RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16649
(83 letters)
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 127 bits (322), Expect = 1e-39
Identities = 35/59 (59%), Positives = 45/59 (76%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFR++T AYYR A ++L+YD+TN+ SFDNI+ W+ I E A +V MLLGN
Sbjct: 66 DTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGN 124
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 127 bits (322), Expect = 2e-39
Identities = 55/59 (93%), Positives = 59/59 (100%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI+NWIRNIEE+ASA+VEKM+LGN
Sbjct: 63 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGN 121
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural
genomics, SGC, structural genomics consortium, signaling
protein; HET: GDP; 2.15A {Homo sapiens}
Length = 199
Score = 128 bits (323), Expect = 2e-39
Identities = 33/59 (55%), Positives = 44/59 (74%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFR+I +Y+R A G++L+YD+T EKSF NI+ W+ IE+ A V ML+GN
Sbjct: 83 DTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGN 141
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 127 bits (322), Expect = 2e-39
Identities = 33/59 (55%), Positives = 46/59 (77%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQER+RTITTAYYRGAMG +L+YDI N++SF +++W I+ + N + +L+GN
Sbjct: 77 DTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGN 135
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 127 bits (322), Expect = 3e-39
Identities = 34/59 (57%), Positives = 47/59 (79%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAG ER+RTITTAYYRGAMG +L+YDITNE+SF+ +++W I+ + N + +L+GN
Sbjct: 63 DTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGN 121
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 126 bits (320), Expect = 3e-39
Identities = 33/59 (55%), Positives = 48/59 (81%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERF +IT+AYYR A GI+LVYDIT +++FD++ W++ I++ AS + E +L+GN
Sbjct: 81 DTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGN 139
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 125 bits (317), Expect = 6e-39
Identities = 39/59 (66%), Positives = 50/59 (84%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFRTITTAYYRGAMGI+LVYDIT+E++F NIK W + + E+A+ + +L+GN
Sbjct: 58 DTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGN 116
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 126 bits (319), Expect = 6e-39
Identities = 31/59 (52%), Positives = 44/59 (74%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFRTIT +YYR A G +L YDIT SF ++ +WI ++ + A +N+ ++L+GN
Sbjct: 84 DTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGN 142
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 126 bits (318), Expect = 1e-38
Identities = 33/59 (55%), Positives = 51/59 (86%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFRTIT++YYRG+ GI++VYD+T+++SF+ +K W++ I+ A++ V K+L+GN
Sbjct: 63 DTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGN 121
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 126 bits (318), Expect = 1e-38
Identities = 37/59 (62%), Positives = 52/59 (88%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N+K W++ I+ AS NV K+L+GN
Sbjct: 88 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 146
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 125 bits (316), Expect = 2e-38
Identities = 37/59 (62%), Positives = 52/59 (88%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N+K W++ I+ AS NV K+L+GN
Sbjct: 71 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 129
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 125 bits (316), Expect = 2e-38
Identities = 35/59 (59%), Positives = 48/59 (81%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQER+RTITTAYYRGAMG +L+YDITNE+SF+ +++W I+ + N + +L+GN
Sbjct: 78 DTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGN 136
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 125 bits (316), Expect = 2e-38
Identities = 27/59 (45%), Positives = 45/59 (76%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAG ER+R IT+AYYRGA+G +LV+D+T +++ ++ W++ + ++A A + ML+GN
Sbjct: 80 DTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGN 138
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, signaling
protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 201
Score = 125 bits (316), Expect = 2e-38
Identities = 33/59 (55%), Positives = 43/59 (72%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFR+IT +YYR A ++L YDIT E+SF + W+R IE+ AS V +L+GN
Sbjct: 81 DTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGN 139
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 125 bits (317), Expect = 2e-38
Identities = 38/59 (64%), Positives = 50/59 (84%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFRTITTAYYRGAMGI+LVYD+T+E++F NIK W + + E+A+ + +L+GN
Sbjct: 75 DTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGN 133
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 124 bits (313), Expect = 3e-38
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERF + YYR + G +LVYDIT+E SF +KNW++ + + + ++GN
Sbjct: 61 DTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGN 119
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 124 bits (314), Expect = 4e-38
Identities = 29/59 (49%), Positives = 46/59 (77%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAG ER+R IT+AYYRGA+G +LVYDI +++N++ W++ + ++A +N+ ML+GN
Sbjct: 84 DTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 142
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z0a_A*
Length = 191
Score = 123 bits (312), Expect = 6e-38
Identities = 30/59 (50%), Positives = 47/59 (79%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQE FR+IT +YYRGA G +LVYDIT ++F+++ +W+ + +++S+N+ ML+GN
Sbjct: 76 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGN 134
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 123 bits (312), Expect = 7e-38
Identities = 30/59 (50%), Positives = 47/59 (79%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQER+R IT+AYYRGA+G +LVYDI +++N++ W++ + ++A +N+ ML+GN
Sbjct: 60 DTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 118
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 123 bits (312), Expect = 8e-38
Identities = 29/59 (49%), Positives = 44/59 (74%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFR++T +YYRGA G +LVYDIT+ ++++++ W+ + AS N+ +L GN
Sbjct: 80 DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGN 138
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein,
GDPNP, SLP2A, exophil GTP-binding, lipoprotein,
membrane, methylation; HET: GNP; 1.80A {Mus musculus}
PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 123 bits (311), Expect = 9e-38
Identities = 32/60 (53%), Positives = 48/60 (80%), Gaps = 1/60 (1%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENA-SANVEKMLLGN 83
DTAG ERFR++TTA++R AMG +L++D+TNE+SF N++NWI ++ +A S N + +L GN
Sbjct: 76 DTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGN 135
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 123 bits (310), Expect = 1e-37
Identities = 26/59 (44%), Positives = 41/59 (69%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFR +T +YYRGA G ++VYDIT +++++ +W+ + + N +L+GN
Sbjct: 70 DTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGN 128
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8
PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 123 bits (310), Expect = 1e-37
Identities = 30/59 (50%), Positives = 44/59 (74%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFR++T +YYRGA G +LVYDIT+ ++++ + NW+ + AS N+ +L GN
Sbjct: 65 DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGN 123
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 122 bits (308), Expect = 1e-37
Identities = 25/59 (42%), Positives = 39/59 (66%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAG ERFR + YYRG+ ++VYDIT E++F +KNW+R + ++ ++ + GN
Sbjct: 61 DTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGN 119
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular
transport, acetylation, golgi apparatus, lipoprotein,
membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Length = 223
Score = 124 bits (312), Expect = 1e-37
Identities = 32/59 (54%), Positives = 44/59 (74%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQER+R IT+AYYRGA+G ++VYDI+ S++N +W+ + ENA NV L+GN
Sbjct: 68 DTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGN 126
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB:
2iez_A*
Length = 217
Score = 122 bits (308), Expect = 5e-37
Identities = 30/60 (50%), Positives = 49/60 (81%), Gaps = 1/60 (1%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASA-NVEKMLLGN 83
DTAGQERFR++TTA++R AMG +L++D+T+++SF N++NW+ ++ NA N + +L+GN
Sbjct: 90 DTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGN 149
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 121 bits (305), Expect = 5e-37
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQE F IT AYYRGA +LV+ T+ +SF+ I +W + ++ L+ N
Sbjct: 60 DTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQN 117
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 121 bits (305), Expect = 5e-37
Identities = 32/59 (54%), Positives = 46/59 (77%), Gaps = 1/59 (1%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFRTIT+ YYRG G+++VYD+T+ +SF N+K W+ I +N +V ++L+GN
Sbjct: 64 DTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGN 121
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 121 bits (305), Expect = 5e-37
Identities = 24/59 (40%), Positives = 39/59 (66%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQER+ ++ YYRGA ++V+D+TN+ SF+ K W++ ++ + N+ L GN
Sbjct: 67 DTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGN 125
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein
transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8
PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A*
1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A*
2hei_A* 1z07_A*
Length = 170
Score = 120 bits (304), Expect = 5e-37
Identities = 30/59 (50%), Positives = 41/59 (69%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQER+ ++ YYRGA ++VYDITNE+SF KNW++ ++ AS N+ L GN
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGN 119
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 121 bits (306), Expect = 5e-37
Identities = 25/59 (42%), Positives = 39/59 (66%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERF ++ YYRG+ ++VYDIT + SF +K W++ ++E+ N+ + GN
Sbjct: 78 DTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGN 136
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 120 bits (304), Expect = 7e-37
Identities = 26/59 (44%), Positives = 37/59 (62%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERFR++ +Y R + ++VYDITN SF WI ++ ++V ML+GN
Sbjct: 69 DTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGN 127
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB
GTPase, ARL GTPase, golgin, RAB effector, clAsp protein;
HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 121 bits (306), Expect = 9e-37
Identities = 25/59 (42%), Positives = 36/59 (61%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAG ERFR++ +Y R + ++VYDITN SF WI ++ ++V ML+GN
Sbjct: 71 DTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGN 129
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 121 bits (306), Expect = 1e-36
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQE+ + YY GA G +L +D+T+ + N+ W++ + ++ N
Sbjct: 67 DTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCAN 125
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 120 bits (302), Expect = 2e-36
Identities = 31/60 (51%), Positives = 43/60 (71%), Gaps = 1/60 (1%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASAN-VEKMLLGN 83
DTAGQERFRT+T +YYRGA G++LVYD+T +F + NW+ +E + N + ML+GN
Sbjct: 70 DTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGN 129
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 118 bits (297), Expect = 1e-35
Identities = 26/61 (42%), Positives = 40/61 (65%), Gaps = 2/61 (3%)
Query: 25 DTAGQERFR-TITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASAN-VEKMLLG 82
DTAGQERFR ++ YYR ++ VYD+TN SF ++ WI +++ AN + ++L+G
Sbjct: 75 DTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVG 134
Query: 83 N 83
N
Sbjct: 135 N 135
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET:
G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 117 bits (295), Expect = 2e-35
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE---NASANVEKMLL 81
D GQ + Y GA G++LVYDITN +SF+N+++W +++ + L+
Sbjct: 62 DIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALV 121
Query: 82 GN 83
GN
Sbjct: 122 GN 123
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport;
HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB:
1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 116 bits (293), Expect = 3e-35
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASA----NVEKML 80
DTAGQERFR++ T +YRG+ +L + + + +SF N+ NW + A + ++
Sbjct: 62 DTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVI 121
Query: 81 LGN 83
LGN
Sbjct: 122 LGN 124
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport;
HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Length = 207
Score = 116 bits (294), Expect = 6e-35
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENAS----ANVEKML 80
DTAGQERF+++ A+YRGA +LV+D+T +F + +W AS N ++
Sbjct: 63 DTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVV 122
Query: 81 LGN 83
LGN
Sbjct: 123 LGN 125
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 115 bits (290), Expect = 1e-34
Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 17/86 (19%)
Query: 2 GENLCTLQIFRGCFQHNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 61
G+ + T+Q++ DTAGQERF+++ A+YRGA +LVYD+TN SF+NI
Sbjct: 54 GDKVATMQVW-------------DTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENI 100
Query: 62 KNWIRNIEENASA----NVEKMLLGN 83
K+W +A+ ++LGN
Sbjct: 101 KSWRDEFLVHANVNSPETFPFVILGN 126
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 115 bits (291), Expect = 1e-34
Identities = 15/62 (24%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNW---IRNIEENASANVEKMLL 81
DTAG + ++ + Y+ G +LV+D+++ +SF++ K W +++ + + +L+
Sbjct: 79 DTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLV 138
Query: 82 GN 83
N
Sbjct: 139 AN 140
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 113 bits (286), Expect = 1e-33
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQE+F + YY A ++++D+T+ ++ N+ NW R++ N+ +L GN
Sbjct: 70 DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGN 127
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein; HET:
GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 109 bits (273), Expect = 6e-32
Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQER+ +I YYRGA ++V+DI+N + D K W+ ++ S+N +L+ N
Sbjct: 99 DTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLK--ISSNYIIILVAN 155
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 102 bits (255), Expect = 2e-29
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKS-FDNIKNWIRNIEENASANVEKMLLGN 83
D AG+E F + + + VYD++ ++ D +K W+ NI+ AS + +L+G
Sbjct: 62 DFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARAS-SSPVILVGT 120
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 96.4 bits (241), Expect = 3e-27
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE-NASANVEKMLLGN 83
DTAGQE F + Y R G +LV+ I + +SF+ + I + +L+GN
Sbjct: 63 DTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGN 122
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 96.1 bits (240), Expect = 3e-27
Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 14/79 (17%)
Query: 6 CTLQIFRGCFQHNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWI 65
L + DTAGQE F + Y R G ++VY +T++ SF+++ +
Sbjct: 66 AILDVL-------------DTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFH 112
Query: 66 RNIEENA-SANVEKMLLGN 83
+ I + +L+ N
Sbjct: 113 QLILRVKDRESFPMILVAN 131
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 95.6 bits (239), Expect = 4e-27
Identities = 13/79 (16%), Positives = 29/79 (36%), Gaps = 14/79 (17%)
Query: 6 CTLQIFRGCFQHNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWI 65
+L ++ D Q+ R + ++VY +T++ SF+
Sbjct: 49 ASLMVY-------------DIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELR 95
Query: 66 RNI-EENASANVEKMLLGN 83
+ + +V +L+GN
Sbjct: 96 VQLRRARQTDDVPIILVGN 114
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 95.7 bits (239), Expect = 6e-27
Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 14/79 (17%)
Query: 6 CTLQIFRGCFQHNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWI 65
+ I DTAGQE + I Y+R G + V+ IT +SF ++
Sbjct: 66 VQIDIL-------------DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFR 112
Query: 66 RNIEE-NASANVEKMLLGN 83
I NV +L+GN
Sbjct: 113 EQILRVKEDENVPFLLVGN 131
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 94.9 bits (237), Expect = 7e-27
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE-NASANVEKMLLGN 83
DTAGQE + I Y+R G + V+ IT +SF ++ I NV +L+GN
Sbjct: 58 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGN 117
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 95.4 bits (238), Expect = 1e-26
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNI-EENASANVEKMLLGN 83
DTAGQ+ + + ++ G G +LVY +T+ SF I++ + + E + V +L+GN
Sbjct: 78 DTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGN 137
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 95.4 bits (238), Expect = 2e-26
Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 14/79 (17%)
Query: 6 CTLQIFRGCFQHNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWI 65
+ I DTAGQE + I Y+R G + V+ IT +SF ++
Sbjct: 62 VQIDIL-------------DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFR 108
Query: 66 RNIEE-NASANVEKMLLGN 83
I NV +L+GN
Sbjct: 109 EQILRVKEDENVPFLLVGN 127
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 94.5 bits (236), Expect = 2e-26
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNI-EENASANVEKMLLGN 83
DTAGQ+ + Y G +LVY +T+ KSF+ IK + + + ML+GN
Sbjct: 60 DTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGN 119
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 94.1 bits (235), Expect = 2e-26
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENA-SANVEKMLLGN 83
DTAGQE + + Y R G + V+ I N KSF++I + I+ S +V +L+GN
Sbjct: 57 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 93.7 bits (234), Expect = 2e-26
Identities = 11/80 (13%), Positives = 28/80 (35%), Gaps = 15/80 (18%)
Query: 6 CTLQIFRGCFQHNFHINYRDTAGQERFR-TITTAYYRGAMGIMLVYDITNEKSFDNIKNW 64
TL ++ D Q + + ++V+ +T+ +SF +
Sbjct: 51 VTLIVY-------------DIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPET 97
Query: 65 IRNI-EENASANVEKMLLGN 83
+ + ++ +L+GN
Sbjct: 98 LLRLRAGRPHHDLPVILVGN 117
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Length = 167
Score = 93.3 bits (233), Expect = 3e-26
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE-NASANVEKMLLGN 83
DTAG E+F ++ Y + G +LVY + N++SF +IK I V +L+GN
Sbjct: 57 DTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGN 116
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 93.8 bits (234), Expect = 5e-26
Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 15/80 (18%)
Query: 6 CTLQIFRGCFQHNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWI 65
CTLQI DT G +F + +LV+ +T+++S + +
Sbjct: 56 CTLQIT-------------DTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIY 102
Query: 66 RNIEE--NASANVEKMLLGN 83
+ I + + ++ ML+GN
Sbjct: 103 KLIVQIKGSVEDIPVMLVGN 122
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 92.6 bits (231), Expect = 5e-26
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE-NASANVEKMLLGN 83
DTAG E+F + Y + G LVY IT + +F+++++ I + +V +L+GN
Sbjct: 57 DTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGN 116
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 93.4 bits (233), Expect = 6e-26
Identities = 11/80 (13%), Positives = 28/80 (35%), Gaps = 15/80 (18%)
Query: 6 CTLQIFRGCFQHNFHINYRDTAGQERFR-TITTAYYRGAMGIMLVYDITNEKSFDNIKNW 64
TL ++ D Q + + ++V+ +T+ +SF +
Sbjct: 72 VTLVVY-------------DIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPET 118
Query: 65 IRNIEEN-ASANVEKMLLGN 83
+ + ++ +L+GN
Sbjct: 119 LLRLRAGRPHHDLPVILVGN 138
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 93.0 bits (232), Expect = 7e-26
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE-NASANVEKMLLGN 83
DTAGQE + + Y R G + V+ I N KSF++I ++ I+ S +V +L+GN
Sbjct: 58 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGN 117
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP:
c.37.1.8
Length = 170
Score = 92.6 bits (230), Expect = 7e-26
Identities = 25/59 (42%), Positives = 39/59 (66%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
DTAGQERF ++ YYR A ++VYD+T +SF ++W++ + E AS ++ L+GN
Sbjct: 58 DTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGN 116
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 92.2 bits (230), Expect = 9e-26
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEE--NASANVEKMLLG 82
DT G +F + +LVY IT+ +S + +K I E ++ ML+G
Sbjct: 57 DTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVG 116
Query: 83 N 83
N
Sbjct: 117 N 117
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 92.7 bits (231), Expect = 1e-25
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENA-SANVEKMLLGN 83
DTAGQE + + Y R G + V+ I N KSF +I + I+ S +V +L+GN
Sbjct: 75 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGN 134
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and
GEM like GTP protein 1, structural genomics; HET: GDP;
2.50A {Homo sapiens}
Length = 175
Score = 87.2 bits (217), Expect = 1e-23
Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 16/81 (19%)
Query: 6 CTLQIFRGCFQHNFHINYRDTAGQERFRTITT--AYYRGAMGIMLVYDITNEKSFDNIKN 63
TL + DT E+ + + +G ++VY I + SF++
Sbjct: 52 TTLVVV-------------DTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASE 98
Query: 64 WIRNI-EENASANVEKMLLGN 83
+ + + +V +L+GN
Sbjct: 99 LRIQLRRTHQADHVPIILVGN 119
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 87.0 bits (216), Expect = 2e-23
Identities = 10/60 (16%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNI-EENASANVEKMLLGN 83
+ G+ + + + ++VY IT+ SF+ + + ++ +L+GN
Sbjct: 65 ENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGN 122
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 85.8 bits (213), Expect = 7e-23
Identities = 10/60 (16%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNI-EENASANVEKMLLGN 83
+ G+ + + + ++VY IT+ SF+ + + ++ +L+GN
Sbjct: 96 ENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGN 153
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 84.2 bits (209), Expect = 2e-22
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEN-ASANVEKMLLGN 83
DTAGQE + R G +LVYDIT+ SF+ + ++E NV +L+GN
Sbjct: 82 DTAGQEDTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGN 140
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 83.4 bits (207), Expect = 4e-22
Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 19/79 (24%)
Query: 6 CTLQIFRGCFQHNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWI 65
L I RD G + + ++ V+ + +E SF + N+
Sbjct: 67 YLLLI-------------RDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYF 108
Query: 66 RNIEENA-SANVEKMLLGN 83
+ ++ V +L+G
Sbjct: 109 LRLCSFRNASEVPMVLVGT 127
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 80.0 bits (198), Expect = 6e-21
Identities = 11/81 (13%), Positives = 26/81 (32%), Gaps = 21/81 (25%)
Query: 6 CTLQIFRGCFQHNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNW- 64
+ I R+ AG + + A ++ V+ + +E SF +
Sbjct: 54 HLVLI-------------REEAGAPDAK-----FSGWADAVIFVFSLEDENSFQAVSRLH 95
Query: 65 --IRNIEENASANVEKMLLGN 83
+ ++ + L+G
Sbjct: 96 GQLSSLRGEGRGGLALALVGT 116
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 79.2 bits (196), Expect = 2e-20
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENA---SANVEKMLL 81
DTA + R Y A ++VY + + +SFD+ +++ + +A ++ +LL
Sbjct: 75 DTADLDTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLL 133
Query: 82 GN 83
GN
Sbjct: 134 GN 135
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 78.5 bits (193), Expect = 5e-19
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 4/59 (6%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKMLLGN 83
D GQE + + ML+ D + N W+R+IE+ +++ N
Sbjct: 104 DFGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNKHYWLRHIEKYGG-KSPVIVVMN 158
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 66.2 bits (162), Expect = 2e-15
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 19 FHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKN-WIRNIEENASANVE 77
F ++ DTAGQE + + Y + ++L + + N SFDNI W I+ +
Sbjct: 71 FILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHY-IDTAK 129
Query: 78 KMLLGN 83
+L+G
Sbjct: 130 TVLVGL 135
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding, methylation,
lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo
sapiens}
Length = 214
Score = 64.0 bits (156), Expect = 2e-14
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKN-WIRNIEENASANVEKMLLGN 83
DTAGQ+ + + +Y A ++L +D+T+ SFDNI N W + V +++G
Sbjct: 88 DTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCK-KVPIIVVGC 146
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 63.2 bits (154), Expect = 2e-14
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 2 GENLCTLQIFRGCFQHNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 61
+N + G ++ DTAGQE + + YRGA +L + + ++ S++N+
Sbjct: 42 FDNFSANVVVNG---ATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENV 98
Query: 62 KN-WIRNIEENASANVEKMLLGN 83
WI ++ A V +L+G
Sbjct: 99 SKKWIPELKHYA-PGVPIVLVGT 120
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein,
signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB:
2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A*
3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B*
1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Length = 201
Score = 62.1 bits (151), Expect = 9e-14
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 19 FHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKN-WIRNIEENASANVE 77
+ DTAGQE + + Y I++ + I + S +NI W ++ NV
Sbjct: 73 VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVP 131
Query: 78 KMLLGN 83
+L+GN
Sbjct: 132 IILVGN 137
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 59.7 bits (145), Expect = 4e-13
Identities = 13/67 (19%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKN-WIRNIEENASANV 76
++ DT+G + + Y + +++ +DI+ ++ D++ W I+E N
Sbjct: 54 RIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NT 112
Query: 77 EKMLLGN 83
+ +L+G
Sbjct: 113 KMLLVGC 119
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 59.0 bits (143), Expect = 1e-12
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 19 FHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKN-WIRNIEENASANVE 77
+ DTAGQE + + Y I++ + + + S +NI W+ ++ NV
Sbjct: 73 VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC-PNVP 131
Query: 78 KMLLGN 83
+L+ N
Sbjct: 132 IILVAN 137
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP:
c.37.1.8
Length = 205
Score = 58.6 bits (142), Expect = 2e-12
Identities = 15/82 (18%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 3 ENLCTLQIFRGCFQHNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIK 62
EN ++ DT+G + + Y + +++ +DI+ ++ D++
Sbjct: 63 ENYTASFEIDT---QRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVL 119
Query: 63 N-WIRNIEENASANVEKMLLGN 83
W I+E N + +L+G
Sbjct: 120 KKWKGEIQEFCP-NTKMLLVGC 140
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 57.5 bits (139), Expect = 5e-12
Identities = 14/66 (21%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 19 FHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKN-WIRNIEENASANVE 77
++ DTAGQE + + Y ++ + + + SF+N++ W + + N
Sbjct: 78 VNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH-CPNTP 136
Query: 78 KMLLGN 83
+L+G
Sbjct: 137 IILVGT 142
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 57.1 bits (138), Expect = 6e-12
Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKN-WIRNIEENASAN 75
++ DTAGQE + + Y ++ + + + SF+N++ W + + N
Sbjct: 51 KPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHH-CPN 109
Query: 76 VEKMLLGN 83
+L+G
Sbjct: 110 TPIILVGT 117
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 57.2 bits (138), Expect = 6e-12
Identities = 13/67 (19%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI-KNWIRNIEENASANV 76
++ DT+G + + Y + ++L +DI+ ++ D+ K W I + +
Sbjct: 74 RVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP-ST 132
Query: 77 EKMLLGN 83
+L+G
Sbjct: 133 RVLLIGC 139
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Length = 194
Score = 52.1 bits (125), Expect = 4e-10
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 19 FHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKN-WIRNIEENASANVE 77
+ + DTAGQE + + Y ++ + + N SF N+K W+ ++E A NV
Sbjct: 66 YLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP-NVP 124
Query: 78 KMLLGN 83
+L+G
Sbjct: 125 FLLIGT 130
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 52.0 bits (125), Expect = 5e-10
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Query: 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKN-WIRNIEENASANV 76
+ DTAGQ+ F + Y +L + + + SF N+ W+ I +
Sbjct: 67 PVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP-KA 125
Query: 77 EKMLLGN 83
+L+G
Sbjct: 126 PIILVGT 132
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 51.6 bits (124), Expect = 8e-10
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKN-WIRNIEENASANVEKMLLGN 83
DTAGQE + + YRGA +L + + ++ S++N+ W+ + + NV +L+G
Sbjct: 63 DTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRF-APNVPIVLVGT 121
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase,
glucorticoid receptor, structural genomics consortium,
SGC, alternative splicing; HET: GNP; 1.80A {Homo
sapiens}
Length = 255
Score = 48.1 bits (114), Expect = 2e-08
Identities = 11/99 (11%), Positives = 26/99 (26%), Gaps = 40/99 (40%)
Query: 25 DTAGQERFRTITTAYYRGAM-------------------------------------GIM 47
D Q T Y + A G +
Sbjct: 108 DQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFL 167
Query: 48 LVYDITNE--KSFDNIKNWIRNIEENASANVEKMLL-GN 83
L D++ ++FD+ ++ N+ + + +++
Sbjct: 168 LGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLT 206
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 44.7 bits (106), Expect = 3e-07
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 25 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANVEKM 79
GQ + RG GI+ V D + N ++ RN+ EN + +
Sbjct: 80 TVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESM-RNMRENLAEYGLTL 133
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase,
cell adhesion, nucleotide-binding, protein engineering,
RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa}
PDB: 2wkr_A* 2wkp_A*
Length = 332
Score = 43.4 bits (102), Expect = 1e-06
Identities = 12/66 (18%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Query: 19 FHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKN-WIRNIEENASANVE 77
++ DTAG E + + Y ++ + + + SF +++ W + + N
Sbjct: 203 VNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTP 261
Query: 78 KMLLGN 83
+L+G
Sbjct: 262 IILVGT 267
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 34.6 bits (79), Expect = 0.001
Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 6/70 (8%)
Query: 14 CFQHNFHINYRDTAGQERFRTIT---TAYYRGAMGIMLVYDITNE--KSFDNIKNWIRNI 68
+ D GQ F T +RG ++ V D ++ ++ + +
Sbjct: 64 SNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKA 123
Query: 69 -EENASANVE 77
+ N N E
Sbjct: 124 YKVNPDMNFE 133
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 34.1 bits (79), Expect = 0.002
Identities = 10/46 (21%), Positives = 20/46 (43%)
Query: 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKN 63
F +N D GQ+ R+ Y+ G++ V D + + + +
Sbjct: 61 GFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQR 106
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 33.8 bits (78), Expect = 0.002
Identities = 11/46 (23%), Positives = 18/46 (39%)
Query: 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKN 63
N D GQE R+ YY +++V D T+ + +
Sbjct: 59 NTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTRE 104
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 33.8 bits (78), Expect = 0.002
Identities = 11/46 (23%), Positives = 16/46 (34%)
Query: 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKN 63
N +N D GQ R YY ++ V D T++
Sbjct: 61 NLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASK 106
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 33.7 bits (78), Expect = 0.002
Identities = 11/46 (23%), Positives = 19/46 (41%)
Query: 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKN 63
F +N D GQ + R +Y+ ++ V D + K F+
Sbjct: 59 GFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQ 104
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 33.8 bits (78), Expect = 0.002
Identities = 9/51 (17%), Positives = 22/51 (43%)
Query: 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNI 68
N D GQ++ R + Y++ G++ V D + + + ++ +
Sbjct: 72 NICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKM 122
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 33.3 bits (77), Expect = 0.003
Identities = 9/46 (19%), Positives = 13/46 (28%)
Query: 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKN 63
N D G R YY ++ V D + K+
Sbjct: 50 NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKS 95
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 33.4 bits (77), Expect = 0.003
Identities = 10/46 (21%), Positives = 15/46 (32%)
Query: 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKN 63
N D GQ R Y+ ++ V D T+ K+
Sbjct: 65 NISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKH 110
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 33.3 bits (77), Expect = 0.003
Identities = 9/46 (19%), Positives = 20/46 (43%)
Query: 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKN 63
N D GQ++ R + Y++ G++ V D + + + +
Sbjct: 43 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE 88
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 33.0 bits (76), Expect = 0.004
Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 3/69 (4%)
Query: 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNI---EENASA 74
+ D +GQ R+R + YY+ I+ V D ++ K + + +
Sbjct: 66 SLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHR 125
Query: 75 NVEKMLLGN 83
+ + N
Sbjct: 126 RIPILFFAN 134
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 33.0 bits (76), Expect = 0.004
Identities = 11/46 (23%), Positives = 18/46 (39%)
Query: 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKN 63
N D GQE R+ YY +++V D T+ + +
Sbjct: 64 NTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTRE 109
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 32.9 bits (76), Expect = 0.004
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKN 63
N I D GQ RFR++ Y RG I+ + D +++ + KN
Sbjct: 66 NVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKN 111
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 31.1 bits (70), Expect = 0.023
Identities = 10/67 (14%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Query: 14 CFQHNFHINYRDTAGQERF-----RTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNI 68
F N +N D GQ+ F ++ ++ V+D+ + + +I+ + + +
Sbjct: 47 RFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKAL 106
Query: 69 EENASAN 75
++ +
Sbjct: 107 KQLRKYS 113
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 29.9 bits (67), Expect = 0.061
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYD 51
N N D GQ++ R + YY G G++ V D
Sbjct: 365 NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVD 398
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 29.9 bits (67), Expect = 0.073
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYD 51
N D GQ++ R + Y++ G++ V D
Sbjct: 208 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 241
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 29.2 bits (66), Expect = 0.098
Identities = 8/46 (17%), Positives = 14/46 (30%)
Query: 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKN 63
D G + R + Y GI+ + D + + K
Sbjct: 68 GMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKE 113
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 28.7 bits (65), Expect = 0.12
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 18 NFHINYRDTAGQERFRTITTAYYRGAMGIMLVYD 51
N D G + R + Y+ GI+ + D
Sbjct: 66 NIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVD 99
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 27.8 bits (62), Expect = 0.32
Identities = 6/39 (15%), Positives = 13/39 (33%), Gaps = 4/39 (10%)
Query: 17 HNFHINYRDTAGQERFRTITTAYYRGAM----GIMLVYD 51
+ D G + R + Y + G++ + D
Sbjct: 89 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVD 127
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 27.4 bits (61), Expect = 0.41
Identities = 6/39 (15%), Positives = 13/39 (33%), Gaps = 4/39 (10%)
Query: 17 HNFHINYRDTAGQERFRTITTAYY----RGAMGIMLVYD 51
+ D G + R + Y + G++ + D
Sbjct: 53 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVD 91
>3ty2_A 5'-nucleotidase SURE; surviVal protein, phosphatase, hydrolase;
HET: MSE; 1.89A {Coxiella burnetii}
Length = 261
Score = 26.7 bits (60), Expect = 0.75
Identities = 7/22 (31%), Positives = 16/22 (72%)
Query: 48 LVYDITNEKSFDNIKNWIRNIE 69
L D+T+ ++FD + +W++ +E
Sbjct: 239 LRVDLTHYEAFDQLASWVKRLE 260
>2v4n_A Multifunctional protein SUR E; hydrolase, surviVal protein,
stationary phase, phosph mononucleotidase, divalent
metal ION; 1.7A {Salmonella typhimurium} PDB: 2v4o_A
Length = 254
Score = 26.3 bits (59), Expect = 1.0
Identities = 5/26 (19%), Positives = 12/26 (46%)
Query: 48 LVYDITNEKSFDNIKNWIRNIEENAS 73
L D+T + D + +W+ ++
Sbjct: 228 LHVDLTAHSAHDVVSDWLDSVGVGTQ 253
>1zy9_A Alpha-galactosidase; TM1192, struc genomics, joint center for
structural genomics, JCSG, prote structure initiative,
PSI, hydrolase; 2.34A {Thermotoga maritima} SCOP:
b.30.5.11 c.1.8.13
Length = 564
Score = 26.6 bits (58), Expect = 1.0
Identities = 3/34 (8%), Positives = 14/34 (41%)
Query: 38 AYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEN 71
YR + D++ ++ + + + ++ +
Sbjct: 298 MAYRNWNKKIYALDLSKDEVLNWLFDLFSSLRKM 331
>4alk_A ENR, enoyl-[acyl-carrier-protein] reductase [NADPH];
oxidoreductase, short-chain dehydrogenase/reductase
superfam fatty acid biosynthesis; HET: NAP E9P GLU;
1.90A {Staphylococcus aureus} PDB: 4alj_A* 4ali_A*
4alm_A 4aln_A 3gr6_A* 3gns_A* 3gnt_A 4all_A*
Length = 282
Score = 25.3 bits (56), Expect = 2.5
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 5/43 (11%)
Query: 20 HINYRDTAGQERFRTITTAYYRGAMGIM-----LVYDITNEKS 57
H ++ T Y++GAM + ++ I N++S
Sbjct: 3 HHHHHHPMSDYDIPTTENLYFQGAMVNLENKTYVIMGIANKRS 45
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific]
1,mitochondrial; oxidoreductase, thioester reduction,
fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2
c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Length = 364
Score = 25.0 bits (55), Expect = 3.3
Identities = 5/31 (16%), Positives = 8/31 (25%)
Query: 21 INYRDTAGQERFRTITTAYYRGAMGIMLVYD 51
I +E TI + L +
Sbjct: 221 ITEDQNNSREFGPTIKEWIKQSGGEAKLALN 251
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 24.8 bits (53), Expect = 4.8
Identities = 2/31 (6%), Positives = 15/31 (48%)
Query: 50 YDITNEKSFDNIKNWIRNIEENASANVEKML 80
Y+++ + + ++ + + + ++ +L
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVL 159
>2ivy_A Hypothetical protein SSO1404; structural genomics, unknown
function, CAS, RNAI, crispr; 1.4A {Sulfolobus
solfataricus} SCOP: d.58.58.1 PDB: 2i8e_A
Length = 101
Score = 23.8 bits (51), Expect = 6.0
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 42 GAMGIMLVYDITNEK 56
GAM ++ YDIT++
Sbjct: 1 GAMLYLIFYDITDDN 15
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.136 0.414
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,229,240
Number of extensions: 57642
Number of successful extensions: 272
Number of sequences better than 10.0: 1
Number of HSP's gapped: 240
Number of HSP's successfully gapped: 113
Length of query: 83
Length of database: 6,701,793
Length adjustment: 51
Effective length of query: 32
Effective length of database: 5,277,822
Effective search space: 168890304
Effective search space used: 168890304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.3 bits)