~ltnpnt~i~lign 124 (215)
T KOG0097|consen 102 LSSWLTDARNLTNPNTVIFLIGN 124 (215)
T ss_pred HHHHHhhhhccCCCceEEEEecc
Confidence 99999999988779999999998
No 40
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.92 E-value=6.2e-25 Score=127.85 Aligned_cols=83 Identities=29% Similarity=0.537 Sum_probs=74.7
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 61 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~ 61 (83)
+|||||+.++..+.|. ..+.+++|||+|+++|..++..|++++|++|+|||+++++||+++
T Consensus 10 vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~ 89 (190)
T cd04144 10 VGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERV 89 (190)
T ss_pred CCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHHHHHHH
Confidence 7999999999887764 347799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc---CCCceEEEEeC
Q psy16649 62 KNWIRNIEENA---SANVEKMLLGN 83 (83)
Q Consensus 62 ~~w~~~~~~~~---~~~~piilvgN 83 (83)
..|++.+.... .+++|+++|||
T Consensus 90 ~~~~~~i~~~~~~~~~~~piilvgN 114 (190)
T cd04144 90 ERFREQIQRVKDESAADVPIMIVGN 114 (190)
T ss_pred HHHHHHHHHHhcccCCCCCEEEEEE
Confidence 99999987654 25799999997
No 41
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.92 E-value=1.1e-24 Score=124.15 Aligned_cols=83 Identities=45% Similarity=0.786 Sum_probs=76.3
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+|||||+.++..+.|. ..+.+++|||+|++++..++..++++++++++|||+++++||++
T Consensus 12 ~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~ 91 (165)
T cd01865 12 VGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNA 91 (165)
T ss_pred CCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEEECCCHHHHHH
Confidence 7999999999888764 34789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
+..|++++.+...+++|+++|||
T Consensus 92 ~~~~~~~i~~~~~~~~piivv~n 114 (165)
T cd01865 92 VQDWSTQIKTYSWDNAQVILVGN 114 (165)
T ss_pred HHHHHHHHHHhCCCCCCEEEEEE
Confidence 99999999887667899999997
No 42
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.92 E-value=8.7e-25 Score=125.08 Aligned_cols=82 Identities=21% Similarity=0.451 Sum_probs=75.1
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 61 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~ 61 (83)
+||||++.++..+.|. ..+.+++|||+|+++|..+++.+++++|++|+|||+++++||+++
T Consensus 9 vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~ 88 (174)
T smart00174 9 VGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENV 88 (174)
T ss_pred CCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECCCHHHHHHH
Confidence 7999999999888875 457899999999999999999999999999999999999999999
Q ss_pred H-HHHHHHHHhcCCCceEEEEeC
Q psy16649 62 K-NWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 62 ~-~w~~~~~~~~~~~~piilvgN 83 (83)
. .|++.+.+.. +++|++||||
T Consensus 89 ~~~~~~~i~~~~-~~~piilv~n 110 (174)
T smart00174 89 KEKWYPEVKHFC-PNTPIILVGT 110 (174)
T ss_pred HHHHHHHHHhhC-CCCCEEEEec
Confidence 6 6999998766 6899999998
No 43
>PLN00023 GTP-binding protein; Provisional
Probab=99.92 E-value=1e-24 Score=135.17 Aligned_cols=83 Identities=19% Similarity=0.512 Sum_probs=74.0
Q ss_pred CCcceeeeeeccCccc-------------e--------------------EEEEEEEeCCCchhhhcchhhhccCCcEEE
Q psy16649 1 SGENLCTLQIFRGCFQ-------------H--------------------NFHINYRDTAGQERFRTITTAYYRGAMGIM 47 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------~--------------------~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i 47 (83)
+|||||+.++..+.|. + .+.++||||+|+++|+.+++.||++++++|
T Consensus 32 VGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL~~~yyr~AdgiI 111 (334)
T PLN00023 32 VGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKDCRSLFYSQINGVI 111 (334)
T ss_pred CcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhhhhHHhccCCCEEE
Confidence 6999999999887664 1 256899999999999999999999999999
Q ss_pred EEEECCChhHHHHHHHHHHHHHHhcC------------CCceEEEEeC
Q psy16649 48 LVYDITNEKSFDNIKNWIRNIEENAS------------ANVEKMLLGN 83 (83)
Q Consensus 48 lv~d~~~~~s~~~~~~w~~~~~~~~~------------~~~piilvgN 83 (83)
+|||+++++||+++..|++++.+... .++|++||||
T Consensus 112 LVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGN 159 (334)
T PLN00023 112 FVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGN 159 (334)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEE
Confidence 99999999999999999999987631 3599999998
No 44
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.92 E-value=1.2e-24 Score=127.63 Aligned_cols=83 Identities=30% Similarity=0.634 Sum_probs=74.4
Q ss_pred CCcceeeeeeccCccc---------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHH
Q psy16649 1 SGENLCTLQIFRGCFQ---------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFD 59 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~---------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~ 59 (83)
+|||||+.++..+.|. ..+.+++|||+|+++|+.+++.++++++++|+|||+++++||+
T Consensus 11 vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~ 90 (201)
T cd04107 11 VGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFE 90 (201)
T ss_pred CCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHH
Confidence 7999999999887653 2577899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc----CCCceEEEEeC
Q psy16649 60 NIKNWIRNIEENA----SANVEKMLLGN 83 (83)
Q Consensus 60 ~~~~w~~~~~~~~----~~~~piilvgN 83 (83)
++..|++++.... ..++|++||||
T Consensus 91 ~~~~~~~~i~~~~~~~~~~~~piilv~N 118 (201)
T cd04107 91 AVLKWKADLDSKVTLPNGEPIPCLLLAN 118 (201)
T ss_pred HHHHHHHHHHHhhcccCCCCCcEEEEEE
Confidence 9999999887642 36799999998
No 45
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.92 E-value=1.5e-24 Score=123.22 Aligned_cols=82 Identities=26% Similarity=0.594 Sum_probs=74.9
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+|||||+.++..+.|. ..+.+++|||+|+++|..+++.+++++|++++|||++++.+|++
T Consensus 11 vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~ 90 (161)
T cd04124 11 VGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKN 90 (161)
T ss_pred CCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHH
Confidence 7999999998877664 46789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
++.|++++++.. +++|+++|||
T Consensus 91 ~~~~~~~i~~~~-~~~p~ivv~n 112 (161)
T cd04124 91 LSKWYEELREYR-PEIPCIVVAN 112 (161)
T ss_pred HHHHHHHHHHhC-CCCcEEEEEE
Confidence 999999998765 6799999998
No 46
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.92 E-value=1.3e-24 Score=122.94 Aligned_cols=83 Identities=31% Similarity=0.569 Sum_probs=74.9
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 61 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~ 61 (83)
+|||||+.++..+.|. ..+.+++|||+|+++|..+++.|+++++++++|||+++++||+++
T Consensus 12 vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~ 91 (163)
T cd04136 12 VGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDL 91 (163)
T ss_pred CCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHH
Confidence 7999999998877663 457889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc-CCCceEEEEeC
Q psy16649 62 KNWIRNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 62 ~~w~~~~~~~~-~~~~piilvgN 83 (83)
..|.+++.+.. .+++|+++|||
T Consensus 92 ~~~~~~i~~~~~~~~~piilv~n 114 (163)
T cd04136 92 QDLREQILRVKDTENVPMVLVGN 114 (163)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEE
Confidence 99999998754 36899999997
No 47
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.91 E-value=1.6e-24 Score=122.87 Aligned_cols=83 Identities=29% Similarity=0.505 Sum_probs=74.8
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 61 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~ 61 (83)
+||||++.++..+.|. ..+.+++|||+|+++|..+++.|+++++++++|||+++++||+++
T Consensus 12 vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~ 91 (163)
T cd04176 12 VGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDI 91 (163)
T ss_pred CCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEEECCCHHHHHHH
Confidence 7999999888888764 356789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc-CCCceEEEEeC
Q psy16649 62 KNWIRNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 62 ~~w~~~~~~~~-~~~~piilvgN 83 (83)
..|+..+.+.. ..++|+++|||
T Consensus 92 ~~~~~~~~~~~~~~~~piviv~n 114 (163)
T cd04176 92 KPMRDQIVRVKGYEKVPIILVGN 114 (163)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEE
Confidence 99999998754 36899999997
No 48
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.91 E-value=2.1e-24 Score=123.36 Aligned_cols=82 Identities=29% Similarity=0.605 Sum_probs=75.2
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
|||||++.++..+.+. ..+.+++|||+|++++..+++.+++++|++|+|||+++++||+.
T Consensus 11 vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~ 90 (166)
T cd00877 11 TGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVTYKN 90 (166)
T ss_pred CCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEEECCCHHHHHH
Confidence 7999999999877654 35788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
++.|++++.+.. .++|+++|||
T Consensus 91 ~~~~~~~i~~~~-~~~piiiv~n 112 (166)
T cd00877 91 VPNWHRDLVRVC-GNIPIVLCGN 112 (166)
T ss_pred HHHHHHHHHHhC-CCCcEEEEEE
Confidence 999999998877 4899999998
No 49
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.91 E-value=1.8e-24 Score=122.86 Aligned_cols=83 Identities=29% Similarity=0.560 Sum_probs=75.3
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 61 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~ 61 (83)
+||||++.++..+.|. ..+.+++|||+|+++|..+++.++++++++++|||+++++||+++
T Consensus 12 ~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~ 91 (164)
T cd04175 12 VGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDL 91 (164)
T ss_pred CCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHH
Confidence 7999999999877664 467899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc-CCCceEEEEeC
Q psy16649 62 KNWIRNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 62 ~~w~~~~~~~~-~~~~piilvgN 83 (83)
.+|...+.+.. .+++|++||||
T Consensus 92 ~~~~~~i~~~~~~~~~piilv~n 114 (164)
T cd04175 92 QDLREQILRVKDTEDVPMILVGN 114 (164)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEE
Confidence 99999987653 46899999998
No 50
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.91 E-value=2.7e-24 Score=122.71 Aligned_cols=83 Identities=63% Similarity=1.024 Sum_probs=76.6
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+||||++.++..+.|. ..+++++||++|++++..++..+++++|++++|||+++++||++
T Consensus 14 ~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~ 93 (167)
T cd01867 14 VGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKSFEN 93 (167)
T ss_pred CCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHh
Confidence 7999999999888765 45789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
+++|++++.+....++|+++|||
T Consensus 94 ~~~~~~~i~~~~~~~~p~iiv~n 116 (167)
T cd01867 94 IRNWMRNIEEHASEDVERMLVGN 116 (167)
T ss_pred HHHHHHHHHHhCCCCCcEEEEEE
Confidence 99999999887667899999997
No 51
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.91 E-value=3.1e-24 Score=122.10 Aligned_cols=83 Identities=47% Similarity=0.879 Sum_probs=75.9
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+|||+++.++..+.|. ..+++++||++|++++..++..++++++++++|||+++++||++
T Consensus 13 vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~ 92 (166)
T cd01869 13 VGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNN 92 (166)
T ss_pred CCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHh
Confidence 7999999999887764 34688999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
+..|++++.+...+++|+++|||
T Consensus 93 l~~~~~~~~~~~~~~~~~iiv~n 115 (166)
T cd01869 93 VKQWLQEIDRYASENVNKLLVGN 115 (166)
T ss_pred HHHHHHHHHHhCCCCCcEEEEEE
Confidence 99999999887656899999997
No 52
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.91 E-value=3.7e-24 Score=123.10 Aligned_cols=83 Identities=42% Similarity=0.775 Sum_probs=74.1
Q ss_pred CCcceeeeeeccCccc------------------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEE
Q psy16649 1 SGENLCTLQIFRGCFQ------------------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVY 50 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~------------------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~ 50 (83)
||||||+.++..+.|. ..+.+++|||+|+++|..++..++++++++++||
T Consensus 15 vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~ 94 (180)
T cd04127 15 VGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIF 94 (180)
T ss_pred CCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHHHhCCCCEEEEEE
Confidence 7999999998776553 2378899999999999999999999999999999
Q ss_pred ECCChhHHHHHHHHHHHHHHhc-CCCceEEEEeC
Q psy16649 51 DITNEKSFDNIKNWIRNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 51 d~~~~~s~~~~~~w~~~~~~~~-~~~~piilvgN 83 (83)
|+++++||++++.|++++.... .+++|+++|||
T Consensus 95 d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~n 128 (180)
T cd04127 95 DLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGN 128 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEe
Confidence 9999999999999999998754 36899999998
No 53
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.91 E-value=3.6e-24 Score=123.96 Aligned_cols=82 Identities=23% Similarity=0.452 Sum_probs=73.9
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+||||++.++..+.|. ..+.+++|||+|+++|..+++.+++++|++++|||+++++||++
T Consensus 11 vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~ 90 (187)
T cd04132 11 CGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTSLDN 90 (187)
T ss_pred CCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHHHHHH
Confidence 7999999999888764 35789999999999999999999999999999999999999999
Q ss_pred HH-HHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IK-NWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~-~w~~~~~~~~~~~~piilvgN 83 (83)
+. .|+.++.... +++|+++|||
T Consensus 91 ~~~~~~~~~~~~~-~~~piilv~n 113 (187)
T cd04132 91 VEDKWFPEVNHFC-PGTPIMLVGL 113 (187)
T ss_pred HHHHHHHHHHHhC-CCCCEEEEEe
Confidence 96 6998887655 6899999998
No 54
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.91 E-value=4.6e-24 Score=121.80 Aligned_cols=83 Identities=31% Similarity=0.573 Sum_probs=74.5
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+|||||+.++..+.|. ..++++|||++|+++++.++..++++++++++|||+++++||+.
T Consensus 16 ~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~ 95 (170)
T cd04116 16 VGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQN 95 (170)
T ss_pred CCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHh
Confidence 7999999999877765 45678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc----CCCceEEEEeC
Q psy16649 61 IKNWIRNIEENA----SANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~----~~~~piilvgN 83 (83)
+..|..++.... ++++|+++|||
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~piilv~n 122 (170)
T cd04116 96 LSNWKKEFIYYADVKEPESFPFVVLGN 122 (170)
T ss_pred HHHHHHHHHHhcccccCCCCcEEEEEE
Confidence 999999887643 25799999998
No 55
>PTZ00369 Ras-like protein; Provisional
Probab=99.91 E-value=3.5e-24 Score=124.61 Aligned_cols=83 Identities=30% Similarity=0.521 Sum_probs=75.1
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 61 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~ 61 (83)
+|||||+.++..+.|. ..+.+++|||+|+++|..+++.|+++++++++|||+++++||+.+
T Consensus 16 ~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~ 95 (189)
T PTZ00369 16 VGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEI 95 (189)
T ss_pred CCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHHHHHHH
Confidence 7999999999887763 456799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc-CCCceEEEEeC
Q psy16649 62 KNWIRNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 62 ~~w~~~~~~~~-~~~~piilvgN 83 (83)
..|++++.+.. .+++|+++|||
T Consensus 96 ~~~~~~i~~~~~~~~~piiiv~n 118 (189)
T PTZ00369 96 ASFREQILRVKDKDRVPMILVGN 118 (189)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEE
Confidence 99999997754 36899999997
No 56
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.91 E-value=4.2e-24 Score=126.51 Aligned_cols=83 Identities=27% Similarity=0.452 Sum_probs=74.7
Q ss_pred CCcceeeeeeccCccc---------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHH
Q psy16649 1 SGENLCTLQIFRGCFQ---------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFD 59 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~---------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~ 59 (83)
+|||||+.++..+.|. ..++++||||+|++.+..+++.|++++|++|+|||+++++||+
T Consensus 11 vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~ 90 (215)
T cd04109 11 VGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFE 90 (215)
T ss_pred CCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHH
Confidence 7999999999877664 2578899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcC---CCceEEEEeC
Q psy16649 60 NIKNWIRNIEENAS---ANVEKMLLGN 83 (83)
Q Consensus 60 ~~~~w~~~~~~~~~---~~~piilvgN 83 (83)
++..|++++.+... .++|+++|||
T Consensus 91 ~~~~w~~~l~~~~~~~~~~~piilVgN 117 (215)
T cd04109 91 NLEDWYSMVRKVLKSSETQPLVVLVGN 117 (215)
T ss_pred HHHHHHHHHHHhccccCCCceEEEEEE
Confidence 99999999987642 4689999998
No 57
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.91 E-value=5.1e-24 Score=121.18 Aligned_cols=83 Identities=41% Similarity=0.757 Sum_probs=75.5
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+||||++.++..+.|. ..+.+++|||+|++++..++..+++.+|++++|||+++++||+.
T Consensus 14 ~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~ 93 (165)
T cd01864 14 VGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFES 93 (165)
T ss_pred CCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHh
Confidence 7999999999776654 34689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
++.|+.++.....+++|+++|||
T Consensus 94 ~~~~~~~i~~~~~~~~p~ivv~n 116 (165)
T cd01864 94 VPHWIEEVEKYGASNVVLLLIGN 116 (165)
T ss_pred HHHHHHHHHHhCCCCCcEEEEEE
Confidence 99999999887667899999997
No 58
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.91 E-value=5.5e-24 Score=123.94 Aligned_cols=83 Identities=47% Similarity=0.795 Sum_probs=75.5
Q ss_pred CCcceeeeeeccCccc---------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHH
Q psy16649 1 SGENLCTLQIFRGCFQ---------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFD 59 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~---------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~ 59 (83)
+|||||+.++..+.|. ..+.++||||+|++++..++..++++++++|+|||+++++||+
T Consensus 11 vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~ 90 (191)
T cd04112 11 VGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKASFD 90 (191)
T ss_pred CCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHHHH
Confidence 7999999988776663 3468999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 60 NIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 60 ~~~~w~~~~~~~~~~~~piilvgN 83 (83)
++..|++.+.+..+.++|+++|||
T Consensus 91 ~~~~~~~~i~~~~~~~~piiiv~N 114 (191)
T cd04112 91 NIRAWLTEIKEYAQEDVVIMLLGN 114 (191)
T ss_pred HHHHHHHHHHHhCCCCCcEEEEEE
Confidence 999999999987767899999998
No 59
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.91 E-value=5.9e-24 Score=120.94 Aligned_cols=78 Identities=18% Similarity=0.395 Sum_probs=68.3
Q ss_pred CCcceeeeeeccCccc------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIK 62 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~ 62 (83)
+||||++.++..+.|. +.+.+++|||+|+++ ..|++++|++++|||+++++||+++.
T Consensus 11 vGKTsli~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~~~~~sf~~~~ 85 (158)
T cd04103 11 SGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSLENEASFQTVY 85 (158)
T ss_pred CcHHHHHHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEECCCHHHHHHHH
Confidence 7999999998776553 457899999999975 45788999999999999999999999
Q ss_pred HHHHHHHHhcC-CCceEEEEeC
Q psy16649 63 NWIRNIEENAS-ANVEKMLLGN 83 (83)
Q Consensus 63 ~w~~~~~~~~~-~~~piilvgN 83 (83)
.|++++..... +++|++||||
T Consensus 86 ~~~~~i~~~~~~~~~piilvgn 107 (158)
T cd04103 86 NLYHQLSSYRNISEIPLILVGT 107 (158)
T ss_pred HHHHHHHHhcCCCCCCEEEEee
Confidence 99999987653 6799999998
No 60
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.91 E-value=8.2e-24 Score=122.76 Aligned_cols=83 Identities=40% Similarity=0.717 Sum_probs=76.3
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+|||||+.++..+.|. ..+.+++||++|+++|..++..++++++++++|||+++++||++
T Consensus 11 vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~ 90 (188)
T cd04125 11 VGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFEN 90 (188)
T ss_pred CCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHHH
Confidence 7999999999988775 35678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
+..|++++....+..+|+++|||
T Consensus 91 i~~~~~~i~~~~~~~~~~ivv~n 113 (188)
T cd04125 91 LKFWINEINRYARENVIKVIVAN 113 (188)
T ss_pred HHHHHHHHHHhCCCCCeEEEEEE
Confidence 99999999887667799999997
No 61
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.90 E-value=9.6e-24 Score=119.89 Aligned_cols=83 Identities=42% Similarity=0.812 Sum_probs=75.9
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
|||||++.++..+.+. ..+++++||++|++++..+++.++++++++++|||+++++||++
T Consensus 14 ~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~ 93 (165)
T cd01868 14 VGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQTFEN 93 (165)
T ss_pred CCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHH
Confidence 7999999999877654 44789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
+.+|++++.+..+.++|+++|||
T Consensus 94 ~~~~~~~~~~~~~~~~pi~vv~n 116 (165)
T cd01868 94 VERWLKELRDHADSNIVIMLVGN 116 (165)
T ss_pred HHHHHHHHHHhCCCCCeEEEEEE
Confidence 99999999887766799999997
No 62
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.90 E-value=1.1e-23 Score=120.33 Aligned_cols=83 Identities=41% Similarity=0.775 Sum_probs=76.0
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+|||+|+.++..+.+. ..+.+.+||++|++++..++..++++++++++|||+++++||+.
T Consensus 15 vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~ 94 (168)
T cd01866 15 VGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNH 94 (168)
T ss_pred CCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHH
Confidence 7999999999877643 45789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
+..|++++++...+++|+++|||
T Consensus 95 ~~~~~~~~~~~~~~~~pvivv~n 117 (168)
T cd01866 95 LTSWLEDARQHSNSNMTIMLIGN 117 (168)
T ss_pred HHHHHHHHHHhCCCCCcEEEEEE
Confidence 99999999887667899999997
No 63
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.90 E-value=1.1e-23 Score=119.32 Aligned_cols=83 Identities=22% Similarity=0.613 Sum_probs=75.2
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+||||++.++..+.|. ..+.+++|||+|++++..+++.++++++++|+|||+++++||+.
T Consensus 11 vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~ 90 (168)
T cd04119 11 VGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEA 90 (168)
T ss_pred CCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHHHHh
Confidence 7999999998877653 46789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcC-----CCceEEEEeC
Q psy16649 61 IKNWIRNIEENAS-----ANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~-----~~~piilvgN 83 (83)
+..|++++.+... .++|+++|||
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~piilv~n 118 (168)
T cd04119 91 LDSWLKEMKQEGGPHGNMENIVVVVCAN 118 (168)
T ss_pred HHHHHHHHHHhccccccCCCceEEEEEE
Confidence 9999999988653 4799999997
No 64
>PLN03110 Rab GTPase; Provisional
Probab=99.90 E-value=1.1e-23 Score=124.98 Aligned_cols=83 Identities=43% Similarity=0.795 Sum_probs=76.4
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+|||+|+.++..+.|. ..+.+++|||+|++++..++..++++++++++|||+++++||++
T Consensus 23 vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 102 (216)
T PLN03110 23 VGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDN 102 (216)
T ss_pred CCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHH
Confidence 7999999998877664 45799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
+..|+..+....+.++|+++|||
T Consensus 103 ~~~~~~~~~~~~~~~~piiiv~n 125 (216)
T PLN03110 103 VQRWLRELRDHADSNIVIMMAGN 125 (216)
T ss_pred HHHHHHHHHHhCCCCCeEEEEEE
Confidence 99999999887767899999997
No 65
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.90 E-value=7.5e-24 Score=120.67 Aligned_cols=83 Identities=24% Similarity=0.425 Sum_probs=74.7
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 61 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~ 61 (83)
+||||++.++..+.|. ..+.+++|||+|+++|..++..++++++++++|||+++++||+++
T Consensus 12 vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~ 91 (165)
T cd04140 12 VGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQSLEEL 91 (165)
T ss_pred CCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHHHHHHH
Confidence 7999999999888764 457899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc---CCCceEEEEeC
Q psy16649 62 KNWIRNIEENA---SANVEKMLLGN 83 (83)
Q Consensus 62 ~~w~~~~~~~~---~~~~piilvgN 83 (83)
+.|++.+++.. .+++|+++|||
T Consensus 92 ~~~~~~i~~~~~~~~~~~piilv~n 116 (165)
T cd04140 92 KPIYELICEIKGNNIEKIPIMLVGN 116 (165)
T ss_pred HHHHHHHHHHhcCCCCCCCEEEEEE
Confidence 99998887753 26799999998
No 66
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.90 E-value=8.4e-24 Score=127.68 Aligned_cols=83 Identities=19% Similarity=0.382 Sum_probs=74.6
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 61 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~ 61 (83)
+|||||+.++..+.|. +.+.++||||+|+++|..++..++.++|++|+|||+++++||+++
T Consensus 11 vGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i 90 (247)
T cd04143 11 VGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEV 90 (247)
T ss_pred CCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHHHHHHH
Confidence 7999999999887775 457899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh---------cCCCceEEEEeC
Q psy16649 62 KNWIRNIEEN---------ASANVEKMLLGN 83 (83)
Q Consensus 62 ~~w~~~~~~~---------~~~~~piilvgN 83 (83)
..|++++.+. ...++|++||||
T Consensus 91 ~~~~~~I~~~k~~~~~~~~~~~~~piIivgN 121 (247)
T cd04143 91 CRLREQILETKSCLKNKTKENVKIPMVICGN 121 (247)
T ss_pred HHHHHHHHHhhcccccccccCCCCcEEEEEE
Confidence 9999998764 225799999998
No 67
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.90 E-value=9.3e-24 Score=119.48 Aligned_cols=82 Identities=33% Similarity=0.653 Sum_probs=74.4
Q ss_pred CCcceeeeeeccCccc----------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHH
Q psy16649 1 SGENLCTLQIFRGCFQ----------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSF 58 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~----------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~ 58 (83)
+||||++.++..+.|. ..+++++|||+|+++|..++..++++++++++|||+++++||
T Consensus 11 ~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~ 90 (162)
T cd04106 11 VGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESF 90 (162)
T ss_pred CCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHHH
Confidence 7999999999887663 246799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 59 DNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 59 ~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
+.+..|+.++.+.. +++|+++|||
T Consensus 91 ~~l~~~~~~~~~~~-~~~p~iiv~n 114 (162)
T cd04106 91 EAIESWKEKVEAEC-GDIPMVLVQT 114 (162)
T ss_pred HHHHHHHHHHHHhC-CCCCEEEEEE
Confidence 99999999997665 6899999997
No 68
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.90 E-value=1.3e-23 Score=118.90 Aligned_cols=83 Identities=41% Similarity=0.753 Sum_probs=76.1
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+|||||+.++..+.+. ..+++++||++|+++|..+++.++++++++++|||++++++|++
T Consensus 11 vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~ 90 (161)
T cd04113 11 TGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEA 90 (161)
T ss_pred CCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHH
Confidence 7999999999877754 35789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
+..|+++++....+++|+++|||
T Consensus 91 ~~~~~~~~~~~~~~~~~iivv~n 113 (161)
T cd04113 91 LPTWLSDARALASPNIVVILVGN 113 (161)
T ss_pred HHHHHHHHHHhCCCCCeEEEEEE
Confidence 99999999877668899999997
No 69
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.90 E-value=1e-23 Score=123.58 Aligned_cols=82 Identities=46% Similarity=0.834 Sum_probs=74.5
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+|||||+.++..+.|. ..+.+++||++|+++++.++..++++++++++|||+++++||+.
T Consensus 17 vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~ 96 (199)
T cd04110 17 VGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVN 96 (199)
T ss_pred CCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHH
Confidence 7999999999877654 34689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
+..|++++.... +.+|+++|||
T Consensus 97 ~~~~~~~i~~~~-~~~piivVgN 118 (199)
T cd04110 97 VKRWLQEIEQNC-DDVCKVLVGN 118 (199)
T ss_pred HHHHHHHHHHhC-CCCCEEEEEE
Confidence 999999987765 6899999997
No 70
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.90 E-value=9.9e-24 Score=121.02 Aligned_cols=82 Identities=23% Similarity=0.470 Sum_probs=73.4
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 61 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~ 61 (83)
+||||++.++..+.|. ..+++++|||+|+++|..+++.+++++|++|+|||+++++||+++
T Consensus 11 ~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~ 90 (173)
T cd04130 11 VGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNI 90 (173)
T ss_pred CCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEECCCHHHHHHH
Confidence 7999999998777665 357899999999999999999999999999999999999999998
Q ss_pred H-HHHHHHHHhcCCCceEEEEeC
Q psy16649 62 K-NWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 62 ~-~w~~~~~~~~~~~~piilvgN 83 (83)
. .|++.++... +++|+++|||
T Consensus 91 ~~~~~~~~~~~~-~~~piilv~n 112 (173)
T cd04130 91 SEKWIPEIRKHN-PKAPIILVGT 112 (173)
T ss_pred HHHHHHHHHhhC-CCCCEEEEee
Confidence 5 7999888654 5799999998
No 71
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.90 E-value=1e-23 Score=120.43 Aligned_cols=82 Identities=12% Similarity=0.260 Sum_probs=74.8
Q ss_pred CCcceeeeeeccCccc----------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ----------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNW 64 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~----------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w 64 (83)
+||||++.++..+.+. ..+++++||++|+++++.+++.++++++++++|||.+++++|.+++.|
T Consensus 10 vGKTsli~~~~~~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~ 89 (164)
T cd04162 10 AGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQE 89 (164)
T ss_pred CCHHHHHHHHhcCCCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHH
Confidence 7999999999988665 457899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCceEEEEeC
Q psy16649 65 IRNIEENASANVEKMLLGN 83 (83)
Q Consensus 65 ~~~~~~~~~~~~piilvgN 83 (83)
+.++.... +++|+++|||
T Consensus 90 l~~~~~~~-~~~piilv~N 107 (164)
T cd04162 90 LHQLLQHP-PDLPLVVLAN 107 (164)
T ss_pred HHHHHhCC-CCCcEEEEEe
Confidence 98886554 6899999998
No 72
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.90 E-value=2.5e-23 Score=120.99 Aligned_cols=82 Identities=27% Similarity=0.545 Sum_probs=73.9
Q ss_pred CCcceeeeeeccCccc---------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHH
Q psy16649 1 SGENLCTLQIFRGCFQ---------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFD 59 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~---------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~ 59 (83)
+|||||+.++..+.|. ..+++++||++|++++..++..++++++++++|||+++++||+
T Consensus 11 vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~ 90 (193)
T cd04118 11 VGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFE 90 (193)
T ss_pred CCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHHHHH
Confidence 6999999998887663 3467889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 60 NIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 60 ~~~~w~~~~~~~~~~~~piilvgN 83 (83)
++..|+++++... +++|+++|||
T Consensus 91 ~~~~~~~~i~~~~-~~~piilv~n 113 (193)
T cd04118 91 RAKFWVKELQNLE-EHCKIYLCGT 113 (193)
T ss_pred HHHHHHHHHHhcC-CCCCEEEEEE
Confidence 9999999998764 5799999997
No 73
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.89 E-value=2.1e-23 Score=118.54 Aligned_cols=83 Identities=14% Similarity=0.348 Sum_probs=72.1
Q ss_pred CCcceeeeeeccCccc---------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ---------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWI 65 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~---------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~ 65 (83)
|||||++.++..+.|. +.+.+++||++|++++..+++.|+++++++++|||++++++|+++..|+
T Consensus 11 ~GKTsli~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~ 90 (159)
T cd04150 11 AGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREEL 90 (159)
T ss_pred CCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHH
Confidence 7999999999776664 3478999999999999999999999999999999999999999999887
Q ss_pred HHHHHh-cCCCceEEEEeC
Q psy16649 66 RNIEEN-ASANVEKMLLGN 83 (83)
Q Consensus 66 ~~~~~~-~~~~~piilvgN 83 (83)
.++... ...++|++|+||
T Consensus 91 ~~~~~~~~~~~~piilv~N 109 (159)
T cd04150 91 QRMLNEDELRDAVLLVFAN 109 (159)
T ss_pred HHHHhcHHhcCCCEEEEEE
Confidence 776442 225689999997
No 74
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.89 E-value=3.3e-23 Score=116.81 Aligned_cols=83 Identities=30% Similarity=0.554 Sum_probs=74.6
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 61 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~ 61 (83)
+|||||+.++..+.|. ..+.+++|||+|+++|+.+++.|+++++++++|||++++++|+++
T Consensus 12 vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~ 91 (162)
T cd04138 12 VGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDI 91 (162)
T ss_pred CCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHHHHHHH
Confidence 7999999999887764 346689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc-CCCceEEEEeC
Q psy16649 62 KNWIRNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 62 ~~w~~~~~~~~-~~~~piilvgN 83 (83)
..|+..+.+.. ..++|+++|||
T Consensus 92 ~~~~~~i~~~~~~~~~piivv~n 114 (162)
T cd04138 92 HTYREQIKRVKDSDDVPMVLVGN 114 (162)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEE
Confidence 99999998764 35899999997
No 75
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.89 E-value=4e-23 Score=118.23 Aligned_cols=83 Identities=36% Similarity=0.724 Sum_probs=74.3
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhh-cchhhhccCCcEEEEEEECCChhHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFR-TITTAYYRGAMGIMLVYDITNEKSFD 59 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~-~~~~~~~~~~~~~ilv~d~~~~~s~~ 59 (83)
+||||++.++..+.+. ..+.+++||++|+++++ .+++.+++++|++++|||+++++||+
T Consensus 13 vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~ 92 (170)
T cd04115 13 VGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFH 92 (170)
T ss_pred CCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHH
Confidence 7999999999877764 45789999999999997 58899999999999999999999999
Q ss_pred HHHHHHHHHHHhc-CCCceEEEEeC
Q psy16649 60 NIKNWIRNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 60 ~~~~w~~~~~~~~-~~~~piilvgN 83 (83)
.+..|++++.... ..++|+++|||
T Consensus 93 ~~~~~~~~~~~~~~~~~~p~iiv~n 117 (170)
T cd04115 93 SLPSWIEECEQHSLPNEVPRILVGN 117 (170)
T ss_pred hHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 9999999998754 36899999997
No 76
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.89 E-value=3.5e-23 Score=122.42 Aligned_cols=83 Identities=35% Similarity=0.697 Sum_probs=74.5
Q ss_pred CCcceeeeeeccCccc---------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHH
Q psy16649 1 SGENLCTLQIFRGCFQ---------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFD 59 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~---------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~ 59 (83)
+|||||+.++..+.|. ..+++++|||+|++++..++..++++++++++|||+++++||+
T Consensus 13 vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~ 92 (211)
T cd04111 13 VGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFE 92 (211)
T ss_pred CCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHHHH
Confidence 6999999999877764 2478999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcC-CCceEEEEeC
Q psy16649 60 NIKNWIRNIEENAS-ANVEKMLLGN 83 (83)
Q Consensus 60 ~~~~w~~~~~~~~~-~~~piilvgN 83 (83)
++.+|++++.+... ..+|++||||
T Consensus 93 ~l~~~~~~i~~~~~~~~~~iilvgN 117 (211)
T cd04111 93 HVHDWLEEARSHIQPHRPVFILVGH 117 (211)
T ss_pred HHHHHHHHHHHhcCCCCCeEEEEEE
Confidence 99999999987653 5688999997
No 77
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.89 E-value=5e-23 Score=116.37 Aligned_cols=83 Identities=35% Similarity=0.652 Sum_probs=75.2
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
||||||+.++..+.+. ..+++++||++|++++..++..++++++++++|||+++++||+.
T Consensus 11 ~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~ 90 (161)
T cd01861 11 VGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDN 90 (161)
T ss_pred CCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHH
Confidence 7999999998877664 34679999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
+..|++++....+.++|++++||
T Consensus 91 ~~~~~~~~~~~~~~~~~iilv~n 113 (161)
T cd01861 91 TDKWIDDVRDERGNDVIIVLVGN 113 (161)
T ss_pred HHHHHHHHHHhCCCCCEEEEEEE
Confidence 99999999876656799999997
No 78
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.89 E-value=2e-23 Score=119.66 Aligned_cols=83 Identities=20% Similarity=0.397 Sum_probs=72.7
Q ss_pred CCcceeeeeeccCccc---------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ---------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWI 65 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~---------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~ 65 (83)
+||||++.++..+.+. ..+++++|||+|+++++.+++.++++++++++|||++++.+|+++..|+
T Consensus 20 ~GKTsli~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~ 99 (168)
T cd04149 20 AGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQEL 99 (168)
T ss_pred CCHHHHHHHHccCCCccccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHH
Confidence 7999999999876664 3488999999999999999999999999999999999999999999888
Q ss_pred HHHHHhc-CCCceEEEEeC
Q psy16649 66 RNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 66 ~~~~~~~-~~~~piilvgN 83 (83)
.++.... .+++|++||||
T Consensus 100 ~~~~~~~~~~~~piilv~N 118 (168)
T cd04149 100 HRIINDREMRDALLLVFAN 118 (168)
T ss_pred HHHhcCHhhcCCcEEEEEE
Confidence 7775432 25799999998
No 79
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.89 E-value=3e-23 Score=119.51 Aligned_cols=83 Identities=17% Similarity=0.348 Sum_probs=73.3
Q ss_pred CCcceeeeeeccCccc---------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ---------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWI 65 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~---------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~ 65 (83)
+|||||+.++..+.|. ..+++++|||+|+++++.+++.|+++++++|+|||++++++|+++..|+
T Consensus 24 ~GKTsL~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l 103 (175)
T smart00177 24 AGKTTILYKLKLGESVTTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREEL 103 (175)
T ss_pred CCHHHHHHHHhcCCCCCcCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHH
Confidence 7999999999877764 4578999999999999999999999999999999999999999999888
Q ss_pred HHHHHhc-CCCceEEEEeC
Q psy16649 66 RNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 66 ~~~~~~~-~~~~piilvgN 83 (83)
.++.... .+++|++||||
T Consensus 104 ~~~~~~~~~~~~piilv~N 122 (175)
T smart00177 104 HRMLNEDELRDAVILVFAN 122 (175)
T ss_pred HHHhhCHhhcCCcEEEEEe
Confidence 8875432 35799999998
No 80
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.89 E-value=2.5e-23 Score=120.57 Aligned_cols=83 Identities=14% Similarity=0.331 Sum_probs=72.5
Q ss_pred CCcceeeeeeccCccc---------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ---------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWI 65 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~---------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~ 65 (83)
|||||++.++..+.|. ..+.+++||++|+++++.++..|++++|++|+|||++++++|+++..|+
T Consensus 28 ~GKTsl~~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l 107 (181)
T PLN00223 28 AGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL 107 (181)
T ss_pred CCHHHHHHHHccCCCccccCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHH
Confidence 7999999999877664 3478999999999999999999999999999999999999999998887
Q ss_pred HHHHHh-cCCCceEEEEeC
Q psy16649 66 RNIEEN-ASANVEKMLLGN 83 (83)
Q Consensus 66 ~~~~~~-~~~~~piilvgN 83 (83)
..+... ..+++|++||||
T Consensus 108 ~~~l~~~~~~~~piilv~N 126 (181)
T PLN00223 108 HRMLNEDELRDAVLLVFAN 126 (181)
T ss_pred HHHhcCHhhCCCCEEEEEE
Confidence 776432 225799999998
No 81
>KOG0395|consensus
Probab=99.89 E-value=1.1e-22 Score=119.27 Aligned_cols=83 Identities=34% Similarity=0.535 Sum_probs=77.2
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 61 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~ 61 (83)
+|||+++.||..+.|. +.+.|.|+||+|++.|..++..|+++++++++||+++++.||+.+
T Consensus 14 VGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~ 93 (196)
T KOG0395|consen 14 VGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRSSFEEA 93 (196)
T ss_pred CCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCHHHHHHH
Confidence 6999999999999998 778889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc-CCCceEEEEeC
Q psy16649 62 KNWIRNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 62 ~~w~~~~~~~~-~~~~piilvgN 83 (83)
+.+++++.+.. ...+|++||||
T Consensus 94 ~~l~~~I~r~~~~~~~PivlVGN 116 (196)
T KOG0395|consen 94 KQLREQILRVKGRDDVPIILVGN 116 (196)
T ss_pred HHHHHHHHHhhCcCCCCEEEEEE
Confidence 99999995543 46799999998
No 82
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.88 E-value=1e-22 Score=115.48 Aligned_cols=83 Identities=35% Similarity=0.584 Sum_probs=74.2
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 61 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~ 61 (83)
+||||++.++..+.+. ..+.+++|||+|+++|..+++.++++++++++|||++++++|+++
T Consensus 11 ~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~ 90 (164)
T smart00173 11 VGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEI 90 (164)
T ss_pred CCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEECCCHHHHHHH
Confidence 7999999998876653 457899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc-CCCceEEEEeC
Q psy16649 62 KNWIRNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 62 ~~w~~~~~~~~-~~~~piilvgN 83 (83)
..|.+.+.+.. ..+.|+++|||
T Consensus 91 ~~~~~~i~~~~~~~~~pii~v~n 113 (164)
T smart00173 91 KKFREQILRVKDRDDVPIVLVGN 113 (164)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEE
Confidence 99999887653 35799999997
No 83
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.88 E-value=1.1e-22 Score=119.22 Aligned_cols=64 Identities=22% Similarity=0.358 Sum_probs=57.3
Q ss_pred eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHH-HHHHHHHHhcCCCceEEEEeC
Q psy16649 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIK-NWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~-~w~~~~~~~~~~~~piilvgN 83 (83)
+.++|++|||+|+++ .+++.||++++++|+|||+++++||++++ .|++++++.. +++|++||||
T Consensus 64 ~~v~l~iwDTaG~~~--~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgN 128 (195)
T cd01873 64 VSVSLRLWDTFGDHD--KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGC 128 (195)
T ss_pred EEEEEEEEeCCCChh--hhhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEE
Confidence 368999999999986 36778999999999999999999999997 6999998776 5899999998
No 84
>PLN03108 Rab family protein; Provisional
Probab=99.88 E-value=1.4e-22 Score=119.68 Aligned_cols=83 Identities=43% Similarity=0.777 Sum_probs=75.1
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+|||||+.++..+.|. ..+.+++|||+|+++|..++..++++++++++|||+++++||+.
T Consensus 17 vGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~ 96 (210)
T PLN03108 17 VGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNH 96 (210)
T ss_pred CCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHH
Confidence 7999999998876553 35689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
+..|++++.....+.+|+++|||
T Consensus 97 l~~~~~~~~~~~~~~~piiiv~n 119 (210)
T PLN03108 97 LASWLEDARQHANANMTIMLIGN 119 (210)
T ss_pred HHHHHHHHHHhcCCCCcEEEEEE
Confidence 99999998777667899999997
No 85
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.88 E-value=1.4e-22 Score=114.90 Aligned_cols=82 Identities=24% Similarity=0.544 Sum_probs=73.0
Q ss_pred CCcceeeeeeccC--ccc---------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhH
Q psy16649 1 SGENLCTLQIFRG--CFQ---------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKS 57 (83)
Q Consensus 1 ~GKss~~~~~~~~--~~~---------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s 57 (83)
|||||++.++..+ .|+ ..+++.+|||+|++++..+++.+++++|++++|||+++++|
T Consensus 11 ~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s 90 (164)
T cd04101 11 VGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKAS 90 (164)
T ss_pred CCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHH
Confidence 7999999988654 232 45889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 58 FDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 58 ~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
|++++.|++++.+.. +++|+++|||
T Consensus 91 ~~~~~~~~~~~~~~~-~~~p~ilv~n 115 (164)
T cd04101 91 FENCSRWVNKVRTAS-KHMPGVLVGN 115 (164)
T ss_pred HHHHHHHHHHHHHhC-CCCCEEEEEE
Confidence 999999999998775 6799999997
No 86
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.88 E-value=2.2e-22 Score=113.93 Aligned_cols=83 Identities=28% Similarity=0.503 Sum_probs=73.4
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 61 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~ 61 (83)
+||||++.++..+.+. ..+++++|||+|++++..++..++++++++++|||++++++|+++
T Consensus 13 ~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~ 92 (164)
T cd04145 13 VGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEV 92 (164)
T ss_pred CcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHH
Confidence 6999999987765543 346789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc-CCCceEEEEeC
Q psy16649 62 KNWIRNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 62 ~~w~~~~~~~~-~~~~piilvgN 83 (83)
..|++++.+.. ..++|++++||
T Consensus 93 ~~~~~~~~~~~~~~~~piiiv~N 115 (164)
T cd04145 93 DKFHTQILRVKDRDEFPMILVGN 115 (164)
T ss_pred HHHHHHHHHHhCCCCCCEEEEee
Confidence 99999987753 36899999998
No 87
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.88 E-value=3.8e-22 Score=112.86 Aligned_cols=83 Identities=49% Similarity=0.858 Sum_probs=75.8
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
|||||++.++..+.+. ..+.+++||++|++++..++..+++++|++++|||++++++|+.
T Consensus 11 ~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~ 90 (164)
T smart00175 11 VGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFEN 90 (164)
T ss_pred CCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHH
Confidence 7999999999876654 44789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
+..|+.++.....+++|+++|+|
T Consensus 91 ~~~~l~~~~~~~~~~~pivvv~n 113 (164)
T smart00175 91 LKNWLKELREYADPNVVIMLVGN 113 (164)
T ss_pred HHHHHHHHHHhCCCCCeEEEEEE
Confidence 99999999887767899999997
No 88
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.88 E-value=2.9e-22 Score=114.69 Aligned_cols=82 Identities=24% Similarity=0.470 Sum_probs=73.7
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 61 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~ 61 (83)
||||||+.++..+.|. ..+.+.+|||+|+++|..+++.++++++++++|||+++++||+++
T Consensus 12 ~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~ 91 (175)
T cd01870 12 CGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENI 91 (175)
T ss_pred CCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEECCCHHHHHHH
Confidence 7999999999988764 457899999999999999999999999999999999999999999
Q ss_pred H-HHHHHHHHhcCCCceEEEEeC
Q psy16649 62 K-NWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 62 ~-~w~~~~~~~~~~~~piilvgN 83 (83)
. .|.+++++.. ++.|+++|||
T Consensus 92 ~~~~~~~~~~~~-~~~piilv~n 113 (175)
T cd01870 92 PEKWTPEVKHFC-PNVPIILVGN 113 (175)
T ss_pred HHHHHHHHHhhC-CCCCEEEEee
Confidence 6 6998887664 5899999998
No 89
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.87 E-value=5.2e-22 Score=112.38 Aligned_cols=83 Identities=40% Similarity=0.757 Sum_probs=75.7
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
||||+++.++..+.+. ..+++.+||++|++++...++.++++++++++|||.+++++|+.
T Consensus 12 ~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~ 91 (163)
T cd01860 12 VGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEK 91 (163)
T ss_pred CCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHH
Confidence 7999999988887654 45789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
++.|++.+.....+.+|+++++|
T Consensus 92 ~~~~~~~~~~~~~~~~~iivv~n 114 (163)
T cd01860 92 AKSWVKELQRNASPNIIIALVGN 114 (163)
T ss_pred HHHHHHHHHHhCCCCCeEEEEEE
Confidence 99999999887667899999987
No 90
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.87 E-value=4e-22 Score=113.85 Aligned_cols=83 Identities=29% Similarity=0.512 Sum_probs=74.7
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 61 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~ 61 (83)
+||||++.++..+.|. ..+.+++|||+|+++|..+++.+++.++++++|||++++++|+.+
T Consensus 12 ~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~ 91 (168)
T cd04177 12 VGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNEL 91 (168)
T ss_pred CCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHHHHHHH
Confidence 7999999998877774 347889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc-CCCceEEEEeC
Q psy16649 62 KNWIRNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 62 ~~w~~~~~~~~-~~~~piilvgN 83 (83)
..|.+.+.+.. ..+.|++++||
T Consensus 92 ~~~~~~i~~~~~~~~~piiiv~n 114 (168)
T cd04177 92 GELREQVLRIKDSDNVPMVLVGN 114 (168)
T ss_pred HHHHHHHHHhhCCCCCCEEEEEE
Confidence 99999997743 36899999997
No 91
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.87 E-value=3.7e-22 Score=114.20 Aligned_cols=82 Identities=24% Similarity=0.510 Sum_probs=73.7
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 61 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~ 61 (83)
+|||||+.++..+.|. ..+.+++|||+|+++|..+++.++++++++++|||+++++||+++
T Consensus 11 ~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~ 90 (174)
T cd04135 11 VGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNV 90 (174)
T ss_pred CCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEECCCHHHHHHH
Confidence 7999999998877764 457789999999999999999999999999999999999999999
Q ss_pred H-HHHHHHHHhcCCCceEEEEeC
Q psy16649 62 K-NWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 62 ~-~w~~~~~~~~~~~~piilvgN 83 (83)
. .|++.++.. .++.|+++|||
T Consensus 91 ~~~~~~~l~~~-~~~~piivv~n 112 (174)
T cd04135 91 KEEWVPELKEY-APNVPYLLVGT 112 (174)
T ss_pred HHHHHHHHHhh-CCCCCEEEEeE
Confidence 6 799888766 47899999997
No 92
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.87 E-value=4.4e-22 Score=113.23 Aligned_cols=83 Identities=29% Similarity=0.412 Sum_probs=71.1
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhh-hcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERF-RTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~-~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+|||||+.++..+.|. ..+++++||++|++++ ......+++++|++++|||+++++||+.
T Consensus 10 ~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~ 89 (165)
T cd04146 10 VGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDE 89 (165)
T ss_pred CcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHH
Confidence 7999999998765543 4578999999999863 4567889999999999999999999999
Q ss_pred HHHHHHHHHHhc--CCCceEEEEeC
Q psy16649 61 IKNWIRNIEENA--SANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~--~~~~piilvgN 83 (83)
++.|++.+.+.. ..++|+++|||
T Consensus 90 ~~~~~~~~~~~~~~~~~~piilv~n 114 (165)
T cd04146 90 ISQLKQLIREIKKRDREIPVILVGN 114 (165)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 999999988754 35899999997
No 93
>PTZ00099 rab6; Provisional
Probab=99.87 E-value=2.2e-21 Score=112.19 Aligned_cols=67 Identities=40% Similarity=0.722 Sum_probs=63.2
Q ss_pred eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
..++++||||+|+++++.+++.|+++||++|+|||+++++||+++..|++++.+..++++|++||||
T Consensus 27 ~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgN 93 (176)
T PTZ00099 27 GPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGN 93 (176)
T ss_pred EEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEE
Confidence 6799999999999999999999999999999999999999999999999999876657899999998
No 94
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.87 E-value=3.4e-22 Score=115.89 Aligned_cols=83 Identities=16% Similarity=0.363 Sum_probs=72.0
Q ss_pred CCcceeeeeeccCccc---------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ---------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWI 65 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~---------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~ 65 (83)
+||||++.++..+.|. ..+.+++|||+|+++++.+++.|++++|++|+|||++++++|+++..|+
T Consensus 28 vGKTsli~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l 107 (182)
T PTZ00133 28 AGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREEL 107 (182)
T ss_pred CCHHHHHHHHhcCCccccCCccccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHH
Confidence 7999999999877664 3478999999999999999999999999999999999999999998877
Q ss_pred HHHHHh-cCCCceEEEEeC
Q psy16649 66 RNIEEN-ASANVEKMLLGN 83 (83)
Q Consensus 66 ~~~~~~-~~~~~piilvgN 83 (83)
.++... ...++|++||||
T Consensus 108 ~~~~~~~~~~~~piilv~N 126 (182)
T PTZ00133 108 ERMLSEDELRDAVLLVFAN 126 (182)
T ss_pred HHHHhCHhhcCCCEEEEEe
Confidence 776432 225789999998
No 95
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.87 E-value=3.5e-22 Score=114.36 Aligned_cols=83 Identities=13% Similarity=0.316 Sum_probs=73.5
Q ss_pred CCcceeeeeeccCccc---------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ---------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWI 65 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~---------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~ 65 (83)
|||||++.++..+.+. ..+.+++|||+|+++++.++..++++++++++|||++++++|+++..|+
T Consensus 10 ~GKTsl~~~l~~~~~~~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~ 89 (169)
T cd04158 10 AGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSEL 89 (169)
T ss_pred CCHHHHHHHHhcCCCCCcCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHH
Confidence 7999999999887664 3478899999999999999999999999999999999999999999999
Q ss_pred HHHHHhc-CCCceEEEEeC
Q psy16649 66 RNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 66 ~~~~~~~-~~~~piilvgN 83 (83)
.++.+.. ..+.|++||||
T Consensus 90 ~~~~~~~~~~~~piilv~N 108 (169)
T cd04158 90 AKLLTEKELRDALLLIFAN 108 (169)
T ss_pred HHHhcChhhCCCCEEEEEe
Confidence 8887543 25689999998
No 96
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.87 E-value=4.2e-22 Score=113.96 Aligned_cols=82 Identities=20% Similarity=0.396 Sum_probs=72.7
Q ss_pred CCcceeeeeeccCccc----------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ----------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNW 64 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~----------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w 64 (83)
||||||+.++..+ +. ..+++++||++|+++++.++..|+++++++++|||.+++++|++++.|
T Consensus 10 ~GKTsl~~~l~~~-~~~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~ 88 (167)
T cd04161 10 AGKTTLVSALQGE-IPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEI 88 (167)
T ss_pred CCHHHHHHHHhCC-CCccccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHH
Confidence 7999999998755 43 357899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcC-CCceEEEEeC
Q psy16649 65 IRNIEENAS-ANVEKMLLGN 83 (83)
Q Consensus 65 ~~~~~~~~~-~~~piilvgN 83 (83)
+..+.+... .++|++||||
T Consensus 89 l~~l~~~~~~~~~piliv~N 108 (167)
T cd04161 89 LRELLQHPRVSGKPILVLAN 108 (167)
T ss_pred HHHHHcCccccCCcEEEEEe
Confidence 998876432 5799999998
No 97
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.87 E-value=1.1e-21 Score=110.64 Aligned_cols=83 Identities=35% Similarity=0.695 Sum_probs=75.1
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+||||++.++..+.+. ..+.+.+||++|++.+..+++.++++++++++|||++++++++.
T Consensus 11 ~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~ 90 (162)
T cd04123 11 VGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQK 90 (162)
T ss_pred CCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHHHHH
Confidence 7999999988877654 45679999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
+..|++++....+.++|+++|||
T Consensus 91 ~~~~~~~i~~~~~~~~piiiv~n 113 (162)
T cd04123 91 VKKWIKELKQMRGNNISLVIVGN 113 (162)
T ss_pred HHHHHHHHHHhCCCCCeEEEEEE
Confidence 99999999887666899999987
No 98
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.87 E-value=9e-22 Score=112.26 Aligned_cols=82 Identities=23% Similarity=0.362 Sum_probs=73.3
Q ss_pred CCcceeeeeeccCccc------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIK 62 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~ 62 (83)
+|||||+.++..+.|. ..+++++|||+|++++...+..+++.++++++|||+++++||+.+.
T Consensus 11 vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~ 90 (166)
T cd01893 11 VGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIR 90 (166)
T ss_pred CCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHHHHHHH
Confidence 7999999999888874 4578899999999999888888899999999999999999999986
Q ss_pred -HHHHHHHHhcCCCceEEEEeC
Q psy16649 63 -NWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 63 -~w~~~~~~~~~~~~piilvgN 83 (83)
.|++.++... +++|+++|||
T Consensus 91 ~~~~~~i~~~~-~~~pviiv~n 111 (166)
T cd01893 91 TKWLPLIRRLG-VKVPIILVGN 111 (166)
T ss_pred HHHHHHHHHhC-CCCCEEEEEE
Confidence 7988888765 5899999998
No 99
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.86 E-value=2.1e-21 Score=113.95 Aligned_cols=83 Identities=22% Similarity=0.325 Sum_probs=69.4
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhc--------chhhhccCCcEEEEEEEC
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRT--------ITTAYYRGAMGIMLVYDI 52 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~--------~~~~~~~~~~~~ilv~d~ 52 (83)
+|||||+.++..+.|. ..+.+++|||+|.+++.. ....+++.+|++++|||+
T Consensus 11 vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~ 90 (198)
T cd04142 11 VGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDI 90 (198)
T ss_pred CcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEEC
Confidence 6999999999988775 347889999999765422 234568899999999999
Q ss_pred CChhHHHHHHHHHHHHHHhc---CCCceEEEEeC
Q psy16649 53 TNEKSFDNIKNWIRNIEENA---SANVEKMLLGN 83 (83)
Q Consensus 53 ~~~~s~~~~~~w~~~~~~~~---~~~~piilvgN 83 (83)
++++||+.++.|++++.+.. .+++|+++|||
T Consensus 91 ~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgN 124 (198)
T cd04142 91 CSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGN 124 (198)
T ss_pred CCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEE
Confidence 99999999999999987754 46899999998
No 100
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.86 E-value=3.1e-21 Score=112.96 Aligned_cols=83 Identities=19% Similarity=0.348 Sum_probs=74.6
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 61 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~ 61 (83)
+||||++.++..+.+. ..+++++||++|+++|..++..+++++|++++|||++++++|+.+
T Consensus 10 vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~ 89 (198)
T cd04147 10 VGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPESFEEV 89 (198)
T ss_pred CCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHHHHHHH
Confidence 6999999998877654 347899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcC-CCceEEEEeC
Q psy16649 62 KNWIRNIEENAS-ANVEKMLLGN 83 (83)
Q Consensus 62 ~~w~~~~~~~~~-~~~piilvgN 83 (83)
..|+..+.+... .++|+++|+|
T Consensus 90 ~~~~~~i~~~~~~~~~piilv~N 112 (198)
T cd04147 90 ERLREEILEVKEDKFVPIVVVGN 112 (198)
T ss_pred HHHHHHHHHhcCCCCCcEEEEEE
Confidence 999999887653 5799999997
No 101
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.86 E-value=4e-21 Score=108.65 Aligned_cols=83 Identities=41% Similarity=0.810 Sum_probs=74.5
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
|||||++.++..+.+. ..+.+++||++|++++..++..+++++|++++|||+++++||+.
T Consensus 11 ~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~ 90 (161)
T cd01863 11 VGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTN 90 (161)
T ss_pred CCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHh
Confidence 7999999988876553 35789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc-CCCceEEEEeC
Q psy16649 61 IKNWIRNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~-~~~~piilvgN 83 (83)
+..|++.+.+.. ..++|+++|||
T Consensus 91 ~~~~~~~i~~~~~~~~~~~~iv~n 114 (161)
T cd01863 91 LETWLNELETYSTNNDIVKMLVGN 114 (161)
T ss_pred HHHHHHHHHHhCCCCCCcEEEEEE
Confidence 999999998865 46899999997
No 102
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.85 E-value=2.9e-21 Score=114.21 Aligned_cols=82 Identities=29% Similarity=0.564 Sum_probs=74.6
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
|||||++.++..+.+. ..+.+++|||+|++++..++..++++++++++|||+++++||..
T Consensus 20 ~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~ 99 (215)
T PTZ00132 20 VGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKN 99 (215)
T ss_pred CCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHH
Confidence 7999999988776654 56899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
+..|+.++.+.. +++|++++||
T Consensus 100 ~~~~~~~i~~~~-~~~~i~lv~n 121 (215)
T PTZ00132 100 VPNWHRDIVRVC-ENIPIVLVGN 121 (215)
T ss_pred HHHHHHHHHHhC-CCCCEEEEEE
Confidence 999999998765 6799999997
No 103
>PLN03118 Rab family protein; Provisional
Probab=99.85 E-value=3.6e-21 Score=113.63 Aligned_cols=83 Identities=39% Similarity=0.740 Sum_probs=71.2
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 61 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~ 61 (83)
+|||||+.++..+.+. ..+.+++|||+|+++|..++..++++++++++|||+++++||+++
T Consensus 25 vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~ 104 (211)
T PLN03118 25 VGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNL 104 (211)
T ss_pred CCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHH
Confidence 6999999888765543 457889999999999999999999999999999999999999999
Q ss_pred HH-HHHHHHHhc-CCCceEEEEeC
Q psy16649 62 KN-WIRNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 62 ~~-w~~~~~~~~-~~~~piilvgN 83 (83)
.. |...+.... ..+.|+++|||
T Consensus 105 ~~~~~~~~~~~~~~~~~~~ilv~N 128 (211)
T PLN03118 105 SDVWGKEVELYSTNQDCVKMLVGN 128 (211)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEE
Confidence 75 777776544 35689999997
No 104
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.85 E-value=5.9e-21 Score=108.70 Aligned_cols=83 Identities=42% Similarity=0.741 Sum_probs=73.6
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
|||||++.++..+.+. ..+.+.+||++|+++|...+..+++.++++++|||++++++|+.
T Consensus 18 ~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~ 97 (169)
T cd04114 18 VGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRC 97 (169)
T ss_pred CCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHH
Confidence 7999999998644432 45789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
+..|+++++.....++|+++|||
T Consensus 98 ~~~~~~~l~~~~~~~~~~i~v~N 120 (169)
T cd04114 98 LPEWLREIEQYANNKVITILVGN 120 (169)
T ss_pred HHHHHHHHHHhCCCCCeEEEEEE
Confidence 99999999887666899999997
No 105
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.85 E-value=2.2e-21 Score=111.22 Aligned_cols=81 Identities=16% Similarity=0.163 Sum_probs=72.0
Q ss_pred CCcceeeeeeccCccc---------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHH
Q psy16649 1 SGENLCTLQIFRGCFQ---------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFD 59 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~---------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~ 59 (83)
+||||++.+|..+.|. ..+.+++||++|++++..+++.|++++|++++|||+++++||+
T Consensus 15 vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~ 94 (169)
T cd01892 15 SGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVACLVYDSSDPKSFS 94 (169)
T ss_pred CcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEEEEEeCCCHHHHH
Confidence 7999999999988763 3467899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 60 NIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 60 ~~~~w~~~~~~~~~~~~piilvgN 83 (83)
.+..|++++... .++|+++|||
T Consensus 95 ~~~~~~~~~~~~--~~~p~iiv~N 116 (169)
T cd01892 95 YCAEVYKKYFML--GEIPCLFVAA 116 (169)
T ss_pred HHHHHHHHhccC--CCCeEEEEEE
Confidence 999999876432 4799999998
No 106
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.85 E-value=3.7e-21 Score=113.57 Aligned_cols=83 Identities=36% Similarity=0.637 Sum_probs=74.8
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCC-hhHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITN-EKSFD 59 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~-~~s~~ 59 (83)
+||||++.++..+.|. ..+++++|||+||++|+.+++.|++++++++++||.++ ..+++
T Consensus 16 ~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~ 95 (219)
T COG1100 16 VGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDE 95 (219)
T ss_pred ccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccchhhhH
Confidence 7999999999998887 25679999999999999999999999999999999999 55566
Q ss_pred HHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 60 NIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 60 ~~~~w~~~~~~~~~~~~piilvgN 83 (83)
..+.|.+++....+...|+++|||
T Consensus 96 ~~~~~~~~l~~~~~~~~~iilv~n 119 (219)
T COG1100 96 LTEEWLEELRELAPDDVPILLVGN 119 (219)
T ss_pred HHHHHHHHHHHhCCCCceEEEEec
Confidence 667999999988766899999997
No 107
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.85 E-value=3.6e-21 Score=108.75 Aligned_cols=83 Identities=20% Similarity=0.320 Sum_probs=72.4
Q ss_pred CCcceeeeeeccCcc-c----------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHH
Q psy16649 1 SGENLCTLQIFRGCF-Q----------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKN 63 (83)
Q Consensus 1 ~GKss~~~~~~~~~~-~----------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~ 63 (83)
+||||++.++..+.+ . ..+++++|||+|++++..++..++++++++++|+|.+++.+|..+..
T Consensus 10 ~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~ 89 (162)
T cd04157 10 SGKTTIINQLKPENAQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKD 89 (162)
T ss_pred CCHHHHHHHHcccCCCcceecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHH
Confidence 799999999988653 2 34678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc---CCCceEEEEeC
Q psy16649 64 WIRNIEENA---SANVEKMLLGN 83 (83)
Q Consensus 64 w~~~~~~~~---~~~~piilvgN 83 (83)
|++++.+.. ..++|+++|||
T Consensus 90 ~~~~~~~~~~~~~~~~p~iiv~N 112 (162)
T cd04157 90 ELELLLNHPDIKHRRVPILFFAN 112 (162)
T ss_pred HHHHHHcCcccccCCCCEEEEEe
Confidence 988886532 35799999998
No 108
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.85 E-value=8.6e-21 Score=108.10 Aligned_cols=83 Identities=39% Similarity=0.594 Sum_probs=72.8
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
|||||++.++..+.+. ..+.+++||++|++.+..++..++++++++|++||++++++|++
T Consensus 11 ~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~ 90 (172)
T cd01862 11 VGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFES 90 (172)
T ss_pred CCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHHHHH
Confidence 7999999998776543 45778899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcC----CCceEEEEeC
Q psy16649 61 IKNWIRNIEENAS----ANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~----~~~piilvgN 83 (83)
+..|.+++..... .++|+++|||
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~p~ilv~n 117 (172)
T cd01862 91 LDSWRDEFLIQASPSDPENFPFVVLGN 117 (172)
T ss_pred HHHHHHHHHHhcCccCCCCceEEEEEE
Confidence 9999988766542 3799999997
No 109
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.85 E-value=5.3e-21 Score=110.83 Aligned_cols=83 Identities=22% Similarity=0.384 Sum_probs=72.6
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
|||||++.++..+.|. ..+.+++|||+|+++++.+++.++++++++++|||.+++++++.
T Consensus 14 ~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~ 93 (183)
T cd04152 14 AGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEE 93 (183)
T ss_pred CCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHH
Confidence 7999999998776543 23679999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc-CCCceEEEEeC
Q psy16649 61 IKNWIRNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~-~~~~piilvgN 83 (83)
+..|+.++.+.. ..+.|+++|+|
T Consensus 94 ~~~~~~~i~~~~~~~~~p~iiv~N 117 (183)
T cd04152 94 AKTELHKITRFSENQGVPVLVLAN 117 (183)
T ss_pred HHHHHHHHHhhhhcCCCcEEEEEE
Confidence 999998887643 25799999987
No 110
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.84 E-value=8.6e-21 Score=110.21 Aligned_cols=82 Identities=24% Similarity=0.459 Sum_probs=72.8
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 61 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~ 61 (83)
+||||++.++..+.|. ..+.+.+||++|++++...++.+++++++++++||+++++||+++
T Consensus 12 ~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s~~~~ 91 (187)
T cd04129 12 CGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPDSLENV 91 (187)
T ss_pred CCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEECCCHHHHHHH
Confidence 7999999999866654 346789999999999998888899999999999999999999999
Q ss_pred H-HHHHHHHHhcCCCceEEEEeC
Q psy16649 62 K-NWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 62 ~-~w~~~~~~~~~~~~piilvgN 83 (83)
. .|++.++... +++|+++|||
T Consensus 92 ~~~~~~~i~~~~-~~~piilvgn 113 (187)
T cd04129 92 RTKWIEEVRRYC-PNVPVILVGL 113 (187)
T ss_pred HHHHHHHHHHhC-CCCCEEEEee
Confidence 7 6999998766 5799999998
No 111
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.84 E-value=6.3e-21 Score=103.47 Aligned_cols=82 Identities=26% Similarity=0.559 Sum_probs=68.0
Q ss_pred CCcceeeeeeccCccc----------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHH
Q psy16649 1 SGENLCTLQIFRGCFQ----------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSF 58 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~----------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~ 58 (83)
||||||+.++..+.+. ....+++||++|++.+...+...+.++|++++|||+++++||
T Consensus 10 ~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s~ 89 (119)
T PF08477_consen 10 VGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPESL 89 (119)
T ss_dssp SSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHHHH
T ss_pred CCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEEEcCCChHHH
Confidence 7999999998876654 333589999999999998888889999999999999999999
Q ss_pred HHHHH---HHHHHHHhcCCCceEEEEeC
Q psy16649 59 DNIKN---WIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 59 ~~~~~---w~~~~~~~~~~~~piilvgN 83 (83)
+.+.+ |+..++... .++|++||||
T Consensus 90 ~~~~~~~~~l~~~~~~~-~~~piilv~n 116 (119)
T PF08477_consen 90 EYLSQLLKWLKNIRKRD-KNIPIILVGN 116 (119)
T ss_dssp HHHHHHHHHHHHHHHHS-SCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHccC-CCCCEEEEEe
Confidence 99865 455555544 5699999997
No 112
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.84 E-value=8.2e-21 Score=108.91 Aligned_cols=83 Identities=17% Similarity=0.349 Sum_probs=71.6
Q ss_pred CCcceeeeeeccCccc---------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ---------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWI 65 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~---------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~ 65 (83)
+||||++.++..+.+. ..+.+++|||+|+++++.++..++++++++++|||.+++++|+++..|+
T Consensus 25 ~GKTsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~ 104 (173)
T cd04154 25 AGKTTILKKLLGEDIDTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKREL 104 (173)
T ss_pred CCHHHHHHHHccCCCCCcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHH
Confidence 7999999998766443 3467899999999999999999999999999999999999999999888
Q ss_pred HHHHHh-cCCCceEEEEeC
Q psy16649 66 RNIEEN-ASANVEKMLLGN 83 (83)
Q Consensus 66 ~~~~~~-~~~~~piilvgN 83 (83)
.++... ...++|+++|||
T Consensus 105 ~~~~~~~~~~~~p~iiv~n 123 (173)
T cd04154 105 KELLQEERLAGATLLILAN 123 (173)
T ss_pred HHHHhChhhcCCCEEEEEE
Confidence 887543 236899999997
No 113
>KOG4252|consensus
Probab=99.84 E-value=2.4e-22 Score=115.46 Aligned_cols=82 Identities=30% Similarity=0.577 Sum_probs=75.5
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
.||||++.||..|.|. +.+.+++|||+|||.|..+...||++|.+.++||+-+|+.||+.
T Consensus 31 VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea 110 (246)
T KOG4252|consen 31 VGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEA 110 (246)
T ss_pred cchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEEEEecccHHHHHH
Confidence 5999999999988887 44566779999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
+..|.+++.... ..+|.++|-|
T Consensus 111 ~~~w~~kv~~e~-~~IPtV~vqN 132 (246)
T KOG4252|consen 111 TLEWYNKVQKET-ERIPTVFVQN 132 (246)
T ss_pred HHHHHHHHHHHh-ccCCeEEeec
Confidence 999999999887 6899999876
No 114
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.83 E-value=1.3e-20 Score=108.33 Aligned_cols=83 Identities=22% Similarity=0.312 Sum_probs=72.2
Q ss_pred CCcceeeeeeccCccc---------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ---------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWI 65 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~---------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~ 65 (83)
+||||++.++..+.+. ..+++.+||++|++++...+..++++++++++|+|.+++++|..+..|+
T Consensus 26 ~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l 105 (174)
T cd04153 26 AGKTTILYQFLLGEVVHTSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEEL 105 (174)
T ss_pred CCHHHHHHHHccCCCCCcCCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHH
Confidence 7999999999877664 3478999999999999999999999999999999999999999998877
Q ss_pred HHHHHhc-CCCceEEEEeC
Q psy16649 66 RNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 66 ~~~~~~~-~~~~piilvgN 83 (83)
.++.+.. ..++|+++++|
T Consensus 106 ~~~~~~~~~~~~p~viv~N 124 (174)
T cd04153 106 YKMLAHEDLRKAVLLVLAN 124 (174)
T ss_pred HHHHhchhhcCCCEEEEEE
Confidence 7775433 25799999987
No 115
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.83 E-value=2e-20 Score=106.47 Aligned_cols=82 Identities=26% Similarity=0.519 Sum_probs=73.1
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 61 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~ 61 (83)
|||||++.++..+.+. ..+++++||++|++++...++.+++.+|++++|||+++++||..+
T Consensus 11 ~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~ 90 (171)
T cd00157 11 VGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSSFENV 90 (171)
T ss_pred CCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEECCCHHHHHHH
Confidence 7999999999988762 467899999999999999999999999999999999999999987
Q ss_pred H-HHHHHHHHhcCCCceEEEEeC
Q psy16649 62 K-NWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 62 ~-~w~~~~~~~~~~~~piilvgN 83 (83)
. .|+..+.... ++.|+++|||
T Consensus 91 ~~~~~~~~~~~~-~~~p~ivv~n 112 (171)
T cd00157 91 KTKWIPEIRHYC-PNVPIILVGT 112 (171)
T ss_pred HHHHHHHHHhhC-CCCCEEEEEc
Confidence 5 6888888766 5899999997
No 116
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.83 E-value=1.6e-20 Score=106.10 Aligned_cols=83 Identities=23% Similarity=0.396 Sum_probs=73.0
Q ss_pred CCcceeeeeeccCccc----------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ----------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNW 64 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~----------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w 64 (83)
|||||++.++..+.+. ..+.+.+||++|++++..++..++++++++++|+|.+++++|..+..|
T Consensus 10 ~GKTsl~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~ 89 (160)
T cd04156 10 AGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKE 89 (160)
T ss_pred CCHHHHHHHHhcCCcccccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHH
Confidence 7999999999887663 357899999999999999999999999999999999999999999998
Q ss_pred HHHHHHhc-CCCceEEEEeC
Q psy16649 65 IRNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 65 ~~~~~~~~-~~~~piilvgN 83 (83)
+.++.+.. ..+.|+++|+|
T Consensus 90 ~~~~~~~~~~~~~piilv~n 109 (160)
T cd04156 90 LKHILKNEHIKGVPVVLLAN 109 (160)
T ss_pred HHHHHhchhhcCCCEEEEEE
Confidence 88876532 25799999997
No 117
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.82 E-value=5.3e-20 Score=109.55 Aligned_cols=81 Identities=19% Similarity=0.253 Sum_probs=68.5
Q ss_pred CCcceeeeeeccCccc---------------------eEEEEEEEeCCCchhhhcchhhhcc-CCcEEEEEEECCChhHH
Q psy16649 1 SGENLCTLQIFRGCFQ---------------------HNFHINYRDTAGQERFRTITTAYYR-GAMGIMLVYDITNEKSF 58 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~---------------------~~~~l~i~Dt~g~~~~~~~~~~~~~-~~~~~ilv~d~~~~~s~ 58 (83)
+|||||+.++..+.|. ..+.+++|||+|++ ..+...+++ ++|++++|||+++++||
T Consensus 11 vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iilV~d~td~~S~ 88 (221)
T cd04148 11 VGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVVVYSVTDRSSF 88 (221)
T ss_pred CcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEEEEECCCHHHH
Confidence 6999999999766552 45778999999998 334566777 99999999999999999
Q ss_pred HHHHHHHHHHHHhc-CCCceEEEEeC
Q psy16649 59 DNIKNWIRNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 59 ~~~~~w~~~~~~~~-~~~~piilvgN 83 (83)
+++..|++++.+.. ..++|+++|||
T Consensus 89 ~~~~~~~~~l~~~~~~~~~piilV~N 114 (221)
T cd04148 89 ERASELRIQLRRNRQLEDRPIILVGN 114 (221)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 99999999998764 36899999998
No 118
>KOG0070|consensus
Probab=99.82 E-value=1.2e-19 Score=104.16 Aligned_cols=83 Identities=18% Similarity=0.379 Sum_probs=73.6
Q ss_pred CCcceeeeeeccCccc---------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ---------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWI 65 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~---------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~ 65 (83)
+||||+++++..+++. +++++++||.+||++++.+|+.||++++++|+|.|.+|++.+.+++.-+
T Consensus 28 AGKTTILykLk~~E~vttvPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL 107 (181)
T KOG0070|consen 28 AGKTTILYKLKLGEIVTTVPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEEL 107 (181)
T ss_pred CCceeeeEeeccCCcccCCCccccceeEEEEcceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHH
Confidence 7999999999988876 7889999999999999999999999999999999999999999988655
Q ss_pred HHHHHhc-CCCceEEEEeC
Q psy16649 66 RNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 66 ~~~~~~~-~~~~piilvgN 83 (83)
..+.... ..++|+++.||
T Consensus 108 ~~~l~~~~l~~~~llv~aN 126 (181)
T KOG0070|consen 108 HRMLAEPELRNAPLLVFAN 126 (181)
T ss_pred HHHHcCcccCCceEEEEec
Confidence 5554443 36899999987
No 119
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.82 E-value=1e-19 Score=101.76 Aligned_cols=83 Identities=46% Similarity=0.851 Sum_probs=74.7
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+||||++.++..+.+. ..+.+.+||++|++.+...+..++++++++++|+|.+++++++.
T Consensus 11 ~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~ 90 (159)
T cd00154 11 VGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNRESFEN 90 (159)
T ss_pred CCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHH
Confidence 7999999988766654 34788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
+..|+..+.....+..|+++++|
T Consensus 91 ~~~~~~~~~~~~~~~~p~ivv~n 113 (159)
T cd00154 91 LDKWLKELKEYAPENIPIILVGN 113 (159)
T ss_pred HHHHHHHHHHhCCCCCcEEEEEE
Confidence 99999999887667899999987
No 120
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.82 E-value=9.9e-20 Score=102.85 Aligned_cols=83 Identities=34% Similarity=0.524 Sum_probs=74.7
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 61 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~ 61 (83)
+||||++.++..+.|. ..+.+++||++|++++..++..+++.++++++|||+++++||+++
T Consensus 11 ~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~ 90 (164)
T cd04139 11 VGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTAT 90 (164)
T ss_pred CCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHH
Confidence 7999999999876654 457899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc-CCCceEEEEeC
Q psy16649 62 KNWIRNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 62 ~~w~~~~~~~~-~~~~piilvgN 83 (83)
..|...+.+.. ..++|+++|+|
T Consensus 91 ~~~~~~~~~~~~~~~~piiiv~N 113 (164)
T cd04139 91 AEFREQILRVKDDDNVPLLLVGN 113 (164)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEE
Confidence 99999988764 36899999997
No 121
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.82 E-value=7.9e-20 Score=103.39 Aligned_cols=83 Identities=19% Similarity=0.295 Sum_probs=69.1
Q ss_pred CCcceeeeeeccCccc---------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ---------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWI 65 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~---------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~ 65 (83)
+|||+++.++..+.+. ..+++++|||+|+++++.+++.+++.++++++|+|.+++.++.....|+
T Consensus 10 ~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~ 89 (158)
T cd04151 10 AGKTTILYRLQLGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEEL 89 (158)
T ss_pred CCHHHHHHHHccCCCcCcCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHH
Confidence 7999999998665543 3468999999999999999999999999999999999999998877666
Q ss_pred HHHHH-hcCCCceEEEEeC
Q psy16649 66 RNIEE-NASANVEKMLLGN 83 (83)
Q Consensus 66 ~~~~~-~~~~~~piilvgN 83 (83)
..+.+ ....+.|+++|+|
T Consensus 90 ~~~~~~~~~~~~piiiv~n 108 (158)
T cd04151 90 HAMLEEEELKGAVLLVFAN 108 (158)
T ss_pred HHHHhchhhcCCcEEEEEe
Confidence 55433 2225799999997
No 122
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.81 E-value=1.1e-19 Score=102.52 Aligned_cols=83 Identities=19% Similarity=0.381 Sum_probs=73.5
Q ss_pred CCcceeeeeeccCccc---------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ---------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWI 65 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~---------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~ 65 (83)
|||||++.++..+.+. ..+.+.+||++|++++..++..++++++++++|||++++++|..+..|+
T Consensus 10 ~GKssli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~ 89 (158)
T cd00878 10 AGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEEL 89 (158)
T ss_pred CCHHHHHHHHhcCCCCCCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHH
Confidence 7999999999887654 3478999999999999999999999999999999999999999999988
Q ss_pred HHHHHhc-CCCceEEEEeC
Q psy16649 66 RNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 66 ~~~~~~~-~~~~piilvgN 83 (83)
..+.... ..+.|+++++|
T Consensus 90 ~~~~~~~~~~~~piiiv~n 108 (158)
T cd00878 90 HKLLNEEELKGVPLLIFAN 108 (158)
T ss_pred HHHHhCcccCCCcEEEEee
Confidence 8876643 36899999997
No 123
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.81 E-value=1e-19 Score=105.57 Aligned_cols=83 Identities=19% Similarity=0.310 Sum_probs=71.8
Q ss_pred CCcceeeeeeccCccc---------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ---------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWI 65 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~---------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~ 65 (83)
+||||++.++..+.+. ..+++.+||++|+++++.++..|+++++++++|+|.+++++|+....|+
T Consensus 28 ~GKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l 107 (184)
T smart00178 28 AGKTTLLHMLKNDRLAQHQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKREL 107 (184)
T ss_pred CCHHHHHHHHhcCCCcccCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHH
Confidence 7999999999876542 3468899999999999999999999999999999999999999999888
Q ss_pred HHHHHhc-CCCceEEEEeC
Q psy16649 66 RNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 66 ~~~~~~~-~~~~piilvgN 83 (83)
.++.+.. ..+.|+++|+|
T Consensus 108 ~~l~~~~~~~~~piliv~N 126 (184)
T smart00178 108 DALLSDEELATVPFLILGN 126 (184)
T ss_pred HHHHcChhhcCCCEEEEEe
Confidence 8775432 25789999997
No 124
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.81 E-value=2.1e-19 Score=101.03 Aligned_cols=83 Identities=34% Similarity=0.625 Sum_probs=74.3
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 61 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~ 61 (83)
|||||++.++..+.+. ..+.+++||++|++.+..++..+++.++++++|||++++++++++
T Consensus 10 ~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~ 89 (160)
T cd00876 10 VGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRESFEEI 89 (160)
T ss_pred CCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHH
Confidence 7999999998766543 367899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcC-CCceEEEEeC
Q psy16649 62 KNWIRNIEENAS-ANVEKMLLGN 83 (83)
Q Consensus 62 ~~w~~~~~~~~~-~~~piilvgN 83 (83)
..|...+....+ ..+|+++|||
T Consensus 90 ~~~~~~~~~~~~~~~~p~ivv~n 112 (160)
T cd00876 90 KGYREQILRVKDDEDIPIVLVGN 112 (160)
T ss_pred HHHHHHHHHhcCCCCCcEEEEEE
Confidence 999998887664 5899999997
No 125
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.80 E-value=2.6e-19 Score=103.01 Aligned_cols=83 Identities=33% Similarity=0.570 Sum_probs=73.5
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 61 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~ 61 (83)
+||||++.++..+.+. ..+.+++||++|+++++.++..++..+++++++||+++.++|+.+
T Consensus 12 ~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~ 91 (180)
T cd04137 12 VGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVV 91 (180)
T ss_pred CCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHH
Confidence 7999999999877664 346789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc-CCCceEEEEeC
Q psy16649 62 KNWIRNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 62 ~~w~~~~~~~~-~~~~piilvgN 83 (83)
+.|+..+.+.. ..+.|+++|+|
T Consensus 92 ~~~~~~~~~~~~~~~~p~ilv~N 114 (180)
T cd04137 92 KVIYDKILDMLGKESVPIVLVGN 114 (180)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEE
Confidence 99988887654 35789999997
No 126
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.79 E-value=4.5e-19 Score=102.83 Aligned_cols=83 Identities=22% Similarity=0.350 Sum_probs=71.6
Q ss_pred CCcceeeeeeccCccc---------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ---------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWI 65 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~---------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~ 65 (83)
|||||++.++..+.+. ..+.+++||++|++++..++..++++++++++|+|++++++|+....|+
T Consensus 30 ~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~ 109 (190)
T cd00879 30 AGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEEL 109 (190)
T ss_pred CCHHHHHHHHhcCCCcccCCccCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHH
Confidence 7999999998875432 3467899999999999999999999999999999999999999998888
Q ss_pred HHHHHhc-CCCceEEEEeC
Q psy16649 66 RNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 66 ~~~~~~~-~~~~piilvgN 83 (83)
.++.+.. ..+.|++++||
T Consensus 110 ~~i~~~~~~~~~pvivv~N 128 (190)
T cd00879 110 DSLLSDEELANVPFLILGN 128 (190)
T ss_pred HHHHcCccccCCCEEEEEe
Confidence 8886543 25699999998
No 127
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.78 E-value=5.6e-19 Score=100.36 Aligned_cols=83 Identities=24% Similarity=0.368 Sum_probs=70.1
Q ss_pred CCcceeeeeeccCcc------c----------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHH
Q psy16649 1 SGENLCTLQIFRGCF------Q----------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSF 58 (83)
Q Consensus 1 ~GKss~~~~~~~~~~------~----------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~ 58 (83)
||||||+.++..... . ....+++|||+|++.+..++..++++++++++|+|.++++++
T Consensus 10 ~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~ 89 (167)
T cd04160 10 AGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRERF 89 (167)
T ss_pred CCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECchHHHH
Confidence 799999998753211 0 347899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc-CCCceEEEEeC
Q psy16649 59 DNIKNWIRNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 59 ~~~~~w~~~~~~~~-~~~~piilvgN 83 (83)
+.+..|+..+.+.. ..++|+++++|
T Consensus 90 ~~~~~~~~~~~~~~~~~~~p~ilv~N 115 (167)
T cd04160 90 EESKSALEKVLRNEALEGVPLLILAN 115 (167)
T ss_pred HHHHHHHHHHHhChhhcCCCEEEEEE
Confidence 99999988876643 36799999987
No 128
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.78 E-value=8.1e-19 Score=98.19 Aligned_cols=83 Identities=29% Similarity=0.462 Sum_probs=71.4
Q ss_pred CCcceeeeeeccCccc----------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ----------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNW 64 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~----------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w 64 (83)
|||||++.++..+.|. ..+.+.+||++|+++++.++..+++.++++++|+|+++++++.....|
T Consensus 10 ~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~ 89 (159)
T cd04159 10 SGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNE 89 (159)
T ss_pred CCHHHHHHHHccCCCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHH
Confidence 7999999999887544 237799999999999999999999999999999999999999998888
Q ss_pred HHHHHHhc-CCCceEEEEeC
Q psy16649 65 IRNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 65 ~~~~~~~~-~~~~piilvgN 83 (83)
+.++.... ..+.|+++|+|
T Consensus 90 ~~~~~~~~~~~~~p~iiv~n 109 (159)
T cd04159 90 LHDLLEKPSLEGIPLLVLGN 109 (159)
T ss_pred HHHHHcChhhcCCCEEEEEe
Confidence 77775432 25789999987
No 129
>KOG0096|consensus
Probab=99.77 E-value=5.1e-19 Score=102.18 Aligned_cols=82 Identities=26% Similarity=0.505 Sum_probs=77.7
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+|||++..+...+.|. ..+++..|||+|||.+..++.-||-++.+.|++||++.+-++.+
T Consensus 21 ~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr~t~~n 100 (216)
T KOG0096|consen 21 TGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYKN 100 (216)
T ss_pred ccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEEEeeeeehhhhhc
Confidence 5999999999999998 56899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
+.+|.+++.+.+ .++||+++||
T Consensus 101 ~~rwhrd~~rv~-~NiPiv~cGN 122 (216)
T KOG0096|consen 101 VPRWHRDLVRVR-ENIPIVLCGN 122 (216)
T ss_pred chHHHHHHHHHh-cCCCeeeecc
Confidence 999999999988 5799999998
No 130
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.77 E-value=1.1e-18 Score=100.78 Aligned_cols=83 Identities=22% Similarity=0.446 Sum_probs=72.3
Q ss_pred CCcceeeeeeccCccc---------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ---------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWI 65 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~---------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~ 65 (83)
|||||+++++..+.+. ..+++.+||.+|++.++.+|+.|+++++++|+|.|.++++.+.+....+
T Consensus 25 sGKTtll~~l~~~~~~~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L 104 (175)
T PF00025_consen 25 SGKTTLLNRLKNGEISETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEEL 104 (175)
T ss_dssp SSHHHHHHHHHSSSEEEEEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHH
T ss_pred cchHHHHHHhhhccccccCcccccccceeeeCcEEEEEEeccccccccccceeeccccceeEEEEecccceeecccccch
Confidence 7999999999877654 4568999999999999999999999999999999999999999998877
Q ss_pred HHHHHhc-CCCceEEEEeC
Q psy16649 66 RNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 66 ~~~~~~~-~~~~piilvgN 83 (83)
.++.... -.++|+++++|
T Consensus 105 ~~ll~~~~~~~~piLIl~N 123 (175)
T PF00025_consen 105 KELLNDPELKDIPILILAN 123 (175)
T ss_dssp HHHHTSGGGTTSEEEEEEE
T ss_pred hhhcchhhcccceEEEEec
Confidence 7775532 25799999987
No 131
>KOG0075|consensus
Probab=99.76 E-value=6.2e-18 Score=94.59 Aligned_cols=83 Identities=27% Similarity=0.458 Sum_probs=72.7
Q ss_pred CCcceeeeeeccCccc----------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ----------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNW 64 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~----------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w 64 (83)
|||||+......+.+. ..+.+.+||.+||.+|+.+|+.|+++++++++|.|..+++.....+.-
T Consensus 31 sGKtt~Vn~ia~g~~~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~E 110 (186)
T KOG0075|consen 31 SGKTTLVNVIARGQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSE 110 (186)
T ss_pred CCcceEEEEEeeccchhhhcccccceeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHH
Confidence 7999999999998776 778999999999999999999999999999999999999998887765
Q ss_pred HHHHHHhc-CCCceEEEEeC
Q psy16649 65 IRNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 65 ~~~~~~~~-~~~~piilvgN 83 (83)
++.+.... -..+|+++.||
T Consensus 111 L~~LL~k~~l~gip~LVLGn 130 (186)
T KOG0075|consen 111 LHDLLDKPSLTGIPLLVLGN 130 (186)
T ss_pred HHHHhcchhhcCCcEEEecc
Confidence 55554433 26899999998
No 132
>KOG1673|consensus
Probab=99.74 E-value=1.1e-17 Score=94.48 Aligned_cols=80 Identities=15% Similarity=0.401 Sum_probs=73.4
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
.||||+...|+.+.+. ..+.+.|||.+|++++..+.+.-.+++-+++++||+++++++++
T Consensus 31 iGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~TLnS 110 (205)
T KOG1673|consen 31 IGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTRRSTLNS 110 (205)
T ss_pred cCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEEEecCchHHHHH
Confidence 4999999999999985 66889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEE
Q psy16649 61 IKNWIRNIEENASANVEKML 80 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piil 80 (83)
+..|+.+.+......+|+++
T Consensus 111 i~~WY~QAr~~NktAiPilv 130 (205)
T KOG1673|consen 111 IKEWYRQARGLNKTAIPILV 130 (205)
T ss_pred HHHHHHHHhccCCccceEEe
Confidence 99999999887766788653
No 133
>KOG0073|consensus
Probab=99.74 E-value=9.9e-18 Score=94.94 Aligned_cols=83 Identities=18% Similarity=0.325 Sum_probs=69.1
Q ss_pred CCcceeeeeeccCccc---------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ---------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWI 65 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~---------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~ 65 (83)
||||++..++....-. +.++|++||.+||...++.|+.||.++||.|.|+|.+++..|++....+
T Consensus 27 sGKTti~~kl~~~~~~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L 106 (185)
T KOG0073|consen 27 SGKTTIVKKLLGEDTDTISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQEL 106 (185)
T ss_pred CCchhHHHHhcCCCccccCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHH
Confidence 7999999998764433 7789999999999999999999999999999999999999999988766
Q ss_pred HHHHH-hcCCCceEEEEeC
Q psy16649 66 RNIEE-NASANVEKMLLGN 83 (83)
Q Consensus 66 ~~~~~-~~~~~~piilvgN 83 (83)
.++.. ..-...|+++++|
T Consensus 107 ~~lL~eerlaG~~~Lvlan 125 (185)
T KOG0073|consen 107 TELLVEERLAGAPLLVLAN 125 (185)
T ss_pred HHHHhhhhhcCCceEEEEe
Confidence 55533 2224578888876
No 134
>KOG0071|consensus
Probab=99.72 E-value=3e-17 Score=91.25 Aligned_cols=83 Identities=22% Similarity=0.420 Sum_probs=69.8
Q ss_pred CCcceeeeeeccCccc---------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ---------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWI 65 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~---------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~ 65 (83)
+|||++++++.-+... +++++++||.+||++.+.+|.+||.++.++|+|.|..+++..++.+.-+
T Consensus 28 aGKTtiLyKLkl~~~~~~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~EL 107 (180)
T KOG0071|consen 28 AGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNEL 107 (180)
T ss_pred CCceehhhHHhcCCCcccccccceeEEEEEeeeeEEeeeeccCchhhhHHHHhhccCCceEEEEEeccchhhHHHHHHHH
Confidence 6999999998777655 8899999999999999999999999999999999999998888887544
Q ss_pred HHHHHhcC-CCceEEEEeC
Q psy16649 66 RNIEENAS-ANVEKMLLGN 83 (83)
Q Consensus 66 ~~~~~~~~-~~~piilvgN 83 (83)
..+..... .++|+++.+|
T Consensus 108 h~ii~~~em~~~~~LvlAN 126 (180)
T KOG0071|consen 108 HRIINDREMRDAIILILAN 126 (180)
T ss_pred HHHhCCHhhhcceEEEEec
Confidence 44433221 5788888887
No 135
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.72 E-value=2.4e-17 Score=97.17 Aligned_cols=83 Identities=16% Similarity=0.321 Sum_probs=69.9
Q ss_pred CCcceeeeeeccCccc---------------e----EEEEEEEeCCCchhhhcchhhhccCC-cEEEEEEECCCh-hHHH
Q psy16649 1 SGENLCTLQIFRGCFQ---------------H----NFHINYRDTAGQERFRTITTAYYRGA-MGIMLVYDITNE-KSFD 59 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~---------------~----~~~l~i~Dt~g~~~~~~~~~~~~~~~-~~~ilv~d~~~~-~s~~ 59 (83)
||||+|+.++..+.+. . ...+.+||++|+++++..+..+++++ +++|+|+|.++. +++.
T Consensus 11 sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~ 90 (203)
T cd04105 11 SGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQKNLK 90 (203)
T ss_pred CCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccchhHHH
Confidence 7999999999887765 1 46689999999999999999999999 999999999998 7888
Q ss_pred HHHHHHHHHHHh---cCCCceEEEEeC
Q psy16649 60 NIKNWIRNIEEN---ASANVEKMLLGN 83 (83)
Q Consensus 60 ~~~~w~~~~~~~---~~~~~piilvgN 83 (83)
.+..|+.++... ..+.+|+++++|
T Consensus 91 ~~~~~l~~il~~~~~~~~~~pvliv~N 117 (203)
T cd04105 91 DVAEFLYDILTDLEKVKNKIPVLIACN 117 (203)
T ss_pred HHHHHHHHHHHHHhhccCCCCEEEEec
Confidence 887776665332 236899999998
No 136
>KOG4423|consensus
Probab=99.71 E-value=1.1e-19 Score=104.88 Aligned_cols=83 Identities=28% Similarity=0.559 Sum_probs=75.2
Q ss_pred CCcceeeeeeccCccc---------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHH
Q psy16649 1 SGENLCTLQIFRGCFQ---------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFD 59 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~---------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~ 59 (83)
+|||++++++.+..|. ..+++++||.+|||++..|...||+.+++..+|||+++.-+|+
T Consensus 36 vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~s~tfe 115 (229)
T KOG4423|consen 36 VGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTFE 115 (229)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEEEEEcccccccc
Confidence 5999999999998887 6689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc----CCCceEEEEeC
Q psy16649 60 NIKNWIRNIEENA----SANVEKMLLGN 83 (83)
Q Consensus 60 ~~~~w~~~~~~~~----~~~~piilvgN 83 (83)
.+.+|.+++.... +.++|+++.+|
T Consensus 116 ~~skwkqdldsk~qLpng~Pv~~vllan 143 (229)
T KOG4423|consen 116 PVSKWKQDLDSKLQLPNGTPVPCVLLAN 143 (229)
T ss_pred HHHHHHHhccCcccCCCCCcchheeccc
Confidence 9999999997743 35788888776
No 137
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.71 E-value=2e-17 Score=94.98 Aligned_cols=62 Identities=21% Similarity=0.302 Sum_probs=52.8
Q ss_pred EEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 18 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
.+.+++|||+|+++|..++..+++++|++|+|||.++..+++.+..|.... ..++|+++|+|
T Consensus 66 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~~~~~iiiv~N 127 (179)
T cd01890 66 EYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----ENNLEIIPVIN 127 (179)
T ss_pred cEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----HcCCCEEEEEE
Confidence 567889999999999999999999999999999999988888777775432 14678999987
No 138
>KOG3883|consensus
Probab=99.68 E-value=8.5e-17 Score=90.64 Aligned_cols=83 Identities=22% Similarity=0.334 Sum_probs=69.6
Q ss_pred CCcceeeeeeccCccc----------------------eEEEEEEEeCCCchhh-hcchhhhccCCcEEEEEEECCChhH
Q psy16649 1 SGENLCTLQIFRGCFQ----------------------HNFHINYRDTAGQERF-RTITTAYYRGAMGIMLVYDITNEKS 57 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~----------------------~~~~l~i~Dt~g~~~~-~~~~~~~~~~~~~~ilv~d~~~~~s 57 (83)
.|||+++.++..++.. -.=.|.++||+|-..+ ..+-.+|+.-+|++++|||..|++|
T Consensus 20 VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~eS 99 (198)
T KOG3883|consen 20 VGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPES 99 (198)
T ss_pred ccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCceEEEEecCCCHHH
Confidence 5999999998887665 2336889999998777 6788999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc-CCCceEEEEeC
Q psy16649 58 FDNIKNWIRNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 58 ~~~~~~w~~~~~~~~-~~~~piilvgN 83 (83)
|+.++..-+++.+.. ...+||+++||
T Consensus 100 f~rv~llKk~Idk~KdKKEvpiVVLaN 126 (198)
T KOG3883|consen 100 FQRVELLKKEIDKHKDKKEVPIVVLAN 126 (198)
T ss_pred HHHHHHHHHHHhhccccccccEEEEec
Confidence 999877766776644 36899999998
No 139
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.68 E-value=2.1e-16 Score=90.27 Aligned_cols=83 Identities=19% Similarity=0.306 Sum_probs=69.8
Q ss_pred CCcceeeeeeccCccc---------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ---------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWI 65 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~---------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~ 65 (83)
|||||++.++....+. ....+.+||++|++++...+..++++++++++|+|+++..+|.....|+
T Consensus 25 ~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~ 104 (173)
T cd04155 25 AGKTTILKQLASEDISHITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAEL 104 (173)
T ss_pred CCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHH
Confidence 7999999998876432 3467889999999999999999999999999999999999999988877
Q ss_pred HHHHHh-cCCCceEEEEeC
Q psy16649 66 RNIEEN-ASANVEKMLLGN 83 (83)
Q Consensus 66 ~~~~~~-~~~~~piilvgN 83 (83)
..+.+. ...++|+++++|
T Consensus 105 ~~~~~~~~~~~~p~ivv~n 123 (173)
T cd04155 105 VELLEEEKLAGVPVLVFAN 123 (173)
T ss_pred HHHHhChhhcCCCEEEEEE
Confidence 766543 235799999987
No 140
>KOG0074|consensus
Probab=99.66 E-value=3.2e-16 Score=87.34 Aligned_cols=83 Identities=28% Similarity=0.424 Sum_probs=68.8
Q ss_pred CCcceeeeeeccCccc----------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ----------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNW 64 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~----------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w 64 (83)
+|||+++.++...... ..++|++||.+||...+..|..||.+.|++|+|.|.+|+..|+++..-
T Consensus 28 AGKTT~LKqL~sED~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~e 107 (185)
T KOG0074|consen 28 AGKTTFLKQLKSEDPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEE 107 (185)
T ss_pred CcchhHHHHHccCChhhccccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEEEEEeCCchHhHHHHHHH
Confidence 6999999987654332 669999999999999999999999999999999999999999999765
Q ss_pred HHHHHH-hcCCCceEEEEeC
Q psy16649 65 IRNIEE-NASANVEKMLLGN 83 (83)
Q Consensus 65 ~~~~~~-~~~~~~piilvgN 83 (83)
+-++.+ ..-..+|+.+.+|
T Consensus 108 l~ELleeeKl~~vpvlIfan 127 (185)
T KOG0074|consen 108 LVELLEEEKLAEVPVLIFAN 127 (185)
T ss_pred HHHHhhhhhhhccceeehhh
Confidence 555544 3336788888765
No 141
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.63 E-value=5.2e-16 Score=88.28 Aligned_cols=83 Identities=12% Similarity=0.136 Sum_probs=63.2
Q ss_pred CCcceeeeeeccCcc-------c-----------e-EEEEEEEeCCCch----hhhcchhhhcc---CCcEEEEEEECCC
Q psy16649 1 SGENLCTLQIFRGCF-------Q-----------H-NFHINYRDTAGQE----RFRTITTAYYR---GAMGIMLVYDITN 54 (83)
Q Consensus 1 ~GKss~~~~~~~~~~-------~-----------~-~~~l~i~Dt~g~~----~~~~~~~~~~~---~~~~~ilv~d~~~ 54 (83)
+|||||+.++..... . . ..++.+|||+|+. ....+...+++ .+|++++|+|.++
T Consensus 11 ~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~ 90 (170)
T cd01898 11 AGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSG 90 (170)
T ss_pred CCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCC
Confidence 799999999874321 1 1 2489999999963 22334444444 5999999999999
Q ss_pred h-hHHHHHHHHHHHHHHhcC--CCceEEEEeC
Q psy16649 55 E-KSFDNIKNWIRNIEENAS--ANVEKMLLGN 83 (83)
Q Consensus 55 ~-~s~~~~~~w~~~~~~~~~--~~~piilvgN 83 (83)
+ ++++++..|.+++.+..+ ...|+++|+|
T Consensus 91 ~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~N 122 (170)
T cd01898 91 DDDPVEDYKTIRNELELYNPELLEKPRIVVLN 122 (170)
T ss_pred CCCHHHHHHHHHHHHHHhCccccccccEEEEE
Confidence 9 899999999999987643 3688999987
No 142
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.62 E-value=9.7e-16 Score=89.45 Aligned_cols=79 Identities=18% Similarity=0.308 Sum_probs=61.2
Q ss_pred CCcceeeeeecc--Cccc--------------------------------eEEEEEEEeCCCchhhhcchhhhccCCcEE
Q psy16649 1 SGENLCTLQIFR--GCFQ--------------------------------HNFHINYRDTAGQERFRTITTAYYRGAMGI 46 (83)
Q Consensus 1 ~GKss~~~~~~~--~~~~--------------------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ 46 (83)
+|||||+.++.. +.|. +.+++++|||+|+++|...+..+++++|++
T Consensus 13 ~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ 92 (194)
T cd01891 13 HGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVERVLSMVDGV 92 (194)
T ss_pred CCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHHHHHHHhcCEE
Confidence 699999999875 3221 346889999999999999999999999999
Q ss_pred EEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 47 MLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 47 ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
++|||.++. .+.....|+..+.. .++|+++|+|
T Consensus 93 ilV~d~~~~-~~~~~~~~~~~~~~---~~~p~iiv~N 125 (194)
T cd01891 93 LLLVDASEG-PMPQTRFVLKKALE---LGLKPIVVIN 125 (194)
T ss_pred EEEEECCCC-ccHHHHHHHHHHHH---cCCCEEEEEE
Confidence 999999874 23444445544432 4678888887
No 143
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.59 E-value=4.6e-15 Score=82.42 Aligned_cols=83 Identities=30% Similarity=0.474 Sum_probs=71.4
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCCh-hHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNE-KSFD 59 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~-~s~~ 59 (83)
+||||++.++..+.+. ..+.+.+||++|++++..++..+++++++++.++|+... .++.
T Consensus 12 ~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~ 91 (161)
T TIGR00231 12 VGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVE 91 (161)
T ss_pred CCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeeehhhh
Confidence 7999999998888764 227889999999999999999999999999999999998 8888
Q ss_pred HHH-HHHHHHHHhcCCCceEEEEeC
Q psy16649 60 NIK-NWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 60 ~~~-~w~~~~~~~~~~~~piilvgN 83 (83)
... .|...+......+.|+++++|
T Consensus 92 ~~~~~~~~~~~~~~~~~~p~ivv~n 116 (161)
T TIGR00231 92 EILEKQTKEIIHHAESNVPIILVGN 116 (161)
T ss_pred hHhHHHHHHHHHhcccCCcEEEEEE
Confidence 776 788888776544889999987
No 144
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.57 E-value=5.9e-15 Score=83.85 Aligned_cols=81 Identities=15% Similarity=0.165 Sum_probs=59.0
Q ss_pred CCcceeeeeeccCccc------------------eEEEEEEEeCCCchhh----------hcchhhhccCCcEEEEEEEC
Q psy16649 1 SGENLCTLQIFRGCFQ------------------HNFHINYRDTAGQERF----------RTITTAYYRGAMGIMLVYDI 52 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~------------------~~~~l~i~Dt~g~~~~----------~~~~~~~~~~~~~~ilv~d~ 52 (83)
+||||++.++..+.+. ..+.+++|||+|++.. ..+. .....++++++|+|.
T Consensus 11 ~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~-~~~~~~d~~l~v~d~ 89 (168)
T cd01897 11 VGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAIT-ALAHLRAAVLFLFDP 89 (168)
T ss_pred CCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHH-HHHhccCcEEEEEeC
Confidence 6999999998886653 2268999999998421 1111 112236899999999
Q ss_pred CChhHH--HHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 53 TNEKSF--DNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 53 ~~~~s~--~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
++++++ +....|++.+++.. .+.|+++|+|
T Consensus 90 ~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~N 121 (168)
T cd01897 90 SETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLN 121 (168)
T ss_pred CcccccchHHHHHHHHHHHhhc-CcCCeEEEEE
Confidence 998764 66678888887654 5799999987
No 145
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.57 E-value=2.5e-14 Score=78.58 Aligned_cols=83 Identities=41% Similarity=0.762 Sum_probs=68.5
Q ss_pred CCcceeeeeeccCcc-c-------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCF-Q-------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~-~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
|||||++.++..... . ....+.+||++|++.+......+++.++++++|+|.+++.+++.
T Consensus 7 ~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~ 86 (157)
T cd00882 7 VGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTDRESFEN 86 (157)
T ss_pred CcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHHHH
Confidence 799999999876554 1 37789999999999998888999999999999999999999999
Q ss_pred HHHHHHHH-HHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNI-EENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~-~~~~~~~~piilvgN 83 (83)
+..|.... ........|+++++|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~ivv~n 110 (157)
T cd00882 87 VKEWLLLILINKEGENIPIILVGN 110 (157)
T ss_pred HHHHHHHHHHhhccCCCcEEEEEe
Confidence 99883332 333347899999886
No 146
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.57 E-value=8.1e-15 Score=82.69 Aligned_cols=77 Identities=13% Similarity=0.127 Sum_probs=56.1
Q ss_pred CCcceeeeeeccC---ccc------------------e-EEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCC---h
Q psy16649 1 SGENLCTLQIFRG---CFQ------------------H-NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITN---E 55 (83)
Q Consensus 1 ~GKss~~~~~~~~---~~~------------------~-~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~---~ 55 (83)
+||||++.++... .+. . ...+++|||+|+++|......+++++|++++|+|.++ +
T Consensus 11 ~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~~ 90 (164)
T cd04171 11 HGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIMP 90 (164)
T ss_pred CCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCccH
Confidence 7999999998731 111 1 4678999999999998777788999999999999987 5
Q ss_pred hHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 56 KSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 56 ~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
++++.+.. ++. . ...|+++|+|
T Consensus 91 ~~~~~~~~----~~~-~-~~~~~ilv~N 112 (164)
T cd04171 91 QTREHLEI----LEL-L-GIKRGLVVLT 112 (164)
T ss_pred hHHHHHHH----HHH-h-CCCcEEEEEE
Confidence 55544432 221 1 2248888887
No 147
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.56 E-value=8.4e-15 Score=85.91 Aligned_cols=82 Identities=16% Similarity=0.137 Sum_probs=63.1
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCch---------hhhcchhhhccCCcEEEEEEEC
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQE---------RFRTITTAYYRGAMGIMLVYDI 52 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~---------~~~~~~~~~~~~~~~~ilv~d~ 52 (83)
|||||++.++..+.+. ....+.+|||+|.. .+.... ..+..+|++++|+|.
T Consensus 52 ~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~~~~~d~ii~v~D~ 130 (204)
T cd01878 52 AGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTL-EEVAEADLLLHVVDA 130 (204)
T ss_pred CCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHH-HHHhcCCeEEEEEEC
Confidence 7999999988776421 12378899999972 222222 246789999999999
Q ss_pred CChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 53 TNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 53 ~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
+++.++..++.|.+.+......+.|+++|+|
T Consensus 131 ~~~~~~~~~~~~~~~l~~~~~~~~~viiV~N 161 (204)
T cd01878 131 SDPDYEEQIETVEKVLKELGAEDIPMILVLN 161 (204)
T ss_pred CCCChhhHHHHHHHHHHHcCcCCCCEEEEEE
Confidence 9999999988888888765546789999997
No 148
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.55 E-value=1.3e-14 Score=82.23 Aligned_cols=76 Identities=21% Similarity=0.175 Sum_probs=59.2
Q ss_pred CCcceeeeeeccCccc------------------e---EEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCCh---h
Q psy16649 1 SGENLCTLQIFRGCFQ------------------H---NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNE---K 56 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~------------------~---~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~---~ 56 (83)
+||||++.++..+.+. . ...+.+|||+|++.|..++..+++.+|++++|+|.++. +
T Consensus 11 ~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~ 90 (168)
T cd01887 11 HGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVMPQ 90 (168)
T ss_pred CCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCccHH
Confidence 7999999998877653 1 45789999999999999999999999999999999984 4
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 57 SFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 57 s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
++..+. .+.. .+.|+++|+|
T Consensus 91 ~~~~~~----~~~~---~~~p~ivv~N 110 (168)
T cd01887 91 TIEAIK----LAKA---ANVPFIVALN 110 (168)
T ss_pred HHHHHH----HHHH---cCCCEEEEEE
Confidence 443332 2222 4578888887
No 149
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.52 E-value=4.4e-15 Score=82.57 Aligned_cols=75 Identities=16% Similarity=0.060 Sum_probs=55.6
Q ss_pred CCcceeeeeeccCccc------eEEEEEEEeCCCc-----hhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ------HNFHINYRDTAGQ-----ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIE 69 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~------~~~~l~i~Dt~g~-----~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~ 69 (83)
+|||||+.++..+.+. ..+.-.+|||+|+ +.++.+.+ .++++|++++|||+++++++.. ..|.+.+
T Consensus 11 vGKSsL~~~l~~~~~~~~~t~~~~~~~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d~~~~~s~~~-~~~~~~~- 87 (142)
T TIGR02528 11 CGKTTLTQALQGEEILYKKTQAVEYNDGAIDTPGEYVENRRLYSALIV-TAADADVIALVQSATDPESRFP-PGFASIF- 87 (142)
T ss_pred CCHHHHHHHHcCCccccccceeEEEcCeeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEecCCCCCcCCC-hhHHHhc-
Confidence 6999999999887664 1223368999998 34555544 5899999999999999999866 3454332
Q ss_pred HhcCCCceEEEEeC
Q psy16649 70 ENASANVEKMLLGN 83 (83)
Q Consensus 70 ~~~~~~~piilvgN 83 (83)
..|+++|+|
T Consensus 88 -----~~p~ilv~N 96 (142)
T TIGR02528 88 -----VKPVIGLVT 96 (142)
T ss_pred -----cCCeEEEEE
Confidence 138888887
No 150
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.52 E-value=3.2e-14 Score=89.80 Aligned_cols=82 Identities=18% Similarity=0.186 Sum_probs=63.4
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCc---------hhhhcchhhhccCCcEEEEEEEC
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQ---------ERFRTITTAYYRGAMGIMLVYDI 52 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~---------~~~~~~~~~~~~~~~~~ilv~d~ 52 (83)
+||||++.++....+. ....+.+|||+|. +.|.... ..+++||++++|+|.
T Consensus 200 vGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~~~ADlil~VvD~ 278 (351)
T TIGR03156 200 AGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATL-EEVREADLLLHVVDA 278 (351)
T ss_pred CCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHH-HHHHhCCEEEEEEEC
Confidence 6999999998775421 2357889999997 3343332 358899999999999
Q ss_pred CChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 53 TNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 53 ~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
+++.+++.+..|.+.+.+....+.|+++|+|
T Consensus 279 s~~~~~~~~~~~~~~L~~l~~~~~piIlV~N 309 (351)
T TIGR03156 279 SDPDREEQIEAVEKVLEELGAEDIPQLLVYN 309 (351)
T ss_pred CCCchHHHHHHHHHHHHHhccCCCCEEEEEE
Confidence 9999998888887777665445789999987
No 151
>KOG0076|consensus
Probab=99.51 E-value=1.2e-14 Score=83.18 Aligned_cols=67 Identities=30% Similarity=0.474 Sum_probs=57.1
Q ss_pred eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHh-cCCCceEEEEeC
Q psy16649 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEN-ASANVEKMLLGN 83 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~-~~~~~piilvgN 83 (83)
....+.+||.+||+..+++|..||..+|++|+++|.++++.|+....-++.+.++ .-..+|+++.+|
T Consensus 67 ~~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lan 134 (197)
T KOG0076|consen 67 CNAPLSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLAN 134 (197)
T ss_pred ccceeEEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcc
Confidence 5567889999999999999999999999999999999999999988766666443 236788888776
No 152
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.49 E-value=6.1e-14 Score=79.97 Aligned_cols=83 Identities=14% Similarity=0.092 Sum_probs=63.1
Q ss_pred CCcceeeeeeccCccc------------------e-EEEEEEEeCCCchh----hhcch---hhhccCCcEEEEEEECCC
Q psy16649 1 SGENLCTLQIFRGCFQ------------------H-NFHINYRDTAGQER----FRTIT---TAYYRGAMGIMLVYDITN 54 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~------------------~-~~~l~i~Dt~g~~~----~~~~~---~~~~~~~~~~ilv~d~~~ 54 (83)
+||||++.++....+. . ...+.+|||+|... .+.+. ..++++++++++|+|.++
T Consensus 7 ~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~ 86 (176)
T cd01881 7 VGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASE 86 (176)
T ss_pred CcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEEEEeccC
Confidence 6999999998776420 2 56789999999733 22232 345778999999999999
Q ss_pred h------hHHHHHHHHHHHHHHhcC-------CCceEEEEeC
Q psy16649 55 E------KSFDNIKNWIRNIEENAS-------ANVEKMLLGN 83 (83)
Q Consensus 55 ~------~s~~~~~~w~~~~~~~~~-------~~~piilvgN 83 (83)
. .++++++.|..++..... .+.|+++|+|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~N 128 (176)
T cd01881 87 DDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLN 128 (176)
T ss_pred CccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEE
Confidence 8 689999889888876542 3789999987
No 153
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.48 E-value=7.3e-14 Score=93.05 Aligned_cols=62 Identities=19% Similarity=0.263 Sum_probs=52.9
Q ss_pred EEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 18 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
.+++++|||+|+++|...+..+++.+|++|+|+|.++..+++....|..... .++|+++|+|
T Consensus 69 ~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViN 130 (595)
T TIGR01393 69 TYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVIN 130 (595)
T ss_pred EEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEE
Confidence 3789999999999999999999999999999999999877777777754432 3678999987
No 154
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.46 E-value=1.1e-13 Score=90.10 Aligned_cols=79 Identities=18% Similarity=0.160 Sum_probs=59.3
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchh--------hhcchhhhccCCcEEEEEEECC
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQER--------FRTITTAYYRGAMGIMLVYDIT 53 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~--------~~~~~~~~~~~~~~~ilv~d~~ 53 (83)
+|||||+.++..+.+. ....+.+|||+|++. +......+++.+|++|+|+|.+
T Consensus 49 vGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~ 128 (472)
T PRK03003 49 VGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDAT 128 (472)
T ss_pred CCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECC
Confidence 6999999999876532 124588999999762 4455677899999999999999
Q ss_pred ChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 54 NEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 54 ~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
+..++.. ..|.+.++. .+.|+++|+|
T Consensus 129 ~~~s~~~-~~i~~~l~~---~~~piilV~N 154 (472)
T PRK03003 129 VGATATD-EAVARVLRR---SGKPVILAAN 154 (472)
T ss_pred CCCCHHH-HHHHHHHHH---cCCCEEEEEE
Confidence 9877543 344444442 4689999998
No 155
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.45 E-value=1.2e-13 Score=89.42 Aligned_cols=78 Identities=17% Similarity=0.166 Sum_probs=59.7
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhc--------chhhhccCCcEEEEEEECC
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRT--------ITTAYYRGAMGIMLVYDIT 53 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~--------~~~~~~~~~~~~ilv~d~~ 53 (83)
+||||++.++...... ....+.+|||+|+.++.. ....+++++|++++|||.+
T Consensus 214 vGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s 293 (442)
T TIGR00450 214 VGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDAS 293 (442)
T ss_pred CcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECC
Confidence 6999999998875421 234678999999855432 2346889999999999999
Q ss_pred ChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 54 NEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 54 ~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
++.+++.. |+.++.. .+.|+++|+|
T Consensus 294 ~~~s~~~~--~l~~~~~---~~~piIlV~N 318 (442)
T TIGR00450 294 QPLTKDDF--LIIDLNK---SKKPFILVLN 318 (442)
T ss_pred CCCChhHH--HHHHHhh---CCCCEEEEEE
Confidence 99988876 7666542 4679999987
No 156
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.45 E-value=2.5e-13 Score=76.27 Aligned_cols=77 Identities=14% Similarity=0.043 Sum_probs=56.3
Q ss_pred CCcceeeeeeccCccc------------------eEEEEEEEeCCCchhhhc------chhhhcc--CCcEEEEEEECCC
Q psy16649 1 SGENLCTLQIFRGCFQ------------------HNFHINYRDTAGQERFRT------ITTAYYR--GAMGIMLVYDITN 54 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~------------------~~~~l~i~Dt~g~~~~~~------~~~~~~~--~~~~~ilv~d~~~ 54 (83)
+||||++.++....+. ....+.+|||+|++.+.. ++..++. +++++++|+|.++
T Consensus 7 ~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~ 86 (158)
T cd01879 7 VGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATN 86 (158)
T ss_pred CCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCc
Confidence 6999999998765422 225688999999987764 3566775 9999999999998
Q ss_pred hhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 55 EKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 55 ~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
.++. ..|..++.+ .+.|+++|+|
T Consensus 87 ~~~~---~~~~~~~~~---~~~~~iiv~N 109 (158)
T cd01879 87 LERN---LYLTLQLLE---LGLPVVVALN 109 (158)
T ss_pred chhH---HHHHHHHHH---cCCCEEEEEe
Confidence 6553 234444433 3688999887
No 157
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.44 E-value=2e-13 Score=85.79 Aligned_cols=83 Identities=13% Similarity=0.125 Sum_probs=63.0
Q ss_pred CCcceeeeeeccCc-------cc------------eEEEEEEEeCCCchh----hhcchhh---hccCCcEEEEEEECCC
Q psy16649 1 SGENLCTLQIFRGC-------FQ------------HNFHINYRDTAGQER----FRTITTA---YYRGAMGIMLVYDITN 54 (83)
Q Consensus 1 ~GKss~~~~~~~~~-------~~------------~~~~l~i~Dt~g~~~----~~~~~~~---~~~~~~~~ilv~d~~~ 54 (83)
+|||||+.++.... |. ...++.+||++|.-. ...+... ++..++++++|+|+++
T Consensus 169 aGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~ 248 (335)
T PRK12299 169 AGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEA 248 (335)
T ss_pred CCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCC
Confidence 79999999987532 11 224689999999632 2233333 4557999999999999
Q ss_pred hhHHHHHHHHHHHHHHhcC--CCceEEEEeC
Q psy16649 55 EKSFDNIKNWIRNIEENAS--ANVEKMLLGN 83 (83)
Q Consensus 55 ~~s~~~~~~w~~~~~~~~~--~~~piilvgN 83 (83)
++++++++.|.+++..+.+ .+.|+++|+|
T Consensus 249 ~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~N 279 (335)
T PRK12299 249 VDPVEDYKTIRNELEKYSPELADKPRILVLN 279 (335)
T ss_pred CCCHHHHHHHHHHHHHhhhhcccCCeEEEEE
Confidence 8899999999999988753 4689999987
No 158
>KOG1707|consensus
Probab=99.43 E-value=1.3e-13 Score=90.48 Aligned_cols=83 Identities=24% Similarity=0.342 Sum_probs=73.0
Q ss_pred CCcceeeeeeccCccc------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIK 62 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~ 62 (83)
||||||+..+....|+ ..+-..|.|++..+.-+.....-+++|+++.++|++++++|++.++
T Consensus 20 ~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~T~D~is 99 (625)
T KOG1707|consen 20 VGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDESTVDRIS 99 (625)
T ss_pred ccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEEEEecCChHHhhhhh
Confidence 7999999999999988 5666889999876665666677899999999999999999999997
Q ss_pred -HHHHHHHHhcC--CCceEEEEeC
Q psy16649 63 -NWIRNIEENAS--ANVEKMLLGN 83 (83)
Q Consensus 63 -~w~~~~~~~~~--~~~piilvgN 83 (83)
.|++.+++..+ ..+|||||||
T Consensus 100 t~WLPlir~~~~~~~~~PVILvGN 123 (625)
T KOG1707|consen 100 TKWLPLIRQLFGDYHETPVILVGN 123 (625)
T ss_pred hhhhhhhhcccCCCccCCEEEEee
Confidence 89999998663 5899999998
No 159
>PRK04213 GTP-binding protein; Provisional
Probab=99.43 E-value=1.9e-14 Score=84.20 Aligned_cols=83 Identities=17% Similarity=0.205 Sum_probs=52.1
Q ss_pred CCcceeeeeeccCccc-----------e---EEEEEEEeCCC-----------chhhhcchhhhcc-CCcEEEEEEECCC
Q psy16649 1 SGENLCTLQIFRGCFQ-----------H---NFHINYRDTAG-----------QERFRTITTAYYR-GAMGIMLVYDITN 54 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-----------~---~~~l~i~Dt~g-----------~~~~~~~~~~~~~-~~~~~ilv~d~~~ 54 (83)
+|||||+.++..+.+. . .-.+.+|||+| +++++.++..|++ +++++.+++.+.+
T Consensus 20 ~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d 99 (201)
T PRK04213 20 VGKSTLVRELTGKKVRVGKRPGVTRKPNHYDWGDFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVD 99 (201)
T ss_pred CCHHHHHHHHhCCCCccCCCCceeeCceEEeecceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEe
Confidence 6999999999876653 1 11588999999 7889888888876 4444433333334
Q ss_pred hhHHHHH-HHHHH--------H-HHHhcCCCceEEEEeC
Q psy16649 55 EKSFDNI-KNWIR--------N-IEENASANVEKMLLGN 83 (83)
Q Consensus 55 ~~s~~~~-~~w~~--------~-~~~~~~~~~piilvgN 83 (83)
..++.++ +.|.+ + +......++|+++|+|
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~N 138 (201)
T PRK04213 100 GKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVN 138 (201)
T ss_pred CccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEE
Confidence 4444333 23421 1 1111225789999987
No 160
>KOG0072|consensus
Probab=99.41 E-value=1.2e-12 Score=73.27 Aligned_cols=83 Identities=16% Similarity=0.278 Sum_probs=66.9
Q ss_pred CCcceeeeeeccCccc---------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHH-HH
Q psy16649 1 SGENLCTLQIFRGCFQ---------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIK-NW 64 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~---------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~-~w 64 (83)
+|||++.++...+.-. ++.++++||.+||-..+..|+.||.+.+++|+|.|.+|++...-.. .+
T Consensus 29 aGkttIlyrlqvgevvttkPtigfnve~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~dris~a~~el 108 (182)
T KOG0072|consen 29 AGKTTILYRLQVGEVVTTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVEL 108 (182)
T ss_pred CCeeEEEEEcccCcccccCCCCCcCccccccccccceeeEccCcccccHHHHHHhcccceEEEEEeccchhhhhhhHHHH
Confidence 6999999998887654 7889999999999999999999999999999999999998776655 34
Q ss_pred HHHHHHhcCCCceEEEEeC
Q psy16649 65 IRNIEENASANVEKMLLGN 83 (83)
Q Consensus 65 ~~~~~~~~~~~~piilvgN 83 (83)
+..+.+..-....+++++|
T Consensus 109 ~~mL~E~eLq~a~llv~an 127 (182)
T KOG0072|consen 109 YSMLQEEELQHAKLLVFAN 127 (182)
T ss_pred HHHhccHhhcCceEEEEec
Confidence 4455443223466666665
No 161
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.41 E-value=3.9e-13 Score=89.47 Aligned_cols=56 Identities=18% Similarity=0.193 Sum_probs=47.0
Q ss_pred EEEEeCCCchhhhcchhhhccCCcEEEEEEECCC---hhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 21 INYRDTAGQERFRTITTAYYRGAMGIMLVYDITN---EKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 21 l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~---~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
+.+|||+|++.|..++..+++.+|++++|+|.++ +++++.+..+ +. .++|+++++|
T Consensus 71 l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l----~~---~~vpiIVv~N 129 (590)
T TIGR00491 71 LLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNIL----RM---YKTPFVVAAN 129 (590)
T ss_pred EEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHH----HH---cCCCEEEEEE
Confidence 8899999999999999999999999999999997 6777665433 11 3678999987
No 162
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.40 E-value=6.7e-13 Score=86.49 Aligned_cols=79 Identities=18% Similarity=0.113 Sum_probs=59.5
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCc----------hhhhcch-hhhccCCcEEEEEE
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQ----------ERFRTIT-TAYYRGAMGIMLVY 50 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~----------~~~~~~~-~~~~~~~~~~ilv~ 50 (83)
+|||||+.++....+. ....+.+|||+|. +.|..++ ..+++++|++++|+
T Consensus 222 vGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~ 301 (472)
T PRK03003 222 VGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLI 301 (472)
T ss_pred CCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEE
Confidence 6999999999876541 2235689999994 5555554 34689999999999
Q ss_pred ECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 51 DITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 51 d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
|.++..+++.++ ++..+.+ .+.|+++|+|
T Consensus 302 Da~~~~s~~~~~-~~~~~~~---~~~piIiV~N 330 (472)
T PRK03003 302 DASEPISEQDQR-VLSMVIE---AGRALVLAFN 330 (472)
T ss_pred eCCCCCCHHHHH-HHHHHHH---cCCCEEEEEE
Confidence 999999988875 4444432 4689999987
No 163
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.39 E-value=6.6e-13 Score=78.65 Aligned_cols=62 Identities=24% Similarity=0.309 Sum_probs=49.7
Q ss_pred EEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 18 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
.+.+.+|||+|+++|......+++.+|++++|+|.++..++.. +.|++.... .+.|+++|+|
T Consensus 70 ~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviN 131 (213)
T cd04167 70 SYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVIN 131 (213)
T ss_pred EEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEE
Confidence 4789999999999998888999999999999999988776643 344444432 3488999887
No 164
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.38 E-value=7.9e-13 Score=82.93 Aligned_cols=83 Identities=8% Similarity=0.096 Sum_probs=63.3
Q ss_pred CCcceeeeeeccCcc-------c------------eEEEEEEEeCCCchh----hhcchhhhcc---CCcEEEEEEECCC
Q psy16649 1 SGENLCTLQIFRGCF-------Q------------HNFHINYRDTAGQER----FRTITTAYYR---GAMGIMLVYDITN 54 (83)
Q Consensus 1 ~GKss~~~~~~~~~~-------~------------~~~~l~i~Dt~g~~~----~~~~~~~~~~---~~~~~ilv~d~~~ 54 (83)
+|||||+.++..... . ....+.+||++|... ...+...+++ .++++++|+|+++
T Consensus 168 aGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~ 247 (329)
T TIGR02729 168 AGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISP 247 (329)
T ss_pred CCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCcc
Confidence 699999999876542 1 126889999999742 2234445544 6999999999998
Q ss_pred h---hHHHHHHHHHHHHHHhcC--CCceEEEEeC
Q psy16649 55 E---KSFDNIKNWIRNIEENAS--ANVEKMLLGN 83 (83)
Q Consensus 55 ~---~s~~~~~~w~~~~~~~~~--~~~piilvgN 83 (83)
. +++++++.|.+++....+ .+.|++||+|
T Consensus 248 ~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~N 281 (329)
T TIGR02729 248 LDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLN 281 (329)
T ss_pred ccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEe
Confidence 7 789999999998877643 4689999987
No 165
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.37 E-value=1.5e-12 Score=74.85 Aligned_cols=79 Identities=19% Similarity=0.219 Sum_probs=60.9
Q ss_pred CCcceeeeeeccCccc----------------------------------eEEEEEEEeCCCchhhhcchhhhccCCcEE
Q psy16649 1 SGENLCTLQIFRGCFQ----------------------------------HNFHINYRDTAGQERFRTITTAYYRGAMGI 46 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~----------------------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ 46 (83)
+||||++..+...... ....+.+|||+|+.++...+..+++.+|++
T Consensus 10 ~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~d~~ 89 (189)
T cd00881 10 HGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVIRGLSVSDGA 89 (189)
T ss_pred CCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHHHHHHhcCEE
Confidence 6999999998655443 135789999999999999999999999999
Q ss_pred EEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 47 MLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 47 ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
++|+|.++..+... ..++..+.. .+.|+++|+|
T Consensus 90 i~v~d~~~~~~~~~-~~~~~~~~~---~~~~i~iv~n 122 (189)
T cd00881 90 ILVVDANEGVQPQT-REHLRIARE---GGLPIIVAIN 122 (189)
T ss_pred EEEEECCCCCcHHH-HHHHHHHHH---CCCCeEEEEE
Confidence 99999988765443 334444433 4688888876
No 166
>PRK11058 GTPase HflX; Provisional
Probab=99.37 E-value=1.5e-12 Score=84.10 Aligned_cols=83 Identities=19% Similarity=0.161 Sum_probs=60.2
Q ss_pred CCcceeeeeeccCccc-------------eE------EEEEEEeCCCchhh--hcch------hhhccCCcEEEEEEECC
Q psy16649 1 SGENLCTLQIFRGCFQ-------------HN------FHINYRDTAGQERF--RTIT------TAYYRGAMGIMLVYDIT 53 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------~~------~~l~i~Dt~g~~~~--~~~~------~~~~~~~~~~ilv~d~~ 53 (83)
+||||+++++....+. .. ..+.+|||+|..+. ..++ ...++.||++++|+|.+
T Consensus 208 aGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS 287 (426)
T PRK11058 208 AGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAA 287 (426)
T ss_pred CCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCC
Confidence 7999999997764321 11 25679999998432 1222 23468999999999999
Q ss_pred ChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 54 NEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 54 ~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
++.+++.+..|.+.+.+....+.|+++|+|
T Consensus 288 ~~~~~e~l~~v~~iL~el~~~~~pvIiV~N 317 (426)
T PRK11058 288 DVRVQENIEAVNTVLEEIDAHEIPTLLVMN 317 (426)
T ss_pred CccHHHHHHHHHHHHHHhccCCCCEEEEEE
Confidence 999998887666655554445789999987
No 167
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.36 E-value=1.4e-12 Score=88.55 Aligned_cols=76 Identities=21% Similarity=0.246 Sum_probs=59.2
Q ss_pred CCcceeeeeeccCccc----------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCC---h
Q psy16649 1 SGENLCTLQIFRGCFQ----------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITN---E 55 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~----------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~---~ 55 (83)
+|||||+.++....+. ....+.+|||+|++.|..++..+++.+|++|+|+|.++ +
T Consensus 255 vGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~ 334 (742)
T CHL00189 255 HGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKP 334 (742)
T ss_pred CCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCCh
Confidence 6999999887654332 13788999999999999999999999999999999987 4
Q ss_pred hHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 56 KSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 56 ~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
++++.+.. + ...++|+++++|
T Consensus 335 QT~E~I~~----~---k~~~iPiIVViN 355 (742)
T CHL00189 335 QTIEAINY----I---QAANVPIIVAIN 355 (742)
T ss_pred hhHHHHHH----H---HhcCceEEEEEE
Confidence 55544432 2 124689999987
No 168
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.36 E-value=7.9e-13 Score=85.79 Aligned_cols=77 Identities=13% Similarity=0.058 Sum_probs=58.9
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcc--------hhhhccCCcEEEEEEECC
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTI--------TTAYYRGAMGIMLVYDIT 53 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~--------~~~~~~~~~~~ilv~d~~ 53 (83)
+||||++.++...... ....+.+|||+|.+.+... ...+++++|++++|+|.+
T Consensus 226 vGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s 305 (449)
T PRK05291 226 VGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDAS 305 (449)
T ss_pred CCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCC
Confidence 6999999998765431 2356899999998654332 234788999999999999
Q ss_pred ChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 54 NEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 54 ~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
++.+++....|.. ..+.|+++|+|
T Consensus 306 ~~~s~~~~~~l~~------~~~~piiiV~N 329 (449)
T PRK05291 306 EPLTEEDDEILEE------LKDKPVIVVLN 329 (449)
T ss_pred CCCChhHHHHHHh------cCCCCcEEEEE
Confidence 9998887665543 25789999987
No 169
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.33 E-value=1.6e-12 Score=88.75 Aligned_cols=76 Identities=18% Similarity=0.206 Sum_probs=58.1
Q ss_pred CCcceeeeeeccCccc------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCC---hhHHH
Q psy16649 1 SGENLCTLQIFRGCFQ------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITN---EKSFD 59 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~---~~s~~ 59 (83)
+|||||+.++..+.+. ....+.+|||+|++.|..++...++.+|++|+|+|.++ +++++
T Consensus 301 ~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~~qT~e 380 (787)
T PRK05306 301 HGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIE 380 (787)
T ss_pred CCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCCHhHHH
Confidence 6999999887543322 13578999999999999999999999999999999987 45544
Q ss_pred HHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 60 NIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 60 ~~~~w~~~~~~~~~~~~piilvgN 83 (83)
.+. .....++|+++++|
T Consensus 381 ~i~-------~a~~~~vPiIVviN 397 (787)
T PRK05306 381 AIN-------HAKAAGVPIIVAIN 397 (787)
T ss_pred HHH-------HHHhcCCcEEEEEE
Confidence 332 11224688999887
No 170
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.32 E-value=3.3e-12 Score=71.41 Aligned_cols=77 Identities=13% Similarity=0.050 Sum_probs=57.5
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhc--------chhhhccCCcEEEEEEECC
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRT--------ITTAYYRGAMGIMLVYDIT 53 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~--------~~~~~~~~~~~~ilv~d~~ 53 (83)
+||||++.++....+. ....+.+|||+|...+.. ....++..+|++++|+|++
T Consensus 12 ~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~ 91 (157)
T cd04164 12 VGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDAS 91 (157)
T ss_pred CCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECC
Confidence 6999999888765431 235789999999765432 1235677999999999999
Q ss_pred ChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 54 NEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 54 ~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
++.+....+.|.. ....|+++|+|
T Consensus 92 ~~~~~~~~~~~~~------~~~~~vi~v~n 115 (157)
T cd04164 92 RGLDEEDLEILEL------PADKPIIVVLN 115 (157)
T ss_pred CCCCHHHHHHHHh------hcCCCEEEEEE
Confidence 9888887765543 35788898886
No 171
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.32 E-value=2.2e-12 Score=85.89 Aligned_cols=76 Identities=20% Similarity=0.221 Sum_probs=57.6
Q ss_pred CCcceeeeeeccCccc------------------eEE-EEEEEeCCCchhhhcchhhhccCCcEEEEEEECCC---hhHH
Q psy16649 1 SGENLCTLQIFRGCFQ------------------HNF-HINYRDTAGQERFRTITTAYYRGAMGIMLVYDITN---EKSF 58 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~------------------~~~-~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~---~~s~ 58 (83)
+|||||+.++....+. ... .+.+|||+|+++|..++...++.+|++++|+|.++ ++++
T Consensus 98 ~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~~qT~ 177 (587)
T TIGR00487 98 HGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTI 177 (587)
T ss_pred CCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCCHhHH
Confidence 6999999987654432 012 78899999999999999999999999999999886 3444
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 59 DNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 59 ~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
+.+. .....++|+++++|
T Consensus 178 e~i~-------~~~~~~vPiIVviN 195 (587)
T TIGR00487 178 EAIS-------HAKAANVPIIVAIN 195 (587)
T ss_pred HHHH-------HHHHcCCCEEEEEE
Confidence 3321 11224688999887
No 172
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.30 E-value=3.7e-12 Score=76.82 Aligned_cols=63 Identities=17% Similarity=0.205 Sum_probs=50.1
Q ss_pred eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
+..++++|||+|+.+|...+..+++.+|++++|+|.++.... ..+.|++.+++ .++|+++++|
T Consensus 62 ~~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~---~~~P~iivvN 124 (237)
T cd04168 62 EDTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK---LNIPTIIFVN 124 (237)
T ss_pred CCEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH---cCCCEEEEEE
Confidence 467899999999999998889999999999999999986543 34455555543 3578888877
No 173
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.30 E-value=5e-12 Score=84.49 Aligned_cols=62 Identities=21% Similarity=0.278 Sum_probs=50.9
Q ss_pred EEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 18 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
.+.+++|||+|+++|...+..+++.+|++|+|+|.++....+....|..... .++|+++|+|
T Consensus 73 ~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~----~~lpiIvViN 134 (600)
T PRK05433 73 TYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NDLEIIPVLN 134 (600)
T ss_pred cEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEEEE
Confidence 5789999999999999999999999999999999998766666666643321 4678888887
No 174
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.30 E-value=3.6e-12 Score=71.32 Aligned_cols=79 Identities=14% Similarity=0.013 Sum_probs=54.4
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhc--------chhhhccCCcEEEEEEECC
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRT--------ITTAYYRGAMGIMLVYDIT 53 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~--------~~~~~~~~~~~~ilv~d~~ 53 (83)
+||||++.++...... ....+.+|||+|.+.+.. .....++++|++++++|..
T Consensus 8 ~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~ 87 (157)
T cd01894 8 VGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGR 87 (157)
T ss_pred CCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEecc
Confidence 6999999888654311 235789999999877543 3346778999999999998
Q ss_pred ChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 54 NEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 54 ~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
+..+..... ..+.+++ ...|+++|+|
T Consensus 88 ~~~~~~~~~-~~~~~~~---~~~piiiv~n 113 (157)
T cd01894 88 EGLTPADEE-IAKYLRK---SKKPVILVVN 113 (157)
T ss_pred ccCCccHHH-HHHHHHh---cCCCEEEEEE
Confidence 765544321 2222222 2488888886
No 175
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.29 E-value=6.1e-12 Score=81.11 Aligned_cols=77 Identities=19% Similarity=0.098 Sum_probs=56.1
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchh--------hhcchhhhccCCcEEEEEEECC
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQER--------FRTITTAYYRGAMGIMLVYDIT 53 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~--------~~~~~~~~~~~~~~~ilv~d~~ 53 (83)
+|||||+.++...... ....+.+|||+|++. +......+++.+|++++|+|.+
T Consensus 12 vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~ 91 (435)
T PRK00093 12 VGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGR 91 (435)
T ss_pred CCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECC
Confidence 6999999998765421 236789999999986 3344566789999999999998
Q ss_pred ChhHHH--HHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 54 NEKSFD--NIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 54 ~~~s~~--~~~~w~~~~~~~~~~~~piilvgN 83 (83)
+..+.. .+.+|+.. .+.|+++|+|
T Consensus 92 ~~~~~~~~~~~~~l~~------~~~piilv~N 117 (435)
T PRK00093 92 AGLTPADEEIAKILRK------SNKPVILVVN 117 (435)
T ss_pred CCCCHHHHHHHHHHHH------cCCcEEEEEE
Confidence 854432 23344432 2689999987
No 176
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.26 E-value=1.3e-11 Score=82.27 Aligned_cols=56 Identities=21% Similarity=0.251 Sum_probs=46.9
Q ss_pred EEEEeCCCchhhhcchhhhccCCcEEEEEEECCC---hhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 21 INYRDTAGQERFRTITTAYYRGAMGIMLVYDITN---EKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 21 l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~---~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
+.+|||+|++.|..++...++.+|++++|+|.++ +++++.+..+ +. .++|+++++|
T Consensus 73 i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~----~~---~~vpiIvviN 131 (586)
T PRK04004 73 LLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINIL----KR---RKTPFVVAAN 131 (586)
T ss_pred EEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHH----HH---cCCCEEEEEE
Confidence 6899999999999999999999999999999998 7777766532 21 3688888887
No 177
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.24 E-value=1.8e-11 Score=79.00 Aligned_cols=83 Identities=10% Similarity=0.112 Sum_probs=62.3
Q ss_pred CCcceeeeeeccCcc-----c-------------e-EEEEEEEeCCCch----hhhcchhhhcc---CCcEEEEEEECCC
Q psy16649 1 SGENLCTLQIFRGCF-----Q-------------H-NFHINYRDTAGQE----RFRTITTAYYR---GAMGIMLVYDITN 54 (83)
Q Consensus 1 ~GKss~~~~~~~~~~-----~-------------~-~~~l~i~Dt~g~~----~~~~~~~~~~~---~~~~~ilv~d~~~ 54 (83)
+|||||+.++..... + . ...+.+||++|.. ....+...|++ .++++++|+|+++
T Consensus 169 aGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~ 248 (424)
T PRK12297 169 VGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSG 248 (424)
T ss_pred CCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCc
Confidence 699999999875431 1 1 3578999999963 22334455544 5899999999986
Q ss_pred h---hHHHHHHHHHHHHHHhcC--CCceEEEEeC
Q psy16649 55 E---KSFDNIKNWIRNIEENAS--ANVEKMLLGN 83 (83)
Q Consensus 55 ~---~s~~~~~~w~~~~~~~~~--~~~piilvgN 83 (83)
. +++++...|.+++..+.+ .+.|++||+|
T Consensus 249 ~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~N 282 (424)
T PRK12297 249 SEGRDPIEDYEKINKELKLYNPRLLERPQIVVAN 282 (424)
T ss_pred cccCChHHHHHHHHHHHhhhchhccCCcEEEEEe
Confidence 5 788888999999987653 4689999987
No 178
>PRK15494 era GTPase Era; Provisional
Probab=99.23 E-value=2e-11 Score=76.94 Aligned_cols=78 Identities=22% Similarity=0.274 Sum_probs=53.2
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCch-hhhcchh-------hhccCCcEEEEEEECC
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQE-RFRTITT-------AYYRGAMGIMLVYDIT 53 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~-~~~~~~~-------~~~~~~~~~ilv~d~~ 53 (83)
+|||||+.++....+. ....+.+|||+|+. .+..+.. ..++++|++++|+|.+
T Consensus 63 vGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~ 142 (339)
T PRK15494 63 SGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSL 142 (339)
T ss_pred CCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECC
Confidence 6999999998776552 23578899999984 3333222 3477999999999865
Q ss_pred ChhHHHHHH-HHHHHHHHhcCCCceEEEEeC
Q psy16649 54 NEKSFDNIK-NWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 54 ~~~s~~~~~-~w~~~~~~~~~~~~piilvgN 83 (83)
+ +|.++. .|++.+++. +.|.++|+|
T Consensus 143 ~--s~~~~~~~il~~l~~~---~~p~IlViN 168 (339)
T PRK15494 143 K--SFDDITHNILDKLRSL---NIVPIFLLN 168 (339)
T ss_pred C--CCCHHHHHHHHHHHhc---CCCEEEEEE
Confidence 4 666665 455555433 345567877
No 179
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.22 E-value=2.1e-11 Score=74.72 Aligned_cols=63 Identities=17% Similarity=0.177 Sum_probs=47.4
Q ss_pred eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
+.+++++|||+|+++|.......++.+|++|+|+|.++... ...+.+++.... .++|+++++|
T Consensus 69 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~-~~~~~i~~~~~~---~~~P~iivvN 131 (267)
T cd04169 69 RDCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVE-PQTRKLFEVCRL---RGIPIITFIN 131 (267)
T ss_pred CCEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCcc-HHHHHHHHHHHh---cCCCEEEEEE
Confidence 46899999999999998877888999999999999987533 223344433322 3678888887
No 180
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.21 E-value=1.8e-11 Score=81.77 Aligned_cols=77 Identities=14% Similarity=0.052 Sum_probs=54.2
Q ss_pred CCcceeeeeeccCccc------------------eEEEEEEEeCCCchhhhcc------hhhhcc--CCcEEEEEEECCC
Q psy16649 1 SGENLCTLQIFRGCFQ------------------HNFHINYRDTAGQERFRTI------TTAYYR--GAMGIMLVYDITN 54 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~------------------~~~~l~i~Dt~g~~~~~~~------~~~~~~--~~~~~ilv~d~~~ 54 (83)
+||||+++++....+. ...++++|||+|++++... ...|+. ++|+++.|+|.++
T Consensus 5 vGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~ 84 (591)
T TIGR00437 5 VGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASN 84 (591)
T ss_pred CCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCc
Confidence 7999999999766543 2246789999999887653 344443 7899999999987
Q ss_pred hhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 55 EKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 55 ~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
.+. ...+..++. ..+.|+++|+|
T Consensus 85 ler---~l~l~~ql~---~~~~PiIIVlN 107 (591)
T TIGR00437 85 LER---NLYLTLQLL---ELGIPMILALN 107 (591)
T ss_pred chh---hHHHHHHHH---hcCCCEEEEEe
Confidence 432 223333332 24789999998
No 181
>KOG0077|consensus
Probab=99.21 E-value=2.8e-11 Score=69.16 Aligned_cols=83 Identities=17% Similarity=0.249 Sum_probs=71.7
Q ss_pred CCcceeeeeeccCccc---------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ---------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWI 65 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~---------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~ 65 (83)
+|||+++..+..+... ..++++-+|.+|+..-+..|..|+-.++++++.+|.-+++.|.+.+.-+
T Consensus 31 AGKTTLLHMLKdDrl~qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er~~es~~el 110 (193)
T KOG0077|consen 31 AGKTTLLHMLKDDRLGQHVPTLHPTSEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQERFAESKKEL 110 (193)
T ss_pred CchhhHHHHHccccccccCCCcCCChHHheecCceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHH
Confidence 6999999998876655 6789999999999999999999999999999999999999999988766
Q ss_pred HHHHHhc-CCCceEEEEeC
Q psy16649 66 RNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 66 ~~~~~~~-~~~~piilvgN 83 (83)
+.+.... -..+|+++.||
T Consensus 111 d~ll~~e~la~vp~lilgn 129 (193)
T KOG0077|consen 111 DALLSDESLATVPFLILGN 129 (193)
T ss_pred HHHHhHHHHhcCcceeecc
Confidence 6664422 26899999887
No 182
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.21 E-value=3.2e-11 Score=73.80 Aligned_cols=78 Identities=15% Similarity=0.092 Sum_probs=55.8
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhh-h-------cchhhhccCCcEEEEEEECC
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERF-R-------TITTAYYRGAMGIMLVYDIT 53 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~-~-------~~~~~~~~~~~~~ilv~d~~ 53 (83)
+|||||++++....+. ....+.+|||+|.... . .....+++++|++++|+|.+
T Consensus 11 vGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~ 90 (270)
T TIGR00436 11 VGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSD 90 (270)
T ss_pred CCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECC
Confidence 6999999998876432 2246789999997432 1 12345678999999999999
Q ss_pred ChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 54 NEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 54 ~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
+..+.+ +.+.+.+.. .+.|+++|+|
T Consensus 91 ~~~~~~--~~i~~~l~~---~~~p~ilV~N 115 (270)
T TIGR00436 91 QWNGDG--EFVLTKLQN---LKRPVVLTRN 115 (270)
T ss_pred CCCchH--HHHHHHHHh---cCCCEEEEEE
Confidence 887765 444444433 3688899887
No 183
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.20 E-value=3.1e-11 Score=77.67 Aligned_cols=79 Identities=19% Similarity=0.114 Sum_probs=55.9
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcc----------h-hhhccCCcEEEEEE
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTI----------T-TAYYRGAMGIMLVY 50 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~----------~-~~~~~~~~~~ilv~ 50 (83)
+||||++.++...... ....+.+|||+|..++... + ..+++.+|++++|+
T Consensus 183 ~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~ 262 (429)
T TIGR03594 183 VGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVL 262 (429)
T ss_pred CCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEE
Confidence 6999999998754321 2236889999997544322 2 34788999999999
Q ss_pred ECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 51 DITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 51 d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
|.++..+.+..+ +...+.+ ...|+++|+|
T Consensus 263 D~~~~~~~~~~~-~~~~~~~---~~~~iiiv~N 291 (429)
T TIGR03594 263 DATEGITEQDLR-IAGLILE---AGKALVIVVN 291 (429)
T ss_pred ECCCCccHHHHH-HHHHHHH---cCCcEEEEEE
Confidence 999988877654 3333322 4688999987
No 184
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.19 E-value=3.7e-11 Score=80.31 Aligned_cols=63 Identities=17% Similarity=0.253 Sum_probs=50.2
Q ss_pred eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
+.+++++|||+|+++|......+++.+|++++|+|.++. .....+.|+..+.+ .++|.++|.|
T Consensus 62 ~~~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~---~~ip~IVviN 124 (594)
T TIGR01394 62 NGTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEG-PMPQTRFVLKKALE---LGLKPIVVIN 124 (594)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHH---CCCCEEEEEE
Confidence 457899999999999999999999999999999999763 34455666666654 3577788876
No 185
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.18 E-value=2.4e-11 Score=78.38 Aligned_cols=65 Identities=11% Similarity=0.032 Sum_probs=46.4
Q ss_pred eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHH--HHHHhcCCCceEEEEeC
Q psy16649 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIR--NIEENASANVEKMLLGN 83 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~--~~~~~~~~~~piilvgN 83 (83)
..+.+.+|||+|+++|.......++.+|++++|+|.++.+++... .+.+ .+.+.. ...|+++++|
T Consensus 83 ~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~-~t~~~~~~~~~~-~~~~iIVviN 149 (426)
T TIGR00483 83 DKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQP-QTREHAFLARTL-GINQLIVAIN 149 (426)
T ss_pred CCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCC-chHHHHHHHHHc-CCCeEEEEEE
Confidence 457899999999999877666678999999999999998754222 2211 222223 2457888887
No 186
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.18 E-value=3.9e-11 Score=64.94 Aligned_cols=75 Identities=13% Similarity=0.137 Sum_probs=60.0
Q ss_pred CCcceeeeeeccCccceEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEE
Q psy16649 1 SGENLCTLQIFRGCFQHNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKML 80 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piil 80 (83)
+|||+++.++..+.|.....+ -|.| +......+++.++++++||+.++++|++.+ |.+.+....+.++|.++
T Consensus 11 vGKt~l~~~~~~~~~~~~~~~---~t~~---~~~~~~~~~~s~~~~~~v~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~ 82 (124)
T smart00010 11 VGKVGKSARFVQFPFDYVPTV---FTIG---IDVYDPTSYESFDVVLQCWRVDDRDSADNK--NVPEVLVGNKSDLPILV 82 (124)
T ss_pred hhHHHHHHHHhcCCccccCce---ehhh---hhhccccccCCCCEEEEEEEccCHHHHHHH--hHHHHHhcCCCCCcEEE
Confidence 599999999988887654432 1222 666678889999999999999999999877 88888765557899999
Q ss_pred EeC
Q psy16649 81 LGN 83 (83)
Q Consensus 81 vgN 83 (83)
+||
T Consensus 83 ~~n 85 (124)
T smart00010 83 GGN 85 (124)
T ss_pred Eee
Confidence 886
No 187
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.17 E-value=6.6e-11 Score=78.95 Aligned_cols=76 Identities=13% Similarity=0.240 Sum_probs=57.2
Q ss_pred CCcceeeeeecc---Cccc------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCC---hh
Q psy16649 1 SGENLCTLQIFR---GCFQ------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITN---EK 56 (83)
Q Consensus 1 ~GKss~~~~~~~---~~~~------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~---~~ 56 (83)
+|||||+.++.. +.+. ....+.+||++|+++|......++.++|++++|+|.++ ++
T Consensus 11 ~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~~q 90 (581)
T TIGR00475 11 HGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQ 90 (581)
T ss_pred CCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCcHH
Confidence 699999999873 2221 12678999999999999888889999999999999998 56
Q ss_pred HHHHHHHHHHHHHHhcCCCce-EEEEeC
Q psy16649 57 SFDNIKNWIRNIEENASANVE-KMLLGN 83 (83)
Q Consensus 57 s~~~~~~w~~~~~~~~~~~~p-iilvgN 83 (83)
+++.+.. +.. .++| +++|+|
T Consensus 91 T~ehl~i----l~~---lgi~~iIVVlN 111 (581)
T TIGR00475 91 TGEHLAV----LDL---LGIPHTIVVIT 111 (581)
T ss_pred HHHHHHH----HHH---cCCCeEEEEEE
Confidence 6655431 221 2455 778776
No 188
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.17 E-value=4.2e-11 Score=66.39 Aligned_cols=79 Identities=14% Similarity=0.069 Sum_probs=57.6
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcc-------hhhhccCCcEEEEEEECC
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTI-------TTAYYRGAMGIMLVYDIT 53 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~-------~~~~~~~~~~~ilv~d~~ 53 (83)
|||||++.++...... ....+.+||++|...+... ...+++.+|++++++|.+
T Consensus 7 sGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~ 86 (163)
T cd00880 7 AGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDAD 86 (163)
T ss_pred CCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCC
Confidence 7999999987765332 1347899999998766433 345889999999999999
Q ss_pred ChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 54 NEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 54 ~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
+..+..... |..... ....|+++|.|
T Consensus 87 ~~~~~~~~~-~~~~~~---~~~~~~ivv~n 112 (163)
T cd00880 87 LRADEEEEK-LLELLR---ERGKPVLLVLN 112 (163)
T ss_pred CCCCHHHHH-HHHHHH---hcCCeEEEEEE
Confidence 988877665 333322 25788888876
No 189
>PRK10218 GTP-binding protein; Provisional
Probab=99.17 E-value=6.4e-11 Score=79.30 Aligned_cols=63 Identities=16% Similarity=0.183 Sum_probs=46.5
Q ss_pred eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
+.+++++|||+|+++|...+..+++.+|++|+|+|.++....+ .+.++..+.. .++|.+++.|
T Consensus 66 ~~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~q-t~~~l~~a~~---~gip~IVviN 128 (607)
T PRK10218 66 NDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQ-TRFVTKKAFA---YGLKPIVVIN 128 (607)
T ss_pred CCEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCccHH-HHHHHHHHHH---cCCCEEEEEE
Confidence 3578999999999999999999999999999999998753322 2333333332 3566677765
No 190
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.16 E-value=6.8e-11 Score=80.38 Aligned_cols=78 Identities=17% Similarity=0.112 Sum_probs=56.2
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchh--------hhcchhhhccCCcEEEEEEECC
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQER--------FRTITTAYYRGAMGIMLVYDIT 53 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~--------~~~~~~~~~~~~~~~ilv~d~~ 53 (83)
+|||||+.++...... ....+.+|||+|.+. +......+++.+|++++|+|.+
T Consensus 286 vGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~ 365 (712)
T PRK09518 286 VGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQ 365 (712)
T ss_pred CCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECC
Confidence 6999999999765421 235789999999763 3445567889999999999997
Q ss_pred ChhHHHHHH-HHHHHHHHhcCCCceEEEEeC
Q psy16649 54 NEKSFDNIK-NWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 54 ~~~s~~~~~-~w~~~~~~~~~~~~piilvgN 83 (83)
+. +.... .|.+.++. .+.|+++|+|
T Consensus 366 ~~--~~~~d~~i~~~Lr~---~~~pvIlV~N 391 (712)
T PRK09518 366 VG--LTSTDERIVRMLRR---AGKPVVLAVN 391 (712)
T ss_pred CC--CCHHHHHHHHHHHh---cCCCEEEEEE
Confidence 63 22232 45555543 5789999987
No 191
>PRK13351 elongation factor G; Reviewed
Probab=99.16 E-value=8e-11 Score=79.74 Aligned_cols=63 Identities=21% Similarity=0.307 Sum_probs=51.7
Q ss_pred eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
...++++|||+|+.+|...+..+++.+|++++|+|.++..+.+....|. .+.. .++|+++++|
T Consensus 71 ~~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~-~~~~---~~~p~iiviN 133 (687)
T PRK13351 71 DNHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWR-QADR---YGIPRLIFIN 133 (687)
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHh---cCCCEEEEEE
Confidence 4678999999999999999999999999999999999887777655553 3332 3688888887
No 192
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.15 E-value=8e-11 Score=80.05 Aligned_cols=79 Identities=18% Similarity=0.134 Sum_probs=57.2
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCc----------hhhhcch-hhhccCCcEEEEEE
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQ----------ERFRTIT-TAYYRGAMGIMLVY 50 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~----------~~~~~~~-~~~~~~~~~~ilv~ 50 (83)
+|||||+.++...... ....+.+|||+|. +.|..++ ...++.+|++++|+
T Consensus 461 vGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilVi 540 (712)
T PRK09518 461 VGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLF 540 (712)
T ss_pred CCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEE
Confidence 6999999998876531 2235679999995 3344333 34578999999999
Q ss_pred ECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 51 DITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 51 d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
|.++..+++.++-| ..+.+ .+.|+++|+|
T Consensus 541 Dat~~~s~~~~~i~-~~~~~---~~~piIiV~N 569 (712)
T PRK09518 541 DASQPISEQDLKVM-SMAVD---AGRALVLVFN 569 (712)
T ss_pred ECCCCCCHHHHHHH-HHHHH---cCCCEEEEEE
Confidence 99999888887643 33332 4689999987
No 193
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.15 E-value=8.6e-11 Score=68.49 Aligned_cols=62 Identities=18% Similarity=0.123 Sum_probs=41.0
Q ss_pred EEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 18 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
.+.+.+|||+|+..+........+.+|++++|+|.++..+.+..+.|. +.... ..|+++++|
T Consensus 67 ~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~~--~~~~iiv~N 128 (192)
T cd01889 67 NLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEIL--CKKLIVVLN 128 (192)
T ss_pred CceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHHc--CCCEEEEEE
Confidence 578899999999765433334456789999999998855444433332 12222 468888876
No 194
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.13 E-value=1.3e-10 Score=74.77 Aligned_cols=79 Identities=14% Similarity=0.074 Sum_probs=55.9
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCc--------hhhhcchhhhccCCcEEEEEEECC
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQ--------ERFRTITTAYYRGAMGIMLVYDIT 53 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~--------~~~~~~~~~~~~~~~~~ilv~d~~ 53 (83)
+|||||..++..+... ....+.+|||+|. +.+......+++.+|++++|+|.+
T Consensus 10 vGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~ 89 (429)
T TIGR03594 10 VGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGR 89 (429)
T ss_pred CCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCC
Confidence 6999999998765421 2346899999995 455666777899999999999998
Q ss_pred ChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 54 NEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 54 ~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
+..+.... .+.+.+++ .+.|+++|+|
T Consensus 90 ~~~~~~d~-~i~~~l~~---~~~piilVvN 115 (429)
T TIGR03594 90 EGLTPEDE-EIAKWLRK---SGKPVILVAN 115 (429)
T ss_pred CCCCHHHH-HHHHHHHH---hCCCEEEEEE
Confidence 75443321 22222332 3578999887
No 195
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.13 E-value=3.7e-11 Score=68.39 Aligned_cols=75 Identities=11% Similarity=0.149 Sum_probs=49.6
Q ss_pred CCcceeeeeeccCccc-----eEEEE---EEEeCCCc-----hhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ-----HNFHI---NYRDTAGQ-----ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRN 67 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-----~~~~l---~i~Dt~g~-----~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~ 67 (83)
+||||++.++. +.+. ..+.+ .+|||+|+ +.++.+. ..++++|++++|+|.++.+++. ..|+.+
T Consensus 12 ~GKstl~~~l~-~~~~~~~~~~~v~~~~~~~iDtpG~~~~~~~~~~~~~-~~~~~ad~il~v~d~~~~~s~~--~~~~~~ 87 (158)
T PRK15467 12 AGKTTLFNALQ-GNYTLARKTQAVEFNDKGDIDTPGEYFSHPRWYHALI-TTLQDVDMLIYVHGANDPESRL--PAGLLD 87 (158)
T ss_pred CCHHHHHHHHc-CCCccCccceEEEECCCCcccCCccccCCHHHHHHHH-HHHhcCCEEEEEEeCCCccccc--CHHHHh
Confidence 69999999855 4332 11111 26999997 3333333 3478999999999999998763 345444
Q ss_pred HHHhcCCCceEEEEeC
Q psy16649 68 IEENASANVEKMLLGN 83 (83)
Q Consensus 68 ~~~~~~~~~piilvgN 83 (83)
+ ....|+++++|
T Consensus 88 ~----~~~~~ii~v~n 99 (158)
T PRK15467 88 I----GVSKRQIAVIS 99 (158)
T ss_pred c----cCCCCeEEEEE
Confidence 3 13567888876
No 196
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.12 E-value=5.3e-10 Score=64.70 Aligned_cols=64 Identities=22% Similarity=0.349 Sum_probs=53.3
Q ss_pred eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
....+.++||+||+||..+|..+.+++.+.|++.|.+....| .....++.+.... .+|+++..|
T Consensus 66 ~~~~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~--~ip~vVa~N 129 (187)
T COG2229 66 EDTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN--PIPVVVAIN 129 (187)
T ss_pred CcceEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc--CCCEEEEee
Confidence 457899999999999999999999999999999999999999 4455555554433 389888876
No 197
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.11 E-value=2.6e-10 Score=64.47 Aligned_cols=79 Identities=19% Similarity=0.122 Sum_probs=53.4
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhh----------hcc-hhhhccCCcEEEEEE
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERF----------RTI-TTAYYRGAMGIMLVY 50 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~----------~~~-~~~~~~~~~~~ilv~ 50 (83)
+||||++.++....+. ....+.+|||+|..+. ... ....++++|++++|+
T Consensus 13 ~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~ 92 (174)
T cd01895 13 VGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVI 92 (174)
T ss_pred CCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEE
Confidence 6999999998665421 2245789999996432 111 123567999999999
Q ss_pred ECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 51 DITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 51 d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
|.+++.+..... +...+.. .+.|+++++|
T Consensus 93 d~~~~~~~~~~~-~~~~~~~---~~~~~iiv~n 121 (174)
T cd01895 93 DATEGITEQDLR-IAGLILE---EGKALVIVVN 121 (174)
T ss_pred eCCCCcchhHHH-HHHHHHh---cCCCEEEEEe
Confidence 999988866543 3333322 3578888876
No 198
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.10 E-value=1.3e-10 Score=69.95 Aligned_cols=79 Identities=16% Similarity=0.308 Sum_probs=53.1
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhc-----chhhhccCCcEEEEEEECCCh
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRT-----ITTAYYRGAMGIMLVYDITNE 55 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~-----~~~~~~~~~~~~ilv~d~~~~ 55 (83)
|||||+...+..+.-+ ..+.+++||.+||..+.. .....++++.++|+|+|+.+.
T Consensus 10 SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~ 89 (232)
T PF04670_consen 10 SGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSD 89 (232)
T ss_dssp SSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-S
T ss_pred CChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEEEEEEEcccc
Confidence 7999988877766544 456899999999976533 467889999999999999966
Q ss_pred hHHHHH---HHHHHHHHHhcCCCceEEE
Q psy16649 56 KSFDNI---KNWIRNIEENASANVEKML 80 (83)
Q Consensus 56 ~s~~~~---~~w~~~~~~~~~~~~piil 80 (83)
+-.+++ ...++.+.+.. |++.+-+
T Consensus 90 ~~~~~l~~~~~~i~~l~~~s-p~~~v~v 116 (232)
T PF04670_consen 90 DYDEDLAYLSDCIEALRQYS-PNIKVFV 116 (232)
T ss_dssp TCHHHHHHHHHHHHHHHHHS-TT-EEEE
T ss_pred cHHHHHHHHHHHHHHHHHhC-CCCeEEE
Confidence 544444 44555555555 5655544
No 199
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.10 E-value=3.4e-10 Score=67.78 Aligned_cols=62 Identities=23% Similarity=0.241 Sum_probs=48.9
Q ss_pred EEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 18 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
.+.+++|||+|+++|......+++.+|++++|+|+++..+.+....|. ... ...+|+++++|
T Consensus 72 ~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~-~~~---~~~~p~ilviN 133 (222)
T cd01885 72 EYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLR-QAL---KERVKPVLVIN 133 (222)
T ss_pred ceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHH-HHH---HcCCCEEEEEE
Confidence 688999999999999999999999999999999999876655432222 222 23578888887
No 200
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.07 E-value=2.8e-10 Score=65.68 Aligned_cols=79 Identities=14% Similarity=0.230 Sum_probs=52.9
Q ss_pred CCcceeeeeeccCccc-------------eEE----EEEEEeCCCc----------hhhhcchhhhccC---CcEEEEEE
Q psy16649 1 SGENLCTLQIFRGCFQ-------------HNF----HINYRDTAGQ----------ERFRTITTAYYRG---AMGIMLVY 50 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------~~~----~l~i~Dt~g~----------~~~~~~~~~~~~~---~~~~ilv~ 50 (83)
+||||++.++....+. ..+ .+.+|||+|. +.+..+...|++. ++++++|+
T Consensus 29 ~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vv 108 (179)
T TIGR03598 29 VGKSSLINALTNRKKLARTSKTPGRTQLINFFEVNDGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLM 108 (179)
T ss_pred CCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCCcEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEe
Confidence 6999999998766421 111 3689999994 3455555667764 57999999
Q ss_pred ECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 51 DITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 51 d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
|.+++-+....+ +...+.. ...|+++++|
T Consensus 109 d~~~~~~~~~~~-~~~~~~~---~~~pviiv~n 137 (179)
T TIGR03598 109 DIRHPLKELDLE-MLEWLRE---RGIPVLIVLT 137 (179)
T ss_pred cCCCCCCHHHHH-HHHHHHH---cCCCEEEEEE
Confidence 998865555543 2233322 3678888876
No 201
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.03 E-value=5.3e-10 Score=62.63 Aligned_cols=78 Identities=12% Similarity=0.126 Sum_probs=51.5
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhh--------cchhhhccCCcEEEEEEECC
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFR--------TITTAYYRGAMGIMLVYDIT 53 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~--------~~~~~~~~~~~~~ilv~d~~ 53 (83)
+||||++.++...... ..+.+.+|||+|..... .....++..+|++++|+|.+
T Consensus 14 ~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~ 93 (168)
T cd04163 14 VGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDAS 93 (168)
T ss_pred CCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECC
Confidence 7999999887654321 23578899999965432 23455688999999999999
Q ss_pred ChhHHHHHH-HHHHHHHHhcCCCceEEEEeC
Q psy16649 54 NEKSFDNIK-NWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 54 ~~~s~~~~~-~w~~~~~~~~~~~~piilvgN 83 (83)
+.. .... .+.+.+.+. ..|+++|+|
T Consensus 94 ~~~--~~~~~~~~~~~~~~---~~~~iiv~n 119 (168)
T cd04163 94 EPI--GEGDEFILELLKKS---KTPVILVLN 119 (168)
T ss_pred Ccc--CchHHHHHHHHHHh---CCCEEEEEE
Confidence 872 2222 233333322 577788776
No 202
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.03 E-value=4.9e-10 Score=74.13 Aligned_cols=63 Identities=17% Similarity=0.180 Sum_probs=47.4
Q ss_pred eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
+.+++++|||+|+++|......+++.+|++|+|+|.++.-. ...+.+++..+. .++|++++.|
T Consensus 77 ~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~---~~iPiiv~iN 139 (526)
T PRK00741 77 RDCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVE-PQTRKLMEVCRL---RDTPIFTFIN 139 (526)
T ss_pred CCEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCC-HHHHHHHHHHHh---cCCCEEEEEE
Confidence 35789999999999998877888999999999999987532 123344433322 4688888887
No 203
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.02 E-value=6.6e-10 Score=73.00 Aligned_cols=83 Identities=11% Similarity=0.099 Sum_probs=57.0
Q ss_pred CCcceeeeeeccCccc------------------eEEEEEEEeCCCch----hhhcch---hhhccCCcEEEEEEECCC-
Q psy16649 1 SGENLCTLQIFRGCFQ------------------HNFHINYRDTAGQE----RFRTIT---TAYYRGAMGIMLVYDITN- 54 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~------------------~~~~l~i~Dt~g~~----~~~~~~---~~~~~~~~~~ilv~d~~~- 54 (83)
+|||||+.++...... ....+.+||++|.- ....+. -.++..++++++|+|+++
T Consensus 170 AGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~ 249 (500)
T PRK12296 170 AGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATL 249 (500)
T ss_pred CCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCccc
Confidence 7999999998643211 33578999999952 112222 224567999999999986
Q ss_pred ---hhHHHHHHHHHHHHHHhcC-----------CCceEEEEeC
Q psy16649 55 ---EKSFDNIKNWIRNIEENAS-----------ANVEKMLLGN 83 (83)
Q Consensus 55 ---~~s~~~~~~w~~~~~~~~~-----------~~~piilvgN 83 (83)
++.++++..|.+++..+.. ...|+++|+|
T Consensus 250 e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlN 292 (500)
T PRK12296 250 EPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLN 292 (500)
T ss_pred ccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEE
Confidence 3467777777777765432 3678999987
No 204
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.02 E-value=1.1e-10 Score=67.99 Aligned_cols=83 Identities=20% Similarity=0.366 Sum_probs=56.4
Q ss_pred CCcceeeeeeccCccc-----------------eEEEEEEEeCCCchhhhcc-hhh--hccCCcEEEEEEECCC-hhHHH
Q psy16649 1 SGENLCTLQIFRGCFQ-----------------HNFHINYRDTAGQERFRTI-TTA--YYRGAMGIMLVYDITN-EKSFD 59 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-----------------~~~~l~i~Dt~g~~~~~~~-~~~--~~~~~~~~ilv~d~~~-~~s~~ 59 (83)
||||+|..++..+.+. ..-.+.+.|++|+++.+.. ... +...+.++|+|.|.+. +..+.
T Consensus 14 SGKTaLf~~L~~~~~~~T~tS~e~n~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~ 93 (181)
T PF09439_consen 14 SGKTALFSQLVNGKTVPTVTSMENNIAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTDQKELR 93 (181)
T ss_dssp SSHHHHHHHHHHSS---B---SSEEEECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTHHHHHH
T ss_pred CCHHHHHHHHhcCCcCCeeccccCCceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccchhhHH
Confidence 7999999999888764 2236789999999998763 333 5889999999999874 44556
Q ss_pred HHHHHHHHH-HHh--cCCCceEEEEeC
Q psy16649 60 NIKNWIRNI-EEN--ASANVEKMLLGN 83 (83)
Q Consensus 60 ~~~~w~~~~-~~~--~~~~~piilvgN 83 (83)
++-+.+-.+ ... ....+|++|+.|
T Consensus 94 ~~Ae~Ly~iL~~~~~~~~~~piLIacN 120 (181)
T PF09439_consen 94 DVAEYLYDILSDTEVQKNKPPILIACN 120 (181)
T ss_dssp HHHHHHHHHHHHHHCCTT--EEEEEEE
T ss_pred HHHHHHHHHHHhhhhccCCCCEEEEEe
Confidence 555444344 332 246899999887
No 205
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.00 E-value=5.1e-10 Score=72.28 Aligned_cols=65 Identities=11% Similarity=0.040 Sum_probs=42.8
Q ss_pred eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHH-HHHHHHHHHhcCCCceEEEEeC
Q psy16649 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI-KNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~-~~w~~~~~~~~~~~~piilvgN 83 (83)
..+++.+|||+|+++|.......++.+|++++|+|.+++.++... ..++..+. .. ...|+++++|
T Consensus 82 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~-~~-~~~~iivviN 147 (425)
T PRK12317 82 DKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLAR-TL-GINQLIVAIN 147 (425)
T ss_pred CCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHH-Hc-CCCeEEEEEE
Confidence 467899999999998866555557899999999999874222222 22222222 22 2346777776
No 206
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.00 E-value=9.1e-10 Score=63.97 Aligned_cols=79 Identities=14% Similarity=0.210 Sum_probs=52.0
Q ss_pred CCcceeeeeeccCccc-----------------eEEEEEEEeCCC----------chhhhcchhhhccCC---cEEEEEE
Q psy16649 1 SGENLCTLQIFRGCFQ-----------------HNFHINYRDTAG----------QERFRTITTAYYRGA---MGIMLVY 50 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-----------------~~~~l~i~Dt~g----------~~~~~~~~~~~~~~~---~~~ilv~ 50 (83)
+||||++.++..+.+. ....+.+|||+| ++++..+...|++.+ +++++++
T Consensus 35 ~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 114 (196)
T PRK00454 35 VGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLI 114 (196)
T ss_pred CCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEE
Confidence 6999999999876532 124688999999 456666777777765 5677888
Q ss_pred ECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 51 DITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 51 d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
|.+++.+.... .+.+.+. . ...|+++++|
T Consensus 115 d~~~~~~~~~~-~i~~~l~-~--~~~~~iiv~n 143 (196)
T PRK00454 115 DSRHPLKELDL-QMIEWLK-E--YGIPVLIVLT 143 (196)
T ss_pred ecCCCCCHHHH-HHHHHHH-H--cCCcEEEEEE
Confidence 88776544331 1112222 1 3577787776
No 207
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=98.98 E-value=5.2e-09 Score=65.57 Aligned_cols=67 Identities=19% Similarity=0.241 Sum_probs=53.9
Q ss_pred eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCCh----------hHHHHHHHHHHHHHHhc-CCCceEEEEeC
Q psy16649 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNE----------KSFDNIKNWIRNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~----------~s~~~~~~w~~~~~~~~-~~~~piilvgN 83 (83)
..+.+.+||++||...+..|..|+.+++++++|.|+++- +.+++....++.+-... -.+.|++|++|
T Consensus 159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~N 236 (317)
T cd00066 159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLN 236 (317)
T ss_pred cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEcc
Confidence 568899999999999999999999999999999999974 45555555555554432 15799999987
No 208
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=98.97 E-value=1.5e-09 Score=69.64 Aligned_cols=83 Identities=13% Similarity=0.107 Sum_probs=59.7
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhh----cc---hhhhccCCcEEEEEEECC-
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFR----TI---TTAYYRGAMGIMLVYDIT- 53 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~----~~---~~~~~~~~~~~ilv~d~~- 53 (83)
+|||||+.++...... ....+.++||+|.-+-. .+ .-..+..++++++|+|++
T Consensus 170 aGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~ 249 (390)
T PRK12298 170 AGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAP 249 (390)
T ss_pred CCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCc
Confidence 6999999998753221 12358999999964211 01 123577899999999998
Q ss_pred --ChhHHHHHHHHHHHHHHhcC--CCceEEEEeC
Q psy16649 54 --NEKSFDNIKNWIRNIEENAS--ANVEKMLLGN 83 (83)
Q Consensus 54 --~~~s~~~~~~w~~~~~~~~~--~~~piilvgN 83 (83)
+++.++++..|.+++..... .+.|+++|.|
T Consensus 250 ~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlN 283 (390)
T PRK12298 250 IDGSDPVENARIIINELEKYSPKLAEKPRWLVFN 283 (390)
T ss_pred ccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEe
Confidence 56788888999988887542 3578888877
No 209
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.97 E-value=1.3e-09 Score=72.18 Aligned_cols=63 Identities=16% Similarity=0.161 Sum_probs=47.0
Q ss_pred eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
+.+++++|||+|+++|.......++.+|++|+|+|.++.- ....+.+++..+. .++|+++++|
T Consensus 78 ~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv-~~~t~~l~~~~~~---~~~PiivviN 140 (527)
T TIGR00503 78 RDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGV-ETRTRKLMEVTRL---RDTPIFTFMN 140 (527)
T ss_pred CCeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCC-CHHHHHHHHHHHh---cCCCEEEEEE
Confidence 4678999999999999887777899999999999998731 1223444443332 4688888887
No 210
>PRK00089 era GTPase Era; Reviewed
Probab=98.97 E-value=1.1e-09 Score=67.61 Aligned_cols=78 Identities=12% Similarity=0.172 Sum_probs=51.5
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhh--------hcchhhhccCCcEEEEEEECC
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERF--------RTITTAYYRGAMGIMLVYDIT 53 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~--------~~~~~~~~~~~~~~ilv~d~~ 53 (83)
+|||||+.++...... ....+.+|||+|.... .......+..+|++++|+|.+
T Consensus 16 ~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~ 95 (292)
T PRK00089 16 VGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDAD 95 (292)
T ss_pred CCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCC
Confidence 7999999988654331 2267899999996432 223345678999999999998
Q ss_pred ChhHHHHHHHH-HHHHHHhcCCCceEEEEeC
Q psy16649 54 NEKSFDNIKNW-IRNIEENASANVEKMLLGN 83 (83)
Q Consensus 54 ~~~s~~~~~~w-~~~~~~~~~~~~piilvgN 83 (83)
+. +.....+ .+.+. ..+.|+++|+|
T Consensus 96 ~~--~~~~~~~i~~~l~---~~~~pvilVlN 121 (292)
T PRK00089 96 EK--IGPGDEFILEKLK---KVKTPVILVLN 121 (292)
T ss_pred CC--CChhHHHHHHHHh---hcCCCEEEEEE
Confidence 82 2222222 22232 24688888887
No 211
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.96 E-value=1.7e-09 Score=66.16 Aligned_cols=63 Identities=25% Similarity=0.314 Sum_probs=47.6
Q ss_pred eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
...++.+|||+|+.++.......++.+|++++|+|.++.........|. .+.. .++|.+++.|
T Consensus 62 ~~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~-~~~~---~~~p~iivvN 124 (268)
T cd04170 62 KGHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTEKLWE-FADE---AGIPRIIFIN 124 (268)
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHH-HHHH---cCCCEEEEEE
Confidence 3468899999999998888888999999999999999876554444342 2322 3577887776
No 212
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.95 E-value=2e-09 Score=69.59 Aligned_cols=79 Identities=18% Similarity=0.132 Sum_probs=53.7
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCch----------hhhcch-hhhccCCcEEEEEE
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQE----------RFRTIT-TAYYRGAMGIMLVY 50 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~----------~~~~~~-~~~~~~~~~~ilv~ 50 (83)
+||||++.++...... ....+.+|||+|.. .|...+ ..+++.+|++++|+
T Consensus 184 ~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilVi 263 (435)
T PRK00093 184 VGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVI 263 (435)
T ss_pred CCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEE
Confidence 6999999887644310 23467899999953 333222 24778999999999
Q ss_pred ECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 51 DITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 51 d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
|.++..+.+..+ +...+.+ ...|+++|+|
T Consensus 264 D~~~~~~~~~~~-i~~~~~~---~~~~~ivv~N 292 (435)
T PRK00093 264 DATEGITEQDLR-IAGLALE---AGRALVIVVN 292 (435)
T ss_pred eCCCCCCHHHHH-HHHHHHH---cCCcEEEEEE
Confidence 999987776653 3333332 3578888877
No 213
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.95 E-value=1.6e-09 Score=65.26 Aligned_cols=67 Identities=16% Similarity=0.087 Sum_probs=47.1
Q ss_pred CCcceeeeeeccCccc------------------eEEEEEEEeCCCchhhh-------cchhhhccCCcEEEEEEECCCh
Q psy16649 1 SGENLCTLQIFRGCFQ------------------HNFHINYRDTAGQERFR-------TITTAYYRGAMGIMLVYDITNE 55 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~------------------~~~~l~i~Dt~g~~~~~-------~~~~~~~~~~~~~ilv~d~~~~ 55 (83)
||||||+.++...... ....+++||++|+.+.. .....+++++|++++|+|.+++
T Consensus 11 ~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~~ 90 (233)
T cd01896 11 VGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLDATKP 90 (233)
T ss_pred CCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEEEEEecCCcc
Confidence 7999999988764421 34678999999975432 1234578999999999999886
Q ss_pred h-HHHHHHHHHHH
Q psy16649 56 K-SFDNIKNWIRN 67 (83)
Q Consensus 56 ~-s~~~~~~w~~~ 67 (83)
+ ..+.+.+.++.
T Consensus 91 ~~~~~~~~~~l~~ 103 (233)
T cd01896 91 EGHREILERELEG 103 (233)
T ss_pred hhHHHHHHHHHHH
Confidence 6 44444444433
No 214
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=98.91 E-value=1.6e-08 Score=64.06 Aligned_cols=67 Identities=16% Similarity=0.207 Sum_probs=53.3
Q ss_pred eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCCh----------hHHHHHHHHHHHHHHhc-CCCceEEEEeC
Q psy16649 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNE----------KSFDNIKNWIRNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~----------~s~~~~~~w~~~~~~~~-~~~~piilvgN 83 (83)
..+++.+||.+||...+..|..|+.+++++|+|.|+++- ..+++....++.+.... -.++|++|++|
T Consensus 182 ~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~N 259 (342)
T smart00275 182 KKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLN 259 (342)
T ss_pred CCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEe
Confidence 457789999999999999999999999999999999973 45555555555554422 25799999987
No 215
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.87 E-value=7.6e-09 Score=58.08 Aligned_cols=77 Identities=13% Similarity=0.255 Sum_probs=50.1
Q ss_pred CCcceeeeeeccCccce-----------------EEEEEEEeCCC----------chhhhcchhhhccC---CcEEEEEE
Q psy16649 1 SGENLCTLQIFRGCFQH-----------------NFHINYRDTAG----------QERFRTITTAYYRG---AMGIMLVY 50 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~~-----------------~~~l~i~Dt~g----------~~~~~~~~~~~~~~---~~~~ilv~ 50 (83)
+|||||+..+..+.+.. .-.+.+|||+| ++.+......|++. .+++++++
T Consensus 10 ~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 89 (170)
T cd01876 10 VGKSSLINALTNRKKLARTSKTPGKTQLINFFNVNDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLI 89 (170)
T ss_pred CCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccCeEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEE
Confidence 79999999998544331 11577899998 34455666666664 46788899
Q ss_pred ECCChhH--HHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 51 DITNEKS--FDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 51 d~~~~~s--~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
|.++..+ ...+.+|+... ..|+++|+|
T Consensus 90 d~~~~~~~~~~~~~~~l~~~------~~~vi~v~n 118 (170)
T cd01876 90 DSRHGPTEIDLEMLDWLEEL------GIPFLVVLT 118 (170)
T ss_pred EcCcCCCHhHHHHHHHHHHc------CCCEEEEEE
Confidence 9886632 23344554432 477777765
No 216
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.83 E-value=6.6e-09 Score=66.94 Aligned_cols=37 Identities=16% Similarity=0.191 Sum_probs=33.1
Q ss_pred EEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCCh
Q psy16649 19 FHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNE 55 (83)
Q Consensus 19 ~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 55 (83)
..+.+|||+|+++|...+......+|++++|+|.++.
T Consensus 80 ~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g 116 (406)
T TIGR03680 80 RRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEP 116 (406)
T ss_pred cEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCC
Confidence 5789999999999988888888899999999999853
No 217
>PRK12740 elongation factor G; Reviewed
Probab=98.80 E-value=9.8e-09 Score=69.56 Aligned_cols=63 Identities=21% Similarity=0.233 Sum_probs=49.1
Q ss_pred eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
..+.+.+|||+|+.++...+...++.+|++++++|.+...+.+....|. .+.. .++|+++|.|
T Consensus 58 ~~~~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~-~~~~---~~~p~iiv~N 120 (668)
T PRK12740 58 KGHKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWR-QAEK---YGVPRIIFVN 120 (668)
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHH-HHHH---cCCCEEEEEE
Confidence 4678999999999998888888999999999999999876665544443 2322 3578888876
No 218
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.80 E-value=1.1e-08 Score=62.15 Aligned_cols=51 Identities=20% Similarity=0.283 Sum_probs=45.5
Q ss_pred hhhhcchhhhccCCcEEEEEEECCChh-HHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 30 ERFRTITTAYYRGAMGIMLVYDITNEK-SFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 30 ~~~~~~~~~~~~~~~~~ilv~d~~~~~-s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
|+|..+.+.+++++|++++|||+++++ ||+.+.+|+..+.. .++|++||+|
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~N 75 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLN 75 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEE
Confidence 788999999999999999999999887 89999999976643 5789999987
No 219
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.80 E-value=8.9e-09 Score=70.06 Aligned_cols=63 Identities=22% Similarity=0.271 Sum_probs=48.1
Q ss_pred eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
...++.+|||+|+.++.......++.+|++++|+|.++....+...-| ..+++ .++|+++++|
T Consensus 73 ~~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~---~~~p~ivviN 135 (689)
T TIGR00484 73 KGHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVW-RQANR---YEVPRIAFVN 135 (689)
T ss_pred CCeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHH-HHHHH---cCCCEEEEEE
Confidence 357899999999999888888999999999999999886555443333 23332 3578888887
No 220
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.77 E-value=2.5e-08 Score=67.24 Aligned_cols=61 Identities=16% Similarity=0.211 Sum_probs=46.2
Q ss_pred CCcceeeeeecc---Cccc-------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCC---h
Q psy16649 1 SGENLCTLQIFR---GCFQ-------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITN---E 55 (83)
Q Consensus 1 ~GKss~~~~~~~---~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~---~ 55 (83)
+|||||+.++.. +.+. ....+.+|||+|+++|.......+.++|++++|+|.++ +
T Consensus 11 hGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~~ 90 (614)
T PRK10512 11 HGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMA 90 (614)
T ss_pred CCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCCCcH
Confidence 599999998862 2221 12457899999999997777777899999999999887 4
Q ss_pred hHHHHH
Q psy16649 56 KSFDNI 61 (83)
Q Consensus 56 ~s~~~~ 61 (83)
++.+.+
T Consensus 91 qT~ehl 96 (614)
T PRK10512 91 QTREHL 96 (614)
T ss_pred HHHHHH
Confidence 554444
No 221
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.77 E-value=9.5e-09 Score=70.22 Aligned_cols=62 Identities=23% Similarity=0.177 Sum_probs=43.7
Q ss_pred EEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 18 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
.+.+.+|||+|+.+|.......++.+|++++|+|..+.-.-+....|. .+. ..+.|++++.|
T Consensus 85 ~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~-~~~---~~~~p~ivviN 146 (720)
T TIGR00490 85 EYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLR-QAL---KENVKPVLFIN 146 (720)
T ss_pred ceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHH-HHH---HcCCCEEEEEE
Confidence 578999999999999888888999999999999987732222222222 121 13456677766
No 222
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.76 E-value=1.8e-08 Score=69.30 Aligned_cols=77 Identities=18% Similarity=0.135 Sum_probs=53.8
Q ss_pred CCcceeeeeeccCccc------------------eEEEEEEEeCCCchhhhcc----------hhhhc--cCCcEEEEEE
Q psy16649 1 SGENLCTLQIFRGCFQ------------------HNFHINYRDTAGQERFRTI----------TTAYY--RGAMGIMLVY 50 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~------------------~~~~l~i~Dt~g~~~~~~~----------~~~~~--~~~~~~ilv~ 50 (83)
|||||+.+++...... ...++++|||+|..++... ...++ ..+|++++|+
T Consensus 14 vGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~Vv 93 (772)
T PRK09554 14 SGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVV 93 (772)
T ss_pred CCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEe
Confidence 7999999998754321 3457899999999876432 22343 4899999999
Q ss_pred ECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 51 DITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 51 d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
|.++.+. ...|..++.+ .+.|++++.|
T Consensus 94 Dat~ler---~l~l~~ql~e---~giPvIvVlN 120 (772)
T PRK09554 94 DASNLER---NLYLTLQLLE---LGIPCIVALN 120 (772)
T ss_pred cCCcchh---hHHHHHHHHH---cCCCEEEEEE
Confidence 9988654 2335555544 3588888877
No 223
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.75 E-value=1.7e-08 Score=58.69 Aligned_cols=62 Identities=23% Similarity=0.229 Sum_probs=43.6
Q ss_pred EEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 18 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
...+.+.||+|+++|......-.+.+|++|+|.|..+.-.-+. ...+..+.. .++|++++-|
T Consensus 69 ~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~-~~~l~~~~~---~~~p~ivvlN 130 (188)
T PF00009_consen 69 NRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQT-EEHLKILRE---LGIPIIVVLN 130 (188)
T ss_dssp SEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHH-HHHHHHHHH---TT-SEEEEEE
T ss_pred ccceeecccccccceeecccceecccccceeeeeccccccccc-ccccccccc---cccceEEeee
Confidence 4689999999999998888888999999999999986533222 222223322 3566666654
No 224
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.74 E-value=2.7e-08 Score=61.15 Aligned_cols=63 Identities=22% Similarity=0.254 Sum_probs=45.2
Q ss_pred eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
...++.++||+|+.++...+...++.+|++++|.|..+...-+ ....++.+.. .+.|++++.|
T Consensus 62 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~-t~~~~~~~~~---~~~p~ivviN 124 (270)
T cd01886 62 KDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQ-TETVWRQADR---YNVPRIAFVN 124 (270)
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHH-HHHHHHHHHH---cCCCEEEEEE
Confidence 3478899999999999888899999999999999987642211 1233333332 3467777765
No 225
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.74 E-value=1.5e-08 Score=59.53 Aligned_cols=76 Identities=7% Similarity=0.054 Sum_probs=48.6
Q ss_pred CCcceeeeeeccCccc----------------eEE------EEEEEeCCCchhhhcch-----hhhccCCcEEEEEEECC
Q psy16649 1 SGENLCTLQIFRGCFQ----------------HNF------HINYRDTAGQERFRTIT-----TAYYRGAMGIMLVYDIT 53 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~----------------~~~------~l~i~Dt~g~~~~~~~~-----~~~~~~~~~~ilv~d~~ 53 (83)
+||||+++.+....+. ..+ .+.+|||+|........ ...+.++|.++++-+
T Consensus 12 ~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~-- 89 (197)
T cd04104 12 AGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISS-- 89 (197)
T ss_pred CCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeC--
Confidence 6999999988663321 112 68899999975432222 233678898888732
Q ss_pred ChhHHHHHH-HHHHHHHHhcCCCceEEEEeC
Q psy16649 54 NEKSFDNIK-NWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 54 ~~~s~~~~~-~w~~~~~~~~~~~~piilvgN 83 (83)
++|.+.+ .|++.+++. ..|+++|+|
T Consensus 90 --~~~~~~d~~~~~~l~~~---~~~~ilV~n 115 (197)
T cd04104 90 --TRFSSNDVKLAKAIQCM---GKKFYFVRT 115 (197)
T ss_pred --CCCCHHHHHHHHHHHHh---CCCEEEEEe
Confidence 3455554 566666654 467788876
No 226
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.74 E-value=6.3e-08 Score=52.25 Aligned_cols=77 Identities=19% Similarity=0.202 Sum_probs=48.9
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchh----------hhcchhhhccCCcEEEEEEE
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQER----------FRTITTAYYRGAMGIMLVYD 51 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~----------~~~~~~~~~~~~~~~ilv~d 51 (83)
+||||++..+...... ....+.++||+|-.. +...... +..+|++++|+|
T Consensus 10 ~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~-~~~~d~ii~vv~ 88 (116)
T PF01926_consen 10 VGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQ-ISKSDLIIYVVD 88 (116)
T ss_dssp SSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHH-HCTESEEEEEEE
T ss_pred CCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHH-HHHCCEEEEEEE
Confidence 6999999998864321 123567999999532 1123333 389999999999
Q ss_pred CCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 52 ITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 52 ~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
.+++.. +...+.+++++ .+.|+++|-|
T Consensus 89 ~~~~~~-~~~~~~~~~l~----~~~~~i~v~N 115 (116)
T PF01926_consen 89 ASNPIT-EDDKNILRELK----NKKPIILVLN 115 (116)
T ss_dssp TTSHSH-HHHHHHHHHHH----TTSEEEEEEE
T ss_pred CCCCCC-HHHHHHHHHHh----cCCCEEEEEc
Confidence 877422 22333334442 5678888765
No 227
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.70 E-value=7.1e-08 Score=56.89 Aligned_cols=59 Identities=14% Similarity=0.176 Sum_probs=43.3
Q ss_pred EEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCCh----hHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 19 FHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNE----KSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 19 ~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~----~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
.++.+|||+|+++|..........+|++++|+|.+++ ++++.+..| ... ...|+++|.|
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~----~~~--~~~~iiivvN 145 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAAL----EIM--GLKHIIIVQN 145 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHH----HHc--CCCcEEEEEE
Confidence 6789999999999988777788889999999999873 444444333 111 2246777766
No 228
>KOG0090|consensus
Probab=98.70 E-value=2.2e-07 Score=55.37 Aligned_cols=83 Identities=18% Similarity=0.279 Sum_probs=59.3
Q ss_pred CCcceeeeeeccCccc---------------eEEEEEEEeCCCchhhhcchhhhcc---CCcEEEEEEECCC-hhHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ---------------HNFHINYRDTAGQERFRTITTAYYR---GAMGIMLVYDITN-EKSFDNI 61 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~---------------~~~~l~i~Dt~g~~~~~~~~~~~~~---~~~~~ilv~d~~~-~~s~~~~ 61 (83)
||||++..++.++.+. ..-...+.|.+|+++.+.-...|++ .+-++++|.|..- ..-...+
T Consensus 49 SGKT~LF~qL~~gs~~~TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdv 128 (238)
T KOG0090|consen 49 SGKTSLFTQLITGSHRGTVTSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDV 128 (238)
T ss_pred CCceeeeeehhcCCccCeeeeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEEEEEeccccchhhHHH
Confidence 7999999999999877 2334688999999999887777887 7899999987643 2333444
Q ss_pred HH-HHHHHHHh--cCCCceEEEEeC
Q psy16649 62 KN-WIRNIEEN--ASANVEKMLLGN 83 (83)
Q Consensus 62 ~~-w~~~~~~~--~~~~~piilvgN 83 (83)
.. ++.-+... ....+|+++.-|
T Consensus 129 aefLydil~~~~~~~~~~~vLIaCN 153 (238)
T KOG0090|consen 129 AEFLYDILLDSRVKKNKPPVLIACN 153 (238)
T ss_pred HHHHHHHHHhhccccCCCCEEEEec
Confidence 44 34444333 246788887765
No 229
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.67 E-value=2.6e-08 Score=61.42 Aligned_cols=28 Identities=18% Similarity=0.269 Sum_probs=21.0
Q ss_pred CCcceeeeeeccCccc------------------------------eEEEEEEEeCCC
Q psy16649 1 SGENLCTLQIFRGCFQ------------------------------HNFHINYRDTAG 28 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~------------------------------~~~~l~i~Dt~g 28 (83)
+||||++.++....+. ..++|.+|||+|
T Consensus 15 ~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpG 72 (276)
T cd01850 15 LGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPG 72 (276)
T ss_pred CCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCC
Confidence 6899998887555431 336799999999
No 230
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.66 E-value=1e-07 Score=67.29 Aligned_cols=56 Identities=21% Similarity=0.248 Sum_probs=46.2
Q ss_pred EEEEeCCCchhhhcchhhhccCCcEEEEEEECCC---hhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 21 INYRDTAGQERFRTITTAYYRGAMGIMLVYDITN---EKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 21 l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~---~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
+.+|||+|++.|..++...++.+|++++|+|.++ +++++.++.+ +. .++|+++|+|
T Consensus 528 i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~l----k~---~~iPiIVViN 586 (1049)
T PRK14845 528 LLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINIL----RQ---YKTPFVVAAN 586 (1049)
T ss_pred EEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHH----HH---cCCCEEEEEE
Confidence 8999999999999999889999999999999987 6777665532 22 2578999887
No 231
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.57 E-value=1.2e-07 Score=59.54 Aligned_cols=36 Identities=19% Similarity=0.307 Sum_probs=29.6
Q ss_pred EEEEEEeCCCc----hhhhcchhhh---ccCCcEEEEEEECCC
Q psy16649 19 FHINYRDTAGQ----ERFRTITTAY---YRGAMGIMLVYDITN 54 (83)
Q Consensus 19 ~~l~i~Dt~g~----~~~~~~~~~~---~~~~~~~ilv~d~~~ 54 (83)
+.+++||++|. +++..+...+ +++||++++|+|++.
T Consensus 69 v~i~l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 69 VPVELIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred ceEEEEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 57899999997 5566665554 899999999999973
No 232
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.55 E-value=2.8e-07 Score=55.36 Aligned_cols=61 Identities=18% Similarity=0.102 Sum_probs=38.7
Q ss_pred EEEEEEeCCCchhhhcchhhhc--cCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 19 FHINYRDTAGQERFRTITTAYY--RGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 19 ~~l~i~Dt~g~~~~~~~~~~~~--~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
..+.+.||+|+++|......-+ +.+|++++|.|...... .....++..+.. .++|+++|-|
T Consensus 84 ~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~---~~ip~ivvvN 146 (224)
T cd04165 84 KLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALA---LNIPVFVVVT 146 (224)
T ss_pred cEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCEEEEEE
Confidence 4688999999999865433333 36899999999876432 222334444433 2466666654
No 233
>KOG0705|consensus
Probab=98.55 E-value=1.1e-07 Score=63.26 Aligned_cols=78 Identities=15% Similarity=0.391 Sum_probs=63.0
Q ss_pred CCcceeeeeeccCccc------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIK 62 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~ 62 (83)
+|||+++.+|..+.|. +...|-+.|.+|. ....|-.++|++|+||.+.+.++|+.++
T Consensus 41 sgktalvhr~ltgty~~~e~~e~~~~kkE~vv~gqs~lLlirdeg~~-----~~aQft~wvdavIfvf~~~d~~s~q~v~ 115 (749)
T KOG0705|consen 41 SGKTALVHRYLTGTYTQDESPEGGRFKKEVVVDGQSHLLLIRDEGGH-----PDAQFCQWVDAVVFVFSVEDEQSFQAVQ 115 (749)
T ss_pred CCceeeeeeeccceeccccCCcCccceeeEEeeccceEeeeecccCC-----chhhhhhhccceEEEEEeccccCHHHHH
Confidence 6999999999999987 5567778888774 2467778899999999999999999999
Q ss_pred HHHHHHHHhc-CCCceEEEEeC
Q psy16649 63 NWIRNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 63 ~w~~~~~~~~-~~~~piilvgN 83 (83)
.....+..+. ...+|++++|.
T Consensus 116 ~l~~~l~~~r~r~~i~l~lvgt 137 (749)
T KOG0705|consen 116 ALAHEMSSYRNISDLPLILVGT 137 (749)
T ss_pred HHHhhcccccccccchHHhhcC
Confidence 8877765443 25677777763
No 234
>KOG3886|consensus
Probab=98.52 E-value=3.1e-07 Score=55.57 Aligned_cols=62 Identities=18% Similarity=0.386 Sum_probs=44.6
Q ss_pred eEEEEEEEeCCCchhh-----hcchhhhccCCcEEEEEEECCChhHHHHHHHHHH---HHHHhcCCCceEE
Q psy16649 17 HNFHINYRDTAGQERF-----RTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIR---NIEENASANVEKM 79 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~-----~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~---~~~~~~~~~~pii 79 (83)
.+.-|.+||.+|||.+ .......+++.++.+.+||++.++--.++....+ .+.+++ |...+.
T Consensus 51 Gnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~S-P~AkiF 120 (295)
T KOG3886|consen 51 GNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNS-PEAKIF 120 (295)
T ss_pred hhheeehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcC-CcceEE
Confidence 6688999999999865 2355678899999999999999876666655444 444444 444443
No 235
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.50 E-value=8.4e-07 Score=52.51 Aligned_cols=38 Identities=18% Similarity=0.134 Sum_probs=32.5
Q ss_pred EEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCCh
Q psy16649 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNE 55 (83)
Q Consensus 18 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 55 (83)
..++.+|||+|+++|.......++.+|++++|+|.++.
T Consensus 76 ~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~ 113 (208)
T cd04166 76 KRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKG 113 (208)
T ss_pred CceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCC
Confidence 34788999999999876666778999999999999875
No 236
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.44 E-value=1e-06 Score=52.51 Aligned_cols=39 Identities=18% Similarity=0.175 Sum_probs=33.6
Q ss_pred eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCCh
Q psy16649 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNE 55 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 55 (83)
...++.+|||+|+.+|........+.+|++++|.|.++.
T Consensus 75 ~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~ 113 (219)
T cd01883 75 EKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKG 113 (219)
T ss_pred CCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCC
Confidence 567899999999988876666677889999999999984
No 237
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=98.32 E-value=7.7e-07 Score=50.86 Aligned_cols=77 Identities=14% Similarity=0.116 Sum_probs=47.6
Q ss_pred CCcceeeeeeccCccc------------------eEEEEEEEeCCCchhh------hcchhhhc--cCCcEEEEEEECCC
Q psy16649 1 SGENLCTLQIFRGCFQ------------------HNFHINYRDTAGQERF------RTITTAYY--RGAMGIMLVYDITN 54 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~------------------~~~~l~i~Dt~g~~~~------~~~~~~~~--~~~~~~ilv~d~~~ 54 (83)
+||||+.+++...... ....+.+.|++|.... ..+...++ .+.|+++.|.|.++
T Consensus 11 vGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~ 90 (156)
T PF02421_consen 11 VGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATN 90 (156)
T ss_dssp SSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGG
T ss_pred CCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCC
Confidence 6999999887765533 2357889999995332 22334444 58999999999987
Q ss_pred hhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 55 EKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 55 ~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
.+. -.....++.+ -..|++++.|
T Consensus 91 l~r---~l~l~~ql~e---~g~P~vvvlN 113 (156)
T PF02421_consen 91 LER---NLYLTLQLLE---LGIPVVVVLN 113 (156)
T ss_dssp HHH---HHHHHHHHHH---TTSSEEEEEE
T ss_pred HHH---HHHHHHHHHH---cCCCEEEEEe
Confidence 542 2233334443 3588888866
No 238
>PRK12739 elongation factor G; Reviewed
Probab=98.32 E-value=1.1e-06 Score=60.03 Aligned_cols=63 Identities=21% Similarity=0.240 Sum_probs=45.0
Q ss_pred eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
...++.++||+|+.+|.......++.+|++++|.|.++.-.-+.. ..+..+.+ .+.|++++.|
T Consensus 71 ~~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~---~~~p~iv~iN 133 (691)
T PRK12739 71 KGHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADK---YGVPRIVFVN 133 (691)
T ss_pred CCEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEE
Confidence 356889999999998888888899999999999998875332222 22223322 3467777765
No 239
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.25 E-value=3.1e-06 Score=49.89 Aligned_cols=38 Identities=21% Similarity=0.173 Sum_probs=31.8
Q ss_pred EEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCCh
Q psy16649 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNE 55 (83)
Q Consensus 18 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 55 (83)
...+.+.||+|+.+|......-+..+|++++|.|.+..
T Consensus 64 ~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g 101 (195)
T cd01884 64 NRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDG 101 (195)
T ss_pred CeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCC
Confidence 45678999999998877667777899999999998764
No 240
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.25 E-value=6.3e-06 Score=53.47 Aligned_cols=59 Identities=12% Similarity=0.158 Sum_probs=38.8
Q ss_pred EEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCC----hhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 19 FHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITN----EKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 19 ~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~----~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
..+.+|||+|+++|......-...+|++++|+|.++ .++.+.+..+ .. . ...|+++|+|
T Consensus 85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l----~~-~-~i~~iiVVlN 147 (411)
T PRK04000 85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMAL----DI-I-GIKNIVIVQN 147 (411)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHH----HH-c-CCCcEEEEEE
Confidence 578999999999886544444456799999999995 3444443322 21 1 1235677765
No 241
>PLN03126 Elongation factor Tu; Provisional
Probab=98.20 E-value=3.4e-06 Score=55.70 Aligned_cols=38 Identities=18% Similarity=0.127 Sum_probs=31.7
Q ss_pred EEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCCh
Q psy16649 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNE 55 (83)
Q Consensus 18 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 55 (83)
..++.++|++|+++|......-...+|++++|.|.++-
T Consensus 143 ~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G 180 (478)
T PLN03126 143 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADG 180 (478)
T ss_pred CcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence 45788999999999976666667789999999998754
No 242
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.20 E-value=1.7e-05 Score=51.21 Aligned_cols=37 Identities=22% Similarity=0.188 Sum_probs=30.5
Q ss_pred EEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCC
Q psy16649 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITN 54 (83)
Q Consensus 18 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~ 54 (83)
..++.+|||+|+++|......-...+|++++|+|.++
T Consensus 74 ~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~ 110 (394)
T TIGR00485 74 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATD 110 (394)
T ss_pred CEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCC
Confidence 4578999999999986555555667899999999987
No 243
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.14 E-value=7.5e-06 Score=53.37 Aligned_cols=77 Identities=16% Similarity=0.068 Sum_probs=51.6
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhh---------cchhhhccCCcEEEEEEEC
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFR---------TITTAYYRGAMGIMLVYDI 52 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~---------~~~~~~~~~~~~~ilv~d~ 52 (83)
+|||||.+|+.....- ....+.+.||+|-+... .....-+..||++|+|.|.
T Consensus 14 VGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~ 93 (444)
T COG1160 14 VGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDG 93 (444)
T ss_pred CcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeC
Confidence 5999999998775543 55679999999976322 2234456689999999998
Q ss_pred CChhH-HH-HHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 53 TNEKS-FD-NIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 53 ~~~~s-~~-~~~~w~~~~~~~~~~~~piilvgN 83 (83)
..--+ -+ .+-+| ++ ..+.|++||.|
T Consensus 94 ~~Git~~D~~ia~~---Lr---~~~kpviLvvN 120 (444)
T COG1160 94 REGITPADEEIAKI---LR---RSKKPVILVVN 120 (444)
T ss_pred CCCCCHHHHHHHHH---HH---hcCCCEEEEEE
Confidence 76322 11 12233 22 24688999887
No 244
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.13 E-value=7.4e-06 Score=52.99 Aligned_cols=35 Identities=23% Similarity=0.331 Sum_probs=28.0
Q ss_pred EEEEEEeCCCc----hhhhcchhhh---ccCCcEEEEEEECC
Q psy16649 19 FHINYRDTAGQ----ERFRTITTAY---YRGAMGIMLVYDIT 53 (83)
Q Consensus 19 ~~l~i~Dt~g~----~~~~~~~~~~---~~~~~~~ilv~d~~ 53 (83)
+.+++||++|. ++...+...+ ++++|++++|+|..
T Consensus 72 ~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 72 IPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred eeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 55889999993 4455566666 88999999999997
No 245
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.09 E-value=5.1e-06 Score=54.45 Aligned_cols=42 Identities=19% Similarity=0.212 Sum_probs=36.4
Q ss_pred eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHH
Q psy16649 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFD 59 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~ 59 (83)
....+.+.|++|+++|.......++.+|++|+|+|.++ .+|+
T Consensus 83 ~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~-G~~e 124 (447)
T PLN00043 83 TKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT-GGFE 124 (447)
T ss_pred CCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEccc-Ccee
Confidence 45688999999999998888888999999999999986 4454
No 246
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.08 E-value=1.2e-05 Score=53.19 Aligned_cols=58 Identities=21% Similarity=0.231 Sum_probs=47.2
Q ss_pred EEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCC---hhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 19 FHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITN---EKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 19 ~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~---~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
-.|.+.||+|++-|..|+..=..=+|.++||.++++ +++.++++. ...-++|+++..|
T Consensus 55 ~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~h-------ak~a~vP~iVAiN 115 (509)
T COG0532 55 PGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAINH-------AKAAGVPIVVAIN 115 (509)
T ss_pred ceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCCcchhHHHHHHH-------HHHCCCCEEEEEe
Confidence 478899999999999999999999999999999987 566555433 2225799998876
No 247
>KOG0468|consensus
Probab=98.07 E-value=9.3e-06 Score=55.49 Aligned_cols=63 Identities=24% Similarity=0.358 Sum_probs=48.9
Q ss_pred eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
+.+.+++.||+|+-+|..-...-++-+|++++++|+..--+++- ++.++.. ...+.|+++|-|
T Consensus 195 KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt-Er~ikha---iq~~~~i~vviN 257 (971)
T KOG0468|consen 195 KSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNT-ERIIKHA---IQNRLPIVVVIN 257 (971)
T ss_pred ceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeH-HHHHHHH---HhccCcEEEEEe
Confidence 78899999999999998888888999999999999987665543 2322222 235788888766
No 248
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.06 E-value=5e-06 Score=51.37 Aligned_cols=65 Identities=12% Similarity=0.127 Sum_probs=47.6
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchh-------hhcchhhhccCCcEEEEEEECCC
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQER-------FRTITTAYYRGAMGIMLVYDITN 54 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~-------~~~~~~~~~~~~~~~ilv~d~~~ 54 (83)
+||||+++.+..+... ..-.+.+||++|-++ |+.....++...|-+++..+..|
T Consensus 50 ~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~d 129 (296)
T COG3596 50 AGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADD 129 (296)
T ss_pred CcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCC
Confidence 6999999998854332 224788999999766 67777888899998888888888
Q ss_pred hhHHHHHHHHH
Q psy16649 55 EKSFDNIKNWI 65 (83)
Q Consensus 55 ~~s~~~~~~w~ 65 (83)
+.---....|.
T Consensus 130 raL~~d~~f~~ 140 (296)
T COG3596 130 RALGTDEDFLR 140 (296)
T ss_pred ccccCCHHHHH
Confidence 75433333333
No 249
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.06 E-value=8.9e-06 Score=56.87 Aligned_cols=62 Identities=21% Similarity=0.222 Sum_probs=44.5
Q ss_pred EEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 18 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
.+.+++.||+|+.+|......-++.+|++|+|.|...--.-+...-|. .+. ..++|++++.|
T Consensus 97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~-~~~---~~~~p~i~~iN 158 (843)
T PLN00116 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QAL---GERIRPVLTVN 158 (843)
T ss_pred ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHH-HHH---HCCCCEEEEEE
Confidence 567899999999999877777889999999999988654333323332 222 24577777765
No 250
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.03 E-value=1e-05 Score=54.92 Aligned_cols=37 Identities=16% Similarity=0.116 Sum_probs=30.4
Q ss_pred EEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCCh
Q psy16649 19 FHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNE 55 (83)
Q Consensus 19 ~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 55 (83)
.++.++||+|+++|......-...+|++++|.|.+..
T Consensus 104 ~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g 140 (632)
T PRK05506 104 RKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKG 140 (632)
T ss_pred ceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCC
Confidence 3678999999999866555567899999999998654
No 251
>COG1159 Era GTPase [General function prediction only]
Probab=97.99 E-value=1.8e-05 Score=49.23 Aligned_cols=78 Identities=14% Similarity=0.180 Sum_probs=50.8
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhh--------hcchhhhccCCcEEEEEEECC
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERF--------RTITTAYYRGAMGIMLVYDIT 53 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~--------~~~~~~~~~~~~~~ilv~d~~ 53 (83)
+|||||++++...... ....+-+.||+|--+- ......-++.+|.+++|.|.+
T Consensus 17 vGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~ 96 (298)
T COG1159 17 VGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDAD 96 (298)
T ss_pred CcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEecc
Confidence 6999999998765443 5678889999994221 223455677999999999987
Q ss_pred ChhHHHHHHHH-HHHHHHhcCCCceEEEEeC
Q psy16649 54 NEKSFDNIKNW-IRNIEENASANVEKMLLGN 83 (83)
Q Consensus 54 ~~~s~~~~~~w-~~~~~~~~~~~~piilvgN 83 (83)
..-. .-.+| ++.++. .+.|++++.|
T Consensus 97 ~~~~--~~d~~il~~lk~---~~~pvil~iN 122 (298)
T COG1159 97 EGWG--PGDEFILEQLKK---TKTPVILVVN 122 (298)
T ss_pred ccCC--ccHHHHHHHHhh---cCCCeEEEEE
Confidence 6322 12222 333332 3567777765
No 252
>CHL00071 tufA elongation factor Tu
Probab=97.96 E-value=2.2e-05 Score=50.88 Aligned_cols=38 Identities=18% Similarity=0.160 Sum_probs=30.9
Q ss_pred EEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCCh
Q psy16649 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNE 55 (83)
Q Consensus 18 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 55 (83)
...+.+.||+|+++|......-...+|++++|.|....
T Consensus 74 ~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g 111 (409)
T CHL00071 74 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADG 111 (409)
T ss_pred CeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCC
Confidence 34678999999998866666667899999999998753
No 253
>PRK00007 elongation factor G; Reviewed
Probab=97.92 E-value=2.7e-05 Score=53.48 Aligned_cols=63 Identities=22% Similarity=0.318 Sum_probs=42.7
Q ss_pred eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
...++.+.||+|+.+|..-...-++.+|++++|.|....-.-+...-| ..+.+ ...|++++.|
T Consensus 73 ~~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~-~~~~~---~~~p~iv~vN 135 (693)
T PRK00007 73 KDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVW-RQADK---YKVPRIAFVN 135 (693)
T ss_pred CCeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHH-HHHHH---cCCCEEEEEE
Confidence 356889999999988866667778899999999998755333332222 22332 2456666665
No 254
>PTZ00416 elongation factor 2; Provisional
Probab=97.91 E-value=2.6e-05 Score=54.62 Aligned_cols=62 Identities=24% Similarity=0.289 Sum_probs=43.7
Q ss_pred EEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 18 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
...+.+.||+|+.+|..-...-++.+|++|+|.|..+.-.-+...-| +.+.+ .++|++++-|
T Consensus 91 ~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~-~~~~~---~~~p~iv~iN 152 (836)
T PTZ00416 91 PFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVL-RQALQ---ERIRPVLFIN 152 (836)
T ss_pred ceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHH-HHHHH---cCCCEEEEEE
Confidence 46688999999999877778888999999999998874332222223 33332 3467777765
No 255
>PRK12736 elongation factor Tu; Reviewed
Probab=97.90 E-value=0.00012 Score=47.34 Aligned_cols=37 Identities=19% Similarity=0.154 Sum_probs=30.4
Q ss_pred EEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCC
Q psy16649 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITN 54 (83)
Q Consensus 18 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~ 54 (83)
...+.++||+|+++|......-...+|++++|+|.+.
T Consensus 74 ~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~ 110 (394)
T PRK12736 74 KRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATD 110 (394)
T ss_pred CcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCC
Confidence 3567899999999986655555678999999999876
No 256
>COG1084 Predicted GTPase [General function prediction only]
Probab=97.87 E-value=4.9e-05 Score=48.05 Aligned_cols=81 Identities=19% Similarity=0.176 Sum_probs=50.8
Q ss_pred CCcceeeeeeccCccc------------------eEEEEEEEeCCCc-hhh----hcc----hhhhccCCcEEEEEEECC
Q psy16649 1 SGENLCTLQIFRGCFQ------------------HNFHINYRDTAGQ-ERF----RTI----TTAYYRGAMGIMLVYDIT 53 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~------------------~~~~l~i~Dt~g~-~~~----~~~----~~~~~~~~~~~ilv~d~~ 53 (83)
+|||||+..+..-... .-..+|+.||+|- ++- ..+ ....-.=+++++++||.+
T Consensus 179 VGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~S 258 (346)
T COG1084 179 VGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPS 258 (346)
T ss_pred CcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCc
Confidence 5999998876654433 4458999999993 211 110 011111256788999988
Q ss_pred Chh--HHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 54 NEK--SFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 54 ~~~--s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
... +.+.=.+++++++.... .|+++|-|
T Consensus 259 e~cgy~lE~Q~~L~~eIk~~f~--~p~v~V~n 288 (346)
T COG1084 259 ETCGYSLEEQISLLEEIKELFK--APIVVVIN 288 (346)
T ss_pred cccCCCHHHHHHHHHHHHHhcC--CCeEEEEe
Confidence 653 34444467788887763 78888765
No 257
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=97.87 E-value=3.5e-05 Score=48.50 Aligned_cols=54 Identities=20% Similarity=0.223 Sum_probs=34.8
Q ss_pred CCcceeeeeeccCc------cc-------------eEEEEEEEeCCCchhhhcc-------hhhhc--cCCcEEEEEEEC
Q psy16649 1 SGENLCTLQIFRGC------FQ-------------HNFHINYRDTAGQERFRTI-------TTAYY--RGAMGIMLVYDI 52 (83)
Q Consensus 1 ~GKss~~~~~~~~~------~~-------------~~~~l~i~Dt~g~~~~~~~-------~~~~~--~~~~~~ilv~d~ 52 (83)
+||||+++++.... |. ...++.++||+|....... ...+. .+.|++++|.++
T Consensus 49 VGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rL 128 (313)
T TIGR00991 49 VGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRL 128 (313)
T ss_pred CCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEecc
Confidence 69999999976533 11 2358999999996643211 12222 268999999665
Q ss_pred CC
Q psy16649 53 TN 54 (83)
Q Consensus 53 ~~ 54 (83)
+.
T Consensus 129 D~ 130 (313)
T TIGR00991 129 DA 130 (313)
T ss_pred Cc
Confidence 53
No 258
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=97.80 E-value=4.4e-05 Score=50.02 Aligned_cols=78 Identities=13% Similarity=0.095 Sum_probs=50.8
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhc--------chhhhccCCcEEEEEEECC
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRT--------ITTAYYRGAMGIMLVYDIT 53 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~--------~~~~~~~~~~~~ilv~d~~ 53 (83)
+|||||++.+....-- ..+.+.+.||+|--.... -...-.+.||.+++|+|.+
T Consensus 228 vGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~ 307 (454)
T COG0486 228 VGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDAS 307 (454)
T ss_pred CcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 6999999987664432 667899999999533221 1244677999999999999
Q ss_pred ChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 54 NEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 54 ~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
.+.+-+... .++ ..+.+.|+++|.|
T Consensus 308 ~~~~~~d~~-~~~----~~~~~~~~i~v~N 332 (454)
T COG0486 308 QPLDKEDLA-LIE----LLPKKKPIIVVLN 332 (454)
T ss_pred CCCchhhHH-HHH----hcccCCCEEEEEe
Confidence 862211111 111 2335677777765
No 259
>PRK12735 elongation factor Tu; Reviewed
Probab=97.78 E-value=0.00016 Score=46.75 Aligned_cols=38 Identities=18% Similarity=0.160 Sum_probs=31.2
Q ss_pred EEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCCh
Q psy16649 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNE 55 (83)
Q Consensus 18 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 55 (83)
...+.++||+|+++|......-...+|++++|+|..+.
T Consensus 74 ~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g 111 (396)
T PRK12735 74 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADG 111 (396)
T ss_pred CcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCC
Confidence 34678999999998866555667789999999999864
No 260
>PLN03127 Elongation factor Tu; Provisional
Probab=97.77 E-value=9e-05 Score=48.74 Aligned_cols=37 Identities=16% Similarity=0.092 Sum_probs=29.3
Q ss_pred EEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCCh
Q psy16649 19 FHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNE 55 (83)
Q Consensus 19 ~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 55 (83)
..+.+.||+|+++|......-...+|++++|.|.++.
T Consensus 124 ~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g 160 (447)
T PLN03127 124 RHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDG 160 (447)
T ss_pred eEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCC
Confidence 4678999999988865444455679999999998754
No 261
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=97.71 E-value=0.00026 Score=41.45 Aligned_cols=54 Identities=19% Similarity=0.185 Sum_probs=35.8
Q ss_pred CCcceeeeeeccCcc-c-------------------eEEEEEEEeCCCchhhh--------cc---hhhhccCCcEEEEE
Q psy16649 1 SGENLCTLQIFRGCF-Q-------------------HNFHINYRDTAGQERFR--------TI---TTAYYRGAMGIMLV 49 (83)
Q Consensus 1 ~GKss~~~~~~~~~~-~-------------------~~~~l~i~Dt~g~~~~~--------~~---~~~~~~~~~~~ilv 49 (83)
+||||++..+..... . ....+.+.||+|-.... .+ ......+.|++++|
T Consensus 11 ~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illV 90 (196)
T cd01852 11 AGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLV 90 (196)
T ss_pred CCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 699999888764321 1 23578999999954321 11 12234678999999
Q ss_pred EECCC
Q psy16649 50 YDITN 54 (83)
Q Consensus 50 ~d~~~ 54 (83)
.++.+
T Consensus 91 i~~~~ 95 (196)
T cd01852 91 VPLGR 95 (196)
T ss_pred EECCC
Confidence 99876
No 262
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=97.70 E-value=5.1e-05 Score=52.24 Aligned_cols=62 Identities=23% Similarity=0.289 Sum_probs=45.9
Q ss_pred EEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 18 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
.+.+++.||+|+-+|..-...-++-+|++++|+|...--.-+.-.-|.... ..++|.+++-|
T Consensus 75 ~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~----~~~vp~i~fiN 136 (697)
T COG0480 75 DYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQAD----KYGVPRILFVN 136 (697)
T ss_pred ceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHh----hcCCCeEEEEE
Confidence 489999999999999998899999999999999987654433333343222 24566666654
No 263
>KOG1423|consensus
Probab=97.63 E-value=9.1e-05 Score=46.76 Aligned_cols=55 Identities=16% Similarity=0.177 Sum_probs=37.9
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchh------hhcc------hhhhccCCcEEEEE
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQER------FRTI------TTAYYRGAMGIMLV 49 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~------~~~~------~~~~~~~~~~~ilv 49 (83)
+|||+|+++......- ....+-++||+|--. +..+ -..-..+||+++++
T Consensus 83 vGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv 162 (379)
T KOG1423|consen 83 VGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVV 162 (379)
T ss_pred cchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEE
Confidence 5999999987654433 667889999999321 1111 11234579999999
Q ss_pred EECCCh
Q psy16649 50 YDITNE 55 (83)
Q Consensus 50 ~d~~~~ 55 (83)
+|.++.
T Consensus 163 ~Das~t 168 (379)
T KOG1423|consen 163 VDASAT 168 (379)
T ss_pred EeccCC
Confidence 999963
No 264
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=97.63 E-value=0.00015 Score=44.31 Aligned_cols=54 Identities=19% Similarity=0.185 Sum_probs=33.9
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhh--c--------chhhhcc--CCcEEEEE
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFR--T--------ITTAYYR--GAMGIMLV 49 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~--~--------~~~~~~~--~~~~~ilv 49 (83)
+||||++..+...... ...++.++||+|-.... . ....|.. ..+++++|
T Consensus 42 vGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V 121 (249)
T cd01853 42 VGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYV 121 (249)
T ss_pred CcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 6999999887764321 23578999999965331 0 1122343 56777777
Q ss_pred EECCC
Q psy16649 50 YDITN 54 (83)
Q Consensus 50 ~d~~~ 54 (83)
..++.
T Consensus 122 ~rlD~ 126 (249)
T cd01853 122 DRLDM 126 (249)
T ss_pred EcCCC
Confidence 65554
No 265
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=97.63 E-value=0.00044 Score=44.63 Aligned_cols=66 Identities=17% Similarity=0.209 Sum_probs=48.2
Q ss_pred EEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCCh----------hHHHHHHHHHHHHHHhc-CCCceEEEEeC
Q psy16649 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNE----------KSFDNIKNWIRNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 18 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~----------~s~~~~~~w~~~~~~~~-~~~~piilvgN 83 (83)
...+.++|.+||..-+.-|..++.+++++|+|.++++- ..+.+.-..++.+-... -.++|++|+-|
T Consensus 235 ~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~ln 311 (389)
T PF00503_consen 235 SRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLN 311 (389)
T ss_dssp TEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE
T ss_pred ccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeee
Confidence 45789999999988899999999999999999998642 22333334444443322 25789988765
No 266
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.62 E-value=4.7e-05 Score=42.98 Aligned_cols=57 Identities=23% Similarity=0.229 Sum_probs=38.7
Q ss_pred CCcceeeeeeccCccc------eEEEEEEEeCCCc----hhhhcchhhhccCCcEEEEEEECCChhH
Q psy16649 1 SGENLCTLQIFRGCFQ------HNFHINYRDTAGQ----ERFRTITTAYYRGAMGIMLVYDITNEKS 57 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~------~~~~l~i~Dt~g~----~~~~~~~~~~~~~~~~~ilv~d~~~~~s 57 (83)
||||||+..+...... -.+.=.+.||+|. .+|..-.-..-.+|+.++++.|.+++.+
T Consensus 12 ~GKTTL~q~L~~~~~~~~KTq~i~~~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~ 78 (143)
T PF10662_consen 12 SGKTTLAQALNGEEIRYKKTQAIEYYDNTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRS 78 (143)
T ss_pred CCHHHHHHHHcCCCCCcCccceeEecccEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCc
Confidence 7999999998776544 2233356899993 2233333334458999999999998744
No 267
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=97.59 E-value=0.00027 Score=45.93 Aligned_cols=39 Identities=18% Similarity=0.128 Sum_probs=32.0
Q ss_pred eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCCh
Q psy16649 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNE 55 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 55 (83)
...++.++||+|+++|......-+..+|++++|.|....
T Consensus 78 ~~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G 116 (406)
T TIGR02034 78 DKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKG 116 (406)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence 345788999999999966555667899999999998754
No 268
>COG2262 HflX GTPases [General function prediction only]
Probab=97.59 E-value=0.00024 Score=46.07 Aligned_cols=83 Identities=14% Similarity=0.151 Sum_probs=55.0
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchh-h-hcchhh------hccCCcEEEEEEECC
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQER-F-RTITTA------YYRGAMGIMLVYDIT 53 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~-~-~~~~~~------~~~~~~~~ilv~d~~ 53 (83)
+||||+.+.+....-- ....+-+-||.|-=+ . ..+.+. -...||.++.|.|.+
T Consensus 203 AGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaS 282 (411)
T COG2262 203 AGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDAS 282 (411)
T ss_pred ccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecC
Confidence 6999999976643221 123456678888322 1 112222 235799999999999
Q ss_pred ChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 54 NEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 54 ~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
+++..+.++.-.+-+.+..-.++|+++|-|
T Consensus 283 dp~~~~~~~~v~~vL~el~~~~~p~i~v~N 312 (411)
T COG2262 283 DPEILEKLEAVEDVLAEIGADEIPIILVLN 312 (411)
T ss_pred ChhHHHHHHHHHHHHHHcCCCCCCEEEEEe
Confidence 998777777666666665446699999876
No 269
>KOG3887|consensus
Probab=97.58 E-value=8.1e-05 Score=45.74 Aligned_cols=54 Identities=20% Similarity=0.271 Sum_probs=42.2
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhc---chhhhccCCcEEEEEEECCC
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRT---ITTAYYRGAMGIMLVYDITN 54 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~---~~~~~~~~~~~~ilv~d~~~ 54 (83)
|||||+.....++.-+ .-+.+++||.+||-.+-. -....++++-|.++|.|..+
T Consensus 38 sGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQd 113 (347)
T KOG3887|consen 38 SGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQD 113 (347)
T ss_pred cCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEEEEEechH
Confidence 7999998887766655 447899999999976522 24677899999999998754
No 270
>KOG1145|consensus
Probab=97.57 E-value=0.00019 Score=48.36 Aligned_cols=58 Identities=24% Similarity=0.287 Sum_probs=45.5
Q ss_pred EEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCC---hhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 19 FHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITN---EKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 19 ~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~---~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
-++.+.||+|+.-|..|+..=-+-+|.+++|....| +++.+.++. ....++|+++.-|
T Consensus 201 ~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkh-------Ak~A~VpiVvAin 261 (683)
T KOG1145|consen 201 KSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKH-------AKSANVPIVVAIN 261 (683)
T ss_pred CEEEEecCCcHHHHHHHHhccCccccEEEEEEEccCCccHhHHHHHHH-------HHhcCCCEEEEEe
Confidence 467899999999999999999999999999997776 466555432 2336788887654
No 271
>KOG1707|consensus
Probab=97.57 E-value=0.00018 Score=48.44 Aligned_cols=80 Identities=14% Similarity=0.240 Sum_probs=55.0
Q ss_pred CCcceeeeeeccCccc--------eEEEEEEEeCCCchhhhcchhhh----------ccCCcEEEEEEECCChhHHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------HNFHINYRDTAGQERFRTITTAY----------YRGAMGIMLVYDITNEKSFDNIK 62 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------~~~~l~i~Dt~g~~~~~~~~~~~----------~~~~~~~ilv~d~~~~~s~~~~~ 62 (83)
||||+++..|..+.+. ..+.++..+..|+++|--++..- =..+|.+.++||.+++.||+-+.
T Consensus 436 ~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~~~~~l~~ke~~cDv~~~~YDsS~p~sf~~~a 515 (625)
T KOG1707|consen 436 CGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGEDDQDFLTSKEAACDVACLVYDSSNPRSFEYLA 515 (625)
T ss_pred CchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCccccccccCccceeeeEEEecccCCchHHHHHH
Confidence 7999999998885554 33445555555666653332211 05689999999999999999887
Q ss_pred HHHHHHHHhcCCCceEEEEe
Q psy16649 63 NWIRNIEENASANVEKMLLG 82 (83)
Q Consensus 63 ~w~~~~~~~~~~~~piilvg 82 (83)
..++.-... ..+|++.|+
T Consensus 516 ~v~~~~~~~--~~~Pc~~va 533 (625)
T KOG1707|consen 516 EVYNKYFDL--YKIPCLMVA 533 (625)
T ss_pred HHHHHhhhc--cCCceEEEe
Confidence 765554333 578888876
No 272
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=97.52 E-value=0.00013 Score=46.25 Aligned_cols=67 Identities=18% Similarity=0.136 Sum_probs=46.5
Q ss_pred CCcceeeeeeccCccc------------------eEEEEEEEeCCCchh----hh---cchhhhccCCcEEEEEEECCCh
Q psy16649 1 SGENLCTLQIFRGCFQ------------------HNFHINYRDTAGQER----FR---TITTAYYRGAMGIMLVYDITNE 55 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~------------------~~~~l~i~Dt~g~~~----~~---~~~~~~~~~~~~~ilv~d~~~~ 55 (83)
+|||||+..+..-.-. +..++|+.|++|--. -+ ...-.-.++||.+++|.|+...
T Consensus 74 vGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~ 153 (365)
T COG1163 74 VGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFED 153 (365)
T ss_pred ccHHHHHHHHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCCC
Confidence 5999999987664433 678999999986321 11 1233567899999999999977
Q ss_pred hH-HHHHHHHHHH
Q psy16649 56 KS-FDNIKNWIRN 67 (83)
Q Consensus 56 ~s-~~~~~~w~~~ 67 (83)
.+ .+.+.+.++.
T Consensus 154 ~~~~~~i~~ELe~ 166 (365)
T COG1163 154 PHHRDIIERELED 166 (365)
T ss_pred hhHHHHHHHHHHh
Confidence 66 5555444433
No 273
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=97.47 E-value=0.00031 Score=46.56 Aligned_cols=72 Identities=11% Similarity=0.192 Sum_probs=50.8
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcchhhhccC----CcEEEEEEECCChhH
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTITTAYYRG----AMGIMLVYDITNEKS 57 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~----~~~~ilv~d~~~~~s 57 (83)
+|||+|+.++....-. ...++.+|-..|...+..+.+.-+.. --.+|+|.|++.+-.
T Consensus 36 ~GKttli~~L~~~e~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t~vvIvlDlS~PW~ 115 (472)
T PF05783_consen 36 SGKTTLIARLQGIEDPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNTLVVIVLDLSKPWN 115 (472)
T ss_pred CchHHHHHHhhccCCCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccceEEEEEecCCChHH
Confidence 6999999887643322 44678999988866666655443332 246788999999977
Q ss_pred -HHHHHHHHHHHHHhc
Q psy16649 58 -FDNIKNWIRNIEENA 72 (83)
Q Consensus 58 -~~~~~~w~~~~~~~~ 72 (83)
.+++++|+..++++.
T Consensus 116 ~~esL~~W~~vl~~~i 131 (472)
T PF05783_consen 116 IMESLEKWLSVLREHI 131 (472)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 567889988776643
No 274
>KOG0082|consensus
Probab=97.45 E-value=0.0014 Score=42.12 Aligned_cols=67 Identities=15% Similarity=0.201 Sum_probs=48.8
Q ss_pred eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHH----------HHHHHHHHHHHHhc-CCCceEEEEeC
Q psy16649 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSF----------DNIKNWIRNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~----------~~~~~w~~~~~~~~-~~~~piilvgN 83 (83)
+...+.++|.+||-.-+.-|.++|.+++++|+|.++++-+-. .+..++++.+-++. =.+.+++|.-|
T Consensus 193 k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLN 270 (354)
T KOG0082|consen 193 KGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLN 270 (354)
T ss_pred CCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEee
Confidence 567889999999988899999999999999999998864321 12223444443322 15788888765
No 275
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=97.43 E-value=0.00035 Score=46.50 Aligned_cols=49 Identities=20% Similarity=0.285 Sum_probs=39.1
Q ss_pred eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHH
Q psy16649 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWI 65 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~ 65 (83)
+.+.|++.||+|+-.|.--....+..|.|.+++.|.+.----+.+.+.+
T Consensus 74 ~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~Y 122 (603)
T COG0481 74 ETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVY 122 (603)
T ss_pred CEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHH
Confidence 7799999999999999887788888999999999998653333344433
No 276
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=97.41 E-value=0.00015 Score=47.63 Aligned_cols=38 Identities=24% Similarity=0.286 Sum_probs=33.3
Q ss_pred eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCC
Q psy16649 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITN 54 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~ 54 (83)
....+++.||+|++.|..-+-.-+..+|+++.|.|...
T Consensus 79 ~~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAK 116 (528)
T COG4108 79 ADCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAK 116 (528)
T ss_pred CCeEEeccCCCCccccchhHHHHHHhhheeeEEEeccc
Confidence 56789999999999998887777888999999999865
No 277
>KOG1489|consensus
Probab=97.41 E-value=0.00055 Score=43.42 Aligned_cols=83 Identities=14% Similarity=0.252 Sum_probs=56.7
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhh----hcchhhhc---cCCcEEEEEEECCC
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERF----RTITTAYY---RGAMGIMLVYDITN 54 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~----~~~~~~~~---~~~~~~ilv~d~~~ 54 (83)
+|||||+..+..-..- .-..+.+-|.+|--+- +-+--.|+ ..+...++|.|++.
T Consensus 207 AGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~ 286 (366)
T KOG1489|consen 207 AGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSG 286 (366)
T ss_pred CcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCC
Confidence 6899998876543322 1223788899884221 22333344 46899999999999
Q ss_pred h---hHHHHHHHHHHHHHHhcC--CCceEEEEeC
Q psy16649 55 E---KSFDNIKNWIRNIEENAS--ANVEKMLLGN 83 (83)
Q Consensus 55 ~---~s~~~~~~w~~~~~~~~~--~~~piilvgN 83 (83)
. +-++.++.+..|+..+.. .+-|.++|+|
T Consensus 287 ~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaN 320 (366)
T KOG1489|consen 287 KQLRNPWQQLQLLIEELELYEKGLADRPALIVAN 320 (366)
T ss_pred cccCCHHHHHHHHHHHHHHHhhhhccCceEEEEe
Confidence 9 888888888888866542 5677788876
No 278
>PRK13768 GTPase; Provisional
Probab=97.40 E-value=0.00054 Score=41.93 Aligned_cols=63 Identities=13% Similarity=0.063 Sum_probs=38.6
Q ss_pred EEEEEeCCCchhh---hcchhhhccC-----CcEEEEEEECCChhHHHHH--HHHHHHHHHhcCCCceEEEEeC
Q psy16649 20 HINYRDTAGQERF---RTITTAYYRG-----AMGIMLVYDITNEKSFDNI--KNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 20 ~l~i~Dt~g~~~~---~~~~~~~~~~-----~~~~ilv~d~~~~~s~~~~--~~w~~~~~~~~~~~~piilvgN 83 (83)
.+.+||++|+.+. +..++.+++. ++++++++|.+...+-... ..|+....... .+.|+++|.|
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~-~~~~~i~v~n 170 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR-LGLPQIPVLN 170 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHH-cCCCEEEEEE
Confidence 6789999998764 3444444443 8899999999654433332 23333333222 4678888765
No 279
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=97.40 E-value=0.00055 Score=45.41 Aligned_cols=38 Identities=16% Similarity=0.126 Sum_probs=30.7
Q ss_pred EEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCCh
Q psy16649 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNE 55 (83)
Q Consensus 18 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 55 (83)
...+.++||+|+++|......-.+.+|++++|.|.+..
T Consensus 106 ~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G 143 (474)
T PRK05124 106 KRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKG 143 (474)
T ss_pred CcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence 45788999999999865444456999999999998753
No 280
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.31 E-value=0.00028 Score=45.24 Aligned_cols=50 Identities=18% Similarity=0.246 Sum_probs=40.0
Q ss_pred CchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 28 GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 28 g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
..++|..+.+.+++.++.+++|+|+.+.. ..|.+++.+.. .+.|+++|+|
T Consensus 49 ~~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~-~~~piilV~N 98 (360)
T TIGR03597 49 NDDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFV-GGNPVLLVGN 98 (360)
T ss_pred CHHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHh-CCCCEEEEEE
Confidence 46789999999999999999999997654 44777777665 3678889987
No 281
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.26 E-value=0.00036 Score=40.62 Aligned_cols=46 Identities=17% Similarity=0.169 Sum_probs=33.6
Q ss_pred hhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 32 FRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 32 ~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
++.++..++++++++++|+|+++... .|.+++.... .+.|+++|+|
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~~-~~~~~ilV~N 69 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLFG-GNNPVILVGN 69 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHhc-CCCcEEEEEE
Confidence 57788999999999999999987642 2333442222 4678888887
No 282
>PRK07560 elongation factor EF-2; Reviewed
Probab=97.14 E-value=0.0015 Score=45.41 Aligned_cols=38 Identities=29% Similarity=0.369 Sum_probs=33.6
Q ss_pred EEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCCh
Q psy16649 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNE 55 (83)
Q Consensus 18 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 55 (83)
...+.+.||+|+.+|.......++.+|++|+|.|....
T Consensus 86 ~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g 123 (731)
T PRK07560 86 EYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEG 123 (731)
T ss_pred cEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCC
Confidence 56788999999999988888889999999999998765
No 283
>KOG0462|consensus
Probab=97.12 E-value=0.0036 Score=42.43 Aligned_cols=40 Identities=23% Similarity=0.345 Sum_probs=36.3
Q ss_pred ceEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCCh
Q psy16649 16 QHNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNE 55 (83)
Q Consensus 16 ~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 55 (83)
.+.+.|++.||+|+-+|+.-....+.-++|+|++.|...-
T Consensus 122 ~~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qG 161 (650)
T KOG0462|consen 122 GQSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQG 161 (650)
T ss_pred CCceEEEeecCCCcccccceehehhhhcCceEEEEEcCcC
Confidence 3789999999999999999888999999999999998764
No 284
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=97.11 E-value=0.0018 Score=36.71 Aligned_cols=53 Identities=17% Similarity=0.257 Sum_probs=39.7
Q ss_pred EEEEEEeCCCchh----hhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHh
Q psy16649 19 FHINYRDTAGQER----FRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEN 71 (83)
Q Consensus 19 ~~l~i~Dt~g~~~----~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~ 71 (83)
..+.+.||+|-.. ...+...|++.+|++|+|.+.+..-+-.....+.+.....
T Consensus 101 ~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~ 157 (168)
T PF00350_consen 101 RNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD 157 (168)
T ss_dssp CSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT
T ss_pred cceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC
Confidence 3578999999643 3467888999999999999999866655666666555544
No 285
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.11 E-value=0.0015 Score=40.66 Aligned_cols=42 Identities=10% Similarity=0.156 Sum_probs=34.7
Q ss_pred hccCCcEEEEEEECCChh-HHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 39 YYRGAMGIMLVYDITNEK-SFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 39 ~~~~~~~~ilv~d~~~~~-s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
.+.++|.+++|+|++++. ++..+++|+..+.. .++|+++|.|
T Consensus 75 i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~---~~ip~iIVlN 117 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA---AGIEPVIVLT 117 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH---cCCCEEEEEE
Confidence 377899999999999998 88999999887754 3577788776
No 286
>PRK00049 elongation factor Tu; Reviewed
Probab=96.97 E-value=0.011 Score=38.49 Aligned_cols=38 Identities=16% Similarity=0.134 Sum_probs=31.3
Q ss_pred EEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCCh
Q psy16649 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNE 55 (83)
Q Consensus 18 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 55 (83)
...+.+.||+|+++|......-...+|++++|.|.+..
T Consensus 74 ~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g 111 (396)
T PRK00049 74 KRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADG 111 (396)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCC
Confidence 45678999999998866666667899999999998764
No 287
>KOG1954|consensus
Probab=96.97 E-value=0.00062 Score=44.22 Aligned_cols=60 Identities=18% Similarity=0.280 Sum_probs=38.3
Q ss_pred EEEEEeCCCch-----------hhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEE
Q psy16649 20 HINYRDTAGQE-----------RFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKML 80 (83)
Q Consensus 20 ~l~i~Dt~g~~-----------~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piil 80 (83)
++.|.||+|-= .|....+.|...+|.++++||....+--.+-+.-++.++.+. +++.++|
T Consensus 148 ~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~E-dkiRVVL 218 (532)
T KOG1954|consen 148 SVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHE-DKIRVVL 218 (532)
T ss_pred heeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCc-ceeEEEe
Confidence 56789999831 123456788899999999998766544444444454554432 4555544
No 288
>KOG1144|consensus
Probab=96.96 E-value=0.0026 Score=44.57 Aligned_cols=58 Identities=19% Similarity=0.155 Sum_probs=43.0
Q ss_pred EEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCC---hhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 19 FHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITN---EKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 19 ~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~---~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
--+.+.||+|+|.|..++.....-||.+|+|.|+.. +++.+++..+ + ..+.|+|+.-|
T Consensus 540 Pg~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lL----R---~rktpFivALN 600 (1064)
T KOG1144|consen 540 PGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLL----R---MRKTPFIVALN 600 (1064)
T ss_pred CeeEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHHHH----H---hcCCCeEEeeh
Confidence 457789999999999999999999999999999975 4444443322 1 14566666544
No 289
>PRK12289 GTPase RsgA; Reviewed
Probab=96.95 E-value=0.0018 Score=41.55 Aligned_cols=48 Identities=17% Similarity=0.212 Sum_probs=36.2
Q ss_pred hcchhhhccCCcEEEEEEECCChh-HHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 33 RTITTAYYRGAMGIMLVYDITNEK-SFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 33 ~~~~~~~~~~~~~~ilv~d~~~~~-s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
..+....+.++|.+++|+|+.++. +...+.+|+..+.. .++|++||.|
T Consensus 80 ~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlN 128 (352)
T PRK12289 80 TELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLN 128 (352)
T ss_pred cceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEE
Confidence 345556788999999999999876 55677888766532 4688888887
No 290
>COG0218 Predicted GTPase [General function prediction only]
Probab=96.90 E-value=0.0027 Score=37.74 Aligned_cols=77 Identities=10% Similarity=0.170 Sum_probs=47.0
Q ss_pred CCcceeeeeeccCccc-----------------eEEEEEEEeCCC----------chhhhcchhhhccC---CcEEEEEE
Q psy16649 1 SGENLCTLQIFRGCFQ-----------------HNFHINYRDTAG----------QERFRTITTAYYRG---AMGIMLVY 50 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-----------------~~~~l~i~Dt~g----------~~~~~~~~~~~~~~---~~~~ilv~ 50 (83)
+||||+++.+....-- -.-.+.+.|.+| +|.+..+...|++. -.+++++.
T Consensus 35 VGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlli 114 (200)
T COG0218 35 VGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLI 114 (200)
T ss_pred ccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCcEEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEE
Confidence 5999999988875421 111267788887 45666777778774 45677777
Q ss_pred ECCChhHHHHH--HHHHHHHHHhcCCCceEEEEeC
Q psy16649 51 DITNEKSFDNI--KNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 51 d~~~~~s~~~~--~~w~~~~~~~~~~~~piilvgN 83 (83)
|....-.-.+. -+|+.+ .++|++++.|
T Consensus 115 D~r~~~~~~D~em~~~l~~------~~i~~~vv~t 143 (200)
T COG0218 115 DARHPPKDLDREMIEFLLE------LGIPVIVVLT 143 (200)
T ss_pred ECCCCCcHHHHHHHHHHHH------cCCCeEEEEE
Confidence 87654332222 233322 4677777764
No 291
>PRK00098 GTPase RsgA; Reviewed
Probab=96.89 E-value=0.0019 Score=40.46 Aligned_cols=40 Identities=10% Similarity=0.200 Sum_probs=31.4
Q ss_pred cCCcEEEEEEECCChhHHHH-HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 41 RGAMGIMLVYDITNEKSFDN-IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 41 ~~~~~~ilv~d~~~~~s~~~-~~~w~~~~~~~~~~~~piilvgN 83 (83)
.++|.+++|+|+++++++.. +.+|+..+.. .++|+++|.|
T Consensus 79 aniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlN 119 (298)
T PRK00098 79 ANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLN 119 (298)
T ss_pred ecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEE
Confidence 78999999999998877555 5788777643 4678888876
No 292
>KOG3905|consensus
Probab=96.85 E-value=0.0028 Score=40.70 Aligned_cols=72 Identities=11% Similarity=0.131 Sum_probs=48.5
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcchhhhccCC----cEEEEEEECCCh-h
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTITTAYYRGA----MGIMLVYDITNE-K 56 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~----~~~ilv~d~~~~-~ 56 (83)
+|||+|+.++..-.-. ...++.+|-..|.--...+...-+... ..+|++-|++++ .
T Consensus 63 sGKtsLi~klqg~e~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetlviltasms~Pw~ 142 (473)
T KOG3905|consen 63 SGKTSLISKLQGSETVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETLVILTASMSNPWT 142 (473)
T ss_pred CchhHHHHHhhcccccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceEEEEEEecCCcHH
Confidence 6999999887654322 334566777777554444443333321 356888999999 6
Q ss_pred HHHHHHHHHHHHHHhc
Q psy16649 57 SFDNIKNWIRNIEENA 72 (83)
Q Consensus 57 s~~~~~~w~~~~~~~~ 72 (83)
-++++++|..-++++.
T Consensus 143 ~lesLqkWa~Vl~ehi 158 (473)
T KOG3905|consen 143 LLESLQKWASVLREHI 158 (473)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6889999988887754
No 293
>KOG1191|consensus
Probab=96.82 E-value=0.0018 Score=43.11 Aligned_cols=52 Identities=21% Similarity=0.128 Sum_probs=37.5
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchh-h-hc-------chhhhccCCcEEEEEEEC
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQER-F-RT-------ITTAYYRGAMGIMLVYDI 52 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~-~-~~-------~~~~~~~~~~~~ilv~d~ 52 (83)
+|||||++.+....-. .-+.+.+.||+|--+ - .. -...-.+.||.+++|+|.
T Consensus 279 vGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda 358 (531)
T KOG1191|consen 279 VGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDA 358 (531)
T ss_pred CCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecc
Confidence 6999999988765443 557888999999533 1 11 123455689999999998
No 294
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=96.78 E-value=0.0023 Score=38.14 Aligned_cols=53 Identities=21% Similarity=0.204 Sum_probs=31.0
Q ss_pred CCcceeeeeeccCcc-c-------------------eEEEEEEEeCCCchhh--------hcc---hhhhccCCcEEEEE
Q psy16649 1 SGENLCTLQIFRGCF-Q-------------------HNFHINYRDTAGQERF--------RTI---TTAYYRGAMGIMLV 49 (83)
Q Consensus 1 ~GKss~~~~~~~~~~-~-------------------~~~~l~i~Dt~g~~~~--------~~~---~~~~~~~~~~~ilv 49 (83)
|||||+...+..... . ....+.++||+|--.. ..+ ......+.|++++|
T Consensus 11 sGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llV 90 (212)
T PF04548_consen 11 SGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLV 90 (212)
T ss_dssp SSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEE
T ss_pred CCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEE
Confidence 688888877553222 1 2367889999983211 111 12334579999999
Q ss_pred EECC
Q psy16649 50 YDIT 53 (83)
Q Consensus 50 ~d~~ 53 (83)
....
T Consensus 91 i~~~ 94 (212)
T PF04548_consen 91 IPLG 94 (212)
T ss_dssp EETT
T ss_pred EecC
Confidence 9988
No 295
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=96.72 E-value=0.0033 Score=41.56 Aligned_cols=39 Identities=21% Similarity=0.147 Sum_probs=25.3
Q ss_pred CCcEEEEEE-ECC----ChhHHHHHH-HHHHHHHHhcCCCceEEEEeC
Q psy16649 42 GAMGIMLVY-DIT----NEKSFDNIK-NWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 42 ~~~~~ilv~-d~~----~~~s~~~~~-~w~~~~~~~~~~~~piilvgN 83 (83)
+++..|+|. |-+ .++.+...+ +|++++++. +.|+++|-|
T Consensus 144 hstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~~---~kPfiivlN 188 (492)
T TIGR02836 144 HSTIGVVVTTDGTITDIPREDYVEAEERVIEELKEL---NKPFIILLN 188 (492)
T ss_pred cCcEEEEEEcCCCccccccccchHHHHHHHHHHHhc---CCCEEEEEE
Confidence 788888887 553 234455554 788888764 466666654
No 296
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=96.66 E-value=0.0072 Score=42.05 Aligned_cols=73 Identities=16% Similarity=0.188 Sum_probs=44.0
Q ss_pred CCcceeeeeeccCc-cc------------------eEEEEEEEeCCCchhhh-------c---chhhhcc--CCcEEEEE
Q psy16649 1 SGENLCTLQIFRGC-FQ------------------HNFHINYRDTAGQERFR-------T---ITTAYYR--GAMGIMLV 49 (83)
Q Consensus 1 ~GKss~~~~~~~~~-~~------------------~~~~l~i~Dt~g~~~~~-------~---~~~~~~~--~~~~~ilv 49 (83)
+||||+++.+.... |. ....+.++||+|-.... . ....++. ..|++|+|
T Consensus 129 VGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV 208 (763)
T TIGR00993 129 VGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYV 208 (763)
T ss_pred CCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 58999888766543 22 22468899999964321 1 1222433 58999999
Q ss_pred EECCChhHHHHHHHHHHHHHHhcC
Q psy16649 50 YDITNEKSFDNIKNWIRNIEENAS 73 (83)
Q Consensus 50 ~d~~~~~s~~~~~~w~~~~~~~~~ 73 (83)
.+++......+-..+++.+.+..+
T Consensus 209 ~RLd~~~~D~eD~~aLr~Iq~lFG 232 (763)
T TIGR00993 209 DRLDMQTRDSNDLPLLRTITDVLG 232 (763)
T ss_pred EeCCCccccHHHHHHHHHHHHHhC
Confidence 988644433233356666666554
No 297
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=96.64 E-value=0.0015 Score=43.52 Aligned_cols=38 Identities=24% Similarity=0.329 Sum_probs=34.7
Q ss_pred eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCC
Q psy16649 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITN 54 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~ 54 (83)
+.++++|.||+|+..|..-.+.-++-.|+++++.|..+
T Consensus 66 ~~~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~E 103 (603)
T COG1217 66 NGTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASE 103 (603)
T ss_pred CCeEEEEecCCCcCCccchhhhhhhhcceEEEEEEccc
Confidence 66899999999999999888899999999999999865
No 298
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=96.63 E-value=0.005 Score=40.30 Aligned_cols=40 Identities=18% Similarity=0.195 Sum_probs=33.9
Q ss_pred eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChh
Q psy16649 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEK 56 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 56 (83)
..+.+.|.|++|+..|-.-.-.-..+||+.|||.|..+.+
T Consensus 83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~e 122 (428)
T COG5256 83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGE 122 (428)
T ss_pred CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCc
Confidence 5568999999999888777677788999999999988763
No 299
>PRK12288 GTPase RsgA; Reviewed
Probab=96.59 E-value=0.0045 Score=39.68 Aligned_cols=39 Identities=21% Similarity=0.307 Sum_probs=31.8
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 42 GAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 42 ~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
++|.+++|++++...++..++.|+..+. . .++|.+||.|
T Consensus 120 NvD~vlIV~s~~p~~s~~~Ldr~L~~a~-~--~~i~~VIVlN 158 (347)
T PRK12288 120 NIDQIVIVSAVLPELSLNIIDRYLVACE-T--LGIEPLIVLN 158 (347)
T ss_pred EccEEEEEEeCCCCCCHHHHHHHHHHHH-h--cCCCEEEEEE
Confidence 4899999999999999999999987553 2 4577778876
No 300
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=96.59 E-value=0.0023 Score=41.34 Aligned_cols=36 Identities=19% Similarity=0.152 Sum_probs=28.1
Q ss_pred eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEEC
Q psy16649 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDI 52 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~ 52 (83)
..-++.|-||+|+|+|-.....=-..||..|+..|.
T Consensus 84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDA 119 (431)
T COG2895 84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDA 119 (431)
T ss_pred ccceEEEecCCcHHHHhhhhhcccccccEEEEEEec
Confidence 556888999999999966555555677888888776
No 301
>COG1160 Predicted GTPases [General function prediction only]
Probab=96.58 E-value=0.0091 Score=39.45 Aligned_cols=60 Identities=25% Similarity=0.117 Sum_probs=41.2
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcch-----------hhhccCCcEEEEEE
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTIT-----------TAYYRGAMGIMLVY 50 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~-----------~~~~~~~~~~ilv~ 50 (83)
+|||||++.+....-. ..-++.+.||+|..+-.... ..-...++.+++|.
T Consensus 189 vGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllvi 268 (444)
T COG1160 189 VGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVI 268 (444)
T ss_pred CCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEE
Confidence 5999999998765433 34467789999954322221 23345799999999
Q ss_pred ECCChhHHHH
Q psy16649 51 DITNEKSFDN 60 (83)
Q Consensus 51 d~~~~~s~~~ 60 (83)
|.+..-+-+.
T Consensus 269 Da~~~~~~qD 278 (444)
T COG1160 269 DATEGISEQD 278 (444)
T ss_pred ECCCCchHHH
Confidence 9998766444
No 302
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=96.41 E-value=0.0054 Score=38.17 Aligned_cols=34 Identities=21% Similarity=0.142 Sum_probs=22.8
Q ss_pred EEEEEeCCCchh----hhcch---hhhccCCcEEEEEEECC
Q psy16649 20 HINYRDTAGQER----FRTIT---TAYYRGAMGIMLVYDIT 53 (83)
Q Consensus 20 ~l~i~Dt~g~~~----~~~~~---~~~~~~~~~~ilv~d~~ 53 (83)
.+++.|++|--+ ...+. -..++++|+++.|.|..
T Consensus 63 ~i~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 63 TIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred EEEEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCc
Confidence 489999999432 11222 23356899999999863
No 303
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=96.33 E-value=0.022 Score=37.93 Aligned_cols=37 Identities=11% Similarity=0.136 Sum_probs=30.8
Q ss_pred EEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCCh
Q psy16649 19 FHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNE 55 (83)
Q Consensus 19 ~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 55 (83)
..+.+.|++|+++|....-.-...+|++++|.|.++.
T Consensus 117 ~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g 153 (460)
T PTZ00327 117 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANES 153 (460)
T ss_pred ceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence 3678999999999976656667799999999999863
No 304
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=96.26 E-value=0.0075 Score=33.93 Aligned_cols=48 Identities=8% Similarity=0.142 Sum_probs=29.8
Q ss_pred hhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 32 FRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 32 ~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
++.+..+..+++|.+++|+|.+++..... ..+.+.+. ..+.|+++|.|
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~---~~~~p~iiv~N 49 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVL---ELGKKLLIVLN 49 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHH---hCCCcEEEEEE
Confidence 35567788888999999999987643322 12222221 13567788776
No 305
>PTZ00258 GTP-binding protein; Provisional
Probab=96.24 E-value=0.0097 Score=38.82 Aligned_cols=34 Identities=21% Similarity=0.199 Sum_probs=22.9
Q ss_pred EEEEEeCCCchhh----hcch---hhhccCCcEEEEEEECC
Q psy16649 20 HINYRDTAGQERF----RTIT---TAYYRGAMGIMLVYDIT 53 (83)
Q Consensus 20 ~l~i~Dt~g~~~~----~~~~---~~~~~~~~~~ilv~d~~ 53 (83)
.+++.||+|--.- ..+. -..++.+|++++|.|..
T Consensus 86 qi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 86 QLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CeEEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 4899999994321 1122 23456899999999974
No 306
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=96.24 E-value=0.013 Score=35.26 Aligned_cols=53 Identities=8% Similarity=0.086 Sum_probs=34.0
Q ss_pred CCcceeeeeeccCcc---------------ceEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChh
Q psy16649 1 SGENLCTLQIFRGCF---------------QHNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEK 56 (83)
Q Consensus 1 ~GKss~~~~~~~~~~---------------~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 56 (83)
+|||+++..+....- ....++.+.||+|.- ..+. ...+.+|.++++.|.+...
T Consensus 50 ~GKstl~~~l~~~~~~~~~~~~~g~i~i~~~~~~~i~~vDtPg~~--~~~l-~~ak~aDvVllviDa~~~~ 117 (225)
T cd01882 50 VGKTTLIKSLVKNYTKQNISDIKGPITVVTGKKRRLTFIECPNDI--NAMI-DIAKVADLVLLLIDASFGF 117 (225)
T ss_pred CCHHHHHHHHHhhcccCccccccccEEEEecCCceEEEEeCCchH--HHHH-HHHHhcCEEEEEEecCcCC
Confidence 588888855443210 133456788999853 2222 2357899999999987543
No 307
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=96.21 E-value=0.046 Score=26.27 Aligned_cols=40 Identities=15% Similarity=0.248 Sum_probs=25.2
Q ss_pred CcEEEEEEECCChhHH--HHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 43 AMGIMLVYDITNEKSF--DNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 43 ~~~~ilv~d~~~~~s~--~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
++++++++|++..--+ ++=-..+++++... ++.|+++|.|
T Consensus 14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F-~~~P~i~V~n 55 (58)
T PF06858_consen 14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF-PNKPVIVVLN 55 (58)
T ss_dssp -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT-TTS-EEEEE-
T ss_pred cceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc-CCCCEEEEEe
Confidence 4678999999976443 33345677787766 5888888876
No 308
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=96.21 E-value=0.016 Score=38.37 Aligned_cols=38 Identities=18% Similarity=0.115 Sum_probs=33.1
Q ss_pred eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCC
Q psy16649 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITN 54 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~ 54 (83)
....+.+.||+|+++|......-...+|++++|.|.+.
T Consensus 83 ~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~ 120 (446)
T PTZ00141 83 PKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTA 120 (446)
T ss_pred CCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCC
Confidence 45788999999999997777777889999999999875
No 309
>PRK09866 hypothetical protein; Provisional
Probab=96.17 E-value=0.028 Score=39.15 Aligned_cols=64 Identities=20% Similarity=0.213 Sum_probs=40.7
Q ss_pred EEEEEEEeCCCchh-----hhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 18 NFHINYRDTAGQER-----FRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 18 ~~~l~i~Dt~g~~~-----~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
...+.+.||+|-.. ........+..+|++++|.|.++.-+..+ ....+.+++.. ...|+++|.|
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~-K~~PVILVVN 297 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVG-QSVPLYVLVN 297 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcC-CCCCEEEEEE
Confidence 45667899999643 22233457899999999999987544333 22333443322 3468888876
No 310
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=96.10 E-value=0.0032 Score=35.08 Aligned_cols=15 Identities=7% Similarity=-0.108 Sum_probs=11.9
Q ss_pred CCcceeeeeeccCcc
Q psy16649 1 SGENLCTLQIFRGCF 15 (83)
Q Consensus 1 ~GKss~~~~~~~~~~ 15 (83)
+||||++.++.....
T Consensus 94 vGKstlin~l~~~~~ 108 (141)
T cd01857 94 VGKSSLINALVGKKK 108 (141)
T ss_pred CCHHHHHHHHhCCCc
Confidence 699999988876554
No 311
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=96.07 E-value=0.011 Score=32.84 Aligned_cols=42 Identities=14% Similarity=0.285 Sum_probs=27.7
Q ss_pred hhccCCcEEEEEEECCChhHHH--HHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 38 AYYRGAMGIMLVYDITNEKSFD--NIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 38 ~~~~~~~~~ilv~d~~~~~s~~--~~~~w~~~~~~~~~~~~piilvgN 83 (83)
..+..+|.+++|+|..++.+.. .+.+|+... . .+.|+++|.|
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~-~~k~~iivlN 50 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKEV---D-PRKKNILLLN 50 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---c-CCCcEEEEEe
Confidence 4467889999999998876644 344554432 1 3567777766
No 312
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=95.93 E-value=0.018 Score=37.07 Aligned_cols=83 Identities=10% Similarity=0.095 Sum_probs=52.1
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchh----hhcchhhhc---cCCcEEEEEEECCC
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQER----FRTITTAYY---RGAMGIMLVYDITN 54 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~----~~~~~~~~~---~~~~~~ilv~d~~~ 54 (83)
+|||||+..+..-... ..-.+.+=|.+|-=. -.-+-..|+ ..+..++.|.|++.
T Consensus 170 aGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~ 249 (369)
T COG0536 170 AGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSP 249 (369)
T ss_pred CcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhhheeEEEEecCc
Confidence 6999998876543322 222366677776311 122333344 46788999999997
Q ss_pred hhH---HHHHHHHHHHHHHhcC--CCceEEEEeC
Q psy16649 55 EKS---FDNIKNWIRNIEENAS--ANVEKMLLGN 83 (83)
Q Consensus 55 ~~s---~~~~~~w~~~~~~~~~--~~~piilvgN 83 (83)
.+- .++.+....++..+.+ .+-|.+||+|
T Consensus 250 ~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~N 283 (369)
T COG0536 250 IDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLN 283 (369)
T ss_pred ccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEe
Confidence 653 6666777777777653 4567777776
No 313
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=95.78 E-value=0.006 Score=39.58 Aligned_cols=51 Identities=10% Similarity=-0.002 Sum_probs=28.3
Q ss_pred CCcceeeeeecc--Cccc--------------------eEEEEEEEeCCCchhhhcchhhh-----ccCCcEEEEEEE
Q psy16649 1 SGENLCTLQIFR--GCFQ--------------------HNFHINYRDTAGQERFRTITTAY-----YRGAMGIMLVYD 51 (83)
Q Consensus 1 ~GKss~~~~~~~--~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~-----~~~~~~~ilv~d 51 (83)
+||||+++.+.. +.-+ +.-++.+||.+|...-......| +..-|.+|++.+
T Consensus 46 sGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~~~yD~fiii~s 123 (376)
T PF05049_consen 46 SGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEVKFYRYDFFIIISS 123 (376)
T ss_dssp SSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHTTGGG-SEEEEEES
T ss_pred CCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHccccccCEEEEEeC
Confidence 699999987732 1111 22368899999965433333333 456788888765
No 314
>KOG0099|consensus
Probab=95.74 E-value=0.12 Score=32.65 Aligned_cols=38 Identities=16% Similarity=0.238 Sum_probs=34.2
Q ss_pred eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCC
Q psy16649 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITN 54 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~ 54 (83)
..++++++|.+||..-+.-|-..+.+..|+|+|...++
T Consensus 200 dkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSs 237 (379)
T KOG0099|consen 200 DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSS 237 (379)
T ss_pred cccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccc
Confidence 56789999999999999999999999999999987664
No 315
>KOG0465|consensus
Probab=95.72 E-value=0.036 Score=38.23 Aligned_cols=38 Identities=29% Similarity=0.360 Sum_probs=31.4
Q ss_pred eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCC
Q psy16649 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITN 54 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~ 54 (83)
...+++|.||+|+-.|---...-++-.|+++++.|...
T Consensus 102 ~~~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~ 139 (721)
T KOG0465|consen 102 RDYRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVA 139 (721)
T ss_pred ccceeEEecCCCceeEEEEehhhhhhccCeEEEEEccc
Confidence 67899999999999887767777788888888887654
No 316
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=95.62 E-value=0.0027 Score=35.74 Aligned_cols=13 Identities=8% Similarity=-0.043 Sum_probs=10.2
Q ss_pred CCcceeeeeeccC
Q psy16649 1 SGENLCTLQIFRG 13 (83)
Q Consensus 1 ~GKss~~~~~~~~ 13 (83)
+|||+++.++..+
T Consensus 112 ~Gkssl~~~l~~~ 124 (156)
T cd01859 112 VGKSSIINALKGR 124 (156)
T ss_pred CCHHHHHHHHhCC
Confidence 5899998887753
No 317
>KOG1532|consensus
Probab=95.29 E-value=0.012 Score=37.06 Aligned_cols=14 Identities=36% Similarity=0.418 Sum_probs=10.6
Q ss_pred eEEEEEEEeCCCch
Q psy16649 17 HNFHINYRDTAGQE 30 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~ 30 (83)
..+...+.||+||-
T Consensus 114 ~~~~~~liDTPGQI 127 (366)
T KOG1532|consen 114 EEFDYVLIDTPGQI 127 (366)
T ss_pred cccCEEEEcCCCce
Confidence 45677888999983
No 318
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=95.24 E-value=0.071 Score=39.30 Aligned_cols=42 Identities=12% Similarity=0.207 Sum_probs=30.3
Q ss_pred CCcEEEEEEECCChhH-----H----HHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 42 GAMGIMLVYDITNEKS-----F----DNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 42 ~~~~~ilv~d~~~~~s-----~----~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
..+|+|++.|+.+.-. . ..++..++++.+..+-.+|+.||-+
T Consensus 201 plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~T 251 (1169)
T TIGR03348 201 PLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLT 251 (1169)
T ss_pred CCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEe
Confidence 5899999999876421 1 2355667777777778999988753
No 319
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=95.16 E-value=0.072 Score=34.60 Aligned_cols=34 Identities=24% Similarity=0.185 Sum_probs=23.2
Q ss_pred EEEEEeCCCchhh----hcch---hhhccCCcEEEEEEECC
Q psy16649 20 HINYRDTAGQERF----RTIT---TAYYRGAMGIMLVYDIT 53 (83)
Q Consensus 20 ~l~i~Dt~g~~~~----~~~~---~~~~~~~~~~ilv~d~~ 53 (83)
.+++.|++|-..- ..+. -..++.+|+++.|.|..
T Consensus 67 ~i~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 67 TIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred eEEEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 5899999994321 1122 23457899999999974
No 320
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=95.00 E-value=0.0062 Score=34.95 Aligned_cols=15 Identities=7% Similarity=-0.051 Sum_probs=11.9
Q ss_pred CCcceeeeeeccCcc
Q psy16649 1 SGENLCTLQIFRGCF 15 (83)
Q Consensus 1 ~GKss~~~~~~~~~~ 15 (83)
+||||++.++....+
T Consensus 126 vGKstlin~l~~~~~ 140 (171)
T cd01856 126 VGKSTLINRLRGKKV 140 (171)
T ss_pred CCHHHHHHHHhCCCc
Confidence 699999888876554
No 321
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=94.86 E-value=0.091 Score=36.50 Aligned_cols=57 Identities=16% Similarity=0.121 Sum_probs=39.2
Q ss_pred CCcceeeeeeccCccc------------------eEEEEEEEeCCCchhhh------cchhhhcc--CCcEEEEEEECCC
Q psy16649 1 SGENLCTLQIFRGCFQ------------------HNFHINYRDTAGQERFR------TITTAYYR--GAMGIMLVYDITN 54 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~------------------~~~~l~i~Dt~g~~~~~------~~~~~~~~--~~~~~ilv~d~~~ 54 (83)
+|||++.+++...... +.-++++.|.+|-.... .....|+. ..|.++-|.|.+|
T Consensus 14 vGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtn 93 (653)
T COG0370 14 VGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATN 93 (653)
T ss_pred ccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccch
Confidence 6999999887653322 34468899999965432 23344443 5799999999998
Q ss_pred hhH
Q psy16649 55 EKS 57 (83)
Q Consensus 55 ~~s 57 (83)
.+.
T Consensus 94 LeR 96 (653)
T COG0370 94 LER 96 (653)
T ss_pred HHH
Confidence 764
No 322
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=94.83 E-value=0.34 Score=26.91 Aligned_cols=61 Identities=11% Similarity=0.129 Sum_probs=37.8
Q ss_pred EEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 19 FHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 19 ~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
+.+.+.|+++.. .......+..+|.++++.+.+ ..++..+...++.+.+.. ...++.+|.|
T Consensus 45 yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~-~~s~~~~~~~l~~l~~~~-~~~~~~lVvN 105 (139)
T cd02038 45 YDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE-PTSITDAYALIKKLAKQL-RVLNFRVVVN 105 (139)
T ss_pred CCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC-hhHHHHHHHHHHHHHHhc-CCCCEEEEEe
Confidence 677889998642 233356788999999988764 555666555555555433 2334444443
No 323
>KOG0458|consensus
Probab=94.66 E-value=0.076 Score=36.37 Aligned_cols=38 Identities=18% Similarity=0.134 Sum_probs=31.6
Q ss_pred eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCC
Q psy16649 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITN 54 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~ 54 (83)
....+.|.|++|+..|-...-.-...||+.+||.|.+-
T Consensus 253 ~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~ 290 (603)
T KOG0458|consen 253 KSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDAST 290 (603)
T ss_pred CceeEEEecCCCccccchhhhccccccceEEEEEECCc
Confidence 55788899999998887766666778999999999764
No 324
>KOG0464|consensus
Probab=94.57 E-value=0.017 Score=38.43 Aligned_cols=38 Identities=29% Similarity=0.383 Sum_probs=34.5
Q ss_pred eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCC
Q psy16649 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITN 54 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~ 54 (83)
+..++++.||+|+-.|+--...+++--|+++.|||.+-
T Consensus 100 kg~rinlidtpghvdf~leverclrvldgavav~dasa 137 (753)
T KOG0464|consen 100 KGHRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASA 137 (753)
T ss_pred ccceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccC
Confidence 66788999999999999989999999999999999864
No 325
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=94.48 E-value=0.2 Score=28.73 Aligned_cols=61 Identities=13% Similarity=0.078 Sum_probs=41.0
Q ss_pred eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
..+.+-|.||++... ......+..+|.++++...+ ..+...+..+.+.+++. +.|+.+|.|
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~-~~~~~~~~~~~~~l~~~---~~~~~vV~N 151 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPT-PSGLHDLERAVELVRHF---GIPVGVVIN 151 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCC-cccHHHHHHHHHHHHHc---CCCEEEEEe
Confidence 467889999986532 12334568899999998876 45677777777766643 344556654
No 326
>PF13173 AAA_14: AAA domain
Probab=94.12 E-value=0.036 Score=30.31 Aligned_cols=15 Identities=13% Similarity=0.171 Sum_probs=12.7
Q ss_pred CCcceeeeeeccCcc
Q psy16649 1 SGENLCTLQIFRGCF 15 (83)
Q Consensus 1 ~GKss~~~~~~~~~~ 15 (83)
||||+++.++.....
T Consensus 13 vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 13 VGKTTLLKQLAKDLL 27 (128)
T ss_pred CCHHHHHHHHHHHhc
Confidence 799999999987654
No 327
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=94.10 E-value=0.23 Score=26.78 Aligned_cols=39 Identities=10% Similarity=0.087 Sum_probs=29.5
Q ss_pred EEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 45 GIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 45 ~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
.-+++++.++...+..+.++.+++++..++++++++-|+
T Consensus 51 pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG~ 89 (119)
T cd02067 51 ADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGGA 89 (119)
T ss_pred CCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEECC
Confidence 335555777788889999999999987533788888764
No 328
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=93.85 E-value=0.034 Score=31.16 Aligned_cols=57 Identities=16% Similarity=0.162 Sum_probs=32.0
Q ss_pred CCcceeeeeeccCccc----eEEEE---EEEeCCCc----hhhhcchhhhccCCcEEEEEEECCChhH
Q psy16649 1 SGENLCTLQIFRGCFQ----HNFHI---NYRDTAGQ----ERFRTITTAYYRGAMGIMLVYDITNEKS 57 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~----~~~~l---~i~Dt~g~----~~~~~~~~~~~~~~~~~ilv~d~~~~~s 57 (83)
||||++...+..+.-- +-++. ...||+|- .++..-.......++.++++-..++++|
T Consensus 12 cGKTtL~q~L~G~~~lykKTQAve~~d~~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s 79 (148)
T COG4917 12 CGKTTLFQSLYGNDTLYKKTQAVEFNDKGDIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPES 79 (148)
T ss_pred cCchhHHHHhhcchhhhcccceeeccCccccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCccc
Confidence 7999998887654322 22333 25688873 2222222333456777777776666633
No 329
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=93.79 E-value=0.15 Score=32.12 Aligned_cols=65 Identities=11% Similarity=0.162 Sum_probs=40.4
Q ss_pred CCcceeeeeeccCccceEEEEEEEeCCCchhhhcchhhhccC--CcEEEEEEECCChhHHHHHHHHHHHHHHh
Q psy16649 1 SGENLCTLQIFRGCFQHNFHINYRDTAGQERFRTITTAYYRG--AMGIMLVYDITNEKSFDNIKNWIRNIEEN 71 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~--~~~~ilv~d~~~~~s~~~~~~w~~~~~~~ 71 (83)
||||+++..+.... ....|-...+-+..+....... ...+.++.|+.+.+.++.....+..+++.
T Consensus 17 sGKtt~~~~l~~~g------~~~~d~~~~~L~~~l~~~~~~~~~~~~~av~iD~r~~~~~~~~~~~~~~L~~~ 83 (288)
T PRK05416 17 AGKSVALRALEDLG------YYCVDNLPPSLLPKLVELLAQSGGIRKVAVVIDVRSRPFFDDLPEALDELRER 83 (288)
T ss_pred CcHHHHHHHHHHcC------CeEECCcCHHHHHHHHHHHHhcCCCCCeEEEEccCchhhHHHHHHHHHHHHHc
Confidence 79999999885432 2233444333344443333332 35577888999887666777777777765
No 330
>KOG0467|consensus
Probab=93.55 E-value=0.25 Score=35.17 Aligned_cols=50 Identities=20% Similarity=0.503 Sum_probs=38.8
Q ss_pred eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCC---hhHHHHHH-HHHH
Q psy16649 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITN---EKSFDNIK-NWIR 66 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~---~~s~~~~~-~w~~ 66 (83)
+.+.+++.|++|+-+|.+....-.+=+|++++..|+.. .++..-++ .|.+
T Consensus 70 ~~~~~nlidspghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~ 123 (887)
T KOG0467|consen 70 KDYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIE 123 (887)
T ss_pred CceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHc
Confidence 67899999999999999888888888899999888865 34444444 3543
No 331
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=93.44 E-value=0.21 Score=33.21 Aligned_cols=37 Identities=19% Similarity=0.156 Sum_probs=29.6
Q ss_pred eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECC
Q psy16649 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDIT 53 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~ 53 (83)
....+.+.|.+|++++-...-.-....|++++|.+.+
T Consensus 48 ~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~d 84 (447)
T COG3276 48 EDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVVAAD 84 (447)
T ss_pred CCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCc
Confidence 4457888999999998666566667889999999884
No 332
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=93.43 E-value=0.45 Score=31.04 Aligned_cols=64 Identities=17% Similarity=0.219 Sum_probs=49.0
Q ss_pred eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
..+.+.++|.+ .........++.++|.+++|.+. +--|+.+.++.++++++..+++.+..+|-|
T Consensus 216 ~~~~~vV~Dlp--~~~~~~t~~vL~~Sd~iviv~e~-sl~slR~ak~lld~l~~~r~~~~~p~lv~n 279 (366)
T COG4963 216 GSFDFVVVDLP--NIWTDWTRQVLSGSDEIVIVAEP-SLASLRNAKELLDELKRLRPNDPKPILVLN 279 (366)
T ss_pred ccCCeEEEcCC--CccchHHHHHHhcCCeEEEEecc-cHHHHHHHHHHHHHHHHhCCCCCCceEEee
Confidence 45778899988 33345667889999999999986 467788889999999998766665555543
No 333
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=93.39 E-value=0.037 Score=34.33 Aligned_cols=29 Identities=14% Similarity=0.108 Sum_probs=20.7
Q ss_pred CCcceeeeeeccCccc------------eEE----EEEEEeCCCc
Q psy16649 1 SGENLCTLQIFRGCFQ------------HNF----HINYRDTAGQ 29 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~------------~~~----~l~i~Dt~g~ 29 (83)
+||||++.++...... +.+ .+.++||+|.
T Consensus 129 vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPG~ 173 (276)
T TIGR03596 129 VGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLSDGLELLDTPGI 173 (276)
T ss_pred CCHHHHHHHHhCCCccccCCCCCeecceEEEEeCCCEEEEECCCc
Confidence 6999999988654321 222 4689999997
No 334
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=93.18 E-value=0.3 Score=29.82 Aligned_cols=62 Identities=13% Similarity=0.082 Sum_probs=30.1
Q ss_pred EEEEEeCCCchhhhcchhhhc--------cCCcEEEEEEECCCh---hHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 20 HINYRDTAGQERFRTITTAYY--------RGAMGIMLVYDITNE---KSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 20 ~l~i~Dt~g~~~~~~~~~~~~--------~~~~~~ilv~d~~~~---~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
..-|+||+||.++-..++... ...-+++++.|.... ..|-+. ++-.+.-...-++|.+.|-|
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~--~L~s~s~~~~~~lP~vnvls 164 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSS--LLLSLSIMLRLELPHVNVLS 164 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHH--HHHHHHHHHHHTSEEEEEE-
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHH--HHHHHHHHhhCCCCEEEeee
Confidence 788999999988765555444 455677788886643 334332 22122111113677776643
No 335
>PHA02518 ParA-like protein; Provisional
Probab=93.14 E-value=0.65 Score=27.12 Aligned_cols=51 Identities=16% Similarity=0.130 Sum_probs=33.1
Q ss_pred eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHH---HHHHHHHHHHH
Q psy16649 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFD---NIKNWIRNIEE 70 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~---~~~~w~~~~~~ 70 (83)
..+.+.|+|++|.. ......-+..+|.+|++...+ +.++. ++.+++++...
T Consensus 75 ~~~d~viiD~p~~~--~~~~~~~l~~aD~viip~~ps-~~~~~~~~~~~~~~~~~~~ 128 (211)
T PHA02518 75 SGYDYVVVDGAPQD--SELARAALRIADMVLIPVQPS-PFDIWAAPDLVELIKARQE 128 (211)
T ss_pred ccCCEEEEeCCCCc--cHHHHHHHHHCCEEEEEeCCC-hhhHHHHHHHHHHHHHHHh
Confidence 45788999999863 344566677899999987665 33333 44445554443
No 336
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=93.10 E-value=0.04 Score=34.45 Aligned_cols=12 Identities=25% Similarity=0.454 Sum_probs=9.8
Q ss_pred eEEEEEEEeCCC
Q psy16649 17 HNFHINYRDTAG 28 (83)
Q Consensus 17 ~~~~l~i~Dt~g 28 (83)
..++|.++||+|
T Consensus 61 ~~l~LtiiDTpG 72 (281)
T PF00735_consen 61 VKLNLTIIDTPG 72 (281)
T ss_dssp EEEEEEEEEEC-
T ss_pred cceEEEEEeCCC
Confidence 678899999998
No 337
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=93.02 E-value=0.73 Score=24.39 Aligned_cols=61 Identities=16% Similarity=0.060 Sum_probs=41.0
Q ss_pred EEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCC-CceEEEEeC
Q psy16649 20 HINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASA-NVEKMLLGN 83 (83)
Q Consensus 20 ~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~-~~piilvgN 83 (83)
.+.|.|+++... ......+..+|.++++.+. +..++..+..+.+.+++...+ ...+.+|.|
T Consensus 44 D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~~-~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvN 105 (106)
T cd03111 44 DYVVVDLGRSLD--EVSLAALDQADRVFLVTQQ-DLPSIRNAKRLLELLRVLDYSLPAKIELVLN 105 (106)
T ss_pred CEEEEeCCCCcC--HHHHHHHHHcCeEEEEecC-ChHHHHHHHHHHHHHHHcCCCCcCceEEEec
Confidence 567899987543 2334466788998888754 567778888888877765433 345556655
No 338
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=93.02 E-value=0.026 Score=32.71 Aligned_cols=14 Identities=14% Similarity=0.076 Sum_probs=11.3
Q ss_pred CCcceeeeeeccCc
Q psy16649 1 SGENLCTLQIFRGC 14 (83)
Q Consensus 1 ~GKss~~~~~~~~~ 14 (83)
+||||++.++....
T Consensus 128 vGKSslin~l~~~~ 141 (172)
T cd04178 128 VGKSSLINSLKRSR 141 (172)
T ss_pred CCHHHHHHHHhCcc
Confidence 69999999987643
No 339
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=92.88 E-value=0.17 Score=30.47 Aligned_cols=31 Identities=23% Similarity=0.387 Sum_probs=24.3
Q ss_pred CCcceeeeeeccC--ccc----------------------eEEEEEEEeCCCchh
Q psy16649 1 SGENLCTLQIFRG--CFQ----------------------HNFHINYRDTAGQER 31 (83)
Q Consensus 1 ~GKss~~~~~~~~--~~~----------------------~~~~l~i~Dt~g~~~ 31 (83)
+|||++++++... .|. ....+.+.||.|...
T Consensus 18 sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~ 72 (224)
T cd01851 18 SGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDG 72 (224)
T ss_pred CCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCc
Confidence 6999999998887 554 136788999999653
No 340
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=92.65 E-value=0.26 Score=27.74 Aligned_cols=16 Identities=13% Similarity=0.148 Sum_probs=10.5
Q ss_pred ccCCcEEEEEEECCCh
Q psy16649 40 YRGAMGIMLVYDITNE 55 (83)
Q Consensus 40 ~~~~~~~ilv~d~~~~ 55 (83)
++.+|.+++|.|..++
T Consensus 6 l~~aD~il~VvD~~~p 21 (157)
T cd01858 6 IDSSDVVIQVLDARDP 21 (157)
T ss_pred hhhCCEEEEEEECCCC
Confidence 4466777777776665
No 341
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=92.64 E-value=0.41 Score=25.60 Aligned_cols=14 Identities=14% Similarity=0.119 Sum_probs=11.3
Q ss_pred CCcceeeeeeccCc
Q psy16649 1 SGENLCTLQIFRGC 14 (83)
Q Consensus 1 ~GKss~~~~~~~~~ 14 (83)
+|||++...+...-
T Consensus 30 ~GKT~l~~~i~~~~ 43 (151)
T cd00009 30 TGKTTLARAIANEL 43 (151)
T ss_pred CCHHHHHHHHHHHh
Confidence 69999998887654
No 342
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=92.50 E-value=0.24 Score=29.39 Aligned_cols=55 Identities=24% Similarity=0.332 Sum_probs=28.8
Q ss_pred CCcceeeeeeccCccceEEEEEEEeCCCc--hhhhcchhhhccCCcEEEEEEECCCh
Q psy16649 1 SGENLCTLQIFRGCFQHNFHINYRDTAGQ--ERFRTITTAYYRGAMGIMLVYDITNE 55 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~~~~~l~i~Dt~g~--~~~~~~~~~~~~~~~~~ilv~d~~~~ 55 (83)
||||++..++.........+.-..|+-+. ++...+..........-+++++..+.
T Consensus 30 sGKT~l~~~~a~~~~~~g~~v~yi~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (218)
T cd01394 30 TGKTNIAIQLAVETAGQGKKVAYIDTEGLSSERFRQIAGDRPERAASSIIVFEPMDF 86 (218)
T ss_pred CCHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHhHChHhhhcCEEEEeCCCH
Confidence 79999999987654333344556676442 33333322211112223556776543
No 343
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=92.24 E-value=0.6 Score=25.25 Aligned_cols=40 Identities=15% Similarity=0.120 Sum_probs=26.2
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 42 GAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 42 ~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
.++..-+++|.. .+..+.....+++++... .++|++|+++
T Consensus 36 ~~~i~avvi~~d-~~~~~~~~~ll~~i~~~~-~~iPVFl~~~ 75 (115)
T PF03709_consen 36 FTDIAAVVISWD-GEEEDEAQELLDKIRERN-FGIPVFLLAE 75 (115)
T ss_dssp TTTEEEEEEECH-HHHHHHHHHHHHHHHHHS-TT-EEEEEES
T ss_pred CCCeeEEEEEcc-cccchhHHHHHHHHHHhC-CCCCEEEEec
Confidence 344444444444 666666778888888776 7999999864
No 344
>KOG4273|consensus
Probab=92.19 E-value=0.16 Score=31.87 Aligned_cols=27 Identities=15% Similarity=0.640 Sum_probs=23.4
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHH
Q psy16649 42 GAMGIMLVYDITNEKSFDNIKNWIRNI 68 (83)
Q Consensus 42 ~~~~~ilv~d~~~~~s~~~~~~w~~~~ 68 (83)
...+++.+||++....+..++.|+...
T Consensus 78 pl~a~vmvfdlse~s~l~alqdwl~ht 104 (418)
T KOG4273|consen 78 PLQAFVMVFDLSEKSGLDALQDWLPHT 104 (418)
T ss_pred ceeeEEEEEeccchhhhHHHHhhcccc
Confidence 457899999999999999999998743
No 345
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=92.08 E-value=0.044 Score=34.20 Aligned_cols=29 Identities=14% Similarity=0.115 Sum_probs=20.6
Q ss_pred CCcceeeeeeccCccc------------e----EEEEEEEeCCCc
Q psy16649 1 SGENLCTLQIFRGCFQ------------H----NFHINYRDTAGQ 29 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~------------~----~~~l~i~Dt~g~ 29 (83)
+||||++..+...... + .-.+.++||+|-
T Consensus 132 vGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPGi 176 (287)
T PRK09563 132 VGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKLGKGLELLDTPGI 176 (287)
T ss_pred CCHHHHHHHHhcCCccccCCCCCeEEEEEEEEeCCcEEEEECCCc
Confidence 6999999888654431 1 124789999996
No 346
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=91.99 E-value=0.99 Score=23.43 Aligned_cols=45 Identities=11% Similarity=0.135 Sum_probs=31.0
Q ss_pred EEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHH
Q psy16649 19 FHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIR 66 (83)
Q Consensus 19 ~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~ 66 (83)
+.+.+.|+++...- .....+..+|.++++.+. +..++..+.++++
T Consensus 40 ~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~~-~~~s~~~~~~~~~ 84 (104)
T cd02042 40 YDYIIIDTPPSLGL--LTRNALAAADLVLIPVQP-SPLDLDGLEKLLE 84 (104)
T ss_pred CCEEEEeCcCCCCH--HHHHHHHHCCEEEEeccC-CHHHHHHHHHHHH
Confidence 55678898875422 223566778999988865 5677777777766
No 347
>COG1161 Predicted GTPases [General function prediction only]
Probab=91.76 E-value=0.039 Score=35.08 Aligned_cols=29 Identities=17% Similarity=0.112 Sum_probs=21.3
Q ss_pred CCcceeeeeeccCccc----------------eEEEEEEEeCCCc
Q psy16649 1 SGENLCTLQIFRGCFQ----------------HNFHINYRDTAGQ 29 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~----------------~~~~l~i~Dt~g~ 29 (83)
+||||+++++....-. -.-.+.++||+|-
T Consensus 143 VGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~~i~LlDtPGi 187 (322)
T COG1161 143 VGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDDGIYLLDTPGI 187 (322)
T ss_pred CcHHHHHHHHhcccceeeCCCCceecceEEEEcCCCeEEecCCCc
Confidence 6999999998765542 2234788999994
No 348
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=91.76 E-value=0.91 Score=24.72 Aligned_cols=40 Identities=13% Similarity=-0.026 Sum_probs=28.7
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 42 GAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 42 ~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
+++++.+ +.++..+.+.++.+.+.+++...+++++++-|+
T Consensus 50 ~~d~V~i--S~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~ 89 (122)
T cd02071 50 DVDVIGL--SSLSGGHMTLFPEVIELLRELGAGDILVVGGGI 89 (122)
T ss_pred CCCEEEE--cccchhhHHHHHHHHHHHHhcCCCCCEEEEECC
Confidence 5565555 455678888899999999887545777776653
No 349
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=91.55 E-value=0.37 Score=27.12 Aligned_cols=26 Identities=12% Similarity=0.443 Sum_probs=11.8
Q ss_pred EEEEEECCChhHHHHHHHHHHHHHHh
Q psy16649 46 IMLVYDITNEKSFDNIKNWIRNIEEN 71 (83)
Q Consensus 46 ~ilv~d~~~~~s~~~~~~w~~~~~~~ 71 (83)
+++++.-.|.-.-+.+..|+..+.+.
T Consensus 32 ~IiVlNK~Dl~~~~~~~~~~~~~~~~ 57 (155)
T cd01849 32 LILVLNKADLVPKEVLRKWLAYLRHS 57 (155)
T ss_pred EEEEEechhcCCHHHHHHHHHHHHhh
Confidence 44555433332223455676555443
No 350
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=91.22 E-value=1.6 Score=26.81 Aligned_cols=63 Identities=6% Similarity=0.104 Sum_probs=35.0
Q ss_pred EEEEEEEeCCCchh-------------hhcchhhhccCC-cEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 18 NFHINYRDTAGQER-------------FRTITTAYYRGA-MGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 18 ~~~l~i~Dt~g~~~-------------~~~~~~~~~~~~-~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
...|.+.||+|-.. ...+...|+++. +.+++|.|.+..-+=+...+..+.+ .+...|+++|.|
T Consensus 124 ~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~l---d~~~~rti~ViT 200 (240)
T smart00053 124 VLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEV---DPQGERTIGVIT 200 (240)
T ss_pred CCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHH---HHcCCcEEEEEE
Confidence 36788999999631 234667788854 5777777765421111112222222 234566666654
No 351
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=90.79 E-value=0.44 Score=28.03 Aligned_cols=56 Identities=21% Similarity=0.352 Sum_probs=30.6
Q ss_pred CCcceeeeeeccCccceEEEEEEEeCCC--chhhhcchhhhccCCcEEEEEEECCChh
Q psy16649 1 SGENLCTLQIFRGCFQHNFHINYRDTAG--QERFRTITTAYYRGAMGIMLVYDITNEK 56 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~~~~~l~i~Dt~g--~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 56 (83)
||||++..++..+......+.-..|+-+ .++...+...+......=+++++..+..
T Consensus 23 sGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~ 80 (209)
T TIGR02237 23 SGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFD 80 (209)
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHH
Confidence 7999999998765433344566778864 3344443332222211224556665443
No 352
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=90.76 E-value=1.1 Score=26.58 Aligned_cols=28 Identities=29% Similarity=0.268 Sum_probs=18.3
Q ss_pred CCcceeeeeeccCccceE------EEEEEEeCCC
Q psy16649 1 SGENLCTLQIFRGCFQHN------FHINYRDTAG 28 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~~~------~~l~i~Dt~g 28 (83)
||||++..++........ ...-..|+.+
T Consensus 30 sGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 30 SGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 799999998865532222 4555667765
No 353
>KOG1486|consensus
Probab=90.71 E-value=0.35 Score=30.45 Aligned_cols=68 Identities=18% Similarity=0.130 Sum_probs=43.5
Q ss_pred CCcceeeeeeccCccc------------------eEEEEEEEeCCCchhhh-------cchhhhccCCcEEEEEEECCCh
Q psy16649 1 SGENLCTLQIFRGCFQ------------------HNFHINYRDTAGQERFR-------TITTAYYRGAMGIMLVYDITNE 55 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~------------------~~~~l~i~Dt~g~~~~~-------~~~~~~~~~~~~~ilv~d~~~~ 55 (83)
+|||+++..+....-. +..++|+.|.+|--.-. ...-.--+.||.++.|.|.+..
T Consensus 73 VGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArtaDlilMvLDatk~ 152 (364)
T KOG1486|consen 73 VGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVARTADLILMVLDATKS 152 (364)
T ss_pred ccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeecccEEEEEecCCcc
Confidence 4888888776654433 55689999998732211 1112345679999999999987
Q ss_pred hHHHH-HHHHHHHH
Q psy16649 56 KSFDN-IKNWIRNI 68 (83)
Q Consensus 56 ~s~~~-~~~w~~~~ 68 (83)
+--.+ +++-++.+
T Consensus 153 e~qr~~le~ELe~v 166 (364)
T KOG1486|consen 153 EDQREILEKELEAV 166 (364)
T ss_pred hhHHHHHHHHHHHh
Confidence 76543 34444444
No 354
>PF14784 ECIST_Cterm: C-terminal domain of the ECSIT protein
Probab=90.22 E-value=0.93 Score=25.24 Aligned_cols=39 Identities=21% Similarity=0.461 Sum_probs=31.4
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHHhcC--CCceEEE
Q psy16649 42 GAMGIMLVYDITNEKSFDNIKNWIRNIEENAS--ANVEKML 80 (83)
Q Consensus 42 ~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~--~~~piil 80 (83)
+-|+.|+...++...+=..+..|+..+++.++ ..+|++.
T Consensus 83 q~dGti~Amc~tg~~~~~sL~~WI~~Lq~~NP~L~~ipV~F 123 (126)
T PF14784_consen 83 QEDGTIFAMCMTGTSDKDSLLSWIRGLQETNPNLAQIPVLF 123 (126)
T ss_pred eccceEEEEEeccCCCHHHHHHHHHHHHhhCCchhcceEEE
Confidence 45788888888888888889999999998664 5788765
No 355
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=90.11 E-value=1.4 Score=27.29 Aligned_cols=44 Identities=11% Similarity=0.143 Sum_probs=36.1
Q ss_pred ccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 40 YRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 40 ~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
--.+|.++..|..-++..=+.+.+-++.++++.+++.|+.+|=|
T Consensus 152 AA~adfVi~~YNP~s~~R~~~~~~a~eil~~~r~~~tpVgivrn 195 (249)
T COG1010 152 AAEADFVIALYNPISKRRPEQLGRAFEILREHRSPDTPVGIVRN 195 (249)
T ss_pred HhhCCEEEEEECCccccchHHHHHHHHHHHHhcCCCCcEEEEec
Confidence 34689999999888887777778888888888888999998754
No 356
>KOG0461|consensus
Probab=89.91 E-value=0.27 Score=32.26 Aligned_cols=35 Identities=20% Similarity=0.356 Sum_probs=20.6
Q ss_pred eEEEEEEEeCCCchhhhcchhhhccCC---cEEEEEEECCC
Q psy16649 17 HNFHINYRDTAGQERFRTITTAYYRGA---MGIMLVYDITN 54 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~---~~~ilv~d~~~ 54 (83)
++..+.+.|++|+... .+..+.+| |..++|.|+..
T Consensus 68 e~lq~tlvDCPGHasL---IRtiiggaqiiDlm~lviDv~k 105 (522)
T KOG0461|consen 68 EQLQFTLVDCPGHASL---IRTIIGGAQIIDLMILVIDVQK 105 (522)
T ss_pred ccceeEEEeCCCcHHH---HHHHHhhhheeeeeeEEEehhc
Confidence 6677788999998653 22223332 34456666654
No 357
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=89.77 E-value=0.27 Score=30.40 Aligned_cols=51 Identities=6% Similarity=0.169 Sum_probs=26.6
Q ss_pred CCcceeeeeeccCccceEEEEEEEeCCCc--hhhhcchhhhccCCcEEEEEE-ECC
Q psy16649 1 SGENLCTLQIFRGCFQHNFHINYRDTAGQ--ERFRTITTAYYRGAMGIMLVY-DIT 53 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~~~~~l~i~Dt~g~--~~~~~~~~~~~~~~~~~ilv~-d~~ 53 (83)
|||||++..+......+. |.+...... .....+....-....-+|+.+ |++
T Consensus 63 tGKSSlVkall~~y~~~G--LRlIev~k~~L~~l~~l~~~l~~~~~kFIlf~DDLs 116 (249)
T PF05673_consen 63 TGKSSLVKALLNEYADQG--LRLIEVSKEDLGDLPELLDLLRDRPYKFILFCDDLS 116 (249)
T ss_pred CCHHHHHHHHHHHHhhcC--ceEEEECHHHhccHHHHHHHHhcCCCCEEEEecCCC
Confidence 799999998776553333 445554432 233344333333334455544 443
No 358
>PRK13796 GTPase YqeH; Provisional
Probab=89.05 E-value=0.92 Score=29.45 Aligned_cols=48 Identities=21% Similarity=0.324 Sum_probs=27.0
Q ss_pred hhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 30 ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 30 ~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
+.|.......-...+.+++|.|+.+.. ..|.+++.+.. .+.|+++|+|
T Consensus 57 ~~~~~~l~~i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~-~~kpviLViN 104 (365)
T PRK13796 57 DDFLKLLNGIGDSDALVVNVVDIFDFN-----GSWIPGLHRFV-GNNPVLLVGN 104 (365)
T ss_pred HHHHHHHHhhcccCcEEEEEEECccCC-----CchhHHHHHHh-CCCCEEEEEE
Confidence 345444333322333777888877643 34566666554 3567777776
No 359
>KOG1491|consensus
Probab=89.04 E-value=0.38 Score=31.30 Aligned_cols=37 Identities=16% Similarity=0.026 Sum_probs=24.8
Q ss_pred eEEEEEEEeCCCchhh----hcc---hhhhccCCcEEEEEEECC
Q psy16649 17 HNFHINYRDTAGQERF----RTI---TTAYYRGAMGIMLVYDIT 53 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~----~~~---~~~~~~~~~~~ilv~d~~ 53 (83)
.+..|++.|+||--+- ..+ --..+|.+|+++-|.+..
T Consensus 82 vpa~l~v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 82 VPAFLTVYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred eeeeEEEEeecccccCcccCcCchHHHHHhhhhccceeEEEEec
Confidence 6788999999984332 222 344567899988766544
No 360
>KOG1490|consensus
Probab=88.76 E-value=0.81 Score=31.41 Aligned_cols=80 Identities=20% Similarity=0.165 Sum_probs=44.0
Q ss_pred CCcceeeeeeccCccc------------------eEEEEEEEeCCCchhh----hcchh-------hhccCCcEEEEEEE
Q psy16649 1 SGENLCTLQIFRGCFQ------------------HNFHINYRDTAGQERF----RTITT-------AYYRGAMGIMLVYD 51 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~------------------~~~~l~i~Dt~g~~~~----~~~~~-------~~~~~~~~~ilv~d 51 (83)
+||||+.......... +-...|+.||+|--+. +.... ..++ .+++++-|
T Consensus 179 VGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITALAHLr--aaVLYfmD 256 (620)
T KOG1490|consen 179 VGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLR--SAVLYFMD 256 (620)
T ss_pred CCcHhhcccccccccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHHHhh--hhheeeee
Confidence 4888877765554433 4457788899984221 11111 1222 35778889
Q ss_pred CCChh--HHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 52 ITNEK--SFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 52 ~~~~~--s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
++..- |..+=-++++.++... .+-|.|+|.|
T Consensus 257 LSe~CGySva~QvkLfhsIKpLF-aNK~~IlvlN 289 (620)
T KOG1490|consen 257 LSEMCGYSVAAQVKLYHSIKPLF-ANKVTILVLN 289 (620)
T ss_pred chhhhCCCHHHHHHHHHHhHHHh-cCCceEEEee
Confidence 98753 3333234555555544 4556666654
No 361
>KOG0469|consensus
Probab=88.39 E-value=0.36 Score=33.22 Aligned_cols=38 Identities=32% Similarity=0.428 Sum_probs=33.7
Q ss_pred eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCC
Q psy16649 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITN 54 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~ 54 (83)
..+-+++.|.+|+-.|.+-...-++-.|+.++|.|.-+
T Consensus 96 ~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~ 133 (842)
T KOG0469|consen 96 NGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVS 133 (842)
T ss_pred cceeEEeccCCCcccchhhhhheeEeccCcEEEEEccC
Confidence 56889999999999999888888999999999998765
No 362
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=88.09 E-value=1.8 Score=26.87 Aligned_cols=43 Identities=26% Similarity=0.358 Sum_probs=30.0
Q ss_pred eEEEEEEEeC-CCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHH
Q psy16649 17 HNFHINYRDT-AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKN 63 (83)
Q Consensus 17 ~~~~l~i~Dt-~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~ 63 (83)
....+-+.|| ||-|.|.. .-.+++|.+|.|.|.+ .+|+...++
T Consensus 132 ~~~e~VivDtEAGiEHfgR---g~~~~vD~vivVvDpS-~~sl~taer 175 (255)
T COG3640 132 NRYEVVIVDTEAGIEHFGR---GTIEGVDLVIVVVDPS-YKSLRTAER 175 (255)
T ss_pred ccCcEEEEecccchhhhcc---ccccCCCEEEEEeCCc-HHHHHHHHH
Confidence 4467788998 78887743 3356899999999986 445444443
No 363
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=87.89 E-value=0.59 Score=26.74 Aligned_cols=26 Identities=8% Similarity=-0.161 Sum_probs=16.2
Q ss_pred hhhcchhhhccCCcEEEEEEECCChh
Q psy16649 31 RFRTITTAYYRGAMGIMLVYDITNEK 56 (83)
Q Consensus 31 ~~~~~~~~~~~~~~~~ilv~d~~~~~ 56 (83)
+..........+||.+++|+|.+++.
T Consensus 8 ~~~~~~~~~i~~aD~il~v~D~~~~~ 33 (171)
T cd01856 8 KALRQIKEKLKLVDLVIEVRDARIPL 33 (171)
T ss_pred HHHHHHHHHHhhCCEEEEEeeccCcc
Confidence 33344455666777777777776553
No 364
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=86.21 E-value=0.44 Score=28.00 Aligned_cols=29 Identities=14% Similarity=0.181 Sum_probs=21.2
Q ss_pred CCcceeeeeeccCccc----eEEEEEEEeCCCc
Q psy16649 1 SGENLCTLQIFRGCFQ----HNFHINYRDTAGQ 29 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~----~~~~l~i~Dt~g~ 29 (83)
||||+++..+...-.. ..+.+.+.|..|.
T Consensus 49 sGKS~~l~~ll~~l~~~~~p~~~~l~iiD~k~~ 81 (205)
T PF01580_consen 49 SGKSTLLRTLLLSLALTYSPDDVQLYIIDPKGS 81 (205)
T ss_dssp SSHHHHHHHHHHHHHTT--TTTEEEEEE-TTSS
T ss_pred CCccHHHHHHHHHHHHHhcCCccEEEEEcCCcc
Confidence 7999988875544333 7799999999876
No 365
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=86.00 E-value=3.1 Score=23.30 Aligned_cols=40 Identities=13% Similarity=0.051 Sum_probs=28.1
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 42 GAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 42 ~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
+++++.+ +.....+...++++++++++...+++++++-|+
T Consensus 54 ~~d~V~l--S~~~~~~~~~~~~~~~~L~~~~~~~~~i~vGG~ 93 (137)
T PRK02261 54 DADAILV--SSLYGHGEIDCRGLREKCIEAGLGDILLYVGGN 93 (137)
T ss_pred CCCEEEE--cCccccCHHHHHHHHHHHHhcCCCCCeEEEECC
Confidence 4555444 555557788889999999887556787777664
No 366
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=85.66 E-value=3.2 Score=24.78 Aligned_cols=13 Identities=23% Similarity=0.133 Sum_probs=10.7
Q ss_pred CCcceeeeeeccC
Q psy16649 1 SGENLCTLQIFRG 13 (83)
Q Consensus 1 ~GKss~~~~~~~~ 13 (83)
||||++..++...
T Consensus 30 sGKT~l~~~l~~~ 42 (235)
T cd01123 30 SGKTQLCHQLAVT 42 (235)
T ss_pred CCHHHHHHHHHHH
Confidence 7999999998643
No 367
>KOG1143|consensus
Probab=85.54 E-value=8.9 Score=25.85 Aligned_cols=19 Identities=16% Similarity=0.426 Sum_probs=14.2
Q ss_pred eEEEEEEEeCCCchhhhcc
Q psy16649 17 HNFHINYRDTAGQERFRTI 35 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~ 35 (83)
..-.+.+.|.+|+.+|...
T Consensus 247 SSKlvTfiDLAGh~kY~~T 265 (591)
T KOG1143|consen 247 SSKLVTFIDLAGHAKYQKT 265 (591)
T ss_pred hcceEEEeecccchhhhee
Confidence 3446778999999998653
No 368
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=85.52 E-value=0.22 Score=28.81 Aligned_cols=14 Identities=7% Similarity=0.095 Sum_probs=11.6
Q ss_pred CCcceeeeeeccCc
Q psy16649 1 SGENLCTLQIFRGC 14 (83)
Q Consensus 1 ~GKss~~~~~~~~~ 14 (83)
+|||||++.+....
T Consensus 46 vGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 46 VGKSSLINALLPEA 59 (161)
T ss_dssp SSHHHHHHHHHTSS
T ss_pred CCHHHHHHHHHhhc
Confidence 69999999987763
No 369
>PRK04195 replication factor C large subunit; Provisional
Probab=85.48 E-value=2.1 Score=28.80 Aligned_cols=25 Identities=12% Similarity=0.045 Sum_probs=14.7
Q ss_pred CCcceeeeeeccCccceEEEEEEEe
Q psy16649 1 SGENLCTLQIFRGCFQHNFHINYRD 25 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~~~~~l~i~D 25 (83)
+|||++...+....--..+.++.-|
T Consensus 50 ~GKTtla~ala~el~~~~ielnasd 74 (482)
T PRK04195 50 VGKTSLAHALANDYGWEVIELNASD 74 (482)
T ss_pred CCHHHHHHHHHHHcCCCEEEEcccc
Confidence 6999999887654322333443333
No 370
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=85.31 E-value=0.98 Score=29.59 Aligned_cols=37 Identities=16% Similarity=0.106 Sum_probs=25.6
Q ss_pred eEEEEEEEeCCCchh----hhcc---hhhhccCCcEEEEEEECC
Q psy16649 17 HNFHINYRDTAGQER----FRTI---TTAYYRGAMGIMLVYDIT 53 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~----~~~~---~~~~~~~~~~~ilv~d~~ 53 (83)
....+++.|.+|--. -+.+ --..+|.+|+++-|.|..
T Consensus 65 ~~~~ve~vDIAGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 65 RPAPVEFVDIAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred EeeeeEEEEecccCCCcccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 557789999987422 2223 334567899999988776
No 371
>PF10551 MULE: MULE transposase domain; InterPro: IPR018289 This entry represents a domain found in Mutator-like elements (MULE)-encoded tranposases, some of which also contain a zinc-finger motif [, ]. This domain is also found in a transposase for the insertion sequence element IS256 in transposon Tn4001 [].
Probab=85.03 E-value=2.5 Score=21.42 Aligned_cols=37 Identities=11% Similarity=0.354 Sum_probs=26.8
Q ss_pred cEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEE
Q psy16649 44 MGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLL 81 (83)
Q Consensus 44 ~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilv 81 (83)
.++++.|.+.+.++-+.....++.+++..+.. |.+++
T Consensus 25 ~~~~v~~~l~~~e~~~~~~~~l~~~~~~~~~~-p~~ii 61 (93)
T PF10551_consen 25 RGFPVAFALVSSESEESYEWFLEKLKEAMPQK-PKVII 61 (93)
T ss_pred CEEEEEEEEEcCCChhhhHHHHHHhhhccccC-ceeee
Confidence 56788888888888888877777777665444 66654
No 372
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=84.82 E-value=4 Score=25.79 Aligned_cols=30 Identities=13% Similarity=0.420 Sum_probs=26.1
Q ss_pred CcEEEEEEECCChhHHHHHHHHHHHHHHhc
Q psy16649 43 AMGIMLVYDITNEKSFDNIKNWIRNIEENA 72 (83)
Q Consensus 43 ~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~ 72 (83)
-+-+-++.|+.+++.|.++..++.++++..
T Consensus 51 ~~kvAv~iDiRs~~~~~~l~~~l~~l~~~~ 80 (286)
T COG1660 51 ITKVAVVIDVRSREFFGDLEEVLDELKDNG 80 (286)
T ss_pred CceEEEEEecccchhHHHHHHHHHHHHhcC
Confidence 356778899999999999999999998764
No 373
>KOG0463|consensus
Probab=84.68 E-value=9.9 Score=25.67 Aligned_cols=15 Identities=33% Similarity=0.625 Sum_probs=12.3
Q ss_pred EEEEEeCCCchhhhc
Q psy16649 20 HINYRDTAGQERFRT 34 (83)
Q Consensus 20 ~l~i~Dt~g~~~~~~ 34 (83)
-+.+.|.+|+|+|-.
T Consensus 220 viTFIDLAGHEkYLK 234 (641)
T KOG0463|consen 220 VITFIDLAGHEKYLK 234 (641)
T ss_pred eEEEEeccchhhhhh
Confidence 467889999999954
No 374
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=84.62 E-value=0.26 Score=26.40 Aligned_cols=14 Identities=7% Similarity=0.043 Sum_probs=11.4
Q ss_pred CCcceeeeeeccCc
Q psy16649 1 SGENLCTLQIFRGC 14 (83)
Q Consensus 1 ~GKss~~~~~~~~~ 14 (83)
||||+++..+...-
T Consensus 9 ~GKT~l~~~la~~l 22 (132)
T PF00004_consen 9 TGKTTLARALAQYL 22 (132)
T ss_dssp SSHHHHHHHHHHHT
T ss_pred CCeeHHHHHHHhhc
Confidence 79999999887663
No 375
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=83.96 E-value=0.3 Score=31.63 Aligned_cols=27 Identities=22% Similarity=0.021 Sum_probs=22.1
Q ss_pred CCcceeeeeeccCccceEEEEEEEeCC
Q psy16649 1 SGENLCTLQIFRGCFQHNFHINYRDTA 27 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~~~~~l~i~Dt~ 27 (83)
|||||+++.+..-.....--+.||||+
T Consensus 184 SGKTTlLNal~~~i~~~eRvItiEDta 210 (355)
T COG4962 184 SGKTTLLNALSGFIDSDERVITIEDTA 210 (355)
T ss_pred CCHHHHHHHHHhcCCCcccEEEEeehh
Confidence 799999999877666666778899986
No 376
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.79 E-value=5.7 Score=30.09 Aligned_cols=43 Identities=16% Similarity=0.291 Sum_probs=28.3
Q ss_pred cCCcEEEEEEECCChhH---------HHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 41 RGAMGIMLVYDITNEKS---------FDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 41 ~~~~~~ilv~d~~~~~s---------~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
+..+|+|+..|+.+.-+ ...++.=++++++...-.+|+.|+.|
T Consensus 213 ~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lT 264 (1188)
T COG3523 213 RPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLT 264 (1188)
T ss_pred CCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEe
Confidence 35899999999876421 11233345566666667899998875
No 377
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=83.75 E-value=5.5 Score=26.83 Aligned_cols=33 Identities=21% Similarity=0.191 Sum_probs=20.6
Q ss_pred EEEEEeCCCchhhhc--chhhhccCCcEEEEEEEC
Q psy16649 20 HINYRDTAGQERFRT--ITTAYYRGAMGIMLVYDI 52 (83)
Q Consensus 20 ~l~i~Dt~g~~~~~~--~~~~~~~~~~~~ilv~d~ 52 (83)
-+.+.||.|+|+|-. ++...-.+.|..+++...
T Consensus 202 lVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaA 236 (527)
T COG5258 202 LVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAA 236 (527)
T ss_pred EEEEEecCCccHHHHHHHHHHhccccceEEEEEEc
Confidence 456789999999843 444444555555554433
No 378
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=83.57 E-value=0.63 Score=27.57 Aligned_cols=26 Identities=12% Similarity=-0.017 Sum_probs=14.9
Q ss_pred CCcceeeeeeccCccceEEEEEEEeC
Q psy16649 1 SGENLCTLQIFRGCFQHNFHINYRDT 26 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~~~~~l~i~Dt 26 (83)
||||++...+..........+...+.
T Consensus 49 ~GKT~la~~~~~~~~~~~~~~~~i~~ 74 (226)
T TIGR03420 49 SGKSHLLQAACAAAEERGKSAIYLPL 74 (226)
T ss_pred CCHHHHHHHHHHHHHhcCCcEEEEeH
Confidence 79999998876543222223334443
No 379
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=83.55 E-value=0.26 Score=32.95 Aligned_cols=70 Identities=14% Similarity=0.157 Sum_probs=45.0
Q ss_pred CCcceeeeeeccCccceEEEEEEEeC----CCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQHNFHINYRDT----AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE 70 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~~~~~l~i~Dt----~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~ 70 (83)
||||++++-+..-.-++.-.+.+=|. -..|+|+.+...-+.+-+-+==.+......|-+.+..|++.+.-
T Consensus 360 sGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e~~as~q~i~~~LqrLel 433 (546)
T COG4615 360 SGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLEL 433 (546)
T ss_pred CcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCccCCChHHHHHHHHHHHH
Confidence 79999887665444343333333222 23578988887777766555444455556778889999887743
No 380
>KOG0410|consensus
Probab=83.27 E-value=1.5 Score=28.65 Aligned_cols=62 Identities=15% Similarity=0.142 Sum_probs=38.5
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchh-hh-cc------hhhhccCCcEEEEEEECC
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQER-FR-TI------TTAYYRGAMGIMLVYDIT 53 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~-~~-~~------~~~~~~~~~~~ilv~d~~ 53 (83)
||||+|+.++..-... ..-.+-+-||.|-=. .+ .+ +-.-...+|.++-|-|++
T Consensus 189 aGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATLeeVaeadlllHvvDiS 268 (410)
T KOG0410|consen 189 AGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATLEEVAEADLLLHVVDIS 268 (410)
T ss_pred ccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHHHHHhhcceEEEEeecC
Confidence 7999999987632221 334555678887311 11 11 122345799999999999
Q ss_pred ChhHHHHHH
Q psy16649 54 NEKSFDNIK 62 (83)
Q Consensus 54 ~~~s~~~~~ 62 (83)
.++--+...
T Consensus 269 hP~ae~q~e 277 (410)
T KOG0410|consen 269 HPNAEEQRE 277 (410)
T ss_pred CccHHHHHH
Confidence 986544433
No 381
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=83.18 E-value=0.2 Score=28.93 Aligned_cols=32 Identities=16% Similarity=0.350 Sum_probs=19.8
Q ss_pred CCcceeeeeeccCccceEEEEEE---------EeCCCchhh
Q psy16649 1 SGENLCTLQIFRGCFQHNFHINY---------RDTAGQERF 32 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~~~~~l~i---------~Dt~g~~~~ 32 (83)
|||||++.++...--.+.+++.. .|+.|.+.|
T Consensus 13 SGKTTLie~lv~~L~~~G~rVa~iKH~hh~~~~D~~GkDs~ 53 (161)
T COG1763 13 SGKTTLIEKLVRKLKARGYRVATVKHAHHDFDLDKPGKDTY 53 (161)
T ss_pred CChhhHHHHHHHHHHhCCcEEEEEEecCCCCCCCCCCCccc
Confidence 79999999985533223333333 467776655
No 382
>KOG0780|consensus
Probab=82.97 E-value=4.1 Score=27.35 Aligned_cols=50 Identities=18% Similarity=0.298 Sum_probs=29.8
Q ss_pred eEEEEEEEeCCCchh-----hhcchh-hhccCCcEEEEEEECCChhH-HHHHHHHHH
Q psy16649 17 HNFHINYRDTAGQER-----FRTITT-AYYRGAMGIMLVYDITNEKS-FDNIKNWIR 66 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~-----~~~~~~-~~~~~~~~~ilv~d~~~~~s-~~~~~~w~~ 66 (83)
+++.+.|.||+|... |..+.. .-.-+.|-+|+|-|.+--+. +...+.+-+
T Consensus 182 e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~ 238 (483)
T KOG0780|consen 182 ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKE 238 (483)
T ss_pred cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHH
Confidence 778999999999432 222221 11224678888888765443 444444433
No 383
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=82.46 E-value=2.3 Score=25.33 Aligned_cols=27 Identities=26% Similarity=0.271 Sum_probs=18.1
Q ss_pred CCcceeeeeeccCccceEEEEEEEeCC
Q psy16649 1 SGENLCTLQIFRGCFQHNFHINYRDTA 27 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~~~~~l~i~Dt~ 27 (83)
+|||++..++..+......+.-+.|+-
T Consensus 34 sGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 34 SGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 699999999876443333445566766
No 384
>KOG2655|consensus
Probab=82.15 E-value=0.6 Score=30.49 Aligned_cols=13 Identities=23% Similarity=0.342 Sum_probs=10.9
Q ss_pred eEEEEEEEeCCCc
Q psy16649 17 HNFHINYRDTAGQ 29 (83)
Q Consensus 17 ~~~~l~i~Dt~g~ 29 (83)
..++|.+.||+|-
T Consensus 77 ~~l~LtvidtPGf 89 (366)
T KOG2655|consen 77 VKLNLTVIDTPGF 89 (366)
T ss_pred eEEeeEEeccCCC
Confidence 6788999999984
No 385
>PF12327 FtsZ_C: FtsZ family, C-terminal domain; InterPro: IPR024757 The FtsZ family of proteins are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ is a GTPase, like tubulin []. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea []. This entry represents a domain of FtsZ. In most FtsZ proteins is found in the C terminus, except in some alphaproteobacteria proteins where there is an extension C-terminal domain TIGR03483 from TIGRFAMs.; PDB: 2RHO_B 2RHJ_A 2VXY_A 2RHL_B 2RHH_A 2VAM_A 1W5F_B 2R75_1 2R6R_1 1RQ7_A ....
Probab=81.89 E-value=5.7 Score=20.80 Aligned_cols=45 Identities=16% Similarity=0.271 Sum_probs=32.7
Q ss_pred chhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEE
Q psy16649 35 ITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKM 79 (83)
Q Consensus 35 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~pii 79 (83)
+....+++|.++++-+.....-++.++..-.+.++++.+++.-++
T Consensus 28 Ll~~~i~~A~~vLvni~~~~d~~l~ev~~~~~~i~~~~~~~a~ii 72 (95)
T PF12327_consen 28 LLDVDIKGAKGVLVNITGGPDLSLSEVNEAMEIIREKADPDANII 72 (95)
T ss_dssp TSTS-GGG-SEEEEEEEE-TTS-HHHHHHHHHHHHHHSSTTSEEE
T ss_pred cccCChHHhceEEEEEEcCCCCCHHHHHHHHHHHHHHhhcCceEE
Confidence 444678899999999988878899999999999988876655544
No 386
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=81.53 E-value=1.4 Score=28.87 Aligned_cols=35 Identities=20% Similarity=-0.045 Sum_probs=23.9
Q ss_pred EEEEEEeCCCchhh-------hcchhhhccCCcEEEEEEECC
Q psy16649 19 FHINYRDTAGQERF-------RTITTAYYRGAMGIMLVYDIT 53 (83)
Q Consensus 19 ~~l~i~Dt~g~~~~-------~~~~~~~~~~~~~~ilv~d~~ 53 (83)
..+.+.|.+|--.- ..-.-...+.+|+++.|.+..
T Consensus 67 a~i~~~DiaGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 67 TTTEFVDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred ceEEEEeccccccchhcccCcchHHHHHHHhCCEEEEEEeCC
Confidence 46788999984321 112334577899999999874
No 387
>PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins []. ; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A.
Probab=81.11 E-value=5.9 Score=22.74 Aligned_cols=38 Identities=13% Similarity=0.239 Sum_probs=25.6
Q ss_pred cCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEe
Q psy16649 41 RGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLG 82 (83)
Q Consensus 41 ~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvg 82 (83)
..+|.+|+.+- .+=++++.++..+....+++.+++|||
T Consensus 68 ~~~D~vvly~P----KaK~e~~~lL~~l~~~L~~g~~i~vVG 105 (155)
T PF08468_consen 68 QDFDTVVLYWP----KAKAEAQYLLANLLSHLPPGTEIFVVG 105 (155)
T ss_dssp TT-SEEEEE------SSHHHHHHHHHHHHTTS-TT-EEEEEE
T ss_pred cCCCEEEEEcc----CcHHHHHHHHHHHHHhCCCCCEEEEEe
Confidence 35788888774 444567778888887777899999998
No 388
>COG1162 Predicted GTPases [General function prediction only]
Probab=81.04 E-value=0.86 Score=29.02 Aligned_cols=13 Identities=8% Similarity=0.110 Sum_probs=11.0
Q ss_pred CCcceeeeeeccC
Q psy16649 1 SGENLCTLQIFRG 13 (83)
Q Consensus 1 ~GKss~~~~~~~~ 13 (83)
+|||||++++...
T Consensus 175 VGKSSLiN~L~p~ 187 (301)
T COG1162 175 VGKSTLINALLPE 187 (301)
T ss_pred CcHHHHHHhhCch
Confidence 5999999998763
No 389
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=80.69 E-value=3.2 Score=26.02 Aligned_cols=13 Identities=8% Similarity=0.215 Sum_probs=10.0
Q ss_pred CCcceeeeeeccC
Q psy16649 1 SGENLCTLQIFRG 13 (83)
Q Consensus 1 ~GKss~~~~~~~~ 13 (83)
+|||++...+...
T Consensus 54 ~GKT~la~~l~~~ 66 (316)
T PHA02544 54 TGKTTVAKALCNE 66 (316)
T ss_pred CCHHHHHHHHHHH
Confidence 6999998887553
No 390
>KOG2052|consensus
Probab=80.55 E-value=4.4 Score=27.59 Aligned_cols=41 Identities=20% Similarity=0.379 Sum_probs=36.7
Q ss_pred EEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 20 HINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 20 ~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
.+++..+-|+.||...|.--+++-+.++=+|..+++.|+-+
T Consensus 212 qI~L~e~IGkGRyGEVwrG~wrGe~VAVKiF~srdE~SWfr 252 (513)
T KOG2052|consen 212 QIVLQEIIGKGRFGEVWRGRWRGEDVAVKIFSSRDERSWFR 252 (513)
T ss_pred eeEEEEEecCccccceeeccccCCceEEEEecccchhhhhh
Confidence 56778899999999999999999999999999999999443
No 391
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=80.54 E-value=13 Score=24.07 Aligned_cols=64 Identities=16% Similarity=0.122 Sum_probs=39.5
Q ss_pred eEEEEEEEeCCCch-------hhhcc------hhh---hccCCcEEEEEEECCChh----HHHHHHHHHHHHHHhcCCCc
Q psy16649 17 HNFHINYRDTAGQE-------RFRTI------TTA---YYRGAMGIMLVYDITNEK----SFDNIKNWIRNIEENASANV 76 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~-------~~~~~------~~~---~~~~~~~~ilv~d~~~~~----s~~~~~~w~~~~~~~~~~~~ 76 (83)
-.+-+.|||+.-.+ +|... +.. ---++|.+-+....++++ +-+++....+.+.+. .++
T Consensus 48 p~ia~~v~D~~~~~~~~~i~~~~~~v~~~p~~~Ak~q~~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~ea--vd~ 125 (319)
T PRK04452 48 PVIAMEVFDMPPEDWPEAVKEPFGDVMNDPAAWAKKCVEEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQA--VDV 125 (319)
T ss_pred CeEEEEEecCCCcccHHHHHHHHHHHhcCHHHHHHHHHHHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHh--CCC
Confidence 45899999996533 33332 111 134789998988777775 344455566666544 478
Q ss_pred eEEEEe
Q psy16649 77 EKMLLG 82 (83)
Q Consensus 77 piilvg 82 (83)
|++|.|
T Consensus 126 PL~Id~ 131 (319)
T PRK04452 126 PLIIGG 131 (319)
T ss_pred CEEEec
Confidence 886653
No 392
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=80.23 E-value=8.7 Score=21.87 Aligned_cols=40 Identities=8% Similarity=0.061 Sum_probs=28.0
Q ss_pred CCcEEEEEEECCCh----hHHHHHHHHHHHHHHhcCCCceEEEEe
Q psy16649 42 GAMGIMLVYDITNE----KSFDNIKNWIRNIEENASANVEKMLLG 82 (83)
Q Consensus 42 ~~~~~ilv~d~~~~----~s~~~~~~w~~~~~~~~~~~~piilvg 82 (83)
+.+.+++++-.+|- +-.+++...++.+++.. ++.|+++++
T Consensus 57 ~pd~vii~~G~ND~~~~~~~~~~~~~~i~~i~~~~-p~~~iil~~ 100 (177)
T cd01844 57 PADLYIIDCGPNIVGAEAMVRERLGPLVKGLRETH-PDTPILLVS 100 (177)
T ss_pred CCCEEEEEeccCCCccHHHHHHHHHHHHHHHHHHC-cCCCEEEEe
Confidence 67888888866654 23456677777777765 678888764
No 393
>PTZ00293 thymidine kinase; Provisional
Probab=79.82 E-value=2.6 Score=25.56 Aligned_cols=35 Identities=6% Similarity=0.085 Sum_probs=20.5
Q ss_pred cCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEe
Q psy16649 41 RGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLG 82 (83)
Q Consensus 41 ~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvg 82 (83)
+..|++++ +..+-|..+.++.+.+.. .+.|+++.|
T Consensus 76 ~~~dvI~I----DEaQFf~~i~~~~~~l~~---~g~~VivaG 110 (211)
T PTZ00293 76 KNYDVIAI----DEGQFFPDLVEFSEAAAN---LGKIVIVAA 110 (211)
T ss_pred cCCCEEEE----EchHhhHhHHHHHHHHHH---CCCeEEEEe
Confidence 45566554 445556666666666652 467777665
No 394
>PRK04017 hypothetical protein; Provisional
Probab=79.39 E-value=6.6 Score=22.09 Aligned_cols=26 Identities=12% Similarity=0.355 Sum_probs=21.4
Q ss_pred hhHHHHHHHHHHHHHHhcCCCceEEE
Q psy16649 55 EKSFDNIKNWIRNIEENASANVEKML 80 (83)
Q Consensus 55 ~~s~~~~~~w~~~~~~~~~~~~piil 80 (83)
++.|+.+.+|++++++.+....+|++
T Consensus 3 ~~~~~~~~e~i~~L~e~s~~g~vIVV 28 (132)
T PRK04017 3 RENYERFEEIIEELKEFSEAGAPIIV 28 (132)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 46689999999999998866677776
No 395
>PF10995 DUF2819: Protein of unknown function (DUF2819); InterPro: IPR017745 This protein, called BcsE (bacterial cellulose synthase E) or YhjS, is required for cellulose biosynthesis in Salmonella enteritidis. Its role is this process across multiple bacterial species is implied by the partial phylogenetic profiling algorithm []. The protein is encoded in the vicinity of other cellulose biosynthesis genes and has been [] suggested to act as a protease.
Probab=79.38 E-value=12 Score=24.28 Aligned_cols=40 Identities=8% Similarity=0.254 Sum_probs=34.9
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEE
Q psy16649 42 GAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLL 81 (83)
Q Consensus 42 ~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilv 81 (83)
.+.+.-++|++++.+-.+.+-..+..+++..+..+-|+|-
T Consensus 103 ~a~AATvifs~~~~~qi~~LA~~ih~LRr~~G~~LKIvVR 142 (316)
T PF10995_consen 103 TAQAATVIFSCTQNDQIEQLARQIHQLRRQRGSALKIVVR 142 (316)
T ss_pred ccceeEEEEEeCChHHHHHHHHHHHHHHHhcCccceEEEE
Confidence 5788999999999999999999999999999877776653
No 396
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=79.36 E-value=9.2 Score=24.34 Aligned_cols=72 Identities=10% Similarity=0.129 Sum_probs=41.2
Q ss_pred CCcceeeeeeccCccceEEEEEEEeCCCchhhhcchhhhc---cCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCce
Q psy16649 1 SGENLCTLQIFRGCFQHNFHINYRDTAGQERFRTITTAYY---RGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVE 77 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~---~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~p 77 (83)
||||+-+..+..-. ....|=--..-...+....- ...+.+-++.|+.+...+..+...+.++++.. .++.
T Consensus 12 aGKs~Al~~lED~G------y~cvDNlP~~Ll~~l~~~~~~~~~~~~~~Ai~iD~R~~~~~~~~~~~~~~l~~~~-~~~~ 84 (284)
T PF03668_consen 12 AGKSTALRALEDLG------YYCVDNLPPSLLPQLIELLAQSNSKIEKVAIVIDIRSREFFEDLFEALDELRKKG-IDVR 84 (284)
T ss_pred CCHHHHHHHHHhcC------eeEEcCCcHHHHHHHHHHHHhcCCCCceEEEEEeCCChHHHHHHHHHHHHHHhcC-CceE
Confidence 57887777774332 22233211111122222222 34567889999999998888888777776653 3444
Q ss_pred EE
Q psy16649 78 KM 79 (83)
Q Consensus 78 ii 79 (83)
++
T Consensus 85 il 86 (284)
T PF03668_consen 85 IL 86 (284)
T ss_pred EE
Confidence 44
No 397
>KOG3859|consensus
Probab=78.72 E-value=1.1 Score=28.76 Aligned_cols=27 Identities=22% Similarity=0.391 Sum_probs=22.3
Q ss_pred CcceeeeeeccCccc------------------------eEEEEEEEeCCC
Q psy16649 2 GENLCTLQIFRGCFQ------------------------HNFHINYRDTAG 28 (83)
Q Consensus 2 GKss~~~~~~~~~~~------------------------~~~~l~i~Dt~g 28 (83)
|||+|+-.+....|. .+++|.|.||.|
T Consensus 54 GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG 104 (406)
T KOG3859|consen 54 GKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG 104 (406)
T ss_pred cHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence 888888887776665 678999999988
No 398
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=78.71 E-value=8 Score=22.91 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=28.1
Q ss_pred EEEEEEECCChhHHHHHHHHHHHHHHhcC-CCceEEEEe
Q psy16649 45 GIMLVYDITNEKSFDNIKNWIRNIEENAS-ANVEKMLLG 82 (83)
Q Consensus 45 ~~ilv~d~~~~~s~~~~~~w~~~~~~~~~-~~~piilvg 82 (83)
.-++..+.+...+...+.++++.+++..+ +++++++-|
T Consensus 134 ~d~v~lS~~~~~~~~~~~~~i~~lr~~~~~~~~~i~vGG 172 (201)
T cd02070 134 PDILGLSALMTTTMGGMKEVIEALKEAGLRDKVKVMVGG 172 (201)
T ss_pred CCEEEEeccccccHHHHHHHHHHHHHCCCCcCCeEEEEC
Confidence 33555666677778899999999988752 378888766
No 399
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=78.70 E-value=7.4 Score=20.20 Aligned_cols=43 Identities=7% Similarity=0.060 Sum_probs=30.7
Q ss_pred hcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEE
Q psy16649 33 RTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLL 81 (83)
Q Consensus 33 ~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilv 81 (83)
....+.-++.+|.+|++-|..+..+...+++.-+. .++|++.+
T Consensus 39 ~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk------~~ip~~~~ 81 (97)
T PF10087_consen 39 ASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKK------YGIPIIYS 81 (97)
T ss_pred hhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHH------cCCcEEEE
Confidence 33467788999999999999998887766554322 35666654
No 400
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=78.56 E-value=9.3 Score=21.27 Aligned_cols=39 Identities=3% Similarity=0.015 Sum_probs=26.4
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEe
Q psy16649 42 GAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLG 82 (83)
Q Consensus 42 ~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvg 82 (83)
+++++. .+..+..+.+.++...+.+++...+++++++-|
T Consensus 53 ~adii~--iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG 91 (132)
T TIGR00640 53 DVHVVG--VSSLAGGHLTLVPALRKELDKLGRPDILVVVGG 91 (132)
T ss_pred CCCEEE--EcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeC
Confidence 455544 456667788888899988887654466665544
No 401
>PF03599 CdhD: CO dehydrogenase/acetyl-CoA synthase delta subunit; InterPro: IPR016041 This entry represents a conserved region predicted to form a TIM alpha/beta barrel, and is found in the delta subunit of a number of CO dehydrogenase/acetyl-CoA synthase enzymes.; PDB: 2H9A_B 2YCL_B 4DJF_E 4DJD_C 4DJE_C.
Probab=78.54 E-value=8.7 Score=25.52 Aligned_cols=76 Identities=21% Similarity=0.261 Sum_probs=40.8
Q ss_pred CcceeeeeeccCccc-eEEEEEEEeCCCch-------hhhcchhh----hc---cCCcEEEEEEECCCh-hHHHHHHHHH
Q psy16649 2 GENLCTLQIFRGCFQ-HNFHINYRDTAGQE-------RFRTITTA----YY---RGAMGIMLVYDITNE-KSFDNIKNWI 65 (83)
Q Consensus 2 GKss~~~~~~~~~~~-~~~~l~i~Dt~g~~-------~~~~~~~~----~~---~~~~~~ilv~d~~~~-~s~~~~~~w~ 65 (83)
|.|.| +|+...-++ ..+-+.+||+...+ ++..+... +. -++|.+-+....+|+ +.|.++-
T Consensus 15 GEtVL-frhE~tf~Npp~iAieV~D~~~e~~~~~~~~~~~~v~~dwak~rVge~~~~D~Ialr~~S~DPae~fa~~v--- 90 (386)
T PF03599_consen 15 GETVL-FRHEKTFPNPPVIAIEVSDTMPEEEIEAKVERIKDVQFDWAKKRVGEFLGADMIALRLESGDPAEEFAKAV--- 90 (386)
T ss_dssp --SSS-STTCS--SS--EEEEEEESSS-HCHHHHHHHHHTTTCCEHHHHCCCEEEE-SEEEEE-GGGSTHHHHHHHH---
T ss_pred Cccee-ecCCcCCCCCCeEEEEEeCCCChhhHHHHHHHHhhhhhhhhhhhhhhhccccEEEEEecCCChHHHHHHHH---
Confidence 45554 565433333 45899999987643 23322221 22 268889998888887 6665543
Q ss_pred HHHHHhcCCCceEEEEeC
Q psy16649 66 RNIEENASANVEKMLLGN 83 (83)
Q Consensus 66 ~~~~~~~~~~~piilvgN 83 (83)
+.+.+. -++|++|+|.
T Consensus 91 k~V~~a--~~~PLIL~~~ 106 (386)
T PF03599_consen 91 KKVAEA--VDVPLILCGC 106 (386)
T ss_dssp HHHHHC---SSEEEEESS
T ss_pred HHHHHh--cCCCEEEEeC
Confidence 234332 4799999873
No 402
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=78.39 E-value=7.7 Score=23.00 Aligned_cols=39 Identities=18% Similarity=0.168 Sum_probs=28.3
Q ss_pred cEEEEEEECCChhHHHHHHHHHHHHHHhc-CCCceEEEEe
Q psy16649 44 MGIMLVYDITNEKSFDNIKNWIRNIEENA-SANVEKMLLG 82 (83)
Q Consensus 44 ~~~ilv~d~~~~~s~~~~~~w~~~~~~~~-~~~~piilvg 82 (83)
..=+++.+.+...+...++++++.+++.. .+++++++-|
T Consensus 135 ~pd~v~lS~~~~~~~~~~~~~i~~l~~~~~~~~v~i~vGG 174 (197)
T TIGR02370 135 KPLMLTGSALMTTTMYGQKDINDKLKEEGYRDSVKFMVGG 174 (197)
T ss_pred CCCEEEEccccccCHHHHHHHHHHHHHcCCCCCCEEEEEC
Confidence 33455667777777888999999999874 3567777765
No 403
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=78.33 E-value=0.81 Score=30.79 Aligned_cols=13 Identities=8% Similarity=0.143 Sum_probs=10.6
Q ss_pred CCcceeeeeeccC
Q psy16649 1 SGENLCTLQIFRG 13 (83)
Q Consensus 1 ~GKss~~~~~~~~ 13 (83)
+|||+++.||+.-
T Consensus 28 TGKSTFIKRFMel 40 (492)
T PF09547_consen 28 TGKSTFIKRFMEL 40 (492)
T ss_pred cCchhHHHHHHHH
Confidence 6999999998763
No 404
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=77.04 E-value=7.1 Score=23.06 Aligned_cols=57 Identities=12% Similarity=0.255 Sum_probs=31.1
Q ss_pred eCCCchhhhcchhhhccCC--cEEEEEEECC-ChhHH-HHHHHHHHHHHHhcCCCceEEEEe
Q psy16649 25 DTAGQERFRTITTAYYRGA--MGIMLVYDIT-NEKSF-DNIKNWIRNIEENASANVEKMLLG 82 (83)
Q Consensus 25 Dt~g~~~~~~~~~~~~~~~--~~~ilv~d~~-~~~s~-~~~~~w~~~~~~~~~~~~piilvg 82 (83)
..+|.-........++... +.+++-+-++ +++.| +.+...++.+++.. |+.||++|-
T Consensus 40 GfsG~~~le~~~a~~ia~~~a~~~~ld~~~N~~~~~~~~~~~~fv~~iR~~h-P~tPIllv~ 100 (178)
T PF14606_consen 40 GFSGNGKLEPEVADLIAEIDADLIVLDCGPNMSPEEFRERLDGFVKTIREAH-PDTPILLVS 100 (178)
T ss_dssp E-TCCCS--HHHHHHHHHS--SEEEEEESHHCCTTTHHHHHHHHHHHHHTT--SSS-EEEEE
T ss_pred eecCccccCHHHHHHHhcCCCCEEEEEeecCCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEe
Confidence 4566655555555555544 4444444222 33444 44677888887765 799999874
No 405
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=76.88 E-value=11 Score=21.42 Aligned_cols=51 Identities=10% Similarity=0.014 Sum_probs=38.1
Q ss_pred EEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhc
Q psy16649 19 FHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENA 72 (83)
Q Consensus 19 ~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~ 72 (83)
+.+-|.|+++.-... ....+..+|.+|++.+.+. .+...+..+.+.+++..
T Consensus 95 yD~iiiD~~~~~~~~--~~~~l~~ad~viv~~~~~~-~~i~~~~~~~~~l~~~~ 145 (195)
T PF01656_consen 95 YDYIIIDTPPGLSDP--VRNALAAADYVIVPIEPDP-SSIEGAERLIELLKRLG 145 (195)
T ss_dssp SSEEEEEECSSSSHH--HHHHHHTSSEEEEEEESSH-HHHHHHHHHHHHHHHHT
T ss_pred ccceeecccccccHH--HHHHHHhCceeeeecCCcH-HHHHHHHHHHHHHHHhc
Confidence 678899998753322 5566779999999998754 56888888888887654
No 406
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=76.50 E-value=3.3 Score=25.45 Aligned_cols=16 Identities=13% Similarity=0.326 Sum_probs=12.5
Q ss_pred CCcceeeeeeccCccc
Q psy16649 1 SGENLCTLQIFRGCFQ 16 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~ 16 (83)
+|||.+..|+..|-..
T Consensus 39 tGKSvLsqr~~YG~L~ 54 (235)
T COG2874 39 TGKSVLSQRFAYGFLM 54 (235)
T ss_pred ccHHHHHHHHHHHHHh
Confidence 5888888888776655
No 407
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=76.44 E-value=0.97 Score=29.02 Aligned_cols=27 Identities=7% Similarity=0.047 Sum_probs=21.9
Q ss_pred CCcceeeeeeccCccceEEEEEEEeCC
Q psy16649 1 SGENLCTLQIFRGCFQHNFHINYRDTA 27 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~~~~~l~i~Dt~ 27 (83)
|||||+++++..+.-.+.+-+-+-+.+
T Consensus 12 sGKTTlL~~lL~~~~g~kiAVIVNEfG 38 (323)
T COG0523 12 SGKTTLLNHLLANRDGKKIAVIVNEFG 38 (323)
T ss_pred CCHHHHHHHHHhccCCCcEEEEEecCc
Confidence 799999999998887777777776653
No 408
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=76.43 E-value=9.8 Score=21.58 Aligned_cols=39 Identities=8% Similarity=0.066 Sum_probs=25.4
Q ss_pred cCCcEEEEEEECCChhH--------HHHHHHHHHHHHHhcCCCceEEEEe
Q psy16649 41 RGAMGIMLVYDITNEKS--------FDNIKNWIRNIEENASANVEKMLLG 82 (83)
Q Consensus 41 ~~~~~~ilv~d~~~~~s--------~~~~~~w~~~~~~~~~~~~piilvg 82 (83)
.+.|.+++.+-..|... .+++...++.++ .++.++++++
T Consensus 66 ~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~i~~i~---~~~~~vil~~ 112 (185)
T cd01832 66 LRPDLVTLLAGGNDILRPGTDPDTYRADLEEAVRRLR---AAGARVVVFT 112 (185)
T ss_pred cCCCEEEEeccccccccCCCCHHHHHHHHHHHHHHHH---hCCCEEEEec
Confidence 47899999886665532 445666666666 2566777764
No 409
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=76.14 E-value=9.5 Score=23.01 Aligned_cols=39 Identities=8% Similarity=0.074 Sum_probs=28.9
Q ss_pred cEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 44 MGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 44 ~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
++=+++.+.....+...++++++.+++. +.++++++-|+
T Consensus 139 ~~~~V~lS~~~~~~~~~~~~~i~~L~~~-~~~~~i~vGG~ 177 (213)
T cd02069 139 KADIIGLSGLLVPSLDEMVEVAEEMNRR-GIKIPLLIGGA 177 (213)
T ss_pred CCCEEEEccchhccHHHHHHHHHHHHhc-CCCCeEEEECh
Confidence 3334555667778889999999999877 46888887663
No 410
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=75.15 E-value=1.6 Score=28.58 Aligned_cols=13 Identities=23% Similarity=0.401 Sum_probs=10.9
Q ss_pred eEEEEEEEeCCCc
Q psy16649 17 HNFHINYRDTAGQ 29 (83)
Q Consensus 17 ~~~~l~i~Dt~g~ 29 (83)
..+.|.+.||+|-
T Consensus 80 ~~~~l~vIDtpGf 92 (373)
T COG5019 80 FHLNLTVIDTPGF 92 (373)
T ss_pred eEEEEEEeccCCc
Confidence 6788999999984
No 411
>PF09827 CRISPR_Cas2: CRISPR associated protein Cas2; InterPro: IPR019199 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages. ; PDB: 3EXC_X 2I0X_A 3OQ2_B 3UI3_A 1ZPW_X 2I8E_A 2IVY_A.
Probab=75.02 E-value=4.9 Score=19.97 Aligned_cols=20 Identities=20% Similarity=0.473 Sum_probs=13.6
Q ss_pred EEEEEEECCChhHHHHHHHH
Q psy16649 45 GIMLVYDITNEKSFDNIKNW 64 (83)
Q Consensus 45 ~~ilv~d~~~~~s~~~~~~w 64 (83)
-++++||+.+......+.+.
T Consensus 3 ~~lv~YDi~~~k~~~kv~k~ 22 (78)
T PF09827_consen 3 LYLVAYDISDNKRRNKVRKI 22 (78)
T ss_dssp EEEEEEEEHSHHHHHHHHHH
T ss_pred EEEEEEECCCcHHHHHHHHH
Confidence 47889999887655555443
No 412
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=74.95 E-value=7.2 Score=25.20 Aligned_cols=13 Identities=15% Similarity=0.440 Sum_probs=10.7
Q ss_pred CCcceeeeeeccC
Q psy16649 1 SGENLCTLQIFRG 13 (83)
Q Consensus 1 ~GKss~~~~~~~~ 13 (83)
+|||+++..+...
T Consensus 66 tGKT~l~~~v~~~ 78 (394)
T PRK00411 66 TGKTTTVKKVFEE 78 (394)
T ss_pred CCHHHHHHHHHHH
Confidence 6999999988753
No 413
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=74.60 E-value=0.73 Score=30.42 Aligned_cols=32 Identities=19% Similarity=0.231 Sum_probs=24.1
Q ss_pred CCcceeeeeeccCccceEEEEEEEeC-CCchhh
Q psy16649 1 SGENLCTLQIFRGCFQHNFHINYRDT-AGQERF 32 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~~~~~l~i~Dt-~g~~~~ 32 (83)
||||||+.-+.+.--..-.++.|.|. .||..+
T Consensus 84 SGKSTLt~~LaN~~l~rG~~v~iiDaDvGQ~ei 116 (398)
T COG1341 84 SGKSTLTTYLANKLLARGRKVAIIDADVGQSEI 116 (398)
T ss_pred cCHHHHHHHHHHHHhhcCceEEEEeCCCCCccc
Confidence 79999998777665445577889886 577665
No 414
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=74.32 E-value=7.7 Score=25.40 Aligned_cols=30 Identities=13% Similarity=0.256 Sum_probs=23.7
Q ss_pred CChhHHHHHHHHHHHHHHhcCCCceEEEEe
Q psy16649 53 TNEKSFDNIKNWIRNIEENASANVEKMLLG 82 (83)
Q Consensus 53 ~~~~s~~~~~~w~~~~~~~~~~~~piilvg 82 (83)
..++.|+.+..|++++++......||++=|
T Consensus 2 ~~~~~~~~~~~~~~~l~~~~~~~~~ilveg 31 (360)
T PRK14719 2 DKQESLEKLLLIIDDLKLLAEKGIPILVEG 31 (360)
T ss_pred CHHHHHHHHHHHHHHHHHhhhCCCEEEEEc
Confidence 346679999999999999886678887643
No 415
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=73.85 E-value=12 Score=20.33 Aligned_cols=56 Identities=14% Similarity=0.229 Sum_probs=30.7
Q ss_pred EEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 22 NYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 22 ~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
.+-|+-|... .....++|.++++=|+.+.....+.+...+.+++.. ....+++.||
T Consensus 4 ~isD~H~~~~-----~~~~~~~D~vi~~GD~~~~~~~~~~~~~~~~l~~~~-~~~~~~v~GN 59 (135)
T cd07379 4 CISDTHSRHR-----TISIPDGDVLIHAGDLTERGTLEELQKFLDWLKSLP-HPHKIVIAGN 59 (135)
T ss_pred EEeCCCCCCC-----cCcCCCCCEEEECCCCCCCCCHHHHHHHHHHHHhCC-CCeEEEEECC
Confidence 4456665432 122357899999989887654444333333333322 2223567777
No 416
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=73.47 E-value=18 Score=22.13 Aligned_cols=60 Identities=15% Similarity=0.043 Sum_probs=35.3
Q ss_pred eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhc-CCCceE
Q psy16649 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENA-SANVEK 78 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~-~~~~pi 78 (83)
..+.+-|.||.|.-.... ....+..||.+|++... +..++..+....+.+++.. ..++++
T Consensus 116 ~~yD~viIDt~g~~~~~~-~~~~l~~AD~viip~~~-~~~sl~~~~~~~~~i~~~~~~~~l~i 176 (270)
T PRK13185 116 DDYDVILFDVLGDVVCGG-FAAPLQYADYALIVTAN-DFDSIFAANRIAAAIQAKAKNYKVRL 176 (270)
T ss_pred ccCCEEEEecCCCcccCc-ccchhhhCcEEEEEecC-chhhHHHHHHHHHHHHhhhhccCCCc
Confidence 357889999976432111 12235678999988754 5666666666555554321 245553
No 417
>PRK08727 hypothetical protein; Validated
Probab=72.44 E-value=3.2 Score=25.12 Aligned_cols=11 Identities=18% Similarity=0.389 Sum_probs=8.2
Q ss_pred CCcceeeeeec
Q psy16649 1 SGENLCTLQIF 11 (83)
Q Consensus 1 ~GKss~~~~~~ 11 (83)
||||.++.-+.
T Consensus 52 ~GKThL~~a~~ 62 (233)
T PRK08727 52 TGKTHLALALC 62 (233)
T ss_pred CCHHHHHHHHH
Confidence 68888877753
No 418
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=72.36 E-value=12 Score=19.72 Aligned_cols=59 Identities=15% Similarity=0.168 Sum_probs=33.5
Q ss_pred EEEEEEeCCCc-hhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEe
Q psy16649 19 FHINYRDTAGQ-ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLG 82 (83)
Q Consensus 19 ~~l~i~Dt~g~-~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvg 82 (83)
+++.+.|..-. +........ .+.|. +.++.....++..+.+..+.+++.. +++++++-|
T Consensus 29 ~~v~~~d~~~~~~~l~~~~~~--~~pd~--V~iS~~~~~~~~~~~~l~~~~k~~~-p~~~iv~GG 88 (121)
T PF02310_consen 29 HEVDILDANVPPEELVEALRA--ERPDV--VGISVSMTPNLPEAKRLARAIKERN-PNIPIVVGG 88 (121)
T ss_dssp BEEEEEESSB-HHHHHHHHHH--TTCSE--EEEEESSSTHHHHHHHHHHHHHTTC-TTSEEEEEE
T ss_pred CeEEEECCCCCHHHHHHHHhc--CCCcE--EEEEccCcCcHHHHHHHHHHHHhcC-CCCEEEEEC
Confidence 45667776543 222221111 24555 4446655666777777777766554 788888766
No 419
>COG5400 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.18 E-value=5.3 Score=23.54 Aligned_cols=16 Identities=31% Similarity=0.659 Sum_probs=12.3
Q ss_pred CCcEEEEEEECCChhH
Q psy16649 42 GAMGIMLVYDITNEKS 57 (83)
Q Consensus 42 ~~~~~ilv~d~~~~~s 57 (83)
.+.+.++||++.+.+.
T Consensus 131 gsRvmmLvYnL~~v~a 146 (205)
T COG5400 131 GSRVMMLVYNLDDVDA 146 (205)
T ss_pred ceEEEEEEecCCCHHH
Confidence 3467899999987754
No 420
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=70.92 E-value=0.58 Score=27.93 Aligned_cols=28 Identities=14% Similarity=0.198 Sum_probs=24.0
Q ss_pred CCcceeeeeeccCcc-ceEEEEEEEeCCC
Q psy16649 1 SGENLCTLQIFRGCF-QHNFHINYRDTAG 28 (83)
Q Consensus 1 ~GKss~~~~~~~~~~-~~~~~l~i~Dt~g 28 (83)
||||+++..+...-. .....+-++|.-|
T Consensus 34 sGKS~~~~~ll~~l~~~~~~~~ii~D~~G 62 (229)
T PF01935_consen 34 SGKSNTVKVLLEELLKKKGAKVIIFDPHG 62 (229)
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEEcCCC
Confidence 799999998888777 6778899999888
No 421
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=70.90 E-value=5.2 Score=24.88 Aligned_cols=16 Identities=13% Similarity=-0.058 Sum_probs=7.5
Q ss_pred hccCCcEEEEEEECCC
Q psy16649 39 YYRGAMGIMLVYDITN 54 (83)
Q Consensus 39 ~~~~~~~~ilv~d~~~ 54 (83)
.+..+|.+++|.|...
T Consensus 18 ~l~~aDvVl~V~Dar~ 33 (276)
T TIGR03596 18 KLKLVDVVIEVLDARI 33 (276)
T ss_pred HHhhCCEEEEEEeCCC
Confidence 3444455555555443
No 422
>PRK15478 cbiH cobalt-precorrin-3B C(17)-methyltransferase; Provisional
Probab=70.48 E-value=19 Score=22.14 Aligned_cols=44 Identities=9% Similarity=0.018 Sum_probs=29.7
Q ss_pred ccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 40 YRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 40 ~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
..+++..+++|...++.+...+..-.+.+.+..+++.|+.++-|
T Consensus 149 ~~~~~~tlvlym~~~~~~~~~l~~~~~ll~~g~~~~tPvaiv~~ 192 (241)
T PRK15478 149 AGEADFVICFYNPRSRGREGHLARAFDLLAASKSAQTPVGVVKS 192 (241)
T ss_pred HhcCCeEEEEECCcccccHHHHHHHHHHHHccCCCCCEEEEEEe
Confidence 34667788888777666666665544555555567899988754
No 423
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=70.44 E-value=0.93 Score=22.04 Aligned_cols=10 Identities=30% Similarity=0.222 Sum_probs=6.6
Q ss_pred CCcceeeeee
Q psy16649 1 SGENLCTLQI 10 (83)
Q Consensus 1 ~GKss~~~~~ 10 (83)
||||+++--+
T Consensus 34 sGKSTllDAi 43 (62)
T PF13555_consen 34 SGKSTLLDAI 43 (62)
T ss_pred CCHHHHHHHH
Confidence 6888876443
No 424
>KOG1547|consensus
Probab=70.40 E-value=1.9 Score=27.09 Aligned_cols=13 Identities=23% Similarity=0.327 Sum_probs=10.8
Q ss_pred eEEEEEEEeCCCc
Q psy16649 17 HNFHINYRDTAGQ 29 (83)
Q Consensus 17 ~~~~l~i~Dt~g~ 29 (83)
.+.+|.+.||+|-
T Consensus 102 VklkltviDTPGf 114 (336)
T KOG1547|consen 102 VKLKLTVIDTPGF 114 (336)
T ss_pred eEEEEEEecCCCc
Confidence 6678889999984
No 425
>PF12989 DUF3873: Domain of unknown function, B. Theta Gene description (DUF3873); InterPro: IPR024356 This entry represents a family of uncharacterised proteins found primarily in Bacteroides species. The Bacteroides thetaiotaomicron gene appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].
Probab=70.26 E-value=11 Score=18.70 Aligned_cols=46 Identities=15% Similarity=0.301 Sum_probs=27.3
Q ss_pred EEEEeCCCchhhhcchhhh-ccCCcEEEEEEECCChhHHHHHHHHHH
Q psy16649 21 INYRDTAGQERFRTITTAY-YRGAMGIMLVYDITNEKSFDNIKNWIR 66 (83)
Q Consensus 21 l~i~Dt~g~~~~~~~~~~~-~~~~~~~ilv~d~~~~~s~~~~~~w~~ 66 (83)
+.+.-|+|.|+|....... +++.-.+-.=|-.++-+-|.-+..-++
T Consensus 9 ~S~c~~~G~E~Y~~f~~~~~~k~~~~~qYdYr~~~GeLFscV~~tLe 55 (69)
T PF12989_consen 9 VSICQTPGEEKYEKFQLGIGRKGVTKYQYDYRHTDGELFSCVAPTLE 55 (69)
T ss_pred eeecCCCCceeeeeeeeccccccceEEEEeeecCCccchhhhhccHH
Confidence 3456789999997766554 555544445555555565655443333
No 426
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=70.12 E-value=2.4 Score=27.08 Aligned_cols=16 Identities=13% Similarity=0.040 Sum_probs=12.3
Q ss_pred CCcceeeeeeccCccc
Q psy16649 1 SGENLCTLQIFRGCFQ 16 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~ 16 (83)
-|||+++.+|...+..
T Consensus 72 nGKT~Ii~rF~~~hp~ 87 (302)
T PF05621_consen 72 NGKTMIIERFRRLHPP 87 (302)
T ss_pred CcHHHHHHHHHHHCCC
Confidence 3999999999865543
No 427
>PRK06756 flavodoxin; Provisional
Probab=69.92 E-value=14 Score=20.56 Aligned_cols=45 Identities=9% Similarity=0.139 Sum_probs=26.7
Q ss_pred hccCCcEEEEEEECCChhHHH-HHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 39 YYRGAMGIMLVYDITNEKSFD-NIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 39 ~~~~~~~~ilv~d~~~~~s~~-~~~~w~~~~~~~~~~~~piilvgN 83 (83)
.+.+++++++....-....+. .+..+++++......+.|+.++|+
T Consensus 46 ~~~~~d~vi~gspt~~~g~~p~~~~~fl~~l~~~~l~~k~~~~fgt 91 (148)
T PRK06756 46 ILEQYDGIILGAYTWGDGDLPDDFLDFYDAMDSIDLTGKKAAVFGS 91 (148)
T ss_pred HHhcCCeEEEEeCCCCCCCCcHHHHHHHHHHhcCCCCCCEEEEEeC
Confidence 355778888877544333333 366677666543335677777764
No 428
>KOG3022|consensus
Probab=69.87 E-value=9.7 Score=24.35 Aligned_cols=72 Identities=15% Similarity=0.223 Sum_probs=40.2
Q ss_pred cceeeeeeccCccceEEEEEEEeCC-Cc-hhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEE
Q psy16649 3 ENLCTLQIFRGCFQHNFHINYRDTA-GQ-ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKM 79 (83)
Q Consensus 3 Kss~~~~~~~~~~~~~~~l~i~Dt~-g~-~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~pii 79 (83)
|++.+.+|.....-....+-+.||+ |- +.+-++ -.+.+.++++++|--. ..-++..+++-+...+ ...+|++
T Consensus 141 k~~~I~qflk~vdwg~lDyLviDtPPGtsDehls~-~~~~~~~~gAviVTTP-Q~vAl~Dv~K~i~fc~---K~~I~il 214 (300)
T KOG3022|consen 141 KNSMIKQFLKDVDWGELDYLVIDTPPGTSDEHLSL-VQFLRESDGAVIVTTP-QEVALQDVRKEIDFCR---KAGIPIL 214 (300)
T ss_pred HHHHHHHHHhcCCCCCcCEEEEeCCCCCChhhhhe-eecccccCceEEEeCc-hhhhhHHHHhhhhhhh---hcCCceE
Confidence 5566677776665577888899995 43 333333 3345555887776322 2334555555433332 2456665
No 429
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=69.45 E-value=31 Score=23.08 Aligned_cols=74 Identities=12% Similarity=0.034 Sum_probs=42.6
Q ss_pred eeeeccCccc-eEEEEEEEeC-CCc------hhhhcch-------hh--hccCCcEEEEEEECCChhHHHH----HHHHH
Q psy16649 7 TLQIFRGCFQ-HNFHINYRDT-AGQ------ERFRTIT-------TA--YYRGAMGIMLVYDITNEKSFDN----IKNWI 65 (83)
Q Consensus 7 ~~~~~~~~~~-~~~~l~i~Dt-~g~------~~~~~~~-------~~--~~~~~~~~ilv~d~~~~~s~~~----~~~w~ 65 (83)
.+||....++ -.+-+.|||+ ... ++|.... .. -.-++|.+.+....++++-.+. ..+-.
T Consensus 101 fyrhE~~~~npp~ia~dV~D~~~~~~~~~i~~~~~dV~~dP~~wak~~V~~~~aD~Ialr~~S~DP~~~d~~~~e~a~~v 180 (389)
T TIGR00381 101 LYRFEEPQPNPPVVTFDVFDIPMPGLPKPIRMHFEDVMEDPAEWARKCVKEFGADMVTIHLISTDPKLDDKSPSEAAKVL 180 (389)
T ss_pred ceecCcCCCCCCeEEEEEecCCccccHHHHHHHHHHHhcCHHHHHHHHHHHhCCCEEEEEecCCCccccccCHHHHHHHH
Confidence 4455443333 5589999998 322 2333322 11 1247999999999999883332 22233
Q ss_pred HHHHHhcCCCceEEEEe
Q psy16649 66 RNIEENASANVEKMLLG 82 (83)
Q Consensus 66 ~~~~~~~~~~~piilvg 82 (83)
+.+.+. .++|++|.|
T Consensus 181 k~V~~a--v~vPLIL~g 195 (389)
T TIGR00381 181 EDVLQA--VDVPIVIGG 195 (389)
T ss_pred HHHHHh--CCCCEEEeC
Confidence 333322 589999875
No 430
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=69.03 E-value=0.83 Score=29.16 Aligned_cols=26 Identities=8% Similarity=0.047 Sum_probs=17.6
Q ss_pred CCcceeeeeeccCccceEEEEEEEeC
Q psy16649 1 SGENLCTLQIFRGCFQHNFHINYRDT 26 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~~~~~l~i~Dt 26 (83)
|||||++.++........+-+-+-|.
T Consensus 15 aGKTTll~~ll~~~~~~riaVi~NEf 40 (318)
T PRK11537 15 AGKTTLLRHILNEQHGYKIAVIENEF 40 (318)
T ss_pred CCHHHHHHHHHhcccCCcccccccCc
Confidence 79999999998654344444444454
No 431
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=68.98 E-value=0.62 Score=24.76 Aligned_cols=13 Identities=15% Similarity=0.212 Sum_probs=11.2
Q ss_pred CCcceeeeeeccC
Q psy16649 1 SGENLCTLQIFRG 13 (83)
Q Consensus 1 ~GKss~~~~~~~~ 13 (83)
|||||+..++...
T Consensus 10 sGKST~a~~La~~ 22 (121)
T PF13207_consen 10 SGKSTLAKELAER 22 (121)
T ss_dssp SSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 7999999998765
No 432
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=68.87 E-value=8.5 Score=23.81 Aligned_cols=15 Identities=13% Similarity=0.071 Sum_probs=11.6
Q ss_pred CCcceeeeeeccCcc
Q psy16649 1 SGENLCTLQIFRGCF 15 (83)
Q Consensus 1 ~GKss~~~~~~~~~~ 15 (83)
+|||+++..+.....
T Consensus 27 ~GKTTLlr~I~n~l~ 41 (249)
T cd01128 27 AGKTTLLQSIANAIT 41 (249)
T ss_pred CCHHHHHHHHHhccc
Confidence 799999988766543
No 433
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=68.73 E-value=22 Score=21.21 Aligned_cols=41 Identities=12% Similarity=0.103 Sum_probs=28.7
Q ss_pred EEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHH
Q psy16649 20 HINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKN 63 (83)
Q Consensus 20 ~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~ 63 (83)
.+-|.|+++. ........+..+|.++++...+ ..++..+..
T Consensus 116 D~viiD~pp~--~~~~~~~~l~~ad~vii~~~~~-~~s~~~~~~ 156 (246)
T TIGR03371 116 DWVLIDVPRG--PSPITRQALAAADLVLVVVNAD-AACYATLHQ 156 (246)
T ss_pred CEEEEECCCC--chHHHHHHHHhCCeEEEEeCCC-HHHHHHHHH
Confidence 6888999984 2344556678899999988764 556666653
No 434
>CHL00175 minD septum-site determining protein; Validated
Probab=68.25 E-value=26 Score=21.66 Aligned_cols=51 Identities=10% Similarity=-0.021 Sum_probs=33.2
Q ss_pred EEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHh
Q psy16649 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEN 71 (83)
Q Consensus 18 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~ 71 (83)
.+.+.|.|+++.-. ......+..+|.+++|.+. +..+...+...++.+.+.
T Consensus 126 ~yD~VIiDtpp~~~--~~~~~~l~~aD~viiV~~p-~~~si~~~~~~~~~l~~~ 176 (281)
T CHL00175 126 GYDYILIDCPAGID--VGFINAIAPAQEAIVVTTP-EITAIRDADRVAGLLEAN 176 (281)
T ss_pred CCCEEEEeCCCCCC--HHHHHHHHhcCeeEEEcCC-ChHHHHHHHHHHHHHHHc
Confidence 57889999987532 2233445678888888764 456666666666666553
No 435
>PRK08084 DNA replication initiation factor; Provisional
Probab=68.24 E-value=3.6 Score=24.96 Aligned_cols=12 Identities=8% Similarity=0.002 Sum_probs=8.8
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
||||.++..+..
T Consensus 56 ~GKThLl~a~~~ 67 (235)
T PRK08084 56 AGRSHLLHAACA 67 (235)
T ss_pred CCHHHHHHHHHH
Confidence 689988876543
No 436
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=68.05 E-value=25 Score=21.42 Aligned_cols=62 Identities=13% Similarity=0.197 Sum_probs=37.0
Q ss_pred eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHH---hcCCCceEEEE
Q psy16649 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE---NASANVEKMLL 81 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~---~~~~~~piilv 81 (83)
..+.+.|.|++|... .....-+..+|.+|+.... ++.++..+...++.+.+ ...+++|..++
T Consensus 82 ~~yD~iiID~pp~~~--~~~~~al~~aD~vliP~~p-s~~d~~~~~~~~~~v~~~~~~~~~~l~~~iv 146 (231)
T PRK13849 82 QGFDYALADTHGGSS--ELNNTIIASSNLLLIPTML-TPLDIDEALSTYRYVIELLLSENLAIPTAIL 146 (231)
T ss_pred CCCCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccC-cHHHHHHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence 357889999999653 3344556788988877655 45555555555444433 22345554444
No 437
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=67.92 E-value=4.8 Score=23.13 Aligned_cols=13 Identities=23% Similarity=0.370 Sum_probs=10.2
Q ss_pred CCcceeeeeeccC
Q psy16649 1 SGENLCTLQIFRG 13 (83)
Q Consensus 1 ~GKss~~~~~~~~ 13 (83)
+|||++++-+..+
T Consensus 36 AGKTtf~rgi~~~ 48 (149)
T COG0802 36 AGKTTLVRGIAKG 48 (149)
T ss_pred CChHHHHHHHHHH
Confidence 6999998877654
No 438
>PLN03025 replication factor C subunit; Provisional
Probab=67.89 E-value=13 Score=23.54 Aligned_cols=34 Identities=18% Similarity=0.296 Sum_probs=17.9
Q ss_pred CCcceeeeeeccCccc-----eEEEEEEEeCCCchhhhc
Q psy16649 1 SGENLCTLQIFRGCFQ-----HNFHINYRDTAGQERFRT 34 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-----~~~~l~i~Dt~g~~~~~~ 34 (83)
+|||++...+...-+. .-+.+.--|..|.+..+.
T Consensus 45 ~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~~vr~ 83 (319)
T PLN03025 45 TGKTTSILALAHELLGPNYKEAVLELNASDDRGIDVVRN 83 (319)
T ss_pred CCHHHHHHHHHHHHhcccCccceeeecccccccHHHHHH
Confidence 6999988876543221 123333345555544443
No 439
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=67.69 E-value=20 Score=20.15 Aligned_cols=48 Identities=13% Similarity=-0.082 Sum_probs=31.7
Q ss_pred EEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHH
Q psy16649 20 HINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE 70 (83)
Q Consensus 20 ~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~ 70 (83)
.+.|.|+++.... .....+..+|.++++.+.+ ..++..+..+++.+++
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~~~~ 111 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPE-ISSLRDADRVKGLLEA 111 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCC-cchHHHHHHHHHHHHH
Confidence 5788999875332 2334467889999887654 4566666666666654
No 440
>PF12098 DUF3574: Protein of unknown function (DUF3574); InterPro: IPR021957 This family of proteins is functionally uncharacterised. This protein is found in bacteria and viruses. Proteins in this family are typically between 144 to 163 amino acids in length. This protein has a conserved TPRF sequence motif.
Probab=67.12 E-value=18 Score=19.50 Aligned_cols=49 Identities=14% Similarity=0.062 Sum_probs=27.7
Q ss_pred EEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHH
Q psy16649 21 INYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE 70 (83)
Q Consensus 21 l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~ 70 (83)
|.+||..||-+-+.--...-..+-.+++++.- ++++-..+....+..++
T Consensus 38 lTv~Da~GqW~~~~~g~~~rE~Skvv~i~~~~-~~~~~~~i~~Ir~~Yk~ 86 (104)
T PF12098_consen 38 LTVLDAYGQWRDRATGRLIRERSKVVIIVHPD-TPAAEARIEAIREAYKQ 86 (104)
T ss_pred ceEEeccceEecCCCCcEeecccEEEEEEeCC-ChHHHHHHHHHHHHHHH
Confidence 67899999865533333334456666777643 44454555444444433
No 441
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=66.76 E-value=1.3 Score=31.57 Aligned_cols=51 Identities=22% Similarity=0.307 Sum_probs=27.4
Q ss_pred CCcceeeeeeccCccceEEEEEEEeCCCc-hhhhcchhhhccC---CcEEEEEEECCChhH
Q psy16649 1 SGENLCTLQIFRGCFQHNFHINYRDTAGQ-ERFRTITTAYYRG---AMGIMLVYDITNEKS 57 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~~~~~l~i~Dt~g~-~~~~~~~~~~~~~---~~~~ilv~d~~~~~s 57 (83)
||||+|++.+..-.| .+.|..|. ..-...|-..... ....++|.|+.-.++
T Consensus 6 sgkstlln~lf~t~f------~~m~~~~r~qtt~gi~~~~~~~~~~~~~~~~v~d~eg~d~ 60 (742)
T PF05879_consen 6 SGKSTLLNHLFGTQF------DVMDESGRQQTTKGIWMAKAKEVESSESNILVLDVEGTDG 60 (742)
T ss_pred CcHHHHHHHHHCCCc------cccccccccccchhhHHHhccccccCCCceEEEeCCCCCc
Confidence 799999999976653 34444331 1122233333333 234567778754333
No 442
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=66.73 E-value=7.7 Score=23.24 Aligned_cols=43 Identities=14% Similarity=0.189 Sum_probs=28.9
Q ss_pred cCCcEEEEEEECCChhHHHHHHHHHHHHHHhc-----CCCceE-EEEeC
Q psy16649 41 RGAMGIMLVYDITNEKSFDNIKNWIRNIEENA-----SANVEK-MLLGN 83 (83)
Q Consensus 41 ~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~-----~~~~pi-ilvgN 83 (83)
-+.|+++++=|+.|.......++|.+++++.. +++.|+ .|.||
T Consensus 41 l~PD~Vi~lGDL~D~G~~~~~~e~~e~l~Rf~~If~~~~~~~~~~VpGN 89 (195)
T cd08166 41 VQPDIVIFLGDLMDEGSIANDDEYYSYVQRFINIFEVPNGTKIIYLPGD 89 (195)
T ss_pred cCCCEEEEeccccCCCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEECCC
Confidence 36899999999999877655666766665532 234554 45565
No 443
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=66.50 E-value=5.1 Score=24.71 Aligned_cols=13 Identities=23% Similarity=0.227 Sum_probs=10.8
Q ss_pred CCcceeeeeeccC
Q psy16649 1 SGENLCTLQIFRG 13 (83)
Q Consensus 1 ~GKss~~~~~~~~ 13 (83)
||||++..+|..+
T Consensus 47 tGKT~l~~qf~~~ 59 (259)
T TIGR03878 47 TGKSLMVEQFAVT 59 (259)
T ss_pred CCHHHHHHHHHHH
Confidence 7999999998664
No 444
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=66.42 E-value=1.3 Score=28.91 Aligned_cols=38 Identities=18% Similarity=0.263 Sum_probs=24.6
Q ss_pred CCcceeeeeeccCccceEEEEEEEeCCCchhhhcchhhhccCC
Q psy16649 1 SGENLCTLQIFRGCFQHNFHINYRDTAGQERFRTITTAYYRGA 43 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~ 43 (83)
||||..+..+........-..-|+|..|. ....||+..
T Consensus 26 sGKT~~i~~ll~~~~~~g~~~iI~D~kg~-----~~~~f~~~~ 63 (386)
T PF10412_consen 26 SGKTQAIRHLLDQIRARGDRAIIYDPKGE-----FTERFYRPG 63 (386)
T ss_dssp SSHHHHHHHHHHHHHHTT-EEEEEEETTH-----HHHHH--TT
T ss_pred CCHHHHHHHHHHHHHHcCCEEEEEECCch-----HHHHhcCCC
Confidence 79999888776654445567889998874 245566655
No 445
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=66.34 E-value=18 Score=19.29 Aligned_cols=23 Identities=17% Similarity=0.443 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 60 NIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 60 ~~~~w~~~~~~~~~~~~piilvgN 83 (83)
....+++.+.+.. +.+|++++|.
T Consensus 55 ~~~~~l~~l~~~~-~~~Pvlllg~ 77 (109)
T PF06490_consen 55 KLAELLKELLKWA-PHIPVLLLGE 77 (109)
T ss_pred hHHHHHHHHHhhC-CCCCEEEECC
Confidence 4455666666555 7899999874
No 446
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=66.24 E-value=1.8 Score=27.98 Aligned_cols=27 Identities=4% Similarity=0.132 Sum_probs=18.1
Q ss_pred CCcceeeeeeccCccceEEEEEEEeCC
Q psy16649 1 SGENLCTLQIFRGCFQHNFHINYRDTA 27 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~~~~~l~i~Dt~ 27 (83)
|||||++.++........+-+-.-|.+
T Consensus 15 aGKTTll~~ll~~~~~~~iavi~Ne~G 41 (341)
T TIGR02475 15 AGKTTLIRHLLQNAAGRRIAVIVNEFG 41 (341)
T ss_pred CCHHHHHHHHHhccCCCcEEEEECCCc
Confidence 799999999886544444555554433
No 447
>COG4639 Predicted kinase [General function prediction only]
Probab=66.01 E-value=7.5 Score=22.76 Aligned_cols=12 Identities=25% Similarity=0.307 Sum_probs=8.3
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
||||+++.+-..
T Consensus 13 sGKsT~ak~n~~ 24 (168)
T COG4639 13 SGKSTFAKENFL 24 (168)
T ss_pred CchhHHHHHhCC
Confidence 688888877433
No 448
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=65.94 E-value=26 Score=22.26 Aligned_cols=28 Identities=25% Similarity=0.162 Sum_probs=18.9
Q ss_pred CCcceeeeeeccCccc------eEEEEEEEeCCC
Q psy16649 1 SGENLCTLQIFRGCFQ------HNFHINYRDTAG 28 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~------~~~~l~i~Dt~g 28 (83)
||||.+..++..+.-. ...+.-..|+.+
T Consensus 113 sGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 113 SGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred CCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 7999999998754211 123666778877
No 449
>PRK13660 hypothetical protein; Provisional
Probab=65.36 E-value=26 Score=20.78 Aligned_cols=21 Identities=38% Similarity=0.450 Sum_probs=15.6
Q ss_pred hhhccCCcEEEEEEECCChhH
Q psy16649 37 TAYYRGAMGIMLVYDITNEKS 57 (83)
Q Consensus 37 ~~~~~~~~~~ilv~d~~~~~s 57 (83)
.....+++++|++||-..+.+
T Consensus 124 ~fmv~~sd~~i~~YD~e~~Gg 144 (182)
T PRK13660 124 QFMLEHTDGALLVYDEENEGS 144 (182)
T ss_pred HHHHHccCeEEEEEcCCCCCC
Confidence 344568999999999876543
No 450
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=65.17 E-value=33 Score=21.77 Aligned_cols=53 Identities=6% Similarity=-0.005 Sum_probs=38.7
Q ss_pred eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhc
Q psy16649 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENA 72 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~ 72 (83)
..+.+.|.|+++... ......+..+|.++++.+. +..++..+.++++.+....
T Consensus 203 ~~~D~VIID~p~~~~--~~~~~~L~~AD~vliV~~~-~~~sl~~a~r~l~~l~~~~ 255 (322)
T TIGR03815 203 RGGDLVVVDLPRRLT--PAAETALESADLVLVVVPA-DVRAVAAAARVCPELGRRN 255 (322)
T ss_pred hcCCEEEEeCCCCCC--HHHHHHHHHCCEEEEEcCC-cHHHHHHHHHHHHHHhhhC
Confidence 557889999997542 3345667899999998864 4667788888877776643
No 451
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=64.80 E-value=0.85 Score=24.23 Aligned_cols=13 Identities=15% Similarity=0.212 Sum_probs=10.1
Q ss_pred CCcceeeeeeccC
Q psy16649 1 SGENLCTLQIFRG 13 (83)
Q Consensus 1 ~GKss~~~~~~~~ 13 (83)
|||||++..+...
T Consensus 9 sGKtTia~~L~~~ 21 (129)
T PF13238_consen 9 SGKTTIAKELAER 21 (129)
T ss_dssp SSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 6888888887655
No 452
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=64.77 E-value=0.71 Score=26.10 Aligned_cols=13 Identities=8% Similarity=0.061 Sum_probs=8.2
Q ss_pred CCcceeeeeeccC
Q psy16649 1 SGENLCTLQIFRG 13 (83)
Q Consensus 1 ~GKss~~~~~~~~ 13 (83)
|||||++..+...
T Consensus 10 tGKTTL~~~L~~~ 22 (163)
T PF13521_consen 10 TGKTTLIEALAAR 22 (163)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHc
Confidence 5777777666544
No 453
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=64.55 E-value=30 Score=23.59 Aligned_cols=46 Identities=22% Similarity=0.234 Sum_probs=29.9
Q ss_pred hhccCCcEEEEEEECCChh---HHHH-------HHHHHHHHHHhcCCCceEEEEe-C
Q psy16649 38 AYYRGAMGIMLVYDITNEK---SFDN-------IKNWIRNIEENASANVEKMLLG-N 83 (83)
Q Consensus 38 ~~~~~~~~~ilv~d~~~~~---s~~~-------~~~w~~~~~~~~~~~~piilvg-N 83 (83)
.-++++|.+|++-...... ..+- .+...+.+.++.+++..++||| |
T Consensus 195 ea~~daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tN 251 (452)
T cd05295 195 VAFKDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRT 251 (452)
T ss_pred HHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCC
Confidence 4567899999998775432 2222 2345666666666678888888 5
No 454
>KOG3220|consensus
Probab=64.16 E-value=0.96 Score=27.46 Aligned_cols=35 Identities=20% Similarity=0.311 Sum_probs=23.5
Q ss_pred CCcceeeeeeccCccceEEEEEEEeC---------CCchhhhcchhhhcc
Q psy16649 1 SGENLCTLQIFRGCFQHNFHINYRDT---------AGQERFRTITTAYYR 41 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~~~~~l~i~Dt---------~g~~~~~~~~~~~~~ 41 (83)
|||||.+..|.. ..+-+.|. +|++.|+.+...|-.
T Consensus 12 tGKStVs~~f~~------~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~ 55 (225)
T KOG3220|consen 12 TGKSTVSQVFKA------LGIPVIDADVVAREVVEPGTPAYRRIVEAFGT 55 (225)
T ss_pred cChHHHHHHHHH------cCCcEecHHHHHHHHhcCCChHHHHHHHHhCc
Confidence 799999999953 34445564 577777776655443
No 455
>PF12846 AAA_10: AAA-like domain
Probab=64.10 E-value=0.93 Score=27.70 Aligned_cols=29 Identities=14% Similarity=0.196 Sum_probs=23.1
Q ss_pred CCcceeeeeeccCccceEEEEEEEeCCCc
Q psy16649 1 SGENLCTLQIFRGCFQHNFHINYRDTAGQ 29 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~~~~~l~i~Dt~g~ 29 (83)
||||+++..+..........+-++|..|.
T Consensus 12 sGKT~~~~~l~~~~~~~g~~~~i~D~~g~ 40 (304)
T PF12846_consen 12 SGKTTLLKNLLEQLIRRGPRVVIFDPKGD 40 (304)
T ss_pred CcHHHHHHHHHHHHHHcCCCEEEEcCCch
Confidence 79999999887766667778888898753
No 456
>PRK10818 cell division inhibitor MinD; Provisional
Probab=64.01 E-value=31 Score=21.10 Aligned_cols=49 Identities=8% Similarity=-0.021 Sum_probs=33.6
Q ss_pred EEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHH
Q psy16649 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIE 69 (83)
Q Consensus 18 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~ 69 (83)
.+.+.|.|+++.-... ...-+..+|.++++.+.+ ..++..+....+.+.
T Consensus 113 ~yd~viiD~p~~~~~~--~~~~l~~ad~vivv~~p~-~~sl~~~~~~l~~i~ 161 (270)
T PRK10818 113 DFEFIVCDSPAGIETG--ALMALYFADEAIITTNPE-VSSVRDSDRILGILA 161 (270)
T ss_pred CCCEEEEeCCCCccHH--HHHHHHhCCeEEEEcCCC-chHHHhHHHHHHHHH
Confidence 5788999997654332 233467899999997654 566777776666654
No 457
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=63.72 E-value=29 Score=22.36 Aligned_cols=46 Identities=20% Similarity=0.211 Sum_probs=29.8
Q ss_pred hhccCCcEEEEEEECCChh--H-HHH-------HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 38 AYYRGAMGIMLVYDITNEK--S-FDN-------IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 38 ~~~~~~~~~ilv~d~~~~~--s-~~~-------~~~w~~~~~~~~~~~~piilvgN 83 (83)
.-++++|.+|+........ + .+. ++...+.+.++.+++..+++++|
T Consensus 74 ~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsN 129 (322)
T cd01338 74 VAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGN 129 (322)
T ss_pred HHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecC
Confidence 4567899999988774432 1 221 34566666666645777888877
No 458
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=63.54 E-value=1.1 Score=24.51 Aligned_cols=12 Identities=17% Similarity=0.315 Sum_probs=10.2
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
||||++..++..
T Consensus 10 sGKSt~a~~l~~ 21 (143)
T PF13671_consen 10 SGKSTLAKRLAK 21 (143)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 799999999873
No 459
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=63.51 E-value=27 Score=23.28 Aligned_cols=46 Identities=17% Similarity=0.193 Sum_probs=30.2
Q ss_pred hhccCCcEEEEEEECCCh---hHHHH-------HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 38 AYYRGAMGIMLVYDITNE---KSFDN-------IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 38 ~~~~~~~~~ilv~d~~~~---~s~~~-------~~~w~~~~~~~~~~~~piilvgN 83 (83)
.-++++|.+|+....... +..+. ++++.+.+.++.+++..+++|+|
T Consensus 116 ~~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsN 171 (387)
T TIGR01757 116 EVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGN 171 (387)
T ss_pred HHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Confidence 456688999988766432 22222 34566667766667888888887
No 460
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=63.41 E-value=30 Score=20.77 Aligned_cols=52 Identities=12% Similarity=-0.019 Sum_probs=34.8
Q ss_pred eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHh
Q psy16649 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEN 71 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~ 71 (83)
+.+.+-|.|+++.-.. .....+..+|.++++... +..++..+...++.+.+.
T Consensus 110 ~~~D~viiD~p~~~~~--~~~~~l~~aD~viiv~~~-~~~s~~~~~~~~~~l~~~ 161 (261)
T TIGR01968 110 EEFDYVIIDCPAGIES--GFRNAVAPADEAIVVTTP-EVSAVRDADRVIGLLEAK 161 (261)
T ss_pred HhCCEEEEeCCCCcCH--HHHHHHHhCCeEEEEcCC-CcHHHHHHHHHHHHHHHc
Confidence 4577889999875322 223446688998888765 466677777766666554
No 461
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=63.18 E-value=0.97 Score=25.34 Aligned_cols=13 Identities=15% Similarity=0.250 Sum_probs=10.7
Q ss_pred CCcceeeeeeccC
Q psy16649 1 SGENLCTLQIFRG 13 (83)
Q Consensus 1 ~GKss~~~~~~~~ 13 (83)
||||+++..+...
T Consensus 11 sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 11 SGKTTLIRKLINE 23 (140)
T ss_dssp SSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 7999999887654
No 462
>KOG1487|consensus
Probab=63.04 E-value=8.9 Score=24.56 Aligned_cols=61 Identities=18% Similarity=0.110 Sum_probs=38.8
Q ss_pred CCcceeeeeeccCccc------------------eEEEEEEEeCCCchhhh-------cchhhhccCCcEEEEEEECCCh
Q psy16649 1 SGENLCTLQIFRGCFQ------------------HNFHINYRDTAGQERFR-------TITTAYYRGAMGIMLVYDITNE 55 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~------------------~~~~l~i~Dt~g~~~~~-------~~~~~~~~~~~~~ilv~d~~~~ 55 (83)
+|||+++..+....-+ +--++++.|.+|--.-. ...-.--+.|+.+++|.|+..+
T Consensus 70 vGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcnli~~vld~~kp 149 (358)
T KOG1487|consen 70 VGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCNLIFIVLDVLKP 149 (358)
T ss_pred cchhhhhhhhcCCCCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeecccEEEEEeeccCc
Confidence 5888888776543222 44588999988742211 1112234578899999999988
Q ss_pred hHHHHH
Q psy16649 56 KSFDNI 61 (83)
Q Consensus 56 ~s~~~~ 61 (83)
-+-..+
T Consensus 150 ~~hk~~ 155 (358)
T KOG1487|consen 150 LSHKKI 155 (358)
T ss_pred ccHHHH
Confidence 775543
No 463
>PRK01889 GTPase RsgA; Reviewed
Probab=62.72 E-value=25 Score=22.91 Aligned_cols=41 Identities=10% Similarity=0.208 Sum_probs=25.4
Q ss_pred ccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 40 YRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 40 ~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
..++|.+++|.++...-....+++++..+... ++|.+||-|
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~---~i~piIVLN 150 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWES---GAEPVIVLT 150 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHc---CCCEEEEEE
Confidence 35788899999997555555666666555432 334455543
No 464
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=62.63 E-value=1.7 Score=27.15 Aligned_cols=30 Identities=13% Similarity=0.055 Sum_probs=19.9
Q ss_pred CCcceeeeeeccCccc------eEEEEEEEeCCCch
Q psy16649 1 SGENLCTLQIFRGCFQ------HNFHINYRDTAGQE 30 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~------~~~~l~i~Dt~g~~ 30 (83)
||||+++.++...--. ..+.+.-|...+.+
T Consensus 31 sGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~ 66 (325)
T PF07693_consen 31 SGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGED 66 (325)
T ss_pred CCHHHHHHHHHHHHhcccccceeeEEEccccCCCcc
Confidence 7999999886543322 35666677777643
No 465
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=62.45 E-value=9.7 Score=16.44 Aligned_cols=14 Identities=57% Similarity=1.227 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHHH
Q psy16649 56 KSFDNIKNWIRNIE 69 (83)
Q Consensus 56 ~s~~~~~~w~~~~~ 69 (83)
.-|+++++|+..+.
T Consensus 11 ryfddiqkwirnit 24 (40)
T PF13124_consen 11 RYFDDIQKWIRNIT 24 (40)
T ss_pred HHHHHHHHHHHHHH
Confidence 45888999987764
No 466
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=62.43 E-value=18 Score=19.70 Aligned_cols=26 Identities=12% Similarity=0.265 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHHHHHhcCCCceEEE
Q psy16649 55 EKSFDNIKNWIRNIEENASANVEKML 80 (83)
Q Consensus 55 ~~s~~~~~~w~~~~~~~~~~~~piil 80 (83)
+.||++=..-...+++.-++.+|+|+
T Consensus 4 ~~s~e~R~~e~~~ir~kyp~~iPVIv 29 (112)
T cd01611 4 RHPFEKRKAEVERIRAKYPDRIPVIV 29 (112)
T ss_pred ccCHHHHHHHHHHHHHHCCCceEEEE
Confidence 45666666666667777778899886
No 467
>PF09005 DUF1897: Domain of unknown function (DUF1897); InterPro: IPR015096 This domain is found in Psi proteins produced by Drosophila, and in various eukaryotic hypothetical proteins. It has no known function. ; PDB: 2BN6_A 2BN5_A.
Probab=62.26 E-value=3.3 Score=18.13 Aligned_cols=16 Identities=31% Similarity=0.605 Sum_probs=9.1
Q ss_pred CCchhhhcchhhhccC
Q psy16649 27 AGQERFRTITTAYYRG 42 (83)
Q Consensus 27 ~g~~~~~~~~~~~~~~ 42 (83)
+|+.+|..-|..||++
T Consensus 6 ~gq~DYSaqW~eYYr~ 21 (38)
T PF09005_consen 6 GGQPDYSAQWAEYYRQ 21 (38)
T ss_dssp ------CCHHHHHHCC
T ss_pred CCCCCHHHHHHHHHHH
Confidence 5788999999999987
No 468
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=62.18 E-value=29 Score=20.94 Aligned_cols=41 Identities=17% Similarity=0.131 Sum_probs=23.9
Q ss_pred cCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 41 RGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 41 ~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
.++|.+++.=|+++....++....++.++.. +...+++.||
T Consensus 40 ~~~D~viiaGDl~~~~~~~~~~~~l~~l~~l--~~~v~~V~GN 80 (232)
T cd07393 40 APEDIVLIPGDISWAMKLEEAKLDLAWIDAL--PGTKVLLKGN 80 (232)
T ss_pred CCCCEEEEcCCCccCCChHHHHHHHHHHHhC--CCCeEEEeCC
Confidence 3789999999998754444333333333322 2234667777
No 469
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=62.12 E-value=22 Score=19.20 Aligned_cols=44 Identities=11% Similarity=0.219 Sum_probs=24.2
Q ss_pred hccCCcEEEEEEECCChhHH--HHHHHHHHHHHHhcCCCceEEEEe
Q psy16649 39 YYRGAMGIMLVYDITNEKSF--DNIKNWIRNIEENASANVEKMLLG 82 (83)
Q Consensus 39 ~~~~~~~~ilv~d~~~~~s~--~~~~~w~~~~~~~~~~~~piilvg 82 (83)
.+..+|.+++.......... ..+..|++.+......+.++.++|
T Consensus 42 ~l~~~d~iilgspty~~g~~p~~~~~~f~~~l~~~~~~gk~~~vfg 87 (140)
T TIGR01753 42 DLLSYDAVLLGCSTWGDEDLEQDDFEPFFEELEDIDLGGKKVALFG 87 (140)
T ss_pred HHhcCCEEEEEcCCCCCCCCCcchHHHHHHHhhhCCCCCCEEEEEe
Confidence 34557888877655443222 455666666654322455566555
No 470
>PRK06893 DNA replication initiation factor; Validated
Probab=61.63 E-value=4.4 Score=24.47 Aligned_cols=12 Identities=17% Similarity=0.127 Sum_probs=8.8
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
||||.++.-...
T Consensus 50 ~GKThL~~ai~~ 61 (229)
T PRK06893 50 SGKSHLLKAVSN 61 (229)
T ss_pred CCHHHHHHHHHH
Confidence 688888877653
No 471
>PHA02763 hypothetical protein; Provisional
Probab=61.48 E-value=12 Score=19.53 Aligned_cols=17 Identities=18% Similarity=0.659 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHhc
Q psy16649 56 KSFDNIKNWIRNIEENA 72 (83)
Q Consensus 56 ~s~~~~~~w~~~~~~~~ 72 (83)
..|+++++|+.+.++..
T Consensus 65 SGFe~VEeWl~eArrLh 81 (102)
T PHA02763 65 SGFENVEEWLNEARRLH 81 (102)
T ss_pred cchhhHHHHHHHHHHHh
Confidence 55899999999998854
No 472
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=61.44 E-value=18 Score=22.47 Aligned_cols=13 Identities=23% Similarity=0.457 Sum_probs=10.2
Q ss_pred CCcceeeeeeccC
Q psy16649 1 SGENLCTLQIFRG 13 (83)
Q Consensus 1 ~GKss~~~~~~~~ 13 (83)
+|||+++..+...
T Consensus 49 ~GKt~~~~~l~~~ 61 (319)
T PRK00440 49 TGKTTAALALARE 61 (319)
T ss_pred CCHHHHHHHHHHH
Confidence 6999998887654
No 473
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=61.30 E-value=33 Score=21.82 Aligned_cols=14 Identities=14% Similarity=0.271 Sum_probs=11.4
Q ss_pred CCcceeeeeeccCc
Q psy16649 1 SGENLCTLQIFRGC 14 (83)
Q Consensus 1 ~GKss~~~~~~~~~ 14 (83)
||||++..++....
T Consensus 10 ~GKs~la~~l~~~~ 23 (287)
T TIGR00174 10 VGKSQLAIQLAKKL 23 (287)
T ss_pred CCHHHHHHHHHHhC
Confidence 79999999987653
No 474
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=61.22 E-value=11 Score=22.47 Aligned_cols=26 Identities=15% Similarity=0.123 Sum_probs=15.5
Q ss_pred CCcceeeeeeccCccceEEEEEEEeC
Q psy16649 1 SGENLCTLQIFRGCFQHNFHINYRDT 26 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~~~~~l~i~Dt 26 (83)
||||++...+..........+.+.+.
T Consensus 53 ~GKT~La~ai~~~~~~~~~~~~~i~~ 78 (227)
T PRK08903 53 SGRSHLLQALVADASYGGRNARYLDA 78 (227)
T ss_pred CCHHHHHHHHHHHHHhCCCcEEEEeh
Confidence 69999988876543333334444454
No 475
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=61.01 E-value=2.6 Score=23.91 Aligned_cols=14 Identities=14% Similarity=0.147 Sum_probs=11.7
Q ss_pred CCcceeeeeeccCc
Q psy16649 1 SGENLCTLQIFRGC 14 (83)
Q Consensus 1 ~GKss~~~~~~~~~ 14 (83)
||||+++.++....
T Consensus 11 sGKTtl~~~l~~~~ 24 (158)
T cd03112 11 AGKTTLLNHILTEQ 24 (158)
T ss_pred CCHHHHHHHHHhcc
Confidence 79999999887664
No 476
>PRK05642 DNA replication initiation factor; Validated
Probab=60.82 E-value=9.4 Score=23.17 Aligned_cols=10 Identities=10% Similarity=-0.011 Sum_probs=7.1
Q ss_pred CCcceeeeee
Q psy16649 1 SGENLCTLQI 10 (83)
Q Consensus 1 ~GKss~~~~~ 10 (83)
+|||.|+..+
T Consensus 56 ~GKTHLl~a~ 65 (234)
T PRK05642 56 VGRSHLLQAA 65 (234)
T ss_pred CCHHHHHHHH
Confidence 5888876655
No 477
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=60.56 E-value=37 Score=21.47 Aligned_cols=44 Identities=9% Similarity=0.135 Sum_probs=27.9
Q ss_pred hccCCcEEEEEEECCCh------hHHHH----HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 39 YYRGAMGIMLVYDITNE------KSFDN----IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 39 ~~~~~~~~ilv~d~~~~------~s~~~----~~~w~~~~~~~~~~~~piilvgN 83 (83)
-+.++|.+|+.-..... +-++. +++..+.+.+++ ++..+++++|
T Consensus 65 ~l~~aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~-~~~~vivvsN 118 (306)
T cd05291 65 DCKDADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASG-FDGIFLVASN 118 (306)
T ss_pred HhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEecC
Confidence 35789999998876422 22221 345666666666 5777888877
No 478
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=60.42 E-value=1.3 Score=29.76 Aligned_cols=13 Identities=8% Similarity=0.130 Sum_probs=10.5
Q ss_pred CCcceeeeeeccC
Q psy16649 1 SGENLCTLQIFRG 13 (83)
Q Consensus 1 ~GKss~~~~~~~~ 13 (83)
||||||+.++...
T Consensus 12 SGKTTLiekLI~~ 24 (452)
T PRK14495 12 AGKTGLVERLVAA 24 (452)
T ss_pred CCHHHHHHHHHHH
Confidence 7999999887643
No 479
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=60.33 E-value=2.6 Score=24.61 Aligned_cols=34 Identities=15% Similarity=0.207 Sum_probs=17.1
Q ss_pred CCcEEEEEEECCChhHHH-HHHHHHHHHHHhcCCCceEEEEe
Q psy16649 42 GAMGIMLVYDITNEKSFD-NIKNWIRNIEENASANVEKMLLG 82 (83)
Q Consensus 42 ~~~~~ilv~d~~~~~s~~-~~~~w~~~~~~~~~~~~piilvg 82 (83)
+.+++++ +.-+-|. ++.++.+.+.. .++++++.|
T Consensus 76 ~~dvI~I----DEaQFf~~~i~~l~~~~~~---~g~~Vi~~G 110 (176)
T PF00265_consen 76 DYDVIGI----DEAQFFDEQIVQLVEILAN---KGIPVICAG 110 (176)
T ss_dssp TCSEEEE----SSGGGSTTTHHHHHHHHHH---TT-EEEEEE
T ss_pred CCCEEEE----echHhhHHHHHHHHHHHHh---CCCeEEEEe
Confidence 3555554 3334444 45555555543 467777655
No 480
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=60.02 E-value=2.6 Score=26.05 Aligned_cols=31 Identities=19% Similarity=0.290 Sum_probs=23.2
Q ss_pred CCcceeeeeeccC--ccc----------------------eEEEEEEEeCCCchh
Q psy16649 1 SGENLCTLQIFRG--CFQ----------------------HNFHINYRDTAGQER 31 (83)
Q Consensus 1 ~GKss~~~~~~~~--~~~----------------------~~~~l~i~Dt~g~~~ 31 (83)
+|||.++.++... .|. ..+.+-+.||.|...
T Consensus 32 tGKSfLln~l~~~~~gF~~~~~~~~~T~Giw~w~~~~~~~~~~~v~llDteG~~~ 86 (260)
T PF02263_consen 32 TGKSFLLNQLLGPQSGFSWGPTVEPCTKGIWMWSEPLPDGEKVAVVLLDTEGLGD 86 (260)
T ss_dssp SSHHHHHHHHCCBSSSSESSSCSSST-SCEEEECCE-TTSTCEEEEEEEEECBTT
T ss_pred cchHHHHHHHhcccccccccCCCCCCCcceeeeecccccccceeEEEecchhccc
Confidence 6999999988753 232 468899999988755
No 481
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=59.98 E-value=28 Score=20.67 Aligned_cols=29 Identities=10% Similarity=0.245 Sum_probs=24.1
Q ss_pred cCCcEEEEEEECCChhHHHHHHHHHHHHH
Q psy16649 41 RGAMGIMLVYDITNEKSFDNIKNWIRNIE 69 (83)
Q Consensus 41 ~~~~~~ilv~d~~~~~s~~~~~~w~~~~~ 69 (83)
...|-++++.|+.++.|++.++.=+..+.
T Consensus 63 prIDlIVFvinl~sk~SL~~ve~SL~~vd 91 (176)
T PF11111_consen 63 PRIDLIVFVINLHSKYSLQSVEASLSHVD 91 (176)
T ss_pred ceeEEEEEEEecCCcccHHHHHHHHhhCC
Confidence 36799999999999999999987655554
No 482
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=59.38 E-value=1.2 Score=21.65 Aligned_cols=13 Identities=15% Similarity=0.245 Sum_probs=10.6
Q ss_pred CCcceeeeeeccC
Q psy16649 1 SGENLCTLQIFRG 13 (83)
Q Consensus 1 ~GKss~~~~~~~~ 13 (83)
||||++...+...
T Consensus 10 sGKst~~~~l~~~ 22 (69)
T cd02019 10 SGKSTVAKKLAEQ 22 (69)
T ss_pred CCHHHHHHHHHHH
Confidence 7999999887654
No 483
>TIGR01756 LDH_protist lactate dehydrogenase. This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.
Probab=59.32 E-value=41 Score=21.65 Aligned_cols=68 Identities=16% Similarity=0.169 Sum_probs=39.9
Q ss_pred ceEEEEEEEeCCCchhh-------------hc-----chh---hhccCCcEEEEEEECCCh---hHHHH-------HHHH
Q psy16649 16 QHNFHINYRDTAGQERF-------------RT-----ITT---AYYRGAMGIMLVYDITNE---KSFDN-------IKNW 64 (83)
Q Consensus 16 ~~~~~l~i~Dt~g~~~~-------------~~-----~~~---~~~~~~~~~ilv~d~~~~---~s~~~-------~~~w 64 (83)
.+.+.|++.|..+.+.. .. ... .-++++|.+|+.-..... +..+. ++..
T Consensus 13 ~~~~~l~L~D~~~~~~~a~g~a~Dl~d~~~~~~~~~i~~~~~~~~~~daDiVVitaG~~~k~g~tR~dll~~N~~I~~~i 92 (313)
T TIGR01756 13 NRPVCLHLLEIPPALNRLEALAMELEDCAFPNLAGTIVTTKLEEAFKDIDCAFLVASVPLKPGEVRADLLTKNTPIFKAT 92 (313)
T ss_pred CCeEEEEEecCCCccchhHhHHHHHHHhccccCCceEecCCHHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHH
Confidence 37889999998761110 00 001 355688888887665432 22221 3446
Q ss_pred HHHHHHhcCCCceEEEEeC
Q psy16649 65 IRNIEENASANVEKMLLGN 83 (83)
Q Consensus 65 ~~~~~~~~~~~~piilvgN 83 (83)
.+.+.++.+++..+++++|
T Consensus 93 ~~~i~~~a~~~~ivivvtN 111 (313)
T TIGR01756 93 GEALSEYAKPTVKVLVIGN 111 (313)
T ss_pred HHHHHhhCCCCeEEEEeCC
Confidence 6666666655677888887
No 484
>TIGR03369 cellulose_bcsE cellulose biosynthesis protein BcsE. This protein, called BcsE (bacterial cellulose synthase E) or YhjS, is required for cellulose biosynthesis in Salmonella enteritidis. Its role is this process across multiple bacterial species is implied by the partial phylogenetic profiling algorithm. Members are found in the vicinity of other cellulose biosynthesis genes. The model does not include a much less well-conserved N-terminal region about 150 amino acids in length for most members. Solano, et al. suggest this protein acts as a protease.
Probab=59.23 E-value=47 Score=21.66 Aligned_cols=41 Identities=10% Similarity=0.250 Sum_probs=34.5
Q ss_pred cCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEE
Q psy16649 41 RGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLL 81 (83)
Q Consensus 41 ~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilv 81 (83)
..+.+.-++|+.++.+-.+.+-.-+..+++.++..+-|++.
T Consensus 107 ~~a~AATvvfs~~~~~qle~La~qih~LRr~~G~aLKIvVR 147 (322)
T TIGR03369 107 SGAHAATVVLSCTGTTQLEQLAAQVHALRRQCGSALKIVVR 147 (322)
T ss_pred cccceeEEEEEcCCchHHHHHHHHHHHHHHhcCccceEEEE
Confidence 46788999999999999999988888999998777766653
No 485
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=58.95 E-value=34 Score=22.34 Aligned_cols=36 Identities=25% Similarity=0.344 Sum_probs=22.6
Q ss_pred CCcceeeeeeccCc-cc-----eEEEEEEEeCCC---chhhhcch
Q psy16649 1 SGENLCTLQIFRGC-FQ-----HNFHINYRDTAG---QERFRTIT 36 (83)
Q Consensus 1 ~GKss~~~~~~~~~-~~-----~~~~l~i~Dt~g---~~~~~~~~ 36 (83)
||||.+..++.... .+ ..-+.-..||-| .++...+.
T Consensus 137 sGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia 181 (344)
T PLN03187 137 SGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIA 181 (344)
T ss_pred CChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHH
Confidence 79999999885321 11 124667789987 45554443
No 486
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=58.35 E-value=36 Score=20.07 Aligned_cols=53 Identities=13% Similarity=0.061 Sum_probs=30.7
Q ss_pred eEEEEEEEeCCCchhhhcc-hhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHH
Q psy16649 17 HNFHINYRDTAGQERFRTI-TTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE 70 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~-~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~ 70 (83)
..+.+-+.|+.|.-..... .+...+.+|.++++.+. +..++..+....+.+++
T Consensus 115 ~~yD~ilID~~g~~~~~~~~~~l~~~~ad~vliv~~p-~~~sl~~~~~l~~~i~~ 168 (212)
T cd02117 115 DDLDVVLYDVLGDVVCGGFAMPIREGKADEIYIVTSG-EFMALYAANNICKGIRK 168 (212)
T ss_pred cCCCEEEEecCCCceecccccccccccCcEEEEEecc-cHHHHHHHHHHHHHHHH
Confidence 4678889999664321121 11123478999998865 45565555554444444
No 487
>PRK05569 flavodoxin; Provisional
Probab=57.96 E-value=26 Score=19.14 Aligned_cols=44 Identities=9% Similarity=0.178 Sum_probs=25.3
Q ss_pred hccCCcEEEEEEECCChhHH--HHHHHHHHHHHHhcCCCceEEEEe
Q psy16649 39 YYRGAMGIMLVYDITNEKSF--DNIKNWIRNIEENASANVEKMLLG 82 (83)
Q Consensus 39 ~~~~~~~~ilv~d~~~~~s~--~~~~~w~~~~~~~~~~~~piilvg 82 (83)
-+.++|++++..-.-...-+ ..+..+++.+......+-++.++|
T Consensus 45 ~~~~~d~iilgsPty~~~~~~~~~~~~~~~~l~~~~~~~K~v~~f~ 90 (141)
T PRK05569 45 DVLEADAVAFGSPSMDNNNIEQEEMAPFLDQFKLTPNENKKCILFG 90 (141)
T ss_pred HHhhCCEEEEECCCcCCCcCChHHHHHHHHHhhccCcCCCEEEEEe
Confidence 45678888887655333222 355666666654333456666665
No 488
>PLN02840 tRNA dimethylallyltransferase
Probab=57.87 E-value=4.7 Score=27.00 Aligned_cols=14 Identities=14% Similarity=0.313 Sum_probs=11.1
Q ss_pred CCcceeeeeeccCc
Q psy16649 1 SGENLCTLQIFRGC 14 (83)
Q Consensus 1 ~GKss~~~~~~~~~ 14 (83)
||||++..++...-
T Consensus 32 sGKTtla~~La~~~ 45 (421)
T PLN02840 32 AGKSRLALELAKRL 45 (421)
T ss_pred CCHHHHHHHHHHHC
Confidence 79999999876653
No 489
>PRK04132 replication factor C small subunit; Provisional
Probab=57.83 E-value=24 Score=26.03 Aligned_cols=81 Identities=22% Similarity=0.230 Sum_probs=40.3
Q ss_pred CcceeeeeeccCccce-----EEEEEEEeCCCchhhhcchhhhcc--C---CcEEEEEEECCChhHHHHHHHHHHHHHHh
Q psy16649 2 GENLCTLQIFRGCFQH-----NFHINYRDTAGQERFRTITTAYYR--G---AMGIMLVYDITNEKSFDNIKNWIRNIEEN 71 (83)
Q Consensus 2 GKss~~~~~~~~~~~~-----~~~l~i~Dt~g~~~~~~~~~~~~~--~---~~~~ilv~d~~~~~s~~~~~~w~~~~~~~ 71 (83)
||||...-+...-|.. -+.++=-|-.|.+..+.....+.+ . ...-|++.|=.+.-+-..-...++.+. .
T Consensus 578 GKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt~~AQnALLk~lE-e 656 (846)
T PRK04132 578 HNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTME-M 656 (846)
T ss_pred cHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCCHHHHHHHHHHhh-C
Confidence 8999887776654433 344444454566666655443332 1 122344444433333222222332332 2
Q ss_pred cCCCceEEEEeC
Q psy16649 72 ASANVEKMLLGN 83 (83)
Q Consensus 72 ~~~~~piilvgN 83 (83)
.+..++++++.|
T Consensus 657 p~~~~~FILi~N 668 (846)
T PRK04132 657 FSSNVRFILSCN 668 (846)
T ss_pred CCCCeEEEEEeC
Confidence 236788888765
No 490
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=57.69 E-value=1.4 Score=25.74 Aligned_cols=11 Identities=9% Similarity=0.271 Sum_probs=9.4
Q ss_pred CCcceeeeeec
Q psy16649 1 SGENLCTLQIF 11 (83)
Q Consensus 1 ~GKss~~~~~~ 11 (83)
||||+++.++.
T Consensus 17 sGKTTLi~~li 27 (173)
T PRK10751 17 TGKTTLLKKLI 27 (173)
T ss_pred ChHHHHHHHHH
Confidence 79999988866
No 491
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=57.60 E-value=46 Score=20.96 Aligned_cols=43 Identities=19% Similarity=0.246 Sum_probs=25.8
Q ss_pred ccCCcEEEEEEECCCh----------hHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 40 YRGAMGIMLVYDITNE----------KSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 40 ~~~~~~~ilv~d~~~~----------~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
+++||.+++....... +.+.-.+...+++.+.+ ++.-+++++|
T Consensus 64 l~dADiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~-p~~~iIv~sN 116 (300)
T cd01339 64 IAGSDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYA-PNAIVIVVTN 116 (300)
T ss_pred hCCCCEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecC
Confidence 5678888887643321 23333455677777766 4555667666
No 492
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=57.42 E-value=37 Score=21.61 Aligned_cols=45 Identities=7% Similarity=0.078 Sum_probs=28.3
Q ss_pred hhccCCcEEEEEEECCCh------hHHHH----HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 38 AYYRGAMGIMLVYDITNE------KSFDN----IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 38 ~~~~~~~~~ilv~d~~~~------~s~~~----~~~w~~~~~~~~~~~~piilvgN 83 (83)
.-+++||.+|+.-..... +-++. +++..+.+.++. ++..+++++|
T Consensus 60 ~~~~daDivVitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~-p~~~vivvsN 114 (299)
T TIGR01771 60 SDCKDADLVVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSG-FDGIFLVATN 114 (299)
T ss_pred HHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEeCC
Confidence 456789999988766322 22221 344566666654 6777888877
No 493
>PRK08233 hypothetical protein; Provisional
Probab=57.27 E-value=1.7 Score=24.70 Aligned_cols=13 Identities=15% Similarity=0.187 Sum_probs=10.4
Q ss_pred CCcceeeeeeccC
Q psy16649 1 SGENLCTLQIFRG 13 (83)
Q Consensus 1 ~GKss~~~~~~~~ 13 (83)
|||||+..++...
T Consensus 14 sGKtTla~~L~~~ 26 (182)
T PRK08233 14 GGKTTLTERLTHK 26 (182)
T ss_pred CCHHHHHHHHHhh
Confidence 7999999887653
No 494
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=57.23 E-value=24 Score=19.57 Aligned_cols=26 Identities=4% Similarity=0.111 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHHHHHHhcCCCceEEE
Q psy16649 55 EKSFDNIKNWIRNIEENASANVEKML 80 (83)
Q Consensus 55 ~~s~~~~~~w~~~~~~~~~~~~piil 80 (83)
+.||++=..-.+.++..-++.+|+|+
T Consensus 7 ~~s~e~R~~e~~~Ir~kyPdrIPVIv 32 (121)
T PTZ00380 7 SNPVEARRAECARLQAKYPGHVAVVV 32 (121)
T ss_pred cCCHHHHHHHHHHHHHHCCCccEEEE
Confidence 44566655566667777778899886
No 495
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=56.68 E-value=44 Score=20.46 Aligned_cols=51 Identities=14% Similarity=0.023 Sum_probs=29.8
Q ss_pred eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHH
Q psy16649 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIE 69 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~ 69 (83)
.++.+-|.||+|.-.... ...-+..||.++++... +..++..+....+.++
T Consensus 114 ~~yD~vIIDt~g~~~~~~-~~~al~~aD~vlip~~p-~~~~l~~~~~~~~~i~ 164 (267)
T cd02032 114 EEYDVILFDVLGDVVCGG-FAAPLNYADYALIVTDN-DFDSIFAANRIAAAVR 164 (267)
T ss_pred ccCCEEEEeCCCCccccc-chhhhhhcCEEEEEecC-CcccHHHHHHHHHHHH
Confidence 357788999976432111 12236788999997655 4445555555444443
No 496
>PTZ00035 Rad51 protein; Provisional
Probab=56.65 E-value=8 Score=24.99 Aligned_cols=28 Identities=21% Similarity=0.312 Sum_probs=17.6
Q ss_pred CCcceeeeeeccCcc-c-----eEEEEEEEeCCC
Q psy16649 1 SGENLCTLQIFRGCF-Q-----HNFHINYRDTAG 28 (83)
Q Consensus 1 ~GKss~~~~~~~~~~-~-----~~~~l~i~Dt~g 28 (83)
||||++..++....- + ..-+.-..||-+
T Consensus 129 sGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~ 162 (337)
T PTZ00035 129 TGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEG 162 (337)
T ss_pred CchhHHHHHHHHHhccccccCCCCceEEEEEccC
Confidence 799999988763221 0 223555678776
No 497
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=56.64 E-value=45 Score=20.65 Aligned_cols=57 Identities=18% Similarity=0.313 Sum_probs=31.7
Q ss_pred eEEEEEEEeCCCchhh-hcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 17 HNFHINYRDTAGQERF-RTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~-~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
..+.+.+..+.+.++- ..+....-+++||+|++ +.... .+.+... ...++|+|++++
T Consensus 30 ~Gy~l~l~~t~~~~~~e~~i~~l~~~~vDGiI~~-s~~~~--~~~l~~~-------~~~~iPvV~~~~ 87 (279)
T PF00532_consen 30 HGYQLLLCNTGDDEEKEEYIELLLQRRVDGIILA-SSEND--DEELRRL-------IKSGIPVVLIDR 87 (279)
T ss_dssp TTCEEEEEEETTTHHHHHHHHHHHHTTSSEEEEE-SSSCT--CHHHHHH-------HHTTSEEEEESS
T ss_pred cCCEEEEecCCCchHHHHHHHHHHhcCCCEEEEe-cccCC--hHHHHHH-------HHcCCCEEEEEe
Confidence 3456777777765433 33344455689999988 33322 2222221 113688888763
No 498
>PTZ00202 tuzin; Provisional
Probab=56.34 E-value=37 Score=23.68 Aligned_cols=28 Identities=18% Similarity=0.190 Sum_probs=17.8
Q ss_pred CCcceeeeeeccCccceEEEEEEEeCCCchh
Q psy16649 1 SGENLCTLQIFRGCFQHNFHINYRDTAGQER 31 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~~~~~l~i~Dt~g~~~ 31 (83)
||||+++..+...- . .-..+-|..|.+.
T Consensus 297 ~GKTTLlR~~~~~l--~-~~qL~vNprg~eE 324 (550)
T PTZ00202 297 CGKSSLCRSAVRKE--G-MPAVFVDVRGTED 324 (550)
T ss_pred CCHHHHHHHHHhcC--C-ceEEEECCCCHHH
Confidence 79999988877543 2 3355566666544
No 499
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=56.27 E-value=38 Score=23.16 Aligned_cols=37 Identities=22% Similarity=0.236 Sum_probs=24.5
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 42 GAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 42 ~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
+++. ++.|.++..+ ..+.+.++.++... +++|++. ||
T Consensus 237 GVd~--i~~D~a~g~~-~~~~~~i~~i~~~~-~~~~vi~-g~ 273 (475)
T TIGR01303 237 GVDV--LVIDTAHGHQ-VKMISAIKAVRALD-LGVPIVA-GN 273 (475)
T ss_pred CCCE--EEEeCCCCCc-HHHHHHHHHHHHHC-CCCeEEE-ec
Confidence 4554 7779999777 55556666666654 5788665 65
No 500
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=56.14 E-value=1.9 Score=25.19 Aligned_cols=12 Identities=25% Similarity=0.393 Sum_probs=9.6
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
||||++...+..
T Consensus 10 sGKSTl~~~l~~ 21 (198)
T cd02023 10 SGKTTVAEEIIE 21 (198)
T ss_pred CCHHHHHHHHHH
Confidence 799999888754
Done!