Query psy16649
Match_columns 83
No_of_seqs 201 out of 1082
Neff 10.0
Searched_HMMs 29240
Date Fri Aug 16 18:26:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16649.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16649hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 3E-30 1E-34 152.2 7.1 83 1-83 24-126 (216)
2 2fu5_C RAS-related protein RAB 99.9 9E-24 3.1E-28 120.3 8.6 83 1-83 19-121 (183)
3 3q3j_B RHO-related GTP-binding 99.9 5E-24 1.7E-28 124.7 7.4 82 1-83 38-139 (214)
4 2hup_A RAS-related protein RAB 99.9 8.5E-24 2.9E-28 122.6 7.2 83 1-83 40-142 (201)
5 2ew1_A RAS-related protein RAB 99.9 1.7E-23 5.7E-28 121.8 7.6 83 1-83 37-139 (201)
6 1m7b_A RND3/RHOE small GTP-bin 99.9 1.9E-23 6.4E-28 119.5 7.5 82 1-83 18-119 (184)
7 1r2q_A RAS-related protein RAB 99.9 4.4E-23 1.5E-27 115.7 8.4 83 1-83 17-119 (170)
8 1ek0_A Protein (GTP-binding pr 99.9 5.1E-23 1.7E-27 115.4 8.4 83 1-83 14-116 (170)
9 1gwn_A RHO-related GTP-binding 99.9 3.7E-23 1.3E-27 120.6 7.4 82 1-83 39-140 (205)
10 2a5j_A RAS-related protein RAB 99.9 4.2E-23 1.4E-27 118.6 7.4 83 1-83 32-134 (191)
11 2efe_B Small GTP-binding prote 99.9 1E-22 3.5E-27 115.5 8.7 83 1-83 23-125 (181)
12 3reg_A RHO-like small GTPase; 99.9 6E-23 2.1E-27 118.0 7.7 82 1-83 34-135 (194)
13 3c5c_A RAS-like protein 12; GD 99.9 3.8E-23 1.3E-27 118.7 6.7 82 1-83 32-135 (187)
14 3tkl_A RAS-related protein RAB 99.9 6.1E-23 2.1E-27 117.8 7.5 83 1-83 27-129 (196)
15 2bme_A RAB4A, RAS-related prot 99.9 6.2E-23 2.1E-27 116.9 7.4 83 1-83 21-123 (186)
16 3cpj_B GTP-binding protein YPT 99.9 6.4E-23 2.2E-27 120.4 7.6 83 1-83 24-126 (223)
17 1z0j_A RAB-22, RAS-related pro 99.9 1.3E-22 4.5E-27 113.8 8.4 83 1-83 17-119 (170)
18 1z08_A RAS-related protein RAB 99.9 3.7E-23 1.3E-27 116.2 6.1 83 1-83 17-119 (170)
19 2j0v_A RAC-like GTP-binding pr 99.9 3.6E-23 1.2E-27 120.4 6.1 82 1-83 20-121 (212)
20 2bcg_Y Protein YP2, GTP-bindin 99.9 9.9E-23 3.4E-27 118.0 8.0 83 1-83 19-121 (206)
21 2fg5_A RAB-22B, RAS-related pr 99.9 1E-22 3.5E-27 117.1 8.0 83 1-83 34-136 (192)
22 2yc2_C IFT27, small RAB-relate 99.9 1.8E-22 6.2E-27 116.6 8.8 83 1-83 31-140 (208)
23 1zbd_A Rabphilin-3A; G protein 99.9 1.2E-22 4E-27 117.4 8.0 83 1-83 19-121 (203)
24 2q3h_A RAS homolog gene family 99.9 7.8E-23 2.7E-27 118.0 7.2 82 1-83 31-132 (201)
25 2atx_A Small GTP binding prote 99.9 6.4E-23 2.2E-27 117.8 6.7 82 1-83 29-130 (194)
26 3r7w_B Gtpase2, GTP-binding pr 99.9 1.9E-23 6.6E-28 129.3 4.8 82 1-83 10-114 (331)
27 2o52_A RAS-related protein RAB 99.9 8.9E-23 3.1E-27 118.2 7.1 83 1-83 36-138 (200)
28 3l0i_B RAS-related protein RAB 99.9 4.8E-23 1.6E-27 119.0 5.9 83 1-83 44-146 (199)
29 3cbq_A GTP-binding protein REM 99.9 5.9E-23 2E-27 118.8 6.3 83 1-83 34-138 (195)
30 3t5g_A GTP-binding protein RHE 99.9 1.1E-22 3.8E-27 115.6 7.3 83 1-83 17-119 (181)
31 1g16_A RAS-related protein SEC 99.9 8.7E-23 3E-27 114.6 6.7 83 1-83 14-116 (170)
32 1z0f_A RAB14, member RAS oncog 99.9 1.3E-22 4.4E-27 114.7 7.4 83 1-83 26-128 (179)
33 3tw8_B RAS-related protein RAB 99.9 1.8E-22 6E-27 114.3 7.9 82 1-83 20-121 (181)
34 2g6b_A RAS-related protein RAB 99.9 1.1E-22 3.6E-27 115.3 6.9 83 1-83 21-124 (180)
35 1mh1_A RAC1; GTP-binding, GTPa 99.9 1.6E-22 5.4E-27 115.0 7.6 82 1-83 16-117 (186)
36 2il1_A RAB12; G-protein, GDP, 99.9 8.2E-23 2.8E-27 117.6 6.5 83 1-83 37-139 (192)
37 2p5s_A RAS and EF-hand domain 99.9 5.7E-23 1.9E-27 118.7 5.8 83 1-83 39-141 (199)
38 3dz8_A RAS-related protein RAB 99.9 1.7E-23 5.7E-28 120.2 3.5 83 1-83 34-136 (191)
39 2gf9_A RAS-related protein RAB 99.9 1.5E-22 5.1E-27 116.0 7.5 83 1-83 33-135 (189)
40 1z06_A RAS-related protein RAB 99.9 1.8E-22 6.2E-27 115.6 7.7 83 1-83 31-135 (189)
41 2y8e_A RAB-protein 6, GH09086P 99.9 1.6E-22 5.5E-27 114.3 7.3 83 1-83 25-127 (179)
42 3bwd_D RAC-like GTP-binding pr 99.9 7.6E-23 2.6E-27 116.1 5.8 82 1-83 19-120 (182)
43 1f6b_A SAR1; gtpases, N-termin 99.9 7E-23 2.4E-27 118.6 5.6 83 1-83 36-134 (198)
44 3kkq_A RAS-related protein M-R 99.9 1.3E-22 4.5E-27 115.4 6.6 83 1-83 29-131 (183)
45 3gj0_A GTP-binding nuclear pro 99.9 1.1E-22 3.9E-27 119.1 6.5 82 1-83 26-127 (221)
46 2hxs_A RAB-26, RAS-related pro 99.9 1.6E-22 5.5E-27 114.4 6.6 83 1-83 17-123 (178)
47 3q72_A GTP-binding protein RAD 99.9 1.7E-22 5.8E-27 113.2 6.7 83 1-83 13-114 (166)
48 1wms_A RAB-9, RAB9, RAS-relate 99.9 3E-22 1E-26 113.2 7.7 83 1-83 18-124 (177)
49 3ihw_A Centg3; RAS, centaurin, 99.9 9.9E-23 3.4E-27 116.9 5.6 78 1-83 31-127 (184)
50 4gzl_A RAS-related C3 botulinu 99.9 2.6E-22 9E-27 116.6 7.3 82 1-83 41-142 (204)
51 1r8s_A ADP-ribosylation factor 99.9 1.1E-22 3.9E-27 113.8 5.5 83 1-83 11-109 (164)
52 2j1l_A RHO-related GTP-binding 99.9 1.3E-22 4.5E-27 118.6 6.0 82 1-83 45-146 (214)
53 2iwr_A Centaurin gamma 1; ANK 99.9 2E-22 6.7E-27 114.3 6.4 78 1-83 18-116 (178)
54 4djt_A GTP-binding nuclear pro 99.9 3.9E-22 1.3E-26 116.4 7.8 83 1-83 22-125 (218)
55 1m2o_B GTP-binding protein SAR 99.9 2.4E-22 8.1E-27 115.7 6.4 83 1-83 34-132 (190)
56 2oil_A CATX-8, RAS-related pro 99.9 2.7E-22 9.1E-27 115.2 6.5 83 1-83 36-138 (193)
57 2gco_A H9, RHO-related GTP-bin 99.9 5.4E-22 1.8E-26 114.9 7.6 82 1-83 36-137 (201)
58 3cph_A RAS-related protein SEC 99.9 5.4E-22 1.8E-26 115.1 7.6 83 1-83 31-133 (213)
59 3q85_A GTP-binding protein REM 99.9 2.3E-22 7.8E-27 113.0 5.8 83 1-83 13-117 (169)
60 2fn4_A P23, RAS-related protei 99.9 4.4E-22 1.5E-26 112.6 7.0 83 1-83 20-122 (181)
61 1z2a_A RAS-related protein RAB 99.9 4.9E-22 1.7E-26 111.3 7.0 82 1-83 16-117 (168)
62 4bas_A ADP-ribosylation factor 99.9 3.9E-22 1.3E-26 114.6 6.6 83 1-83 28-135 (199)
63 1u8z_A RAS-related protein RAL 99.9 4.6E-22 1.6E-26 111.2 6.6 83 1-83 15-117 (168)
64 1c1y_A RAS-related protein RAP 99.9 2.4E-22 8.2E-27 112.5 5.3 83 1-83 14-116 (167)
65 1fzq_A ADP-ribosylation factor 99.9 3.4E-22 1.2E-26 114.2 5.9 83 1-83 27-125 (181)
66 3oes_A GTPase rhebl1; small GT 99.9 3.4E-22 1.2E-26 115.6 5.7 83 1-83 35-137 (201)
67 2fv8_A H6, RHO-related GTP-bin 99.9 9.3E-22 3.2E-26 114.3 7.4 82 1-83 36-137 (207)
68 1ky3_A GTP-binding protein YPT 99.9 3.8E-22 1.3E-26 113.0 5.6 83 1-83 19-126 (182)
69 1x3s_A RAS-related protein RAB 99.9 6.4E-22 2.2E-26 113.3 6.5 83 1-83 26-129 (195)
70 4dsu_A GTPase KRAS, isoform 2B 99.9 8.5E-22 2.9E-26 112.2 6.9 83 1-83 15-117 (189)
71 2b6h_A ADP-ribosylation factor 99.9 5E-22 1.7E-26 114.5 5.7 83 1-83 40-138 (192)
72 1zj6_A ADP-ribosylation factor 99.9 5.8E-22 2E-26 113.4 5.9 83 1-83 27-125 (187)
73 2h17_A ADP-ribosylation factor 99.9 6.8E-22 2.3E-26 112.7 6.1 83 1-83 32-130 (181)
74 1zd9_A ADP-ribosylation factor 99.9 5.7E-22 2E-26 113.7 5.7 83 1-83 33-132 (188)
75 1kao_A RAP2A; GTP-binding prot 99.9 1.1E-21 3.7E-26 109.6 6.6 83 1-83 14-116 (167)
76 2nzj_A GTP-binding protein REM 99.9 1.1E-21 3.7E-26 110.6 6.5 83 1-83 15-119 (175)
77 1upt_A ARL1, ADP-ribosylation 99.9 8.3E-22 2.8E-26 110.8 6.0 83 1-83 18-116 (171)
78 1vg8_A RAS-related protein RAB 99.9 9.5E-22 3.2E-26 113.7 6.2 83 1-83 19-125 (207)
79 2bov_A RAla, RAS-related prote 99.9 1.3E-21 4.4E-26 112.9 6.6 83 1-83 25-127 (206)
80 2a9k_A RAS-related protein RAL 99.9 1.4E-21 4.6E-26 111.1 6.5 83 1-83 29-131 (187)
81 2h57_A ADP-ribosylation factor 99.9 1.6E-21 5.3E-26 111.8 6.5 83 1-83 32-134 (190)
82 3bc1_A RAS-related protein RAB 99.9 2E-21 6.9E-26 110.9 6.9 83 1-83 22-135 (195)
83 3t1o_A Gliding protein MGLA; G 99.8 5.5E-22 1.9E-26 113.6 4.4 66 17-83 72-143 (198)
84 1ksh_A ARF-like protein 2; sma 99.8 1.8E-21 6.3E-26 111.0 6.4 83 1-83 29-127 (186)
85 2erx_A GTP-binding protein DI- 99.8 1.1E-21 3.9E-26 110.0 5.4 83 1-83 14-117 (172)
86 2g3y_A GTP-binding protein GEM 99.8 2.1E-21 7.2E-26 114.0 6.6 83 1-83 48-153 (211)
87 2f7s_A C25KG, RAS-related prot 99.8 7.2E-22 2.4E-26 115.2 4.6 83 1-83 36-149 (217)
88 3con_A GTPase NRAS; structural 99.8 4.5E-21 1.5E-25 109.7 7.3 83 1-83 32-134 (190)
89 3clv_A RAB5 protein, putative; 99.8 5.4E-21 1.9E-25 109.6 7.7 63 19-83 93-155 (208)
90 3llu_A RAS-related GTP-binding 99.8 1.4E-21 4.8E-26 112.7 5.2 82 1-83 31-137 (196)
91 2x77_A ADP-ribosylation factor 99.8 1E-21 3.6E-26 112.4 4.5 83 1-83 33-131 (189)
92 2atv_A RERG, RAS-like estrogen 99.8 2.1E-21 7.3E-26 111.8 5.8 82 1-83 39-140 (196)
93 2zej_A Dardarin, leucine-rich 99.8 9E-22 3.1E-26 112.6 4.0 82 1-83 13-120 (184)
94 2ce2_X GTPase HRAS; signaling 99.8 5.1E-21 1.7E-25 106.6 6.3 83 1-83 14-116 (166)
95 2gf0_A GTP-binding protein DI- 99.8 2.8E-21 9.5E-26 111.0 5.3 83 1-83 19-122 (199)
96 1moz_A ARL1, ADP-ribosylation 99.8 2E-21 7E-26 110.4 4.6 83 1-83 29-127 (183)
97 2cjw_A GTP-binding protein GEM 99.8 6.1E-21 2.1E-25 110.1 6.3 83 1-83 17-122 (192)
98 2wkq_A NPH1-1, RAS-related C3 99.8 9.8E-21 3.4E-25 115.9 7.5 82 1-83 166-267 (332)
99 3th5_A RAS-related C3 botulinu 99.7 3E-22 1E-26 115.9 0.0 82 1-83 41-142 (204)
100 3r7w_A Gtpase1, GTP-binding pr 99.8 8.9E-21 3.1E-25 116.4 6.4 83 1-83 14-123 (307)
101 3o47_A ADP-ribosylation factor 99.8 1.1E-20 3.6E-25 117.0 4.9 83 1-83 176-274 (329)
102 3lvq_E ARF-GAP with SH3 domain 99.8 2.8E-20 9.7E-25 119.7 6.2 83 1-83 333-431 (497)
103 2fh5_B SR-beta, signal recogni 99.8 8.8E-20 3E-24 106.1 6.3 83 1-83 18-123 (214)
104 2f9l_A RAB11B, member RAS onco 99.8 2.5E-19 8.5E-24 103.5 7.7 83 1-83 16-118 (199)
105 3c5h_A Glucocorticoid receptor 99.8 4.8E-20 1.6E-24 110.5 2.2 58 26-83 125-206 (255)
106 1oix_A RAS-related protein RAB 99.8 6.1E-19 2.1E-23 101.5 6.6 83 1-83 40-142 (191)
107 1azs_C GS-alpha; complex (lyas 99.8 1.6E-18 5.3E-23 109.8 7.9 66 18-83 216-292 (402)
108 1nrj_B SR-beta, signal recogni 99.8 1.1E-19 3.8E-24 105.9 2.2 83 1-83 23-128 (218)
109 2xtz_A Guanine nucleotide-bind 99.8 1.1E-18 3.7E-23 109.1 6.5 67 17-83 181-258 (354)
110 2ged_A SR-beta, signal recogni 99.8 1.7E-19 5.8E-24 103.3 1.8 83 1-83 59-164 (193)
111 4fid_A G protein alpha subunit 99.7 7.5E-18 2.6E-22 104.8 6.8 67 17-83 159-236 (340)
112 1cip_A Protein (guanine nucleo 99.7 2E-17 6.8E-22 103.4 7.0 66 18-83 192-268 (353)
113 2gj8_A MNME, tRNA modification 99.7 5.9E-18 2E-22 96.0 2.7 82 1-83 15-123 (172)
114 2lkc_A Translation initiation 99.7 4E-18 1.4E-22 96.2 2.0 76 1-83 19-115 (178)
115 3ohm_A Guanine nucleotide-bind 99.7 7.9E-17 2.7E-21 99.8 7.3 67 17-83 165-242 (327)
116 2wji_A Ferrous iron transport 99.7 7.8E-17 2.7E-21 90.6 5.4 77 1-83 14-116 (165)
117 1zcb_A G alpha I/13; GTP-bindi 99.7 1.3E-16 4.4E-21 100.0 6.5 67 17-83 199-276 (362)
118 2qu8_A Putative nucleolar GTP- 99.6 1E-16 3.5E-21 94.3 4.4 81 1-83 40-150 (228)
119 3dpu_A RAB family protein; roc 99.6 7.3E-17 2.5E-21 104.9 2.9 79 1-83 52-158 (535)
120 2cxx_A Probable GTP-binding pr 99.6 2.4E-17 8.3E-22 93.8 0.6 83 1-83 12-130 (190)
121 2dyk_A GTP-binding protein; GT 99.6 2.1E-16 7.1E-21 87.8 3.1 79 1-83 12-116 (161)
122 2wjg_A FEOB, ferrous iron tran 99.6 4.8E-16 1.6E-20 88.5 3.3 77 1-83 18-120 (188)
123 1svi_A GTP-binding protein YSX 99.6 3.9E-16 1.3E-20 89.3 2.5 79 1-83 34-142 (195)
124 3iev_A GTP-binding protein ERA 99.6 1.9E-15 6.3E-20 92.8 3.9 80 1-83 21-130 (308)
125 1wf3_A GTP-binding protein; GT 99.6 3.9E-15 1.3E-19 91.3 5.1 80 1-83 18-125 (301)
126 3def_A T7I23.11 protein; chlor 99.5 2.7E-15 9.2E-20 90.1 2.9 82 1-83 47-159 (262)
127 3iby_A Ferrous iron transport 99.5 4.2E-15 1.5E-19 89.3 2.7 77 1-83 12-118 (256)
128 1u0l_A Probable GTPase ENGC; p 99.5 2.2E-14 7.7E-19 87.8 5.9 74 5-83 32-123 (301)
129 3pqc_A Probable GTP-binding pr 99.5 5.6E-15 1.9E-19 84.2 3.0 77 1-83 34-141 (195)
130 3a1s_A Iron(II) transport prot 99.5 1.5E-14 5.2E-19 87.0 4.4 77 1-83 16-118 (258)
131 3gee_A MNME, tRNA modification 99.5 1.7E-14 5.7E-19 93.1 3.2 81 1-83 244-351 (476)
132 2hjg_A GTP-binding protein ENG 99.5 7.3E-15 2.5E-19 93.7 1.5 79 1-83 186-294 (436)
133 3i8s_A Ferrous iron transport 99.5 3.3E-14 1.1E-18 86.0 4.1 77 1-83 14-120 (274)
134 3b1v_A Ferrous iron uptake tra 99.4 2.7E-14 9.4E-19 86.5 2.6 77 1-83 14-115 (272)
135 3sjy_A Translation initiation 99.4 1.4E-13 4.7E-18 87.1 5.8 63 19-83 75-137 (403)
136 1mky_A Probable GTP-binding pr 99.4 8.9E-14 3.1E-18 88.7 4.7 77 1-83 12-118 (439)
137 1jny_A EF-1-alpha, elongation 99.4 1.1E-14 3.9E-19 92.8 0.6 65 18-83 83-152 (435)
138 3qq5_A Small GTP-binding prote 99.4 1E-13 3.4E-18 88.5 4.5 77 1-83 45-148 (423)
139 1lnz_A SPO0B-associated GTP-bi 99.4 2.3E-14 7.8E-19 89.3 1.3 83 1-83 169-282 (342)
140 1g7s_A Translation initiation 99.4 9E-14 3.1E-18 91.7 3.4 57 20-83 71-130 (594)
141 1h65_A Chloroplast outer envel 99.4 7.8E-14 2.7E-18 84.0 2.7 82 1-83 50-162 (270)
142 4dhe_A Probable GTP-binding pr 99.4 3.7E-14 1.3E-18 82.6 1.2 79 1-83 40-152 (223)
143 3cb4_D GTP-binding protein LEP 99.4 2.5E-13 8.7E-18 89.6 5.1 62 18-83 70-131 (599)
144 3lxx_A GTPase IMAP family memb 99.4 1.4E-13 4.7E-18 81.5 3.3 81 1-83 40-153 (239)
145 2hjg_A GTP-binding protein ENG 99.4 5.6E-14 1.9E-18 89.6 1.4 79 1-83 14-119 (436)
146 3k53_A Ferrous iron transport 99.4 3E-13 1E-17 81.5 4.3 78 1-83 14-117 (271)
147 2e87_A Hypothetical protein PH 99.4 6.9E-13 2.4E-17 82.7 6.0 82 1-83 178-288 (357)
148 2ywe_A GTP-binding protein LEP 99.4 5.9E-13 2E-17 87.9 5.5 62 18-83 72-133 (600)
149 4dcu_A GTP-binding protein ENG 99.4 2.1E-13 7.1E-18 87.4 2.8 79 1-83 206-314 (456)
150 3tr5_A RF-3, peptide chain rel 99.4 4.6E-13 1.6E-17 87.3 4.1 62 18-83 81-142 (528)
151 1n0u_A EF-2, elongation factor 99.4 5.8E-13 2E-17 90.6 4.7 62 18-83 97-158 (842)
152 2xtp_A GTPase IMAP family memb 99.4 1.6E-12 5.6E-17 77.6 5.9 83 1-83 33-147 (260)
153 1r5b_A Eukaryotic peptide chai 99.4 9.6E-14 3.3E-18 89.3 0.6 66 18-83 120-189 (467)
154 2qtf_A Protein HFLX, GTP-bindi 99.3 2.3E-12 7.9E-17 80.8 6.7 82 1-83 190-300 (364)
155 3izy_P Translation initiation 99.3 2.6E-14 9E-19 93.3 -2.5 79 1-83 15-112 (537)
156 3j2k_7 ERF3, eukaryotic polype 99.3 6.4E-13 2.2E-17 85.0 3.6 66 18-83 94-163 (439)
157 1zun_B Sulfate adenylate trans 99.3 1.5E-12 5.3E-17 83.0 5.0 63 18-83 103-165 (434)
158 3p26_A Elongation factor 1 alp 99.3 1.2E-12 4E-17 84.5 4.4 66 17-83 109-179 (483)
159 4dcu_A GTP-binding protein ENG 99.3 2.2E-13 7.5E-18 87.3 0.9 79 1-83 34-139 (456)
160 3lxw_A GTPase IMAP family memb 99.3 2.9E-12 1E-16 76.5 5.5 81 1-83 32-147 (247)
161 1f60_A Elongation factor EEF1A 99.3 3.5E-13 1.2E-17 86.5 1.3 64 17-83 83-153 (458)
162 2c78_A Elongation factor TU-A; 99.3 1.9E-12 6.6E-17 81.8 3.9 62 18-83 74-136 (405)
163 1xzp_A Probable tRNA modificat 99.3 6.6E-13 2.3E-17 85.8 1.8 77 1-83 254-358 (482)
164 1d2e_A Elongation factor TU (E 99.3 3.3E-12 1.1E-16 80.7 4.2 61 19-83 66-127 (397)
165 1zo1_I IF2, translation initia 99.3 4.2E-13 1.5E-17 87.1 0.1 76 1-83 15-111 (501)
166 3geh_A MNME, tRNA modification 99.3 1.3E-12 4.4E-17 84.1 2.2 77 1-83 235-338 (462)
167 2elf_A Protein translation elo 99.3 2.4E-12 8.2E-17 80.9 3.2 78 1-83 32-120 (370)
168 3izq_1 HBS1P, elongation facto 99.3 1.1E-12 3.8E-17 86.7 1.4 66 18-83 244-313 (611)
169 1dar_A EF-G, elongation factor 99.2 4.3E-12 1.5E-16 84.9 3.5 62 18-83 76-137 (691)
170 1s0u_A EIF-2-gamma, translatio 99.2 3.1E-11 1.1E-15 76.4 6.5 59 19-83 81-143 (408)
171 1wb1_A Translation elongation 99.2 1.1E-11 3.9E-16 80.0 4.1 76 1-83 30-133 (482)
172 2aka_B Dynamin-1; fusion prote 99.2 1E-11 3.4E-16 75.2 3.5 62 19-83 125-200 (299)
173 2rdo_7 EF-G, elongation factor 99.2 2.6E-11 8.9E-16 81.3 5.5 61 19-83 82-142 (704)
174 2qag_A Septin-2, protein NEDD5 99.2 2.5E-12 8.6E-17 80.5 0.6 62 18-83 94-182 (361)
175 3t34_A Dynamin-related protein 99.2 4.1E-12 1.4E-16 79.3 1.5 62 20-83 137-211 (360)
176 2h5e_A Peptide chain release f 99.2 8.9E-12 3.1E-16 81.3 3.1 62 18-83 81-142 (529)
177 1kk1_A EIF2gamma; initiation o 99.2 5E-11 1.7E-15 75.5 5.9 59 19-83 83-145 (410)
178 1ega_A Protein (GTP-binding pr 99.1 1.9E-11 6.4E-16 74.9 3.1 78 1-83 19-124 (301)
179 2xex_A Elongation factor G; GT 99.1 3E-11 1E-15 80.9 3.6 62 18-83 74-135 (693)
180 3avx_A Elongation factor TS, e 99.1 5E-11 1.7E-15 83.4 2.9 61 19-83 359-420 (1289)
181 2qpt_A EH domain-containing pr 99.1 2.2E-11 7.5E-16 79.8 0.5 61 20-83 155-226 (550)
182 2dy1_A Elongation factor G; tr 99.1 1.7E-10 5.8E-15 77.0 4.7 63 17-83 72-134 (665)
183 3t5d_A Septin-7; GTP-binding p 99.0 1.9E-10 6.4E-15 69.4 4.0 61 19-83 65-152 (274)
184 1mky_A Probable GTP-binding pr 99.0 2.4E-10 8.1E-15 73.0 3.7 79 1-83 191-300 (439)
185 2j69_A Bacterial dynamin-like 99.0 4.5E-10 1.5E-14 75.3 3.9 61 20-83 175-238 (695)
186 1pui_A ENGB, probable GTP-bind 98.9 1.4E-09 4.9E-14 62.6 5.4 77 1-83 37-145 (210)
187 2yv5_A YJEQ protein; hydrolase 98.9 3.1E-09 1E-13 65.2 6.2 64 17-83 48-118 (302)
188 1jwy_B Dynamin A GTPase domain 98.9 5E-10 1.7E-14 68.3 2.6 61 20-83 132-206 (315)
189 3mca_A HBS1, elongation factor 98.9 4.3E-12 1.5E-16 83.7 -7.0 38 18-55 254-291 (592)
190 1wxq_A GTP-binding protein; st 98.9 2E-09 6.8E-14 68.2 4.4 37 19-55 71-114 (397)
191 3l82_B F-box only protein 4; T 98.8 8.2E-10 2.8E-14 65.1 1.5 57 26-83 109-170 (227)
192 2x2e_A Dynamin-1; nitration, h 98.8 3.1E-09 1.1E-13 66.2 3.6 63 19-83 130-205 (353)
193 1jal_A YCHF protein; nucleotid 98.7 1.1E-08 3.6E-13 64.4 4.4 36 19-54 66-108 (363)
194 3l2o_B F-box only protein 4; s 98.7 9.9E-09 3.4E-13 63.0 2.4 58 26-83 194-255 (312)
195 1udx_A The GTP-binding protein 98.6 1.8E-08 6.1E-13 64.3 2.7 82 1-83 168-277 (416)
196 2ohf_A Protein OLA1, GTP-bindi 98.6 2.3E-08 7.8E-13 63.5 2.4 41 20-60 87-134 (396)
197 2qag_C Septin-7; cell cycle, c 98.6 2.9E-08 9.8E-13 63.4 2.5 79 1-83 42-175 (418)
198 2qnr_A Septin-2, protein NEDD5 98.5 1.6E-08 5.6E-13 61.9 -0.0 63 18-83 75-163 (301)
199 2dby_A GTP-binding protein; GD 98.4 2.8E-07 9.6E-12 58.0 3.6 36 19-54 69-111 (368)
200 3vqt_A RF-3, peptide chain rel 98.3 5.3E-07 1.8E-11 59.3 4.4 63 17-83 98-160 (548)
201 3j25_A Tetracycline resistance 98.0 4.1E-07 1.4E-11 60.6 -1.6 39 17-55 65-103 (638)
202 3h2y_A GTPase family protein; 97.9 8E-06 2.7E-10 51.3 3.0 51 27-83 54-104 (368)
203 4fn5_A EF-G 1, elongation fact 97.5 0.00023 7.9E-09 48.1 6.2 63 17-83 83-145 (709)
204 3ec1_A YQEH GTPase; atnos1, at 97.5 2.3E-05 8E-10 49.2 1.1 53 25-83 54-106 (369)
205 4a9a_A Ribosome-interacting GT 97.4 5E-05 1.7E-09 48.0 1.7 56 1-56 83-163 (376)
206 1yrb_A ATP(GTP)binding protein 97.4 0.0002 6.8E-09 42.3 3.9 62 19-83 109-179 (262)
207 2www_A Methylmalonic aciduria 97.3 6.1E-05 2.1E-09 47.0 1.2 36 19-57 167-202 (349)
208 3zvr_A Dynamin-1; hydrolase, D 97.2 0.00015 5E-09 49.7 2.4 60 21-83 152-225 (772)
209 1bif_A 6-phosphofructo-2-kinas 97.1 0.0002 6.8E-09 46.2 1.7 70 1-71 50-148 (469)
210 1ni3_A YCHF GTPase, YCHF GTP-b 96.9 0.00036 1.2E-08 44.3 2.0 35 20-54 86-127 (392)
211 3p32_A Probable GTPase RV1496/ 95.8 0.00094 3.2E-08 41.6 -0.9 38 18-58 171-208 (355)
212 1puj_A YLQF, conserved hypothe 95.5 0.013 4.4E-07 35.5 3.3 53 23-83 3-58 (282)
213 2p67_A LAO/AO transport system 95.3 0.0039 1.3E-07 38.7 0.5 37 18-57 148-184 (341)
214 3cnl_A YLQF, putative uncharac 95.2 0.00077 2.6E-08 40.5 -2.7 30 1-30 110-155 (262)
215 2wsm_A Hydrogenase expression/ 94.9 0.022 7.5E-07 32.6 2.9 34 19-56 109-143 (221)
216 4dzz_A Plasmid partitioning pr 91.8 0.69 2.3E-05 25.8 5.7 62 18-83 75-138 (206)
217 3k9g_A PF-32 protein; ssgcid, 91.0 1.3 4.6E-05 25.9 6.6 63 17-83 143-205 (267)
218 2chg_A Replication factor C sm 88.9 0.47 1.6E-05 26.4 3.3 12 1-12 49-60 (226)
219 3co5_A Putative two-component 87.8 0.62 2.1E-05 24.9 3.2 14 1-14 38-51 (143)
220 3ea0_A ATPase, para family; al 86.3 3.1 0.00011 23.8 5.9 53 17-72 117-169 (245)
221 2orw_A Thymidine kinase; TMTK, 85.4 0.18 6.2E-06 28.5 0.2 12 1-12 14-25 (184)
222 1fnn_A CDC6P, cell division co 84.6 0.86 3E-05 27.9 3.0 13 1-13 55-67 (389)
223 3kjh_A CO dehydrogenase/acetyl 80.8 5.3 0.00018 22.8 5.2 52 17-71 130-181 (254)
224 3u61_B DNA polymerase accessor 80.6 3.7 0.00013 24.7 4.7 13 1-13 59-71 (324)
225 3cnl_A YLQF, putative uncharac 80.4 0.35 1.2E-05 28.9 0.1 23 36-58 15-37 (262)
226 2yxb_A Coenzyme B12-dependent 79.6 5.3 0.00018 22.0 4.8 39 42-82 69-107 (161)
227 2ph1_A Nucleotide-binding prot 78.1 4.5 0.00015 23.7 4.4 53 17-70 127-179 (262)
228 2hf9_A Probable hydrogenase ni 76.7 0.17 5.8E-06 28.9 -2.0 15 1-15 49-63 (226)
229 1t9h_A YLOQ, probable GTPase E 76.6 4.3 0.00015 25.0 4.1 47 34-83 78-125 (307)
230 1ccw_A Protein (glutamate muta 76.0 5.7 0.0002 21.2 4.1 40 41-82 53-92 (137)
231 2qm8_A GTPase/ATPase; G protei 75.6 1.6 5.6E-05 26.9 2.1 35 19-56 148-182 (337)
232 1f5n_A Interferon-induced guan 75.1 0.43 1.5E-05 32.1 -0.7 31 1-31 49-103 (592)
233 3ezx_A MMCP 1, monomethylamine 75.0 9 0.00031 22.2 5.0 42 41-82 142-184 (215)
234 3ro3_B Minsc, peptide of prote 74.7 2.7 9.1E-05 15.3 1.8 13 58-70 7-19 (22)
235 4djd_C C/Fe-SP, corrinoid/iron 74.6 15 0.00052 24.0 7.2 75 2-82 77-162 (446)
236 3q9l_A Septum site-determining 74.2 10 0.00035 21.8 5.4 50 18-70 113-162 (260)
237 3cwq_A Para family chromosome 72.1 11 0.00038 21.3 6.1 61 18-83 67-128 (209)
238 1wcv_1 SOJ, segregation protei 70.2 14 0.00046 21.5 7.1 62 18-82 111-176 (257)
239 1sxj_D Activator 1 41 kDa subu 70.0 2.7 9.2E-05 25.4 2.1 13 1-13 69-81 (353)
240 3rl5_A Metallophosphoesterase 69.8 4.5 0.00015 24.8 3.0 59 19-83 61-119 (296)
241 2v1u_A Cell division control p 69.7 9.9 0.00034 23.1 4.6 13 1-13 55-67 (387)
242 3bos_A Putative DNA replicatio 69.3 0.53 1.8E-05 26.7 -1.1 13 1-13 63-75 (242)
243 1zpw_X Hypothetical protein TT 67.6 9.8 0.00034 18.9 3.8 17 45-61 5-21 (90)
244 1y80_A Predicted cobalamin bin 67.4 14 0.00049 21.0 4.7 39 42-82 139-178 (210)
245 2oze_A ORF delta'; para, walke 66.4 18 0.0006 21.4 6.5 59 17-78 153-214 (298)
246 3dz1_A Dihydrodipicolinate syn 66.4 7.4 0.00025 23.9 3.5 40 41-81 101-140 (313)
247 1uoz_A Putative cellulase; hyd 66.2 10 0.00036 23.6 4.1 39 42-81 89-137 (315)
248 2ark_A Flavodoxin; FMN, struct 65.8 15 0.00051 20.3 5.1 58 19-82 35-95 (188)
249 1njg_A DNA polymerase III subu 65.5 2.4 8.4E-05 23.7 1.2 12 1-12 56-67 (250)
250 3gv0_A Transcriptional regulat 63.9 19 0.00065 20.9 5.0 33 17-49 39-73 (288)
251 3exc_X Uncharacterized protein 63.7 12 0.00042 18.7 3.9 15 44-58 4-18 (91)
252 2ivy_A Hypothetical protein SS 63.7 11 0.00039 19.2 3.4 16 45-60 4-19 (101)
253 2wkj_A N-acetylneuraminate lya 63.1 12 0.00041 22.8 4.0 39 41-80 105-143 (303)
254 1w4r_A Thymidine kinase; type 62.3 0.95 3.3E-05 26.2 -0.9 36 40-82 89-124 (195)
255 3qk7_A Transcriptional regulat 61.8 12 0.0004 22.0 3.7 56 17-82 39-95 (294)
256 1sxj_B Activator 1 37 kDa subu 61.5 2.9 9.8E-05 24.9 1.0 13 1-13 53-65 (323)
257 3eb2_A Putative dihydrodipicol 61.1 19 0.00066 21.9 4.6 38 41-80 98-135 (300)
258 2qz4_A Paraplegin; AAA+, SPG7, 60.5 5.9 0.0002 22.8 2.2 13 1-13 50-62 (262)
259 4gp7_A Metallophosphoesterase; 60.4 1.1 3.7E-05 24.7 -0.9 9 1-9 20-28 (171)
260 3e2i_A Thymidine kinase; Zn-bi 60.3 2.1 7E-05 25.3 0.2 9 74-82 127-135 (219)
261 1uf3_A Hypothetical protein TT 59.7 20 0.0007 19.9 5.5 59 21-83 9-72 (228)
262 3ib7_A ICC protein; metallopho 59.5 18 0.00062 21.5 4.3 41 41-83 65-109 (330)
263 3io5_A Recombination and repai 58.8 4.5 0.00015 25.4 1.6 29 1-29 39-69 (333)
264 3hyn_A Putative signal transdu 57.9 19 0.00065 20.8 3.9 54 24-81 60-115 (189)
265 1kgd_A CASK, peripheral plasma 57.7 1 3.5E-05 25.0 -1.4 12 1-12 16-27 (180)
266 2z43_A DNA repair and recombin 57.4 14 0.00047 22.5 3.6 29 1-29 118-152 (324)
267 4h7p_A Malate dehydrogenase; s 57.3 25 0.00084 22.0 4.7 45 39-83 97-151 (345)
268 3c8u_A Fructokinase; YP_612366 57.3 1.1 3.8E-05 25.4 -1.2 10 1-10 33-42 (208)
269 2vc6_A MOSA, dihydrodipicolina 57.2 18 0.00063 21.8 4.1 39 40-80 93-131 (292)
270 3q5d_A Atlastin-1; G protein, 57.0 1.8 6.2E-05 28.1 -0.4 11 1-11 78-88 (447)
271 2yxg_A DHDPS, dihydrodipicolin 56.6 19 0.00065 21.7 4.1 38 41-80 94-131 (289)
272 2ehh_A DHDPS, dihydrodipicolin 56.3 19 0.00065 21.8 4.0 39 40-80 93-131 (294)
273 3b4u_A Dihydrodipicolinate syn 56.3 14 0.00048 22.4 3.4 40 41-80 97-138 (294)
274 3m5v_A DHDPS, dihydrodipicolin 56.0 20 0.00067 21.8 4.1 39 41-81 102-140 (301)
275 3daq_A DHDPS, dihydrodipicolin 55.8 18 0.00062 21.9 3.9 38 41-80 96-133 (292)
276 3tr0_A Guanylate kinase, GMP k 55.8 1.1 3.9E-05 24.9 -1.4 12 1-12 18-29 (205)
277 1hyq_A MIND, cell division inh 55.7 27 0.00093 20.1 6.3 52 17-71 109-160 (263)
278 3end_A Light-independent proto 55.7 30 0.001 20.6 7.1 61 17-79 155-216 (307)
279 1w3i_A EDA, 2-keto-3-deoxy glu 55.6 21 0.00072 21.6 4.1 38 41-80 90-128 (293)
280 1sxj_A Activator 1 95 kDa subu 55.5 12 0.00041 24.4 3.2 13 1-13 88-100 (516)
281 1zp6_A Hypothetical protein AT 55.5 1.1 3.9E-05 24.7 -1.4 13 1-13 20-32 (191)
282 1xky_A Dihydrodipicolinate syn 55.4 19 0.00064 21.9 3.9 39 40-80 105-143 (301)
283 3tak_A DHDPS, dihydrodipicolin 55.1 21 0.0007 21.6 4.0 38 41-80 95-132 (291)
284 3kb2_A SPBC2 prophage-derived 54.8 1.2 4.1E-05 24.0 -1.4 12 1-12 12-23 (173)
285 3qze_A DHDPS, dihydrodipicolin 54.6 21 0.00071 21.9 4.0 39 41-81 117-155 (314)
286 1dfm_A Endonuclease bglii; res 54.4 21 0.00071 21.2 3.8 27 56-82 143-169 (223)
287 1htw_A HI0065; nucleotide-bind 54.4 1.6 5.4E-05 24.0 -0.9 13 1-13 44-56 (158)
288 3cpr_A Dihydrodipicolinate syn 54.2 22 0.00074 21.7 4.0 38 41-80 110-147 (304)
289 3asz_A Uridine kinase; cytidin 54.0 1.3 4.4E-05 25.0 -1.4 12 1-12 17-28 (211)
290 1ye8_A Protein THEP1, hypothet 53.9 1.6 5.6E-05 24.4 -0.9 10 1-10 11-20 (178)
291 3flu_A DHDPS, dihydrodipicolin 53.8 22 0.00076 21.5 4.0 39 41-81 101-139 (297)
292 1f6k_A N-acetylneuraminate lya 53.3 21 0.00072 21.6 3.9 38 41-80 98-135 (293)
293 3si9_A DHDPS, dihydrodipicolin 53.0 23 0.00079 21.7 4.1 39 41-81 116-154 (315)
294 1kag_A SKI, shikimate kinase I 52.9 1.3 4.5E-05 24.0 -1.4 12 1-12 15-26 (173)
295 3a00_A Guanylate kinase, GMP k 52.5 1.4 4.7E-05 24.5 -1.4 11 1-11 12-22 (186)
296 2vzf_A NADH-dependent FMN redu 52.3 5.5 0.00019 22.4 1.1 44 39-82 66-109 (197)
297 1np6_A Molybdopterin-guanine d 52.3 1.3 4.5E-05 24.8 -1.5 13 1-13 17-29 (174)
298 3p7m_A Malate dehydrogenase; p 51.9 30 0.001 21.3 4.4 45 38-83 69-123 (321)
299 2yvt_A Hypothetical protein AQ 51.9 31 0.0011 19.7 5.9 38 21-58 9-48 (260)
300 3rui_B Autophagy-related prote 51.8 16 0.00055 19.3 2.8 27 54-80 9-35 (118)
301 1o5k_A DHDPS, dihydrodipicolin 51.4 20 0.00068 21.9 3.6 38 41-80 106-143 (306)
302 2ojp_A DHDPS, dihydrodipicolin 51.4 20 0.0007 21.6 3.6 38 41-80 95-132 (292)
303 2fz5_A Flavodoxin; alpha/beta 51.4 12 0.00041 19.2 2.4 43 39-82 43-87 (137)
304 3lw7_A Adenylate kinase relate 51.3 1.5 5E-05 23.5 -1.4 10 1-10 12-21 (179)
305 3h4m_A Proteasome-activating n 51.2 25 0.00086 20.5 3.9 13 1-13 62-74 (285)
306 1eo6_A GATE-16, golgi-associat 51.1 18 0.00061 19.0 2.9 25 56-80 9-33 (117)
307 1ly1_A Polynucleotide kinase; 51.1 1.5 5.1E-05 23.8 -1.4 12 1-12 13-24 (181)
308 4a74_A DNA repair and recombin 50.9 1.5 5.3E-05 24.7 -1.4 12 1-12 36-47 (231)
309 1znw_A Guanylate kinase, GMP k 50.9 2 6.8E-05 24.3 -0.9 11 1-11 31-41 (207)
310 1iqp_A RFCS; clamp loader, ext 50.9 4.6 0.00016 24.0 0.7 13 1-13 57-69 (327)
311 2pcj_A ABC transporter, lipopr 50.7 2 6.8E-05 24.9 -0.9 14 1-14 41-54 (224)
312 3e96_A Dihydrodipicolinate syn 50.7 18 0.00063 22.1 3.3 39 41-81 105-143 (316)
313 2v9d_A YAGE; dihydrodipicolini 50.6 24 0.00081 22.0 3.8 38 41-80 125-162 (343)
314 3tif_A Uncharacterized ABC tra 50.6 2 7E-05 25.1 -0.9 14 1-14 42-55 (235)
315 2rfg_A Dihydrodipicolinate syn 50.3 21 0.00071 21.7 3.5 38 41-80 94-131 (297)
316 3d0c_A Dihydrodipicolinate syn 50.1 21 0.00071 21.9 3.5 38 41-80 105-142 (314)
317 3l21_A DHDPS, dihydrodipicolin 50.0 20 0.00069 21.8 3.4 39 41-81 109-147 (304)
318 2j37_W Signal recognition part 50.0 44 0.0015 22.1 5.2 39 18-56 183-227 (504)
319 3hcw_A Maltose operon transcri 49.9 34 0.0012 20.0 4.4 57 17-83 41-99 (295)
320 1v5w_A DMC1, meiotic recombina 49.9 23 0.00078 21.8 3.7 28 1-28 133-166 (343)
321 1g3q_A MIND ATPase, cell divis 49.9 33 0.0011 19.3 7.0 52 17-71 110-161 (237)
322 2r8w_A AGR_C_1641P; APC7498, d 49.8 21 0.00071 22.1 3.5 38 41-80 128-165 (332)
323 2ehv_A Hypothetical protein PH 49.7 1.7 5.7E-05 24.9 -1.4 11 1-11 41-51 (251)
324 2i2x_B MTAC, methyltransferase 49.6 25 0.00085 20.8 3.7 38 42-82 174-211 (258)
325 3na8_A Putative dihydrodipicol 49.5 21 0.00072 21.9 3.5 39 41-81 118-156 (315)
326 2r91_A 2-keto-3-deoxy-(6-phosp 49.5 22 0.00074 21.4 3.5 38 41-80 89-127 (286)
327 2zjd_A Microtubule-associated 49.3 19 0.00067 19.3 2.9 25 56-80 16-40 (130)
328 2bdt_A BH3686; alpha-beta prot 49.2 1.7 5.8E-05 24.0 -1.4 12 1-12 13-24 (189)
329 3b85_A Phosphate starvation-in 49.2 2.5 8.6E-05 24.3 -0.6 12 1-12 33-44 (208)
330 2jaq_A Deoxyguanosine kinase; 49.1 1.7 5.7E-05 24.1 -1.4 12 1-12 11-22 (205)
331 3lnc_A Guanylate kinase, GMP k 49.0 1.9 6.6E-05 24.7 -1.2 11 1-11 38-48 (231)
332 2nuw_A 2-keto-3-deoxygluconate 48.9 22 0.00075 21.5 3.4 38 41-80 90-128 (288)
333 4e6n_A Metallophosphoesterase; 48.6 35 0.0012 22.1 4.3 28 48-75 300-327 (427)
334 1lvg_A Guanylate kinase, GMP k 48.6 1.8 6E-05 24.5 -1.4 12 1-12 15-26 (198)
335 3t61_A Gluconokinase; PSI-biol 48.6 1.7 5.9E-05 24.3 -1.4 12 1-12 29-40 (202)
336 2rcn_A Probable GTPase ENGC; Y 48.5 48 0.0016 20.8 5.3 27 40-66 128-154 (358)
337 1sxj_C Activator 1 40 kDa subu 48.3 8.4 0.00029 23.4 1.6 13 1-13 57-69 (340)
338 2xmo_A LMO2642 protein; phosph 48.1 23 0.00079 22.3 3.6 40 41-83 91-134 (443)
339 2vp4_A Deoxynucleoside kinase; 48.1 2.3 7.8E-05 24.5 -1.0 13 1-13 31-43 (230)
340 1xjc_A MOBB protein homolog; s 48.0 1.7 5.9E-05 24.4 -1.4 12 1-12 15-26 (169)
341 2r2q_A Gamma-aminobutyric acid 48.0 22 0.00074 18.4 2.9 25 56-80 8-32 (110)
342 1qhx_A CPT, protein (chloramph 47.9 1.8 6.2E-05 23.6 -1.4 12 1-12 14-25 (178)
343 2v6b_A L-LDH, L-lactate dehydr 47.6 41 0.0014 20.3 4.5 44 39-83 64-117 (304)
344 4eun_A Thermoresistant glucoki 47.6 1.8 6.3E-05 24.3 -1.4 12 1-12 40-51 (200)
345 1oju_A MDH, malate dehydrogena 47.4 31 0.001 21.0 3.9 45 38-83 65-119 (294)
346 2j41_A Guanylate kinase; GMP, 47.3 1.9 6.4E-05 24.0 -1.4 13 1-13 17-29 (207)
347 3k4h_A Putative transcriptiona 47.3 35 0.0012 19.7 4.1 56 17-82 42-99 (292)
348 2pd2_A Hypothetical protein ST 47.3 26 0.0009 17.4 5.4 11 50-60 5-15 (108)
349 2onk_A Molybdate/tungstate ABC 47.0 2.5 8.6E-05 24.9 -0.9 14 1-14 35-48 (240)
350 2cbz_A Multidrug resistance-as 46.9 2.5 8.6E-05 24.7 -0.9 13 1-13 42-54 (237)
351 1nks_A Adenylate kinase; therm 46.9 1.9 6.5E-05 23.6 -1.4 12 1-12 12-23 (194)
352 2z0h_A DTMP kinase, thymidylat 46.7 1.9 6.6E-05 23.7 -1.4 13 1-13 11-23 (197)
353 1g6h_A High-affinity branched- 46.5 2.6 8.9E-05 25.0 -0.9 14 1-14 44-57 (257)
354 3kta_A Chromosome segregation 46.4 2.9 9.9E-05 22.9 -0.7 10 1-10 37-46 (182)
355 2jeo_A Uridine-cytidine kinase 46.4 2 6.9E-05 25.0 -1.4 12 1-12 36-47 (245)
356 2pze_A Cystic fibrosis transme 46.4 2.6 8.9E-05 24.5 -0.9 14 1-14 45-58 (229)
357 2d4a_B Malate dehydrogenase; a 46.2 48 0.0016 20.1 4.8 44 39-83 64-117 (308)
358 1mv5_A LMRA, multidrug resista 45.9 2.7 9.2E-05 24.7 -0.9 12 1-12 39-50 (243)
359 1b0u_A Histidine permease; ABC 45.8 2.7 9.2E-05 25.0 -0.9 14 1-14 43-56 (262)
360 5nul_A Flavodoxin; electron tr 45.8 21 0.00073 18.4 2.8 43 39-82 42-86 (138)
361 3h9d_A ATG8, microtubule-assoc 45.8 24 0.00083 18.6 2.9 25 56-80 12-36 (119)
362 3hhp_A Malate dehydrogenase; M 45.7 44 0.0015 20.5 4.5 45 38-83 65-119 (312)
363 1z6g_A Guanylate kinase; struc 45.7 2.1 7.1E-05 24.6 -1.4 12 1-12 34-45 (218)
364 3sop_A Neuronal-specific septi 45.6 2.1 7.3E-05 25.6 -1.4 11 1-11 13-23 (270)
365 1nij_A Hypothetical protein YJ 45.5 2.4 8.1E-05 25.9 -1.2 13 1-13 15-27 (318)
366 3m95_A Autophagy related prote 45.4 25 0.00084 18.8 2.9 25 56-80 17-41 (125)
367 1ji0_A ABC transporter; ATP bi 45.4 2.8 9.4E-05 24.6 -0.9 14 1-14 43-56 (240)
368 1kht_A Adenylate kinase; phosp 45.3 2.1 7.1E-05 23.4 -1.4 12 1-12 14-25 (192)
369 3k1y_A Oxidoreductase; structu 45.1 15 0.00051 20.8 2.2 46 37-82 80-125 (191)
370 2rhm_A Putative kinase; P-loop 45.0 2.1 7.3E-05 23.5 -1.4 12 1-12 16-27 (193)
371 1sgw_A Putative ABC transporte 45.0 2.8 9.6E-05 24.3 -0.9 14 1-14 46-59 (214)
372 2ff7_A Alpha-hemolysin translo 45.0 2.8 9.7E-05 24.7 -0.9 16 1-16 46-61 (247)
373 2w0m_A SSO2452; RECA, SSPF, un 44.6 2.2 7.6E-05 24.0 -1.4 12 1-12 34-45 (235)
374 2olj_A Amino acid ABC transpor 44.4 2.9 0.0001 25.0 -0.9 14 1-14 61-74 (263)
375 3tl2_A Malate dehydrogenase; c 44.3 47 0.0016 20.4 4.4 45 38-83 74-128 (315)
376 1gtv_A TMK, thymidylate kinase 44.3 1.4 4.8E-05 24.7 -2.2 12 1-12 11-22 (214)
377 2ewd_A Lactate dehydrogenase,; 44.1 51 0.0018 19.9 4.8 43 40-83 70-122 (317)
378 2d2e_A SUFC protein; ABC-ATPas 44.1 3 0.0001 24.6 -0.9 12 1-12 40-51 (250)
379 3uie_A Adenylyl-sulfate kinase 44.0 2.3 7.8E-05 23.9 -1.4 12 1-12 36-47 (200)
380 2if2_A Dephospho-COA kinase; a 43.9 2.3 7.8E-05 23.7 -1.4 12 1-12 12-23 (204)
381 3gfo_A Cobalt import ATP-bindi 43.8 3 0.0001 25.1 -0.9 14 1-14 45-58 (275)
382 1knq_A Gluconate kinase; ALFA/ 43.7 2.3 7.7E-05 23.2 -1.4 11 1-11 19-29 (175)
383 1s96_A Guanylate kinase, GMP k 43.7 2.3 7.9E-05 24.6 -1.4 13 1-13 27-39 (219)
384 2bbw_A Adenylate kinase 4, AK4 43.7 2.4 8.1E-05 24.6 -1.4 11 1-11 38-48 (246)
385 3b6i_A Flavoprotein WRBA; flav 43.7 35 0.0012 18.7 3.6 33 37-69 63-95 (198)
386 1vpl_A ABC transporter, ATP-bi 43.6 3.1 0.0001 24.8 -0.9 14 1-14 52-65 (256)
387 2qor_A Guanylate kinase; phosp 43.6 2.3 7.9E-05 23.9 -1.4 12 1-12 23-34 (204)
388 3fkq_A NTRC-like two-domain pr 43.5 48 0.0017 20.5 4.5 50 18-70 259-308 (373)
389 4g1u_C Hemin import ATP-bindin 43.4 3.1 0.0001 24.9 -0.9 12 1-12 48-59 (266)
390 3gfs_A FMN-dependent NADPH-azo 43.4 6.4 0.00022 21.5 0.4 45 38-82 59-103 (174)
391 3u5c_H RP30, RP40, 40S ribosom 43.3 47 0.0016 19.2 5.2 38 44-82 56-94 (190)
392 3cm0_A Adenylate kinase; ATP-b 43.1 2.3 8E-05 23.3 -1.4 11 1-11 15-25 (186)
393 2zu0_C Probable ATP-dependent 43.1 3.1 0.00011 24.8 -0.9 13 1-13 57-69 (267)
394 2bog_X Endoglucanase E-2; hydr 43.0 28 0.00094 21.4 3.2 37 44-81 67-113 (286)
395 1u94_A RECA protein, recombina 43.0 9.1 0.00031 23.9 1.2 28 1-28 74-101 (356)
396 3h75_A Periplasmic sugar-bindi 43.0 53 0.0018 19.7 5.2 57 18-83 34-94 (350)
397 2qi9_C Vitamin B12 import ATP- 42.8 3.2 0.00011 24.6 -0.9 13 1-13 37-49 (249)
398 2yz2_A Putative ABC transporte 42.7 3.2 0.00011 24.7 -0.9 14 1-14 44-57 (266)
399 2ghi_A Transport protein; mult 42.7 3.2 0.00011 24.6 -0.9 12 1-12 57-68 (260)
400 2pcq_A Putative dihydrodipicol 42.7 19 0.00064 21.7 2.4 36 41-80 87-123 (283)
401 2ihy_A ABC transporter, ATP-bi 42.7 3.2 0.00011 25.0 -0.9 14 1-14 58-71 (279)
402 3nep_X Malate dehydrogenase; h 42.6 40 0.0014 20.7 3.9 45 38-83 65-119 (314)
403 2pbr_A DTMP kinase, thymidylat 42.4 2.4 8.3E-05 23.2 -1.4 12 1-12 11-22 (195)
404 3gvi_A Malate dehydrogenase; N 42.4 59 0.002 20.1 4.8 45 38-83 71-125 (324)
405 1tev_A UMP-CMP kinase; ploop, 42.4 2.5 8.5E-05 23.2 -1.4 12 1-12 14-25 (196)
406 2cvh_A DNA repair and recombin 42.3 2.5 8.6E-05 23.7 -1.4 12 1-12 31-42 (220)
407 3tau_A Guanylate kinase, GMP k 42.1 2.5 8.6E-05 23.9 -1.4 13 1-13 19-31 (208)
408 1jjv_A Dephospho-COA kinase; P 42.1 2.5 8.6E-05 23.7 -1.4 12 1-12 13-24 (206)
409 2a5l_A Trp repressor binding p 42.0 30 0.001 19.0 3.2 34 37-70 66-99 (200)
410 2wwf_A Thymidilate kinase, put 41.9 2.6 8.8E-05 23.6 -1.4 12 1-12 21-32 (212)
411 3huu_A Transcription regulator 41.8 40 0.0014 19.7 3.8 57 17-83 56-114 (305)
412 2plr_A DTMP kinase, probable t 41.6 2.6 9E-05 23.4 -1.4 12 1-12 15-26 (213)
413 3vaa_A Shikimate kinase, SK; s 41.6 2.6 8.8E-05 23.6 -1.4 11 1-11 36-46 (199)
414 2ixe_A Antigen peptide transpo 41.6 3.4 0.00012 24.7 -0.9 14 1-14 56-69 (271)
415 1rz3_A Hypothetical protein rb 41.5 2.6 9E-05 23.7 -1.4 11 1-11 33-43 (201)
416 3s5o_A 4-hydroxy-2-oxoglutarat 41.2 54 0.0019 19.9 4.4 38 41-80 108-147 (307)
417 1ldn_A L-lactate dehydrogenase 41.0 60 0.002 19.7 4.6 44 39-83 71-124 (316)
418 2vli_A Antibiotic resistance p 40.9 2.6 9E-05 22.9 -1.4 12 1-12 16-27 (183)
419 3bul_A Methionine synthase; tr 40.9 79 0.0027 21.4 5.3 38 42-82 149-186 (579)
420 3h4x_A Phosphatidylinositol-sp 40.8 7.3 0.00025 24.5 0.5 26 6-33 48-73 (339)
421 1cke_A CK, MSSA, protein (cyti 40.8 2.8 9.4E-05 23.8 -1.4 12 1-12 16-27 (227)
422 2q9u_A A-type flavoprotein; fl 40.6 32 0.0011 21.4 3.4 44 39-82 304-348 (414)
423 4ido_A Atlastin-1; GTPase, GTP 40.6 8.5 0.00029 25.2 0.8 13 18-30 139-151 (457)
424 2nq2_C Hypothetical ABC transp 40.5 3.6 0.00012 24.3 -0.9 13 1-13 42-54 (253)
425 2pjz_A Hypothetical protein ST 40.4 3.7 0.00013 24.5 -0.9 14 1-14 41-54 (263)
426 2v54_A DTMP kinase, thymidylat 40.0 2.9 9.8E-05 23.2 -1.4 13 1-13 15-27 (204)
427 2eyu_A Twitching motility prot 39.9 3.9 0.00013 24.3 -0.8 12 1-12 36-47 (261)
428 2yvu_A Probable adenylyl-sulfa 39.8 2.9 9.8E-05 23.0 -1.4 12 1-12 24-35 (186)
429 2pez_A Bifunctional 3'-phospho 39.8 2.9 9.8E-05 22.9 -1.4 12 1-12 16-27 (179)
430 4es1_A BH0342 protein; ferredo 39.7 39 0.0013 17.2 3.7 11 45-55 6-16 (100)
431 3trf_A Shikimate kinase, SK; a 39.7 2.9 9.9E-05 22.9 -1.4 12 1-12 16-27 (185)
432 2hmc_A AGR_L_411P, dihydrodipi 39.7 34 0.0012 21.3 3.3 39 41-80 117-156 (344)
433 4ag6_A VIRB4 ATPase, type IV s 39.5 2 6.8E-05 26.8 -2.2 28 1-28 46-73 (392)
434 3aez_A Pantothenate kinase; tr 39.5 3 0.0001 25.5 -1.4 12 1-12 101-112 (312)
435 1n0w_A DNA repair protein RAD5 39.4 3 0.0001 23.8 -1.4 12 1-12 35-46 (243)
436 3ec2_A DNA replication protein 39.2 3 0.0001 22.8 -1.4 12 1-12 49-60 (180)
437 3isy_A Bsupi, intracellular pr 39.2 21 0.00071 18.9 2.0 37 3-42 31-67 (120)
438 1p5z_B DCK, deoxycytidine kina 39.2 4.1 0.00014 23.9 -0.8 13 1-13 35-47 (263)
439 2pt5_A Shikimate kinase, SK; a 39.0 2.9 0.0001 22.4 -1.4 12 1-12 11-22 (168)
440 3fvq_A Fe(3+) IONS import ATP- 39.0 4 0.00014 25.7 -0.9 14 1-14 41-54 (359)
441 1nn5_A Similar to deoxythymidy 39.0 3 0.0001 23.3 -1.4 12 1-12 20-31 (215)
442 3ney_A 55 kDa erythrocyte memb 38.9 3 0.0001 23.9 -1.4 12 1-12 30-41 (197)
443 2i3b_A HCR-ntpase, human cance 38.8 3 0.0001 23.6 -1.4 10 1-10 12-21 (189)
444 1rli_A Trp repressor binding p 38.8 33 0.0011 18.5 3.0 32 38-69 67-98 (184)
445 2i0x_A Hypothetical protein PF 38.8 30 0.001 16.9 2.5 9 46-54 3-11 (85)
446 1nlf_A Regulatory protein REPA 38.7 3.2 0.00011 24.6 -1.4 12 1-12 41-52 (279)
447 2f1r_A Molybdopterin-guanine d 38.7 1.4 4.9E-05 24.6 -2.7 12 1-12 13-24 (171)
448 1z47_A CYSA, putative ABC-tran 38.7 4.1 0.00014 25.6 -0.9 14 1-14 52-65 (355)
449 1jr3_A DNA polymerase III subu 38.5 17 0.00057 22.1 1.8 12 1-12 49-60 (373)
450 2zqz_A L-LDH, L-lactate dehydr 38.5 53 0.0018 20.2 4.0 44 39-83 73-126 (326)
451 1f2t_A RAD50 ABC-ATPase; DNA d 38.5 4.5 0.00015 21.8 -0.7 9 1-9 34-42 (149)
452 4hs4_A Chromate reductase; tri 38.4 26 0.00087 19.9 2.5 46 37-82 68-116 (199)
453 2qt1_A Nicotinamide riboside k 38.4 3.2 0.00011 23.3 -1.4 13 1-13 32-44 (207)
454 2zr9_A Protein RECA, recombina 38.2 9.4 0.00032 23.7 0.7 28 1-28 72-99 (349)
455 4f1h_A Tyrosyl-DNA phosphodies 37.9 50 0.0017 18.0 3.9 21 61-82 131-151 (250)
456 3sf4_D Protein inscuteable hom 37.7 30 0.001 15.3 2.6 14 59-72 9-22 (52)
457 1xwi_A SKD1 protein; VPS4B, AA 37.7 61 0.0021 19.6 4.2 13 1-13 56-68 (322)
458 3h5d_A DHDPS, dihydrodipicolin 37.6 48 0.0017 20.3 3.7 38 42-81 102-140 (311)
459 1qf9_A UMP/CMP kinase, protein 37.6 3.3 0.00011 22.6 -1.4 12 1-12 17-28 (194)
460 2it1_A 362AA long hypothetical 37.6 4.4 0.00015 25.5 -0.9 14 1-14 40-53 (362)
461 1g29_1 MALK, maltose transport 37.5 4.4 0.00015 25.6 -0.9 14 1-14 40-53 (372)
462 2c95_A Adenylate kinase 1; tra 37.5 3.3 0.00011 22.8 -1.4 11 1-11 20-30 (196)
463 3jy6_A Transcriptional regulat 37.5 58 0.002 18.6 5.2 56 17-83 36-93 (276)
464 2yyz_A Sugar ABC transporter, 37.4 4.4 0.00015 25.5 -0.9 14 1-14 40-53 (359)
465 1zuh_A Shikimate kinase; alpha 37.3 3.3 0.00011 22.3 -1.4 12 1-12 18-29 (168)
466 2bwj_A Adenylate kinase 5; pho 37.3 3.3 0.00011 22.8 -1.4 12 1-12 23-34 (199)
467 3hxl_A Uncharacterized protein 37.3 80 0.0027 20.6 4.8 26 47-72 202-227 (446)
468 3skv_A SSFX3; jelly roll, GDSL 37.2 35 0.0012 21.6 3.2 40 42-82 244-290 (385)
469 1e6c_A Shikimate kinase; phosp 37.2 3.3 0.00011 22.3 -1.4 12 1-12 13-24 (173)
470 7mdh_A Protein (malate dehydro 37.1 80 0.0027 20.1 4.9 46 38-83 104-159 (375)
471 1v43_A Sugar-binding transport 37.1 4.5 0.00015 25.5 -0.9 14 1-14 48-61 (372)
472 1cr0_A DNA primase/helicase; R 37.0 3.5 0.00012 24.5 -1.4 12 1-12 46-57 (296)
473 3h5t_A Transcriptional regulat 37.0 69 0.0024 19.3 4.4 32 18-49 101-135 (366)
474 1sq5_A Pantothenate kinase; P- 36.9 3.6 0.00012 25.0 -1.4 11 1-11 91-101 (308)
475 1xp8_A RECA protein, recombina 36.9 10 0.00035 23.8 0.7 28 1-28 85-112 (366)
476 1y6j_A L-lactate dehydrogenase 36.8 72 0.0024 19.5 4.6 43 40-83 72-124 (318)
477 1via_A Shikimate kinase; struc 36.6 3.4 0.00012 22.5 -1.4 12 1-12 15-26 (175)
478 3fb4_A Adenylate kinase; psych 36.5 3.5 0.00012 23.2 -1.4 12 1-12 11-22 (216)
479 3iij_A Coilin-interacting nucl 36.4 3.5 0.00012 22.5 -1.4 12 1-12 22-33 (180)
480 2bbs_A Cystic fibrosis transme 36.4 4.7 0.00016 24.5 -0.9 13 1-13 75-87 (290)
481 2i1q_A DNA repair and recombin 36.4 34 0.0012 20.6 3.0 13 1-13 109-121 (322)
482 2kjq_A DNAA-related protein; s 36.3 5.2 0.00018 21.6 -0.7 12 1-12 47-58 (149)
483 3tqc_A Pantothenate kinase; bi 36.3 3.7 0.00013 25.4 -1.4 11 1-11 103-113 (321)
484 3hr8_A Protein RECA; alpha and 36.2 13 0.00044 23.3 1.1 28 1-28 72-99 (356)
485 3u7r_A NADPH-dependent FMN red 36.2 35 0.0012 19.3 2.8 46 37-82 62-111 (190)
486 1ukz_A Uridylate kinase; trans 36.1 3.6 0.00012 22.9 -1.4 11 1-11 26-36 (203)
487 3fni_A Putative diflavin flavo 36.0 53 0.0018 17.7 4.4 61 20-83 35-95 (159)
488 2qsj_A DNA-binding response re 36.0 46 0.0016 17.0 3.3 36 42-82 50-85 (154)
489 2hjr_A Malate dehydrogenase; m 36.0 75 0.0026 19.5 4.8 43 40-83 80-132 (328)
490 3rlf_A Maltose/maltodextrin im 36.0 4.8 0.00017 25.6 -0.9 14 1-14 40-53 (381)
491 4ebb_A Dipeptidyl peptidase 2; 35.9 53 0.0018 21.3 3.9 30 53-82 104-134 (472)
492 1zd8_A GTP:AMP phosphotransfer 35.8 3.7 0.00013 23.4 -1.4 11 1-11 18-28 (227)
493 2w9x_A AXE2A, CJCE2B, putative 35.8 47 0.0016 20.5 3.5 40 42-82 236-293 (366)
494 2ius_A DNA translocase FTSK; n 35.8 7.8 0.00027 25.7 0.0 29 1-29 178-210 (512)
495 2dr3_A UPF0273 protein PH0284; 35.8 3.7 0.00013 23.4 -1.4 12 1-12 34-45 (247)
496 1jbk_A CLPB protein; beta barr 35.8 3.6 0.00012 22.1 -1.4 13 1-13 54-66 (195)
497 2kpo_A Rossmann 2X2 fold prote 35.6 32 0.0011 17.0 2.2 24 59-83 36-60 (110)
498 2cdn_A Adenylate kinase; phosp 35.6 3.7 0.00013 22.9 -1.4 12 1-12 31-42 (201)
499 5mdh_A Malate dehydrogenase; o 35.5 79 0.0027 19.5 4.6 45 39-83 76-130 (333)
500 1a7j_A Phosphoribulokinase; tr 35.5 4.1 0.00014 24.6 -1.2 12 1-12 16-27 (290)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.96 E-value=3e-30 Score=152.18 Aligned_cols=83 Identities=33% Similarity=0.621 Sum_probs=79.4
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+|||||+.||..+.|. ..++++||||+|||+|+.+++.|+++++++++|||+++++||++
T Consensus 24 VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~ 103 (216)
T 4dkx_A 24 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQ 103 (216)
T ss_dssp SSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHT
T ss_pred cCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHH
Confidence 6999999999999886 67899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
+..|++++++..++++|++||||
T Consensus 104 i~~~~~~i~~~~~~~~piilVgN 126 (216)
T 4dkx_A 104 TTKWIDDVRTERGSDVIIMLVGN 126 (216)
T ss_dssp HHHHHHHHHHHHTTSSEEEEEEE
T ss_pred HHHHHHHHHHhcCCCCeEEEEee
Confidence 99999999988878999999998
No 2
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.90 E-value=9e-24 Score=120.27 Aligned_cols=83 Identities=69% Similarity=1.064 Sum_probs=54.5
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+|||||+.++..+.+. ..+.+++|||+|++++..++..+++++|++++|||+++++||+.
T Consensus 19 ~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~ 98 (183)
T 2fu5_C 19 VGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 98 (183)
T ss_dssp C----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHH
T ss_pred CCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHH
Confidence 7999999999877654 44789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
+..|++++.+...+++|++||||
T Consensus 99 ~~~~~~~i~~~~~~~~piilv~n 121 (183)
T 2fu5_C 99 IRNWIRNIEEHASADVEKMILGN 121 (183)
T ss_dssp HHHHHHHHHHHSCTTCEEEEEEE
T ss_pred HHHHHHHHHHhcCCCCCEEEEEE
Confidence 99999999887667899999997
No 3
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.90 E-value=5e-24 Score=124.75 Aligned_cols=82 Identities=18% Similarity=0.494 Sum_probs=75.8
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH-
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN- 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~- 60 (83)
+|||||+.++..+.|. ..+.+++|||+|+++|..++..++++++++|+|||+++++||++
T Consensus 38 vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~ 117 (214)
T 3q3j_B 38 CGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSA 117 (214)
T ss_dssp SSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHH
T ss_pred CCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHH
Confidence 7999999999887765 45789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
+..|++.+.+.. +++|++||||
T Consensus 118 ~~~~~~~i~~~~-~~~piilv~n 139 (214)
T 3q3j_B 118 LKKWRTEILDYC-PSTRVLLIGC 139 (214)
T ss_dssp HTHHHHHHHHHC-TTSEEEEEEE
T ss_pred HHHHHHHHHHhC-CCCCEEEEEE
Confidence 689999998876 6899999997
No 4
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.90 E-value=8.5e-24 Score=122.62 Aligned_cols=83 Identities=41% Similarity=0.752 Sum_probs=75.8
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+|||||+.++..+.|. ..+.+++|||+|+++|..++..++++++++|+|||++++++|++
T Consensus 40 vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~ 119 (201)
T 2hup_A 40 VGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLS 119 (201)
T ss_dssp SSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHT
T ss_pred CCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHH
Confidence 6999999999877664 34789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
+..|++++.+...+++|++||||
T Consensus 120 ~~~~~~~i~~~~~~~~piilv~N 142 (201)
T 2hup_A 120 VPHWIEDVRKYAGSNIVQLLIGN 142 (201)
T ss_dssp HHHHHHHHHHHSCTTCEEEEEEE
T ss_pred HHHHHHHHHHhcCCCCCEEEEEE
Confidence 99999999887767899999997
No 5
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=1.7e-23 Score=121.77 Aligned_cols=83 Identities=43% Similarity=0.739 Sum_probs=75.8
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+|||||+.++..+.+. ..+.+++|||+|+++|..++..++++++++++|||++++++|+.
T Consensus 37 vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~ 116 (201)
T 2ew1_A 37 VGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRC 116 (201)
T ss_dssp SSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHT
T ss_pred CCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHH
Confidence 6999999998776553 35789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
+..|++++......++|+++|||
T Consensus 117 ~~~~~~~i~~~~~~~~piilv~N 139 (201)
T 2ew1_A 117 LPEWLREIEQYASNKVITVLVGN 139 (201)
T ss_dssp HHHHHHHHHHHSCTTCEEEEEEE
T ss_pred HHHHHHHHHHhcCCCCCEEEEEE
Confidence 99999999887767899999997
No 6
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.89 E-value=1.9e-23 Score=119.45 Aligned_cols=82 Identities=21% Similarity=0.515 Sum_probs=74.7
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 61 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~ 61 (83)
+|||||+.++..+.|. ..+.+++|||+|+++|..+++.++++++++++|||+++++||+++
T Consensus 18 vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~ 97 (184)
T 1m7b_A 18 CGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSV 97 (184)
T ss_dssp SSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHH
T ss_pred CCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHH
Confidence 6999999999877654 457899999999999999999999999999999999999999999
Q ss_pred -HHHHHHHHHhcCCCceEEEEeC
Q psy16649 62 -KNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 62 -~~w~~~~~~~~~~~~piilvgN 83 (83)
+.|++++++.. +++|++||||
T Consensus 98 ~~~~~~~i~~~~-~~~piilv~n 119 (184)
T 1m7b_A 98 LKKWKGEIQEFC-PNTKMLLVGC 119 (184)
T ss_dssp HHTHHHHHHHHC-TTCEEEEEEE
T ss_pred HHHHHHHHHHHC-CCCCEEEEEE
Confidence 78999998776 6899999997
No 7
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.89 E-value=4.4e-23 Score=115.68 Aligned_cols=83 Identities=41% Similarity=0.755 Sum_probs=76.0
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+||||++.++..+.+. ..+.+++|||+|++++..++..+++++|++++|||++++++|+.
T Consensus 17 ~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~ 96 (170)
T 1r2q_A 17 VGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFAR 96 (170)
T ss_dssp SSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHH
Confidence 6999999998876553 46789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
+..|+.++.+...+++|+++|||
T Consensus 97 ~~~~~~~~~~~~~~~~~iilv~n 119 (170)
T 1r2q_A 97 AKNWVKELQRQASPNIVIALSGN 119 (170)
T ss_dssp HHHHHHHHHHHSCTTCEEEEEEE
T ss_pred HHHHHHHHHHhcCCCCcEEEEEE
Confidence 99999999887667999999997
No 8
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.89 E-value=5.1e-23 Score=115.41 Aligned_cols=83 Identities=35% Similarity=0.672 Sum_probs=75.7
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+||||++.++..+.+. ..+.+.+|||+|++++..++..+++++|++++|||++++++|++
T Consensus 14 ~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~ 93 (170)
T 1ek0_A 14 VGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIK 93 (170)
T ss_dssp SSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHH
T ss_pred CCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHHHHH
Confidence 6999999988776653 45689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
+..|++++.+...+++|+++|||
T Consensus 94 ~~~~~~~~~~~~~~~~piilv~n 116 (170)
T 1ek0_A 94 ARHWVKELHEQASKDIIIALVGN 116 (170)
T ss_dssp HHHHHHHHHHHSCTTCEEEEEEE
T ss_pred HHHHHHHHHHhcCCCCcEEEEEE
Confidence 99999999887767899999987
No 9
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.89 E-value=3.7e-23 Score=120.55 Aligned_cols=82 Identities=21% Similarity=0.515 Sum_probs=74.7
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 61 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~ 61 (83)
+|||||+.++..+.|. ..+.+++|||+|+++|..++..++++++++|+|||+++++||+++
T Consensus 39 vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~ 118 (205)
T 1gwn_A 39 CGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSV 118 (205)
T ss_dssp SSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHH
T ss_pred CCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHH
Confidence 7999999999877653 457899999999999999999999999999999999999999999
Q ss_pred -HHHHHHHHHhcCCCceEEEEeC
Q psy16649 62 -KNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 62 -~~w~~~~~~~~~~~~piilvgN 83 (83)
+.|++++++.. +++|++||||
T Consensus 119 ~~~~~~~i~~~~-~~~piilv~n 140 (205)
T 1gwn_A 119 LKKWKGEIQEFC-PNTKMLLVGC 140 (205)
T ss_dssp HHTHHHHHHHHC-TTCEEEEEEE
T ss_pred HHHHHHHHHHHC-CCCCEEEEEe
Confidence 78999998876 6899999997
No 10
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.89 E-value=4.2e-23 Score=118.55 Aligned_cols=83 Identities=42% Similarity=0.773 Sum_probs=76.1
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+|||||+.++..+.+. ..+.+++|||+|++++..++..++++++++++|||++++++|+.
T Consensus 32 ~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~ 111 (191)
T 2a5j_A 32 VGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNH 111 (191)
T ss_dssp SSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHT
T ss_pred CCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHH
Confidence 6999999998876654 45789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
+..|++++.....+++|+++|||
T Consensus 112 ~~~~l~~i~~~~~~~~piilv~n 134 (191)
T 2a5j_A 112 LTSWLEDARQHSSSNMVIMLIGN 134 (191)
T ss_dssp HHHHHHHHHHHSCTTCEEEEEEE
T ss_pred HHHHHHHHHHhcCCCCCEEEEEE
Confidence 99999999887767899999997
No 11
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.89 E-value=1e-22 Score=115.48 Aligned_cols=83 Identities=33% Similarity=0.683 Sum_probs=75.9
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+|||||+.++..+.+. ..+.+++|||+|++++..++..+++++|++++|||++++++|+.
T Consensus 23 ~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~ 102 (181)
T 2efe_B 23 AGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFER 102 (181)
T ss_dssp SCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHH
Confidence 6999999998776553 45789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
+..|++++.+...+++|+++|+|
T Consensus 103 ~~~~~~~~~~~~~~~~p~i~v~n 125 (181)
T 2efe_B 103 AKKWVQELQAQGNPNMVMALAGN 125 (181)
T ss_dssp HHHHHHHHHHHSCTTCEEEEEEE
T ss_pred HHHHHHHHHHhcCCCCcEEEEEE
Confidence 99999999888767899999997
No 12
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.89 E-value=6e-23 Score=118.04 Aligned_cols=82 Identities=27% Similarity=0.499 Sum_probs=74.9
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 61 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~ 61 (83)
+|||||+.++..+.+. ..+.+++|||+|+++|..++..+++++|++++|||+++++||+++
T Consensus 34 ~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~ 113 (194)
T 3reg_A 34 VGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNI 113 (194)
T ss_dssp SSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHH
T ss_pred CCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHH
Confidence 6999999999888764 567889999999999999999999999999999999999999998
Q ss_pred -HHHHHHHHHhcCCCceEEEEeC
Q psy16649 62 -KNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 62 -~~w~~~~~~~~~~~~piilvgN 83 (83)
..|++.+.... +++|++||||
T Consensus 114 ~~~~~~~~~~~~-~~~p~ilv~n 135 (194)
T 3reg_A 114 STKWEPEIKHYI-DTAKTVLVGL 135 (194)
T ss_dssp HHTHHHHHHHHC-TTSEEEEEEE
T ss_pred HHHHHHHHHHhC-CCCCEEEEEE
Confidence 68999988765 6899999997
No 13
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.89 E-value=3.8e-23 Score=118.67 Aligned_cols=82 Identities=24% Similarity=0.444 Sum_probs=69.8
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 61 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~ 61 (83)
+|||||+.++..+.|. ..+.+++|||+|+++++.+ ..++++++++++|||+++++||+++
T Consensus 32 vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ilv~d~~~~~s~~~~ 110 (187)
T 3c5c_A 32 AGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSS 110 (187)
T ss_dssp SSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEEEEEETTCHHHHHHH
T ss_pred CcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEEEEEECCCHHHHHHH
Confidence 6999999998877654 4578999999999999886 6799999999999999999999999
Q ss_pred HHHHHHHHHhc---CCCceEEEEeC
Q psy16649 62 KNWIRNIEENA---SANVEKMLLGN 83 (83)
Q Consensus 62 ~~w~~~~~~~~---~~~~piilvgN 83 (83)
..|++++.+.. .+++|++||||
T Consensus 111 ~~~~~~i~~~~~~~~~~~piilv~n 135 (187)
T 3c5c_A 111 SSYLELLALHAKETQRSIPALLLGN 135 (187)
T ss_dssp HHHHHHHHHHHHHHCCCCCEEEEEE
T ss_pred HHHHHHHHHHhhccCCCCCEEEEEE
Confidence 99999998764 26899999997
No 14
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.89 E-value=6.1e-23 Score=117.75 Aligned_cols=83 Identities=47% Similarity=0.875 Sum_probs=76.7
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+|||||+.++..+.+. ..+.+.+|||+|++++..++..+++++|++++|||++++++|+.
T Consensus 27 ~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~ 106 (196)
T 3tkl_A 27 VGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNN 106 (196)
T ss_dssp SSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHT
T ss_pred CCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHH
Confidence 6999999999877664 45789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
+..|++.+......++|+++|||
T Consensus 107 ~~~~~~~i~~~~~~~~p~ilv~n 129 (196)
T 3tkl_A 107 VKQWLQEIDRYASENVNKLLVGN 129 (196)
T ss_dssp HHHHHHHHHHHSCTTCEEEEEEE
T ss_pred HHHHHHHHHHhcCCCCCEEEEEE
Confidence 99999999888777899999997
No 15
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.88 E-value=6.2e-23 Score=116.93 Aligned_cols=83 Identities=40% Similarity=0.720 Sum_probs=75.8
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+||||++.++..+.+. ..+.+++|||+|++++..++..+++++|++++|||++++++|+.
T Consensus 21 ~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~ 100 (186)
T 2bme_A 21 TGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNA 100 (186)
T ss_dssp SSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHT
T ss_pred CCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHH
Confidence 6999999998876654 34789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
+..|++++......++|+++|||
T Consensus 101 ~~~~~~~~~~~~~~~~piilv~n 123 (186)
T 2bme_A 101 LTNWLTDARMLASQNIVIILCGN 123 (186)
T ss_dssp HHHHHHHHHHHSCTTCEEEEEEE
T ss_pred HHHHHHHHHHhcCCCCcEEEEEE
Confidence 99999999887667899999997
No 16
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.88 E-value=6.4e-23 Score=120.43 Aligned_cols=83 Identities=41% Similarity=0.745 Sum_probs=73.6
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+|||||+.++..+.+. ..+.+++|||+|+++|..++..++++++++|+|||++++++|+.
T Consensus 24 vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~ 103 (223)
T 3cpj_B 24 VGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYEN 103 (223)
T ss_dssp SSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHH
T ss_pred CCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHH
Confidence 6999999999877654 34789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
+..|++++......++|++||||
T Consensus 104 ~~~~l~~i~~~~~~~~piilv~n 126 (223)
T 3cpj_B 104 CNHWLSELRENADDNVAVGLIGN 126 (223)
T ss_dssp HHHHHHHHHHHCC--CEEEEEEC
T ss_pred HHHHHHHHHHhCCCCCeEEEEEE
Confidence 99999999887667899999998
No 17
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.88 E-value=1.3e-22 Score=113.83 Aligned_cols=83 Identities=33% Similarity=0.673 Sum_probs=76.0
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+||||++.++..+.+. ..+.+.+|||+|++++..++..+++++|++++|||++++++++.
T Consensus 17 ~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~ 96 (170)
T 1z0j_A 17 VGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFST 96 (170)
T ss_dssp SSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHH
Confidence 6999999998877653 45789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
+..|++.+.....+.+|+++|||
T Consensus 97 ~~~~~~~l~~~~~~~~~iilv~n 119 (170)
T 1z0j_A 97 LKNWVRELRQHGPPSIVVAIAGN 119 (170)
T ss_dssp HHHHHHHHHHHSCTTSEEEEEEE
T ss_pred HHHHHHHHHHhCCCCCcEEEEEE
Confidence 99999999887668899999997
No 18
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.88 E-value=3.7e-23 Score=116.21 Aligned_cols=83 Identities=35% Similarity=0.677 Sum_probs=68.2
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+||||++.++..+.+. ..+.+.+|||+|++++..++..++++++++++|||++++++|+.
T Consensus 17 ~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~ 96 (170)
T 1z08_A 17 VGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQK 96 (170)
T ss_dssp SCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHH
T ss_pred CCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHH
Confidence 6999999888766553 45689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
+..|++++.+..++++|+++|+|
T Consensus 97 ~~~~~~~~~~~~~~~~piilv~n 119 (170)
T 1z08_A 97 VKNWVKELRKMLGNEICLCIVGN 119 (170)
T ss_dssp HHHHHHHHHHHHGGGSEEEEEEE
T ss_pred HHHHHHHHHHhcCCCCeEEEEEE
Confidence 99999999887667899999997
No 19
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.88 E-value=3.6e-23 Score=120.36 Aligned_cols=82 Identities=26% Similarity=0.480 Sum_probs=72.8
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 61 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~ 61 (83)
+|||||+.++..+.|. ..+.+++|||+|+++|..++..+++++|++++|||++++++|+++
T Consensus 20 ~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~ 99 (212)
T 2j0v_A 20 VGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENV 99 (212)
T ss_dssp SSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHH
T ss_pred CCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHH
Confidence 6999999999877654 457999999999999999999999999999999999999999999
Q ss_pred H-HHHHHHHHhcCCCceEEEEeC
Q psy16649 62 K-NWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 62 ~-~w~~~~~~~~~~~~piilvgN 83 (83)
. .|++++.... +++|++||||
T Consensus 100 ~~~~~~~~~~~~-~~~piilv~n 121 (212)
T 2j0v_A 100 LKKWMPELRRFA-PNVPIVLVGT 121 (212)
T ss_dssp HHTHHHHHHHHC-TTCCEEEEEE
T ss_pred HHHHHHHHHHhC-CCCCEEEEEe
Confidence 7 8999998876 5899999997
No 20
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.88 E-value=9.9e-23 Score=118.05 Aligned_cols=83 Identities=42% Similarity=0.817 Sum_probs=75.8
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+|||||+.++..+.+. ..+.+.+|||+|++++..++..+++++|++++|||++++++|+.
T Consensus 19 ~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~ 98 (206)
T 2bcg_Y 19 VGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNG 98 (206)
T ss_dssp SSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHH
T ss_pred CCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHH
Confidence 6999999998766553 45789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
+..|++++.....+++|++||||
T Consensus 99 ~~~~~~~i~~~~~~~~piilv~n 121 (206)
T 2bcg_Y 99 VKMWLQEIDRYATSTVLKLLVGN 121 (206)
T ss_dssp HHHHHHHHHHHSCTTCEEEEEEE
T ss_pred HHHHHHHHHHhcCCCCCEEEEEE
Confidence 99999999887767899999997
No 21
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=1e-22 Score=117.10 Aligned_cols=83 Identities=33% Similarity=0.653 Sum_probs=76.0
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+|||||+.++..+.+. ..+.+.+|||+|++++..++..++++++++++|||++++++|+.
T Consensus 34 ~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~ 113 (192)
T 2fg5_A 34 VGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYT 113 (192)
T ss_dssp SSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHH
T ss_pred CCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHH
Confidence 6999999999876653 45689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
+..|++++.+...+++|+++|||
T Consensus 114 ~~~~~~~i~~~~~~~~piiiv~N 136 (192)
T 2fg5_A 114 LKKWVKELKEHGPENIVMAIAGN 136 (192)
T ss_dssp HHHHHHHHHHHSCTTCEEEEEEE
T ss_pred HHHHHHHHHHhCCCCCcEEEEEE
Confidence 99999999887767899999997
No 22
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.88 E-value=1.8e-22 Score=116.56 Aligned_cols=83 Identities=20% Similarity=0.421 Sum_probs=62.9
Q ss_pred CCcceeeeeeccC--ccc--------------------e--EEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChh
Q psy16649 1 SGENLCTLQIFRG--CFQ--------------------H--NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEK 56 (83)
Q Consensus 1 ~GKss~~~~~~~~--~~~--------------------~--~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 56 (83)
+|||||+.++..+ .+. . .+.+++|||+|++++..++..+++++|++++|||+++++
T Consensus 31 ~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 110 (208)
T 2yc2_C 31 VGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSME 110 (208)
T ss_dssp ------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHH
T ss_pred CCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHH
Confidence 6999999999887 543 2 788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcC---CCceEEEEeC
Q psy16649 57 SFDNIKNWIRNIEENAS---ANVEKMLLGN 83 (83)
Q Consensus 57 s~~~~~~w~~~~~~~~~---~~~piilvgN 83 (83)
+|+.+..|++++....+ .++|+++|||
T Consensus 111 s~~~~~~~~~~i~~~~~~~~~~~piilv~n 140 (208)
T 2yc2_C 111 SFESCKAWFELLKSARPDRERPLRAVLVAN 140 (208)
T ss_dssp HHHHHHHHHHHHHHHCSCTTSCCEEEEEEE
T ss_pred HHHHHHHHHHHHHHhhcccccCCcEEEEEE
Confidence 99999999999998875 6899999997
No 23
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.88 E-value=1.2e-22 Score=117.42 Aligned_cols=83 Identities=43% Similarity=0.773 Sum_probs=76.0
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+|||||+.++..+.+. ..+.+++|||+|++++..++..++++++++|+|||++++++|+.
T Consensus 19 ~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~ 98 (203)
T 1zbd_A 19 VGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNA 98 (203)
T ss_dssp SSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHH
T ss_pred CCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHH
Confidence 6999999998877653 46789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
+..|+.++......++|+++|||
T Consensus 99 ~~~~~~~i~~~~~~~~piilv~n 121 (203)
T 1zbd_A 99 VQDWSTQIKTYSWDNAQVLLVGN 121 (203)
T ss_dssp HHHHHHHHHHHSCSSCEEEEEEE
T ss_pred HHHHHHHHHHhcCCCCCEEEEEE
Confidence 99999999887767899999997
No 24
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.88 E-value=7.8e-23 Score=118.02 Aligned_cols=82 Identities=20% Similarity=0.439 Sum_probs=72.0
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 61 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~ 61 (83)
+|||||+.++..+.|. ..+.+++|||+|+++|..++..+++++|++++|||++++++|+++
T Consensus 31 ~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~ 110 (201)
T 2q3h_A 31 VGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNV 110 (201)
T ss_dssp SSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHH
T ss_pred CCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHH
Confidence 6999999998876654 457899999999999999999999999999999999999999999
Q ss_pred H-HHHHHHHHhcCCCceEEEEeC
Q psy16649 62 K-NWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 62 ~-~w~~~~~~~~~~~~piilvgN 83 (83)
. .|++++.... +++|++||||
T Consensus 111 ~~~~~~~~~~~~-~~~p~ilv~n 132 (201)
T 2q3h_A 111 SEKWVPEIRCHC-PKAPIILVGT 132 (201)
T ss_dssp HHTHHHHHHHHC-SSSCEEEEEE
T ss_pred HHHHHHHHHHhC-CCCCEEEEEE
Confidence 7 7999998876 5899999997
No 25
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=6.4e-23 Score=117.82 Aligned_cols=82 Identities=26% Similarity=0.514 Sum_probs=74.5
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 61 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~ 61 (83)
+||||++.++..+.|. ..+.+++|||+|+++|..++..+++++|++++|||+++++||+++
T Consensus 29 ~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~ 108 (194)
T 2atx_A 29 VGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNV 108 (194)
T ss_dssp SSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHH
T ss_pred CCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHH
Confidence 6999999999877654 457899999999999999999999999999999999999999999
Q ss_pred H-HHHHHHHHhcCCCceEEEEeC
Q psy16649 62 K-NWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 62 ~-~w~~~~~~~~~~~~piilvgN 83 (83)
. .|+.++.+.. +++|+++|||
T Consensus 109 ~~~~~~~~~~~~-~~~piilv~n 130 (194)
T 2atx_A 109 KEEWVPELKEYA-PNVPFLLIGT 130 (194)
T ss_dssp HHTHHHHHHHHS-TTCCEEEEEE
T ss_pred HHHHHHHHHHhC-CCCCEEEEEE
Confidence 7 8999998876 5899999997
No 26
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.88 E-value=1.9e-23 Score=129.28 Aligned_cols=82 Identities=12% Similarity=0.173 Sum_probs=64.0
Q ss_pred CCcceeeeeeccCccc------------------eEEEEEEEeCCCchhhhc---chhhhccCCcEEEEEEECCCh--hH
Q psy16649 1 SGENLCTLQIFRGCFQ------------------HNFHINYRDTAGQERFRT---ITTAYYRGAMGIMLVYDITNE--KS 57 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~------------------~~~~l~i~Dt~g~~~~~~---~~~~~~~~~~~~ilv~d~~~~--~s 57 (83)
+||||++.++..+.++ ..++|+||||+|||+|+. .++.||++++++|+|||++++ ++
T Consensus 10 vGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~~~~~ 89 (331)
T 3r7w_B 10 CGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFSTLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDEYINA 89 (331)
T ss_dssp SSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEECSSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSCTTHH
T ss_pred CCHHHHHHHHHcCCCCCccceecCeeeeeeEEEccEEEEEEEECCCchhccchhhhhhhhccCCCEEEEEEECCchHHHH
Confidence 6999999875543321 237899999999999974 479999999999999999998 44
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 58 FDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 58 ~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
++.+.+|++++.+.. +++|++|+||
T Consensus 90 ~~~l~~~l~~~~~~~-~~ipillvgN 114 (331)
T 3r7w_B 90 ITNLAMIIEYAYKVN-PSINIEVLIH 114 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCEEEEECC
T ss_pred HHHHHHHHHHHhhcC-CCCcEEEEEE
Confidence 444445566665554 6899999998
No 27
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.88 E-value=8.9e-23 Score=118.15 Aligned_cols=83 Identities=39% Similarity=0.731 Sum_probs=73.6
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+|||||+.++..+.+. ..+.+++|||+|++++..++..+++++|++|+|||++++++|+.
T Consensus 36 ~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~ 115 (200)
T 2o52_A 36 TGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNS 115 (200)
T ss_dssp SSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHT
T ss_pred CCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHH
Confidence 6999999998876654 34789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
+..|+.++.....+++|+++|||
T Consensus 116 ~~~~~~~~~~~~~~~~piilv~n 138 (200)
T 2o52_A 116 LAAWLTDARTLASPNIVVILCGN 138 (200)
T ss_dssp HHHHHHHHHHHTCTTCEEEEEEE
T ss_pred HHHHHHHHHHhcCCCCcEEEEEE
Confidence 99999999887767899999997
No 28
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.88 E-value=4.8e-23 Score=119.03 Aligned_cols=83 Identities=47% Similarity=0.875 Sum_probs=72.2
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+|||||+.++..+.+. ..+.+.+|||+|++++..++..+++++|++++|||++++++|+.
T Consensus 44 ~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~ 123 (199)
T 3l0i_B 44 VGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNN 123 (199)
T ss_dssp SCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHH
T ss_pred CCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHH
Confidence 7999999999987765 45789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
+..|++.+......++|++||||
T Consensus 124 ~~~~~~~i~~~~~~~~p~ilv~n 146 (199)
T 3l0i_B 124 VKQWLQEIDRYASENVNKLLVGN 146 (199)
T ss_dssp HHHHHHHHHSCC-CCSEEEEC-C
T ss_pred HHHHHHHHHHhccCCCCEEEEEE
Confidence 99999999877667899999998
No 29
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.88 E-value=5.9e-23 Score=118.77 Aligned_cols=83 Identities=12% Similarity=0.163 Sum_probs=71.8
Q ss_pred CCcceeeeeeccCcc--c------------------eEEEEEEEeCCCchhhhc-chhhhccCCcEEEEEEECCChhHHH
Q psy16649 1 SGENLCTLQIFRGCF--Q------------------HNFHINYRDTAGQERFRT-ITTAYYRGAMGIMLVYDITNEKSFD 59 (83)
Q Consensus 1 ~GKss~~~~~~~~~~--~------------------~~~~l~i~Dt~g~~~~~~-~~~~~~~~~~~~ilv~d~~~~~s~~ 59 (83)
+|||||+.++....+ . ..+++++|||+|++++.. +++.|+++++++|+|||+++++||+
T Consensus 34 vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~ 113 (195)
T 3cbq_A 34 VGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFS 113 (195)
T ss_dssp SSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHH
T ss_pred CCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHH
Confidence 799999999853221 1 568999999999998865 8899999999999999999999999
Q ss_pred HHHHHHHHHHHhcC-CCceEEEEeC
Q psy16649 60 NIKNWIRNIEENAS-ANVEKMLLGN 83 (83)
Q Consensus 60 ~~~~w~~~~~~~~~-~~~piilvgN 83 (83)
++..|+.++....+ .++|++||||
T Consensus 114 ~~~~~~~~i~~~~~~~~~piilv~n 138 (195)
T 3cbq_A 114 KVPETLLRLRAGRPHHDLPVILVGN 138 (195)
T ss_dssp THHHHHHHHHHHSTTSCCCEEEEEE
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEee
Confidence 99999999987653 5899999997
No 30
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.88 E-value=1.1e-22 Score=115.55 Aligned_cols=83 Identities=31% Similarity=0.526 Sum_probs=73.2
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 61 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~ 61 (83)
+|||||+.++..+.+. ..+.+++|||+|++++..++..++++++++++|||++++++|+.+
T Consensus 17 ~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~ 96 (181)
T 3t5g_A 17 VGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVI 96 (181)
T ss_dssp SSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHH
Confidence 6999999999876654 457899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc-CCCceEEEEeC
Q psy16649 62 KNWIRNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 62 ~~w~~~~~~~~-~~~~piilvgN 83 (83)
..|++++.+.. ..++|+++|||
T Consensus 97 ~~~~~~~~~~~~~~~~p~ilv~n 119 (181)
T 3t5g_A 97 KVIHGKLLDMVGKVQIPIMLVGN 119 (181)
T ss_dssp HHHHHHHHHHC----CCEEEEEE
T ss_pred HHHHHHHHHhcCCCCCCEEEEEE
Confidence 99999997764 35899999997
No 31
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.88 E-value=8.7e-23 Score=114.58 Aligned_cols=83 Identities=49% Similarity=0.887 Sum_probs=75.9
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+||||++.++..+.+. ..+.+.+|||+|++++..++..++++++++++|||++++++|+.
T Consensus 14 ~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~ 93 (170)
T 1g16_A 14 VGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTN 93 (170)
T ss_dssp SSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHT
T ss_pred CCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHH
Confidence 6999999998876653 35789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
+..|++.+.+...++.|+++|+|
T Consensus 94 ~~~~~~~i~~~~~~~~piilv~n 116 (170)
T 1g16_A 94 IKQWFKTVNEHANDEAQLLLVGN 116 (170)
T ss_dssp HHHHHHHHHHHSCTTCEEEEEEE
T ss_pred HHHHHHHHHHhcCCCCcEEEEEE
Confidence 99999999888767899999997
No 32
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.88 E-value=1.3e-22 Score=114.65 Aligned_cols=83 Identities=35% Similarity=0.687 Sum_probs=76.0
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+||||++.++..+.+. ..+.+.+|||+|++++..++..+++++|++++|||++++++++.
T Consensus 26 ~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~ 105 (179)
T 1z0f_A 26 VGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNH 105 (179)
T ss_dssp SSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHT
T ss_pred CCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHH
Confidence 6999999998876654 45789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
+..|++++.....+++|+++|+|
T Consensus 106 ~~~~~~~~~~~~~~~~piilv~n 128 (179)
T 1z0f_A 106 LSSWLTDARNLTNPNTVIILIGN 128 (179)
T ss_dssp HHHHHHHHHHHSCTTCEEEEEEE
T ss_pred HHHHHHHHHHhcCCCCcEEEEEE
Confidence 99999999887767899999997
No 33
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.88 E-value=1.8e-22 Score=114.28 Aligned_cols=82 Identities=43% Similarity=0.815 Sum_probs=74.1
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+|||||+.++..+.+. ..+.+.+|||+|++++..++..+++++|++++|||++++++|+.
T Consensus 20 ~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~ 99 (181)
T 3tw8_B 20 VGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVN 99 (181)
T ss_dssp SCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHH
T ss_pred CCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHH
Confidence 7999999999877654 44789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
+..|+.++.... +++|+++|||
T Consensus 100 ~~~~~~~~~~~~-~~~p~ilv~n 121 (181)
T 3tw8_B 100 VKRWLHEINQNC-DDVCRILVGN 121 (181)
T ss_dssp HHHHHHHHHHHC-TTSEEEEEEE
T ss_pred HHHHHHHHHHhC-CCCCEEEEEE
Confidence 999999998876 6899999997
No 34
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=1.1e-22 Score=115.35 Aligned_cols=83 Identities=46% Similarity=0.790 Sum_probs=67.9
Q ss_pred CCcceeeeeeccCccc---------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHH
Q psy16649 1 SGENLCTLQIFRGCFQ---------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFD 59 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~---------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~ 59 (83)
+|||||+.++..+.+. ..+.+++|||+|++++..++..+++++|++++|||++++++|+
T Consensus 21 ~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~ 100 (180)
T 2g6b_A 21 VGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFD 100 (180)
T ss_dssp SSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHH
T ss_pred CCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHH
Confidence 6999999998776652 3568999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 60 NIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 60 ~~~~w~~~~~~~~~~~~piilvgN 83 (83)
.+..|++++......++|+++|+|
T Consensus 101 ~~~~~~~~i~~~~~~~~piilv~n 124 (180)
T 2g6b_A 101 NIQAWLTEIHEYAQHDVALMLLGN 124 (180)
T ss_dssp THHHHHHHHHHHSCTTCEEEEEEE
T ss_pred HHHHHHHHHHHhCCCCCcEEEEEE
Confidence 999999999887767899999997
No 35
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.88 E-value=1.6e-22 Score=115.02 Aligned_cols=82 Identities=20% Similarity=0.449 Sum_probs=73.8
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 61 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~ 61 (83)
+|||||+.++..+.+. ..+.+++|||+|++++..++..+++++|++++|||++++++|+++
T Consensus 16 ~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~ 95 (186)
T 1mh1_A 16 VGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENV 95 (186)
T ss_dssp SSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHH
Confidence 6999999888766553 567899999999999999999999999999999999999999999
Q ss_pred H-HHHHHHHHhcCCCceEEEEeC
Q psy16649 62 K-NWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 62 ~-~w~~~~~~~~~~~~piilvgN 83 (83)
. .|+..+.+.. ++.|+++|||
T Consensus 96 ~~~~~~~~~~~~-~~~piilv~n 117 (186)
T 1mh1_A 96 RAKWYPEVRHHC-PNTPIILVGT 117 (186)
T ss_dssp HHTHHHHHHHHS-TTSCEEEEEE
T ss_pred HHHHHHHHHHhC-CCCCEEEEeE
Confidence 7 7999998876 4899999997
No 36
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.88 E-value=8.2e-23 Score=117.60 Aligned_cols=83 Identities=42% Similarity=0.759 Sum_probs=73.7
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+|||||+.++..+.+. ..+.+++|||+|++++..++..+++++|++|+|||++++++|+.
T Consensus 37 ~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~ 116 (192)
T 2il1_A 37 VGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDD 116 (192)
T ss_dssp SSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHT
T ss_pred CCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHH
Confidence 6999999999877653 45789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
+..|++.+......++|++||||
T Consensus 117 ~~~~~~~i~~~~~~~~piilV~N 139 (192)
T 2il1_A 117 LPKWMKMIDKYASEDAELLLVGN 139 (192)
T ss_dssp HHHHHHHHHHHSCTTCEEEEEEE
T ss_pred HHHHHHHHHHhcCCCCcEEEEEE
Confidence 99999999887767899999997
No 37
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.88 E-value=5.7e-23 Score=118.74 Aligned_cols=83 Identities=42% Similarity=0.746 Sum_probs=73.5
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+|||||+.++..+.+. ..+.+++|||+|++++..++..+++++|++|+|||++++++|+.
T Consensus 39 ~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~ 118 (199)
T 2p5s_A 39 VGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLN 118 (199)
T ss_dssp SSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHT
T ss_pred CCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHH
Confidence 6999999999877653 45779999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
+..|++.+......++|++||||
T Consensus 119 ~~~~~~~i~~~~~~~~piilv~N 141 (199)
T 2p5s_A 119 IREWVDMIEDAAHETVPIMLVGN 141 (199)
T ss_dssp HHHHHHHHHHHC---CCEEEEEE
T ss_pred HHHHHHHHHHhcCCCCCEEEEEE
Confidence 99999999887667899999997
No 38
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=1.7e-23 Score=120.25 Aligned_cols=83 Identities=45% Similarity=0.787 Sum_probs=76.3
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+|||||+.++..+.+. ..+.+++|||+|++++..++..++++++++++|||++++++|+.
T Consensus 34 ~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~ 113 (191)
T 3dz8_A 34 VGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNA 113 (191)
T ss_dssp SSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHT
T ss_pred cCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHH
Confidence 6999999999877654 34679999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
+..|++++.....+++|++||||
T Consensus 114 ~~~~~~~i~~~~~~~~piilv~n 136 (191)
T 3dz8_A 114 VQDWATQIKTYSWDNAQVILVGN 136 (191)
T ss_dssp HHHHHHHHHHHSCTTCEEEEEEE
T ss_pred HHHHHHHHHHhcCCCCCEEEEEE
Confidence 99999999887778999999997
No 39
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.88 E-value=1.5e-22 Score=115.99 Aligned_cols=83 Identities=42% Similarity=0.769 Sum_probs=76.0
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+|||||+.++..+.+. ..+.+.+|||+|++++..++..+++++|++++|||++++++|+.
T Consensus 33 ~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~ 112 (189)
T 2gf9_A 33 VGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAA 112 (189)
T ss_dssp SSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHT
T ss_pred CCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHH
Confidence 6999999998877653 46789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
+..|++++.+...++.|+++|||
T Consensus 113 ~~~~~~~i~~~~~~~~piilv~n 135 (189)
T 2gf9_A 113 VQDWATQIKTYSWDNAQVILVGN 135 (189)
T ss_dssp HHHHHHHHHHHSCTTCEEEEEEE
T ss_pred HHHHHHHHHHhcCCCCCEEEEEE
Confidence 99999999887767899999997
No 40
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.88 E-value=1.8e-22 Score=115.64 Aligned_cols=83 Identities=35% Similarity=0.708 Sum_probs=74.9
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhh-cchhhhccCCcEEEEEEECCChhHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFR-TITTAYYRGAMGIMLVYDITNEKSFD 59 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~-~~~~~~~~~~~~~ilv~d~~~~~s~~ 59 (83)
+|||||+.++..+.+. ..+.+++|||+|++++. .++..+++++|++++|||+++++||+
T Consensus 31 ~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~ 110 (189)
T 1z06_A 31 VGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFH 110 (189)
T ss_dssp SSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHH
Confidence 6999999998766653 45789999999999998 89999999999999999999999999
Q ss_pred HHHHHHHHHHHhc-CCCceEEEEeC
Q psy16649 60 NIKNWIRNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 60 ~~~~w~~~~~~~~-~~~~piilvgN 83 (83)
.+..|++++.+.. ..++|+++|||
T Consensus 111 ~~~~~~~~i~~~~~~~~~piilv~n 135 (189)
T 1z06_A 111 SLPAWIEECKQHLLANDIPRILVGN 135 (189)
T ss_dssp THHHHHHHHHHHCCCSCCCEEEEEE
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 9999999998875 46899999997
No 41
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.88 E-value=1.6e-22 Score=114.27 Aligned_cols=83 Identities=34% Similarity=0.625 Sum_probs=75.5
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+|||||+.++..+.+. ..+.+.+|||+|++++..++..+++++|++++|||++++++|+.
T Consensus 25 ~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~ 104 (179)
T 2y8e_A 25 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQ 104 (179)
T ss_dssp SSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHT
T ss_pred CCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHH
Confidence 6999999998866554 34689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
+..|+.++....+.++|+++|+|
T Consensus 105 ~~~~~~~i~~~~~~~~piilv~n 127 (179)
T 2y8e_A 105 TSKWIDDVRTERGSDVIIMLVGN 127 (179)
T ss_dssp HHHHHHHHHHHHTTSSEEEEEEE
T ss_pred HHHHHHHHHHhcCCCCcEEEEEE
Confidence 99999999887767899999987
No 42
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.88 E-value=7.6e-23 Score=116.10 Aligned_cols=82 Identities=26% Similarity=0.525 Sum_probs=70.7
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 61 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~ 61 (83)
+||||++.++..+.+. ..+.+++|||+|++++..++..+++++|++++|||+++++||+++
T Consensus 19 ~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~ 98 (182)
T 3bwd_D 19 VGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENV 98 (182)
T ss_dssp SSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHH
T ss_pred CCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHH
Confidence 6999999999877654 457788999999999999999999999999999999999999999
Q ss_pred H-HHHHHHHHhcCCCceEEEEeC
Q psy16649 62 K-NWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 62 ~-~w~~~~~~~~~~~~piilvgN 83 (83)
. .|++.+.+.. +++|+++|||
T Consensus 99 ~~~~~~~~~~~~-~~~piilv~n 120 (182)
T 3bwd_D 99 SKKWIPELKHYA-PGVPIVLVGT 120 (182)
T ss_dssp HHTHHHHHHHHC-TTCCEEEEEE
T ss_pred HHHHHHHHHHhC-CCCCEEEEEe
Confidence 7 7999998876 5899999997
No 43
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.87 E-value=7e-23 Score=118.62 Aligned_cols=83 Identities=18% Similarity=0.264 Sum_probs=68.3
Q ss_pred CCcceeeeeeccCccc---------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ---------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWI 65 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~---------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~ 65 (83)
+||||++.++..+.+. ..+.+++|||+|+++++.+++.|++++|++++|||+++++||+++..|+
T Consensus 36 vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~ 115 (198)
T 1f6b_A 36 AGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEEL 115 (198)
T ss_dssp SSHHHHHHHHSCC------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHH
Confidence 7999999999876543 2378999999999999999999999999999999999999999999999
Q ss_pred HHHHHhc-CCCceEEEEeC
Q psy16649 66 RNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 66 ~~~~~~~-~~~~piilvgN 83 (83)
.++.+.. ..++|+++|||
T Consensus 116 ~~~~~~~~~~~~piilv~N 134 (198)
T 1f6b_A 116 DSLMTDETIANVPILILGN 134 (198)
T ss_dssp HHHHTCGGGTTSCEEEEEE
T ss_pred HHHHhCcccCCCcEEEEEE
Confidence 9887642 36899999998
No 44
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.87 E-value=1.3e-22 Score=115.42 Aligned_cols=83 Identities=28% Similarity=0.493 Sum_probs=74.9
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 61 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~ 61 (83)
+||||++.++..+.+. ..+.+++|||+|++++..++..+++++|++++|||+++++||+.+
T Consensus 29 ~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~ 108 (183)
T 3kkq_A 29 VGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHV 108 (183)
T ss_dssp SSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTH
T ss_pred CCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHH
Confidence 6999999998876654 567899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc-CCCceEEEEeC
Q psy16649 62 KNWIRNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 62 ~~w~~~~~~~~-~~~~piilvgN 83 (83)
..|+.++.+.. ..++|+++|||
T Consensus 109 ~~~~~~~~~~~~~~~~p~ilv~n 131 (183)
T 3kkq_A 109 DRFHQLILRVKDRESFPMILVAN 131 (183)
T ss_dssp HHHHHHHHHHHTSSCCCEEEEEE
T ss_pred HHHHHHHHHhcCCCCCcEEEEEE
Confidence 99999997743 47899999997
No 45
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.87 E-value=1.1e-22 Score=119.05 Aligned_cols=82 Identities=29% Similarity=0.573 Sum_probs=75.4
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+|||||+.++..+.+. ..+.+++|||+|++++..++..++++++++++|||+++++||+.
T Consensus 26 ~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~ 105 (221)
T 3gj0_A 26 TGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKN 105 (221)
T ss_dssp SSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHT
T ss_pred CCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHH
Confidence 7999999998776654 55789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
+..|+.++.+.. +++|+++|||
T Consensus 106 ~~~~~~~~~~~~-~~~p~ilv~n 127 (221)
T 3gj0_A 106 VPNWHRDLVRVC-ENIPIVLCGN 127 (221)
T ss_dssp HHHHHHHHHHHS-TTCCEEEEEE
T ss_pred HHHHHHHHHHhC-CCCCEEEEEE
Confidence 999999998876 6899999997
No 46
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.87 E-value=1.6e-22 Score=114.43 Aligned_cols=83 Identities=31% Similarity=0.493 Sum_probs=72.7
Q ss_pred CCcceeeeeeccCccc---------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHH
Q psy16649 1 SGENLCTLQIFRGCFQ---------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFD 59 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~---------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~ 59 (83)
+|||||+.++..+.+. ..+.+++|||+|++++..++..+++++|++++|||++++++|+
T Consensus 17 ~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~ 96 (178)
T 2hxs_A 17 SGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFE 96 (178)
T ss_dssp SSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHH
T ss_pred CCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHHHH
Confidence 6999999999877654 2489999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcC---CCceEEEEeC
Q psy16649 60 NIKNWIRNIEENAS---ANVEKMLLGN 83 (83)
Q Consensus 60 ~~~~w~~~~~~~~~---~~~piilvgN 83 (83)
++..|++++.+... ..+|+++|||
T Consensus 97 ~~~~~~~~i~~~~~~~~~~~~iilv~n 123 (178)
T 2hxs_A 97 NLEDWYTVVKKVSEESETQPLVALVGN 123 (178)
T ss_dssp THHHHHHHHHHHHHHHTCCCEEEEEEE
T ss_pred HHHHHHHHHHHHhcccCCCCeEEEEEE
Confidence 99999999977532 3455889987
No 47
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.87 E-value=1.7e-22 Score=113.25 Aligned_cols=83 Identities=16% Similarity=0.133 Sum_probs=57.3
Q ss_pred CCcceeeeeeccCccc------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIK 62 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~ 62 (83)
+|||||+.++....+. ..+.+++|||+|++++..++..+++.++++++|||+++++||+.+.
T Consensus 13 ~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~ 92 (166)
T 3q72_A 13 VGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKAS 92 (166)
T ss_dssp SSHHHHHHHHCCC----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEEETTCHHHHHHHH
T ss_pred CCHHHHHHHHcCccccCCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHH
Confidence 6999999998765442 6678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc-CCCceEEEEeC
Q psy16649 63 NWIRNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 63 ~w~~~~~~~~-~~~~piilvgN 83 (83)
.|+.++.+.. .+++|+++|||
T Consensus 93 ~~~~~~~~~~~~~~~p~ilv~n 114 (166)
T 3q72_A 93 ELRVQLRRARQTDDVPIILVGN 114 (166)
T ss_dssp HHHHHHHHCC---CCCEEEEEE
T ss_pred HHHHHHHHhcCCCCCCEEEEEe
Confidence 9999998753 36899999997
No 48
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.87 E-value=3e-22 Score=113.18 Aligned_cols=83 Identities=31% Similarity=0.579 Sum_probs=74.8
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+||||++.++..+.+. ..+.+.+|||+|++++..++..++++++++++|||++++++|+.
T Consensus 18 ~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~ 97 (177)
T 1wms_A 18 VGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQN 97 (177)
T ss_dssp SSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHT
T ss_pred CCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHH
Confidence 6999999999876654 34789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcC----CCceEEEEeC
Q psy16649 61 IKNWIRNIEENAS----ANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~----~~~piilvgN 83 (83)
+..|++++..... .++|+++|||
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~p~i~v~n 124 (177)
T 1wms_A 98 LSNWKKEFIYYADVKEPESFPFVILGN 124 (177)
T ss_dssp HHHHHHHHHHHHTCSCTTTSCEEEEEE
T ss_pred HHHHHHHHHHHccccccCCCcEEEEEE
Confidence 9999999987653 6799999997
No 49
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.87 E-value=9.9e-23 Score=116.86 Aligned_cols=78 Identities=18% Similarity=0.405 Sum_probs=69.9
Q ss_pred CCcceeeeeeccCccc------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIK 62 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~ 62 (83)
+|||||+.++..+.|. ..+.+++|||+|+++++ ++++++++++|||+++++||+++.
T Consensus 31 vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~ 105 (184)
T 3ihw_A 31 SGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVY 105 (184)
T ss_dssp SCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTCHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEEEEEECcCHHHHHHHH
Confidence 7999999998887754 56899999999999887 888999999999999999999999
Q ss_pred HHHHHHHHhcC-CCceEEEEeC
Q psy16649 63 NWIRNIEENAS-ANVEKMLLGN 83 (83)
Q Consensus 63 ~w~~~~~~~~~-~~~piilvgN 83 (83)
.|++++..... .++|++||||
T Consensus 106 ~~~~~i~~~~~~~~~piilv~n 127 (184)
T 3ihw_A 106 NYFLRLCSFRNASEVPMVLVGT 127 (184)
T ss_dssp HHHHHHHTTSCGGGSCEEEEEE
T ss_pred HHHHHHHHhcCCCCCCEEEEEE
Confidence 99999987653 6899999997
No 50
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.87 E-value=2.6e-22 Score=116.56 Aligned_cols=82 Identities=18% Similarity=0.443 Sum_probs=74.5
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 61 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~ 61 (83)
+||||++.++..+.+. ..+.+++|||+|++++..++..+++++|++++|||++++++|+++
T Consensus 41 ~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~ 120 (204)
T 4gzl_A 41 VGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENV 120 (204)
T ss_dssp SSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHH
T ss_pred CCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHH
Confidence 6999999888776654 567888999999999999999999999999999999999999999
Q ss_pred H-HHHHHHHHhcCCCceEEEEeC
Q psy16649 62 K-NWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 62 ~-~w~~~~~~~~~~~~piilvgN 83 (83)
. .|++.+.... +++|+++|||
T Consensus 121 ~~~~~~~~~~~~-~~~piilv~n 142 (204)
T 4gzl_A 121 RAKWYPEVRHHC-PNTPIILVGT 142 (204)
T ss_dssp HHTHHHHHHHHC-SSCCEEEEEE
T ss_pred HHHHHHHHHHhC-CCCCEEEEEe
Confidence 7 8999998876 7899999997
No 51
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.87 E-value=1.1e-22 Score=113.76 Aligned_cols=83 Identities=14% Similarity=0.336 Sum_probs=73.3
Q ss_pred CCcceeeeeeccCccc---------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ---------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWI 65 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~---------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~ 65 (83)
+||||++.++..+.+. ..+++++|||+|+++++.++..+++++|++++|||+++++||+.+..|+
T Consensus 11 ~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~ 90 (164)
T 1r8s_A 11 AGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREEL 90 (164)
T ss_dssp SSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHH
T ss_pred CCHHHHHHHHHcCCcCcccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHH
Confidence 6999999998766554 3478999999999999999999999999999999999999999999999
Q ss_pred HHHHHh-cCCCceEEEEeC
Q psy16649 66 RNIEEN-ASANVEKMLLGN 83 (83)
Q Consensus 66 ~~~~~~-~~~~~piilvgN 83 (83)
.++... ..+++|+++|||
T Consensus 91 ~~~~~~~~~~~~piilv~n 109 (164)
T 1r8s_A 91 MRMLAEDELRDAVLLVFAN 109 (164)
T ss_dssp HHHHTCGGGTTCEEEEEEE
T ss_pred HHHHhchhhcCCeEEEEEE
Confidence 888653 236899999997
No 52
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.87 E-value=1.3e-22 Score=118.57 Aligned_cols=82 Identities=27% Similarity=0.546 Sum_probs=57.4
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 61 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~ 61 (83)
+|||||+.++..+.+. ..+.+++|||+|+++|..++..++++++++++|||+++++||+++
T Consensus 45 vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~ 124 (214)
T 2j1l_A 45 CGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNI 124 (214)
T ss_dssp SSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEEEEETTCHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHH
Confidence 6999999999876654 456899999999999999999999999999999999999999999
Q ss_pred H-HHHHHHHHhcCCCceEEEEeC
Q psy16649 62 K-NWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 62 ~-~w~~~~~~~~~~~~piilvgN 83 (83)
. .|++.+.+.. +++|++||||
T Consensus 125 ~~~~~~~~~~~~-~~~piilv~n 146 (214)
T 2j1l_A 125 FNRWYPEVNHFC-KKVPIIVVGC 146 (214)
T ss_dssp HHTHHHHHHHHC-SSCCEEEEEE
T ss_pred HHHHHHHHHHhC-CCCCEEEEEE
Confidence 7 7999998776 6899999997
No 53
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.87 E-value=2e-22 Score=114.27 Aligned_cols=78 Identities=18% Similarity=0.362 Sum_probs=67.3
Q ss_pred CCcceeeeeeccCccc------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIK 62 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~ 62 (83)
+|||||+.++..+.|. ..+++++|||+|+++ ..|++++|++++|||+++++||+.+.
T Consensus 18 vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~~~~s~~~~~ 92 (178)
T 2iwr_A 18 SGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIFVFSLEDENSFQAVS 92 (178)
T ss_dssp GCHHHHHHHHHHSCCCCCSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEEEEETTCHHHHHHHH
T ss_pred CCHHHHHHHHHhCCCCCcCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEEEEECcCHHHHHHHH
Confidence 6999999999887663 457899999999987 57889999999999999999999999
Q ss_pred HHHHHHHHhc---CCCceEEEEeC
Q psy16649 63 NWIRNIEENA---SANVEKMLLGN 83 (83)
Q Consensus 63 ~w~~~~~~~~---~~~~piilvgN 83 (83)
.|++.+.... .+++|++||||
T Consensus 93 ~~~~~i~~~~~~~~~~~piilv~n 116 (178)
T 2iwr_A 93 RLHGQLSSLRGEGRGGLALALVGT 116 (178)
T ss_dssp HHHHHHHHHHCSSSCCCEEEEEEE
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEE
Confidence 9877766543 36899999997
No 54
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.87 E-value=3.9e-22 Score=116.35 Aligned_cols=83 Identities=25% Similarity=0.524 Sum_probs=76.2
Q ss_pred CCcceeeeeeccCccc---------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHH
Q psy16649 1 SGENLCTLQIFRGCFQ---------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFD 59 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~---------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~ 59 (83)
+|||||+.++..+.+. ..+.+.+|||+|++++..++..+++++|++|+|||++++.+|+
T Consensus 22 ~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~ 101 (218)
T 4djt_A 22 VGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQ 101 (218)
T ss_dssp SSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHH
T ss_pred CCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHH
Confidence 7999999999977654 2278999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 60 NIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 60 ~~~~w~~~~~~~~~~~~piilvgN 83 (83)
++..|++++....+.+.|+++|||
T Consensus 102 ~~~~~~~~~~~~~~~~~piilv~n 125 (218)
T 4djt_A 102 NLARWVKEFQAVVGNEAPIVVCAN 125 (218)
T ss_dssp THHHHHHHHHHHHCSSSCEEEEEE
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEE
Confidence 999999999988767799999997
No 55
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.87 E-value=2.4e-22 Score=115.68 Aligned_cols=83 Identities=19% Similarity=0.295 Sum_probs=73.6
Q ss_pred CCcceeeeeeccCccc---------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ---------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWI 65 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~---------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~ 65 (83)
+||||++.++..+.+. ..+++++|||+|+++++.++..+++++|++++|||+++++||+++..|+
T Consensus 34 vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~ 113 (190)
T 1m2o_B 34 AGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVEL 113 (190)
T ss_dssp SSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHH
Confidence 6999999999876554 2378999999999999999999999999999999999999999999999
Q ss_pred HHHHHhc-CCCceEEEEeC
Q psy16649 66 RNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 66 ~~~~~~~-~~~~piilvgN 83 (83)
.++.+.. ..++|+++|||
T Consensus 114 ~~~~~~~~~~~~piilv~N 132 (190)
T 1m2o_B 114 DALFNIAELKDVPFVILGN 132 (190)
T ss_dssp HHHHTCGGGTTCCEEEEEE
T ss_pred HHHHcchhhcCCCEEEEEE
Confidence 9887642 36899999997
No 56
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.87 E-value=2.7e-22 Score=115.17 Aligned_cols=83 Identities=36% Similarity=0.697 Sum_probs=75.3
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+|||||+.++..+.+. ..+.+.+|||+|++++..++..++++++++|+|||++++.+|+.
T Consensus 36 ~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~ 115 (193)
T 2oil_A 36 VGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAV 115 (193)
T ss_dssp SSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHT
T ss_pred CCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHH
Confidence 6999999998876654 45788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
+..|++++......++|+++|||
T Consensus 116 ~~~~l~~i~~~~~~~~piilv~n 138 (193)
T 2oil_A 116 VERWLKELYDHAEATIVVMLVGN 138 (193)
T ss_dssp HHHHHHHHHTTSCTTCEEEEEEE
T ss_pred HHHHHHHHHHhcCCCCeEEEEEE
Confidence 99999999877667899999997
No 57
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.87 E-value=5.4e-22 Score=114.86 Aligned_cols=82 Identities=24% Similarity=0.478 Sum_probs=73.8
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 61 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~ 61 (83)
+|||||+.++..+.+. ..+.+++|||+|++++..++..+++++|++++|||++++++|+++
T Consensus 36 ~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~ 115 (201)
T 2gco_A 36 CGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENI 115 (201)
T ss_dssp SSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHH
T ss_pred CCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHH
Confidence 6999999998876553 457899999999999999999999999999999999999999999
Q ss_pred -HHHHHHHHHhcCCCceEEEEeC
Q psy16649 62 -KNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 62 -~~w~~~~~~~~~~~~piilvgN 83 (83)
..|.+.+.+.. +++|+++|||
T Consensus 116 ~~~~~~~~~~~~-~~~piilv~n 137 (201)
T 2gco_A 116 PEKWTPEVKHFC-PNVPIILVGN 137 (201)
T ss_dssp HHTHHHHHHHHS-TTCCEEEEEE
T ss_pred HHHHHHHHHHhC-CCCCEEEEEe
Confidence 68999888766 6899999997
No 58
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.87 E-value=5.4e-22 Score=115.13 Aligned_cols=83 Identities=48% Similarity=0.886 Sum_probs=75.4
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+|||||+.++..+.+. ..+.+.+|||+|++++..++..+++++|++++|||++++++|+.
T Consensus 31 ~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~ 110 (213)
T 3cph_A 31 VGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTN 110 (213)
T ss_dssp SSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHT
T ss_pred CCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHH
Confidence 6999999998876653 34789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
+..|++.+......++|+++|+|
T Consensus 111 ~~~~~~~i~~~~~~~~piilv~n 133 (213)
T 3cph_A 111 IKQWFKTVNEHANDEAQLLLVGN 133 (213)
T ss_dssp HHHHHHHHHHHTTTCSEEEEEEE
T ss_pred HHHHHHHHHHhcCCCCCEEEEEE
Confidence 99999999887767899999987
No 59
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.87 E-value=2.3e-22 Score=112.99 Aligned_cols=83 Identities=12% Similarity=0.165 Sum_probs=66.2
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhc-chhhhccCCcEEEEEEECCChhHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRT-ITTAYYRGAMGIMLVYDITNEKSFD 59 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~-~~~~~~~~~~~~ilv~d~~~~~s~~ 59 (83)
+|||||+.++..+.+. ..+.+.+|||+|++++.. ++..+++++|++++|||+++++||+
T Consensus 13 ~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~ 92 (169)
T 3q85_A 13 VGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFS 92 (169)
T ss_dssp SSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEEEEETTCHHHHH
T ss_pred CCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHHHH
Confidence 7999999998654433 568999999999999876 8888999999999999999999999
Q ss_pred HHHHHHHHHHHhcC-CCceEEEEeC
Q psy16649 60 NIKNWIRNIEENAS-ANVEKMLLGN 83 (83)
Q Consensus 60 ~~~~w~~~~~~~~~-~~~piilvgN 83 (83)
.+..|+.++....+ +++|+++|||
T Consensus 93 ~~~~~~~~~~~~~~~~~~p~ilv~n 117 (169)
T 3q85_A 93 KVPETLLRLRAGRPHHDLPVILVGN 117 (169)
T ss_dssp THHHHHHHHHHHSTTSCCCEEEEEE
T ss_pred HHHHHHHHHHhcccCCCCCEEEEee
Confidence 99999999988764 5899999997
No 60
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.87 E-value=4.4e-22 Score=112.65 Aligned_cols=83 Identities=28% Similarity=0.508 Sum_probs=73.7
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 61 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~ 61 (83)
+|||||+.++..+.+. ..+.+++|||+|++++..++..++++++++++|||++++++|+.+
T Consensus 20 ~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~ 99 (181)
T 2fn4_A 20 VGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEV 99 (181)
T ss_dssp SSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHH
T ss_pred CCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHH
Confidence 6999999998776543 357899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh-cCCCceEEEEeC
Q psy16649 62 KNWIRNIEEN-ASANVEKMLLGN 83 (83)
Q Consensus 62 ~~w~~~~~~~-~~~~~piilvgN 83 (83)
..|+.++.+. ...++|+++|||
T Consensus 100 ~~~~~~~~~~~~~~~~piilv~n 122 (181)
T 2fn4_A 100 GKLFTQILRVKDRDDFPVVLVGN 122 (181)
T ss_dssp HHHHHHHHHHHTSSCCCEEEEEE
T ss_pred HHHHHHHHHhcCCCCCCEEEEEE
Confidence 9999998554 446899999997
No 61
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.87 E-value=4.9e-22 Score=111.31 Aligned_cols=82 Identities=33% Similarity=0.620 Sum_probs=74.8
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+||||++.++..+.+. ..+.+.+|||+|++++..++..+++++|++++|||++++++|+.
T Consensus 16 ~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~ 95 (168)
T 1z2a_A 16 VGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEA 95 (168)
T ss_dssp SSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHT
T ss_pred CCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHH
Confidence 6999999998876654 36789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
+..|++++.... ++.|+++|+|
T Consensus 96 ~~~~~~~i~~~~-~~~piilv~n 117 (168)
T 1z2a_A 96 ISSWREKVVAEV-GDIPTALVQN 117 (168)
T ss_dssp HHHHHHHHHHHH-CSCCEEEEEE
T ss_pred HHHHHHHHHHhC-CCCCEEEEEE
Confidence 999999998876 7899999987
No 62
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.86 E-value=3.9e-22 Score=114.63 Aligned_cols=83 Identities=18% Similarity=0.280 Sum_probs=72.3
Q ss_pred CCcceeeeeeccCccce-----------------EEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQH-----------------NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKN 63 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~~-----------------~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~ 63 (83)
+|||||+.++..+.+.. .+.+++|||+|++++..++..+++++|++|+|||+++++||+++..
T Consensus 28 ~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~ 107 (199)
T 4bas_A 28 SGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKS 107 (199)
T ss_dssp SCHHHHHHHHSCCC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHH
T ss_pred CCHHHHHHHHhcCCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHH
Confidence 79999999998877653 4789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcC--------CCceEEEEeC
Q psy16649 64 WIRNIEENAS--------ANVEKMLLGN 83 (83)
Q Consensus 64 w~~~~~~~~~--------~~~piilvgN 83 (83)
|+.++.+... +++|++||||
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~piilv~N 135 (199)
T 4bas_A 108 EIQAMLKHEDIRRELPGGGRVPFLFFAN 135 (199)
T ss_dssp HHHHHHTSHHHHSBCTTSCBCCEEEEEE
T ss_pred HHHHHHhChhhhhcccccCCCCEEEEEE
Confidence 9888865421 3899999997
No 63
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.86 E-value=4.6e-22 Score=111.17 Aligned_cols=83 Identities=33% Similarity=0.519 Sum_probs=72.1
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 61 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~ 61 (83)
+||||++.++..+.+. ..+.+.+|||+|++++..++..++++++++++|||++++++|+.+
T Consensus 15 ~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~ 94 (168)
T 1u8z_A 15 VGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAAT 94 (168)
T ss_dssp SSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHH
T ss_pred CCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHH
Confidence 6999999998876654 457899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcC-CCceEEEEeC
Q psy16649 62 KNWIRNIEENAS-ANVEKMLLGN 83 (83)
Q Consensus 62 ~~w~~~~~~~~~-~~~piilvgN 83 (83)
..|++++.+... .++|+++|+|
T Consensus 95 ~~~~~~i~~~~~~~~~piilv~n 117 (168)
T 1u8z_A 95 ADFREQILRVKEDENVPFLLVGN 117 (168)
T ss_dssp HHHHHHHHHHHCCTTSCEEEEEE
T ss_pred HHHHHHHHHhcCCCCCcEEEEEE
Confidence 999999988764 5899999997
No 64
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.86 E-value=2.4e-22 Score=112.50 Aligned_cols=83 Identities=29% Similarity=0.551 Sum_probs=74.6
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 61 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~ 61 (83)
+||||++.++..+.+. ..+.+++|||+|++++..++..++++++++++|||+++++||+.+
T Consensus 14 ~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~ 93 (167)
T 1c1y_A 14 VGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDL 93 (167)
T ss_dssp SSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTH
T ss_pred CCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHH
Confidence 6999999999877654 367899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc-CCCceEEEEeC
Q psy16649 62 KNWIRNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 62 ~~w~~~~~~~~-~~~~piilvgN 83 (83)
..|++++.+.. .++.|+++|||
T Consensus 94 ~~~~~~i~~~~~~~~~piilv~n 116 (167)
T 1c1y_A 94 QDLREQILRVKDTEDVPMILVGN 116 (167)
T ss_dssp HHHHHHHHHHHCCSCCCEEEEEE
T ss_pred HHHHHHHHHhhCcCCCcEEEEEE
Confidence 99999988754 36899999997
No 65
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.86 E-value=3.4e-22 Score=114.20 Aligned_cols=83 Identities=19% Similarity=0.335 Sum_probs=72.9
Q ss_pred CCcceeeeeeccCccc---------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ---------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWI 65 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~---------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~ 65 (83)
+||||++.++..+.+. ..+.+++|||+|+++++.++..+++++|++++|||++++++|+++..|+
T Consensus 27 vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 106 (181)
T 1fzq_A 27 AGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQEL 106 (181)
T ss_dssp SSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHH
Confidence 6999999999877543 2467999999999999999999999999999999999999999999998
Q ss_pred HHHHHh-cCCCceEEEEeC
Q psy16649 66 RNIEEN-ASANVEKMLLGN 83 (83)
Q Consensus 66 ~~~~~~-~~~~~piilvgN 83 (83)
.++.+. ...++|+++|||
T Consensus 107 ~~~~~~~~~~~~piilv~N 125 (181)
T 1fzq_A 107 TELLEEEKLSCVPVLIFAN 125 (181)
T ss_dssp HHHTTCGGGTTCCEEEEEE
T ss_pred HHHHhChhhcCCCEEEEEE
Confidence 887553 236899999997
No 66
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.86 E-value=3.4e-22 Score=115.61 Aligned_cols=83 Identities=30% Similarity=0.556 Sum_probs=72.8
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 61 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~ 61 (83)
+|||||+.++..+.+. ..+.+++|||+|++++..++..++++++++++|||++++++|+.+
T Consensus 35 ~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~ 114 (201)
T 3oes_A 35 VGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVI 114 (201)
T ss_dssp SSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHH
T ss_pred cCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHH
Confidence 6999999999887764 457889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc-CCCceEEEEeC
Q psy16649 62 KNWIRNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 62 ~~w~~~~~~~~-~~~~piilvgN 83 (83)
..|+.++.+.. ..++|++||||
T Consensus 115 ~~~~~~i~~~~~~~~~piilv~n 137 (201)
T 3oes_A 115 ESLYQKLHEGHGKTRVPVVLVGN 137 (201)
T ss_dssp HHHHHHHHC-----CCCEEEEEE
T ss_pred HHHHHHHHHhcCCCCCCEEEEEE
Confidence 99999997754 35799999997
No 67
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=9.3e-22 Score=114.29 Aligned_cols=82 Identities=22% Similarity=0.462 Sum_probs=74.0
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 61 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~ 61 (83)
+|||||+.++..+.+. ..+.+.+|||+|++++..++..+++++|++++|||++++++|+++
T Consensus 36 ~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~ 115 (207)
T 2fv8_A 36 CGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENI 115 (207)
T ss_dssp SSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHH
T ss_pred CCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHH
Confidence 7999999998876654 457899999999999999999999999999999999999999999
Q ss_pred -HHHHHHHHHhcCCCceEEEEeC
Q psy16649 62 -KNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 62 -~~w~~~~~~~~~~~~piilvgN 83 (83)
..|++.+.... ++.|+++|||
T Consensus 116 ~~~~~~~~~~~~-~~~piilv~n 137 (207)
T 2fv8_A 116 PEKWVPEVKHFC-PNVPIILVAN 137 (207)
T ss_dssp HHTHHHHHHHHS-TTCCEEEEEE
T ss_pred HHHHHHHHHHhC-CCCCEEEEEE
Confidence 68999988765 6899999997
No 68
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.86 E-value=3.8e-22 Score=112.98 Aligned_cols=83 Identities=36% Similarity=0.590 Sum_probs=64.6
Q ss_pred CCcceeeeeeccCccc---------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHH
Q psy16649 1 SGENLCTLQIFRGCFQ---------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFD 59 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~---------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~ 59 (83)
+||||++.++..+.+. ..+.+.+|||+|++++..++..+++++|++++|||++++++|+
T Consensus 19 ~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~ 98 (182)
T 1ky3_A 19 VGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFE 98 (182)
T ss_dssp SSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEEEEETTCHHHHH
T ss_pred CCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHH
Confidence 6999999998776653 2468999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcC----CCceEEEEeC
Q psy16649 60 NIKNWIRNIEENAS----ANVEKMLLGN 83 (83)
Q Consensus 60 ~~~~w~~~~~~~~~----~~~piilvgN 83 (83)
.+..|++++..... .++|+++|||
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~p~ilv~n 126 (182)
T 1ky3_A 99 NIKSWRDEFLVHANVNSPETFPFVILGN 126 (182)
T ss_dssp THHHHHHHHHHHHCCSCTTTCCEEEEEE
T ss_pred HHHHHHHHHHHHhcccCcCCCcEEEEEE
Confidence 99999999987653 6899999997
No 69
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=6.4e-22 Score=113.29 Aligned_cols=83 Identities=40% Similarity=0.768 Sum_probs=74.7
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+|||||+.++..+.+. ..+.+.+|||+|++++..++..+++++|++++|||++++++|+.
T Consensus 26 ~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~ 105 (195)
T 1x3s_A 26 VGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVK 105 (195)
T ss_dssp SSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHT
T ss_pred CCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHH
Confidence 6999999999877654 45789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc-CCCceEEEEeC
Q psy16649 61 IKNWIRNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~-~~~~piilvgN 83 (83)
+..|++++.+.. ..++|+++|+|
T Consensus 106 ~~~~~~~i~~~~~~~~~p~ilv~n 129 (195)
T 1x3s_A 106 LDNWLNELETYCTRNDIVNMLVGN 129 (195)
T ss_dssp HHHHHHHHTTCCSCSCCEEEEEEE
T ss_pred HHHHHHHHHHhcCcCCCcEEEEEE
Confidence 999999998764 36799999987
No 70
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.86 E-value=8.5e-22 Score=112.22 Aligned_cols=83 Identities=31% Similarity=0.568 Sum_probs=72.0
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 61 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~ 61 (83)
+|||||+.++..+.+. ..+.+++|||+|++++..++..+++.++++++|||++++++|+.+
T Consensus 15 ~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~ 94 (189)
T 4dsu_A 15 VGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI 94 (189)
T ss_dssp SSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHH
T ss_pred CCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHH
Confidence 6999999998876654 557799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc-CCCceEEEEeC
Q psy16649 62 KNWIRNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 62 ~~w~~~~~~~~-~~~~piilvgN 83 (83)
..|+..+.... ..++|+++|||
T Consensus 95 ~~~~~~~~~~~~~~~~p~i~v~n 117 (189)
T 4dsu_A 95 HHYREQIKRVKDSEDVPMVLVGN 117 (189)
T ss_dssp HHHHHHHHHHTTCSCCCEEEEEE
T ss_pred HHHHHHHHHhcCCCCCcEEEEEE
Confidence 99999998854 36899999997
No 71
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.86 E-value=5e-22 Score=114.48 Aligned_cols=83 Identities=14% Similarity=0.336 Sum_probs=68.9
Q ss_pred CCcceeeeeeccCccc---------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ---------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWI 65 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~---------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~ 65 (83)
+|||||+.++..+.+. ..+.+++|||+|+++++.++..+++++|++++|||++++++|+.+..|+
T Consensus 40 vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l 119 (192)
T 2b6h_A 40 AGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADEL 119 (192)
T ss_dssp SSHHHHHHHHCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHH
T ss_pred CCHHHHHHHHHhCCccccCCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHH
Confidence 6999999999877665 3468999999999999999999999999999999999999999999999
Q ss_pred HHHHHhc-CCCceEEEEeC
Q psy16649 66 RNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 66 ~~~~~~~-~~~~piilvgN 83 (83)
.++.+.. .+++|+++|||
T Consensus 120 ~~~~~~~~~~~~piilv~N 138 (192)
T 2b6h_A 120 QKMLQEDELRDAVLLVFAN 138 (192)
T ss_dssp HHHHTCGGGTTCEEEEEEE
T ss_pred HHHhcccccCCCeEEEEEE
Confidence 8886532 36899999997
No 72
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=5.8e-22 Score=113.38 Aligned_cols=83 Identities=17% Similarity=0.233 Sum_probs=70.1
Q ss_pred CCcceeeeeeccCccc---------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ---------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWI 65 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~---------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~ 65 (83)
+||||++.++..+.+. ..+.+++|||+|+++++.++..+++++|++++|||+++++||+++..|+
T Consensus 27 ~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~ 106 (187)
T 1zj6_A 27 AGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREEL 106 (187)
T ss_dssp SSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCCcCcCCCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHH
Confidence 7999999999876654 3468999999999999999999999999999999999999999999999
Q ss_pred HHHHHhc-CCCceEEEEeC
Q psy16649 66 RNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 66 ~~~~~~~-~~~~piilvgN 83 (83)
.++.+.. ..+.|+++|||
T Consensus 107 ~~~~~~~~~~~~piilv~N 125 (187)
T 1zj6_A 107 YKMLAHEDLRKAGLLIFAN 125 (187)
T ss_dssp HHHHTSGGGTTCEEEEEEE
T ss_pred HHHHhchhhCCCeEEEEEE
Confidence 9887653 36899999997
No 73
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.86 E-value=6.8e-22 Score=112.70 Aligned_cols=83 Identities=17% Similarity=0.233 Sum_probs=73.9
Q ss_pred CCcceeeeeeccCccc---------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ---------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWI 65 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~---------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~ 65 (83)
+|||||+.++..+.+. ..+.+++|||+|+++++.++..+++++|++++|||++++++|+++..|+
T Consensus 32 ~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~ 111 (181)
T 2h17_A 32 AGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREEL 111 (181)
T ss_dssp SSHHHHHHHHHTTSCEEEECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCCccCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHH
Confidence 6999999999877663 3378999999999999999999999999999999999999999999998
Q ss_pred HHHHHhc-CCCceEEEEeC
Q psy16649 66 RNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 66 ~~~~~~~-~~~~piilvgN 83 (83)
.++.+.. ..++|+++|||
T Consensus 112 ~~~~~~~~~~~~piilv~N 130 (181)
T 2h17_A 112 YKMLAHEDLRKAGLLIFAN 130 (181)
T ss_dssp HHHHTCGGGTTCEEEEEEE
T ss_pred HHHHhChhhCCCeEEEEEE
Confidence 8887642 36899999997
No 74
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.86 E-value=5.7e-22 Score=113.66 Aligned_cols=83 Identities=29% Similarity=0.480 Sum_probs=73.8
Q ss_pred CCcceeeeeeccCccc----------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ----------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNW 64 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~----------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w 64 (83)
+|||||+.++..+.+. ..+.+++|||+|++++..++..+++++|++++|||++++++|+.+..|
T Consensus 33 ~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~ 112 (188)
T 1zd9_A 33 SGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNE 112 (188)
T ss_dssp SSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCccCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHH
Confidence 6999999999877664 246899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhc-CCCceEEEEeC
Q psy16649 65 IRNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 65 ~~~~~~~~-~~~~piilvgN 83 (83)
+.++.+.. ..++|+++|||
T Consensus 113 ~~~~~~~~~~~~~piilv~N 132 (188)
T 1zd9_A 113 LHNLLDKPQLQGIPVLVLGN 132 (188)
T ss_dssp HHHHHTCGGGTTCCEEEEEE
T ss_pred HHHHHhCcccCCCCEEEEEE
Confidence 98886642 36899999997
No 75
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.86 E-value=1.1e-21 Score=109.59 Aligned_cols=83 Identities=31% Similarity=0.515 Sum_probs=74.3
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 61 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~ 61 (83)
+||||++.++..+.+. ..+.+++|||+|++++..++..++++++++++|||++++++|+.+
T Consensus 14 ~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~ 93 (167)
T 1kao_A 14 VGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDI 93 (167)
T ss_dssp SSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHH
T ss_pred CCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHH
Confidence 6999999998877654 456799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc-CCCceEEEEeC
Q psy16649 62 KNWIRNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 62 ~~w~~~~~~~~-~~~~piilvgN 83 (83)
..|..++.+.. ..+.|+++|+|
T Consensus 94 ~~~~~~i~~~~~~~~~piilv~n 116 (167)
T 1kao_A 94 KPMRDQIIRVKRYEKVPVILVGN 116 (167)
T ss_dssp HHHHHHHHHHTTTSCCCEEEEEE
T ss_pred HHHHHHHHHhcCCCCCCEEEEEE
Confidence 99999987764 36899999997
No 76
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.85 E-value=1.1e-21 Score=110.62 Aligned_cols=83 Identities=17% Similarity=0.214 Sum_probs=65.1
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchh--hhcchhhhccCCcEEEEEEECCChhHHH
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQER--FRTITTAYYRGAMGIMLVYDITNEKSFD 59 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~--~~~~~~~~~~~~~~~ilv~d~~~~~s~~ 59 (83)
+|||||+.++..+.+. ..+.+++|||+|+++ +..+...+++.++++++|||+++++||+
T Consensus 15 vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~ 94 (175)
T 2nzj_A 15 VGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFE 94 (175)
T ss_dssp SSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHH
T ss_pred ccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHH
Confidence 6999999998776653 457899999999998 6778889999999999999999999999
Q ss_pred HHHHHHHHHHHhc-CCCceEEEEeC
Q psy16649 60 NIKNWIRNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 60 ~~~~w~~~~~~~~-~~~~piilvgN 83 (83)
.+..|+.++.+.. .+++|+++|||
T Consensus 95 ~~~~~~~~l~~~~~~~~~piilv~N 119 (175)
T 2nzj_A 95 SASELRIQLRRTHQADHVPIILVGN 119 (175)
T ss_dssp HHHHHHHHHHHCC----CCEEEEEE
T ss_pred HHHHHHHHHHHhhccCCCCEEEEEE
Confidence 9999999988753 36899999997
No 77
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.85 E-value=8.3e-22 Score=110.76 Aligned_cols=83 Identities=16% Similarity=0.224 Sum_probs=73.3
Q ss_pred CCcceeeeeeccCccc---------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ---------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWI 65 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~---------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~ 65 (83)
+|||||+.++..+.+. ..+.+++|||+|+++++.++..+++++|++++|||++++++|+.+..|+
T Consensus 18 ~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~ 97 (171)
T 1upt_A 18 AGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSEL 97 (171)
T ss_dssp SSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCCCcCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHH
Confidence 6999999999876654 3478999999999999999999999999999999999999999999998
Q ss_pred HHHHHhc-CCCceEEEEeC
Q psy16649 66 RNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 66 ~~~~~~~-~~~~piilvgN 83 (83)
.++.+.. ..+.|+++|+|
T Consensus 98 ~~~~~~~~~~~~piilv~n 116 (171)
T 1upt_A 98 VAMLEEEELRKAILVVFAN 116 (171)
T ss_dssp HHHHTCGGGTTCEEEEEEE
T ss_pred HHHHhchhhCCCEEEEEEE
Confidence 8876543 26899999997
No 78
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.85 E-value=9.5e-22 Score=113.68 Aligned_cols=83 Identities=34% Similarity=0.543 Sum_probs=74.2
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
+|||||+.++..+.+. ..+.+.+|||+|++++..++..+++++|++|+|||++++++|+.
T Consensus 19 ~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~ 98 (207)
T 1vg8_A 19 VGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKT 98 (207)
T ss_dssp SSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHT
T ss_pred CCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHH
Confidence 6999999998776643 35789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcC----CCceEEEEeC
Q psy16649 61 IKNWIRNIEENAS----ANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~----~~~piilvgN 83 (83)
+..|+.++..... .++|+++|||
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~piilv~n 125 (207)
T 1vg8_A 99 LDSWRDEFLIQASPRDPENFPFVVLGN 125 (207)
T ss_dssp HHHHHHHHHHHHCCSSGGGSCEEEEEE
T ss_pred HHHHHHHHHHhcccccCCCCcEEEEEE
Confidence 9999999887653 5789999997
No 79
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.85 E-value=1.3e-21 Score=112.95 Aligned_cols=83 Identities=33% Similarity=0.519 Sum_probs=74.9
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 61 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~ 61 (83)
+|||||+.++..+.+. ..+.+.+|||+|++++..++..++++++++++|||++++++|+.+
T Consensus 25 ~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~ 104 (206)
T 2bov_A 25 VGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAAT 104 (206)
T ss_dssp SSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHH
T ss_pred CCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHH
Confidence 6999999999876654 457899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcC-CCceEEEEeC
Q psy16649 62 KNWIRNIEENAS-ANVEKMLLGN 83 (83)
Q Consensus 62 ~~w~~~~~~~~~-~~~piilvgN 83 (83)
..|+.++..... .++|+++|||
T Consensus 105 ~~~~~~i~~~~~~~~~piilv~n 127 (206)
T 2bov_A 105 ADFREQILRVKEDENVPFLLVGN 127 (206)
T ss_dssp HHHHHHHHHHTTCSCCCEEEEEE
T ss_pred HHHHHHHHHhcCCCCCCEEEEEe
Confidence 999999988653 5899999997
No 80
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.85 E-value=1.4e-21 Score=111.09 Aligned_cols=83 Identities=33% Similarity=0.519 Sum_probs=74.9
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 61 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~ 61 (83)
+|||||+.++..+.+. ..+.+.+|||+|++++..++..+++.++++++|||++++++|+.+
T Consensus 29 ~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~ 108 (187)
T 2a9k_A 29 VGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAAT 108 (187)
T ss_dssp SSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHH
T ss_pred CCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHH
Confidence 6999999998876654 457899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcC-CCceEEEEeC
Q psy16649 62 KNWIRNIEENAS-ANVEKMLLGN 83 (83)
Q Consensus 62 ~~w~~~~~~~~~-~~~piilvgN 83 (83)
..|++++.+... .++|+++|+|
T Consensus 109 ~~~~~~i~~~~~~~~~piilv~n 131 (187)
T 2a9k_A 109 ADFREQILRVKEDENVPFLLVGN 131 (187)
T ss_dssp HHHHHHHHHHHCCTTCCEEEEEE
T ss_pred HHHHHHHHHhcCCCCCCEEEEEE
Confidence 999999988764 5899999987
No 81
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.85 E-value=1.6e-21 Score=111.82 Aligned_cols=83 Identities=17% Similarity=0.298 Sum_probs=73.6
Q ss_pred CCcceeeeeeccCc-cc----------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHH
Q psy16649 1 SGENLCTLQIFRGC-FQ----------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKN 63 (83)
Q Consensus 1 ~GKss~~~~~~~~~-~~----------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~ 63 (83)
+|||||+.++..+. +. ..+.+.+|||+|+++++.++..+++++|++++|||+++++||+.+..
T Consensus 32 ~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~ 111 (190)
T 2h57_A 32 SGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKE 111 (190)
T ss_dssp SSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCCCCCcCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHH
Confidence 79999999998776 32 33689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcC---CCceEEEEeC
Q psy16649 64 WIRNIEENAS---ANVEKMLLGN 83 (83)
Q Consensus 64 w~~~~~~~~~---~~~piilvgN 83 (83)
|+.++.+... .+.|+++|+|
T Consensus 112 ~~~~~~~~~~~~~~~~piilv~n 134 (190)
T 2h57_A 112 ELDTLLNHPDIKHRRIPILFFAN 134 (190)
T ss_dssp HHHHHHHSTTTTTSCCCEEEEEE
T ss_pred HHHHHHhChhhccCCCeEEEEEe
Confidence 9998877543 5799999997
No 82
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.85 E-value=2e-21 Score=110.87 Aligned_cols=83 Identities=43% Similarity=0.761 Sum_probs=74.7
Q ss_pred CCcceeeeeeccCccc---------------------e---------EEEEEEEeCCCchhhhcchhhhccCCcEEEEEE
Q psy16649 1 SGENLCTLQIFRGCFQ---------------------H---------NFHINYRDTAGQERFRTITTAYYRGAMGIMLVY 50 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~---------------------~---------~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~ 50 (83)
+|||||+.++..+.+. . .+.+++|||+|++++..++..+++++|++++||
T Consensus 22 ~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 101 (195)
T 3bc1_A 22 VGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLF 101 (195)
T ss_dssp SSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEE
T ss_pred CCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEE
Confidence 6999999998866553 1 578999999999999999999999999999999
Q ss_pred ECCChhHHHHHHHHHHHHHHhcC-CCceEEEEeC
Q psy16649 51 DITNEKSFDNIKNWIRNIEENAS-ANVEKMLLGN 83 (83)
Q Consensus 51 d~~~~~s~~~~~~w~~~~~~~~~-~~~piilvgN 83 (83)
|++++++++.+..|++++..... .++|+++|+|
T Consensus 102 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~n 135 (195)
T 3bc1_A 102 DLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGN 135 (195)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEE
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 99999999999999999988764 6899999987
No 83
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.85 E-value=5.5e-22 Score=113.55 Aligned_cols=66 Identities=20% Similarity=0.262 Sum_probs=59.0
Q ss_pred eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECC------ChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDIT------NEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~------~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
..+.+++|||+|+++|..+++.+++++|++|+|||++ ++++|+.+..|+.+++.. .+++|++||||
T Consensus 72 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~-~~~~piilv~N 143 (198)
T 3t1o_A 72 FKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLT-LDDVPIVIQVN 143 (198)
T ss_dssp CEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCC-TTSSCEEEEEE
T ss_pred CceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccc-cCCCCEEEEEE
Confidence 4578999999999999999999999999999999999 678889999999888433 37899999997
No 84
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.85 E-value=1.8e-21 Score=111.01 Aligned_cols=83 Identities=16% Similarity=0.318 Sum_probs=72.9
Q ss_pred CCcceeeeeeccCccc---------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ---------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWI 65 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~---------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~ 65 (83)
+||||++.++..+... ..+.+++|||+|++++..++..+++++|++++|||+++++||+++..|+
T Consensus 29 ~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~ 108 (186)
T 1ksh_A 29 AGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQREL 108 (186)
T ss_dssp SSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCCcccccCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHH
Confidence 6999999998866532 3478999999999999999999999999999999999999999999999
Q ss_pred HHHHHhc-CCCceEEEEeC
Q psy16649 66 RNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 66 ~~~~~~~-~~~~piilvgN 83 (83)
.++.+.. .+++|+++|||
T Consensus 109 ~~~~~~~~~~~~piilv~n 127 (186)
T 1ksh_A 109 QSLLVEERLAGATLLIFAN 127 (186)
T ss_dssp HHHHTCGGGTTCEEEEEEE
T ss_pred HHHHhChhcCCCcEEEEEe
Confidence 8886642 36899999997
No 85
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=1.1e-21 Score=110.05 Aligned_cols=83 Identities=25% Similarity=0.444 Sum_probs=73.4
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 61 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~ 61 (83)
+||||++.++..+.+. ..+.+.+|||+|++++..++..+++.++++++|||++++++++.+
T Consensus 14 ~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~ 93 (172)
T 2erx_A 14 VGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEEL 93 (172)
T ss_dssp SSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTT
T ss_pred CCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHH
Confidence 6999999999877653 456899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcC--CCceEEEEeC
Q psy16649 62 KNWIRNIEENAS--ANVEKMLLGN 83 (83)
Q Consensus 62 ~~w~~~~~~~~~--~~~piilvgN 83 (83)
..|+..+.+... ++.|+++|+|
T Consensus 94 ~~~~~~i~~~~~~~~~~pii~v~n 117 (172)
T 2erx_A 94 KPIYEQICEIKGDVESIPIMLVGN 117 (172)
T ss_dssp HHHHHHHHHHHC---CCCEEEEEE
T ss_pred HHHHHHHHHHhCCCCCCCEEEEEE
Confidence 999988877543 5799999987
No 86
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=2.1e-21 Score=113.97 Aligned_cols=83 Identities=14% Similarity=0.181 Sum_probs=70.2
Q ss_pred CCcceeeeeeccCc--cc-------------------eEEEEEEEeCCCchh-hhcchhhhccCCcEEEEEEECCChhHH
Q psy16649 1 SGENLCTLQIFRGC--FQ-------------------HNFHINYRDTAGQER-FRTITTAYYRGAMGIMLVYDITNEKSF 58 (83)
Q Consensus 1 ~GKss~~~~~~~~~--~~-------------------~~~~l~i~Dt~g~~~-~~~~~~~~~~~~~~~ilv~d~~~~~s~ 58 (83)
+|||||+.+|.... |. ..+.+.+|||+|++. ++.+.+.|++.++++|+|||+++++||
T Consensus 48 vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf 127 (211)
T 2g3y_A 48 VGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASF 127 (211)
T ss_dssp SSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHH
T ss_pred CCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHH
Confidence 69999999987422 11 457789999999987 677888999999999999999999999
Q ss_pred HHHHHHHHHHHHhc-CCCceEEEEeC
Q psy16649 59 DNIKNWIRNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 59 ~~~~~w~~~~~~~~-~~~~piilvgN 83 (83)
+++..|..++.+.. .+++|++||||
T Consensus 128 ~~~~~~~~~l~~~~~~~~~piilVgN 153 (211)
T 2g3y_A 128 EKASELRIQLRRARQTEDIPIILVGN 153 (211)
T ss_dssp HHHHHHHHHHHTSGGGTTSCEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEEE
Confidence 99999998887642 35899999998
No 87
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.85 E-value=7.2e-22 Score=115.18 Aligned_cols=83 Identities=40% Similarity=0.767 Sum_probs=74.1
Q ss_pred CCcceeeeeeccCccc--------------------e----------EEEEEEEeCCCchhhhcchhhhccCCcEEEEEE
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------H----------NFHINYRDTAGQERFRTITTAYYRGAMGIMLVY 50 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~----------~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~ 50 (83)
+|||||+.++..+.+. . .+.+++|||+|+++|..++..+++++|++|+||
T Consensus 36 ~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~ 115 (217)
T 2f7s_A 36 VGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMF 115 (217)
T ss_dssp SSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEE
Confidence 6999999999877654 1 578999999999999999999999999999999
Q ss_pred ECCChhHHHHHHHHHHHHHHhcC-CCceEEEEeC
Q psy16649 51 DITNEKSFDNIKNWIRNIEENAS-ANVEKMLLGN 83 (83)
Q Consensus 51 d~~~~~s~~~~~~w~~~~~~~~~-~~~piilvgN 83 (83)
|++++++|+.+..|++++..... .++|++||+|
T Consensus 116 D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~N 149 (217)
T 2f7s_A 116 DLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGN 149 (217)
T ss_dssp ETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEE
T ss_pred ECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEE
Confidence 99999999999999988876553 6899999997
No 88
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.84 E-value=4.5e-21 Score=109.69 Aligned_cols=83 Identities=30% Similarity=0.533 Sum_probs=63.8
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 61 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~ 61 (83)
+||||++.++..+.+. ..+.+.+|||+|++++..++..+++.++++++|||++++++|+++
T Consensus 32 ~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~ 111 (190)
T 3con_A 32 VGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADI 111 (190)
T ss_dssp SSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEEEEEETTCHHHHHHH
T ss_pred CCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHH
Confidence 6999999999876653 457799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcC-CCceEEEEeC
Q psy16649 62 KNWIRNIEENAS-ANVEKMLLGN 83 (83)
Q Consensus 62 ~~w~~~~~~~~~-~~~piilvgN 83 (83)
..|++++..... .++|+++|+|
T Consensus 112 ~~~~~~i~~~~~~~~~p~ilv~n 134 (190)
T 3con_A 112 NLYREQIKRVKDSDDVPMVLVGN 134 (190)
T ss_dssp HHHHHHHHHHHTCSCCCEEEEEE
T ss_pred HHHHHHHHHHhCCCCCeEEEEEE
Confidence 999999987653 5799999987
No 89
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.84 E-value=5.4e-21 Score=109.61 Aligned_cols=63 Identities=35% Similarity=0.703 Sum_probs=59.6
Q ss_pred EEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 19 FHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 19 ~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
+.+.+|||+|++++..++..+++.+|++++|||++++++|+.+..|+.++.+..+ .|+++|+|
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~piilv~N 155 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN--YIIILVAN 155 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--CEEEEEEE
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC--CcEEEEEE
Confidence 8999999999999999999999999999999999999999999999999988763 99999987
No 90
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.84 E-value=1.4e-21 Score=112.74 Aligned_cols=82 Identities=15% Similarity=0.208 Sum_probs=67.2
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcch---hhhccCCcEEEEEEECCCh--
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTIT---TAYYRGAMGIMLVYDITNE-- 55 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~---~~~~~~~~~~ilv~d~~~~-- 55 (83)
+|||||+.++...... ..+.+++|||+|+++|..+. ..++++++++|+|||++++
T Consensus 31 vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~ 110 (196)
T 3llu_A 31 SGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYM 110 (196)
T ss_dssp SSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCH
T ss_pred CCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchH
Confidence 6999997754432111 23689999999999998877 8999999999999999998
Q ss_pred hHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 56 KSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 56 ~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
++++.+..|+.++.... +++|++||||
T Consensus 111 ~~~~~~~~~l~~~~~~~-~~~piilv~n 137 (196)
T 3llu_A 111 EALTRLHITVSKAYKVN-PDMNFEVFIH 137 (196)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCEEEEEEE
T ss_pred HHHHHHHHHHHHHHhcC-CCCcEEEEEe
Confidence 78888888888876554 6899999998
No 91
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.84 E-value=1e-21 Score=112.38 Aligned_cols=83 Identities=16% Similarity=0.244 Sum_probs=73.4
Q ss_pred CCcceeeeeeccCccc---------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ---------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWI 65 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~---------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~ 65 (83)
+||||++.++..+.+. ..+.+++|||+|+++++.++..+++++|++++|||++++++|+++..|+
T Consensus 33 ~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~ 112 (189)
T 2x77_A 33 AGKTSILYRLHLGDVVTTVPTVGVNLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHEL 112 (189)
T ss_dssp SSHHHHHHHTCCSCCEEECSSTTCCEEEEEETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCcCCCCceEEEEEEECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHH
Confidence 7999999999877664 3478999999999999999999999999999999999999999999998
Q ss_pred HHHHHhc-CCCceEEEEeC
Q psy16649 66 RNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 66 ~~~~~~~-~~~~piilvgN 83 (83)
.++.... .++.|+++|+|
T Consensus 113 ~~~~~~~~~~~~piilv~n 131 (189)
T 2x77_A 113 YALLDEDELRKSLLLIFAN 131 (189)
T ss_dssp HHHHTCSTTTTCEEEEEEE
T ss_pred HHHHhhhhcCCCeEEEEEE
Confidence 8876543 36899999997
No 92
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=2.1e-21 Score=111.79 Aligned_cols=82 Identities=29% Similarity=0.417 Sum_probs=73.3
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 61 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~ 61 (83)
+|||||+.++..+.+. ..+.+++|||+|+++ ..++..+++.++++++|||+++++||+.+
T Consensus 39 vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~ 117 (196)
T 2atv_A 39 VGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEV 117 (196)
T ss_dssp SSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTH
T ss_pred CCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHH
Confidence 6999999999877654 457899999999988 78899999999999999999999999999
Q ss_pred HHHHHHHHHhc-CCCceEEEEeC
Q psy16649 62 KNWIRNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 62 ~~w~~~~~~~~-~~~~piilvgN 83 (83)
..|++.+.+.. ..++|+++|||
T Consensus 118 ~~~~~~i~~~~~~~~~piilv~N 140 (196)
T 2atv_A 118 LPLKNILDEIKKPKNVTLILVGN 140 (196)
T ss_dssp HHHHHHHHHHHTTSCCCEEEEEE
T ss_pred HHHHHHHHHhhCCCCCcEEEEEE
Confidence 99999998754 36899999997
No 93
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.84 E-value=9e-22 Score=112.61 Aligned_cols=82 Identities=24% Similarity=0.425 Sum_probs=70.1
Q ss_pred CCcceeeeeeccC--ccc-----------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCCh
Q psy16649 1 SGENLCTLQIFRG--CFQ-----------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNE 55 (83)
Q Consensus 1 ~GKss~~~~~~~~--~~~-----------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 55 (83)
+|||||+.++... .+. ..+.+++|||+|+++|..+++.|+++++++++|||++++
T Consensus 13 vGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~ 92 (184)
T 2zej_A 13 SGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKG 92 (184)
T ss_dssp SSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGC
T ss_pred CCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcc
Confidence 7999999998763 221 245789999999999999999999999999999999997
Q ss_pred -hHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 56 -KSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 56 -~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
.+|+++..|+.++.... +++|++||||
T Consensus 93 ~~s~~~~~~~~~~~~~~~-~~~piilv~n 120 (184)
T 2zej_A 93 QAEVDAMKPWLFNIKARA-SSSPVILVGT 120 (184)
T ss_dssp HHHHHTHHHHHHHHHHHC-TTCEEEEEEE
T ss_pred hhHHHHHHHHHHHHHhhC-CCCcEEEEEE
Confidence 58999999999998765 5899999997
No 94
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.84 E-value=5.1e-21 Score=106.61 Aligned_cols=83 Identities=30% Similarity=0.558 Sum_probs=74.2
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 61 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~ 61 (83)
+||||++.++..+.+. ..+.+.+|||+|++++..++..+++.++++++|||++++++++.+
T Consensus 14 ~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~ 93 (166)
T 2ce2_X 14 VGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI 93 (166)
T ss_dssp SSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHH
T ss_pred CCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHH
Confidence 7999999998766553 457899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcC-CCceEEEEeC
Q psy16649 62 KNWIRNIEENAS-ANVEKMLLGN 83 (83)
Q Consensus 62 ~~w~~~~~~~~~-~~~piilvgN 83 (83)
..|++++.+... .++|+++|+|
T Consensus 94 ~~~~~~i~~~~~~~~~p~iiv~n 116 (166)
T 2ce2_X 94 HQYREQIKRVKDSDDVPMVLVGN 116 (166)
T ss_dssp HHHHHHHHHHHTCSCCCEEEEEE
T ss_pred HHHHHHHHHhcCCCCCcEEEEEE
Confidence 999999988653 4799999987
No 95
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=2.8e-21 Score=111.04 Aligned_cols=83 Identities=20% Similarity=0.416 Sum_probs=73.5
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 61 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~ 61 (83)
+|||||+.++..+.+. ..+.+.+|||+|++++..++..+++++|++++|||++++++|+.+
T Consensus 19 ~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~ 98 (199)
T 2gf0_A 19 VGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEEL 98 (199)
T ss_dssp SSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTT
T ss_pred CcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHH
Confidence 6999999999876654 356899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcC--CCceEEEEeC
Q psy16649 62 KNWIRNIEENAS--ANVEKMLLGN 83 (83)
Q Consensus 62 ~~w~~~~~~~~~--~~~piilvgN 83 (83)
..|+..+.+... +++|+++|||
T Consensus 99 ~~~~~~i~~~~~~~~~~piilv~n 122 (199)
T 2gf0_A 99 GPIYKLIVQIKGSVEDIPVMLVGN 122 (199)
T ss_dssp HHHHHHHHHHHSCGGGSCEEEEEE
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEE
Confidence 999888877543 4789999997
No 96
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.84 E-value=2e-21 Score=110.37 Aligned_cols=83 Identities=17% Similarity=0.312 Sum_probs=69.9
Q ss_pred CCcceeeeeeccCccc---------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ---------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWI 65 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~---------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~ 65 (83)
+||||++.++..+.+. ..+.+++|||+|+++++.++..+++++|++++|||++++++|+++..|+
T Consensus 29 ~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~ 108 (183)
T 1moz_A 29 AGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKEL 108 (183)
T ss_dssp SSHHHHHHHTCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHH
T ss_pred CCHHHHHHHHhcCCcCccCCcCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHH
Confidence 6999999999876653 2478899999999999999999999999999999999999999999999
Q ss_pred HHHHHhc-CCCceEEEEeC
Q psy16649 66 RNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 66 ~~~~~~~-~~~~piilvgN 83 (83)
.++.+.. ..+.|+++|+|
T Consensus 109 ~~~~~~~~~~~~piilv~n 127 (183)
T 1moz_A 109 HLMLQEEELQDAALLVFAN 127 (183)
T ss_dssp HHHTTSSTTSSCEEEEEEE
T ss_pred HHHHcChhhCCCeEEEEEE
Confidence 8887653 36899999997
No 97
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.83 E-value=6.1e-21 Score=110.06 Aligned_cols=83 Identities=14% Similarity=0.181 Sum_probs=67.7
Q ss_pred CCcceeeeeeccCc--cc-------------------eEEEEEEEeCCCchh-hhcchhhhccCCcEEEEEEECCChhHH
Q psy16649 1 SGENLCTLQIFRGC--FQ-------------------HNFHINYRDTAGQER-FRTITTAYYRGAMGIMLVYDITNEKSF 58 (83)
Q Consensus 1 ~GKss~~~~~~~~~--~~-------------------~~~~l~i~Dt~g~~~-~~~~~~~~~~~~~~~ilv~d~~~~~s~ 58 (83)
+|||||+.++.... |. ..+.+.+|||+|++. ++.+++.|++.++++++|||+++++||
T Consensus 17 vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~ 96 (192)
T 2cjw_A 17 VGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASF 96 (192)
T ss_dssp SSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHHHH
T ss_pred CCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHHHH
Confidence 69999999986321 11 567889999999887 667889999999999999999999999
Q ss_pred HHHHHHHHHHHHhc-CCCceEEEEeC
Q psy16649 59 DNIKNWIRNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 59 ~~~~~w~~~~~~~~-~~~~piilvgN 83 (83)
+.+..|...+.+.. .+++|+++|||
T Consensus 97 ~~~~~~~~~l~~~~~~~~~piilV~N 122 (192)
T 2cjw_A 97 EKASELRIQLRRARQTEDIPIILVGN 122 (192)
T ss_dssp HHHHHHHHHHHHHTTTSCCCEEEEEE
T ss_pred HHHHHHHHHHHHhhCCCCCeEEEEEe
Confidence 99999998887753 35799999997
No 98
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.83 E-value=9.8e-21 Score=115.87 Aligned_cols=82 Identities=17% Similarity=0.423 Sum_probs=73.7
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 61 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~ 61 (83)
+||||++.++..+.+. ..+.+++|||+|++++..++..+++++|++++|||+++++||+++
T Consensus 166 ~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~ 245 (332)
T 2wkq_A 166 VGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHV 245 (332)
T ss_dssp SSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHH
T ss_pred CChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHH
Confidence 6999999888766653 567888999999999999999999999999999999999999999
Q ss_pred H-HHHHHHHHhcCCCceEEEEeC
Q psy16649 62 K-NWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 62 ~-~w~~~~~~~~~~~~piilvgN 83 (83)
. .|++.+.... +++|+++|||
T Consensus 246 ~~~~~~~~~~~~-~~~p~ilv~n 267 (332)
T 2wkq_A 246 RAKWYPEVRHHC-PNTPIILVGT 267 (332)
T ss_dssp HHTHHHHHHHHC-TTSCEEEEEE
T ss_pred HHHHHHHHHhhC-CCCcEEEEEE
Confidence 7 7999998876 4899999997
No 99
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.73 E-value=3e-22 Score=115.94 Aligned_cols=82 Identities=20% Similarity=0.461 Sum_probs=73.5
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 61 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~ 61 (83)
+||||++.++..+.+. ..+.+++|||+|++++..++..+++++|++++|||++++++|+++
T Consensus 41 ~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~ 120 (204)
T 3th5_A 41 VGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENV 120 (204)
Confidence 6999999998877664 457788999999999999999999999999999999999999999
Q ss_pred H-HHHHHHHHhcCCCceEEEEeC
Q psy16649 62 K-NWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 62 ~-~w~~~~~~~~~~~~piilvgN 83 (83)
. .|+..+.... +++|+++|||
T Consensus 121 ~~~~~~~l~~~~-~~~piilv~N 142 (204)
T 3th5_A 121 RAKWYPEVRHHC-PNTPIILVGT 142 (204)
Confidence 7 8998888765 4899999997
No 100
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.83 E-value=8.9e-21 Score=116.36 Aligned_cols=83 Identities=19% Similarity=0.368 Sum_probs=69.3
Q ss_pred CCcceeeeeeccCc--cc------------------eEEEEEEEeCCCchhh-----hcchhhhccCCcEEEEEEECCCh
Q psy16649 1 SGENLCTLQIFRGC--FQ------------------HNFHINYRDTAGQERF-----RTITTAYYRGAMGIMLVYDITNE 55 (83)
Q Consensus 1 ~GKss~~~~~~~~~--~~------------------~~~~l~i~Dt~g~~~~-----~~~~~~~~~~~~~~ilv~d~~~~ 55 (83)
+|||||+.++..+. +. ..+.+++|||+|++++ ..++..++++++++|+|||++++
T Consensus 14 vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~ 93 (307)
T 3r7w_A 14 SGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVEST 93 (307)
T ss_dssp SSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCS
T ss_pred CCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCCh
Confidence 79999999987662 21 2367999999999999 78999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhc--CCCceEEEEeC
Q psy16649 56 KSFDNIKNWIRNIEENA--SANVEKMLLGN 83 (83)
Q Consensus 56 ~s~~~~~~w~~~~~~~~--~~~~piilvgN 83 (83)
+||++++.|.+.+.+.. .+++|+++|||
T Consensus 94 ~s~~~l~~~~~~l~~l~~~~~~~piilv~N 123 (307)
T 3r7w_A 94 EVLKDIEIFAKALKQLRKYSPDAKIFVLLH 123 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred hhHHHHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 99999988765554422 36899999997
No 101
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.82 E-value=1.1e-20 Score=117.02 Aligned_cols=83 Identities=14% Similarity=0.335 Sum_probs=68.6
Q ss_pred CCcceeeeeeccCccc---------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ---------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWI 65 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~---------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~ 65 (83)
+|||||+.++..+.+. ..++++||||+|+++|..++..+++.+|++|+|||++++++|+.+..|+
T Consensus 176 vGKSsLl~~l~~~~~~~~~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~ 255 (329)
T 3o47_A 176 AGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREEL 255 (329)
T ss_dssp SSHHHHHHHTCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHH
T ss_pred ccHHHHHHHHhCCCCCCcccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHH
Confidence 6999999999888765 3468999999999999999999999999999999999999999999887
Q ss_pred HHHHHhc-CCCceEEEEeC
Q psy16649 66 RNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 66 ~~~~~~~-~~~~piilvgN 83 (83)
.++.... .+++|++||||
T Consensus 256 ~~~~~~~~~~~~piilV~N 274 (329)
T 3o47_A 256 MRMLAEDELRDAVLLVFAN 274 (329)
T ss_dssp HHHHTCGGGTTCEEEEEEE
T ss_pred HHHHhhhccCCCeEEEEEE
Confidence 7765533 36899999997
No 102
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.81 E-value=2.8e-20 Score=119.73 Aligned_cols=83 Identities=20% Similarity=0.404 Sum_probs=74.3
Q ss_pred CCcceeeeeeccCccc---------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ---------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWI 65 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~---------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~ 65 (83)
+|||||+.++..+.+. ..+.+.+|||+|+++++.++..+++++|++|+|||++++++|+.+..|+
T Consensus 333 vGKSsLl~~l~~~~~~~~~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~ 412 (497)
T 3lvq_E 333 AGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQEL 412 (497)
T ss_dssp SSHHHHHHHHHHSSCCCCCCCSSEEEEEEESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCCCcCCccceeEEEEEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcchhHHHHHHHHH
Confidence 6999999999877665 4578999999999999999999999999999999999999999999998
Q ss_pred HHHHHhc-CCCceEEEEeC
Q psy16649 66 RNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 66 ~~~~~~~-~~~~piilvgN 83 (83)
.++.+.. ..++|++||||
T Consensus 413 ~~~~~~~~~~~~p~ilv~N 431 (497)
T 3lvq_E 413 HRIINDREMRDAIILIFAN 431 (497)
T ss_dssp HHHHTSGGGTTCEEEEEEE
T ss_pred HHHhhhhhcCCCcEEEEEE
Confidence 8886543 26899999998
No 103
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.80 E-value=8.8e-20 Score=106.11 Aligned_cols=83 Identities=14% Similarity=0.296 Sum_probs=67.7
Q ss_pred CCcceeeeeeccCccc---------------e---EEEEEEEeCCCchhhhc-chhhhccCCcEEEEEEECCChh-HHHH
Q psy16649 1 SGENLCTLQIFRGCFQ---------------H---NFHINYRDTAGQERFRT-ITTAYYRGAMGIMLVYDITNEK-SFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~---------------~---~~~l~i~Dt~g~~~~~~-~~~~~~~~~~~~ilv~d~~~~~-s~~~ 60 (83)
+|||||+.++..+.|. . .+++++|||+|+++|+. +++.|+++++++++|||+++.+ ++..
T Consensus 18 ~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~ 97 (214)
T 2fh5_B 18 SGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKD 97 (214)
T ss_dssp SSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHH
T ss_pred CCHHHHHHHHhCCCcccccCCcceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHH
Confidence 6999999999877765 1 67899999999999998 8999999999999999999964 5666
Q ss_pred HHH-HHHHHHHh--cCCCceEEEEeC
Q psy16649 61 IKN-WIRNIEEN--ASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~-w~~~~~~~--~~~~~piilvgN 83 (83)
+.. |.+.+... ...++|++||||
T Consensus 98 ~~~~~~~~~~~~~~~~~~~piilv~n 123 (214)
T 2fh5_B 98 VAEFLYQVLIDSMALKNSPSLLIACN 123 (214)
T ss_dssp HHHHHHHHHHHHHTSTTCCEEEEEEE
T ss_pred HHHHHHHHHhhhhhcccCCCEEEEEE
Confidence 654 55555442 246799999997
No 104
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.80 E-value=2.5e-19 Score=103.50 Aligned_cols=83 Identities=40% Similarity=0.776 Sum_probs=73.4
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
||||||+.++....+. ..+.+++||++|+++++.++..+++.++++++|||+++..+|++
T Consensus 16 ~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~ 95 (199)
T 2f9l_A 16 VGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYEN 95 (199)
T ss_dssp SSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHT
T ss_pred CCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCHHHHHH
Confidence 7999999998776541 45788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
+..|+.++........|+++++|
T Consensus 96 ~~~~~~~~~~~~~~~~~i~~v~n 118 (199)
T 2f9l_A 96 VERWLKELRDHADSNIVIMLVGN 118 (199)
T ss_dssp HHHHHHHHHHHSCTTCEEEEEEE
T ss_pred HHHHHHHHHHhcCCCCeEEEEEE
Confidence 99999988776556889999986
No 105
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.78 E-value=4.8e-20 Score=110.55 Aligned_cols=58 Identities=16% Similarity=0.286 Sum_probs=51.0
Q ss_pred CCCchhhhcchhhhcc---------------------CCcEEEEEEECCCh--hHHHHHHHHHHHHHHh-cCCCceEEEE
Q psy16649 26 TAGQERFRTITTAYYR---------------------GAMGIMLVYDITNE--KSFDNIKNWIRNIEEN-ASANVEKMLL 81 (83)
Q Consensus 26 t~g~~~~~~~~~~~~~---------------------~~~~~ilv~d~~~~--~s~~~~~~w~~~~~~~-~~~~~piilv 81 (83)
++|+++|..+++.|++ ++|++|+|||++++ +||+.+..|+.++.+. ..+++|++||
T Consensus 125 ~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV 204 (255)
T 3c5h_A 125 RAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVV 204 (255)
T ss_dssp HHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEE
Confidence 8899999999999998 89999999999999 9999999999999775 3468999999
Q ss_pred eC
Q psy16649 82 GN 83 (83)
Q Consensus 82 gN 83 (83)
||
T Consensus 205 ~N 206 (255)
T 3c5h_A 205 LT 206 (255)
T ss_dssp EE
T ss_pred EE
Confidence 97
No 106
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.77 E-value=6.1e-19 Score=101.52 Aligned_cols=83 Identities=39% Similarity=0.762 Sum_probs=73.0
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
||||||+.++....+. ..+.+++||++|++++..++..+++.++++++|||+++..+|++
T Consensus 40 ~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~ 119 (191)
T 1oix_A 40 VGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYEN 119 (191)
T ss_dssp SSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCHHHHHT
T ss_pred CCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcCHHHHHH
Confidence 7999999998766552 45678889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 61 IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvgN 83 (83)
+..|++++.+....+.|+++++|
T Consensus 120 ~~~~~~~~~~~~~~~~~i~~v~n 142 (191)
T 1oix_A 120 VERWLKELRDHADSNIVIMLVGN 142 (191)
T ss_dssp HHHHHHHHHHHSCTTCEEEEEEE
T ss_pred HHHHHHHHHHhcCCCCcEEEEEE
Confidence 99999988776556889999986
No 107
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.77 E-value=1.6e-18 Score=109.83 Aligned_cols=66 Identities=17% Similarity=0.234 Sum_probs=61.3
Q ss_pred EEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCC----------hhHHHHHHHHHHHHHHhc-CCCceEEEEeC
Q psy16649 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITN----------EKSFDNIKNWIRNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 18 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~s~~~~~~w~~~~~~~~-~~~~piilvgN 83 (83)
.++++||||+||++++.+|..||++++++|+|||+++ .++|+++..|++++.+.. .+++|++||||
T Consensus 216 ~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgN 292 (402)
T 1azs_C 216 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLN 292 (402)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEE
T ss_pred CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEE
Confidence 4899999999999999999999999999999999999 999999999999987753 47899999998
No 108
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.76 E-value=1.1e-19 Score=105.92 Aligned_cols=83 Identities=14% Similarity=0.270 Sum_probs=72.4
Q ss_pred CCcceeeeeeccCccce--------------EEEEEEEeCCCchhhhcchhhhccC----CcEEEEEEECC-ChhHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQH--------------NFHINYRDTAGQERFRTITTAYYRG----AMGIMLVYDIT-NEKSFDNI 61 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~~--------------~~~l~i~Dt~g~~~~~~~~~~~~~~----~~~~ilv~d~~-~~~s~~~~ 61 (83)
+||||++.++..+.+.. .+.+.+|||+|+++++..+..|++. ++++++|||++ ++++|..+
T Consensus 23 ~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~ 102 (218)
T 1nrj_B 23 SGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTT 102 (218)
T ss_dssp SSHHHHHHHHHHSSCCCBCCCSSCEEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHH
T ss_pred CCHHHHHHHHhcCCCCCeeeecCceEEEEeeCceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHH
Confidence 69999999998876542 2478999999999999999999988 89999999999 99999999
Q ss_pred HHHHHHHHHh----cCCCceEEEEeC
Q psy16649 62 KNWIRNIEEN----ASANVEKMLLGN 83 (83)
Q Consensus 62 ~~w~~~~~~~----~~~~~piilvgN 83 (83)
..|+.++... .++++|+++|+|
T Consensus 103 ~~~~~~~~~~~~~~~~~~~p~ilv~n 128 (218)
T 1nrj_B 103 AEFLVDILSITESSCENGIDILIACN 128 (218)
T ss_dssp HHHHHHHHHHHHHHSTTCCCEEEEEE
T ss_pred HHHHHHHHhcccccccCCCCEEEEEE
Confidence 9998888664 346899999997
No 109
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.76 E-value=1.1e-18 Score=109.10 Aligned_cols=67 Identities=15% Similarity=0.157 Sum_probs=59.4
Q ss_pred eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECC----------ChhHHHHHHHHHHHHHHhc-CCCceEEEEeC
Q psy16649 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDIT----------NEKSFDNIKNWIRNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~----------~~~s~~~~~~w~~~~~~~~-~~~~piilvgN 83 (83)
+.++++||||+||++|+.+|..||++++++|+|||++ +.++|+++..|++++.+.. .+++|++||||
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgN 258 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 258 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEE
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEE
Confidence 4689999999999999999999999999999999999 8899999999999887643 36899999998
No 110
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.75 E-value=1.7e-19 Score=103.33 Aligned_cols=83 Identities=14% Similarity=0.270 Sum_probs=70.9
Q ss_pred CCcceeeeeeccCccce--------------EEEEEEEeCCCchhhhcchhhhccC----CcEEEEEEECC-ChhHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQH--------------NFHINYRDTAGQERFRTITTAYYRG----AMGIMLVYDIT-NEKSFDNI 61 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~~--------------~~~l~i~Dt~g~~~~~~~~~~~~~~----~~~~ilv~d~~-~~~s~~~~ 61 (83)
+||||++.++..+.+.. .+.+.+|||+|++++...+..+++. ++++++|||++ ++++|..+
T Consensus 59 ~GKSsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~ 138 (193)
T 2ged_A 59 SGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTT 138 (193)
T ss_dssp SSHHHHHHHHHHSSCC------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHH
T ss_pred CCHHHHHHHHhcCCCCcccccCCCceeeeecCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHH
Confidence 79999999998876542 3468899999999999888888887 89999999999 99999999
Q ss_pred HHHHHHHHHh----cCCCceEEEEeC
Q psy16649 62 KNWIRNIEEN----ASANVEKMLLGN 83 (83)
Q Consensus 62 ~~w~~~~~~~----~~~~~piilvgN 83 (83)
..|+.++... ..+++|+++|||
T Consensus 139 ~~~~~~~~~~~~~~~~~~~p~ilv~n 164 (193)
T 2ged_A 139 AEFLVDILSITESSCENGIDILIACN 164 (193)
T ss_dssp HHHHHHHHHHHHHHSTTCCCEEEEEE
T ss_pred HHHHHHHHhhhhhccccCCCEEEEEE
Confidence 9998887654 336899999997
No 111
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.73 E-value=7.5e-18 Score=104.82 Aligned_cols=67 Identities=15% Similarity=0.233 Sum_probs=60.7
Q ss_pred eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECC----------ChhHHHHHHHHHHHHHHhc-CCCceEEEEeC
Q psy16649 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDIT----------NEKSFDNIKNWIRNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~----------~~~s~~~~~~w~~~~~~~~-~~~~piilvgN 83 (83)
..++++||||+||++++.+|..||++++++|+|||++ +.++|++...|++.+.... ..++|++|+||
T Consensus 159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~N 236 (340)
T 4fid_A 159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLN 236 (340)
T ss_dssp SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEE
T ss_pred eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEE
Confidence 4578999999999999999999999999999999999 7899999999988887643 36899999998
No 112
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.71 E-value=2e-17 Score=103.40 Aligned_cols=66 Identities=17% Similarity=0.273 Sum_probs=59.8
Q ss_pred EEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCC----------hhHHHHHHHHHHHHHHhc-CCCceEEEEeC
Q psy16649 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITN----------EKSFDNIKNWIRNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 18 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~s~~~~~~w~~~~~~~~-~~~~piilvgN 83 (83)
.+++++|||+||++++.+|..||++++++|+|||+++ .++|++...|++.+.+.. ..++|++|+||
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~N 268 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLN 268 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEE
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEE
Confidence 5889999999999999999999999999999999999 578999999999887642 26899999998
No 113
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.69 E-value=5.9e-18 Score=96.02 Aligned_cols=82 Identities=15% Similarity=0.097 Sum_probs=63.3
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhc------c--hhhhccCCcEEEEEEECC
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRT------I--TTAYYRGAMGIMLVYDIT 53 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~------~--~~~~~~~~~~~ilv~d~~ 53 (83)
+|||||+.++....+. ....+++|||+|++++.. + ...+++++|++++|||++
T Consensus 15 ~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~ 94 (172)
T 2gj8_A 15 AGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGT 94 (172)
T ss_dssp SSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETT
T ss_pred CCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECC
Confidence 6999999998765431 124689999999865321 1 124689999999999999
Q ss_pred ChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 54 NEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 54 ~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
++.|++ ...|++++.+....++|+++|||
T Consensus 95 ~~~s~~-~~~~~~~~~~~~~~~~p~ilv~N 123 (172)
T 2gj8_A 95 TTDAVD-PAEIWPEFIARLPAKLPITVVRN 123 (172)
T ss_dssp TCCCCS-HHHHCHHHHHHSCTTCCEEEEEE
T ss_pred CCCCHH-HHHHHHHHHHhcccCCCEEEEEE
Confidence 999987 45788888776656899999997
No 114
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.69 E-value=4e-18 Score=96.24 Aligned_cols=76 Identities=21% Similarity=0.243 Sum_probs=60.5
Q ss_pred CCcceeeeeeccCccc------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCC---hhHHH
Q psy16649 1 SGENLCTLQIFRGCFQ------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITN---EKSFD 59 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~---~~s~~ 59 (83)
+||||++.++..+.+. ....+.+|||+|++++..++..+++.+|++++|||+++ +++++
T Consensus 19 ~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~ 98 (178)
T 2lkc_A 19 HGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVE 98 (178)
T ss_dssp TTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHHH
T ss_pred CCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHH
Confidence 7999999998765553 23578899999999999999999999999999999998 44444
Q ss_pred HHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 60 NIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 60 ~~~~w~~~~~~~~~~~~piilvgN 83 (83)
.+. .....++|+++|||
T Consensus 99 ~l~-------~~~~~~~p~ilv~n 115 (178)
T 2lkc_A 99 AIN-------HAKAANVPIIVAIN 115 (178)
T ss_dssp HHH-------HHGGGSCCEEEEEE
T ss_pred HHH-------HHHhCCCCEEEEEE
Confidence 332 22235789999987
No 115
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.69 E-value=7.9e-17 Score=99.83 Aligned_cols=67 Identities=21% Similarity=0.269 Sum_probs=58.4
Q ss_pred eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECC----------ChhHHHHHHHHHHHHHHhc-CCCceEEEEeC
Q psy16649 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDIT----------NEKSFDNIKNWIRNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~----------~~~s~~~~~~w~~~~~~~~-~~~~piilvgN 83 (83)
+.+++++|||+||++++.+|..||++++++|+|||++ +.++|++...|++.+.... ..++|++|+||
T Consensus 165 ~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~N 242 (327)
T 3ohm_A 165 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLN 242 (327)
T ss_dssp TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEE
T ss_pred eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEE
Confidence 4589999999999999999999999999999999665 7788888888888886543 36899999998
No 116
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.67 E-value=7.8e-17 Score=90.63 Aligned_cols=77 Identities=13% Similarity=0.032 Sum_probs=60.2
Q ss_pred CCcceeeeeeccCccc------------------eEEEEEEEeCCCchhhh------cchhhhcc--CCcEEEEEEECCC
Q psy16649 1 SGENLCTLQIFRGCFQ------------------HNFHINYRDTAGQERFR------TITTAYYR--GAMGIMLVYDITN 54 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~------------------~~~~l~i~Dt~g~~~~~------~~~~~~~~--~~~~~ilv~d~~~ 54 (83)
+|||||+.++..+.+. ....+++|||+|++++. .+...|++ +++++++|+|.++
T Consensus 14 vGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~ 93 (165)
T 2wji_A 14 VGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA 93 (165)
T ss_dssp SSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTC
T ss_pred CCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCc
Confidence 6999999998765432 23679999999999875 45577776 8999999999998
Q ss_pred hhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 55 EKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 55 ~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
.++ ...|+.++.+ .+.|+++|||
T Consensus 94 ~~~---~~~~~~~~~~---~~~p~ilv~n 116 (165)
T 2wji_A 94 LER---NLYLTLQLME---MGANLLLALN 116 (165)
T ss_dssp HHH---HHHHHHHHHH---TTCCEEEEEE
T ss_pred hhH---hHHHHHHHHh---cCCCEEEEEE
Confidence 654 4568777765 3689999997
No 117
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.67 E-value=1.3e-16 Score=99.99 Aligned_cols=67 Identities=19% Similarity=0.235 Sum_probs=53.8
Q ss_pred eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCC----------hhHHHHHHHHHHHHHHhc-CCCceEEEEeC
Q psy16649 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITN----------EKSFDNIKNWIRNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~s~~~~~~w~~~~~~~~-~~~~piilvgN 83 (83)
..+++++|||+||++++..|..||++++++|+|||+++ .++|++...|++.+.+.. ..++|++|+||
T Consensus 199 ~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~N 276 (362)
T 1zcb_A 199 KNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLN 276 (362)
T ss_dssp TTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEE
T ss_pred CCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEE
Confidence 35889999999999999999999999999999999999 789999999998887642 36899999998
No 118
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.65 E-value=1e-16 Score=94.26 Aligned_cols=81 Identities=21% Similarity=0.144 Sum_probs=61.0
Q ss_pred CCcceeeeeeccCccc------------------eEEEEEEEeCCCc------hh----hhcchhhhccCCcEEEEEEEC
Q psy16649 1 SGENLCTLQIFRGCFQ------------------HNFHINYRDTAGQ------ER----FRTITTAYYRGAMGIMLVYDI 52 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~------------------~~~~l~i~Dt~g~------~~----~~~~~~~~~~~~~~~ilv~d~ 52 (83)
+|||||+.++..+.+. ..+.+.+|||+|+ ++ +..+ ..++..++++++|||+
T Consensus 40 vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~v~d~ 118 (228)
T 2qu8_A 40 VGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTI-TALAHINGVILFIIDI 118 (228)
T ss_dssp SSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHH-HHHHTSSEEEEEEEET
T ss_pred CCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHH-HHhhccccEEEEEEec
Confidence 6999999999887663 1267999999999 44 3333 3467889999999999
Q ss_pred CChhHHHH--HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 53 TNEKSFDN--IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 53 ~~~~s~~~--~~~w~~~~~~~~~~~~piilvgN 83 (83)
+++.+|+. ...|+..+.... +++|+++|||
T Consensus 119 ~~~~s~~~~~~~~~~~~l~~~~-~~~piilv~n 150 (228)
T 2qu8_A 119 SEQCGLTIKEQINLFYSIKSVF-SNKSIVIGFN 150 (228)
T ss_dssp TCTTSSCHHHHHHHHHHHHTCC--CCCEEEEEE
T ss_pred ccccCcchHHHHHHHHHHHHhh-cCCcEEEEEe
Confidence 99998863 235666665443 4899999997
No 119
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.63 E-value=7.3e-17 Score=104.92 Aligned_cols=79 Identities=20% Similarity=0.352 Sum_probs=66.8
Q ss_pred CCcceeeeeeccCccc----------------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEEC
Q psy16649 1 SGENLCTLQIFRGCFQ----------------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDI 52 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~----------------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~ 52 (83)
+|||||+.++..+.|. ..+.+.+|||+|++.|..++..++++++++|+|||+
T Consensus 52 vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~ 131 (535)
T 3dpu_A 52 AGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDS 131 (535)
T ss_dssp SSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECG
T ss_pred CCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeC
Confidence 6999999999887642 147899999999999999999999999999999998
Q ss_pred CChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 53 TNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 53 ~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
++. +.+..|++++.+.. ++.|+++|||
T Consensus 132 s~~---~~~~~~~~~l~~~~-~~~pvilV~N 158 (535)
T 3dpu_A 132 RTD---SNKHYWLRHIEKYG-GKSPVIVVMN 158 (535)
T ss_dssp GGG---GGHHHHHHHHHHHS-SSCCEEEEEC
T ss_pred CCc---hhHHHHHHHHHHhC-CCCCEEEEEE
Confidence 765 56788999998876 5899999998
No 120
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.63 E-value=2.4e-17 Score=93.83 Aligned_cols=83 Identities=16% Similarity=0.234 Sum_probs=67.9
Q ss_pred CCcceeeeeeccCccc-----------eEE---EEEEEeCCC-----------chhhhcchhhhccC-CcEEEEEEECCC
Q psy16649 1 SGENLCTLQIFRGCFQ-----------HNF---HINYRDTAG-----------QERFRTITTAYYRG-AMGIMLVYDITN 54 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-----------~~~---~l~i~Dt~g-----------~~~~~~~~~~~~~~-~~~~ilv~d~~~ 54 (83)
+||||++.++..+.+. ..+ .+.+|||+| ++++..++..|+++ +++++++|++.+
T Consensus 12 ~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d 91 (190)
T 2cxx_A 12 VGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVD 91 (190)
T ss_dssp SSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEETTEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEE
T ss_pred CCHHHHHHHHhCcCCccCCCCCccceeEEEecCCEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEc
Confidence 6999999999887765 122 578999999 88999999999998 999999999999
Q ss_pred hhHHHHH-HHHHHH--------HHH-hcCCCceEEEEeC
Q psy16649 55 EKSFDNI-KNWIRN--------IEE-NASANVEKMLLGN 83 (83)
Q Consensus 55 ~~s~~~~-~~w~~~--------~~~-~~~~~~piilvgN 83 (83)
.++|+++ +.|.+. +.. ....++|+++|||
T Consensus 92 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~n 130 (190)
T 2cxx_A 92 GKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVN 130 (190)
T ss_dssp TTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEE
T ss_pred chhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEee
Confidence 9999988 678753 222 2236899999997
No 121
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.61 E-value=2.1e-16 Score=87.82 Aligned_cols=79 Identities=10% Similarity=0.029 Sum_probs=57.9
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchh-------hhcchhhhccCCcEEEEEEECCC
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQER-------FRTITTAYYRGAMGIMLVYDITN 54 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~-------~~~~~~~~~~~~~~~ilv~d~~~ 54 (83)
+||||++.++..+.+. ....+.+|||+|+++ +...+..+++.++++++|+|.++
T Consensus 12 ~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~ 91 (161)
T 2dyk_A 12 VGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRA 91 (161)
T ss_dssp SSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSS
T ss_pred CCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCC
Confidence 6999999999876532 224788999999987 45667788999999999999998
Q ss_pred hhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 55 EKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 55 ~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
+.+... .|+.+.... .++|+++|||
T Consensus 92 ~~~~~~--~~~~~~~~~--~~~p~ilv~n 116 (161)
T 2dyk_A 92 ELTQAD--YEVAEYLRR--KGKPVILVAT 116 (161)
T ss_dssp CCCHHH--HHHHHHHHH--HTCCEEEEEE
T ss_pred cccHhH--HHHHHHHHh--cCCCEEEEEE
Confidence 644332 232222222 4688999987
No 122
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.59 E-value=4.8e-16 Score=88.48 Aligned_cols=77 Identities=13% Similarity=0.062 Sum_probs=60.2
Q ss_pred CCcceeeeeeccCccc------------------eEEEEEEEeCCCchhhh------cchhhhcc--CCcEEEEEEECCC
Q psy16649 1 SGENLCTLQIFRGCFQ------------------HNFHINYRDTAGQERFR------TITTAYYR--GAMGIMLVYDITN 54 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~------------------~~~~l~i~Dt~g~~~~~------~~~~~~~~--~~~~~ilv~d~~~ 54 (83)
+|||||+.++..+.+. ....+++|||+|++++. .++..|++ .++++++|+|.++
T Consensus 18 vGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~ 97 (188)
T 2wjg_A 18 VGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA 97 (188)
T ss_dssp SSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred CCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchh
Confidence 6999999998875331 23578999999999875 45677775 4999999999875
Q ss_pred hhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 55 EKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 55 ~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
+++...|+.++.+ .++|+++|+|
T Consensus 98 ---~~~~~~~~~~~~~---~~~piilv~n 120 (188)
T 2wjg_A 98 ---LERNLYLTLQLME---MGANLLLALN 120 (188)
T ss_dssp ---HHHHHHHHHHHHT---TTCCEEEEEE
T ss_pred ---HHHHHHHHHHHHh---cCCCEEEEEE
Confidence 5667778877764 4789999987
No 123
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.59 E-value=3.9e-16 Score=89.29 Aligned_cols=79 Identities=10% Similarity=0.217 Sum_probs=60.5
Q ss_pred CCcceeeeeeccCccc-------------eE----EEEEEEeCCC----------chhhhcchhhhccCC---cEEEEEE
Q psy16649 1 SGENLCTLQIFRGCFQ-------------HN----FHINYRDTAG----------QERFRTITTAYYRGA---MGIMLVY 50 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------~~----~~l~i~Dt~g----------~~~~~~~~~~~~~~~---~~~ilv~ 50 (83)
+||||++.++..+.|. .. .++.+|||+| ++++..++..+++.+ +++++|+
T Consensus 34 ~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 113 (195)
T 1svi_A 34 VGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIV 113 (195)
T ss_dssp SSHHHHHHHHHTC-------------CCEEEEEETTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred CCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECCcEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEE
Confidence 6999999999877643 11 1478999999 899999999999888 9999999
Q ss_pred ECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 51 DITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 51 d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
|++++.++.... +.+.+.+ .++|+++|+|
T Consensus 114 d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~n 142 (195)
T 1svi_A 114 DLRHAPSNDDVQ-MYEFLKY---YGIPVIVIAT 142 (195)
T ss_dssp ETTSCCCHHHHH-HHHHHHH---TTCCEEEEEE
T ss_pred ECCCCCCHHHHH-HHHHHHH---cCCCEEEEEE
Confidence 999988887653 1222222 5789999987
No 124
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.56 E-value=1.9e-15 Score=92.83 Aligned_cols=80 Identities=16% Similarity=0.113 Sum_probs=67.5
Q ss_pred CCcceeeeeeccCccc-------------------e-EEEEEEEeCCCchh----------hhcchhhhccCCcEEEEEE
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------H-NFHINYRDTAGQER----------FRTITTAYYRGAMGIMLVY 50 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~-~~~l~i~Dt~g~~~----------~~~~~~~~~~~~~~~ilv~ 50 (83)
+|||||+.++....+. . ...+.+|||+|+.+ +......+++.+|++++|+
T Consensus 21 vGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~Vv 100 (308)
T 3iev_A 21 VGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMI 100 (308)
T ss_dssp SSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEE
T ss_pred CcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEE
Confidence 6999999998876653 2 67899999999844 3467788999999999999
Q ss_pred ECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 51 DITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 51 d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
|.++..+++....|++.+.. .+.|+++|+|
T Consensus 101 D~~~~~~~~~~~~~~~~l~~---~~~pvilV~N 130 (308)
T 3iev_A 101 DATEGWRPRDEEIYQNFIKP---LNKPVIVVIN 130 (308)
T ss_dssp ETTTBSCHHHHHHHHHHTGG---GCCCEEEEEE
T ss_pred eCCCCCCchhHHHHHHHHHh---cCCCEEEEEE
Confidence 99999999998888888775 3689999987
No 125
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.56 E-value=3.9e-15 Score=91.28 Aligned_cols=80 Identities=15% Similarity=0.221 Sum_probs=61.9
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchh--------hhcchhhhccCCcEEEEEEECC
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQER--------FRTITTAYYRGAMGIMLVYDIT 53 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~--------~~~~~~~~~~~~~~~ilv~d~~ 53 (83)
+|||||+.++....+. ....+.+|||+|+.+ +......+++.+|++++|+|.+
T Consensus 18 vGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~ 97 (301)
T 1wf3_A 18 VGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLR 97 (301)
T ss_dssp SSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETT
T ss_pred CCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECC
Confidence 6999999998876552 246899999999876 5566778999999999999999
Q ss_pred ChhHHHHHHHHH-HHHHHhcCCCceEEEEeC
Q psy16649 54 NEKSFDNIKNWI-RNIEENASANVEKMLLGN 83 (83)
Q Consensus 54 ~~~s~~~~~~w~-~~~~~~~~~~~piilvgN 83 (83)
++.+.. ..|+ +.+++.. ++.|+++|+|
T Consensus 98 ~~~~~~--~~~i~~~l~~~~-~~~p~ilV~N 125 (301)
T 1wf3_A 98 HPPTPE--DELVARALKPLV-GKVPILLVGN 125 (301)
T ss_dssp SCCCHH--HHHHHHHHGGGT-TTSCEEEEEE
T ss_pred CCCChH--HHHHHHHHHhhc-CCCCEEEEEE
Confidence 875544 3454 5555443 5799999987
No 126
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.53 E-value=2.7e-15 Score=90.15 Aligned_cols=82 Identities=15% Similarity=0.141 Sum_probs=63.8
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcchhhhcc---------CCcEEEEEEEC
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTITTAYYR---------GAMGIMLVYDI 52 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~---------~~~~~ilv~d~ 52 (83)
+||||++.++..+.+. ....+.+|||+|++++....+.+++ +++++++|+++
T Consensus 47 ~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~ 126 (262)
T 3def_A 47 VGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRL 126 (262)
T ss_dssp SSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEES
T ss_pred CCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 6999999998876642 3358899999999988776666665 88999999999
Q ss_pred CChhHHHHH-HHHHHHHHHhcCCC--ceEEEEeC
Q psy16649 53 TNEKSFDNI-KNWIRNIEENASAN--VEKMLLGN 83 (83)
Q Consensus 53 ~~~~s~~~~-~~w~~~~~~~~~~~--~piilvgN 83 (83)
+... +... ..|++.+.+..+.+ .|+++|+|
T Consensus 127 d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~n 159 (262)
T 3def_A 127 DVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLT 159 (262)
T ss_dssp SCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEE
T ss_pred CCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEe
Confidence 8766 5544 47888888766544 38899886
No 127
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.52 E-value=4.2e-15 Score=89.31 Aligned_cols=77 Identities=12% Similarity=0.005 Sum_probs=59.1
Q ss_pred CCcceeeeeeccCccc------------------eEEEEEEEeCCCchhhhc----------chhhhc--cCCcEEEEEE
Q psy16649 1 SGENLCTLQIFRGCFQ------------------HNFHINYRDTAGQERFRT----------ITTAYY--RGAMGIMLVY 50 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~------------------~~~~l~i~Dt~g~~~~~~----------~~~~~~--~~~~~~ilv~ 50 (83)
|||||++.++....+. ....+.+|||+|++.+.. +...|+ +++|++++|+
T Consensus 12 ~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~Vv 91 (256)
T 3iby_A 12 CGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVI 91 (256)
T ss_dssp SSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEE
T ss_pred CCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEe
Confidence 7999999998776442 234788999999987754 567778 8999999999
Q ss_pred ECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 51 DITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 51 d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
|.++.+++..+..|+.+ .+.|+++|+|
T Consensus 92 Das~~~~~~~l~~~l~~------~~~pvilv~N 118 (256)
T 3iby_A 92 DACHLERHLYLTSQLFE------LGKPVVVALN 118 (256)
T ss_dssp EGGGHHHHHHHHHHHTT------SCSCEEEEEE
T ss_pred eCCCchhHHHHHHHHHH------cCCCEEEEEE
Confidence 99998776655444322 3689999987
No 128
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.51 E-value=2.2e-14 Score=87.82 Aligned_cols=74 Identities=18% Similarity=0.132 Sum_probs=62.5
Q ss_pred eeeeeeccCccc-------------eE----EEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChh-HHHHHHHHHH
Q psy16649 5 LCTLQIFRGCFQ-------------HN----FHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEK-SFDNIKNWIR 66 (83)
Q Consensus 5 s~~~~~~~~~~~-------------~~----~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~-s~~~~~~w~~ 66 (83)
+++.++..+.|. .. -+++|||+ ||+|+.+++.|++++|++|+|||+++++ +|+.++.|+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~~~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~ 109 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVEYTPDETGSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLV 109 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEEEECCCSSSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEEEEEcCCCeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHH
Confidence 567777766663 01 15789999 9999999999999999999999999998 7999999999
Q ss_pred HHHHhcCCCceEEEEeC
Q psy16649 67 NIEENASANVEKMLLGN 83 (83)
Q Consensus 67 ~~~~~~~~~~piilvgN 83 (83)
+++. .++|++||||
T Consensus 110 ~~~~---~~~piilv~N 123 (301)
T 1u0l_A 110 LAEK---NELETVMVIN 123 (301)
T ss_dssp HHHH---TTCEEEEEEC
T ss_pred HHHH---CCCCEEEEEe
Confidence 8764 4799999998
No 129
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.51 E-value=5.6e-15 Score=84.18 Aligned_cols=77 Identities=13% Similarity=0.250 Sum_probs=59.4
Q ss_pred CCcceeeeeeccCccc----------------eEEEEEEEeCCC----------chhhhcchhhhccCC---cEEEEEEE
Q psy16649 1 SGENLCTLQIFRGCFQ----------------HNFHINYRDTAG----------QERFRTITTAYYRGA---MGIMLVYD 51 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~----------------~~~~l~i~Dt~g----------~~~~~~~~~~~~~~~---~~~ilv~d 51 (83)
+||||++.++..+.+. ....+.+|||+| ++.+..+++.|++.+ +++++|+|
T Consensus 34 ~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d 113 (195)
T 3pqc_A 34 VGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVD 113 (195)
T ss_dssp SSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEE
T ss_pred CCHHHHHHHHHcCccccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEec
Confidence 7999999998877533 123578999999 888999999999877 99999999
Q ss_pred CCChhH--HHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 52 ITNEKS--FDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 52 ~~~~~s--~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
.++..+ +..+..|+... ++|+++|+|
T Consensus 114 ~~~~~~~~~~~~~~~~~~~------~~p~i~v~n 141 (195)
T 3pqc_A 114 GRIPPQDSDLMMVEWMKSL------NIPFTIVLT 141 (195)
T ss_dssp TTSCCCHHHHHHHHHHHHT------TCCEEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHc------CCCEEEEEE
Confidence 987644 34444554432 689999987
No 130
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.50 E-value=1.5e-14 Score=86.96 Aligned_cols=77 Identities=19% Similarity=0.130 Sum_probs=59.5
Q ss_pred CCcceeeeeeccCccc------------------eEEEEEEEeCCCchhhhc------chhhhc--cCCcEEEEEEECCC
Q psy16649 1 SGENLCTLQIFRGCFQ------------------HNFHINYRDTAGQERFRT------ITTAYY--RGAMGIMLVYDITN 54 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~------------------~~~~l~i~Dt~g~~~~~~------~~~~~~--~~~~~~ilv~d~~~ 54 (83)
|||||++.++....+. ....+.+|||+|++++.. +...|+ .++|++++|+|.++
T Consensus 16 vGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~ 95 (258)
T 3a1s_A 16 VGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVN 95 (258)
T ss_dssp SSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTS
T ss_pred CCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCc
Confidence 7999999998875543 246899999999988765 336666 58999999999999
Q ss_pred hhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 55 EKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 55 ~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
.++.. .|..++.+ .++|+++|+|
T Consensus 96 ~~~~~---~~~~~l~~---~~~pvilv~N 118 (258)
T 3a1s_A 96 PEQSL---YLLLEILE---MEKKVILAMT 118 (258)
T ss_dssp CHHHH---HHHHHHHT---TTCCEEEEEE
T ss_pred hhhHH---HHHHHHHh---cCCCEEEEEE
Confidence 76543 46666554 3689999987
No 131
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.47 E-value=1.7e-14 Score=93.13 Aligned_cols=81 Identities=14% Similarity=0.082 Sum_probs=50.2
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcch--------hhhccCCcEEEEEEECC
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTIT--------TAYYRGAMGIMLVYDIT 53 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~--------~~~~~~~~~~ilv~d~~ 53 (83)
+||||++.++...... ..+.+.+|||+|++++.... ..+++.+|++++|+|.+
T Consensus 244 vGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s 323 (476)
T 3gee_A 244 AGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLG 323 (476)
T ss_dssp SSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CCCSSCSEEEEEEETT
T ss_pred CCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECC
Confidence 6999999998876421 23578999999998776443 44789999999999999
Q ss_pred ChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 54 NEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 54 ~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
++.++++++.+.+.+... .+.|+++|+|
T Consensus 324 ~~~s~~~~~~~~~~l~~l--~~~piIvV~N 351 (476)
T 3gee_A 324 TERLDDELTEIRELKAAH--PAAKFLTVAN 351 (476)
T ss_dssp TCSSGGGHHHHHHHHHHC--TTSEEEEEEE
T ss_pred CCcchhhhHHHHHHHHhc--CCCCEEEEEE
Confidence 999887554444333332 2789999987
No 132
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.47 E-value=7.3e-15 Score=93.66 Aligned_cols=79 Identities=14% Similarity=0.079 Sum_probs=63.8
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCc----------hhhhcchh-hhccCCcEEEEEE
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQ----------ERFRTITT-AYYRGAMGIMLVY 50 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~----------~~~~~~~~-~~~~~~~~~ilv~ 50 (83)
+|||||+.++..+.+. ....+++|||+|+ |+|..++. .+++.+|++++|+
T Consensus 186 vGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~ 265 (436)
T 2hjg_A 186 VGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVL 265 (436)
T ss_dssp SSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEE
T ss_pred CCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEE
Confidence 6999999999876542 2246899999998 77777765 4889999999999
Q ss_pred ECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 51 DITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 51 d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
|.++..+++.. .|...+.+ .+.|+++|+|
T Consensus 266 D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~N 294 (436)
T 2hjg_A 266 DGEEGIIEQDK-RIAGYAHE---AGKAVVIVVN 294 (436)
T ss_dssp ETTTCCCHHHH-HHHHHHHH---TTCEEEEEEE
T ss_pred cCCcCCcHHHH-HHHHHHHH---cCCcEEEEEE
Confidence 99999998886 47766653 4689999987
No 133
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.47 E-value=3.3e-14 Score=86.04 Aligned_cols=77 Identities=18% Similarity=0.118 Sum_probs=56.5
Q ss_pred CCcceeeeeeccCccc------------------eEEEEEEEeCCCchhhhc----------chhhhc--cCCcEEEEEE
Q psy16649 1 SGENLCTLQIFRGCFQ------------------HNFHINYRDTAGQERFRT----------ITTAYY--RGAMGIMLVY 50 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~------------------~~~~l~i~Dt~g~~~~~~----------~~~~~~--~~~~~~ilv~ 50 (83)
|||||++.++....+. ....+.+|||+|++++.. +...|+ +++|++++|+
T Consensus 14 ~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~Vv 93 (274)
T 3i8s_A 14 SGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVV 93 (274)
T ss_dssp SSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEE
T ss_pred CCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEe
Confidence 7999999998876543 234678999999988762 233444 7999999999
Q ss_pred ECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 51 DITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 51 d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
|.++.++...+..| +.+. ++|+++|+|
T Consensus 94 D~~~~~~~~~~~~~---l~~~---~~p~ivv~N 120 (274)
T 3i8s_A 94 DASNLERNLYLTLQ---LLEL---GIPCIVALN 120 (274)
T ss_dssp EGGGHHHHHHHHHH---HHHH---TCCEEEEEE
T ss_pred cCCChHHHHHHHHH---HHhc---CCCEEEEEE
Confidence 99987665544444 3332 689999987
No 134
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.45 E-value=2.7e-14 Score=86.50 Aligned_cols=77 Identities=19% Similarity=0.133 Sum_probs=59.4
Q ss_pred CCcceeeeeeccCccc-----------e------EEEEEEEeCCCchhhh------cchhhhcc--CCcEEEEEEECCCh
Q psy16649 1 SGENLCTLQIFRGCFQ-----------H------NFHINYRDTAGQERFR------TITTAYYR--GAMGIMLVYDITNE 55 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-----------~------~~~l~i~Dt~g~~~~~------~~~~~~~~--~~~~~ilv~d~~~~ 55 (83)
||||||+.++....+. . ...+++|||+|++++. .+...|+. ++|++++|+|.++.
T Consensus 14 vGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~ 93 (272)
T 3b1v_A 14 SGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNL 93 (272)
T ss_dssp SSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTTCTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGH
T ss_pred CCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEecCCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCch
Confidence 7999999998765321 1 3479999999999876 46677776 69999999999987
Q ss_pred hHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 56 KSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 56 ~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
+++ ..|..++.+ .++|+++|+|
T Consensus 94 e~~---~~~~~~l~~---~~~p~ilv~N 115 (272)
T 3b1v_A 94 ERN---LYLTTQLIE---TGIPVTIALN 115 (272)
T ss_dssp HHH---HHHHHHHHH---TCSCEEEEEE
T ss_pred HhH---HHHHHHHHh---cCCCEEEEEE
Confidence 654 456666654 4789999987
No 135
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.44 E-value=1.4e-13 Score=87.08 Aligned_cols=63 Identities=13% Similarity=0.088 Sum_probs=54.7
Q ss_pred EEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 19 FHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 19 ~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
..+.+|||+|+++|......+++.+|++|+|+|.++..++.....|+..+.... ..|+++|+|
T Consensus 75 ~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviN 137 (403)
T 3sjy_A 75 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQN 137 (403)
T ss_dssp EEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEE
T ss_pred ceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEE
Confidence 789999999999999999999999999999999999888888888887776543 247888876
No 136
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.44 E-value=8.9e-14 Score=88.73 Aligned_cols=77 Identities=17% Similarity=0.246 Sum_probs=55.2
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchh---------hhcchhhhccCCcEEEEEEEC
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQER---------FRTITTAYYRGAMGIMLVYDI 52 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~---------~~~~~~~~~~~~~~~ilv~d~ 52 (83)
+|||||+.++..+... ....+++|||+|++. ++..+..++++||++++|+|.
T Consensus 12 vGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~ 91 (439)
T 1mky_A 12 VGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDG 91 (439)
T ss_dssp SSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEET
T ss_pred CCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEEC
Confidence 6999999999866532 124788999999764 455678899999999999999
Q ss_pred CChhHHHH--HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 53 TNEKSFDN--IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 53 ~~~~s~~~--~~~w~~~~~~~~~~~~piilvgN 83 (83)
++..+... +..|+. . .+.|++||+|
T Consensus 92 ~~~~~~~d~~i~~~l~----~--~~~p~ilv~N 118 (439)
T 1mky_A 92 KRGITKEDESLADFLR----K--STVDTILVAN 118 (439)
T ss_dssp TTCCCHHHHHHHHHHH----H--HTCCEEEEEE
T ss_pred CCCCCHHHHHHHHHHH----H--cCCCEEEEEe
Confidence 88655443 333332 2 2688999987
No 137
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.44 E-value=1.1e-14 Score=92.82 Aligned_cols=65 Identities=12% Similarity=0.097 Sum_probs=52.2
Q ss_pred EEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcC----CC-ceEEEEeC
Q psy16649 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENAS----AN-VEKMLLGN 83 (83)
Q Consensus 18 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~----~~-~piilvgN 83 (83)
..++.+|||+|+++|...+..+++.+|++|+|+|.++ .+|+++..|..+.+++.. .. .|+++++|
T Consensus 83 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviN 152 (435)
T 1jny_A 83 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVN 152 (435)
T ss_dssp SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEE
T ss_pred CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEE
Confidence 4679999999999999999999999999999999999 899987766555544321 23 35778776
No 138
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.43 E-value=1e-13 Score=88.46 Aligned_cols=77 Identities=13% Similarity=0.079 Sum_probs=57.1
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCchhhhcc-------hhhhccCCcEEEEEEECC
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQERFRTI-------TTAYYRGAMGIMLVYDIT 53 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~~~~~~~-------~~~~~~~~~~~ilv~d~~ 53 (83)
+|||||+.++....+. ....+.+|||+|++++..+ ...+++++|++++|+|.+
T Consensus 45 vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~ 124 (423)
T 3qq5_A 45 VGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSA 124 (423)
T ss_dssp TTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSS
T ss_pred CCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCC
Confidence 6999999999887652 1127899999999987655 355889999999999994
Q ss_pred ChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 54 NEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 54 ~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
..+. ...|++++.+. ++|+++|+|
T Consensus 125 ~~~~---~~~~l~~l~~~---~~piIvV~N 148 (423)
T 3qq5_A 125 PTPY---EDDVVNLFKEM---EIPFVVVVN 148 (423)
T ss_dssp CCHH---HHHHHHHHHHT---TCCEEEECC
T ss_pred ChHH---HHHHHHHHHhc---CCCEEEEEe
Confidence 4333 35677776654 689999998
No 139
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.43 E-value=2.3e-14 Score=89.30 Aligned_cols=83 Identities=12% Similarity=0.135 Sum_probs=66.2
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchh----hhcchhhhccC---CcEEEEEEECCC
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQER----FRTITTAYYRG---AMGIMLVYDITN 54 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~----~~~~~~~~~~~---~~~~ilv~d~~~ 54 (83)
+|||||+.++....+. ....+.+|||+|+.. +..+...|++. ++++|+|+|+++
T Consensus 169 vGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~ 248 (342)
T 1lnz_A 169 VGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSG 248 (342)
T ss_dssp SSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSC
T ss_pred CCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCc
Confidence 6999999998765421 125789999999644 44566667665 999999999999
Q ss_pred ---hhHHHHHHHHHHHHHHhcC--CCceEEEEeC
Q psy16649 55 ---EKSFDNIKNWIRNIEENAS--ANVEKMLLGN 83 (83)
Q Consensus 55 ---~~s~~~~~~w~~~~~~~~~--~~~piilvgN 83 (83)
++++++++.|.+++....+ .+.|+++|+|
T Consensus 249 ~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~N 282 (342)
T 1lnz_A 249 LEGRDPYDDYLTINQELSEYNLRLTERPQIIVAN 282 (342)
T ss_dssp SSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEE
T ss_pred ccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEE
Confidence 8999999999999988653 4789999987
No 140
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.41 E-value=9e-14 Score=91.68 Aligned_cols=57 Identities=19% Similarity=0.190 Sum_probs=49.0
Q ss_pred EEEEEeCCCchhhhcchhhhccCCcEEEEEEECCC---hhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 20 HINYRDTAGQERFRTITTAYYRGAMGIMLVYDITN---EKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 20 ~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~---~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
.+++|||+|+++|..++..+++.+|++|+|+|.++ +++++.+..+ +. .++|+++++|
T Consensus 71 ~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l----~~---~~vPiIVViN 130 (594)
T 1g7s_A 71 GLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNIL----RM---YRTPFVVAAN 130 (594)
T ss_dssp EEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHH----HH---TTCCEEEEEE
T ss_pred CEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHH----HH---cCCeEEEEec
Confidence 48999999999999999999999999999999999 8888766532 21 4689999987
No 141
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.41 E-value=7.8e-14 Score=84.04 Aligned_cols=82 Identities=16% Similarity=0.147 Sum_probs=60.0
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcchh-------hh--ccCCcEEEEEEEC
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTITT-------AY--YRGAMGIMLVYDI 52 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~-------~~--~~~~~~~ilv~d~ 52 (83)
+||||++.++..+.+. ....+.+|||+|++++..+.. .| .+.+|++++|+|+
T Consensus 50 ~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~ 129 (270)
T 1h65_A 50 VGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRL 129 (270)
T ss_dssp SSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEES
T ss_pred CCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeC
Confidence 6999999998876642 234799999999977654332 12 3479999999999
Q ss_pred CChhHHHHH-HHHHHHHHHhcCCC--ceEEEEeC
Q psy16649 53 TNEKSFDNI-KNWIRNIEENASAN--VEKMLLGN 83 (83)
Q Consensus 53 ~~~~s~~~~-~~w~~~~~~~~~~~--~piilvgN 83 (83)
+.. ++... ..|++.+.+..+.+ .|+++|+|
T Consensus 130 d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~n 162 (270)
T 1h65_A 130 DAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALT 162 (270)
T ss_dssp SCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEE
T ss_pred CCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEE
Confidence 764 45544 47888887765444 79999987
No 142
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.41 E-value=3.7e-14 Score=82.62 Aligned_cols=79 Identities=11% Similarity=0.098 Sum_probs=58.6
Q ss_pred CCcceeeeeeccCccc---------------------eEEEEEEEeCCC----------chhhhcchhhhccC---CcEE
Q psy16649 1 SGENLCTLQIFRGCFQ---------------------HNFHINYRDTAG----------QERFRTITTAYYRG---AMGI 46 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~---------------------~~~~l~i~Dt~g----------~~~~~~~~~~~~~~---~~~~ 46 (83)
+|||||+.++..+.+. ....+.+|||+| ++++..+...|++. +|++
T Consensus 40 ~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 119 (223)
T 4dhe_A 40 AGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGM 119 (223)
T ss_dssp HHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEE
T ss_pred CCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEE
Confidence 5999999999877621 125688999999 67778888888887 7789
Q ss_pred EEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 47 MLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 47 ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
++|+|.++..+. .-..|++.+.+ .+.|+++|+|
T Consensus 120 i~v~d~~~~~~~-~~~~~~~~l~~---~~~p~i~v~n 152 (223)
T 4dhe_A 120 ILMMDARRPLTE-LDRRMIEWFAP---TGKPIHSLLT 152 (223)
T ss_dssp EEEEETTSCCCH-HHHHHHHHHGG---GCCCEEEEEE
T ss_pred EEEEeCCCCCCH-HHHHHHHHHHh---cCCCEEEEEe
Confidence 999999875442 22345555543 4688999987
No 143
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.40 E-value=2.5e-13 Score=89.63 Aligned_cols=62 Identities=21% Similarity=0.323 Sum_probs=54.4
Q ss_pred EEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 18 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
.+.+++|||+|+++|...+..+++.+|++|+|+|.++..+++....|..... .++|+++|+|
T Consensus 70 ~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViN 131 (599)
T 3cb4_D 70 TYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLN 131 (599)
T ss_dssp EEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEE
T ss_pred eEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeee
Confidence 4789999999999999999999999999999999999888888888876543 4689999987
No 144
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.40 E-value=1.4e-13 Score=81.48 Aligned_cols=81 Identities=14% Similarity=0.078 Sum_probs=56.1
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCC-----------chhhhcchhhhccCCcEEEEE
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAG-----------QERFRTITTAYYRGAMGIMLV 49 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g-----------~~~~~~~~~~~~~~~~~~ilv 49 (83)
+||||++.++....+. ....+.+|||+| ++.+......++++++++|+|
T Consensus 40 ~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v 119 (239)
T 3lxx_A 40 AGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLV 119 (239)
T ss_dssp SSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEE
T ss_pred CCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 6999999998775553 235789999999 456666777788899999999
Q ss_pred EECCChhHHHHHHHHHHHHHHhcC--CCceEEEEeC
Q psy16649 50 YDITNEKSFDNIKNWIRNIEENAS--ANVEKMLLGN 83 (83)
Q Consensus 50 ~d~~~~~s~~~~~~w~~~~~~~~~--~~~piilvgN 83 (83)
+|+++... ....|++.+.+..+ ...|+++|+|
T Consensus 120 ~d~~~~~~--~~~~~l~~~~~~~~~~~~~~~iiv~n 153 (239)
T 3lxx_A 120 VPLGRYTE--EEHKATEKILKMFGERARSFMILIFT 153 (239)
T ss_dssp EETTCCSS--HHHHHHHHHHHHHHHHHGGGEEEEEE
T ss_pred eeCCCCCH--HHHHHHHHHHHHhhhhccceEEEEEe
Confidence 99976443 12234444433211 2458888876
No 145
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.39 E-value=5.6e-14 Score=89.61 Aligned_cols=79 Identities=16% Similarity=0.127 Sum_probs=56.3
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCch--------hhhcchhhhccCCcEEEEEEECC
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQE--------RFRTITTAYYRGAMGIMLVYDIT 53 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~--------~~~~~~~~~~~~~~~~ilv~d~~ 53 (83)
+|||||+.++....+. ....+++|||+|++ ++...+..+++.||++++|+|.+
T Consensus 14 vGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~ 93 (436)
T 2hjg_A 14 VGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGR 93 (436)
T ss_dssp SSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETT
T ss_pred CCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 6999999998876542 23468999999986 67788889999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 54 NEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 54 ~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
+..++.. .|+.++.+ ..+.|++||+|
T Consensus 94 ~~~~~~d--~~~~~~l~--~~~~pvilv~N 119 (436)
T 2hjg_A 94 EGVTAAD--EEVAKILY--RTKKPVVLAVN 119 (436)
T ss_dssp TCSCHHH--HHHHHHHT--TCCSCEEEEEE
T ss_pred CCCCHHH--HHHHHHHH--HcCCCEEEEEE
Confidence 8777654 33333222 25789999987
No 146
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.39 E-value=3e-13 Score=81.52 Aligned_cols=78 Identities=14% Similarity=-0.031 Sum_probs=58.4
Q ss_pred CCcceeeeeeccCccc------------------eEEEEEEEeCCCchhhhc------chhhhc--cCCcEEEEEEECCC
Q psy16649 1 SGENLCTLQIFRGCFQ------------------HNFHINYRDTAGQERFRT------ITTAYY--RGAMGIMLVYDITN 54 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~------------------~~~~l~i~Dt~g~~~~~~------~~~~~~--~~~~~~ilv~d~~~ 54 (83)
|||||++.++....+. ....+.+|||+|++.+.. +...|+ .++|++++|+|.++
T Consensus 14 ~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~ 93 (271)
T 3k53_A 14 VGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTC 93 (271)
T ss_dssp SSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGG
T ss_pred CCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCc
Confidence 7999999998776543 234689999999988766 667777 68999999999988
Q ss_pred hhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 55 EKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 55 ~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
.+ ....|..++.+. ...|+++|+|
T Consensus 94 ~~---~~~~~~~~~~~~--~~~p~ilv~N 117 (271)
T 3k53_A 94 LM---RNLFLTLELFEM--EVKNIILVLN 117 (271)
T ss_dssp HH---HHHHHHHHHHHT--TCCSEEEEEE
T ss_pred ch---hhHHHHHHHHhc--CCCCEEEEEE
Confidence 64 333455455443 2389999987
No 147
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.38 E-value=6.9e-13 Score=82.72 Aligned_cols=82 Identities=11% Similarity=0.079 Sum_probs=63.0
Q ss_pred CCcceeeeeeccCccc------------------eEEEEEEEeCCCchhhh---------cchhhhccCCcEEEEEEECC
Q psy16649 1 SGENLCTLQIFRGCFQ------------------HNFHINYRDTAGQERFR---------TITTAYYRGAMGIMLVYDIT 53 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~------------------~~~~l~i~Dt~g~~~~~---------~~~~~~~~~~~~~ilv~d~~ 53 (83)
+||||++.++....+. ....+.+|||+|..... .....+...+|++++|+|++
T Consensus 178 vGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s 257 (357)
T 2e87_A 178 VGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPS 257 (357)
T ss_dssp SSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTT
T ss_pred CCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCC
Confidence 6999999998765532 12458999999985432 11224556799999999999
Q ss_pred Chh--HHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 54 NEK--SFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 54 ~~~--s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
+.. ++++...|++++....+ +.|+++|+|
T Consensus 258 ~~~~~~~~~~~~~~~~i~~~~~-~~piilV~N 288 (357)
T 2e87_A 258 EHCGFPLEEQIHLFEEVHGEFK-DLPFLVVIN 288 (357)
T ss_dssp CTTSSCHHHHHHHHHHHHHHTT-TSCEEEEEC
T ss_pred ccccCCHHHHHHHHHHHHHhcC-CCCEEEEEE
Confidence 988 78888899999987653 799999987
No 148
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.38 E-value=5.9e-13 Score=87.93 Aligned_cols=62 Identities=16% Similarity=0.297 Sum_probs=54.4
Q ss_pred EEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 18 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
.+.+++|||+|+++|......+++.+|++|+|+|.++..+++....|..... .++|+++|+|
T Consensus 72 ~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviN 133 (600)
T 2ywe_A 72 TYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVIN 133 (600)
T ss_dssp EEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEE
T ss_pred eEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEe
Confidence 4789999999999999999999999999999999999988888888865543 4788999987
No 149
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.37 E-value=2.1e-13 Score=87.39 Aligned_cols=79 Identities=15% Similarity=0.104 Sum_probs=60.0
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCC----------chhhhcchhh-hccCCcEEEEEE
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAG----------QERFRTITTA-YYRGAMGIMLVY 50 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g----------~~~~~~~~~~-~~~~~~~~ilv~ 50 (83)
+||||++.++...... ....+++|||+| +|+|..++.. +++.+|++++|+
T Consensus 206 vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llvi 285 (456)
T 4dcu_A 206 VGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVL 285 (456)
T ss_dssp SSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEE
T ss_pred CCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEE
Confidence 6999999998854311 234789999999 8999888775 889999999999
Q ss_pred ECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 51 DITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 51 d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
|.++..+ +....|...+.+ .+.|+++|+|
T Consensus 286 D~~~~~~-~~~~~~~~~~~~---~~~~~ilv~N 314 (456)
T 4dcu_A 286 DGEEGII-EQDKRIAGYAHE---AGKAVVIVVN 314 (456)
T ss_dssp ETTTCCC-HHHHHHHHHHHH---TTCEEEEEEE
T ss_pred eCCCCcC-HHHHHHHHHHHH---cCCCEEEEEE
Confidence 9987544 223455555544 4689999997
No 150
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.36 E-value=4.6e-13 Score=87.35 Aligned_cols=62 Identities=21% Similarity=0.161 Sum_probs=52.3
Q ss_pred EEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 18 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
.+.+++|||+|+++|...+..+++.+|++|+|+|.++..+.+....|. .+. ..++|+++|+|
T Consensus 81 ~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~---~~~iPiivviN 142 (528)
T 3tr5_A 81 DYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCR---LRHTPIMTFIN 142 (528)
T ss_dssp TEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHH---TTTCCEEEEEE
T ss_pred CEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHH---HcCCCEEEEEe
Confidence 478999999999999999999999999999999999987777776663 222 24689999987
No 151
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.36 E-value=5.8e-13 Score=90.62 Aligned_cols=62 Identities=21% Similarity=0.275 Sum_probs=54.0
Q ss_pred EEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 18 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
.+.+++|||+|+++|...+..+++.+|++|+|+|.++..+++....|..... .++|+++++|
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~~p~ilviN 158 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG----ERIKPVVVIN 158 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCEEEEEEE
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH----cCCCeEEEEE
Confidence 6789999999999999999999999999999999999988888777754332 4688999987
No 152
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.35 E-value=1.6e-12 Score=77.62 Aligned_cols=83 Identities=17% Similarity=0.170 Sum_probs=51.6
Q ss_pred CCcceeeeeeccCc-cc-------------------eEEEEEEEeCCCchhhhc-----------chhhhccCCcEEEEE
Q psy16649 1 SGENLCTLQIFRGC-FQ-------------------HNFHINYRDTAGQERFRT-----------ITTAYYRGAMGIMLV 49 (83)
Q Consensus 1 ~GKss~~~~~~~~~-~~-------------------~~~~l~i~Dt~g~~~~~~-----------~~~~~~~~~~~~ilv 49 (83)
+||||++.++.... +. ....+.||||+|+..+.. ....+++.+|++++|
T Consensus 33 ~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V 112 (260)
T 2xtp_A 33 TGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLV 112 (260)
T ss_dssp SCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 69999999987554 22 125799999999876532 223478899999999
Q ss_pred EECCChhHH-HHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 50 YDITNEKSF-DNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 50 ~d~~~~~s~-~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
+|+++.... ..+..|+.++.......+++++++|
T Consensus 113 ~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~n 147 (260)
T 2xtp_A 113 TQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTH 147 (260)
T ss_dssp EETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEEC
T ss_pred EeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEc
Confidence 999863222 2223343333221112455666654
No 153
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.35 E-value=9.6e-14 Score=89.32 Aligned_cols=66 Identities=12% Similarity=0.033 Sum_probs=40.6
Q ss_pred EEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCCh---hHHHHHHHHHHHHHHhcCCCce-EEEEeC
Q psy16649 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNE---KSFDNIKNWIRNIEENASANVE-KMLLGN 83 (83)
Q Consensus 18 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~---~s~~~~~~w~~~~~~~~~~~~p-iilvgN 83 (83)
..++.||||+|+++|......+++.+|++|+|+|.++. +||+...+|.+.+......++| +++++|
T Consensus 120 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviN 189 (467)
T 1r5b_A 120 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVIN 189 (467)
T ss_dssp SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEE
T ss_pred CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEE
Confidence 46789999999999999999999999999999999986 4565544555544433224576 888876
No 154
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.35 E-value=2.3e-12 Score=80.83 Aligned_cols=82 Identities=17% Similarity=0.118 Sum_probs=61.5
Q ss_pred CCcceeeeeeccCccc------------------eEEEEEEEeCCCc---------hhhhcchhhhccCCcEEEEEEECC
Q psy16649 1 SGENLCTLQIFRGCFQ------------------HNFHINYRDTAGQ---------ERFRTITTAYYRGAMGIMLVYDIT 53 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~------------------~~~~l~i~Dt~g~---------~~~~~~~~~~~~~~~~~ilv~d~~ 53 (83)
+||||++.++....+. ....+.+|||+|. +.|+...+ .++.+|.+++|+|++
T Consensus 190 aGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~~~aD~il~VvD~s 268 (364)
T 2qtf_A 190 SGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLS-EAKYSDALILVIDST 268 (364)
T ss_dssp SSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHH-GGGGSSEEEEEEETT
T ss_pred CCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHH-HHHhCCEEEEEEECC
Confidence 6999999998876551 1256789999997 34444443 578999999999999
Q ss_pred Chh--HHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 54 NEK--SFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 54 ~~~--s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
++. +++.+..|.+.+......+.|+++|+|
T Consensus 269 ~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~N 300 (364)
T 2qtf_A 269 FSENLLIETLQSSFEILREIGVSGKPILVTLN 300 (364)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEE
T ss_pred CCcchHHHHHHHHHHHHHHhCcCCCCEEEEEE
Confidence 987 677777787777665446789999987
No 155
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.34 E-value=2.6e-14 Score=93.30 Aligned_cols=79 Identities=15% Similarity=0.149 Sum_probs=61.2
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHH
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 61 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~ 61 (83)
+|||||+.++....+. ....+.+|||+|++.|..++..+++.+|++|+|+|.++....+..
T Consensus 15 vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~ 94 (537)
T 3izy_P 15 HGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTV 94 (537)
T ss_dssp TTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHH
T ss_pred CCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCccHHHH
Confidence 6999999988654332 234789999999999999999999999999999999986655444
Q ss_pred HHHHHHHHHhcCCCceEEEEeC
Q psy16649 62 KNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 62 ~~w~~~~~~~~~~~~piilvgN 83 (83)
+.| ......++|+++++|
T Consensus 95 e~l----~~~~~~~vPiIVViN 112 (537)
T 3izy_P 95 ESI----QHAKDAHVPIVLAIN 112 (537)
T ss_dssp HHH----HHHHTTTCCEEECCB
T ss_pred HHH----HHHHHcCCcEEEEEe
Confidence 433 222235689999987
No 156
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.33 E-value=6.4e-13 Score=84.97 Aligned_cols=66 Identities=18% Similarity=0.106 Sum_probs=46.9
Q ss_pred EEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhH---HHHHHHHHHHHHHhcCCCce-EEEEeC
Q psy16649 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKS---FDNIKNWIRNIEENASANVE-KMLLGN 83 (83)
Q Consensus 18 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s---~~~~~~w~~~~~~~~~~~~p-iilvgN 83 (83)
...+.||||+|+++|......+++.+|++|+|+|.++... |+...++.+.+.......+| +++++|
T Consensus 94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviN 163 (439)
T 3j2k_7 94 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLIN 163 (439)
T ss_pred CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEee
Confidence 4589999999999999999999999999999999998532 33222222222222223455 888877
No 157
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.32 E-value=1.5e-12 Score=82.98 Aligned_cols=63 Identities=10% Similarity=-0.029 Sum_probs=47.3
Q ss_pred EEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 18 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
..++.+|||+|+++|...+..+++.+|++|+|+|.++... .....|+..+... ...|+++|+|
T Consensus 103 ~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~--~~~~iIvviN 165 (434)
T 1zun_B 103 KRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLL--GIKHIVVAIN 165 (434)
T ss_dssp SEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHT--TCCEEEEEEE
T ss_pred CceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc--CCCeEEEEEE
Confidence 3579999999999999888899999999999999998643 2334444444332 2236888876
No 158
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.32 E-value=1.2e-12 Score=84.51 Aligned_cols=66 Identities=12% Similarity=0.072 Sum_probs=44.8
Q ss_pred eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHH--HHHHH---HHHHhcCCCceEEEEeC
Q psy16649 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI--KNWIR---NIEENASANVEKMLLGN 83 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~--~~w~~---~~~~~~~~~~piilvgN 83 (83)
....+.||||+|+++|......+++.+|++|+|+|.++.+++..+ ..+.. .+.... ...|+++|+|
T Consensus 109 ~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-~~~~iIvviN 179 (483)
T 3p26_A 109 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-GIHNLIIAMN 179 (483)
T ss_dssp SSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT-TCCCEEEEEE
T ss_pred CCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc-CCCcEEEEEE
Confidence 346899999999999999999999999999999999998765442 11211 122222 2356888887
No 159
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.32 E-value=2.2e-13 Score=87.29 Aligned_cols=79 Identities=16% Similarity=0.119 Sum_probs=60.4
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCC--------chhhhcchhhhccCCcEEEEEEECC
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAG--------QERFRTITTAYYRGAMGIMLVYDIT 53 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g--------~~~~~~~~~~~~~~~~~~ilv~d~~ 53 (83)
+|||||+.++....+. ....+++|||+| +++++.....+++.+|++|+|+|..
T Consensus 34 vGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~ 113 (456)
T 4dcu_A 34 VGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGR 113 (456)
T ss_dssp SSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESS
T ss_pred CcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCC
Confidence 7999999998876553 234689999999 8899999999999999999999977
Q ss_pred ChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 54 NEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 54 ~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
+. +.....|+.+..+. .+.|++||+|
T Consensus 114 ~~--~~~~d~~l~~~l~~--~~~pvilV~N 139 (456)
T 4dcu_A 114 EG--VTAADEEVAKILYR--TKKPVVLAVN 139 (456)
T ss_dssp SC--SCHHHHHHHHHHTT--CCSCEEEEEE
T ss_pred CC--CChHHHHHHHHHHH--cCCCEEEEEE
Confidence 63 33333444333322 5789999987
No 160
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.32 E-value=2.9e-12 Score=76.47 Aligned_cols=81 Identities=11% Similarity=0.090 Sum_probs=52.9
Q ss_pred CCcceeeeeeccCccc--------------------eEEEEEEEeCCCc--------hhhhcchhhh----ccCCcEEEE
Q psy16649 1 SGENLCTLQIFRGCFQ--------------------HNFHINYRDTAGQ--------ERFRTITTAY----YRGAMGIML 48 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~--------------------~~~~l~i~Dt~g~--------~~~~~~~~~~----~~~~~~~il 48 (83)
+||||++.++....+. ....+.+|||+|. +++......+ .+++|++|+
T Consensus 32 ~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~ 111 (247)
T 3lxw_A 32 AGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLL 111 (247)
T ss_dssp SSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEE
T ss_pred CcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 6999999988765432 2357899999996 3333333333 389999999
Q ss_pred EEECCChhHHHHHHHHHHHHHHhcC---CCceEEEEeC
Q psy16649 49 VYDITNEKSFDNIKNWIRNIEENAS---ANVEKMLLGN 83 (83)
Q Consensus 49 v~d~~~~~s~~~~~~w~~~~~~~~~---~~~piilvgN 83 (83)
|+|+++... .-..+++.+.+..+ .+.|++|++|
T Consensus 112 V~d~~~~~~--~~~~~~~~l~~~~~~~~~~~~iilv~n 147 (247)
T 3lxw_A 112 VTQLGRFTA--QDQQAVRQVRDMFGEDVLKWMVIVFTR 147 (247)
T ss_dssp EEETTBCCH--HHHHHHHHHHHHHCGGGGGGEEEEEEC
T ss_pred EEeCCCCCH--HHHHHHHHHHHHhChhhhccEEEEEEc
Confidence 999985322 11233444444322 3789999987
No 161
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.31 E-value=3.5e-13 Score=86.53 Aligned_cols=64 Identities=11% Similarity=0.047 Sum_probs=46.8
Q ss_pred eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCCh---hHHH---HHHHHHHHHHHhcCCCce-EEEEeC
Q psy16649 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNE---KSFD---NIKNWIRNIEENASANVE-KMLLGN 83 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~---~s~~---~~~~w~~~~~~~~~~~~p-iilvgN 83 (83)
....+.+|||+|+++|......+++.+|++|+|+|.++. .+|+ ....++..+.. ..+| +++++|
T Consensus 83 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~---~~v~~iivviN 153 (458)
T 1f60_A 83 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVN 153 (458)
T ss_dssp SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEE
T ss_pred CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH---cCCCeEEEEEE
Confidence 347899999999999999999999999999999999875 3442 22222222222 2454 888876
No 162
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.29 E-value=1.9e-12 Score=81.84 Aligned_cols=62 Identities=15% Similarity=0.110 Sum_probs=49.0
Q ss_pred EEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCce-EEEEeC
Q psy16649 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVE-KMLLGN 83 (83)
Q Consensus 18 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~p-iilvgN 83 (83)
...+.+|||+|+++|......+++.+|++|+|+|.++.... ....|+..+.. .++| +++++|
T Consensus 74 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~---~~ip~iivviN 136 (405)
T 2c78_A 74 KRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ---VGVPYIVVFMN 136 (405)
T ss_dssp SCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHH---TTCCCEEEEEE
T ss_pred CeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHH---cCCCEEEEEEE
Confidence 36789999999999999999999999999999999886543 34555555544 2567 778776
No 163
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.29 E-value=6.6e-13 Score=85.83 Aligned_cols=77 Identities=17% Similarity=0.113 Sum_probs=58.0
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCch-hhhc--------chhhhccCCcEEEEEEEC
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQE-RFRT--------ITTAYYRGAMGIMLVYDI 52 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~-~~~~--------~~~~~~~~~~~~ilv~d~ 52 (83)
+|||||+.++....+. ....+.+|||+|++ ++.. ....+++.+|++|+|+|.
T Consensus 254 vGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~ 333 (482)
T 1xzp_A 254 VGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDA 333 (482)
T ss_dssp HHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEET
T ss_pred CcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecC
Confidence 5999999988766432 23578999999987 5532 245688999999999999
Q ss_pred CChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 53 TNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 53 ~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
+++.+++..+-| +.+ .+.|+++|+|
T Consensus 334 s~~~s~~~~~il-~~l-----~~~piivV~N 358 (482)
T 1xzp_A 334 SSPLDEEDRKIL-ERI-----KNKRYLVVIN 358 (482)
T ss_dssp TSCCCHHHHHHH-HHH-----TTSSEEEEEE
T ss_pred CCCCCHHHHHHH-HHh-----cCCCEEEEEE
Confidence 999888765432 322 3678999987
No 164
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.27 E-value=3.3e-12 Score=80.68 Aligned_cols=61 Identities=15% Similarity=0.078 Sum_probs=46.7
Q ss_pred EEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCce-EEEEeC
Q psy16649 19 FHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVE-KMLLGN 83 (83)
Q Consensus 19 ~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~p-iilvgN 83 (83)
..+.+|||+|+++|......+++.+|++|+|+|.++....+..+.| ..++. .++| +++++|
T Consensus 66 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~---~~vp~iivviN 127 (397)
T 1d2e_A 66 RHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQ---IGVEHVVVYVN 127 (397)
T ss_dssp CEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHH---TTCCCEEEEEE
T ss_pred eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHH---cCCCeEEEEEE
Confidence 6789999999999998889999999999999999986544433334 33332 3567 677776
No 165
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.27 E-value=4.2e-13 Score=87.07 Aligned_cols=76 Identities=18% Similarity=0.211 Sum_probs=57.6
Q ss_pred CCcceeeeeeccCccc------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCC---hhHHH
Q psy16649 1 SGENLCTLQIFRGCFQ------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITN---EKSFD 59 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~---~~s~~ 59 (83)
+|||||+.++....+. ....+.+|||+|++.|..++..+++.+|++++|+|.++ +++++
T Consensus 15 ~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e 94 (501)
T 1zo1_I 15 HGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIE 94 (501)
T ss_dssp SSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHH
T ss_pred CCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHH
Confidence 6999999887643221 23478999999999999999999999999999999988 45444
Q ss_pred HHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 60 NIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 60 ~~~~w~~~~~~~~~~~~piilvgN 83 (83)
.+. .+. ..++|+++++|
T Consensus 95 ~l~----~~~---~~~vPiIVviN 111 (501)
T 1zo1_I 95 AIQ----HAK---AAQVPVVVAVN 111 (501)
T ss_dssp HHH----HHH---HTTCCEEEEEE
T ss_pred HHH----HHH---hcCceEEEEEE
Confidence 332 222 24688999887
No 166
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.26 E-value=1.3e-12 Score=84.12 Aligned_cols=77 Identities=13% Similarity=0.054 Sum_probs=49.5
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcch--------hhhccCCcEEEEEEECC
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTIT--------TAYYRGAMGIMLVYDIT 53 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~~--------~~~~~~~~~~ilv~d~~ 53 (83)
+||||++.++....+. ....+.+|||+|..++.... ..+++.+|++++|+|.+
T Consensus 235 vGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s 314 (462)
T 3geh_A 235 VGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAA 314 (462)
T ss_dssp SSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCCCSCSEEEEEEETT
T ss_pred CCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccC
Confidence 6999999998765331 34678999999987654332 34688999999999999
Q ss_pred ChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 54 NEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 54 ~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
++.+... ..|++.+. ..|+++|+|
T Consensus 315 ~~~~~~~-~~i~~~l~-----~~piivV~N 338 (462)
T 3geh_A 315 TGWTTGD-QEIYEQVK-----HRPLILVMN 338 (462)
T ss_dssp TCSCHHH-HHHHHHHT-----TSCEEEEEE
T ss_pred CCCCHHH-HHHHHhcc-----CCcEEEEEE
Confidence 9877655 44555442 368999987
No 167
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.26 E-value=2.4e-12 Score=80.88 Aligned_cols=78 Identities=6% Similarity=-0.046 Sum_probs=57.8
Q ss_pred CCcceeeeeeccCcc---------c-eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHH
Q psy16649 1 SGENLCTLQIFRGCF---------Q-HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE 70 (83)
Q Consensus 1 ~GKss~~~~~~~~~~---------~-~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~ 70 (83)
+|||||+.++..... . ...++.+|||+|+++|.......++.+|++|+|+| +...+...++|+..+..
T Consensus 32 ~GKSTL~~~L~~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd--~~g~~~qt~e~~~~~~~ 109 (370)
T 2elf_A 32 SGRTSLAANLGKKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP--PQGLDAHTGECIIALDL 109 (370)
T ss_dssp SSHHHHHHTTSEEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC--TTCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc--CCCCcHHHHHHHHHHHH
Confidence 699999988862211 0 34579999999999998888888899999999999 45566667777766654
Q ss_pred hcCCCceE-EEEeC
Q psy16649 71 NASANVEK-MLLGN 83 (83)
Q Consensus 71 ~~~~~~pi-ilvgN 83 (83)
. .+|. +++.|
T Consensus 110 ~---~i~~~ivvvN 120 (370)
T 2elf_A 110 L---GFKHGIIALT 120 (370)
T ss_dssp T---TCCEEEEEEC
T ss_pred c---CCCeEEEEEE
Confidence 3 3454 55555
No 168
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.25 E-value=1.1e-12 Score=86.74 Aligned_cols=66 Identities=15% Similarity=0.070 Sum_probs=45.8
Q ss_pred EEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChh---HHHHHHHHHHHHHHhcC-CCceEEEEeC
Q psy16649 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEK---SFDNIKNWIRNIEENAS-ANVEKMLLGN 83 (83)
Q Consensus 18 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~---s~~~~~~w~~~~~~~~~-~~~piilvgN 83 (83)
...+.||||+|+++|......+++.+|++|+|+|.++.. +|....++.+.+..... ...|+++|+|
T Consensus 244 ~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvN 313 (611)
T 3izq_1 244 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMN 313 (611)
T ss_dssp SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEE
T ss_pred CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEe
Confidence 358999999999999999999999999999999998742 12111222222222222 2345888887
No 169
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.23 E-value=4.3e-12 Score=84.89 Aligned_cols=62 Identities=23% Similarity=0.335 Sum_probs=53.0
Q ss_pred EEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 18 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
.+.+++|||+|+++|...+..+++.+|++|+|+|.++..+++....|.. +.+ .++|+++|+|
T Consensus 76 ~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~---~~~p~ivviN 137 (691)
T 1dar_A 76 DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK---YKVPRIAFAN 137 (691)
T ss_dssp TEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEE
T ss_pred CeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH---cCCCEEEEEE
Confidence 4689999999999999999999999999999999999888888777754 322 3688899887
No 170
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.21 E-value=3.1e-11 Score=76.44 Aligned_cols=59 Identities=14% Similarity=0.158 Sum_probs=45.6
Q ss_pred EEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCC----hhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 19 FHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITN----EKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 19 ~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~----~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
..+.+|||+|+++|..........+|++|+|+|.++ +++++.+..| ... ...|+++++|
T Consensus 81 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~l--~~~~iivv~N 143 (408)
T 1s0u_A 81 RRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL----EIL--GIDKIIIVQN 143 (408)
T ss_dssp EEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH----HHT--TCCCEEEEEE
T ss_pred cEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH----HHc--CCCeEEEEEE
Confidence 689999999999998888888889999999999994 5666665543 221 2347888876
No 171
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.20 E-value=1.1e-11 Score=80.02 Aligned_cols=76 Identities=11% Similarity=0.138 Sum_probs=57.7
Q ss_pred CCcceeeeeeccCc-------cc------------------eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCC-
Q psy16649 1 SGENLCTLQIFRGC-------FQ------------------HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITN- 54 (83)
Q Consensus 1 ~GKss~~~~~~~~~-------~~------------------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~- 54 (83)
+|||||+.++.... +. ....+.+|||+|+++|......+++.+|++|+|+|.++
T Consensus 30 ~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g 109 (482)
T 1wb1_A 30 HGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEG 109 (482)
T ss_dssp SSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTC
T ss_pred ChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCC
Confidence 69999998887654 11 23689999999999999999999999999999999998
Q ss_pred --hhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 55 --EKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 55 --~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
+++++.+. .++. ..+|+++|+|
T Consensus 110 ~~~qt~e~l~----~~~~---~~ip~IvviN 133 (482)
T 1wb1_A 110 PKTQTGEHML----ILDH---FNIPIIVVIT 133 (482)
T ss_dssp SCHHHHHHHH----HHHH---TTCCBCEEEE
T ss_pred ccHHHHHHHH----HHHH---cCCCEEEEEE
Confidence 56655543 2222 2466677766
No 172
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.19 E-value=1e-11 Score=75.22 Aligned_cols=62 Identities=6% Similarity=0.146 Sum_probs=46.3
Q ss_pred EEEEEEeCCCch-------------hhhcchhhhccCCcEEE-EEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 19 FHINYRDTAGQE-------------RFRTITTAYYRGAMGIM-LVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 19 ~~l~i~Dt~g~~-------------~~~~~~~~~~~~~~~~i-lv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
..+.+|||+|.. .+..+...|++.+++++ +|+|.++..+......|.+.+. +.+.|+++|+|
T Consensus 125 ~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~---~~~~~~i~V~N 200 (299)
T 2aka_B 125 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD---PQGQRTIGVIT 200 (299)
T ss_dssp CSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHC---TTCSSEEEEEE
T ss_pred CCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhC---CCCCeEEEEEE
Confidence 589999999963 46678888999999887 6899988655554444555543 35689999987
No 173
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.19 E-value=2.6e-11 Score=81.33 Aligned_cols=61 Identities=21% Similarity=0.255 Sum_probs=50.4
Q ss_pred EEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 19 FHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 19 ~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
+.++||||+|+++|...+..+++.+|++|+|+|.++..+.+....|.. +. ..++|+++|+|
T Consensus 82 ~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~-~~---~~~ip~ilviN 142 (704)
T 2rdo_7 82 HRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQ-AN---KYKVPRIAFVN 142 (704)
T ss_pred eeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHH-HH---HcCCCEEEEEe
Confidence 789999999999999999999999999999999998876666555532 22 24688898887
No 174
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.19 E-value=2.5e-12 Score=80.51 Aligned_cols=62 Identities=19% Similarity=0.384 Sum_probs=40.4
Q ss_pred EEEEEEEeCCCc-------hhhhcchh-------hhccCCcEE-----------EEEEECCC-hhHHHHHH-HHHHHHHH
Q psy16649 18 NFHINYRDTAGQ-------ERFRTITT-------AYYRGAMGI-----------MLVYDITN-EKSFDNIK-NWIRNIEE 70 (83)
Q Consensus 18 ~~~l~i~Dt~g~-------~~~~~~~~-------~~~~~~~~~-----------ilv~d~~~-~~s~~~~~-~w~~~~~~ 70 (83)
.+.+.+|||+|+ +++..+.. .|++.++++ +++|++++ ..++..+. .|++.+
T Consensus 94 ~~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l-- 171 (361)
T 2qag_A 94 KLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI-- 171 (361)
T ss_dssp EEEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT--
T ss_pred ccceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh--
Confidence 457999999999 88888887 888877665 48888887 67777776 455544
Q ss_pred hcCCCceEEEEeC
Q psy16649 71 NASANVEKMLLGN 83 (83)
Q Consensus 71 ~~~~~~piilvgN 83 (83)
...+|+++|+|
T Consensus 172 --~~~~piIlV~N 182 (361)
T 2qag_A 172 --HNKVNIVPVIA 182 (361)
T ss_dssp --CS-SCEEEEEE
T ss_pred --ccCCCEEEEEE
Confidence 36799999987
No 175
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.19 E-value=4.1e-12 Score=79.25 Aligned_cols=62 Identities=13% Similarity=0.148 Sum_probs=46.8
Q ss_pred EEEEEeCCCchhh-------------hcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 20 HINYRDTAGQERF-------------RTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 20 ~l~i~Dt~g~~~~-------------~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
.+.+|||+|..++ ..+...|+++++++|+++|.++.+... ..|++.++...+...|+++|+|
T Consensus 137 ~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~~~~~~~~~i~V~n 211 (360)
T 3t34_A 137 NLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPSGDRTFGVLT 211 (360)
T ss_dssp SEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHHHSCTTCTTEEEEEE
T ss_pred CeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHHHhcccCCCEEEEEe
Confidence 4789999998876 667889999999999999876654332 4455555555555678888876
No 176
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.18 E-value=8.9e-12 Score=81.34 Aligned_cols=62 Identities=16% Similarity=0.153 Sum_probs=46.7
Q ss_pred EEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 18 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
.+.+++|||+|+++|......+++.+|++|+|+|.++...-+. ..++..+ ...++|+++++|
T Consensus 81 ~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~---~~~~ipiivviN 142 (529)
T 2h5e_A 81 DCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVT---RLRDTPILTFMN 142 (529)
T ss_dssp TEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHH---TTTTCCEEEEEE
T ss_pred CeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHH---HHcCCCEEEEEc
Confidence 4789999999999999888899999999999999988643221 2222222 224788999887
No 177
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.17 E-value=5e-11 Score=75.50 Aligned_cols=59 Identities=15% Similarity=0.166 Sum_probs=45.1
Q ss_pred EEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCC----hhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 19 FHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITN----EKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 19 ~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~----~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
..+.+|||+|+++|..........+|++|+|+|.++ +++++.+..| ... ...|+++++|
T Consensus 83 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~~--~~~~iivviN 145 (410)
T 1kk1_A 83 RRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL----QII--GQKNIIIAQN 145 (410)
T ss_dssp EEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHH----HHH--TCCCEEEEEE
T ss_pred cEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHH----HHc--CCCcEEEEEE
Confidence 789999999999998887788889999999999994 5566655543 222 2346777776
No 178
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.15 E-value=1.9e-11 Score=74.88 Aligned_cols=78 Identities=13% Similarity=0.135 Sum_probs=55.6
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCch---------hhhcchhhhccCCcEEEEEEEC
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQE---------RFRTITTAYYRGAMGIMLVYDI 52 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~---------~~~~~~~~~~~~~~~~ilv~d~ 52 (83)
+|||||+.++....+. ....+.+|||+|++ .+......+++.+|++++|+|.
T Consensus 19 vGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~ 98 (301)
T 1ega_A 19 VGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEG 98 (301)
T ss_dssp SSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEET
T ss_pred CCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeC
Confidence 6999999998765432 23578999999987 2344456788999999999999
Q ss_pred CChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 53 TNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 53 ~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
++ +.....|+-+... ..+.|+++++|
T Consensus 99 ~~---~~~~~~~i~~~l~--~~~~P~ilvlN 124 (301)
T 1ega_A 99 TR---WTPDDEMVLNKLR--EGKAPVILAVN 124 (301)
T ss_dssp TC---CCHHHHHHHHHHH--SSSSCEEEEEE
T ss_pred CC---CCHHHHHHHHHHH--hcCCCEEEEEE
Confidence 76 4444445433322 24788998886
No 179
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.13 E-value=3e-11 Score=80.89 Aligned_cols=62 Identities=19% Similarity=0.239 Sum_probs=52.0
Q ss_pred EEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 18 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
.+.+++|||+|+.+|......+++.+|++|+|+|.++..+++....|.. +.+ .++|+++|+|
T Consensus 74 ~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~---~~~p~ilviN 135 (693)
T 2xex_A 74 GHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT---YGVPRIVFVN 135 (693)
T ss_dssp TEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH---TTCCEEEEEE
T ss_pred CeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH---cCCCEEEEEE
Confidence 4679999999999999889999999999999999999888877766643 333 3688888887
No 180
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.07 E-value=5e-11 Score=83.44 Aligned_cols=61 Identities=16% Similarity=0.077 Sum_probs=47.3
Q ss_pred EEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCce-EEEEeC
Q psy16649 19 FHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVE-KMLLGN 83 (83)
Q Consensus 19 ~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~p-iilvgN 83 (83)
..+.||||+|+++|......+++.+|++|+|+|.++....+ ...|+..+... ++| +++++|
T Consensus 359 ~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~Q-TrEhL~ll~~l---gIP~IIVVIN 420 (1289)
T 3avx_A 359 RHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLGRQV---GVPYIIVFLN 420 (1289)
T ss_dssp CEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTT-HHHHHHHHHHH---TCSCEEEEEE
T ss_pred EEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcHH-HHHHHHHHHHc---CCCeEEEEEe
Confidence 67899999999999999999999999999999999864333 33444455432 466 677776
No 181
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.05 E-value=2.2e-11 Score=79.82 Aligned_cols=61 Identities=18% Similarity=0.181 Sum_probs=48.9
Q ss_pred EEEEEeCCCchh-----------hhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 20 HINYRDTAGQER-----------FRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 20 ~l~i~Dt~g~~~-----------~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
.+.+|||+|... +......+++.+|++++|+|.++....+....|++.+.+ ...|+++|+|
T Consensus 155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~pvilVlN 226 (550)
T 2qpt_A 155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG---HEDKIRVVLN 226 (550)
T ss_dssp HCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT---CGGGEEEEEE
T ss_pred CEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh---cCCCEEEEEE
Confidence 588999999865 556778889999999999999887666777777776653 3578888876
No 182
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.05 E-value=1.7e-10 Score=77.00 Aligned_cols=63 Identities=10% Similarity=0.076 Sum_probs=49.4
Q ss_pred eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
..+.+++|||+|+++|......+++.+|++++|+|.++.-..+. ..++..+.. .++|+++++|
T Consensus 72 ~~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~---~~ip~ilv~N 134 (665)
T 2dy1_A 72 RGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAER---LGLPRMVVVT 134 (665)
T ss_dssp TTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHH---TTCCEEEEEE
T ss_pred CCEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHH---ccCCEEEEec
Confidence 35789999999999999999999999999999999887644333 344444443 3688888887
No 183
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.03 E-value=1.9e-10 Score=69.41 Aligned_cols=61 Identities=11% Similarity=0.152 Sum_probs=38.4
Q ss_pred EEEEEEeCCCc-------hhhhcch-------hhhccC-------------CcEEEEEEECCChhHHHHHHHHHHHHHHh
Q psy16649 19 FHINYRDTAGQ-------ERFRTIT-------TAYYRG-------------AMGIMLVYDITNEKSFDNIKNWIRNIEEN 71 (83)
Q Consensus 19 ~~l~i~Dt~g~-------~~~~~~~-------~~~~~~-------------~~~~ilv~d~~~~~s~~~~~~w~~~~~~~ 71 (83)
+.+.+|||+|. +.+..+. ..|++. +|+++++.+.++......-..+++.+..
T Consensus 65 ~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~- 143 (274)
T 3t5d_A 65 LLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE- 143 (274)
T ss_dssp EEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-
T ss_pred EEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-
Confidence 58999999997 2333333 444443 7789988877653322222345555433
Q ss_pred cCCCceEEEEeC
Q psy16649 72 ASANVEKMLLGN 83 (83)
Q Consensus 72 ~~~~~piilvgN 83 (83)
.+|+++|+|
T Consensus 144 ---~~pvi~V~n 152 (274)
T 3t5d_A 144 ---KVNIIPLIA 152 (274)
T ss_dssp ---TSCEEEEES
T ss_pred ---cCCEEEEEe
Confidence 789999987
No 184
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.00 E-value=2.4e-10 Score=73.00 Aligned_cols=79 Identities=16% Similarity=0.109 Sum_probs=52.5
Q ss_pred CCcceeeeeeccCccc-------------------eEEEEEEEeCCCchhhhcc-----------h-hhhccCCcEEEEE
Q psy16649 1 SGENLCTLQIFRGCFQ-------------------HNFHINYRDTAGQERFRTI-----------T-TAYYRGAMGIMLV 49 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------------~~~~l~i~Dt~g~~~~~~~-----------~-~~~~~~~~~~ilv 49 (83)
+|||||+.++....+. ....+.+|||+|+.+.... + ..+++.+++++++
T Consensus 191 vGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv 270 (439)
T 1mky_A 191 VGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIV 270 (439)
T ss_dssp SSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEE
T ss_pred CCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEE
Confidence 7999999998765431 1236789999998554322 1 3467889999999
Q ss_pred EECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 50 YDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 50 ~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
+|.++..+++.. .+...+.+ .+.|+++|+|
T Consensus 271 ~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~N 300 (439)
T 1mky_A 271 LDATQGITRQDQ-RMAGLMER---RGRASVVVFN 300 (439)
T ss_dssp EETTTCCCHHHH-HHHHHHHH---TTCEEEEEEE
T ss_pred EeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEE
Confidence 999987776653 22222222 4689999987
No 185
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.96 E-value=4.5e-10 Score=75.32 Aligned_cols=61 Identities=15% Similarity=0.234 Sum_probs=48.4
Q ss_pred EEEEEeCCCchhh---hcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 20 HINYRDTAGQERF---RTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 20 ~l~i~Dt~g~~~~---~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
.+.+|||+|.... ......|++++|++++|+|.++..+......|.+.+.. ...|+++|+|
T Consensus 175 ~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~---~~~~iiiVlN 238 (695)
T 2j69_A 175 GIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG---RGLTVFFLVN 238 (695)
T ss_dssp TEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT---SCCCEEEEEE
T ss_pred CeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh---hCCCEEEEEE
Confidence 5889999997663 45667899999999999999999888888777655542 3567888876
No 186
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.95 E-value=1.4e-09 Score=62.58 Aligned_cols=77 Identities=14% Similarity=0.251 Sum_probs=50.4
Q ss_pred CCcceeeeeeccCccc-------------eEE----EEEEEeCCCch----------hhhcchhhhc---cCCcEEEEEE
Q psy16649 1 SGENLCTLQIFRGCFQ-------------HNF----HINYRDTAGQE----------RFRTITTAYY---RGAMGIMLVY 50 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~-------------~~~----~l~i~Dt~g~~----------~~~~~~~~~~---~~~~~~ilv~ 50 (83)
|||||++.++....+. ..+ .+.+|||+|+. .++.....++ +.++++++++
T Consensus 37 ~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 116 (210)
T 1pui_A 37 AGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLM 116 (210)
T ss_dssp SSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred CCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEE
Confidence 7999999998866521 111 37899999973 3444444555 5789999999
Q ss_pred ECCChhHHHH--HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 51 DITNEKSFDN--IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 51 d~~~~~s~~~--~~~w~~~~~~~~~~~~piilvgN 83 (83)
|+++..++.. +..|+. . ..+|+++++|
T Consensus 117 d~~~~~~~~~~~~~~~~~----~--~~~~~~~v~n 145 (210)
T 1pui_A 117 DIRHPLKDLDQQMIEWAV----D--SNIAVLVLLT 145 (210)
T ss_dssp ETTSCCCHHHHHHHHHHH----H--TTCCEEEEEE
T ss_pred ECCCCCchhHHHHHHHHH----H--cCCCeEEEEe
Confidence 9998766542 333432 1 4578877765
No 187
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.91 E-value=3.1e-09 Score=65.15 Aligned_cols=64 Identities=14% Similarity=0.064 Sum_probs=55.3
Q ss_pred eEEEEEEEe-CC-----CchhhhcchhhhccCCcEEEEEEECCChh-HHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 17 HNFHINYRD-TA-----GQERFRTITTAYYRGAMGIMLVYDITNEK-SFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 17 ~~~~l~i~D-t~-----g~~~~~~~~~~~~~~~~~~ilv~d~~~~~-s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
..+.++++| +. .++++..+.+.+++++|++++|+|+++++ +++.+++|+..+.. .++|++||+|
T Consensus 48 D~V~~~~~~~~~g~I~~i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~N 118 (302)
T 2yv5_A 48 DYVWGEVVDPNTFAIEEVEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFN 118 (302)
T ss_dssp CEEEEEEEETTEEEEEEECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEEC
T ss_pred eEEEEEEccCCeEEEEeeCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEE
Confidence 567888888 43 48999999999999999999999999997 89999999987754 5789999988
No 188
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.91 E-value=5e-10 Score=68.31 Aligned_cols=61 Identities=11% Similarity=0.199 Sum_probs=40.9
Q ss_pred EEEEEeCCCchh-------------hhcchhhhccCCcEEEEEEECCChhHH-HHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 20 HINYRDTAGQER-------------FRTITTAYYRGAMGIMLVYDITNEKSF-DNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 20 ~l~i~Dt~g~~~-------------~~~~~~~~~~~~~~~ilv~d~~~~~s~-~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
.+.+|||+|..+ +......+++.+|++++|+|.++.... .....+.+.+ ...+.|+++|+|
T Consensus 132 ~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~---~~~~~~~i~v~N 206 (315)
T 1jwy_B 132 NLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV---DPEGKRTIGVIT 206 (315)
T ss_dssp SEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH---CSSCSSEEEEEE
T ss_pred CcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHh---CCCCCcEEEEEc
Confidence 589999999753 566778899999999999998544311 1111222222 234688999887
No 189
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.91 E-value=4.3e-12 Score=83.72 Aligned_cols=38 Identities=21% Similarity=0.102 Sum_probs=24.0
Q ss_pred EEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCCh
Q psy16649 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNE 55 (83)
Q Consensus 18 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 55 (83)
...+.||||+|+++|......+++.+|++|+|+|.++.
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g 291 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQN 291 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEEC
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence 36789999999999999989999999999999999863
No 190
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.87 E-value=2e-09 Score=68.24 Aligned_cols=37 Identities=24% Similarity=0.225 Sum_probs=23.9
Q ss_pred EEEEEEeCCCchh----hhcchh---hhccCCcEEEEEEECCCh
Q psy16649 19 FHINYRDTAGQER----FRTITT---AYYRGAMGIMLVYDITNE 55 (83)
Q Consensus 19 ~~l~i~Dt~g~~~----~~~~~~---~~~~~~~~~ilv~d~~~~ 55 (83)
+.+++|||+|+.+ .+.+.. .+++.+|++++|+|.++.
T Consensus 71 ~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 71 IPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp EEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred EEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 6799999999864 233333 457899999999999886
No 191
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.83 E-value=8.2e-10 Score=65.08 Aligned_cols=57 Identities=11% Similarity=0.064 Sum_probs=35.9
Q ss_pred CCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHH----hc-CCCceEEEEeC
Q psy16649 26 TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE----NA-SANVEKMLLGN 83 (83)
Q Consensus 26 t~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~----~~-~~~~piilvgN 83 (83)
.+||++++.+|..||.++|++|+|.|.+|++.++ .+.-++++.. .. -.++|++|.+|
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlAN 170 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSC 170 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEE
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeC
Confidence 4599999999999999999999999999986554 3332223322 11 15789999987
No 192
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.81 E-value=3.1e-09 Score=66.19 Aligned_cols=63 Identities=11% Similarity=0.160 Sum_probs=40.0
Q ss_pred EEEEEEeCCCc-------------hhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 19 FHINYRDTAGQ-------------ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 19 ~~l~i~Dt~g~-------------~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
..+.+|||+|. +.+..+...|++.++.+++++...+. .+... .|.+.++...+...|+++|+|
T Consensus 130 ~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~-~~~~~-~~~~i~~~~~~~~~~~i~V~N 205 (353)
T 2x2e_A 130 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANS-DLANS-DALKVAKEVDPQGQRTIGVIT 205 (353)
T ss_dssp CSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTS-CGGGC-HHHHHHHHHCTTCTTEEEEEE
T ss_pred CCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCC-ccchh-HHHHHHHHhCcCCCceEEEec
Confidence 46899999995 25667888899888877776643332 12211 232333333445788999887
No 193
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.74 E-value=1.1e-08 Score=64.36 Aligned_cols=36 Identities=19% Similarity=0.067 Sum_probs=28.8
Q ss_pred EEEEEEeCCCchhhh----cch---hhhccCCcEEEEEEECCC
Q psy16649 19 FHINYRDTAGQERFR----TIT---TAYYRGAMGIMLVYDITN 54 (83)
Q Consensus 19 ~~l~i~Dt~g~~~~~----~~~---~~~~~~~~~~ilv~d~~~ 54 (83)
..+++|||+|+.++. .+. ..+++++|++++|+|.++
T Consensus 66 ~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 66 TTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp CEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred eEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 579999999997753 233 335789999999999987
No 194
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.65 E-value=9.9e-09 Score=63.02 Aligned_cols=58 Identities=9% Similarity=0.070 Sum_probs=41.3
Q ss_pred CCCchhhhcchhhhccCCcEEEEEEECCChhHHH---HHHHHHHHHHHhc-CCCceEEEEeC
Q psy16649 26 TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFD---NIKNWIRNIEENA-SANVEKMLLGN 83 (83)
Q Consensus 26 t~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~---~~~~w~~~~~~~~-~~~~piilvgN 83 (83)
.+||++++.+|..||.++||+|+|.|.+|++.++ ++.+....+.+.. -.++|++|.+|
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfAN 255 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSC 255 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEE
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeC
Confidence 4799999999999999999999999999997654 2222223333321 25799999987
No 195
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.61 E-value=1.8e-08 Score=64.32 Aligned_cols=82 Identities=9% Similarity=0.132 Sum_probs=57.1
Q ss_pred CCcceeeeeeccCccc------------------e-EEEEEEEeCCCchh----hhcchhhh---ccCCcEEEEEEECCC
Q psy16649 1 SGENLCTLQIFRGCFQ------------------H-NFHINYRDTAGQER----FRTITTAY---YRGAMGIMLVYDITN 54 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~------------------~-~~~l~i~Dt~g~~~----~~~~~~~~---~~~~~~~ilv~d~~~ 54 (83)
||||||+..+...... . ...+.+||++|... +..+...+ ...++.++.++|++
T Consensus 168 AGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls- 246 (416)
T 1udx_A 168 AGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA- 246 (416)
T ss_dssp GCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT-
T ss_pred CcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc-
Confidence 6999999987665210 1 15688999999732 22333333 34699999999998
Q ss_pred hhHHHHHHHHHHHHHHhcC--CCceEEEEeC
Q psy16649 55 EKSFDNIKNWIRNIEENAS--ANVEKMLLGN 83 (83)
Q Consensus 55 ~~s~~~~~~w~~~~~~~~~--~~~piilvgN 83 (83)
++++.++..|.+++..... ...|.+||+|
T Consensus 247 ~~~~~~ls~g~~el~~la~aL~~~P~ILVlN 277 (416)
T 1udx_A 247 DEPLKTLETLRKEVGAYDPALLRRPSLVALN 277 (416)
T ss_dssp SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEE
Confidence 7888999988888876532 2456666654
No 196
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.57 E-value=2.3e-08 Score=63.50 Aligned_cols=41 Identities=15% Similarity=0.124 Sum_probs=24.2
Q ss_pred EEEEEeCCCchhhhc-------chhhhccCCcEEEEEEECCChhHHHH
Q psy16649 20 HINYRDTAGQERFRT-------ITTAYYRGAMGIMLVYDITNEKSFDN 60 (83)
Q Consensus 20 ~l~i~Dt~g~~~~~~-------~~~~~~~~~~~~ilv~d~~~~~s~~~ 60 (83)
.+++|||+|..++.. ....+++++|++++|+|.++.+++..
T Consensus 87 ~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i~~ 134 (396)
T 2ohf_A 87 FLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDITH 134 (396)
T ss_dssp EEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC--------
T ss_pred ccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCCcchhh
Confidence 599999999887543 45678899999999999998766543
No 197
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.55 E-value=2.9e-08 Score=63.40 Aligned_cols=79 Identities=11% Similarity=0.131 Sum_probs=48.2
Q ss_pred CCcceeeeeeccCccc----------------------------eEEEEEEEeCCCchhhh-------c-----------
Q psy16649 1 SGENLCTLQIFRGCFQ----------------------------HNFHINYRDTAGQERFR-------T----------- 34 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~----------------------------~~~~l~i~Dt~g~~~~~-------~----------- 34 (83)
+|||||+..+....+. ....+.+||++|...+. .
T Consensus 42 aGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~ 121 (418)
T 2qag_C 42 LGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFED 121 (418)
T ss_dssp SSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHHHHHHHHHHHHH
Confidence 6999999887654430 22478999999987642 1
Q ss_pred -------chhhhccCCcEEEEEEECCCh-hHHHHHH-HHHHHHHHhcCCCceEEEEeC
Q psy16649 35 -------ITTAYYRGAMGIMLVYDITNE-KSFDNIK-NWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 35 -------~~~~~~~~~~~~ilv~d~~~~-~s~~~~~-~w~~~~~~~~~~~~piilvgN 83 (83)
+...+++++++.+++|.++.. .+|..+. .|++.+. ..+|+++|+|
T Consensus 122 ~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVin 175 (418)
T 2qag_C 122 YLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIA 175 (418)
T ss_dssp HTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEE
T ss_pred HHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEE
Confidence 123355667776777777664 5677665 6777664 3789999986
No 198
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.48 E-value=1.6e-08 Score=61.92 Aligned_cols=63 Identities=17% Similarity=0.277 Sum_probs=34.0
Q ss_pred EEEEEEEeCCCc-------hhhhcchh-------hhccCCcEEE-----------EEEECCC-hhHHHHHHHHHHHHHHh
Q psy16649 18 NFHINYRDTAGQ-------ERFRTITT-------AYYRGAMGIM-----------LVYDITN-EKSFDNIKNWIRNIEEN 71 (83)
Q Consensus 18 ~~~l~i~Dt~g~-------~~~~~~~~-------~~~~~~~~~i-----------lv~d~~~-~~s~~~~~~w~~~~~~~ 71 (83)
...+.+|||+|+ +++..+.. .|++...+.. ++|..+. ..+|+.+.. +.+++.
T Consensus 75 ~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~--~~l~~l 152 (301)
T 2qnr_A 75 KLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDV--AFMKAI 152 (301)
T ss_dssp CEEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHH--HHHHHH
T ss_pred ccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHH--HHHHHH
Confidence 357899999998 66666665 6666543321 4444332 234555541 333333
Q ss_pred cCCCceEEEEeC
Q psy16649 72 ASANVEKMLLGN 83 (83)
Q Consensus 72 ~~~~~piilvgN 83 (83)
. ..+|+++|+|
T Consensus 153 ~-~~~~iilV~~ 163 (301)
T 2qnr_A 153 H-NKVNIVPVIA 163 (301)
T ss_dssp T-TTSCEEEEEC
T ss_pred H-hcCCEEEEEE
Confidence 3 5678888886
No 199
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.37 E-value=2.8e-07 Score=58.02 Aligned_cols=36 Identities=22% Similarity=0.190 Sum_probs=28.3
Q ss_pred EEEEEEeCCCchhhh----cch---hhhccCCcEEEEEEECCC
Q psy16649 19 FHINYRDTAGQERFR----TIT---TAYYRGAMGIMLVYDITN 54 (83)
Q Consensus 19 ~~l~i~Dt~g~~~~~----~~~---~~~~~~~~~~ilv~d~~~ 54 (83)
..+++|||+|+.++. .+. ..+++.+|++++|+|.++
T Consensus 69 ~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 69 THVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred ceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 479999999987652 232 235789999999999986
No 200
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.33 E-value=5.3e-07 Score=59.26 Aligned_cols=63 Identities=17% Similarity=0.096 Sum_probs=47.3
Q ss_pred eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
+.++++|.||+|+.+|..-...-++-+|++|+|.|...----+...-|. ...+ .++|++++-|
T Consensus 98 ~~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~-~a~~---~~lp~i~fIN 160 (548)
T 3vqt_A 98 RDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMD-VCRM---RATPVMTFVN 160 (548)
T ss_dssp TTEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHH-HHHH---TTCCEEEEEE
T ss_pred CCEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHH-HHHH---hCCceEEEEe
Confidence 5678999999999999988889999999999999998753333334452 3332 3577777655
No 201
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=97.98 E-value=4.1e-07 Score=60.65 Aligned_cols=39 Identities=21% Similarity=0.212 Sum_probs=35.3
Q ss_pred eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCCh
Q psy16649 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNE 55 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 55 (83)
+..++++.||+|+.+|..-...-++-+|++|+|.|...-
T Consensus 65 ~~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~G 103 (638)
T 3j25_A 65 ENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDG 103 (638)
T ss_dssp SSCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCT
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCC
Confidence 567899999999999998889999999999999998864
No 202
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.88 E-value=8e-06 Score=51.31 Aligned_cols=51 Identities=18% Similarity=0.328 Sum_probs=42.2
Q ss_pred CCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 27 AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 27 ~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
..+|+|+.+.+.+++.++++++|+|+++++ ..|.+++.+.. .+.|+++|+|
T Consensus 54 ~~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~-~~~p~ilV~N 104 (368)
T 3h2y_A 54 LTDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV-GNNKVLLVGN 104 (368)
T ss_dssp --CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS-SSSCEEEEEE
T ss_pred CCHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh-CCCcEEEEEE
Confidence 357899999999999999999999999864 56877787766 4789999987
No 203
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=97.54 E-value=0.00023 Score=48.11 Aligned_cols=63 Identities=21% Similarity=0.260 Sum_probs=45.4
Q ss_pred eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
..+.+++.||+|+-+|..-...-++-+|++|+|.|...--.-+...-|....+ .++|.+++-|
T Consensus 83 ~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~----~~lp~i~~iN 145 (709)
T 4fn5_A 83 DNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANK----YGVPRIVYVN 145 (709)
T ss_dssp CCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH----HTCCEEEEEE
T ss_pred CCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHH----cCCCeEEEEc
Confidence 46899999999999998888889999999999999876433232333433222 2466666654
No 204
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.52 E-value=2.3e-05 Score=49.20 Aligned_cols=53 Identities=17% Similarity=0.222 Sum_probs=40.8
Q ss_pred eCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 25 Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
....+++|++..+.+++.++++++|+|++++++ .|.+++.+.. .+.|+++|+|
T Consensus 54 v~~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l-~~~piilV~N 106 (369)
T 3ec1_A 54 VPLDDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA-ADNPILLVGN 106 (369)
T ss_dssp -----CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC-TTSCEEEEEE
T ss_pred CcCCHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh-CCCCEEEEEE
Confidence 334689999999999999999999999999874 5666666665 4788999987
No 205
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=97.42 E-value=5e-05 Score=48.01 Aligned_cols=56 Identities=14% Similarity=0.081 Sum_probs=38.6
Q ss_pred CCcceeeeeeccCccc------------------eEEEEEEEeCCCchhh----hcc---hhhhccCCcEEEEEEECCCh
Q psy16649 1 SGENLCTLQIFRGCFQ------------------HNFHINYRDTAGQERF----RTI---TTAYYRGAMGIMLVYDITNE 55 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~------------------~~~~l~i~Dt~g~~~~----~~~---~~~~~~~~~~~ilv~d~~~~ 55 (83)
+|||||++.+....-. ....+++.||+|--+- ..+ .-...+.+|++++|.|.+++
T Consensus 83 vGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p 162 (376)
T 4a9a_A 83 VGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKP 162 (376)
T ss_dssp HHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSH
T ss_pred CCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCcc
Confidence 5899999887654322 4467899999995321 111 12345789999999999987
Q ss_pred h
Q psy16649 56 K 56 (83)
Q Consensus 56 ~ 56 (83)
.
T Consensus 163 ~ 163 (376)
T 4a9a_A 163 L 163 (376)
T ss_dssp H
T ss_pred H
Confidence 4
No 206
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.38 E-value=0.0002 Score=42.31 Aligned_cols=62 Identities=11% Similarity=-0.028 Sum_probs=35.8
Q ss_pred EEEEEEeCCCchhhhcchh------hhccCCcEEEEEEECCC---hhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 19 FHINYRDTAGQERFRTITT------AYYRGAMGIMLVYDITN---EKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 19 ~~l~i~Dt~g~~~~~~~~~------~~~~~~~~~ilv~d~~~---~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
+.+.||||+|+.+...... ..+.. +.++++.|.+. ...+.....+...... ..+.|+++|+|
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~iv~N 179 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDL--RLGATTIPALN 179 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHH--HHTSCEEEEEC
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhc--ccCCCeEEEEe
Confidence 5799999999987644322 24455 67777777653 3333332222211111 13678889887
No 207
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.31 E-value=6.1e-05 Score=46.96 Aligned_cols=36 Identities=14% Similarity=0.060 Sum_probs=23.2
Q ss_pred EEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhH
Q psy16649 19 FHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKS 57 (83)
Q Consensus 19 ~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s 57 (83)
+.+.++||+|... ........+|.+++|+|.++.+.
T Consensus 167 ~~~iliDT~Gi~~---~~~~l~~~~d~vl~V~d~~~~~~ 202 (349)
T 2www_A 167 YDIILIETVGVGQ---SEFAVADMVDMFVLLLPPAGGDE 202 (349)
T ss_dssp CSEEEEECCCC-----CHHHHHTTCSEEEEEECCC----
T ss_pred CCEEEEECCCcch---hhhhHHhhCCEEEEEEcCCcchh
Confidence 3568999999521 12345678999999999987544
No 208
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=97.24 E-value=0.00015 Score=49.67 Aligned_cols=60 Identities=8% Similarity=0.151 Sum_probs=37.3
Q ss_pred EEEEeCCCch-------------hhhcchhhhc-cCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 21 INYRDTAGQE-------------RFRTITTAYY-RGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 21 l~i~Dt~g~~-------------~~~~~~~~~~-~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
+.++||+|-. ....+...|. ..+|.+++|.|.+..-+-+....+.+++. +...|+++|.|
T Consensus 152 L~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~---~~g~pvIlVlN 225 (772)
T 3zvr_A 152 LTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD---PQGQRTIGVIT 225 (772)
T ss_dssp EEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHC---TTCSSEEEEEE
T ss_pred eEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHH---hcCCCEEEEEe
Confidence 6689999942 2344555666 47899999999886533222223333333 34678888765
No 209
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.07 E-value=0.0002 Score=46.17 Aligned_cols=70 Identities=16% Similarity=0.145 Sum_probs=49.3
Q ss_pred CCcceeeeeeccCcc---c----------------eEEEEEEEeCCCch--hhhcch--------hhhccCCcEEEEEEE
Q psy16649 1 SGENLCTLQIFRGCF---Q----------------HNFHINYRDTAGQE--RFRTIT--------TAYYRGAMGIMLVYD 51 (83)
Q Consensus 1 ~GKss~~~~~~~~~~---~----------------~~~~l~i~Dt~g~~--~~~~~~--------~~~~~~~~~~ilv~d 51 (83)
||||++..++...-. . ......+||..|++ +.+..+ ..++..+.+.++|+|
T Consensus 50 sGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~~l~~~~G~~vV~D 129 (469)
T 1bif_A 50 RGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKFLSEEGGHVAVFD 129 (469)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEe
Confidence 799999988764311 0 11334689999984 334443 667777888899999
Q ss_pred CCChhHHHHHHHHHHHHHHh
Q psy16649 52 ITNEKSFDNIKNWIRNIEEN 71 (83)
Q Consensus 52 ~~~~~s~~~~~~w~~~~~~~ 71 (83)
.++. +++..+.|.+.+++.
T Consensus 130 ~tn~-~~~~R~~~~~~~~~~ 148 (469)
T 1bif_A 130 ATNT-TRERRAMIFNFGEQN 148 (469)
T ss_dssp SCCC-SHHHHHHHHHHHHHH
T ss_pred CCCC-CHHHHHHHHHHHHhc
Confidence 9998 667777888777654
No 210
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=96.93 E-value=0.00036 Score=44.33 Aligned_cols=35 Identities=17% Similarity=0.137 Sum_probs=26.2
Q ss_pred EEEEEeCCCchh-------hhcchhhhccCCcEEEEEEECCC
Q psy16649 20 HINYRDTAGQER-------FRTITTAYYRGAMGIMLVYDITN 54 (83)
Q Consensus 20 ~l~i~Dt~g~~~-------~~~~~~~~~~~~~~~ilv~d~~~ 54 (83)
.+.+||++|... .......+++.+|+++.|+|..+
T Consensus 86 ~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 86 FLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp EEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred ceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 589999999533 22234556789999999999875
No 211
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.81 E-value=0.00094 Score=41.61 Aligned_cols=38 Identities=13% Similarity=0.096 Sum_probs=26.8
Q ss_pred EEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHH
Q psy16649 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSF 58 (83)
Q Consensus 18 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~ 58 (83)
.+.+.|+||+|... ........+|.+++|+|.+..+.+
T Consensus 171 ~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~ 208 (355)
T 3p32_A 171 GFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQL 208 (355)
T ss_dssp TCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTT
T ss_pred CCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccH
Confidence 36789999999422 233345889999999987765443
No 212
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=95.52 E-value=0.013 Score=35.54 Aligned_cols=53 Identities=17% Similarity=0.064 Sum_probs=34.5
Q ss_pred EEeCCCch-hhhcchhhhccCCcEEEEEEECCChhHHH--HHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 23 YRDTAGQE-RFRTITTAYYRGAMGIMLVYDITNEKSFD--NIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 23 i~Dt~g~~-~~~~~~~~~~~~~~~~ilv~d~~~~~s~~--~~~~w~~~~~~~~~~~~piilvgN 83 (83)
|-+.+|+. +........+..+|+++.|+|..++.+.. .+.+|+ .+.|.++|.|
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlN 58 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLN 58 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEE
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEE
Confidence 34557764 45556677889999999999999998865 344443 4677777765
No 213
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.30 E-value=0.0039 Score=38.66 Aligned_cols=37 Identities=11% Similarity=0.045 Sum_probs=24.7
Q ss_pred EEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhH
Q psy16649 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKS 57 (83)
Q Consensus 18 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s 57 (83)
.+.+.++||+|...... ...+.+|++++|+|.+..+.
T Consensus 148 ~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~ 184 (341)
T 2p67_A 148 GYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDD 184 (341)
T ss_dssp TCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC-----
T ss_pred CCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHH
Confidence 35789999999644322 24689999999999876543
No 214
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=95.24 E-value=0.00077 Score=40.52 Aligned_cols=30 Identities=13% Similarity=0.028 Sum_probs=21.5
Q ss_pred CCcceeeeeeccCccc------------eE----EEEEEEeCCCch
Q psy16649 1 SGENLCTLQIFRGCFQ------------HN----FHINYRDTAGQE 30 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~------------~~----~~l~i~Dt~g~~ 30 (83)
+||||++.++...... +. ..+++|||+|..
T Consensus 110 vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtpG~~ 155 (262)
T 3cnl_A 110 TGKSTIINKLKGKRASSVGAQPGITKGIQWFSLENGVKILDTPGIL 155 (262)
T ss_dssp SSHHHHHHHHHTTCC----------CCSCEEECTTSCEEESSCEEC
T ss_pred CCHHHHHHHHhcccccccCCCCCCccceEEEEeCCCEEEEECCCcc
Confidence 6999999988765432 11 257899999964
No 215
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.88 E-value=0.022 Score=32.56 Aligned_cols=34 Identities=12% Similarity=0.171 Sum_probs=21.7
Q ss_pred EEEEEEeCCCchhhhcchhhhc-cCCcEEEEEEECCChh
Q psy16649 19 FHINYRDTAGQERFRTITTAYY-RGAMGIMLVYDITNEK 56 (83)
Q Consensus 19 ~~l~i~Dt~g~~~~~~~~~~~~-~~~~~~ilv~d~~~~~ 56 (83)
+.+.+|||+|+- ..+.++ ..++.+++|+|.++..
T Consensus 109 ~d~iiidt~G~~----~~~~~~~~~~~~~i~vvd~~~~~ 143 (221)
T 2wsm_A 109 CDLLLIENVGNL----ICPVDFDLGENYRVVMVSVTEGD 143 (221)
T ss_dssp CSEEEEEEEEBS----SGGGGCCCSCSEEEEEEEGGGCT
T ss_pred CCEEEEeCCCCC----CCCchhccccCcEEEEEeCCCcc
Confidence 456788888851 112222 3678899999987654
No 216
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=91.82 E-value=0.69 Score=25.84 Aligned_cols=62 Identities=18% Similarity=0.105 Sum_probs=40.0
Q ss_pred EEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhc--CCCceEEEEeC
Q psy16649 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENA--SANVEKMLLGN 83 (83)
Q Consensus 18 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~--~~~~piilvgN 83 (83)
.+.+-|.|+++.. .......+..+|.++++...+.. + ..+...++.+++.. .++.++.+|.|
T Consensus 75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~vv~N 138 (206)
T 4dzz_A 75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPL-D-FSAAGSVVTVLEAQAYSRKVEARFLIT 138 (206)
T ss_dssp TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTT-T-HHHHHHHHHHHTTSCGGGCCEEEEEEC
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHH-H-HHHHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 3567899998754 23444556678999998876544 3 66777666665532 24566666655
No 217
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=91.01 E-value=1.3 Score=25.92 Aligned_cols=63 Identities=5% Similarity=-0.052 Sum_probs=41.7
Q ss_pred eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
..+.+-|.|+++.- .......+..+|.+|++... +..+...+....+.+++.. .+.++.+|.|
T Consensus 143 ~~yD~viiD~pp~~--~~~~~~~l~~aD~vivv~~~-~~~s~~~~~~~~~~l~~~~-~~~~~~vv~N 205 (267)
T 3k9g_A 143 YKYDYIVIDTNPSL--DVTLKNALLCSDYVIIPMTA-EKWAVESLDLFNFFVRKLN-LFLPIFLIIT 205 (267)
T ss_dssp TTCSEEEEEECSSC--SHHHHHHHTTCSEEEEEEES-CTTHHHHHHHHHHHHHTTT-CCCCEEEEEE
T ss_pred cCCCEEEEECcCCc--cHHHHHHHHHCCeEEEEeCC-ChHHHHHHHHHHHHHHHHh-ccCCEEEEEe
Confidence 34667899998743 22344556679999999886 4566777777777776553 4455555544
No 218
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=88.88 E-value=0.47 Score=26.44 Aligned_cols=12 Identities=17% Similarity=0.459 Sum_probs=9.7
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
+|||++...+..
T Consensus 49 ~GKT~l~~~l~~ 60 (226)
T 2chg_A 49 TGKTATAIALAR 60 (226)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 699999887754
No 219
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=87.85 E-value=0.62 Score=24.93 Aligned_cols=14 Identities=7% Similarity=-0.116 Sum_probs=10.4
Q ss_pred CCcceeeeeeccCc
Q psy16649 1 SGENLCTLQIFRGC 14 (83)
Q Consensus 1 ~GKss~~~~~~~~~ 14 (83)
||||++...+....
T Consensus 38 tGKt~lA~~i~~~~ 51 (143)
T 3co5_A 38 SPFETVARYFHKNG 51 (143)
T ss_dssp CCHHHHHGGGCCTT
T ss_pred ccHHHHHHHHHHhC
Confidence 69998887776543
No 220
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=86.33 E-value=3.1 Score=23.77 Aligned_cols=53 Identities=8% Similarity=-0.021 Sum_probs=38.2
Q ss_pred eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhc
Q psy16649 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENA 72 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~ 72 (83)
..+.+-|.|+++.- .......+..+|.++++... +..+...+...++.+++..
T Consensus 117 ~~yD~viiD~p~~~--~~~~~~~l~~ad~viiv~~~-~~~~~~~~~~~~~~l~~~~ 169 (245)
T 3ea0_A 117 SFYDYIIVDFGASI--DHVGVWVLEHLDELCIVTTP-SLQSLRRAGQLLKLCKEFE 169 (245)
T ss_dssp HHCSEEEEEEESSC--CTTHHHHGGGCSEEEEEECS-SHHHHHHHHHHHHHHHTCS
T ss_pred hhCCEEEEeCCCCC--chHHHHHHHHCCEEEEEecC-cHHHHHHHHHHHHHHHHhC
Confidence 34677889988643 22445567789999998765 5788888888888887654
No 221
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=85.37 E-value=0.18 Score=28.47 Aligned_cols=12 Identities=25% Similarity=0.296 Sum_probs=9.2
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
+|||+++.+...
T Consensus 14 sGKTT~ll~~~~ 25 (184)
T 2orw_A 14 SGKTTELLSFVE 25 (184)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 699999866553
No 222
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=84.61 E-value=0.86 Score=27.93 Aligned_cols=13 Identities=8% Similarity=0.296 Sum_probs=10.4
Q ss_pred CCcceeeeeeccC
Q psy16649 1 SGENLCTLQIFRG 13 (83)
Q Consensus 1 ~GKss~~~~~~~~ 13 (83)
+|||+++..+...
T Consensus 55 ~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 55 TGKTVTLRKLWEL 67 (389)
T ss_dssp SSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 6999999887654
No 223
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=80.77 E-value=5.3 Score=22.75 Aligned_cols=52 Identities=12% Similarity=-0.027 Sum_probs=36.1
Q ss_pred eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHh
Q psy16649 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEN 71 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~ 71 (83)
..+.+-|.|+++.-. ......+..+|.++++.+. +..++..+....+.+.+.
T Consensus 130 ~~yD~viiD~pp~~~--~~~~~~l~~aD~viiv~~~-~~~s~~~~~~~~~~~~~~ 181 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIE--HLTRGTAKAVDMMIAVIEP-NLNSIKTGLNIEKLAGDL 181 (254)
T ss_dssp TCCSEEEEEECTTCT--TCCHHHHTTCSEEEEEECS-SHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCccc--HHHHHHHHHCCEEEEecCC-CHHHHHHHHHHHHHHHHc
Confidence 456788999987432 2445566889999999875 567777777766655444
No 224
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=80.62 E-value=3.7 Score=24.70 Aligned_cols=13 Identities=8% Similarity=0.245 Sum_probs=10.4
Q ss_pred CCcceeeeeeccC
Q psy16649 1 SGENLCTLQIFRG 13 (83)
Q Consensus 1 ~GKss~~~~~~~~ 13 (83)
+|||++...+...
T Consensus 59 ~GKT~la~~la~~ 71 (324)
T 3u61_B 59 TGKTTVAKALCHD 71 (324)
T ss_dssp SSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 6999999887654
No 225
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=80.43 E-value=0.35 Score=28.90 Aligned_cols=23 Identities=13% Similarity=-0.022 Sum_probs=13.8
Q ss_pred hhhhccCCcEEEEEEECCChhHH
Q psy16649 36 TTAYYRGAMGIMLVYDITNEKSF 58 (83)
Q Consensus 36 ~~~~~~~~~~~ilv~d~~~~~s~ 58 (83)
......++|.++.|.|..++.+.
T Consensus 15 ~~~~l~~~D~vl~VvDar~P~~~ 37 (262)
T 3cnl_A 15 IKDLLRLVNTVVEVRDARAPFAT 37 (262)
T ss_dssp HHHHHTTCSEEEEEEETTSTTTT
T ss_pred HHHHHhhCCEEEEEeeCCCCCcC
Confidence 34455666666666666665544
No 226
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=79.64 E-value=5.3 Score=22.02 Aligned_cols=39 Identities=18% Similarity=0.204 Sum_probs=27.5
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEe
Q psy16649 42 GAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLG 82 (83)
Q Consensus 42 ~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvg 82 (83)
++|.+.+. .+...+...++..++.+++...+++++++-|
T Consensus 69 ~~diV~lS--~~~~~~~~~~~~~i~~L~~~g~~~i~v~vGG 107 (161)
T 2yxb_A 69 DVDVIGVS--ILNGAHLHLMKRLMAKLRELGADDIPVVLGG 107 (161)
T ss_dssp TCSEEEEE--ESSSCHHHHHHHHHHHHHHTTCTTSCEEEEE
T ss_pred CCCEEEEE--eechhhHHHHHHHHHHHHhcCCCCCEEEEeC
Confidence 56666554 4445677888889999988654578887766
No 227
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=78.10 E-value=4.5 Score=23.70 Aligned_cols=53 Identities=15% Similarity=0.030 Sum_probs=31.5
Q ss_pred eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHH
Q psy16649 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE 70 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~ 70 (83)
..+.+-|.|+++.-.-......-...+|.+|++...+ ..+...+...++.+++
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~-~~s~~~~~~~~~~l~~ 179 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQ-ELTAVIVEKAINMAEE 179 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSS-SCCHHHHHHHHHHHHT
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCc-cchHHHHHHHHHHHHh
Confidence 3467889999875321111111223689888887654 4556666666666654
No 228
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=76.70 E-value=0.17 Score=28.86 Aligned_cols=15 Identities=20% Similarity=0.228 Sum_probs=12.5
Q ss_pred CCcceeeeeeccCcc
Q psy16649 1 SGENLCTLQIFRGCF 15 (83)
Q Consensus 1 ~GKss~~~~~~~~~~ 15 (83)
+||||++.++..+.+
T Consensus 49 vGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 49 SGKTLLIEKLIDNLK 63 (226)
T ss_dssp SSHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhc
Confidence 799999999887644
No 229
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=76.64 E-value=4.3 Score=24.95 Aligned_cols=47 Identities=6% Similarity=0.111 Sum_probs=29.1
Q ss_pred cchhhhccCCcEEEEEEECCChhH-HHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 34 TITTAYYRGAMGIMLVYDITNEKS-FDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 34 ~~~~~~~~~~~~~ilv~d~~~~~s-~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
.+...-..++|.+++|.|..++.+ ...+.+++..... .+.|.+||-|
T Consensus 78 ~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~---~~~~~vivln 125 (307)
T 1t9h_A 78 ELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICIT 125 (307)
T ss_dssp EETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEE
T ss_pred hhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEE
Confidence 344456779999999999987654 4445555433321 3455566654
No 230
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=75.98 E-value=5.7 Score=21.22 Aligned_cols=40 Identities=13% Similarity=0.024 Sum_probs=27.2
Q ss_pred cCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEe
Q psy16649 41 RGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLG 82 (83)
Q Consensus 41 ~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvg 82 (83)
.+++++.+.... ..+...+++.++.+++...+++++++-|
T Consensus 53 ~~~d~v~lS~~~--~~~~~~~~~~i~~l~~~g~~~i~v~vGG 92 (137)
T 1ccw_A 53 TKADAILVSSLY--GQGEIDCKGLRQKCDEAGLEGILLYVGG 92 (137)
T ss_dssp HTCSEEEEEECS--STHHHHHTTHHHHHHHTTCTTCEEEEEE
T ss_pred cCCCEEEEEecC--cCcHHHHHHHHHHHHhcCCCCCEEEEEC
Confidence 367776665544 5666778888888887654468877665
No 231
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=75.62 E-value=1.6 Score=26.94 Aligned_cols=35 Identities=14% Similarity=0.022 Sum_probs=23.3
Q ss_pred EEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChh
Q psy16649 19 FHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEK 56 (83)
Q Consensus 19 ~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 56 (83)
+.+.++||+|...- .......+|.+++++|....+
T Consensus 148 ~~~iliDT~Gi~~~---~~~v~~~~d~vl~v~d~~~~~ 182 (337)
T 2qm8_A 148 FDVILVETVGVGQS---ETAVADLTDFFLVLMLPGAGD 182 (337)
T ss_dssp CCEEEEEECSSSSC---HHHHHTTSSEEEEEECSCC--
T ss_pred CCEEEEECCCCCcc---hhhHHhhCCEEEEEEcCCCcc
Confidence 56889999996321 122346889999999876443
No 232
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=75.06 E-value=0.43 Score=32.06 Aligned_cols=31 Identities=13% Similarity=0.063 Sum_probs=21.1
Q ss_pred CCcceeeeeeccCcc--c----------------------eEEEEEEEeCCCchh
Q psy16649 1 SGENLCTLQIFRGCF--Q----------------------HNFHINYRDTAGQER 31 (83)
Q Consensus 1 ~GKss~~~~~~~~~~--~----------------------~~~~l~i~Dt~g~~~ 31 (83)
+|||||+.++..... . ....+.++||+|-..
T Consensus 49 vGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 49 TGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp SSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred CCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 699999888765431 1 013578999999643
No 233
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=75.01 E-value=9 Score=22.18 Aligned_cols=42 Identities=19% Similarity=0.196 Sum_probs=33.7
Q ss_pred cCCcEEEEEEECCChhHHHHHHHHHHHHHHhcC-CCceEEEEe
Q psy16649 41 RGAMGIMLVYDITNEKSFDNIKNWIRNIEENAS-ANVEKMLLG 82 (83)
Q Consensus 41 ~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~-~~~piilvg 82 (83)
.++|.+.+.++.....+...+++.++.+++... +++|+++-|
T Consensus 142 ~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~~~~~~~v~v~vGG 184 (215)
T 3ezx_A 142 HKGEKVLLVGSALMTTSMLGQKDLMDRLNEEKLRDSVKCMFGG 184 (215)
T ss_dssp TTTSCEEEEEECSSHHHHTHHHHHHHHHHHTTCGGGSEEEEES
T ss_pred cCCCEEEEEchhcccCcHHHHHHHHHHHHHcCCCCCCEEEEEC
Confidence 467888887788888899999999999988753 478887765
No 234
>3ro3_B Minsc, peptide of protein inscuteable homolog; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=74.70 E-value=2.7 Score=15.34 Aligned_cols=13 Identities=15% Similarity=0.797 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHH
Q psy16649 58 FDNIKNWIRNIEE 70 (83)
Q Consensus 58 ~~~~~~w~~~~~~ 70 (83)
.+++++|.+.++-
T Consensus 7 vDSV~rWmeDLr~ 19 (22)
T 3ro3_B 7 VDSVQRWMEDLKL 19 (26)
T ss_pred hHHHHHHHHHHHh
Confidence 3568899998864
No 235
>4djd_C C/Fe-SP, corrinoid/iron-sulfur protein large subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_C* 4djf_C*
Probab=74.64 E-value=15 Score=24.01 Aligned_cols=75 Identities=12% Similarity=0.224 Sum_probs=45.6
Q ss_pred CcceeeeeeccCccc-eEEEEEEEeCCCchhhhcchhhh----c------cCCcEEEEEEECCChhHHHHHHHHHHHHHH
Q psy16649 2 GENLCTLQIFRGCFQ-HNFHINYRDTAGQERFRTITTAY----Y------RGAMGIMLVYDITNEKSFDNIKNWIRNIEE 70 (83)
Q Consensus 2 GKss~~~~~~~~~~~-~~~~l~i~Dt~g~~~~~~~~~~~----~------~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~ 70 (83)
|.|.+ +|+....++ ..+-+.|||+...+........+ + -++|.+-+.+...+++.+. ..++.+++
T Consensus 77 GEtvL-~rhE~tf~n~p~ia~~V~D~~~e~~~~~~~~~~~~~~~~rvg~~~~~D~ial~~~s~dpe~~~---~vVk~V~e 152 (446)
T 4djd_C 77 DETEL-FRHDKRFYHETAIAIQVSDNLSSEELKAKVEAINGLNFDRVGQHYTIQAIAIRHDADDPAAFK---AAVASVAA 152 (446)
T ss_dssp CCCCS-SGGGSCCCSCCEEEEEEETTSCHHHHHHHHHHHTTCCEEETTEEECCCEEEEECCSSSTHHHH---HHHHHHHT
T ss_pred CeeeE-EeCCcCCCCCCeEEEEEeCCCChHHHHHHHHHHHHHHHHHHHHhccCcEEEEEeCCCCHHHHH---HHHHHHHH
Confidence 55665 666544333 55899999997654443322222 1 2688888888777775544 34445554
Q ss_pred hcCCCceEEEEe
Q psy16649 71 NASANVEKMLLG 82 (83)
Q Consensus 71 ~~~~~~piilvg 82 (83)
. -++|++|.+
T Consensus 153 ~--~dvPL~IDS 162 (446)
T 4djd_C 153 A--TQLNLVLMA 162 (446)
T ss_dssp T--CCSEEEEEC
T ss_pred h--CCCCEEEec
Confidence 3 478887753
No 236
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=74.19 E-value=10 Score=21.80 Aligned_cols=50 Identities=10% Similarity=-0.005 Sum_probs=35.9
Q ss_pred EEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHH
Q psy16649 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE 70 (83)
Q Consensus 18 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~ 70 (83)
.+.+-|.|+++.-. ......+..+|.++++.+. +..+...+...++.+..
T Consensus 113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~-~~~s~~~~~~~~~~l~~ 162 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNP-EVSSVRDSDRILGILAS 162 (260)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECS-SHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecC-ChhHHHHHHHHHHHHHH
Confidence 57788999987432 2445566789999998875 57777777777777654
No 237
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=72.13 E-value=11 Score=21.29 Aligned_cols=61 Identities=15% Similarity=0.090 Sum_probs=39.5
Q ss_pred EEEEEEEeCCCc-hhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 18 NFHINYRDTAGQ-ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 18 ~~~l~i~Dt~g~-~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
.+.+-|.|+++. .. ......+..+|.+|++... +..+...+...++.+++.. +.++.+|.|
T Consensus 67 ~yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~-~~~~~~~~~~~~~~l~~~~--~~~~~vv~N 128 (209)
T 3cwq_A 67 KYQNIVIDTQARPED--EDLEALADGCDLLVIPSTP-DALALDALMLTIETLQKLG--NNRFRILLT 128 (209)
T ss_dssp GCSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECS-SHHHHHHHHHHHHHHHHTC--SSSEEEEEC
T ss_pred cCCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecC-CchhHHHHHHHHHHHHhcc--CCCEEEEEE
Confidence 356778999875 32 2334556788998888765 5677777777777776633 334555544
No 238
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=70.15 E-value=14 Score=21.50 Aligned_cols=62 Identities=10% Similarity=0.183 Sum_probs=36.7
Q ss_pred EEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHH---HhcCCCceEE-EEe
Q psy16649 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIE---ENASANVEKM-LLG 82 (83)
Q Consensus 18 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~---~~~~~~~pii-lvg 82 (83)
.+.+-|.|+++.-.. .....+..+|.+|++...+ ..++..+...++.+. +...++++++ +|-
T Consensus 111 ~yD~iiiD~pp~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~ 176 (257)
T 1wcv_1 111 GYDLVLLDAPPSLSP--LTLNALAAAEGVVVPVQAE-YYALEGVAGLLATLEEVRAGLNPRLRLLGILV 176 (257)
T ss_dssp TCSEEEEECCSSCCH--HHHHHHHHCSEEEEEEESS-THHHHHHHHHHHHHHHHHHHTCTTCEEEEEEE
T ss_pred CCCEEEEeCCCCCCH--HHHHHHHHCCeEEEEecCc-hHHHHHHHHHHHHHHHHHHHhCCCceEEEEEE
Confidence 466789999875322 2233456789999998864 455665555444443 3323556653 443
No 239
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=70.00 E-value=2.7 Score=25.40 Aligned_cols=13 Identities=15% Similarity=0.332 Sum_probs=9.9
Q ss_pred CCcceeeeeeccC
Q psy16649 1 SGENLCTLQIFRG 13 (83)
Q Consensus 1 ~GKss~~~~~~~~ 13 (83)
+|||++...+...
T Consensus 69 ~GKT~la~~la~~ 81 (353)
T 1sxj_D 69 TGKTSTILALTKE 81 (353)
T ss_dssp SSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 6999998876543
No 240
>3rl5_A Metallophosphoesterase mpped2; alpha-beta fold, metallophosphodiesterase, active site mutan nucleotide polymorphism, hydrolase; 1.26A {Rattus norvegicus} PDB: 3rl3_A* 3rl4_A*
Probab=69.83 E-value=4.5 Score=24.82 Aligned_cols=59 Identities=14% Similarity=0.031 Sum_probs=36.9
Q ss_pred EEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 19 FHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 19 ~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
--+.|-|+-+.... + -+..+|.+|+.=|+++..+.++++...+.+.+.. ....+++.||
T Consensus 61 ri~~iSD~H~~~~~--l---~i~~~D~vi~aGDl~~~g~~~e~~~~~~~L~~l~-~~~v~~V~GN 119 (296)
T 3rl5_A 61 RFVCISDTRSRTDG--I---QMPYGDILLHTGDFTELGLPSEVKKFNDWLGNLP-YEYKIVIAGN 119 (296)
T ss_dssp EEEEEBCCTTCCTT--C---CCCSCSEEEECSCCSSSCCHHHHHHHHHHHHTSC-CSEEEECCCT
T ss_pred EEEEEeeCCCCcch--h---ccCCCCEEEECCcccCCCCHHHHHHHHHHHHhCC-CCeEEEEcCC
Confidence 34566788765321 1 2468999999999998776666666555555432 2224556676
No 241
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=69.68 E-value=9.9 Score=23.06 Aligned_cols=13 Identities=15% Similarity=0.365 Sum_probs=10.4
Q ss_pred CCcceeeeeeccC
Q psy16649 1 SGENLCTLQIFRG 13 (83)
Q Consensus 1 ~GKss~~~~~~~~ 13 (83)
+|||+++..+...
T Consensus 55 ~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 55 TGKTAVARLVLRR 67 (387)
T ss_dssp SSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 6999999887653
No 242
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=69.30 E-value=0.53 Score=26.73 Aligned_cols=13 Identities=15% Similarity=0.013 Sum_probs=10.0
Q ss_pred CCcceeeeeeccC
Q psy16649 1 SGENLCTLQIFRG 13 (83)
Q Consensus 1 ~GKss~~~~~~~~ 13 (83)
+|||++...+...
T Consensus 63 ~GKT~la~~l~~~ 75 (242)
T 3bos_A 63 SGRTHLIHAACAR 75 (242)
T ss_dssp SSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 6999998877543
No 243
>1zpw_X Hypothetical protein TT1823; hyphotetical protein, structural genom NPPSFA, national project on protein structural and function analyses; 1.64A {Thermus thermophilus} SCOP: d.58.58.1
Probab=67.59 E-value=9.8 Score=18.93 Aligned_cols=17 Identities=18% Similarity=0.296 Sum_probs=11.8
Q ss_pred EEEEEEECCChhHHHHH
Q psy16649 45 GIMLVYDITNEKSFDNI 61 (83)
Q Consensus 45 ~~ilv~d~~~~~s~~~~ 61 (83)
.++++||+++......+
T Consensus 5 ~~lV~YDI~~~kr~~kv 21 (90)
T 1zpw_X 5 LYAVAYDIPDDTRRVKL 21 (90)
T ss_dssp EEEEEEECCCHHHHHHH
T ss_pred EEEEEEeCCChHHHHHH
Confidence 47899999886444443
No 244
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=67.40 E-value=14 Score=20.96 Aligned_cols=39 Identities=13% Similarity=0.067 Sum_probs=27.5
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHHhcC-CCceEEEEe
Q psy16649 42 GAMGIMLVYDITNEKSFDNIKNWIRNIEENAS-ANVEKMLLG 82 (83)
Q Consensus 42 ~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~-~~~piilvg 82 (83)
+++++.+ +.....+...+++.++.+++... +++|+++-|
T Consensus 139 ~~d~v~l--S~~~~~~~~~~~~~i~~l~~~~~~~~~~v~vGG 178 (210)
T 1y80_A 139 QPDIVGM--SALLTTTMMNMKSTIDALIAAGLRDRVKVIVGG 178 (210)
T ss_dssp CCSEEEE--ECCSGGGTHHHHHHHHHHHHTTCGGGCEEEEES
T ss_pred CCCEEEE--eccccccHHHHHHHHHHHHhcCCCCCCeEEEEC
Confidence 5565554 45556778888999999987642 468888766
No 245
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=66.42 E-value=18 Score=21.42 Aligned_cols=59 Identities=19% Similarity=0.263 Sum_probs=33.1
Q ss_pred eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHH---HHhcCCCceE
Q psy16649 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNI---EENASANVEK 78 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~---~~~~~~~~pi 78 (83)
..+.+-|.|+++.-... ...-+..+|.+|++...+ ..+...+...++.+ ++...+++++
T Consensus 153 ~~yD~IiiD~pp~~~~~--~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~~ 214 (298)
T 2oze_A 153 SDYDLIIIDTVPTPSVY--TNNAIVASDYVMIPLQAE-EESTNNIQNYISYLIDLQEQFNPGLDM 214 (298)
T ss_dssp GGCSEEEEEECSSCSHH--HHHHHHHCSEEEEEECGG-GCCHHHHHHHHHHHHHHHHHHCTTCEE
T ss_pred cCCCEEEEECCCCccHH--HHHHHHHCCeEEEEecCc-HHHHHHHHHHHHHHHHHHHHhCCCCeE
Confidence 44678899998754322 222334589999887643 44455555444444 3333345653
No 246
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=66.40 E-value=7.4 Score=23.86 Aligned_cols=40 Identities=23% Similarity=0.350 Sum_probs=29.4
Q ss_pred cCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEE
Q psy16649 41 RGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLL 81 (83)
Q Consensus 41 ~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilv 81 (83)
-++|+++++--. ..-+-+.+-.+++.+.+..++++|++|-
T Consensus 101 ~Gadavlv~~P~-~~~s~~~l~~~f~~va~a~~~~lPiilY 140 (313)
T 3dz1_A 101 AGAAGVMIAPPP-SLRTDEQITTYFRQATEAIGDDVPWVLQ 140 (313)
T ss_dssp HTCSEEEECCCT-TCCSHHHHHHHHHHHHHHHCTTSCEEEE
T ss_pred cCCCEEEECCCC-CCCCHHHHHHHHHHHHHhCCCCCcEEEE
Confidence 479999886433 3446778888999998877556998873
No 247
>1uoz_A Putative cellulase; hydrolase, glycoside hydrolase, family 6; HET: GLC SSG; 1.10A {Mycobacterium tuberculosis} SCOP: c.6.1.1 PDB: 1up3_A* 1up0_A* 1up2_A*
Probab=66.15 E-value=10 Score=23.58 Aligned_cols=39 Identities=18% Similarity=0.493 Sum_probs=27.6
Q ss_pred CCcEEEEEEECCChh----------HHHHHHHHHHHHHHhcCCCceEEEE
Q psy16649 42 GAMGIMLVYDITNEK----------SFDNIKNWIRNIEENASANVEKMLL 81 (83)
Q Consensus 42 ~~~~~ilv~d~~~~~----------s~~~~~~w~~~~~~~~~~~~piilv 81 (83)
+...++++|++-+++ +.++-+.|++.+....+ +.|+++|
T Consensus 89 g~~pvlVvY~lP~RDC~a~ssgG~~~~~~Yk~~Id~ia~~i~-~~~~vvI 137 (315)
T 1uoz_A 89 GAMPVLTLYGIPHRDCGSYASGGFATGTDYRGWIDAVASGLG-SSPATII 137 (315)
T ss_dssp TCBCEEEECCCTTBGGGSTTCBCCSSHHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCCcEEEEeCCCCCCchhhccCCCCCHHHHHHHHHHHHHHhC-CCceEEE
Confidence 344578889998875 56667789999988663 4455554
No 248
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=65.77 E-value=15 Score=20.33 Aligned_cols=58 Identities=5% Similarity=-0.054 Sum_probs=35.0
Q ss_pred EEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHH---hcCCCceEEEEe
Q psy16649 19 FHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE---NASANVEKMLLG 82 (83)
Q Consensus 19 ~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~---~~~~~~piilvg 82 (83)
+.+.+.|....+ ..-+..+|++|+..-+-.-.--..++.|++.+.. ..-.+-|+.+++
T Consensus 35 ~~v~~~~l~~~~------~~~l~~aD~ii~gsP~y~g~~~~~lk~fld~~~~~~~~~l~gk~~~~~~ 95 (188)
T 2ark_A 35 TEVRLKHVDEAT------KEDVLWADGLAVGSPTNMGLVSWKMKRFFDDVLGDLWGEIDGKIACAFS 95 (188)
T ss_dssp EEEEEEETTTCC------HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHTGGGTTTSCTTCEEEEEE
T ss_pred CeEEEEEhhhCC------HHHHHhCCEEEEEeCccCCcCCHHHHHHHHHHhhhhHHHhCCCeEEEEE
Confidence 456666765432 2345678999999877765555567788877754 111344555544
No 249
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=65.50 E-value=2.4 Score=23.66 Aligned_cols=12 Identities=8% Similarity=0.116 Sum_probs=9.2
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
+|||+++..+..
T Consensus 56 ~GKT~l~~~~~~ 67 (250)
T 1njg_A 56 VGKTSIARLLAK 67 (250)
T ss_dssp SCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 699999877653
No 250
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=63.86 E-value=19 Score=20.93 Aligned_cols=33 Identities=12% Similarity=0.204 Sum_probs=18.4
Q ss_pred eEEEEEEEeCCCchh-hhcchhhh-ccCCcEEEEE
Q psy16649 17 HNFHINYRDTAGQER-FRTITTAY-YRGAMGIMLV 49 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~-~~~~~~~~-~~~~~~~ilv 49 (83)
..+.+.+.++.+.+. ........ -+++|++|++
T Consensus 39 ~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~ 73 (288)
T 3gv0_A 39 TQYHLVVTPHIHAKDSMVPIRYILETGSADGVIIS 73 (288)
T ss_dssp SSCEEEECCBSSGGGTTHHHHHHHHHTCCSEEEEE
T ss_pred cCCEEEEecCCcchhHHHHHHHHHHcCCccEEEEe
Confidence 446667776654332 22232322 2689999876
No 251
>3exc_X Uncharacterized protein; ferredoxin fold, double split beta-alpha-beta fold, dimer, C aspartate, RNA'ASE, hydrolase; 2.25A {Sulfolobus solfataricus} SCOP: d.58.58.0
Probab=63.74 E-value=12 Score=18.70 Aligned_cols=15 Identities=27% Similarity=0.733 Sum_probs=10.7
Q ss_pred cEEEEEEECCChhHH
Q psy16649 44 MGIMLVYDITNEKSF 58 (83)
Q Consensus 44 ~~~ilv~d~~~~~s~ 58 (83)
--++++||+++...-
T Consensus 4 M~vlV~YDI~~~krr 18 (91)
T 3exc_X 4 MKLLVVYDVSDDSKR 18 (91)
T ss_dssp CEEEEEEECCSHHHH
T ss_pred eEEEEEEeCCCchHH
Confidence 347899999876443
No 252
>2ivy_A Hypothetical protein SSO1404; structural genomics, unknown function, CAS, RNAI, crispr; 1.4A {Sulfolobus solfataricus} SCOP: d.58.58.1 PDB: 2i8e_A
Probab=63.66 E-value=11 Score=19.16 Aligned_cols=16 Identities=25% Similarity=0.470 Sum_probs=10.2
Q ss_pred EEEEEEECCChhHHHH
Q psy16649 45 GIMLVYDITNEKSFDN 60 (83)
Q Consensus 45 ~~ilv~d~~~~~s~~~ 60 (83)
-++++||+++......
T Consensus 4 ~~lV~YDI~~~kr~~k 19 (101)
T 2ivy_A 4 LYLIFYDITDDNLRNR 19 (101)
T ss_dssp EEEEEEEECCHHHHHH
T ss_pred EEEEEEeCCChHHHHH
Confidence 4678888876643333
No 253
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=63.13 E-value=12 Score=22.80 Aligned_cols=39 Identities=18% Similarity=0.163 Sum_probs=29.7
Q ss_pred cCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEE
Q psy16649 41 RGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKML 80 (83)
Q Consensus 41 ~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piil 80 (83)
.++|+++++--.-.+-+-+.+-.+++.+.+.. +++|++|
T Consensus 105 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~-~~lPiil 143 (303)
T 2wkj_A 105 YGFDAVSAVTPFYYPFSFEEHCDHYRAIIDSA-DGLPMVV 143 (303)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHHHH-TTCCEEE
T ss_pred CCCCEEEecCCCCCCCCHHHHHHHHHHHHHhC-CCCCEEE
Confidence 48999998865555557788888998888766 3488876
No 254
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=62.34 E-value=0.95 Score=26.16 Aligned_cols=36 Identities=14% Similarity=0.196 Sum_probs=19.5
Q ss_pred ccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEe
Q psy16649 40 YRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLG 82 (83)
Q Consensus 40 ~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvg 82 (83)
++..|++++ ++-+-|.+....++.+. ..+.|+++.|
T Consensus 89 ~~~~DvIlI----DEaQFfk~~ve~~~~L~---~~gk~VI~~G 124 (195)
T 1w4r_A 89 ALGVAVIGI----DEGQFFPDIVEFCEAMA---NAGKTVIVAA 124 (195)
T ss_dssp HHTCSEEEE----SSGGGCTTHHHHHHHHH---HTTCEEEEEE
T ss_pred ccCCCEEEE----EchhhhHHHHHHHHHHH---HCCCeEEEEe
Confidence 456676655 45555533333444443 2467888765
No 255
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=61.79 E-value=12 Score=21.98 Aligned_cols=56 Identities=9% Similarity=0.201 Sum_probs=27.4
Q ss_pred eEEEEEEEeCCCchhhhcchhhh-ccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEe
Q psy16649 17 HNFHINYRDTAGQERFRTITTAY-YRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLG 82 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~~~~~-~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvg 82 (83)
..+.+.+.++.+.+....+.... -++.||+|++-.-.+.+ .++.+.+ .++|+|+++
T Consensus 39 ~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~~-------~~~~l~~---~~iPvV~~~ 95 (294)
T 3qk7_A 39 RGLDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQPEDF-------RLQYLQK---QNFPFLALG 95 (294)
T ss_dssp TTCEEEEEEECTTCCCHHHHHHHHHTCCSEEEECSCCSSCH-------HHHHHHH---TTCCEEEES
T ss_pred CCCEEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCCCChH-------HHHHHHh---CCCCEEEEC
Confidence 34556666654422223333333 35899988863222221 1222222 468888775
No 256
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=61.47 E-value=2.9 Score=24.87 Aligned_cols=13 Identities=8% Similarity=0.036 Sum_probs=9.8
Q ss_pred CCcceeeeeeccC
Q psy16649 1 SGENLCTLQIFRG 13 (83)
Q Consensus 1 ~GKss~~~~~~~~ 13 (83)
+|||++...+...
T Consensus 53 ~GKt~la~~l~~~ 65 (323)
T 1sxj_B 53 IGKTTSVHCLAHE 65 (323)
T ss_dssp SSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 6999988776544
No 257
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=61.11 E-value=19 Score=21.87 Aligned_cols=38 Identities=18% Similarity=0.332 Sum_probs=30.0
Q ss_pred cCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEE
Q psy16649 41 RGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKML 80 (83)
Q Consensus 41 ~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piil 80 (83)
.++|+++++--.-.+-+-+.+-.+++.+.+.. ++|++|
T Consensus 98 ~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~--~lPiil 135 (300)
T 3eb2_A 98 LGADGILAILEAYFPLKDAQIESYFRAIADAV--EIPVVI 135 (300)
T ss_dssp HTCSEEEEEECCSSCCCHHHHHHHHHHHHHHC--SSCEEE
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHC--CCCEEE
Confidence 48999999876666667788888999998776 488876
No 258
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=60.52 E-value=5.9 Score=22.82 Aligned_cols=13 Identities=15% Similarity=0.232 Sum_probs=9.9
Q ss_pred CCcceeeeeeccC
Q psy16649 1 SGENLCTLQIFRG 13 (83)
Q Consensus 1 ~GKss~~~~~~~~ 13 (83)
||||++...+...
T Consensus 50 tGKT~la~~la~~ 62 (262)
T 2qz4_A 50 CGKTLLAKAVATE 62 (262)
T ss_dssp SSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 6999988877553
No 259
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=60.43 E-value=1.1 Score=24.70 Aligned_cols=9 Identities=22% Similarity=0.327 Sum_probs=7.8
Q ss_pred CCcceeeee
Q psy16649 1 SGENLCTLQ 9 (83)
Q Consensus 1 ~GKss~~~~ 9 (83)
|||||++..
T Consensus 20 sGKSTl~~~ 28 (171)
T 4gp7_A 20 SGKSTFAKK 28 (171)
T ss_dssp SCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 799999984
No 260
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=60.30 E-value=2.1 Score=25.27 Aligned_cols=9 Identities=11% Similarity=0.242 Sum_probs=6.7
Q ss_pred CCceEEEEe
Q psy16649 74 ANVEKMLLG 82 (83)
Q Consensus 74 ~~~piilvg 82 (83)
.++|+++.|
T Consensus 127 ~gi~Vi~~G 135 (219)
T 3e2i_A 127 DGHRVIVAG 135 (219)
T ss_dssp TTCEEEEEE
T ss_pred CCCEEEEee
Confidence 578888765
No 261
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=59.73 E-value=20 Score=19.87 Aligned_cols=59 Identities=14% Similarity=0.236 Sum_probs=34.3
Q ss_pred EEEEeCCCch-hhhcchhhhcc--CCcEEEEEEECCChh-HHHHHHHHHHHHHHhcCCCce-EEEEeC
Q psy16649 21 INYRDTAGQE-RFRTITTAYYR--GAMGIMLVYDITNEK-SFDNIKNWIRNIEENASANVE-KMLLGN 83 (83)
Q Consensus 21 l~i~Dt~g~~-~~~~~~~~~~~--~~~~~ilv~d~~~~~-s~~~~~~w~~~~~~~~~~~~p-iilvgN 83 (83)
+.+=|+-+.. ....+.. ..+ ++|.+++.=|+.+.. ..+....+++.+.+. ..| +++.||
T Consensus 9 ~~iSD~H~~~~~~~~~~~-~~~~~~~D~vi~~GDl~~~~~~~~~~~~~~~~l~~~---~~pv~~v~GN 72 (228)
T 1uf3_A 9 LATSNPMGDLEALEKFVK-LAPDTGADAIALIGNLMPKAAKSRDYAAFFRILSEA---HLPTAYVPGP 72 (228)
T ss_dssp EEEECCTTCHHHHHHHHT-HHHHHTCSEEEEESCSSCTTCCHHHHHHHHHHHGGG---CSCEEEECCT
T ss_pred EEEeeccCCHHHHHHHHH-HHhhcCCCEEEECCCCCCCCCCHHHHHHHHHHHHhc---CCcEEEECCC
Confidence 4567876642 2333222 222 789999999998765 555555566665442 234 455676
No 262
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A
Probab=59.53 E-value=18 Score=21.46 Aligned_cols=41 Identities=12% Similarity=0.329 Sum_probs=25.9
Q ss_pred cCCcEEEEEEECCCh---hHHHHHHHHHHHHHHhcCCCceE-EEEeC
Q psy16649 41 RGAMGIMLVYDITNE---KSFDNIKNWIRNIEENASANVEK-MLLGN 83 (83)
Q Consensus 41 ~~~~~~ilv~d~~~~---~s~~~~~~w~~~~~~~~~~~~pi-ilvgN 83 (83)
.++|.+++.=|+.+. +.++.+.++++.+.+.. ++|+ ++.||
T Consensus 65 ~~~d~vi~~GDl~~~~~~~~~~~~~~~l~~l~~~~--~~pv~~v~GN 109 (330)
T 3ib7_A 65 LRPDAIVFTGDLADKGEPAAYRKLRGLVEPFAAQL--GAELVWVMGN 109 (330)
T ss_dssp CCCSEEEECSCCBTTCCHHHHHHHHHHHHHHHHHH--TCEEEECCCT
T ss_pred CCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHhhc--CCCEEEeCCC
Confidence 478999988888774 45556666666664432 3444 45565
No 263
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=58.84 E-value=4.5 Score=25.37 Aligned_cols=29 Identities=10% Similarity=0.024 Sum_probs=17.4
Q ss_pred CCcceeeeeeccCccce--EEEEEEEeCCCc
Q psy16649 1 SGENLCTLQIFRGCFQH--NFHINYRDTAGQ 29 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~~--~~~l~i~Dt~g~ 29 (83)
+|||++..++..+.-.. .-..-..|+.+.
T Consensus 39 sGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s 69 (333)
T 3io5_A 39 SFKSNFGLTMVSSYMRQYPDAVCLFYDSEFG 69 (333)
T ss_dssp SSHHHHHHHHHHHHHHHCTTCEEEEEESSCC
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEEeccch
Confidence 69999998876543211 123445677653
No 264
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=57.92 E-value=19 Score=20.76 Aligned_cols=54 Identities=9% Similarity=0.169 Sum_probs=31.4
Q ss_pred EeCCC-chhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhc-CCCceEEEE
Q psy16649 24 RDTAG-QERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENA-SANVEKMLL 81 (83)
Q Consensus 24 ~Dt~g-~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~-~~~~piilv 81 (83)
.|++. .+....-...-++++..+|+...-.-..+ .-..| |+.... ..++|||+|
T Consensus 60 rDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s--~~v~w--EIe~Ai~~~~~PII~V 115 (189)
T 3hyn_A 60 RDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANS--RALRE--EMNYGIGTKGLPVIVI 115 (189)
T ss_dssp TSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCC--HHHHH--HHHHHTTTTCCCEEEE
T ss_pred cccccHHHHHHHHHHHHHHhcCcEEEEEecCcccc--chhHH--HHHHHHHhcCCcEEEE
Confidence 45444 33344445566778888888765443433 22334 665554 468898876
No 265
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=57.68 E-value=1 Score=24.97 Aligned_cols=12 Identities=8% Similarity=0.113 Sum_probs=9.8
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
|||||++..+..
T Consensus 16 sGKSTL~~~L~~ 27 (180)
T 1kgd_A 16 VGRRHIKNTLIT 27 (180)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHh
Confidence 799999888754
No 266
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=57.44 E-value=14 Score=22.50 Aligned_cols=29 Identities=24% Similarity=0.155 Sum_probs=18.0
Q ss_pred CCcceeeeeeccCccce------EEEEEEEeCCCc
Q psy16649 1 SGENLCTLQIFRGCFQH------NFHINYRDTAGQ 29 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~~------~~~l~i~Dt~g~ 29 (83)
||||++..++....... .-..-+.|+.+.
T Consensus 118 sGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~ 152 (324)
T 2z43_A 118 SGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT 152 (324)
T ss_dssp SSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred CCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 79999999876542111 234456777663
No 267
>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}
Probab=57.35 E-value=25 Score=22.02 Aligned_cols=45 Identities=13% Similarity=0.214 Sum_probs=29.3
Q ss_pred hccCCcEEEEEEECCCh------hHHHH----HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 39 YYRGAMGIMLVYDITNE------KSFDN----IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 39 ~~~~~~~~ilv~d~~~~------~s~~~----~~~w~~~~~~~~~~~~piilvgN 83 (83)
-++++|.+|+.-.+..+ +-|+. ++...+.+.++.++++.+++|+|
T Consensus 97 a~~~advVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsN 151 (345)
T 4h7p_A 97 AFDGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGN 151 (345)
T ss_dssp HTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred HhCCCCEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCC
Confidence 36789999998765543 22221 23455566666667888888887
No 268
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=57.34 E-value=1.1 Score=25.36 Aligned_cols=10 Identities=20% Similarity=0.308 Sum_probs=6.8
Q ss_pred CCcceeeeee
Q psy16649 1 SGENLCTLQI 10 (83)
Q Consensus 1 ~GKss~~~~~ 10 (83)
|||||++..+
T Consensus 33 sGKSTl~~~l 42 (208)
T 3c8u_A 33 SGKSTLSNPL 42 (208)
T ss_dssp SCTHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 6777777554
No 269
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=57.18 E-value=18 Score=21.82 Aligned_cols=39 Identities=18% Similarity=0.359 Sum_probs=29.9
Q ss_pred ccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEE
Q psy16649 40 YRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKML 80 (83)
Q Consensus 40 ~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piil 80 (83)
-.++|+++++--.-.+-+-+.+-.+++.+.+.. ++|+++
T Consensus 93 ~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~--~lPiil 131 (292)
T 2vc6_A 93 NAGADGVLIVSPYYNKPTQEGIYQHFKAIDAAS--TIPIIV 131 (292)
T ss_dssp HTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC--SSCEEE
T ss_pred HcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhC--CCCEEE
Confidence 348999998866555567788888888888765 588876
No 270
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=57.03 E-value=1.8 Score=28.08 Aligned_cols=11 Identities=9% Similarity=0.202 Sum_probs=9.4
Q ss_pred CCcceeeeeec
Q psy16649 1 SGENLCTLQIF 11 (83)
Q Consensus 1 ~GKss~~~~~~ 11 (83)
+|||+|+.++.
T Consensus 78 ~GKStLLN~ll 88 (447)
T 3q5d_A 78 KGKSFLMDFML 88 (447)
T ss_dssp SSHHHHHHHHH
T ss_pred CcHHHHHHHHh
Confidence 69999998875
No 271
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=56.57 E-value=19 Score=21.71 Aligned_cols=38 Identities=16% Similarity=0.302 Sum_probs=29.2
Q ss_pred cCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEE
Q psy16649 41 RGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKML 80 (83)
Q Consensus 41 ~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piil 80 (83)
.++|+++++--.-.+-+-+.+-.+++.+.+.. ++|+++
T Consensus 94 ~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~--~lPiil 131 (289)
T 2yxg_A 94 VGADAVLSITPYYNKPTQEGLRKHFGKVAESI--NLPIVL 131 (289)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC--SSCEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc--CCCEEE
Confidence 48999998865555567788888888887765 588876
No 272
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=56.28 E-value=19 Score=21.76 Aligned_cols=39 Identities=13% Similarity=0.283 Sum_probs=29.7
Q ss_pred ccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEE
Q psy16649 40 YRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKML 80 (83)
Q Consensus 40 ~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piil 80 (83)
-.++|+++++--.-.+-+-+.+-.+++.+.+.. ++|+++
T Consensus 93 ~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~--~lPiil 131 (294)
T 2ehh_A 93 EVGADGALVVVPYYNKPTQRGLYEHFKTVAQEV--DIPIII 131 (294)
T ss_dssp HTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC--CSCEEE
T ss_pred hcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc--CCCEEE
Confidence 348999998865555567788888988888765 588876
No 273
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=56.25 E-value=14 Score=22.37 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=29.3
Q ss_pred cCCcEEEEEEECCCh-hHHHHHHHHHHHHHHhcC-CCceEEE
Q psy16649 41 RGAMGIMLVYDITNE-KSFDNIKNWIRNIEENAS-ANVEKML 80 (83)
Q Consensus 41 ~~~~~~ilv~d~~~~-~s~~~~~~w~~~~~~~~~-~~~piil 80 (83)
.++|+++++--.-.+ -+-+.+-.+++.+.+..+ .++|+++
T Consensus 97 ~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~p~~~lPiil 138 (294)
T 3b4u_A 97 AGARNILLAPPSYFKNVSDDGLFAWFSAVFSKIGKDARDILV 138 (294)
T ss_dssp TTCSEEEECCCCSSCSCCHHHHHHHHHHHHHHHCTTCCCEEE
T ss_pred cCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCCCcEEE
Confidence 489999988655555 567788889888887651 1688876
No 274
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=56.02 E-value=20 Score=21.82 Aligned_cols=39 Identities=21% Similarity=0.339 Sum_probs=29.3
Q ss_pred cCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEE
Q psy16649 41 RGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLL 81 (83)
Q Consensus 41 ~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilv 81 (83)
.++|+++++--.-.+-+-+.+-++++.+.+.. ++|++|-
T Consensus 102 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~--~lPiilY 140 (301)
T 3m5v_A 102 HGADGILSVAPYYNKPTQQGLYEHYKAIAQSV--DIPVLLY 140 (301)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC--SSCEEEE
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhC--CCCEEEE
Confidence 47999999865545556678888998888765 6888763
No 275
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=55.80 E-value=18 Score=21.86 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=28.8
Q ss_pred cCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEE
Q psy16649 41 RGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKML 80 (83)
Q Consensus 41 ~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piil 80 (83)
.++|+++++--.-.+-+-+.+-.+++.+.+.. ++|+++
T Consensus 96 ~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~--~lPiil 133 (292)
T 3daq_A 96 LGADAIMLITPYYNKTNQRGLVKHFEAIADAV--KLPVVL 133 (292)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHHHH--CSCEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhC--CCCEEE
Confidence 38999999865545556678888998888765 688876
No 276
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=55.76 E-value=1.1 Score=24.94 Aligned_cols=12 Identities=8% Similarity=0.252 Sum_probs=9.5
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
|||||++..+..
T Consensus 18 sGKSTl~~~L~~ 29 (205)
T 3tr0_A 18 AGKTSLVRALVK 29 (205)
T ss_dssp SCHHHHHHHHHH
T ss_pred CCHHHHHHHHHh
Confidence 799998887654
No 277
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=55.72 E-value=27 Score=20.09 Aligned_cols=52 Identities=13% Similarity=-0.024 Sum_probs=35.1
Q ss_pred eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHh
Q psy16649 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEN 71 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~ 71 (83)
..+.+-|.|+++.-. .........+|.+|++... +..+...+...++.+.+.
T Consensus 109 ~~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~-~~~~~~~~~~~~~~l~~~ 160 (263)
T 1hyq_A 109 ESTDILLLDAPAGLE--RSAVIAIAAAQELLLVVNP-EISSITDGLKTKIVAERL 160 (263)
T ss_dssp HTCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECS-SHHHHHHHHHHHHHHHHH
T ss_pred hhCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCC-ChhHHHHHHHHHHHHHhc
Confidence 346678999986432 2334456678988888764 466777777777777655
No 278
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=55.70 E-value=30 Score=20.57 Aligned_cols=61 Identities=13% Similarity=0.058 Sum_probs=39.2
Q ss_pred eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhc-CCCceEE
Q psy16649 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENA-SANVEKM 79 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~-~~~~pii 79 (83)
..+.+-|.|+++.-... .....+..+|.++++.+ .+..++..+...++.+++.. ..+++++
T Consensus 155 ~~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~-~~~~s~~~~~~~~~~l~~~~~~~~~~~~ 216 (307)
T 3end_A 155 DDTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTA-NDFDSIYAMNRIIAAVQAKSKNYKVRLA 216 (307)
T ss_dssp SSCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEEC-SSHHHHHHHHHHHHHHHTTTTTCCCEEE
T ss_pred ccCCEEEEeCCCccchH-HHHHHHHHCCEEEEEec-CcHHHHHHHHHHHHHHHHhhhcCCCceE
Confidence 34677899997642211 12345678999998875 45777888888777776642 2455543
No 279
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=55.61 E-value=21 Score=21.59 Aligned_cols=38 Identities=13% Similarity=0.062 Sum_probs=29.2
Q ss_pred cCCcEEEEEEECCCh-hHHHHHHHHHHHHHHhcCCCceEEE
Q psy16649 41 RGAMGIMLVYDITNE-KSFDNIKNWIRNIEENASANVEKML 80 (83)
Q Consensus 41 ~~~~~~ilv~d~~~~-~s~~~~~~w~~~~~~~~~~~~piil 80 (83)
.++|+++++--.-.+ -+-+.+-.+++.+.+.. ++|++|
T Consensus 90 ~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~--~lPiil 128 (293)
T 1w3i_A 90 FDIVGIASYAPYYYPRMSEKHLVKYFKTLCEVS--PHPVYL 128 (293)
T ss_dssp SCCSEEEEECCCSCSSCCHHHHHHHHHHHHHHC--SSCEEE
T ss_pred cCCCEEEEcCCCCCCCCCHHHHHHHHHHHHhhC--CCCEEE
Confidence 489999988665555 57788888998888765 588876
No 280
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=55.54 E-value=12 Score=24.40 Aligned_cols=13 Identities=8% Similarity=0.112 Sum_probs=10.4
Q ss_pred CCcceeeeeeccC
Q psy16649 1 SGENLCTLQIFRG 13 (83)
Q Consensus 1 ~GKss~~~~~~~~ 13 (83)
+|||++...+...
T Consensus 88 tGKTtla~~la~~ 100 (516)
T 1sxj_A 88 IGKTTAAHLVAQE 100 (516)
T ss_dssp SSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 6999998887654
No 281
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=55.50 E-value=1.1 Score=24.66 Aligned_cols=13 Identities=15% Similarity=0.066 Sum_probs=10.5
Q ss_pred CCcceeeeeeccC
Q psy16649 1 SGENLCTLQIFRG 13 (83)
Q Consensus 1 ~GKss~~~~~~~~ 13 (83)
|||||+...+...
T Consensus 20 sGKSTl~~~La~~ 32 (191)
T 1zp6_A 20 SGKSTIAEALANL 32 (191)
T ss_dssp SCHHHHHHHHHTC
T ss_pred CCHHHHHHHHHhc
Confidence 7999999887554
No 282
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=55.41 E-value=19 Score=21.93 Aligned_cols=39 Identities=26% Similarity=0.307 Sum_probs=29.5
Q ss_pred ccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEE
Q psy16649 40 YRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKML 80 (83)
Q Consensus 40 ~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piil 80 (83)
-.++|+++++--.-.+-+-+.+-.+++.+.+.. ++|++|
T Consensus 105 ~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~--~lPiil 143 (301)
T 1xky_A 105 EVGVDAVMLVAPYYNKPSQEGMYQHFKAIAEST--PLPVML 143 (301)
T ss_dssp HTTCSEEEEECCCSSCCCHHHHHHHHHHHHHTC--SSCEEE
T ss_pred hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhc--CCCEEE
Confidence 348999999866555667788888888887654 688876
No 283
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=55.11 E-value=21 Score=21.59 Aligned_cols=38 Identities=21% Similarity=0.275 Sum_probs=28.5
Q ss_pred cCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEE
Q psy16649 41 RGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKML 80 (83)
Q Consensus 41 ~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piil 80 (83)
-++|+++++--.-.+-+-+.+-.+++.+.+.. ++|+++
T Consensus 95 ~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~--~lPiil 132 (291)
T 3tak_A 95 LGADAALLVTPYYNKPTQEGLYQHYKAIAEAV--ELPLIL 132 (291)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC--CSCEEE
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhc--CCCEEE
Confidence 47999998855545556677888888888765 688876
No 284
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=54.82 E-value=1.2 Score=24.00 Aligned_cols=12 Identities=0% Similarity=-0.017 Sum_probs=9.2
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
|||||+...+..
T Consensus 12 sGKsT~~~~L~~ 23 (173)
T 3kb2_A 12 CFKSTVAAKLSK 23 (173)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 689988887654
No 285
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=54.59 E-value=21 Score=21.91 Aligned_cols=39 Identities=23% Similarity=0.349 Sum_probs=29.3
Q ss_pred cCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEE
Q psy16649 41 RGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLL 81 (83)
Q Consensus 41 ~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilv 81 (83)
.++|+++++--.-.+-+-+.+-.+++.+.+.. ++|++|-
T Consensus 117 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~--~lPiilY 155 (314)
T 3qze_A 117 GGADACLLVTPYYNKPTQEGMYQHFRHIAEAV--AIPQILY 155 (314)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHHS--CSCEEEE
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhc--CCCEEEE
Confidence 48999999865445556677888999988765 6888763
No 286
>1dfm_A Endonuclease bglii; restriction endonuclease, restriction enzyme, protein-DNA complex, hydrolase/DNA complex; HET: DNA; 1.50A {Bacillus subtilis} SCOP: c.52.1.5 PDB: 1d2i_A* 1es8_A
Probab=54.44 E-value=21 Score=21.16 Aligned_cols=27 Identities=19% Similarity=0.315 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHhcCCCceEEEEe
Q psy16649 56 KSFDNIKNWIRNIEENASANVEKMLLG 82 (83)
Q Consensus 56 ~s~~~~~~w~~~~~~~~~~~~piilvg 82 (83)
..|+.+..-++.+.+.....+|++|+|
T Consensus 143 ~yyEq~l~~L~~~~~~~~~~vPI~vIG 169 (223)
T 1dfm_A 143 LYYEQAQNQLNSLAEYNVFDVPIRLVG 169 (223)
T ss_dssp CCHHHHHHHHHHHHHTTCCCSCEEEEE
T ss_pred hhHHHHHHHhhhhccCCCCCCCEEEEE
Confidence 346665555555554455899999998
No 287
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=54.43 E-value=1.6 Score=24.04 Aligned_cols=13 Identities=23% Similarity=0.475 Sum_probs=10.0
Q ss_pred CCcceeeeeeccC
Q psy16649 1 SGENLCTLQIFRG 13 (83)
Q Consensus 1 ~GKss~~~~~~~~ 13 (83)
|||||++.-+...
T Consensus 44 aGKTTLlr~l~g~ 56 (158)
T 1htw_A 44 AGKTTLTRGMLQG 56 (158)
T ss_dssp SSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHh
Confidence 7999998876543
No 288
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=54.17 E-value=22 Score=21.69 Aligned_cols=38 Identities=21% Similarity=0.267 Sum_probs=29.0
Q ss_pred cCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEE
Q psy16649 41 RGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKML 80 (83)
Q Consensus 41 ~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piil 80 (83)
.++|+++++--.-.+-+-+.+-.+++.+.+.. ++|++|
T Consensus 110 ~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~--~lPiil 147 (304)
T 3cpr_A 110 AGADGLLVVTPYYSKPSQEGLLAHFGAIAAAT--EVPICL 147 (304)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC--CSCEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc--CCCEEE
Confidence 48999998865555556778888888887765 588876
No 289
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=53.98 E-value=1.3 Score=24.95 Aligned_cols=12 Identities=25% Similarity=0.326 Sum_probs=8.1
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
|||||++..+..
T Consensus 17 sGKSTl~~~l~~ 28 (211)
T 3asz_A 17 SGKTTLAQALAR 28 (211)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 688887766543
No 290
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=53.93 E-value=1.6 Score=24.35 Aligned_cols=10 Identities=20% Similarity=0.265 Sum_probs=7.4
Q ss_pred CCcceeeeee
Q psy16649 1 SGENLCTLQI 10 (83)
Q Consensus 1 ~GKss~~~~~ 10 (83)
|||||++..+
T Consensus 11 sGKTTLl~~l 20 (178)
T 1ye8_A 11 VGKTTLVKKI 20 (178)
T ss_dssp SSHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 6899887654
No 291
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=53.78 E-value=22 Score=21.54 Aligned_cols=39 Identities=21% Similarity=0.249 Sum_probs=29.0
Q ss_pred cCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEE
Q psy16649 41 RGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLL 81 (83)
Q Consensus 41 ~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilv 81 (83)
.++|+++++--.-.+-+-+.+-.+++.+.+.. ++|+++-
T Consensus 101 ~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~--~lPiilY 139 (297)
T 3flu_A 101 AGADYTLSVVPYYNKPSQEGIYQHFKTIAEAT--SIPMIIY 139 (297)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC--CSCEEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhC--CCCEEEE
Confidence 47999998865545556677888888888765 6888763
No 292
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=53.32 E-value=21 Score=21.57 Aligned_cols=38 Identities=18% Similarity=0.188 Sum_probs=28.9
Q ss_pred cCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEE
Q psy16649 41 RGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKML 80 (83)
Q Consensus 41 ~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piil 80 (83)
.++|+++++--.-.+-+-+.+-.+++.+.+.. ++|+++
T Consensus 98 ~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~--~lPiil 135 (293)
T 1f6k_A 98 LGYDCLSAVTPFYYKFSFPEIKHYYDTIIAET--GSNMIV 135 (293)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHHHH--CCCEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhC--CCCEEE
Confidence 48999999866555566778888888888765 468776
No 293
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=53.04 E-value=23 Score=21.74 Aligned_cols=39 Identities=13% Similarity=0.230 Sum_probs=29.2
Q ss_pred cCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEE
Q psy16649 41 RGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLL 81 (83)
Q Consensus 41 ~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilv 81 (83)
.++|+++++--.-.+-+-+.+-.+++.+.+.. ++|++|-
T Consensus 116 ~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~--~lPiilY 154 (315)
T 3si9_A 116 AGADAVLVVTPYYNRPNQRGLYTHFSSIAKAI--SIPIIIY 154 (315)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC--SSCEEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHcC--CCCEEEE
Confidence 47999998855545556677888998888765 6888763
No 294
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=52.88 E-value=1.3 Score=23.98 Aligned_cols=12 Identities=17% Similarity=0.246 Sum_probs=9.7
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
|||||+...+..
T Consensus 15 sGKSTl~~~La~ 26 (173)
T 1kag_A 15 AGKSTIGRQLAQ 26 (173)
T ss_dssp SCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 799999887754
No 295
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=52.54 E-value=1.4 Score=24.51 Aligned_cols=11 Identities=18% Similarity=0.464 Sum_probs=8.7
Q ss_pred CCcceeeeeec
Q psy16649 1 SGENLCTLQIF 11 (83)
Q Consensus 1 ~GKss~~~~~~ 11 (83)
|||||++..+.
T Consensus 12 aGKsTl~~~L~ 22 (186)
T 3a00_A 12 TGKSTLLKKLF 22 (186)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 69999887765
No 296
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=52.32 E-value=5.5 Score=22.35 Aligned_cols=44 Identities=16% Similarity=0.128 Sum_probs=26.8
Q ss_pred hccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEe
Q psy16649 39 YYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLG 82 (83)
Q Consensus 39 ~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvg 82 (83)
-+..+|++|++.-.-+-.--..++.|++.+....-.+-|+.+++
T Consensus 66 ~i~~aD~ii~~sP~y~~~~p~~lK~~ld~l~~~~~~gK~~~~~~ 109 (197)
T 2vzf_A 66 ATCNADGLIVATPIYKASYTGLLKAFLDILPQFALAGKAALPLA 109 (197)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHTTSCTTTTTTCEEEEEE
T ss_pred HHHHCCEEEEEeCccCCCCCHHHHHHHHhccccccCCCEEEEEE
Confidence 46689999999877665444455666665533222345666554
No 297
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=52.27 E-value=1.3 Score=24.81 Aligned_cols=13 Identities=8% Similarity=0.220 Sum_probs=10.5
Q ss_pred CCcceeeeeeccC
Q psy16649 1 SGENLCTLQIFRG 13 (83)
Q Consensus 1 ~GKss~~~~~~~~ 13 (83)
|||||++.++...
T Consensus 17 sGKTTl~~~l~~~ 29 (174)
T 1np6_A 17 TGKTTLLKKLIPA 29 (174)
T ss_dssp SCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHh
Confidence 7999999887653
No 298
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}
Probab=51.91 E-value=30 Score=21.28 Aligned_cols=45 Identities=9% Similarity=0.105 Sum_probs=28.4
Q ss_pred hhccCCcEEEEEEECCCh------hHHH----HHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 38 AYYRGAMGIMLVYDITNE------KSFD----NIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 38 ~~~~~~~~~ilv~d~~~~------~s~~----~~~~w~~~~~~~~~~~~piilvgN 83 (83)
.-+++||.+|+......+ +.+. -++...+.+.+.+ ++..+++++|
T Consensus 69 ~a~~~aDvVIi~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vivvtN 123 (321)
T 3p7m_A 69 KDLENSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNC-PNAFVICITN 123 (321)
T ss_dssp GGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCS
T ss_pred HHHCCCCEEEEcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHC-CCcEEEEecC
Confidence 345688999987644322 2222 2345666777776 7888888877
No 299
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=51.89 E-value=31 Score=19.67 Aligned_cols=38 Identities=5% Similarity=0.085 Sum_probs=23.3
Q ss_pred EEEEeCCCch-hhhcchhhh-ccCCcEEEEEEECCChhHH
Q psy16649 21 INYRDTAGQE-RFRTITTAY-YRGAMGIMLVYDITNEKSF 58 (83)
Q Consensus 21 l~i~Dt~g~~-~~~~~~~~~-~~~~~~~ilv~d~~~~~s~ 58 (83)
+.+-|+-+.. .+..+.... -.++|.++++=|+.+....
T Consensus 9 ~~iSDlH~~~~~~~~~l~~~~~~~~D~vi~~GDl~~~~~~ 48 (260)
T 2yvt_A 9 LAIKNFKERFDLLPKLKGVIAEKQPDILVVVGNILKNEAL 48 (260)
T ss_dssp EEEECCTTCGGGHHHHHHHHHHHCCSEEEEESCCCCCHHH
T ss_pred EEEeecCCChHHHHHHHHHHHhcCCCEEEECCCCCCccCc
Confidence 4567876543 333332221 2478999999999886543
No 300
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=51.85 E-value=16 Score=19.31 Aligned_cols=27 Identities=15% Similarity=0.188 Sum_probs=19.8
Q ss_pred ChhHHHHHHHHHHHHHHhcCCCceEEE
Q psy16649 54 NEKSFDNIKNWIRNIEENASANVEKML 80 (83)
Q Consensus 54 ~~~s~~~~~~w~~~~~~~~~~~~piil 80 (83)
.+.||+.=..-...+++.-++.+|+|+
T Consensus 9 ~~~~~e~R~~e~~~ir~kyP~riPVIv 35 (118)
T 3rui_B 9 SEYPFEKRKAESERIADRFKNRIPVIC 35 (118)
T ss_dssp TSSCHHHHHHHHHHHHHHCSSEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHhCCCceEEEE
Confidence 355677666667777777778899886
No 301
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=51.43 E-value=20 Score=21.86 Aligned_cols=38 Identities=18% Similarity=0.334 Sum_probs=28.5
Q ss_pred cCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEE
Q psy16649 41 RGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKML 80 (83)
Q Consensus 41 ~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piil 80 (83)
.++|+++++--.-.+-+-+.+-.+++.+.+.. ++|++|
T Consensus 106 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~--~lPiil 143 (306)
T 1o5k_A 106 LGANGVLVVTPYYNKPTQEGLYQHYKYISERT--DLGIVV 143 (306)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHTTC--SSCEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhC--CCCEEE
Confidence 48999998865555556688888888887654 688876
No 302
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=51.39 E-value=20 Score=21.61 Aligned_cols=38 Identities=21% Similarity=0.384 Sum_probs=28.6
Q ss_pred cCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEE
Q psy16649 41 RGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKML 80 (83)
Q Consensus 41 ~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piil 80 (83)
.++|+++++--.-.+-+-+.+-.+++.+.+.. ++|+++
T Consensus 95 ~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~--~lPiil 132 (292)
T 2ojp_A 95 SGIVGCLTVTPYYNRPSQEGLYQHFKAIAEHT--DLPQIL 132 (292)
T ss_dssp SSCSEEEEECCCSSCCCHHHHHHHHHHHHTTC--SSCEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc--CCCEEE
Confidence 47999998865555557778888888887654 588876
No 303
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=51.37 E-value=12 Score=19.20 Aligned_cols=43 Identities=9% Similarity=0.171 Sum_probs=23.6
Q ss_pred hccCCcEEEEEEECCChhHHHH--HHHHHHHHHHhcCCCceEEEEe
Q psy16649 39 YYRGAMGIMLVYDITNEKSFDN--IKNWIRNIEENASANVEKMLLG 82 (83)
Q Consensus 39 ~~~~~~~~ilv~d~~~~~s~~~--~~~w~~~~~~~~~~~~piilvg 82 (83)
.+..+|+++++...-.-.-... ++.+++.+.... .+.|+.++|
T Consensus 43 ~l~~~d~vi~g~p~y~~~~~~~~~~~~fl~~l~~~l-~~k~~~~~~ 87 (137)
T 2fz5_A 43 DVASKDVILLGCPAMGSEELEDSVVEPFFTDLAPKL-KGKKVGLFG 87 (137)
T ss_dssp HHHTCSEEEEECCCBTTTBCCHHHHHHHHHHHGGGC-SSCEEEEEE
T ss_pred HHhcCCEEEEEccccCCCCCCHHHHHHHHHHhhhhc-CCCEEEEEE
Confidence 3567888888876543222222 556666554322 455666554
No 304
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=51.29 E-value=1.5 Score=23.52 Aligned_cols=10 Identities=20% Similarity=0.235 Sum_probs=8.3
Q ss_pred CCcceeeeee
Q psy16649 1 SGENLCTLQI 10 (83)
Q Consensus 1 ~GKss~~~~~ 10 (83)
|||||+...+
T Consensus 12 sGKsT~a~~L 21 (179)
T 3lw7_A 12 SGKSEFAKLL 21 (179)
T ss_dssp SCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 6888888877
No 305
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=51.19 E-value=25 Score=20.48 Aligned_cols=13 Identities=15% Similarity=0.268 Sum_probs=10.4
Q ss_pred CCcceeeeeeccC
Q psy16649 1 SGENLCTLQIFRG 13 (83)
Q Consensus 1 ~GKss~~~~~~~~ 13 (83)
||||++...+...
T Consensus 62 tGKT~la~~la~~ 74 (285)
T 3h4m_A 62 TGKTLLAKAVATE 74 (285)
T ss_dssp SSHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHH
Confidence 6999999887654
No 306
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=51.13 E-value=18 Score=19.01 Aligned_cols=25 Identities=12% Similarity=0.060 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHHhcCCCceEEE
Q psy16649 56 KSFDNIKNWIRNIEENASANVEKML 80 (83)
Q Consensus 56 ~s~~~~~~w~~~~~~~~~~~~piil 80 (83)
.+|+.-..-...++..-++.+|+++
T Consensus 9 ~~~e~R~~e~~~ir~kyP~~IPVIv 33 (117)
T 1eo6_A 9 HSLEHRCVESAKIRAKYPDRVPVIV 33 (117)
T ss_dssp SCHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4566555566677777778899886
No 307
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=51.05 E-value=1.5 Score=23.78 Aligned_cols=12 Identities=17% Similarity=0.282 Sum_probs=10.4
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
|||||+...+..
T Consensus 13 sGKST~a~~L~~ 24 (181)
T 1ly1_A 13 SGKSTWAREFIA 24 (181)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHh
Confidence 799999988875
No 308
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=50.93 E-value=1.5 Score=24.74 Aligned_cols=12 Identities=17% Similarity=0.130 Sum_probs=9.8
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
||||+++..+..
T Consensus 36 sGKSTll~~l~g 47 (231)
T 4a74_A 36 SGKTQLAHTLAV 47 (231)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 799999988754
No 309
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=50.89 E-value=2 Score=24.29 Aligned_cols=11 Identities=9% Similarity=0.045 Sum_probs=8.5
Q ss_pred CCcceeeeeec
Q psy16649 1 SGENLCTLQIF 11 (83)
Q Consensus 1 ~GKss~~~~~~ 11 (83)
|||||++..+.
T Consensus 31 sGKSTLl~~l~ 41 (207)
T 1znw_A 31 VGKSTVVRCLR 41 (207)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 79999887654
No 310
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=50.89 E-value=4.6 Score=24.01 Aligned_cols=13 Identities=23% Similarity=0.394 Sum_probs=10.1
Q ss_pred CCcceeeeeeccC
Q psy16649 1 SGENLCTLQIFRG 13 (83)
Q Consensus 1 ~GKss~~~~~~~~ 13 (83)
+|||++...+...
T Consensus 57 ~GKT~la~~l~~~ 69 (327)
T 1iqp_A 57 VGKTTAALALARE 69 (327)
T ss_dssp SSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 6999998877654
No 311
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=50.72 E-value=2 Score=24.91 Aligned_cols=14 Identities=14% Similarity=-0.171 Sum_probs=10.5
Q ss_pred CCcceeeeeeccCc
Q psy16649 1 SGENLCTLQIFRGC 14 (83)
Q Consensus 1 ~GKss~~~~~~~~~ 14 (83)
|||||++.-+..-.
T Consensus 41 sGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 41 SGKSTLLYILGLLD 54 (224)
T ss_dssp SCHHHHHHHHTTSS
T ss_pred CCHHHHHHHHhcCC
Confidence 79999988765433
No 312
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=50.69 E-value=18 Score=22.13 Aligned_cols=39 Identities=18% Similarity=0.291 Sum_probs=29.2
Q ss_pred cCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEE
Q psy16649 41 RGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLL 81 (83)
Q Consensus 41 ~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilv 81 (83)
-++|+++++--.-.+-+-+.+-.+++.+.+.. ++|+++-
T Consensus 105 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~--~lPiilY 143 (316)
T 3e96_A 105 AGADAVMIHMPIHPYVTAGGVYAYFRDIIEAL--DFPSLVY 143 (316)
T ss_dssp HTCSEEEECCCCCSCCCHHHHHHHHHHHHHHH--TSCEEEE
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhC--CCCEEEE
Confidence 37999998754445557788888999998776 4888763
No 313
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=50.63 E-value=24 Score=22.01 Aligned_cols=38 Identities=21% Similarity=0.334 Sum_probs=28.9
Q ss_pred cCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEE
Q psy16649 41 RGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKML 80 (83)
Q Consensus 41 ~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piil 80 (83)
.++|+++++--.-.+-+-+.+-.+++.+.+.. ++|++|
T Consensus 125 ~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~--~lPiil 162 (343)
T 2v9d_A 125 AGADGIVVINPYYWKVSEANLIRYFEQVADSV--TLPVML 162 (343)
T ss_dssp HTCSEEEEECCSSSCCCHHHHHHHHHHHHHTC--SSCEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc--CCCEEE
Confidence 48999998865555557788888888887654 688876
No 314
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=50.57 E-value=2 Score=25.08 Aligned_cols=14 Identities=21% Similarity=-0.199 Sum_probs=10.4
Q ss_pred CCcceeeeeeccCc
Q psy16649 1 SGENLCTLQIFRGC 14 (83)
Q Consensus 1 ~GKss~~~~~~~~~ 14 (83)
|||||++.-+..-.
T Consensus 42 sGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 42 SGKSTMLNIIGCLD 55 (235)
T ss_dssp SSHHHHHHHHTTSS
T ss_pred CcHHHHHHHHhcCC
Confidence 79999988765443
No 315
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=50.31 E-value=21 Score=21.69 Aligned_cols=38 Identities=13% Similarity=0.260 Sum_probs=29.1
Q ss_pred cCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEE
Q psy16649 41 RGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKML 80 (83)
Q Consensus 41 ~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piil 80 (83)
.++|+++++--.-.+-+-+.+-.+++.+.+.. ++|+++
T Consensus 94 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~--~lPiil 131 (297)
T 2rfg_A 94 AGADAVLCVAGYYNRPSQEGLYQHFKMVHDAI--DIPIIV 131 (297)
T ss_dssp HTCSEEEECCCTTTCCCHHHHHHHHHHHHHHC--SSCEEE
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhc--CCCEEE
Confidence 48999998865555567788888888887765 588876
No 316
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=50.12 E-value=21 Score=21.89 Aligned_cols=38 Identities=18% Similarity=0.218 Sum_probs=28.6
Q ss_pred cCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEE
Q psy16649 41 RGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKML 80 (83)
Q Consensus 41 ~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piil 80 (83)
.++|+++++--.-.+-+-+.+-.+++.+.+.. ++|++|
T Consensus 105 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~--~lPiil 142 (314)
T 3d0c_A 105 SGADCVMIHQPVHPYITDAGAVEYYRNIIEAL--DAPSII 142 (314)
T ss_dssp TTCSEEEECCCCCSCCCHHHHHHHHHHHHHHS--SSCEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhC--CCCEEE
Confidence 48999998865555556677888888888765 588876
No 317
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=50.04 E-value=20 Score=21.85 Aligned_cols=39 Identities=13% Similarity=0.319 Sum_probs=28.7
Q ss_pred cCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEE
Q psy16649 41 RGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLL 81 (83)
Q Consensus 41 ~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilv 81 (83)
.++|+++++--.-.+-+-+.+-.+++.+.+.. ++|++|-
T Consensus 109 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~--~lPiilY 147 (304)
T 3l21_A 109 EGAHGLLVVTPYYSKPPQRGLQAHFTAVADAT--ELPMLLY 147 (304)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHTSC--SSCEEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc--CCCEEEE
Confidence 47999998865545556677888888887654 6888763
No 318
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=49.96 E-value=44 Score=22.06 Aligned_cols=39 Identities=23% Similarity=0.276 Sum_probs=24.9
Q ss_pred EEEEEEEeCCCchhhh-cchhh---h--ccCCcEEEEEEECCChh
Q psy16649 18 NFHINYRDTAGQERFR-TITTA---Y--YRGAMGIMLVYDITNEK 56 (83)
Q Consensus 18 ~~~l~i~Dt~g~~~~~-~~~~~---~--~~~~~~~ilv~d~~~~~ 56 (83)
.+.+.|+||+|..... .+... . ...++.+++|.|.+...
T Consensus 183 ~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~ 227 (504)
T 2j37_W 183 NFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQ 227 (504)
T ss_dssp TCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCT
T ss_pred CCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccc
Confidence 3578999999964321 11110 1 23789999999987653
No 319
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=49.91 E-value=34 Score=19.97 Aligned_cols=57 Identities=11% Similarity=0.211 Sum_probs=28.8
Q ss_pred eEEEEEEEeCCCchh-hhcchh-hhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 17 HNFHINYRDTAGQER-FRTITT-AYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~-~~~~~~-~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
..+.+.+.++.+... ...... ..-++.||+|++-...+.+ .++.+.+ .++|+|++++
T Consensus 41 ~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~~-------~~~~l~~---~~iPvV~i~~ 99 (295)
T 3hcw_A 41 HGYGTQTTVSNNMNDLMDEVYKMIKQRMVDAFILLYSKENDP-------IKQMLID---ESMPFIVIGK 99 (295)
T ss_dssp TTCEEEECCCCSHHHHHHHHHHHHHTTCCSEEEESCCCTTCH-------HHHHHHH---TTCCEEEESC
T ss_pred CCCEEEEEcCCCChHHHHHHHHHHHhCCcCEEEEcCcccChH-------HHHHHHh---CCCCEEEECC
Confidence 346667777655322 222222 2336899998863221111 1222222 4688888763
No 320
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=49.90 E-value=23 Score=21.79 Aligned_cols=28 Identities=14% Similarity=0.094 Sum_probs=17.8
Q ss_pred CCcceeeeeeccCccc------eEEEEEEEeCCC
Q psy16649 1 SGENLCTLQIFRGCFQ------HNFHINYRDTAG 28 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~------~~~~l~i~Dt~g 28 (83)
||||++..++...... ..-..-++|+.+
T Consensus 133 sGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 133 TGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp CTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 7999999987654211 123455677766
No 321
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=49.86 E-value=33 Score=19.30 Aligned_cols=52 Identities=8% Similarity=-0.008 Sum_probs=36.2
Q ss_pred eEEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHh
Q psy16649 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEN 71 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~ 71 (83)
..+.+-|.|+++.-. ......+..+|.++++... +..+...+...++.+++.
T Consensus 110 ~~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~-~~~~~~~~~~~~~~l~~~ 161 (237)
T 1g3q_A 110 DKFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNP-EISCLTDTMKVGIVLKKA 161 (237)
T ss_dssp GGCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECS-CHHHHHHHHHHHHHHHHT
T ss_pred hcCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecC-CcccHHHHHHHHHHHHhC
Confidence 446778899987433 2344566789998888765 467777777777777654
No 322
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=49.78 E-value=21 Score=22.14 Aligned_cols=38 Identities=8% Similarity=0.068 Sum_probs=28.8
Q ss_pred cCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEE
Q psy16649 41 RGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKML 80 (83)
Q Consensus 41 ~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piil 80 (83)
.++|+++++--.-.+-+-+.+-.+++.+.+.. ++|++|
T Consensus 128 ~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~--~lPiil 165 (332)
T 2r8w_A 128 AGADALLLAPVSYTPLTQEEAYHHFAAVAGAT--ALPLAI 165 (332)
T ss_dssp HTCSEEEECCCCSSCCCHHHHHHHHHHHHHHC--SSCEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc--CCCEEE
Confidence 48999998865555556678888888887765 588876
No 323
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=49.73 E-value=1.7 Score=24.94 Aligned_cols=11 Identities=18% Similarity=0.359 Sum_probs=9.3
Q ss_pred CCcceeeeeec
Q psy16649 1 SGENLCTLQIF 11 (83)
Q Consensus 1 ~GKss~~~~~~ 11 (83)
||||+++..+.
T Consensus 41 sGKSTLl~~i~ 51 (251)
T 2ehv_A 41 TGKTTFAAQFI 51 (251)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 79999998776
No 324
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=49.65 E-value=25 Score=20.83 Aligned_cols=38 Identities=11% Similarity=-0.032 Sum_probs=25.4
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEe
Q psy16649 42 GAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLG 82 (83)
Q Consensus 42 ~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvg 82 (83)
+++++.+ +.....+...+++.++.+++.. .++|+++-|
T Consensus 174 ~~d~V~l--S~l~~~~~~~~~~~i~~l~~~~-~~~~v~vGG 211 (258)
T 2i2x_B 174 KPIMLTG--TALMTTTMYAFKEVNDMLLENG-IKIPFACGG 211 (258)
T ss_dssp CCSEEEE--ECCCTTTTTHHHHHHHHHHTTT-CCCCEEEES
T ss_pred CCCEEEE--EeeccCCHHHHHHHHHHHHhcC-CCCcEEEEC
Confidence 4555544 4444566677888888888765 458887766
No 325
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=49.50 E-value=21 Score=21.90 Aligned_cols=39 Identities=21% Similarity=0.147 Sum_probs=29.1
Q ss_pred cCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEE
Q psy16649 41 RGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLL 81 (83)
Q Consensus 41 ~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilv 81 (83)
.++|+++++--.-.+-+-+.+-.+++.+.+.. ++|++|-
T Consensus 118 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~--~lPiilY 156 (315)
T 3na8_A 118 LGAEAVMVLPISYWKLNEAEVFQHYRAVGEAI--GVPVMLY 156 (315)
T ss_dssp TTCSEEEECCCCSSCCCHHHHHHHHHHHHHHC--SSCEEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhC--CCcEEEE
Confidence 47999998855545556678888999988775 5888763
No 326
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=49.49 E-value=22 Score=21.44 Aligned_cols=38 Identities=18% Similarity=0.217 Sum_probs=28.7
Q ss_pred cCCcEEEEEEECCCh-hHHHHHHHHHHHHHHhcCCCceEEE
Q psy16649 41 RGAMGIMLVYDITNE-KSFDNIKNWIRNIEENASANVEKML 80 (83)
Q Consensus 41 ~~~~~~ilv~d~~~~-~s~~~~~~w~~~~~~~~~~~~piil 80 (83)
.++|+++++--.-.+ -+-+.+-.+++.+.+.. ++|+++
T Consensus 89 ~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~--~lPiil 127 (286)
T 2r91_A 89 RGAEAVASLPPYYFPRLSERQIAKYFRDLCSAV--SIPVFL 127 (286)
T ss_dssp TTCSEEEECCSCSSTTCCHHHHHHHHHHHHHHC--SSCEEE
T ss_pred cCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhc--CCCEEE
Confidence 489999988655555 56778888888887765 588876
No 327
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=49.30 E-value=19 Score=19.35 Aligned_cols=25 Identities=16% Similarity=0.360 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHHhcCCCceEEE
Q psy16649 56 KSFDNIKNWIRNIEENASANVEKML 80 (83)
Q Consensus 56 ~s~~~~~~w~~~~~~~~~~~~piil 80 (83)
.+|+.-..-...+++.-++.+|+|+
T Consensus 16 ~~~e~R~~e~~~ir~kyP~kIPVIv 40 (130)
T 2zjd_A 16 RTFEQRVEDVRLIREQHPTKIPVII 40 (130)
T ss_dssp SCHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred CCHHHHHHHHHHHHHhCCCceEEEE
Confidence 4565555566677777778899887
No 328
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=49.17 E-value=1.7 Score=24.04 Aligned_cols=12 Identities=8% Similarity=0.133 Sum_probs=9.8
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
|||||+...+..
T Consensus 13 aGKSTl~~~L~~ 24 (189)
T 2bdt_A 13 VGKSTTCKRLAA 24 (189)
T ss_dssp SSHHHHHHHHHH
T ss_pred CcHHHHHHHHhc
Confidence 799999888754
No 329
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=49.15 E-value=2.5 Score=24.28 Aligned_cols=12 Identities=17% Similarity=0.163 Sum_probs=9.0
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
|||||++.-+..
T Consensus 33 sGKSTLl~~l~G 44 (208)
T 3b85_A 33 SGKTYLAMAKAV 44 (208)
T ss_dssp SSTTHHHHHHHH
T ss_pred CCHHHHHHHHhc
Confidence 689998876643
No 330
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=49.07 E-value=1.7 Score=24.10 Aligned_cols=12 Identities=17% Similarity=0.371 Sum_probs=9.5
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
|||||+...+..
T Consensus 11 sGKsT~~~~L~~ 22 (205)
T 2jaq_A 11 AGKSTISAEISK 22 (205)
T ss_dssp SCHHHHHHHHHH
T ss_pred cCHHHHHHHHHH
Confidence 799998887654
No 331
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=49.00 E-value=1.9 Score=24.70 Aligned_cols=11 Identities=9% Similarity=0.335 Sum_probs=5.7
Q ss_pred CCcceeeeeec
Q psy16649 1 SGENLCTLQIF 11 (83)
Q Consensus 1 ~GKss~~~~~~ 11 (83)
|||||++..+.
T Consensus 38 sGKSTl~~~L~ 48 (231)
T 3lnc_A 38 CGKTTVANKLL 48 (231)
T ss_dssp ----CHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 79999988776
No 332
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=48.93 E-value=22 Score=21.46 Aligned_cols=38 Identities=5% Similarity=-0.017 Sum_probs=28.5
Q ss_pred cCCcEEEEEEECCCh-hHHHHHHHHHHHHHHhcCCCceEEE
Q psy16649 41 RGAMGIMLVYDITNE-KSFDNIKNWIRNIEENASANVEKML 80 (83)
Q Consensus 41 ~~~~~~ilv~d~~~~-~s~~~~~~w~~~~~~~~~~~~piil 80 (83)
.++|+++++--.-.+ -+-+.+-.+++.+.+.. ++|+++
T Consensus 90 ~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~--~lPiil 128 (288)
T 2nuw_A 90 MDILGVSSHSPYYFPRLPEKFLAKYYEEIARIS--SHSLYI 128 (288)
T ss_dssp SCCSEEEECCCCSSCSCCHHHHHHHHHHHHHHC--CSCEEE
T ss_pred cCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhc--CCCEEE
Confidence 489999988655555 56778888888887765 588876
No 333
>4e6n_A Metallophosphoesterase; RNA repair, RNA ligase, ligase-activating, protein binding; HET: AMP; 2.39A {Clostridium thermocellum} PDB: 4drf_A* 3ty9_A* 3ty8_A* 3ty5_A*
Probab=48.61 E-value=35 Score=22.14 Aligned_cols=28 Identities=18% Similarity=0.467 Sum_probs=23.0
Q ss_pred EEEECCChhHHHHHHHHHHHHHHhcCCC
Q psy16649 48 LVYDITNEKSFDNIKNWIRNIEENASAN 75 (83)
Q Consensus 48 lv~d~~~~~s~~~~~~w~~~~~~~~~~~ 75 (83)
++.|++|++|.+..-.|..++....+..
T Consensus 300 ~~VDl~d~~s~~~a~~WW~~lT~~GgEG 327 (427)
T 4e6n_A 300 ILVDVTDAESVDKGIKWWEDLTASGGEG 327 (427)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHTTCCE
T ss_pred EEeeCCCHHHHHHHHHHHHHHhcCCCce
Confidence 5679999999999999999988765443
No 334
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=48.59 E-value=1.8 Score=24.47 Aligned_cols=12 Identities=17% Similarity=0.456 Sum_probs=9.3
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
|||||++..+..
T Consensus 15 aGKSTLl~~L~~ 26 (198)
T 1lvg_A 15 AGKSTLLKKLFQ 26 (198)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHh
Confidence 699998887653
No 335
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=48.58 E-value=1.7 Score=24.30 Aligned_cols=12 Identities=25% Similarity=0.191 Sum_probs=8.5
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
|||||+...+..
T Consensus 29 sGKSTla~~L~~ 40 (202)
T 3t61_A 29 SGKSSVGEAIAE 40 (202)
T ss_dssp SCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 688888776543
No 336
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=48.54 E-value=48 Score=20.83 Aligned_cols=27 Identities=22% Similarity=0.236 Sum_probs=14.7
Q ss_pred ccCCcEEEEEEECCChhHHHHHHHHHH
Q psy16649 40 YRGAMGIMLVYDITNEKSFDNIKNWIR 66 (83)
Q Consensus 40 ~~~~~~~ilv~d~~~~~s~~~~~~w~~ 66 (83)
..++|.+++|.+..-.-+...+.+++-
T Consensus 128 ~anvD~v~iv~a~~P~~~~~~i~r~L~ 154 (358)
T 2rcn_A 128 AANIDQIVIVSAILPELSLNIIDRYLV 154 (358)
T ss_dssp EECCCEEEEEEESTTTCCHHHHHHHHH
T ss_pred HhcCCEEEEEEeCCCCCCHHHHHHHHH
Confidence 356777777766543233444455543
No 337
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=48.33 E-value=8.4 Score=23.41 Aligned_cols=13 Identities=15% Similarity=0.325 Sum_probs=10.1
Q ss_pred CCcceeeeeeccC
Q psy16649 1 SGENLCTLQIFRG 13 (83)
Q Consensus 1 ~GKss~~~~~~~~ 13 (83)
+|||+++..+...
T Consensus 57 ~GKTtla~~la~~ 69 (340)
T 1sxj_C 57 TGKTSTIVALARE 69 (340)
T ss_dssp SSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 6999998877654
No 338
>2xmo_A LMO2642 protein; phosphodiesterase, hydrolase; 1.70A {Listeria monocytogenes}
Probab=48.13 E-value=23 Score=22.27 Aligned_cols=40 Identities=18% Similarity=0.385 Sum_probs=23.9
Q ss_pred cCCcEEEEEEECCCh---hHHHHHHHHHHHHHHhcCCCceEEEE-eC
Q psy16649 41 RGAMGIMLVYDITNE---KSFDNIKNWIRNIEENASANVEKMLL-GN 83 (83)
Q Consensus 41 ~~~~~~ilv~d~~~~---~s~~~~~~w~~~~~~~~~~~~piilv-gN 83 (83)
.+.|.+|+.=|+.+. .+++.+..+++.+.. ..+|++.| ||
T Consensus 91 ~~~d~vi~~GDl~~~~~~~~~~~~~~~l~~l~~---~~~~~~~v~GN 134 (443)
T 2xmo_A 91 KKTDVLIISGDLTNNGEKTSHEELAKKLTQVEK---NGTQVFVVPGN 134 (443)
T ss_dssp HTCSEEEEESCCBSSCCHHHHHHHHHHHHHHHH---TTCEEEEECCT
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHh---CCCeEEEECCc
Confidence 467888888888764 334444444444432 35676555 87
No 339
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=48.07 E-value=2.3 Score=24.52 Aligned_cols=13 Identities=15% Similarity=0.038 Sum_probs=10.2
Q ss_pred CCcceeeeeeccC
Q psy16649 1 SGENLCTLQIFRG 13 (83)
Q Consensus 1 ~GKss~~~~~~~~ 13 (83)
|||||++..+...
T Consensus 31 sGKSTl~~~L~~~ 43 (230)
T 2vp4_A 31 SGKTTYLNHFEKY 43 (230)
T ss_dssp SCHHHHHHTTGGG
T ss_pred CCHHHHHHHHHhc
Confidence 7999998877654
No 340
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=47.99 E-value=1.7 Score=24.38 Aligned_cols=12 Identities=17% Similarity=0.099 Sum_probs=10.1
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
||||+++.++..
T Consensus 15 sGKTTl~~~L~~ 26 (169)
T 1xjc_A 15 SGKTTLMEKWVA 26 (169)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 799999988765
No 341
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=47.99 E-value=22 Score=18.42 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHhcCCCceEEE
Q psy16649 56 KSFDNIKNWIRNIEENASANVEKML 80 (83)
Q Consensus 56 ~s~~~~~~w~~~~~~~~~~~~piil 80 (83)
.+|+.-..-...++..-++.+|+++
T Consensus 8 ~~~e~R~~e~~~ir~k~p~~IPViv 32 (110)
T 2r2q_A 8 HPFEYRKKEGEKIRKKYPDRVPVIV 32 (110)
T ss_dssp SCHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred CCHHHHHHHHHHHHHhCCCceEEEE
Confidence 4555555556667777778899886
No 342
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=47.91 E-value=1.8 Score=23.55 Aligned_cols=12 Identities=8% Similarity=-0.006 Sum_probs=9.8
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
|||||+...+..
T Consensus 14 sGKST~a~~La~ 25 (178)
T 1qhx_A 14 AGKSGIVRCLQS 25 (178)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 799999887765
No 343
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}
Probab=47.62 E-value=41 Score=20.33 Aligned_cols=44 Identities=16% Similarity=0.206 Sum_probs=25.0
Q ss_pred hccCCcEEEEEEECCCh----------hHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 39 YYRGAMGIMLVYDITNE----------KSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 39 ~~~~~~~~ilv~d~~~~----------~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
-++++|.+++....... ....-++...+.+.+.+ ++..++++.|
T Consensus 64 a~~~aDvVIi~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~~~vi~~tN 117 (304)
T 2v6b_A 64 ELADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAA-PDAVLLVTSN 117 (304)
T ss_dssp GGTTCSEEEECC------------CHHHHHHHHHHHHHHHHHHC-SSSEEEECSS
T ss_pred HhCCCCEEEEcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHhC-CCeEEEEecC
Confidence 35688998887643322 22233455667777765 6776666665
No 344
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=47.56 E-value=1.8 Score=24.26 Aligned_cols=12 Identities=17% Similarity=0.177 Sum_probs=8.7
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
|||||+...+..
T Consensus 40 sGKSTl~~~L~~ 51 (200)
T 4eun_A 40 SGKTTIAHGVAD 51 (200)
T ss_dssp SCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 688888777643
No 345
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*
Probab=47.42 E-value=31 Score=20.98 Aligned_cols=45 Identities=20% Similarity=0.294 Sum_probs=27.5
Q ss_pred hhccCCcEEEEEEECCCh------hHHH----HHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 38 AYYRGAMGIMLVYDITNE------KSFD----NIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 38 ~~~~~~~~~ilv~d~~~~------~s~~----~~~~w~~~~~~~~~~~~piilvgN 83 (83)
.-++++|.++++-....+ +.+. -++...+.+.+.+ ++..+++++|
T Consensus 65 ~a~~~aDiVViaag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~iivvsN 119 (294)
T 1oju_A 65 SLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENA-PESKILVVTN 119 (294)
T ss_dssp GGGTTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTS-TTCEEEECSS
T ss_pred HHhCCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeCC
Confidence 345688999988655432 1121 1244555666664 7888888877
No 346
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=47.31 E-value=1.9 Score=24.03 Aligned_cols=13 Identities=23% Similarity=0.427 Sum_probs=9.5
Q ss_pred CCcceeeeeeccC
Q psy16649 1 SGENLCTLQIFRG 13 (83)
Q Consensus 1 ~GKss~~~~~~~~ 13 (83)
|||||++..+...
T Consensus 17 sGKSTl~~~L~~~ 29 (207)
T 2j41_A 17 VGKGTVRKRIFED 29 (207)
T ss_dssp SCHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHh
Confidence 7899988776543
No 347
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=47.29 E-value=35 Score=19.70 Aligned_cols=56 Identities=23% Similarity=0.417 Sum_probs=28.1
Q ss_pred eEEEEEEEeCCCchh-hhcchhh-hccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEe
Q psy16649 17 HNFHINYRDTAGQER-FRTITTA-YYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLG 82 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~-~~~~~~~-~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvg 82 (83)
..+.+.+.++.+... ....... .-++.|++|++-.-.+.+ .++.+.+ .++|+++++
T Consensus 42 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~-------~~~~l~~---~~iPvV~~~ 99 (292)
T 3k4h_A 42 EGYALYMSTGETEEEIFNGVVKMVQGRQIGGIILLYSRENDR-------IIQYLHE---QNFPFVLIG 99 (292)
T ss_dssp TTCEEEECCCCSHHHHHHHHHHHHHTTCCCEEEESCCBTTCH-------HHHHHHH---TTCCEEEES
T ss_pred cCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCChH-------HHHHHHH---CCCCEEEEC
Confidence 345666776655432 2222222 235789988753221211 2222322 468888775
No 348
>2pd2_A Hypothetical protein ST0148; structural genomics, NPPSFA, national project on protein STR and functional analyses; 2.06A {Sulfolobus tokodaii}
Probab=47.26 E-value=26 Score=17.43 Aligned_cols=11 Identities=9% Similarity=0.090 Sum_probs=4.6
Q ss_pred EECCChhHHHH
Q psy16649 50 YDITNEKSFDN 60 (83)
Q Consensus 50 ~d~~~~~s~~~ 60 (83)
|++++++.+..
T Consensus 5 ~~v~d~~~~~~ 15 (108)
T 2pd2_A 5 VQIKDFDKVPQ 15 (108)
T ss_dssp EEECCGGGHHH
T ss_pred EEeCChHHHHH
Confidence 33344444433
No 349
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=46.97 E-value=2.5 Score=24.85 Aligned_cols=14 Identities=14% Similarity=0.033 Sum_probs=10.7
Q ss_pred CCcceeeeeeccCc
Q psy16649 1 SGENLCTLQIFRGC 14 (83)
Q Consensus 1 ~GKss~~~~~~~~~ 14 (83)
|||||++.-+..-.
T Consensus 35 sGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 35 AGKSVFLELIAGIV 48 (240)
T ss_dssp SSHHHHHHHHHTSS
T ss_pred CCHHHHHHHHhCCC
Confidence 79999998765543
No 350
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=46.92 E-value=2.5 Score=24.72 Aligned_cols=13 Identities=8% Similarity=0.130 Sum_probs=9.7
Q ss_pred CCcceeeeeeccC
Q psy16649 1 SGENLCTLQIFRG 13 (83)
Q Consensus 1 ~GKss~~~~~~~~ 13 (83)
|||||++.-+..-
T Consensus 42 sGKSTLl~~l~Gl 54 (237)
T 2cbz_A 42 CGKSSLLSALLAE 54 (237)
T ss_dssp SSHHHHHHHHTTC
T ss_pred CCHHHHHHHHhcC
Confidence 7999998776543
No 351
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=46.89 E-value=1.9 Score=23.61 Aligned_cols=12 Identities=8% Similarity=0.158 Sum_probs=9.4
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
|||||+...+..
T Consensus 12 sGKsT~~~~L~~ 23 (194)
T 1nks_A 12 VGKSTVLAKVKE 23 (194)
T ss_dssp SCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 789988887755
No 352
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=46.70 E-value=1.9 Score=23.75 Aligned_cols=13 Identities=15% Similarity=0.038 Sum_probs=10.6
Q ss_pred CCcceeeeeeccC
Q psy16649 1 SGENLCTLQIFRG 13 (83)
Q Consensus 1 ~GKss~~~~~~~~ 13 (83)
|||||+...+...
T Consensus 11 sGKsT~~~~L~~~ 23 (197)
T 2z0h_A 11 SGKSTQIQLLAQY 23 (197)
T ss_dssp SSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 7999999887654
No 353
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=46.47 E-value=2.6 Score=24.96 Aligned_cols=14 Identities=21% Similarity=-0.066 Sum_probs=10.6
Q ss_pred CCcceeeeeeccCc
Q psy16649 1 SGENLCTLQIFRGC 14 (83)
Q Consensus 1 ~GKss~~~~~~~~~ 14 (83)
|||||++.-+..-.
T Consensus 44 sGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 44 SGKSTLINVITGFL 57 (257)
T ss_dssp SSHHHHHHHHTTSS
T ss_pred CCHHHHHHHHhCCC
Confidence 79999998765443
No 354
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=46.43 E-value=2.9 Score=22.86 Aligned_cols=10 Identities=30% Similarity=0.185 Sum_probs=7.1
Q ss_pred CCcceeeeee
Q psy16649 1 SGENLCTLQI 10 (83)
Q Consensus 1 ~GKss~~~~~ 10 (83)
||||+++..+
T Consensus 37 sGKStll~ai 46 (182)
T 3kta_A 37 SGKSNIGDAI 46 (182)
T ss_dssp SSHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 6888876554
No 355
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=46.43 E-value=2 Score=24.97 Aligned_cols=12 Identities=25% Similarity=0.385 Sum_probs=9.4
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
|||||++..+..
T Consensus 36 sGKSTl~k~L~~ 47 (245)
T 2jeo_A 36 SGKSTVCEKIME 47 (245)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 799999887654
No 356
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=46.36 E-value=2.6 Score=24.50 Aligned_cols=14 Identities=14% Similarity=0.207 Sum_probs=10.3
Q ss_pred CCcceeeeeeccCc
Q psy16649 1 SGENLCTLQIFRGC 14 (83)
Q Consensus 1 ~GKss~~~~~~~~~ 14 (83)
|||||++.-+..-.
T Consensus 45 sGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 45 AGKTSLLMMIMGEL 58 (229)
T ss_dssp SSHHHHHHHHTTSS
T ss_pred CCHHHHHHHHhCCC
Confidence 79999988765443
No 357
>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}
Probab=46.24 E-value=48 Score=20.15 Aligned_cols=44 Identities=16% Similarity=0.187 Sum_probs=27.5
Q ss_pred hccCCcEEEEEEECCCh------hH-HHH---HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 39 YYRGAMGIMLVYDITNE------KS-FDN---IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 39 ~~~~~~~~ilv~d~~~~------~s-~~~---~~~w~~~~~~~~~~~~piilvgN 83 (83)
-+++||.+|+....... +. +.+ ++...+++.+.+ ++.-++++.|
T Consensus 64 a~~~aD~Vi~~ag~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tN 117 (308)
T 2d4a_B 64 DMRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYA-KDAIVVITTN 117 (308)
T ss_dssp GGTTCSEEEECCSCCCCSSCCTHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCS
T ss_pred HhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCC
Confidence 36789999887544331 11 222 455677777776 7777777776
No 358
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=45.87 E-value=2.7 Score=24.65 Aligned_cols=12 Identities=17% Similarity=0.124 Sum_probs=9.5
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
|||||++.-+..
T Consensus 39 sGKSTLl~~l~G 50 (243)
T 1mv5_A 39 GGKSTIFSLLER 50 (243)
T ss_dssp SSHHHHHHHHTT
T ss_pred CCHHHHHHHHhc
Confidence 799999887654
No 359
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=45.84 E-value=2.7 Score=25.01 Aligned_cols=14 Identities=21% Similarity=-0.159 Sum_probs=10.7
Q ss_pred CCcceeeeeeccCc
Q psy16649 1 SGENLCTLQIFRGC 14 (83)
Q Consensus 1 ~GKss~~~~~~~~~ 14 (83)
|||||++.-+..-.
T Consensus 43 sGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 43 SGKSTFLRCINFLE 56 (262)
T ss_dssp SSHHHHHHHHTTSS
T ss_pred CCHHHHHHHHhcCC
Confidence 79999998765443
No 360
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=45.84 E-value=21 Score=18.41 Aligned_cols=43 Identities=12% Similarity=0.204 Sum_probs=21.1
Q ss_pred hccCCcEEEEEEECCChhHHH--HHHHHHHHHHHhcCCCceEEEEe
Q psy16649 39 YYRGAMGIMLVYDITNEKSFD--NIKNWIRNIEENASANVEKMLLG 82 (83)
Q Consensus 39 ~~~~~~~~ilv~d~~~~~s~~--~~~~w~~~~~~~~~~~~piilvg 82 (83)
.+..+|.+++....-...-.. .+..+++.+... -.+.++.++|
T Consensus 42 ~l~~~d~iiig~pty~~g~~p~~~~~~fl~~l~~~-l~~k~~~~f~ 86 (138)
T 5nul_A 42 ELLNEDILILGCSAMTDEVLEESEFEPFIEEISTK-ISGKKVALFG 86 (138)
T ss_dssp HHTTCSEEEEEECCBTTTBCCTTTHHHHHHHHGGG-CTTCEEEEEE
T ss_pred HHhhCCEEEEEcCccCCCCCChHHHHHHHHHHHhh-cCCCEEEEEE
Confidence 345667777776554322121 345555555432 2345555544
No 361
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=45.78 E-value=24 Score=18.65 Aligned_cols=25 Identities=8% Similarity=0.190 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHhcCCCceEEE
Q psy16649 56 KSFDNIKNWIRNIEENASANVEKML 80 (83)
Q Consensus 56 ~s~~~~~~w~~~~~~~~~~~~piil 80 (83)
.+|+.=..-...+++.-++.+|+|+
T Consensus 12 ~~~e~R~~e~~~ir~kyP~rIPVIv 36 (119)
T 3h9d_A 12 HTFESRQSDAAKVRERHPDRLPIIC 36 (119)
T ss_dssp SCHHHHHHHHHHHHHHSTTEEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3455555556667776678899886
No 362
>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*
Probab=45.75 E-value=44 Score=20.49 Aligned_cols=45 Identities=13% Similarity=0.285 Sum_probs=27.7
Q ss_pred hhccCCcEEEEEEECCCh------hHHHH----HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 38 AYYRGAMGIMLVYDITNE------KSFDN----IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 38 ~~~~~~~~~ilv~d~~~~------~s~~~----~~~w~~~~~~~~~~~~piilvgN 83 (83)
.-++++|.+|+.-....+ +-|+. ++...+.+.+++ ++..+++++|
T Consensus 65 ~~~~~aDivii~ag~~rkpG~~R~dll~~N~~I~~~i~~~i~~~~-p~a~vlvvtN 119 (312)
T 3hhp_A 65 PALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTC-PKACIGIITN 119 (312)
T ss_dssp HHHTTCSEEEECCSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTSEEEECSS
T ss_pred HHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEecC
Confidence 456789999987654432 22221 244566666665 6777888777
No 363
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=45.74 E-value=2.1 Score=24.57 Aligned_cols=12 Identities=8% Similarity=0.232 Sum_probs=8.8
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
|||||++..+..
T Consensus 34 sGKSTLl~~L~g 45 (218)
T 1z6g_A 34 VGKGTLIKKLLN 45 (218)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHh
Confidence 688888876543
No 364
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=45.55 E-value=2.1 Score=25.59 Aligned_cols=11 Identities=18% Similarity=0.323 Sum_probs=8.0
Q ss_pred CCcceeeeeec
Q psy16649 1 SGENLCTLQIF 11 (83)
Q Consensus 1 ~GKss~~~~~~ 11 (83)
|||||++..+.
T Consensus 13 aGKSTLln~L~ 23 (270)
T 3sop_A 13 LGKSTLVNTLF 23 (270)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHh
Confidence 68888877654
No 365
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=45.47 E-value=2.4 Score=25.90 Aligned_cols=13 Identities=15% Similarity=0.253 Sum_probs=10.4
Q ss_pred CCcceeeeeeccC
Q psy16649 1 SGENLCTLQIFRG 13 (83)
Q Consensus 1 ~GKss~~~~~~~~ 13 (83)
|||||++..+...
T Consensus 15 aGKTTll~~l~~~ 27 (318)
T 1nij_A 15 AGKTTLLRHILNE 27 (318)
T ss_dssp SSCHHHHHHHHHS
T ss_pred CCHHHHHHHHHhh
Confidence 7999999887743
No 366
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=45.40 E-value=25 Score=18.83 Aligned_cols=25 Identities=20% Similarity=0.209 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHhcCCCceEEE
Q psy16649 56 KSFDNIKNWIRNIEENASANVEKML 80 (83)
Q Consensus 56 ~s~~~~~~w~~~~~~~~~~~~piil 80 (83)
.||+.=..-...+++.-++.+|+|+
T Consensus 17 ~s~e~R~~e~~~ir~kyP~rIPVIv 41 (125)
T 3m95_A 17 HSFEKRKAEGEKIRRKYPDRVPVIV 41 (125)
T ss_dssp SCHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4566555566677777778899886
No 367
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=45.37 E-value=2.8 Score=24.58 Aligned_cols=14 Identities=14% Similarity=0.010 Sum_probs=10.7
Q ss_pred CCcceeeeeeccCc
Q psy16649 1 SGENLCTLQIFRGC 14 (83)
Q Consensus 1 ~GKss~~~~~~~~~ 14 (83)
|||||++.-+..-.
T Consensus 43 sGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 43 AGKTTTLSAIAGLV 56 (240)
T ss_dssp SSHHHHHHHHTTSS
T ss_pred CCHHHHHHHHhCCC
Confidence 79999988765543
No 368
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=45.26 E-value=2.1 Score=23.44 Aligned_cols=12 Identities=8% Similarity=0.111 Sum_probs=9.0
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
|||||+...+..
T Consensus 14 sGKsT~~~~L~~ 25 (192)
T 1kht_A 14 VGSTTSSQLAMD 25 (192)
T ss_dssp SCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 688888777654
No 369
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=45.07 E-value=15 Score=20.79 Aligned_cols=46 Identities=9% Similarity=0.169 Sum_probs=27.4
Q ss_pred hhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEe
Q psy16649 37 TAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLG 82 (83)
Q Consensus 37 ~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvg 82 (83)
..-+..||++|++.-.-+-.---.++.|++.+....-.+-|+.+++
T Consensus 80 ~~~i~~AD~ivi~sP~Y~~~~~~~lK~~iD~~~~~~l~gK~~~~v~ 125 (191)
T 3k1y_A 80 TSALSASDGLVVATPVFKASYTGLFKMFFDILDTDALTGMPTIIAA 125 (191)
T ss_dssp HHHHHHCSEEEEEEECBTTBSCHHHHHHHHHSCTTTTTTCEEEEEE
T ss_pred HHHHHHCCEEEEEcCccCCcCcHHHHHHHHHhhhhhcCCCEEEEEE
Confidence 3355679999998777665544556667666643211344555554
No 370
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=45.00 E-value=2.1 Score=23.49 Aligned_cols=12 Identities=8% Similarity=0.196 Sum_probs=9.0
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
|||||+...+..
T Consensus 16 sGKST~~~~L~~ 27 (193)
T 2rhm_A 16 TGKTTLSQALAT 27 (193)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 688888877654
No 371
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=44.99 E-value=2.8 Score=24.26 Aligned_cols=14 Identities=14% Similarity=-0.097 Sum_probs=10.5
Q ss_pred CCcceeeeeeccCc
Q psy16649 1 SGENLCTLQIFRGC 14 (83)
Q Consensus 1 ~GKss~~~~~~~~~ 14 (83)
|||||++.-+..-.
T Consensus 46 sGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 46 IGKTTLLKTISTYL 59 (214)
T ss_dssp SSHHHHHHHHTTSS
T ss_pred CCHHHHHHHHhcCC
Confidence 79999988765443
No 372
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=44.96 E-value=2.8 Score=24.70 Aligned_cols=16 Identities=31% Similarity=0.171 Sum_probs=11.4
Q ss_pred CCcceeeeeeccCccc
Q psy16649 1 SGENLCTLQIFRGCFQ 16 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~ 16 (83)
|||||++.-+..-..+
T Consensus 46 sGKSTLl~~l~Gl~~p 61 (247)
T 2ff7_A 46 SGKSTLTKLIQRFYIP 61 (247)
T ss_dssp SSHHHHHHHHTTSSCC
T ss_pred CCHHHHHHHHhcCCCC
Confidence 7999998876554433
No 373
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=44.61 E-value=2.2 Score=24.01 Aligned_cols=12 Identities=17% Similarity=0.553 Sum_probs=9.5
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
||||+++..+..
T Consensus 34 sGKTtl~~~l~~ 45 (235)
T 2w0m_A 34 TGKTIFSLHFIA 45 (235)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 689998888763
No 374
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=44.36 E-value=2.9 Score=24.97 Aligned_cols=14 Identities=14% Similarity=-0.164 Sum_probs=10.6
Q ss_pred CCcceeeeeeccCc
Q psy16649 1 SGENLCTLQIFRGC 14 (83)
Q Consensus 1 ~GKss~~~~~~~~~ 14 (83)
|||||++.-+..-.
T Consensus 61 sGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 61 SGKSTFLRCLNLLE 74 (263)
T ss_dssp SSHHHHHHHHTTSS
T ss_pred CcHHHHHHHHHcCC
Confidence 79999988765443
No 375
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}
Probab=44.31 E-value=47 Score=20.38 Aligned_cols=45 Identities=18% Similarity=0.226 Sum_probs=27.9
Q ss_pred hhccCCcEEEEEEECCCh------hHHHH----HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 38 AYYRGAMGIMLVYDITNE------KSFDN----IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 38 ~~~~~~~~~ilv~d~~~~------~s~~~----~~~w~~~~~~~~~~~~piilvgN 83 (83)
.-++++|.+|+.-....+ +-+.. ++...+.+.+.+ ++.-+++++|
T Consensus 74 ~a~~~aDvVIiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vlvvsN 128 (315)
T 3tl2_A 74 ADTADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHS-PNAIIVVLTN 128 (315)
T ss_dssp GGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCS
T ss_pred HHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEECCC
Confidence 346789999998644332 22221 345666666665 6777888876
No 376
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=44.28 E-value=1.4 Score=24.72 Aligned_cols=12 Identities=8% Similarity=0.116 Sum_probs=9.3
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
|||||++..+..
T Consensus 11 sGKsTl~~~L~~ 22 (214)
T 1gtv_A 11 AGKRTLVEKLSG 22 (214)
T ss_dssp EEHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 699999877643
No 377
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A
Probab=44.11 E-value=51 Score=19.90 Aligned_cols=43 Identities=9% Similarity=0.107 Sum_probs=27.1
Q ss_pred ccCCcEEEEEEECCC----------hhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 40 YRGAMGIMLVYDITN----------EKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 40 ~~~~~~~ilv~d~~~----------~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
++++|.++++..... .+...-.+...+++.+.. ++..++++.|
T Consensus 70 ~~~aDiVi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~-~~~iii~~sN 122 (317)
T 2ewd_A 70 ISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYC-PNAFVICITN 122 (317)
T ss_dssp GTTCSEEEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECCS
T ss_pred hCCCCEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHC-CCcEEEEeCC
Confidence 567888888763322 233334566777777776 5777777665
No 378
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=44.06 E-value=3 Score=24.59 Aligned_cols=12 Identities=8% Similarity=0.041 Sum_probs=10.0
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
|||||++.-+..
T Consensus 40 sGKSTLlk~l~G 51 (250)
T 2d2e_A 40 AGKSTLGKILAG 51 (250)
T ss_dssp SSHHHHHHHHHT
T ss_pred CCHHHHHHHHhC
Confidence 799999887665
No 379
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=43.96 E-value=2.3 Score=23.86 Aligned_cols=12 Identities=17% Similarity=0.230 Sum_probs=8.8
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
|||||+...+..
T Consensus 36 sGKSTl~~~La~ 47 (200)
T 3uie_A 36 SGKSTLACALNQ 47 (200)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 789998776543
No 380
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=43.91 E-value=2.3 Score=23.75 Aligned_cols=12 Identities=8% Similarity=0.105 Sum_probs=9.5
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
|||||+...+..
T Consensus 12 sGKSTl~~~L~~ 23 (204)
T 2if2_A 12 CGKSTVAQMFRE 23 (204)
T ss_dssp SSHHHHHHHHHH
T ss_pred cCHHHHHHHHHH
Confidence 799998887754
No 381
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=43.80 E-value=3 Score=25.09 Aligned_cols=14 Identities=7% Similarity=-0.171 Sum_probs=10.5
Q ss_pred CCcceeeeeeccCc
Q psy16649 1 SGENLCTLQIFRGC 14 (83)
Q Consensus 1 ~GKss~~~~~~~~~ 14 (83)
|||||++.-+..-.
T Consensus 45 sGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 45 VGKSTLFQNFNGIL 58 (275)
T ss_dssp SSHHHHHHHHTTSS
T ss_pred CCHHHHHHHHHcCC
Confidence 79999988765433
No 382
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=43.74 E-value=2.3 Score=23.15 Aligned_cols=11 Identities=18% Similarity=0.326 Sum_probs=7.1
Q ss_pred CCcceeeeeec
Q psy16649 1 SGENLCTLQIF 11 (83)
Q Consensus 1 ~GKss~~~~~~ 11 (83)
|||||+...+.
T Consensus 19 sGKSTl~~~l~ 29 (175)
T 1knq_A 19 SGKSAVASEVA 29 (175)
T ss_dssp SCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 67777766543
No 383
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=43.73 E-value=2.3 Score=24.63 Aligned_cols=13 Identities=8% Similarity=0.263 Sum_probs=9.5
Q ss_pred CCcceeeeeeccC
Q psy16649 1 SGENLCTLQIFRG 13 (83)
Q Consensus 1 ~GKss~~~~~~~~ 13 (83)
|||||++..+...
T Consensus 27 sGKSTLlk~L~g~ 39 (219)
T 1s96_A 27 AGKSSLIQALLKT 39 (219)
T ss_dssp SCHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcc
Confidence 6899888876543
No 384
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=43.70 E-value=2.4 Score=24.63 Aligned_cols=11 Identities=27% Similarity=0.311 Sum_probs=8.3
Q ss_pred CCcceeeeeec
Q psy16649 1 SGENLCTLQIF 11 (83)
Q Consensus 1 ~GKss~~~~~~ 11 (83)
|||||++..+.
T Consensus 38 sGKSTl~k~La 48 (246)
T 2bbw_A 38 SGKGTVCQRIA 48 (246)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 68888877765
No 385
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=43.66 E-value=35 Score=18.68 Aligned_cols=33 Identities=3% Similarity=-0.014 Sum_probs=21.4
Q ss_pred hhhccCCcEEEEEEECCChhHHHHHHHHHHHHH
Q psy16649 37 TAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIE 69 (83)
Q Consensus 37 ~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~ 69 (83)
..-+..+|++|+..-+-.-.--..++.|++.+.
T Consensus 63 ~~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~ 95 (198)
T 3b6i_A 63 PQELADYDAIIFGTPTRFGNMSGQMRTFLDQTG 95 (198)
T ss_dssp GGGGGGCSEEEEEEEEETTEECHHHHHHHTTCH
T ss_pred HHHHHHCCEEEEEeChhcCCchHHHHHHHHHhh
Confidence 345678999999876655443445666666554
No 386
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=43.64 E-value=3.1 Score=24.76 Aligned_cols=14 Identities=14% Similarity=-0.052 Sum_probs=10.9
Q ss_pred CCcceeeeeeccCc
Q psy16649 1 SGENLCTLQIFRGC 14 (83)
Q Consensus 1 ~GKss~~~~~~~~~ 14 (83)
|||||++.-+..-.
T Consensus 52 sGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 52 AGKTTTLRIISTLI 65 (256)
T ss_dssp SSHHHHHHHHTTSS
T ss_pred CCHHHHHHHHhcCC
Confidence 79999998876543
No 387
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=43.58 E-value=2.3 Score=23.92 Aligned_cols=12 Identities=8% Similarity=0.227 Sum_probs=9.4
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
|||||+...+..
T Consensus 23 sGKsTl~~~L~~ 34 (204)
T 2qor_A 23 VGKGTLIKKVLS 34 (204)
T ss_dssp SCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 799998887654
No 388
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=43.48 E-value=48 Score=20.51 Aligned_cols=50 Identities=14% Similarity=-0.031 Sum_probs=31.5
Q ss_pred EEEEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHH
Q psy16649 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE 70 (83)
Q Consensus 18 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~ 70 (83)
.+.+-|.|++..- .......+..+|.++++... ++.+...+....+.++.
T Consensus 259 ~yD~VIID~p~~~--~~~~~~~l~~aD~vivv~~~-~~~s~~~l~~~~~~l~~ 308 (373)
T 3fkq_A 259 NYDEIIVDLPFSL--EIEKLKLLSKAWRIIVVNDG-SQLSNYKFMRAYESVVL 308 (373)
T ss_dssp CCSEEEEECCCCC--CHHHHHHHTTCSEEEEEECC-CHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCC--CHHHHHHHHHCCEEEEEecC-CchHHHHHHHHHHHHHH
Confidence 4678899997422 22344567789999998654 45565556555555544
No 389
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=43.44 E-value=3.1 Score=24.88 Aligned_cols=12 Identities=8% Similarity=0.044 Sum_probs=9.3
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
|||||++.-+..
T Consensus 48 sGKSTLl~~l~G 59 (266)
T 4g1u_C 48 AGKSTLLRLLTG 59 (266)
T ss_dssp SCHHHHHHHHTS
T ss_pred CcHHHHHHHHhc
Confidence 799999877654
No 390
>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} SCOP: c.23.5.4 PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A*
Probab=43.41 E-value=6.4 Score=21.54 Aligned_cols=45 Identities=16% Similarity=0.035 Sum_probs=26.5
Q ss_pred hhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEe
Q psy16649 38 AYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLG 82 (83)
Q Consensus 38 ~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvg 82 (83)
.-+..+|++|+..-.-+-.--..++.|++.+....-.+-|+.+++
T Consensus 59 ~~i~~aD~ii~~tP~y~~~~p~~lk~~lD~l~~~~~~gK~~~~~~ 103 (174)
T 3gfs_A 59 QRVTKADAIVLLSPEYHSGMSGALKNALDFLSSEQFKYKPVALLA 103 (174)
T ss_dssp HHHHHCSSEEEEEECSSSSCCHHHHHHHHTCCHHHHTTCEEEEEE
T ss_pred HHHHHCCEEEEEcCCcCCCCCHHHHHHHHHhCHhhhCCCcEEEEE
Confidence 356788999999877765555556666655532111234555443
No 391
>3u5c_H RP30, RP40, 40S ribosomal protein S7-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_H
Probab=43.25 E-value=47 Score=19.17 Aligned_cols=38 Identities=11% Similarity=0.311 Sum_probs=26.8
Q ss_pred cEEEEEEECCChhHHHHHH-HHHHHHHHhcCCCceEEEEe
Q psy16649 44 MGIMLVYDITNEKSFDNIK-NWIRNIEENASANVEKMLLG 82 (83)
Q Consensus 44 ~~~ilv~d~~~~~s~~~~~-~w~~~~~~~~~~~~piilvg 82 (83)
.++++..-+....+|+.++ .+..++.... ++-.++++|
T Consensus 56 KAivIfVP~p~lk~f~KIq~rLvrELEKKf-sgkhVvfiA 94 (190)
T 3u5c_H 56 KALAIFVPVPSLAGFHKVQTKLTRELEKKF-QDRHVIFLA 94 (190)
T ss_dssp EEEEEEECSSSHHHHHHHTHHHHHHHHHTT-CSEEEEEEE
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHHHHhcc-CCCEEEEEe
Confidence 4566666777889999997 4677776665 456666665
No 392
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=43.14 E-value=2.3 Score=23.26 Aligned_cols=11 Identities=9% Similarity=0.187 Sum_probs=8.4
Q ss_pred CCcceeeeeec
Q psy16649 1 SGENLCTLQIF 11 (83)
Q Consensus 1 ~GKss~~~~~~ 11 (83)
|||||+...+.
T Consensus 15 sGKST~~~~La 25 (186)
T 3cm0_A 15 AGKGTQASRLA 25 (186)
T ss_dssp SCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 68888877765
No 393
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=43.12 E-value=3.1 Score=24.79 Aligned_cols=13 Identities=15% Similarity=0.179 Sum_probs=10.3
Q ss_pred CCcceeeeeeccC
Q psy16649 1 SGENLCTLQIFRG 13 (83)
Q Consensus 1 ~GKss~~~~~~~~ 13 (83)
|||||++.-+..-
T Consensus 57 sGKSTLlk~l~Gl 69 (267)
T 2zu0_C 57 SGKSTLSATLAGR 69 (267)
T ss_dssp SSHHHHHHHHHTC
T ss_pred CCHHHHHHHHhCC
Confidence 7999999876553
No 394
>2bog_X Endoglucanase E-2; hydrolase, thermobifida fusca, TIM A/B fold, glycoside hydrolase family 6; HET: MGL SGC BGC; 1.04A {Thermomonospora fusca} PDB: 2bof_X* 2boe_X* 2bod_X* 1tml_A* 3ru8_X 3rpt_X
Probab=43.03 E-value=28 Score=21.42 Aligned_cols=37 Identities=16% Similarity=0.401 Sum_probs=24.2
Q ss_pred cEEEEEEECCChh----------HHHHHHHHHHHHHHhcCCCceEEEE
Q psy16649 44 MGIMLVYDITNEK----------SFDNIKNWIRNIEENASANVEKMLL 81 (83)
Q Consensus 44 ~~~ilv~d~~~~~----------s~~~~~~w~~~~~~~~~~~~piilv 81 (83)
-.++++|++-+++ +.++-+.|+..+....+ +.|+++|
T Consensus 67 ~pvlVvY~lP~RDCa~aS~Gg~~~~~~Yk~~Id~ia~~i~-~~~~vvI 113 (286)
T 2bog_X 67 IPILVVSNAPGRDCGNHSSGGAPSHSAYRSWIDEFAAGLK-NRPAYII 113 (286)
T ss_dssp BCEEEECCCSCSCCC------CSSHHHHHHHHHHHHHTTT-TCCCEEE
T ss_pred ceEEEEeCCCCCCcccccCCCCCCHHHHHHHHHHHHHHhC-CCceEEE
Confidence 3467888887763 45556789999988663 4454443
No 395
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=43.02 E-value=9.1 Score=23.92 Aligned_cols=28 Identities=21% Similarity=0.272 Sum_probs=17.2
Q ss_pred CCcceeeeeeccCccceEEEEEEEeCCC
Q psy16649 1 SGENLCTLQIFRGCFQHNFHINYRDTAG 28 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~~~~~l~i~Dt~g 28 (83)
+|||++..++...........-+.|+..
T Consensus 74 sGKTtLal~la~~~~~~g~~vlyid~E~ 101 (356)
T 1u94_A 74 SGKTTLTLQVIAAAQREGKTCAFIDAEH 101 (356)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 6999999887754222122445677744
No 396
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=42.97 E-value=53 Score=19.68 Aligned_cols=57 Identities=7% Similarity=0.099 Sum_probs=30.2
Q ss_pred EEEEEEEeCCCch-hhhcchhhhcc---CCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 18 NFHINYRDTAGQE-RFRTITTAYYR---GAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 18 ~~~l~i~Dt~g~~-~~~~~~~~~~~---~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
.+.+.+.++.+.. ........... ++|++|++- . ... ....++.+ ....+|++++++
T Consensus 34 g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~--~-~~~---~~~~~~~~---~~~giPvV~~~~ 94 (350)
T 3h75_A 34 GLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVN--E-QYV---APQILRLS---QGSGIKLFIVNS 94 (350)
T ss_dssp TCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEEC--C-SSH---HHHHHHHH---TTSCCEEEEEES
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeC--c-hhh---HHHHHHHH---HhCCCcEEEEcC
Confidence 3566777766543 22333344443 899999863 2 111 12222222 335799988764
No 397
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=42.81 E-value=3.2 Score=24.57 Aligned_cols=13 Identities=8% Similarity=0.046 Sum_probs=10.0
Q ss_pred CCcceeeeeeccC
Q psy16649 1 SGENLCTLQIFRG 13 (83)
Q Consensus 1 ~GKss~~~~~~~~ 13 (83)
|||||++.-+..-
T Consensus 37 sGKSTLlk~l~Gl 49 (249)
T 2qi9_C 37 AGKSTLLARMAGM 49 (249)
T ss_dssp SSHHHHHHHHTTS
T ss_pred CcHHHHHHHHhCC
Confidence 7999998876543
No 398
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=42.70 E-value=3.2 Score=24.70 Aligned_cols=14 Identities=14% Similarity=-0.054 Sum_probs=10.5
Q ss_pred CCcceeeeeeccCc
Q psy16649 1 SGENLCTLQIFRGC 14 (83)
Q Consensus 1 ~GKss~~~~~~~~~ 14 (83)
|||||++.-+..-.
T Consensus 44 sGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 44 SGKSTLLQIVAGLI 57 (266)
T ss_dssp SSHHHHHHHHTTSS
T ss_pred CcHHHHHHHHhCCC
Confidence 79999988765443
No 399
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=42.67 E-value=3.2 Score=24.64 Aligned_cols=12 Identities=25% Similarity=0.501 Sum_probs=9.5
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
|||||++.-+..
T Consensus 57 sGKSTLl~~l~G 68 (260)
T 2ghi_A 57 SGKSTIAKLLYR 68 (260)
T ss_dssp SSHHHHHHHHTT
T ss_pred CCHHHHHHHHhc
Confidence 799999887654
No 400
>2pcq_A Putative dihydrodipicolinate synthase; lyase, lysine biosynthesis, dihydrodipicoliante, S genomics, NPPSFA; 2.10A {Thermus thermophilus}
Probab=42.66 E-value=19 Score=21.71 Aligned_cols=36 Identities=14% Similarity=0.155 Sum_probs=26.3
Q ss_pred cCCcEEEEEEECCChh-HHHHHHHHHHHHHHhcCCCceEEE
Q psy16649 41 RGAMGIMLVYDITNEK-SFDNIKNWIRNIEENASANVEKML 80 (83)
Q Consensus 41 ~~~~~~ilv~d~~~~~-s~~~~~~w~~~~~~~~~~~~piil 80 (83)
.++|+++++--.-.+- +-+.+-.+++.+.+ ++|+++
T Consensus 87 ~Gadavlv~~P~y~~~~~~~~l~~~f~~va~----~lPiil 123 (283)
T 2pcq_A 87 AGAMALLATPPRYYHGSLGAGLLRYYEALAE----KMPLFL 123 (283)
T ss_dssp HTCSEEEECCCCTTGGGTTTHHHHHHHHHHH----HSCEEE
T ss_pred cCCCEEEecCCcCCCCCCHHHHHHHHHHHhc----CCCEEE
Confidence 4899998876555555 66777788888876 578776
No 401
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=42.65 E-value=3.2 Score=24.98 Aligned_cols=14 Identities=7% Similarity=-0.175 Sum_probs=10.8
Q ss_pred CCcceeeeeeccCc
Q psy16649 1 SGENLCTLQIFRGC 14 (83)
Q Consensus 1 ~GKss~~~~~~~~~ 14 (83)
|||||++.-+..-.
T Consensus 58 sGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 58 AGKTTLLNILNAYE 71 (279)
T ss_dssp SSHHHHHHHHTTSS
T ss_pred CcHHHHHHHHhCCC
Confidence 79999998765543
No 402
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}
Probab=42.59 E-value=40 Score=20.70 Aligned_cols=45 Identities=4% Similarity=0.087 Sum_probs=25.9
Q ss_pred hhccCCcEEEEEEECCCh------hHHHH----HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 38 AYYRGAMGIMLVYDITNE------KSFDN----IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 38 ~~~~~~~~~ilv~d~~~~------~s~~~----~~~w~~~~~~~~~~~~piilvgN 83 (83)
.-+++||.+++.-..... +-+.. ++...+.+.+.+ ++.-+++++|
T Consensus 65 ~a~~~aDvVii~ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vivvtN 119 (314)
T 3nep_X 65 GPTEDSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGS-PDSTIIVVAN 119 (314)
T ss_dssp GGGTTCSEEEECCCC-------CHHHHHHHHHHHHHHHHHHHTTC-TTCEEEECCS
T ss_pred HHhCCCCEEEECCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHHhC-CCcEEEecCC
Confidence 346789999988654432 22211 234555555554 6777888877
No 403
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=42.45 E-value=2.4 Score=23.21 Aligned_cols=12 Identities=17% Similarity=0.421 Sum_probs=10.2
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
|||||+...+..
T Consensus 11 sGKsT~~~~L~~ 22 (195)
T 2pbr_A 11 SGKTTQAKKLYE 22 (195)
T ss_dssp SCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 799999988866
No 404
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*
Probab=42.40 E-value=59 Score=20.06 Aligned_cols=45 Identities=13% Similarity=0.144 Sum_probs=28.5
Q ss_pred hhccCCcEEEEEEECCC------hhHHH----HHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 38 AYYRGAMGIMLVYDITN------EKSFD----NIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 38 ~~~~~~~~~ilv~d~~~------~~s~~----~~~~w~~~~~~~~~~~~piilvgN 83 (83)
.-+++||.+|+...... .+.+. -++...+.+.+.+ ++..+++++|
T Consensus 71 ~a~~~aDiVIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~iivvtN 125 (324)
T 3gvi_A 71 AAIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYA-PEAFVICITN 125 (324)
T ss_dssp GGGTTCSEEEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCS
T ss_pred HHHCCCCEEEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHC-CCeEEEecCC
Confidence 34668999998754332 22332 2345666777776 7888888877
No 405
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=42.35 E-value=2.5 Score=23.15 Aligned_cols=12 Identities=17% Similarity=0.277 Sum_probs=8.9
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
|||||+...+..
T Consensus 14 sGKsT~a~~L~~ 25 (196)
T 1tev_A 14 AGKGTQCARIVE 25 (196)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 789988877643
No 406
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=42.35 E-value=2.5 Score=23.68 Aligned_cols=12 Identities=33% Similarity=0.196 Sum_probs=9.1
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
||||+++..+..
T Consensus 31 sGKTtl~~~l~~ 42 (220)
T 2cvh_A 31 SGKTTLALQTGL 42 (220)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 688888877754
No 407
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=42.14 E-value=2.5 Score=23.94 Aligned_cols=13 Identities=15% Similarity=0.401 Sum_probs=10.2
Q ss_pred CCcceeeeeeccC
Q psy16649 1 SGENLCTLQIFRG 13 (83)
Q Consensus 1 ~GKss~~~~~~~~ 13 (83)
|||||++..+...
T Consensus 19 sGKsTl~~~L~~~ 31 (208)
T 3tau_A 19 VGKGTVREAVFKD 31 (208)
T ss_dssp SCHHHHHHHHHHS
T ss_pred CCHHHHHHHHHhh
Confidence 6999998887654
No 408
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=42.12 E-value=2.5 Score=23.66 Aligned_cols=12 Identities=17% Similarity=0.075 Sum_probs=9.7
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
|||||+...+..
T Consensus 13 sGKST~~~~La~ 24 (206)
T 1jjv_A 13 SGKTTIANLFTD 24 (206)
T ss_dssp SCHHHHHHHHHT
T ss_pred CCHHHHHHHHHH
Confidence 799998888755
No 409
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=42.03 E-value=30 Score=18.98 Aligned_cols=34 Identities=9% Similarity=0.086 Sum_probs=23.0
Q ss_pred hhhccCCcEEEEEEECCChhHHHHHHHHHHHHHH
Q psy16649 37 TAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE 70 (83)
Q Consensus 37 ~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~ 70 (83)
..-+..+|++|+..-+-.-.--..++.|++.+..
T Consensus 66 ~~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~ 99 (200)
T 2a5l_A 66 LEDLKNCAGLALGSPTRFGNMASPLKYFLDGTSS 99 (200)
T ss_dssp HHHHHTCSEEEEEEECBTTBCCHHHHHHHHTCHH
T ss_pred HHHHHHCCEEEEEcChhccCccHHHHHHHHHHHH
Confidence 3456789999999877665444456667666543
No 410
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=41.88 E-value=2.6 Score=23.57 Aligned_cols=12 Identities=17% Similarity=0.232 Sum_probs=9.9
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
|||||+...+..
T Consensus 21 sGKST~~~~L~~ 32 (212)
T 2wwf_A 21 SGKSTQSKLLVE 32 (212)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 799999888764
No 411
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=41.85 E-value=40 Score=19.72 Aligned_cols=57 Identities=11% Similarity=0.313 Sum_probs=28.4
Q ss_pred eEEEEEEEeCCCchh-hhcch-hhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 17 HNFHINYRDTAGQER-FRTIT-TAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~-~~~~~-~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
..+.+.+.++.+... ..... ...-++.||+|++-.-.+.+ .++.+.+ ..+|+|++++
T Consensus 56 ~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~-------~~~~l~~---~~iPvV~i~~ 114 (305)
T 3huu_A 56 RGYSTRMTVSENSGDLYHEVKTMIQSKSVDGFILLYSLKDDP-------IEHLLNE---FKVPYLIVGK 114 (305)
T ss_dssp HTCEEEECCCSSHHHHHHHHHHHHHTTCCSEEEESSCBTTCH-------HHHHHHH---TTCCEEEESC
T ss_pred CCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCcCCcH-------HHHHHHH---cCCCEEEECC
Confidence 345666766655432 22222 23346789988753211111 2222222 4688888763
No 412
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=41.59 E-value=2.6 Score=23.44 Aligned_cols=12 Identities=17% Similarity=0.094 Sum_probs=10.0
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
|||||+...+..
T Consensus 15 sGKsT~~~~L~~ 26 (213)
T 2plr_A 15 SGKSSQATLLKD 26 (213)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 799999888765
No 413
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=41.57 E-value=2.6 Score=23.61 Aligned_cols=11 Identities=9% Similarity=0.060 Sum_probs=7.8
Q ss_pred CCcceeeeeec
Q psy16649 1 SGENLCTLQIF 11 (83)
Q Consensus 1 ~GKss~~~~~~ 11 (83)
|||||+...+.
T Consensus 36 sGKsTl~~~La 46 (199)
T 3vaa_A 36 AGKTTLGKAFA 46 (199)
T ss_dssp SCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 67888777654
No 414
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=41.55 E-value=3.4 Score=24.70 Aligned_cols=14 Identities=14% Similarity=0.074 Sum_probs=10.6
Q ss_pred CCcceeeeeeccCc
Q psy16649 1 SGENLCTLQIFRGC 14 (83)
Q Consensus 1 ~GKss~~~~~~~~~ 14 (83)
|||||++.-+..-.
T Consensus 56 sGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 56 SGKSTVAALLQNLY 69 (271)
T ss_dssp SSHHHHHHHHTTSS
T ss_pred CCHHHHHHHHhcCC
Confidence 79999988765543
No 415
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=41.52 E-value=2.6 Score=23.69 Aligned_cols=11 Identities=27% Similarity=0.244 Sum_probs=8.3
Q ss_pred CCcceeeeeec
Q psy16649 1 SGENLCTLQIF 11 (83)
Q Consensus 1 ~GKss~~~~~~ 11 (83)
||||+++..+.
T Consensus 33 sGKstl~~~l~ 43 (201)
T 1rz3_A 33 SGKTTLANQLS 43 (201)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 68888877654
No 416
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=41.15 E-value=54 Score=19.94 Aligned_cols=38 Identities=16% Similarity=0.129 Sum_probs=28.3
Q ss_pred cCCcEEEEEEECCCh--hHHHHHHHHHHHHHHhcCCCceEEE
Q psy16649 41 RGAMGIMLVYDITNE--KSFDNIKNWIRNIEENASANVEKML 80 (83)
Q Consensus 41 ~~~~~~ilv~d~~~~--~s~~~~~~w~~~~~~~~~~~~piil 80 (83)
.++|+++++--.-.+ -+-+.+-++++.+.+.. ++|+++
T Consensus 108 ~Gadavlv~~P~y~~~~~s~~~l~~~f~~ia~a~--~lPiil 147 (307)
T 3s5o_A 108 VGADAAMVVTPCYYRGRMSSAALIHHYTKVADLS--PIPVVL 147 (307)
T ss_dssp TTCSEEEEECCCTTGGGCCHHHHHHHHHHHHHHC--SSCEEE
T ss_pred cCCCEEEEcCCCcCCCCCCHHHHHHHHHHHHhhc--CCCEEE
Confidence 489999998655543 36677888888887764 588876
No 417
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*
Probab=41.00 E-value=60 Score=19.74 Aligned_cols=44 Identities=7% Similarity=-0.007 Sum_probs=27.0
Q ss_pred hccCCcEEEEEEECCChh------H-HH---HHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 39 YYRGAMGIMLVYDITNEK------S-FD---NIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 39 ~~~~~~~~ilv~d~~~~~------s-~~---~~~~w~~~~~~~~~~~~piilvgN 83 (83)
-+++||.+++...+.... . .. -.+...+.+.+.+ ++..+++++|
T Consensus 71 al~~aDvViia~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~~iv~tN 124 (316)
T 1ldn_A 71 DCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASG-FQGLFLVATN 124 (316)
T ss_dssp GTTTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHT-CCSEEEECSS
T ss_pred HhCCCCEEEEcCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHC-CCCEEEEeCC
Confidence 467899999885444321 1 12 2345666777766 6666777776
No 418
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=40.93 E-value=2.6 Score=22.93 Aligned_cols=12 Identities=8% Similarity=0.188 Sum_probs=7.1
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
|||||+...+..
T Consensus 16 sGKST~a~~La~ 27 (183)
T 2vli_A 16 VGKTHTAHTLHE 27 (183)
T ss_dssp ---CHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 799999888753
No 419
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=40.85 E-value=79 Score=21.43 Aligned_cols=38 Identities=21% Similarity=0.176 Sum_probs=27.7
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEe
Q psy16649 42 GAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLG 82 (83)
Q Consensus 42 ~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvg 82 (83)
+++++.+ +.....+...++..++++++.. .++|+++-|
T Consensus 149 ~~diVgL--S~l~t~~~~~m~~~i~~Lr~~g-~~i~ViVGG 186 (579)
T 3bul_A 149 NADLIGL--SGLITPSLDEMVNVAKEMERQG-FTIPLLIGG 186 (579)
T ss_dssp TCSEEEE--ECCSTHHHHHHHHHHHHHHHTT-CCSCEEEES
T ss_pred CCCEEEE--EecCCCCHHHHHHHHHHHHHcC-CCCeEEEEc
Confidence 5565554 4555677888999999998854 589988766
No 420
>3h4x_A Phosphatidylinositol-specific phospholipase C1; PI-PLC, Ca2+-dependent, catalytic TIM barrel, disulfide-LINK loop, hydrolase; 1.23A {Streptomyces antibioticus} PDB: 3h4w_A
Probab=40.83 E-value=7.3 Score=24.51 Aligned_cols=26 Identities=12% Similarity=0.121 Sum_probs=15.7
Q ss_pred eeeeeccCccceEEEEEEEeCCCchhhh
Q psy16649 6 CTLQIFRGCFQHNFHINYRDTAGQERFR 33 (83)
Q Consensus 6 ~~~~~~~~~~~~~~~l~i~Dt~g~~~~~ 33 (83)
+..++..|. .-++|++|+-+...++.
T Consensus 48 i~~qLd~GV--R~LELDIw~n~~~g~~~ 73 (339)
T 3h4x_A 48 FADALDSGA--ALLELDLWSNALGRSWR 73 (339)
T ss_dssp HHHHHTTCC--SEEEEEEESSSSSSSCE
T ss_pred HHHHHHhCC--CEEEEEeecCCCCCCeE
Confidence 333444443 77899999875544443
No 421
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=40.81 E-value=2.8 Score=23.76 Aligned_cols=12 Identities=8% Similarity=0.122 Sum_probs=8.8
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
|||||+...+..
T Consensus 16 sGKSTl~~~L~~ 27 (227)
T 1cke_A 16 AGKGTLCKAMAE 27 (227)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 688888777653
No 422
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=40.60 E-value=32 Score=21.41 Aligned_cols=44 Identities=5% Similarity=0.022 Sum_probs=27.5
Q ss_pred hccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcC-CCceEEEEe
Q psy16649 39 YYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENAS-ANVEKMLLG 82 (83)
Q Consensus 39 ~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~-~~~piilvg 82 (83)
.+..+|++++....-.-.-...++.+++.+..... .+-|+.+++
T Consensus 304 ~l~~~D~iiigsP~y~~~~~~~~k~fld~l~~~~~~~~K~~~~~~ 348 (414)
T 2q9u_A 304 HTYDSGAVAFASPTLNNTMMPSVAAALNYVRGLTLIKGKPAFAFG 348 (414)
T ss_dssp HHHTCSEEEEECCCBTTBCCHHHHHHHHHHHHHTTTTTSBEEEEE
T ss_pred HHHhCCEEEEEcCccCcCchHHHHHHHHHHHhhcccCCCEEEEEE
Confidence 46688999998766655444456777777654332 345555554
No 423
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=40.58 E-value=8.5 Score=25.17 Aligned_cols=13 Identities=23% Similarity=0.212 Sum_probs=10.2
Q ss_pred EEEEEEEeCCCch
Q psy16649 18 NFHINYRDTAGQE 30 (83)
Q Consensus 18 ~~~l~i~Dt~g~~ 30 (83)
.+.+-+.||.|..
T Consensus 139 ~~~vlllDTEG~~ 151 (457)
T 4ido_A 139 KVAVLLMDTQGTF 151 (457)
T ss_dssp EEEEEEEEECCBT
T ss_pred eeEEEEEeccCCC
Confidence 4678899999854
No 424
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=40.52 E-value=3.6 Score=24.33 Aligned_cols=13 Identities=8% Similarity=-0.038 Sum_probs=9.6
Q ss_pred CCcceeeeeeccC
Q psy16649 1 SGENLCTLQIFRG 13 (83)
Q Consensus 1 ~GKss~~~~~~~~ 13 (83)
|||||++.-+..-
T Consensus 42 sGKSTLl~~l~Gl 54 (253)
T 2nq2_C 42 CGKSTLLDLLLGI 54 (253)
T ss_dssp SSHHHHHHHHTTS
T ss_pred CCHHHHHHHHhCC
Confidence 7999998876543
No 425
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=40.36 E-value=3.7 Score=24.53 Aligned_cols=14 Identities=21% Similarity=-0.038 Sum_probs=10.9
Q ss_pred CCcceeeeeeccCc
Q psy16649 1 SGENLCTLQIFRGC 14 (83)
Q Consensus 1 ~GKss~~~~~~~~~ 14 (83)
|||||++.-+..-.
T Consensus 41 sGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 41 SGKTTLLRAISGLL 54 (263)
T ss_dssp SSHHHHHHHHTTSS
T ss_pred CCHHHHHHHHhCCC
Confidence 79999988876554
No 426
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=39.97 E-value=2.9 Score=23.22 Aligned_cols=13 Identities=23% Similarity=0.417 Sum_probs=10.9
Q ss_pred CCcceeeeeeccC
Q psy16649 1 SGENLCTLQIFRG 13 (83)
Q Consensus 1 ~GKss~~~~~~~~ 13 (83)
|||||+...+...
T Consensus 15 sGKsT~~~~L~~~ 27 (204)
T 2v54_A 15 SGKTTQCMNIMES 27 (204)
T ss_dssp SSHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHH
Confidence 7999999888764
No 427
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=39.85 E-value=3.9 Score=24.32 Aligned_cols=12 Identities=17% Similarity=0.299 Sum_probs=9.1
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
|||||++..+..
T Consensus 36 sGKSTll~~l~g 47 (261)
T 2eyu_A 36 SGKSTTIASMID 47 (261)
T ss_dssp CSHHHHHHHHHH
T ss_pred ccHHHHHHHHHH
Confidence 799998877543
No 428
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=39.82 E-value=2.9 Score=23.04 Aligned_cols=12 Identities=17% Similarity=0.254 Sum_probs=9.6
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
||||++...+..
T Consensus 24 sGKsT~~~~L~~ 35 (186)
T 2yvu_A 24 SGKTTIATRLAD 35 (186)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 799999887654
No 429
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=39.80 E-value=2.9 Score=22.89 Aligned_cols=12 Identities=8% Similarity=0.321 Sum_probs=9.8
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
|||||+...+..
T Consensus 16 sGKST~~~~L~~ 27 (179)
T 2pez_A 16 AGKTTVSMALEE 27 (179)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 799999887755
No 430
>4es1_A BH0342 protein; ferredoxin, nuclease, hydrolase; 1.10A {Bacillus halodurans} PDB: 4es2_A 4es3_A
Probab=39.70 E-value=39 Score=17.22 Aligned_cols=11 Identities=18% Similarity=0.625 Sum_probs=8.7
Q ss_pred EEEEEEECCCh
Q psy16649 45 GIMLVYDITNE 55 (83)
Q Consensus 45 ~~ilv~d~~~~ 55 (83)
-+|++||+++.
T Consensus 6 ~vlv~YDI~~~ 16 (100)
T 4es1_A 6 LVLITYDVQTS 16 (100)
T ss_dssp EEEEEEECCTT
T ss_pred EEEEEEECCCC
Confidence 47889999874
No 431
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=39.68 E-value=2.9 Score=22.89 Aligned_cols=12 Identities=17% Similarity=0.279 Sum_probs=8.3
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
||||++...+..
T Consensus 16 sGKst~a~~La~ 27 (185)
T 3trf_A 16 AGKTSVGSQLAK 27 (185)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 678887776643
No 432
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}
Probab=39.66 E-value=34 Score=21.35 Aligned_cols=39 Identities=18% Similarity=0.329 Sum_probs=28.4
Q ss_pred cCCcEEEEEEECCCh-hHHHHHHHHHHHHHHhcCCCceEEE
Q psy16649 41 RGAMGIMLVYDITNE-KSFDNIKNWIRNIEENASANVEKML 80 (83)
Q Consensus 41 ~~~~~~ilv~d~~~~-~s~~~~~~w~~~~~~~~~~~~piil 80 (83)
.++|+++++--.-.+ -+-+.+-.+++.+.+.. .++|++|
T Consensus 117 ~Gadavlv~~P~y~~~~s~~~l~~~f~~IA~aa-~~lPiil 156 (344)
T 2hmc_A 117 VGAKGLMVIPRVLSRGSVIAAQKAHFKAILSAA-PEIPAVI 156 (344)
T ss_dssp HTCSEEEECCCCSSSTTCHHHHHHHHHHHHHHS-TTSCEEE
T ss_pred cCCCEEEECCCccCCCCCHHHHHHHHHHHHhhC-CCCcEEE
Confidence 489999988655555 56678888888887622 3688876
No 433
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=39.49 E-value=2 Score=26.82 Aligned_cols=28 Identities=7% Similarity=0.144 Sum_probs=18.4
Q ss_pred CCcceeeeeeccCccceEEEEEEEeCCC
Q psy16649 1 SGENLCTLQIFRGCFQHNFHINYRDTAG 28 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~~~~~l~i~Dt~g 28 (83)
||||+++..+..........+.+.|..|
T Consensus 46 ~GKs~~~~~~~~~~~~~~~~~~~~D~~~ 73 (392)
T 4ag6_A 46 AGKSFTAKMLLLREYMQGSRVIIIDPER 73 (392)
T ss_dssp SSHHHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 6999988876654433344566778655
No 434
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=39.48 E-value=3 Score=25.53 Aligned_cols=12 Identities=8% Similarity=0.069 Sum_probs=8.9
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
|||||++..+..
T Consensus 101 sGKSTL~~~L~g 112 (312)
T 3aez_A 101 VGKSTTARVLQA 112 (312)
T ss_dssp SCHHHHHHHHHH
T ss_pred chHHHHHHHHHh
Confidence 689988876543
No 435
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=39.45 E-value=3 Score=23.75 Aligned_cols=12 Identities=8% Similarity=0.091 Sum_probs=10.2
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
||||+++..+..
T Consensus 35 sGKTtl~~~l~~ 46 (243)
T 1n0w_A 35 TGKTQICHTLAV 46 (243)
T ss_dssp SSHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 799999988765
No 436
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=39.22 E-value=3 Score=22.85 Aligned_cols=12 Identities=8% Similarity=0.285 Sum_probs=9.3
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
||||+++..+..
T Consensus 49 ~GKTtL~~~i~~ 60 (180)
T 3ec2_A 49 VGKTHLAVATLK 60 (180)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 699999877643
No 437
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=39.21 E-value=21 Score=18.94 Aligned_cols=37 Identities=22% Similarity=0.379 Sum_probs=23.0
Q ss_pred cceeeeeeccCccceEEEEEEEeCCCchhhhcchhhhccC
Q psy16649 3 ENLCTLQIFRGCFQHNFHINYRDTAGQERFRTITTAYYRG 42 (83)
Q Consensus 3 Kss~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~ 42 (83)
.+.+..+|..+ ..+.+.+.|..|.+-|+--....|.+
T Consensus 31 ~~~v~l~f~Sg---q~~Df~v~d~~G~~VwrwS~~~~FtQ 67 (120)
T 3isy_A 31 ERAIEFQFSTG---QKFELVVYDSEHKERYRYSKEKMFTQ 67 (120)
T ss_dssp SSCEEEEESSS---CCEEEEEECTTCCEEEETTTTCCCCC
T ss_pred CCcEEEEeCCC---CEEEEEEECCCCCEEEEccccchhhh
Confidence 34455555555 77888899988876664443444443
No 438
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=39.20 E-value=4.1 Score=23.86 Aligned_cols=13 Identities=8% Similarity=-0.013 Sum_probs=10.6
Q ss_pred CCcceeeeeeccC
Q psy16649 1 SGENLCTLQIFRG 13 (83)
Q Consensus 1 ~GKss~~~~~~~~ 13 (83)
|||||++..+...
T Consensus 35 sGKST~~~~L~~~ 47 (263)
T 1p5z_B 35 AGKSTFVNILKQL 47 (263)
T ss_dssp SSHHHHHTTTGGG
T ss_pred CCHHHHHHHHHHh
Confidence 7999999887654
No 439
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=39.05 E-value=2.9 Score=22.43 Aligned_cols=12 Identities=25% Similarity=0.266 Sum_probs=9.3
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
||||++...+..
T Consensus 11 sGKsT~a~~L~~ 22 (168)
T 2pt5_A 11 SGKSTVGSLLSR 22 (168)
T ss_dssp SCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 688888877754
No 440
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=39.04 E-value=4 Score=25.69 Aligned_cols=14 Identities=7% Similarity=-0.211 Sum_probs=10.5
Q ss_pred CCcceeeeeeccCc
Q psy16649 1 SGENLCTLQIFRGC 14 (83)
Q Consensus 1 ~GKss~~~~~~~~~ 14 (83)
|||||+++.+..-.
T Consensus 41 sGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 41 CGKTTLLRCLAGFE 54 (359)
T ss_dssp SSHHHHHHHHHTSS
T ss_pred chHHHHHHHHhcCC
Confidence 79999988765543
No 441
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=38.99 E-value=3 Score=23.28 Aligned_cols=12 Identities=8% Similarity=0.285 Sum_probs=9.5
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
|||||+...+..
T Consensus 20 sGKsT~~~~L~~ 31 (215)
T 1nn5_A 20 AGKSTQSRKLVE 31 (215)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 799998887764
No 442
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=38.93 E-value=3 Score=23.93 Aligned_cols=12 Identities=8% Similarity=0.152 Sum_probs=9.1
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
|||||++..+..
T Consensus 30 aGKsTL~~~L~~ 41 (197)
T 3ney_A 30 VGRSHIKNALLS 41 (197)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHh
Confidence 689998877653
No 443
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=38.81 E-value=3 Score=23.58 Aligned_cols=10 Identities=10% Similarity=0.092 Sum_probs=6.7
Q ss_pred CCcceeeeee
Q psy16649 1 SGENLCTLQI 10 (83)
Q Consensus 1 ~GKss~~~~~ 10 (83)
|||||++..+
T Consensus 12 ~GKTTll~~l 21 (189)
T 2i3b_A 12 VGKTTLIHKA 21 (189)
T ss_dssp SCHHHHHHHH
T ss_pred ChHHHHHHHH
Confidence 5788776553
No 444
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=38.79 E-value=33 Score=18.53 Aligned_cols=32 Identities=9% Similarity=-0.073 Sum_probs=22.9
Q ss_pred hhccCCcEEEEEEECCChhHHHHHHHHHHHHH
Q psy16649 38 AYYRGAMGIMLVYDITNEKSFDNIKNWIRNIE 69 (83)
Q Consensus 38 ~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~ 69 (83)
.-+..+|++|+.+-+-.-.--..++.|++.+.
T Consensus 67 ~~l~~aD~ii~~~P~y~~~~p~~lK~~iD~~~ 98 (184)
T 1rli_A 67 ERILQCHILIFATPIYWFGMSGTLKLFIDRWS 98 (184)
T ss_dssp HHHHTCSEEEEEEECBTTBCCHHHHHHHHTHH
T ss_pred HHHHhCCEEEEEeCccccCCcHHHHHHHHHhH
Confidence 35679999999988776554455667776653
No 445
>2i0x_A Hypothetical protein PF1117; PSI, STRU genomics, southeast collaboratory for structural genomics, structure initiative, secsg; 2.70A {Pyrococcus furiosus} SCOP: d.58.58.1
Probab=38.78 E-value=30 Score=16.93 Aligned_cols=9 Identities=44% Similarity=0.855 Sum_probs=7.5
Q ss_pred EEEEEECCC
Q psy16649 46 IMLVYDITN 54 (83)
Q Consensus 46 ~ilv~d~~~ 54 (83)
++++||+++
T Consensus 3 vlv~YDI~~ 11 (85)
T 2i0x_A 3 IVVVYDVGV 11 (85)
T ss_dssp EEEEEECCS
T ss_pred EEEEeeCCh
Confidence 688899977
No 446
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=38.71 E-value=3.2 Score=24.59 Aligned_cols=12 Identities=25% Similarity=0.509 Sum_probs=9.1
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
||||+++..+..
T Consensus 41 sGKTtl~~~l~~ 52 (279)
T 1nlf_A 41 AGKSMLALQLAA 52 (279)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 688888877653
No 447
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=38.69 E-value=1.4 Score=24.57 Aligned_cols=12 Identities=17% Similarity=0.293 Sum_probs=9.2
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
|||||++..+..
T Consensus 13 sGKSTL~~~L~~ 24 (171)
T 2f1r_A 13 SGKTTLITRMMP 24 (171)
T ss_dssp HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 699999877653
No 448
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=38.65 E-value=4.1 Score=25.57 Aligned_cols=14 Identities=21% Similarity=-0.085 Sum_probs=10.6
Q ss_pred CCcceeeeeeccCc
Q psy16649 1 SGENLCTLQIFRGC 14 (83)
Q Consensus 1 ~GKss~~~~~~~~~ 14 (83)
|||||++..+..-.
T Consensus 52 sGKSTLLr~iaGl~ 65 (355)
T 1z47_A 52 SGKTTILRLIAGLE 65 (355)
T ss_dssp SSHHHHHHHHHTSS
T ss_pred CcHHHHHHHHhCCC
Confidence 79999998765443
No 449
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=38.54 E-value=17 Score=22.05 Aligned_cols=12 Identities=8% Similarity=0.116 Sum_probs=9.0
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
+|||++...+..
T Consensus 49 ~GKT~la~~la~ 60 (373)
T 1jr3_A 49 VGKTSIARLLAK 60 (373)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 699998877643
No 450
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*
Probab=38.52 E-value=53 Score=20.20 Aligned_cols=44 Identities=11% Similarity=0.060 Sum_probs=26.5
Q ss_pred hccCCcEEEEEEECCChh------HH----HHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 39 YYRGAMGIMLVYDITNEK------SF----DNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 39 ~~~~~~~~ilv~d~~~~~------s~----~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
-+++||.+|+........ .+ .-++...+.+.+++ ++.-++++.|
T Consensus 73 a~~~aDvVii~ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tN 126 (326)
T 2zqz_A 73 DAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSG-FNGIFLVAAN 126 (326)
T ss_dssp GGGGCSEEEECCCCC-----CHHHHHHHHHHHHHHHHHHHHHHT-CCSEEEECSS
T ss_pred HhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCC
Confidence 367899999886554332 11 22345666666666 6777777776
No 451
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=38.50 E-value=4.5 Score=21.80 Aligned_cols=9 Identities=22% Similarity=0.069 Sum_probs=5.7
Q ss_pred CCcceeeee
Q psy16649 1 SGENLCTLQ 9 (83)
Q Consensus 1 ~GKss~~~~ 9 (83)
||||+++..
T Consensus 34 sGKStil~A 42 (149)
T 1f2t_A 34 SGKSSLLDA 42 (149)
T ss_dssp SSHHHHHHH
T ss_pred CCHHHHHHH
Confidence 577776544
No 452
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=38.43 E-value=26 Score=19.85 Aligned_cols=46 Identities=17% Similarity=0.029 Sum_probs=26.5
Q ss_pred hhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhc---CCCceEEEEe
Q psy16649 37 TAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENA---SANVEKMLLG 82 (83)
Q Consensus 37 ~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~---~~~~piilvg 82 (83)
..-+..||++|++.-.-+-.-=-.++.|++.+.... -.+-|+.+++
T Consensus 68 ~~~i~~AD~iVi~tP~Y~~s~p~~LK~~iD~~~~~~~~~l~gK~v~~v~ 116 (199)
T 4hs4_A 68 AQQIATADAVVIVTPEYNYSVPGVLKNAIDWLSRVSPQPLAGKPVALVT 116 (199)
T ss_dssp HHHHHHSSEEEEEECCBTTBCCHHHHHHHHHHTTSSSCTTTTCEEEEEE
T ss_pred HHHHHhCCEEEEEcCccCCCcCHHHHHHHHHhcccCCcccCCCEEEEEE
Confidence 344678999999976655433344556666664311 1345555554
No 453
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=38.39 E-value=3.2 Score=23.30 Aligned_cols=13 Identities=15% Similarity=0.217 Sum_probs=9.8
Q ss_pred CCcceeeeeeccC
Q psy16649 1 SGENLCTLQIFRG 13 (83)
Q Consensus 1 ~GKss~~~~~~~~ 13 (83)
|||||+...+...
T Consensus 32 sGKSTl~~~L~~~ 44 (207)
T 2qt1_A 32 SGKTTLAKNLQKH 44 (207)
T ss_dssp SSHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHh
Confidence 6899888877553
No 454
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=38.21 E-value=9.4 Score=23.73 Aligned_cols=28 Identities=14% Similarity=0.115 Sum_probs=16.4
Q ss_pred CCcceeeeeeccCccceEEEEEEEeCCC
Q psy16649 1 SGENLCTLQIFRGCFQHNFHINYRDTAG 28 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~~~~~l~i~Dt~g 28 (83)
||||++..++........-..-+.|+..
T Consensus 72 sGKTtLal~la~~~~~~g~~vlyi~~E~ 99 (349)
T 2zr9_A 72 SGKTTVALHAVANAQAAGGIAAFIDAEH 99 (349)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 7999999887643321112344566543
No 455
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=37.89 E-value=50 Score=17.98 Aligned_cols=21 Identities=14% Similarity=0.359 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhcCCCceEEEEe
Q psy16649 61 IKNWIRNIEENASANVEKMLLG 82 (83)
Q Consensus 61 ~~~w~~~~~~~~~~~~piilvg 82 (83)
++...+.+++. .+..|+||+|
T Consensus 131 ~~~~~~~l~~~-~~~~pvIl~G 151 (250)
T 4f1h_A 131 LRVVLQKIKEA-PEDAIVIFAG 151 (250)
T ss_dssp HHHHHHHHHHS-CTTEEEEEEE
T ss_pred HHHHHHHHHhc-CCCCCEEEEE
Confidence 33444444433 3678999987
No 456
>3sf4_D Protein inscuteable homolog; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=37.70 E-value=30 Score=15.32 Aligned_cols=14 Identities=14% Similarity=0.700 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHhc
Q psy16649 59 DNIKNWIRNIEENA 72 (83)
Q Consensus 59 ~~~~~w~~~~~~~~ 72 (83)
+++++|.++++...
T Consensus 9 DSVqrWmeDLr~MT 22 (52)
T 3sf4_D 9 DSVQRWMEDLKLMT 22 (52)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhhh
Confidence 56889999998653
No 457
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=37.68 E-value=61 Score=19.62 Aligned_cols=13 Identities=8% Similarity=0.176 Sum_probs=10.4
Q ss_pred CCcceeeeeeccC
Q psy16649 1 SGENLCTLQIFRG 13 (83)
Q Consensus 1 ~GKss~~~~~~~~ 13 (83)
||||++...+...
T Consensus 56 tGKT~la~ala~~ 68 (322)
T 1xwi_A 56 TGKSYLAKAVATE 68 (322)
T ss_dssp SCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHH
Confidence 7999999887654
No 458
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=37.60 E-value=48 Score=20.26 Aligned_cols=38 Identities=11% Similarity=0.245 Sum_probs=27.6
Q ss_pred CC-cEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEE
Q psy16649 42 GA-MGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLL 81 (83)
Q Consensus 42 ~~-~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilv 81 (83)
++ |+++++--.-.+-+-+.+-.+++.+.+.. ++|+++-
T Consensus 102 Ga~davlv~~P~y~~~s~~~l~~~f~~va~a~--~lPiilY 140 (311)
T 3h5d_A 102 GGFAAGLAIVPYYNKPSQEGMYQHFKAIADAS--DLPIIIY 140 (311)
T ss_dssp CCCSEEEEECCCSSCCCHHHHHHHHHHHHHSC--SSCEEEE
T ss_pred CCCcEEEEcCCCCCCCCHHHHHHHHHHHHHhC--CCCEEEE
Confidence 55 99998865545556677888888887764 6888763
No 459
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=37.59 E-value=3.3 Score=22.61 Aligned_cols=12 Identities=33% Similarity=0.404 Sum_probs=8.3
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
||||++...+..
T Consensus 17 sGKsT~~~~L~~ 28 (194)
T 1qf9_A 17 SGKGTQCANIVR 28 (194)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 688887776643
No 460
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=37.57 E-value=4.4 Score=25.50 Aligned_cols=14 Identities=21% Similarity=0.062 Sum_probs=10.6
Q ss_pred CCcceeeeeeccCc
Q psy16649 1 SGENLCTLQIFRGC 14 (83)
Q Consensus 1 ~GKss~~~~~~~~~ 14 (83)
|||||+++.+..-.
T Consensus 40 sGKSTLLr~iaGl~ 53 (362)
T 2it1_A 40 SGKSTLLYTIAGIY 53 (362)
T ss_dssp SSHHHHHHHHHTSS
T ss_pred chHHHHHHHHhcCC
Confidence 79999998765443
No 461
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=37.52 E-value=4.4 Score=25.55 Aligned_cols=14 Identities=14% Similarity=-0.107 Sum_probs=10.5
Q ss_pred CCcceeeeeeccCc
Q psy16649 1 SGENLCTLQIFRGC 14 (83)
Q Consensus 1 ~GKss~~~~~~~~~ 14 (83)
|||||+++.+..-.
T Consensus 40 sGKSTLLr~iaGl~ 53 (372)
T 1g29_1 40 CGKTTTLRMIAGLE 53 (372)
T ss_dssp SSHHHHHHHHHTSS
T ss_pred cHHHHHHHHHHcCC
Confidence 79999988765433
No 462
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=37.52 E-value=3.3 Score=22.77 Aligned_cols=11 Identities=27% Similarity=0.274 Sum_probs=8.0
Q ss_pred CCcceeeeeec
Q psy16649 1 SGENLCTLQIF 11 (83)
Q Consensus 1 ~GKss~~~~~~ 11 (83)
|||||+...+.
T Consensus 20 sGKsT~~~~La 30 (196)
T 2c95_A 20 SGKGTQCEKIV 30 (196)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 68888777664
No 463
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=37.48 E-value=58 Score=18.63 Aligned_cols=56 Identities=11% Similarity=0.059 Sum_probs=29.9
Q ss_pred eEEEEEEEeCCCchh-hh-cchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 17 HNFHINYRDTAGQER-FR-TITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 17 ~~~~l~i~Dt~g~~~-~~-~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
..+.+.+.++.+... -. .+....-++.|++|+.-... ...++.+. ..++|++++++
T Consensus 36 ~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~--------~~~~~~l~---~~~iPvV~i~~ 93 (276)
T 3jy6_A 36 RGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN--------PQTVQEIL---HQQMPVVSVDR 93 (276)
T ss_dssp TTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC--------HHHHHHHH---TTSSCEEEESC
T ss_pred CCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc--------HHHHHHHH---HCCCCEEEEec
Confidence 446777777765432 22 22333346889988763222 12222332 25788888763
No 464
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=37.41 E-value=4.4 Score=25.45 Aligned_cols=14 Identities=14% Similarity=0.069 Sum_probs=10.4
Q ss_pred CCcceeeeeeccCc
Q psy16649 1 SGENLCTLQIFRGC 14 (83)
Q Consensus 1 ~GKss~~~~~~~~~ 14 (83)
|||||++.-+..-.
T Consensus 40 sGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 40 CGKTTTLLMLAGIY 53 (359)
T ss_dssp SSHHHHHHHHHTSS
T ss_pred chHHHHHHHHHCCC
Confidence 79999988765443
No 465
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=37.34 E-value=3.3 Score=22.35 Aligned_cols=12 Identities=17% Similarity=0.097 Sum_probs=7.7
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
||||++...+..
T Consensus 18 sGKSTva~~La~ 29 (168)
T 1zuh_A 18 SGKSSLAQELGL 29 (168)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 577777666543
No 466
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=37.28 E-value=3.3 Score=22.80 Aligned_cols=12 Identities=17% Similarity=0.230 Sum_probs=8.4
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
|||||+...+..
T Consensus 23 sGKsT~a~~L~~ 34 (199)
T 2bwj_A 23 SGKGTQCEKLVE 34 (199)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 688887766654
No 467
>3hxl_A Uncharacterized protein DSY3957; alpha-beta three-domained protein., structural genomics, PSI protein structure initiative; 1.90A {Desulfitobacterium hafniense}
Probab=37.27 E-value=80 Score=20.56 Aligned_cols=26 Identities=4% Similarity=0.211 Sum_probs=20.6
Q ss_pred EEEEECCChhHHHHHHHHHHHHHHhc
Q psy16649 47 MLVYDITNEKSFDNIKNWIRNIEENA 72 (83)
Q Consensus 47 ilv~d~~~~~s~~~~~~w~~~~~~~~ 72 (83)
+++++.++......+..|++.+++..
T Consensus 202 ~i~~p~~d~~~~~~l~a~ikr~r~~~ 227 (446)
T 3hxl_A 202 TIALPSTDDALKATFTAFAKRLRDDE 227 (446)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHHHT
T ss_pred EEEecCCCHHHHHHHHHHHHHHHHhc
Confidence 45666788888889999999988743
No 468
>3skv_A SSFX3; jelly roll, GDSL/SGNH fold, alpha/beta hydrolase fold, trans; 2.49A {Streptomyces SP}
Probab=37.24 E-value=35 Score=21.57 Aligned_cols=40 Identities=20% Similarity=0.052 Sum_probs=26.7
Q ss_pred CCcEEEEEEECCC------h-hHHHHHHHHHHHHHHhcCCCceEEEEe
Q psy16649 42 GAMGIMLVYDITN------E-KSFDNIKNWIRNIEENASANVEKMLLG 82 (83)
Q Consensus 42 ~~~~~ilv~d~~~------~-~s~~~~~~w~~~~~~~~~~~~piilvg 82 (83)
..|.+++.+-.+| . +--+++...++.+++.. ++.+|++++
T Consensus 244 ~pdlVvI~lGtND~~~~~~~~~~~~~l~~li~~ir~~~-P~a~Illv~ 290 (385)
T 3skv_A 244 PADLISLRVGTSNFMDGDGFVDFPANLVGFVQIIRERH-PLTPIVLGS 290 (385)
T ss_dssp CCSEEEEEESHHHHTTTCCTTTHHHHHHHHHHHHHTTC-SSSCEEEEE
T ss_pred CCCEEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHHHC-CCCcEEEEc
Confidence 6788888873322 2 33445677888887655 678888875
No 469
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=37.19 E-value=3.3 Score=22.29 Aligned_cols=12 Identities=17% Similarity=0.210 Sum_probs=8.6
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
||||++...+..
T Consensus 13 sGKsT~a~~La~ 24 (173)
T 1e6c_A 13 CGMTTVGRELAR 24 (173)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 688888777654
No 470
>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*
Probab=37.14 E-value=80 Score=20.08 Aligned_cols=46 Identities=15% Similarity=0.165 Sum_probs=27.7
Q ss_pred hhccCCcEEEEEEECCCh---hHHHH-------HHHHHHHHHHhcCCCceEEEEeC
Q psy16649 38 AYYRGAMGIMLVYDITNE---KSFDN-------IKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 38 ~~~~~~~~~ilv~d~~~~---~s~~~-------~~~w~~~~~~~~~~~~piilvgN 83 (83)
.-++++|.+|+.-....+ +..+- ++...+.+.++..++..+++|+|
T Consensus 104 ~~~~daDvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsN 159 (375)
T 7mdh_A 104 EVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGN 159 (375)
T ss_dssp HHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred HHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecC
Confidence 445689999987655432 11221 23345556665457888888887
No 471
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=37.11 E-value=4.5 Score=25.54 Aligned_cols=14 Identities=14% Similarity=-0.107 Sum_probs=10.5
Q ss_pred CCcceeeeeeccCc
Q psy16649 1 SGENLCTLQIFRGC 14 (83)
Q Consensus 1 ~GKss~~~~~~~~~ 14 (83)
|||||++.-+..-.
T Consensus 48 sGKSTLLr~iaGl~ 61 (372)
T 1v43_A 48 CGKTTTLRMIAGLE 61 (372)
T ss_dssp SSHHHHHHHHHTSS
T ss_pred ChHHHHHHHHHcCC
Confidence 79999988765443
No 472
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=36.98 E-value=3.5 Score=24.55 Aligned_cols=12 Identities=17% Similarity=-0.017 Sum_probs=7.9
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
+|||+++..+..
T Consensus 46 ~GKTTl~~~ia~ 57 (296)
T 1cr0_A 46 MGKSTFVRQQAL 57 (296)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 577777766543
No 473
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=36.98 E-value=69 Score=19.34 Aligned_cols=32 Identities=3% Similarity=0.051 Sum_probs=16.5
Q ss_pred EEEEEEEeCCCch--hhhc-chhhhccCCcEEEEE
Q psy16649 18 NFHINYRDTAGQE--RFRT-ITTAYYRGAMGIMLV 49 (83)
Q Consensus 18 ~~~l~i~Dt~g~~--~~~~-~~~~~~~~~~~~ilv 49 (83)
.+.+.+..+...+ .... +....-++.||+|++
T Consensus 101 g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~ 135 (366)
T 3h5t_A 101 DTQLTLIPASPASSVDHVSAQQLVNNAAVDGVVIY 135 (366)
T ss_dssp SCEEEEEECCCCTTCCHHHHHHHHHTCCCSCEEEE
T ss_pred hCCEEEEEcCCCccHHHHHHHHHHHhCCCCEEEEe
Confidence 4455565554322 1222 233334578998876
No 474
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=36.89 E-value=3.6 Score=24.96 Aligned_cols=11 Identities=9% Similarity=0.093 Sum_probs=6.9
Q ss_pred CCcceeeeeec
Q psy16649 1 SGENLCTLQIF 11 (83)
Q Consensus 1 ~GKss~~~~~~ 11 (83)
|||||++..+.
T Consensus 91 sGKSTl~~~L~ 101 (308)
T 1sq5_A 91 VGKSTTARVLQ 101 (308)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 57777766544
No 475
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=36.88 E-value=10 Score=23.83 Aligned_cols=28 Identities=14% Similarity=0.139 Sum_probs=17.2
Q ss_pred CCcceeeeeeccCccceEEEEEEEeCCC
Q psy16649 1 SGENLCTLQIFRGCFQHNFHINYRDTAG 28 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~~~~~l~i~Dt~g 28 (83)
+|||++..++..+.-......-++|+..
T Consensus 85 sGKTtlal~la~~~~~~g~~vlyi~~E~ 112 (366)
T 1xp8_A 85 GGKTTLALAIVAQAQKAGGTCAFIDAEH 112 (366)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 6999999887654321122445667654
No 476
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1
Probab=36.85 E-value=72 Score=19.45 Aligned_cols=43 Identities=12% Similarity=0.044 Sum_probs=25.3
Q ss_pred ccCCcEEEEEEECCCh------hHHH----HHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 40 YRGAMGIMLVYDITNE------KSFD----NIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 40 ~~~~~~~ilv~d~~~~------~s~~----~~~~w~~~~~~~~~~~~piilvgN 83 (83)
+++||.+++....... +.+. -++...+.+.+.+ ++.-++++.|
T Consensus 72 ~~~aDvVii~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~tN 124 (318)
T 1y6j_A 72 VKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYY-NHGVILVVSN 124 (318)
T ss_dssp GTTCSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHHC-CSCEEEECSS
T ss_pred hCCCCEEEEcCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHhC-CCcEEEEecC
Confidence 6789999987654332 1111 1355666666665 6777777665
No 477
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=36.57 E-value=3.4 Score=22.48 Aligned_cols=12 Identities=17% Similarity=0.265 Sum_probs=8.4
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
||||++...+..
T Consensus 15 sGKsTla~~La~ 26 (175)
T 1via_A 15 SGKSTLARALAK 26 (175)
T ss_dssp SCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 688888776643
No 478
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=36.51 E-value=3.5 Score=23.18 Aligned_cols=12 Identities=25% Similarity=0.321 Sum_probs=9.3
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
|||||+...+..
T Consensus 11 sGKsT~a~~L~~ 22 (216)
T 3fb4_A 11 AGKGTQAEQIIE 22 (216)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 789998887743
No 479
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=36.44 E-value=3.5 Score=22.52 Aligned_cols=12 Identities=8% Similarity=0.094 Sum_probs=9.0
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
||||++...+..
T Consensus 22 sGKst~~~~l~~ 33 (180)
T 3iij_A 22 VGKTTLGKELAS 33 (180)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 688888887653
No 480
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=36.43 E-value=4.7 Score=24.48 Aligned_cols=13 Identities=15% Similarity=0.261 Sum_probs=9.5
Q ss_pred CCcceeeeeeccC
Q psy16649 1 SGENLCTLQIFRG 13 (83)
Q Consensus 1 ~GKss~~~~~~~~ 13 (83)
|||||++.-+..-
T Consensus 75 sGKSTLlk~l~Gl 87 (290)
T 2bbs_A 75 AGKTSLLMMIMGE 87 (290)
T ss_dssp SSHHHHHHHHTTS
T ss_pred CcHHHHHHHHhcC
Confidence 6899988776543
No 481
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=36.36 E-value=34 Score=20.55 Aligned_cols=13 Identities=23% Similarity=0.100 Sum_probs=10.7
Q ss_pred CCcceeeeeeccC
Q psy16649 1 SGENLCTLQIFRG 13 (83)
Q Consensus 1 ~GKss~~~~~~~~ 13 (83)
+|||++..++..+
T Consensus 109 sGKT~la~~la~~ 121 (322)
T 2i1q_A 109 SGKTQIMHQSCVN 121 (322)
T ss_dssp SSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 7999999987753
No 482
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=36.29 E-value=5.2 Score=21.56 Aligned_cols=12 Identities=8% Similarity=0.030 Sum_probs=9.6
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
||||+++..+..
T Consensus 47 ~GKTtL~~~i~~ 58 (149)
T 2kjq_A 47 AGKSHLLQAWVA 58 (149)
T ss_dssp TTTCHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 699999887654
No 483
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=36.28 E-value=3.7 Score=25.40 Aligned_cols=11 Identities=9% Similarity=0.099 Sum_probs=8.3
Q ss_pred CCcceeeeeec
Q psy16649 1 SGENLCTLQIF 11 (83)
Q Consensus 1 ~GKss~~~~~~ 11 (83)
|||||++..+.
T Consensus 103 SGKSTl~~~L~ 113 (321)
T 3tqc_A 103 VGKSTTSRVLK 113 (321)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 78999876653
No 484
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=36.24 E-value=13 Score=23.35 Aligned_cols=28 Identities=14% Similarity=0.110 Sum_probs=15.9
Q ss_pred CCcceeeeeeccCccceEEEEEEEeCCC
Q psy16649 1 SGENLCTLQIFRGCFQHNFHINYRDTAG 28 (83)
Q Consensus 1 ~GKss~~~~~~~~~~~~~~~l~i~Dt~g 28 (83)
||||+++.++....-...-.+-+.|+..
T Consensus 72 sGKSTLal~la~~~~~~gg~VlyId~E~ 99 (356)
T 3hr8_A 72 SGKTTLALHAIAEAQKMGGVAAFIDAEH 99 (356)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 7999999887654221111233456654
No 485
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=36.18 E-value=35 Score=19.26 Aligned_cols=46 Identities=9% Similarity=0.148 Sum_probs=27.1
Q ss_pred hhhccCCcEEEEEE---ECCChhHHHHHHHHHHHHHHhcC-CCceEEEEe
Q psy16649 37 TAYYRGAMGIMLVY---DITNEKSFDNIKNWIRNIEENAS-ANVEKMLLG 82 (83)
Q Consensus 37 ~~~~~~~~~~ilv~---d~~~~~s~~~~~~w~~~~~~~~~-~~~piilvg 82 (83)
..-+..||++|++- .-+=+..+.++-+|+........ .+-|+.+++
T Consensus 62 ~~~i~~aD~~ii~tPeYn~s~pg~LKn~iDwlsr~~~~~~~~gKpv~~v~ 111 (190)
T 3u7r_A 62 KDRIEHSDAVLAITPEYNRSYPGMIKNAIDWATRPYGQNSWKGKPAAVIG 111 (190)
T ss_dssp HHHHHTSSEEEEECCCBTTBCCHHHHHHHHHHHCSTTCCTTTTCEEEEEE
T ss_pred HHHHHhCCcEEEechhhcccCCHHHHHHHHHhcccccCCccCCCEEEEEE
Confidence 35677899999984 33345667777777642111111 356766664
No 486
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=36.14 E-value=3.6 Score=22.91 Aligned_cols=11 Identities=9% Similarity=0.205 Sum_probs=7.9
Q ss_pred CCcceeeeeec
Q psy16649 1 SGENLCTLQIF 11 (83)
Q Consensus 1 ~GKss~~~~~~ 11 (83)
|||||+...+.
T Consensus 26 sGKsT~~~~L~ 36 (203)
T 1ukz_A 26 AGKGTQCEKLV 36 (203)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 68888776654
No 487
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=36.04 E-value=53 Score=17.69 Aligned_cols=61 Identities=7% Similarity=0.110 Sum_probs=34.5
Q ss_pred EEEEEeCCCchhhhcchhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 20 HINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 20 ~l~i~Dt~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
...+.|.........+ ..-+..+|++|+....-. ..+. ...++..+........++.++||
T Consensus 35 ~v~~~~~~~~~~~~~~-~~~~~~~d~ii~Gspty~-g~~p-~~~~l~~l~~~~~~~k~va~fgs 95 (159)
T 3fni_A 35 GVDVVDLGAAVDLQEL-RELVGRCTGLVIGMSPAA-SAAS-IQGALSTILGSVNEKQAVGIFET 95 (159)
T ss_dssp EEEEEESSSCCCHHHH-HHHHHTEEEEEEECCBTT-SHHH-HHHHHHHHHHHCCTTSEEEEECC
T ss_pred eEEEEECcCcCCHHHH-HHHHHhCCEEEEEcCcCC-CCcc-HHHHHHHHHhhcccCCEEEEEEc
Confidence 4556676543011111 123456788888766555 3354 35666677655446778888775
No 488
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=36.03 E-value=46 Score=17.01 Aligned_cols=36 Identities=11% Similarity=0.146 Sum_probs=15.8
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHHhcCCCceEEEEe
Q psy16649 42 GAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLG 82 (83)
Q Consensus 42 ~~~~~ilv~d~~~~~s~~~~~~w~~~~~~~~~~~~piilvg 82 (83)
..|.+++=+++.+.+.++ .++.+++.. +.+|++++.
T Consensus 50 ~~dlvi~d~~l~~~~g~~----~~~~l~~~~-~~~~ii~ls 85 (154)
T 2qsj_A 50 TVDLILLDVNLPDAEAID----GLVRLKRFD-PSNAVALIS 85 (154)
T ss_dssp CCSEEEECC------CHH----HHHHHHHHC-TTSEEEEC-
T ss_pred CCCEEEEeCCCCCCchHH----HHHHHHHhC-CCCeEEEEe
Confidence 356655544444433333 334444443 678888764
No 489
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}
Probab=35.99 E-value=75 Score=19.45 Aligned_cols=43 Identities=7% Similarity=0.128 Sum_probs=26.4
Q ss_pred ccCCcEEEEEEECCC------hhHH----HHHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 40 YRGAMGIMLVYDITN------EKSF----DNIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 40 ~~~~~~~ilv~d~~~------~~s~----~~~~~w~~~~~~~~~~~~piilvgN 83 (83)
+++||.+|+...... .+.+ .-.+...+++.+.+ ++..++++.|
T Consensus 80 l~~aD~VI~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~tN 132 (328)
T 2hjr_A 80 LQNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYC-PNAFVICITN 132 (328)
T ss_dssp GTTCSEEEECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCS
T ss_pred HCCCCEEEEcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHC-CCeEEEEecC
Confidence 568899888763322 2222 22456677777776 6766666666
No 490
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=35.99 E-value=4.8 Score=25.57 Aligned_cols=14 Identities=14% Similarity=-0.121 Sum_probs=10.4
Q ss_pred CCcceeeeeeccCc
Q psy16649 1 SGENLCTLQIFRGC 14 (83)
Q Consensus 1 ~GKss~~~~~~~~~ 14 (83)
|||||+++.+..-.
T Consensus 40 sGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 40 CGKSTLLRMIAGLE 53 (381)
T ss_dssp SSHHHHHHHHHTSS
T ss_pred chHHHHHHHHHcCC
Confidence 79999988765543
No 491
>4ebb_A Dipeptidyl peptidase 2; hydrolase; HET: MSE NAG; 2.00A {Homo sapiens} PDB: 3jyh_A* 3n0t_A*
Probab=35.90 E-value=53 Score=21.29 Aligned_cols=30 Identities=13% Similarity=0.392 Sum_probs=20.7
Q ss_pred CChhHHHHHHHHHHHHHHhc-CCCceEEEEe
Q psy16649 53 TNEKSFDNIKNWIRNIEENA-SANVEKMLLG 82 (83)
Q Consensus 53 ~~~~s~~~~~~w~~~~~~~~-~~~~piilvg 82 (83)
|.++.+.++..+++.+++.. .++.|.|++|
T Consensus 104 t~eQALaD~a~fi~~~k~~~~~~~~pwI~~G 134 (472)
T 4ebb_A 104 TVEQALADFAELLRALRRDLGAQDAPAIAFG 134 (472)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTCTTCCEEEEE
T ss_pred CHHHHHHHHHHHHHHHHhhcCCCCCCEEEEc
Confidence 44456666667777777654 3678999887
No 492
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=35.83 E-value=3.7 Score=23.44 Aligned_cols=11 Identities=27% Similarity=0.359 Sum_probs=8.0
Q ss_pred CCcceeeeeec
Q psy16649 1 SGENLCTLQIF 11 (83)
Q Consensus 1 ~GKss~~~~~~ 11 (83)
|||||+...+.
T Consensus 18 sGKsT~a~~La 28 (227)
T 1zd8_A 18 SGKGTVSSRIT 28 (227)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 68888777664
No 493
>2w9x_A AXE2A, CJCE2B, putative acetyl xylan esterase; carbohydrate esterase family 2, hydrolase; 2.00A {Cellvibrio japonicus}
Probab=35.81 E-value=47 Score=20.53 Aligned_cols=40 Identities=13% Similarity=0.315 Sum_probs=25.4
Q ss_pred CCcEEEEEEECCC-----------------hhHH-HHHHHHHHHHHHhcCCCceEEEEe
Q psy16649 42 GAMGIMLVYDITN-----------------EKSF-DNIKNWIRNIEENASANVEKMLLG 82 (83)
Q Consensus 42 ~~~~~ilv~d~~~-----------------~~s~-~~~~~w~~~~~~~~~~~~piilvg 82 (83)
.+|.+++..-.+| .+.| ++++..++.+++.. +++++++++
T Consensus 236 ~Pd~VvI~lGtND~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~ir~~~-p~a~Iil~~ 293 (366)
T 2w9x_A 236 KPQVIVIGLGTNDFSTALNDNERWKTREALHADYVANYVKFVKQLHSNN-ARAQFILMN 293 (366)
T ss_dssp CCSEEEEECCHHHHSSCCCTTSSCCSHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEEEE
T ss_pred CCCEEEEeCccCCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHC-CCCeEEEEe
Confidence 6788888773222 1223 44667777777765 678887764
No 494
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=35.81 E-value=7.8 Score=25.65 Aligned_cols=29 Identities=10% Similarity=0.030 Sum_probs=21.4
Q ss_pred CCcceeeeeecc----CccceEEEEEEEeCCCc
Q psy16649 1 SGENLCTLQIFR----GCFQHNFHINYRDTAGQ 29 (83)
Q Consensus 1 ~GKss~~~~~~~----~~~~~~~~l~i~Dt~g~ 29 (83)
||||+++..+.. ..-+..+++.+.|..|.
T Consensus 178 SGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~ 210 (512)
T 2ius_A 178 SGASVGVNAMILSMLYKAQPEDVRFIMIDPKML 210 (512)
T ss_dssp SSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSS
T ss_pred CCHHHHHHHHHHHHHHhCCCceEEEEEECCchh
Confidence 799998776543 33346789999998774
No 495
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=35.77 E-value=3.7 Score=23.38 Aligned_cols=12 Identities=17% Similarity=0.440 Sum_probs=9.1
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
||||++..++..
T Consensus 34 sGKTtl~~~~~~ 45 (247)
T 2dr3_A 34 TGKTIFSQQFLW 45 (247)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 689999777654
No 496
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=35.76 E-value=3.6 Score=22.11 Aligned_cols=13 Identities=8% Similarity=0.059 Sum_probs=10.2
Q ss_pred CCcceeeeeeccC
Q psy16649 1 SGENLCTLQIFRG 13 (83)
Q Consensus 1 ~GKss~~~~~~~~ 13 (83)
+|||+++..+...
T Consensus 54 ~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 54 VGKTAIVEGLAQR 66 (195)
T ss_dssp SCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 6999998877554
No 497
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=35.59 E-value=32 Score=17.03 Aligned_cols=24 Identities=21% Similarity=0.610 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHhcCCCceE-EEEeC
Q psy16649 59 DNIKNWIRNIEENASANVEK-MLLGN 83 (83)
Q Consensus 59 ~~~~~w~~~~~~~~~~~~pi-ilvgN 83 (83)
+++++++++++... .++.+ ++|.|
T Consensus 36 delkkyleefrkes-qnikvlilvsn 60 (110)
T 2kpo_A 36 DELKKYLEEFRKES-QNIKVLILVSN 60 (110)
T ss_dssp HHHHHHHHHHTSST-TSEEEEEEESS
T ss_pred HHHHHHHHHHHhhc-cCeEEEEEEcC
Confidence 45666677766554 34443 34443
No 498
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=35.57 E-value=3.7 Score=22.88 Aligned_cols=12 Identities=8% Similarity=0.290 Sum_probs=9.2
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
|||||+...+..
T Consensus 31 sGKST~a~~La~ 42 (201)
T 2cdn_A 31 AGKGTQAVKLAE 42 (201)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 689988887654
No 499
>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*
Probab=35.51 E-value=79 Score=19.55 Aligned_cols=45 Identities=16% Similarity=0.209 Sum_probs=28.2
Q ss_pred hccCCcEEEEEEECCC------hhHHH----HHHHHHHHHHHhcCCCceEEEEeC
Q psy16649 39 YYRGAMGIMLVYDITN------EKSFD----NIKNWIRNIEENASANVEKMLLGN 83 (83)
Q Consensus 39 ~~~~~~~~ilv~d~~~------~~s~~----~~~~w~~~~~~~~~~~~piilvgN 83 (83)
-++++|.+++.-.... .+-++ -++...+.+.+..++.+.+++++|
T Consensus 76 ~~~daDvVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsN 130 (333)
T 5mdh_A 76 AFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGN 130 (333)
T ss_dssp HTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred HhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Confidence 4678999998754432 22232 235667777777754566888877
No 500
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=35.46 E-value=4.1 Score=24.58 Aligned_cols=12 Identities=8% Similarity=0.097 Sum_probs=8.3
Q ss_pred CCcceeeeeecc
Q psy16649 1 SGENLCTLQIFR 12 (83)
Q Consensus 1 ~GKss~~~~~~~ 12 (83)
|||||+...+..
T Consensus 16 SGKSTva~~L~~ 27 (290)
T 1a7j_A 16 AGTSTVKHTFDQ 27 (290)
T ss_dssp --CCTHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 799999988765
Done!